BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000407
         (1558 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255553977|ref|XP_002518029.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
 gi|223543011|gb|EEF44547.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
          Length = 1542

 Score = 2375 bits (6154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1150/1545 (74%), Positives = 1321/1545 (85%), Gaps = 17/1545 (1%)

Query: 23   MKNKKRKPKSEVPE-TKDSTSGQKEKMKKLSQDSEEP---RKRPKRMAACTDFKEKSVRI 78
            MK  K KPKS V +  K+  +  KEK +  SQ +EEP   +KRPKR AACTDFKEK+VR+
Sbjct: 1    MKKNKGKPKSSVSKANKEQINNIKEKKRSSSQKNEEPAGSKKRPKRAAACTDFKEKAVRL 60

Query: 79   SEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDL 138
            S+KS ++E+++DQ+ADDEI+AV LT  QD  RPNRRL DF++HDENG PQPLEM+E+DD+
Sbjct: 61   SDKSSVLESRRDQFADDEILAVHLTHGQDDGRPNRRLTDFVVHDENGTPQPLEMIEVDDM 120

Query: 139  FISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPAS 198
            FISGLILPL E+ D+EKEK VRCEGFGRIE W ISGYEDG PVIWL+TDIADY+CLKPA+
Sbjct: 121  FISGLILPLDENPDKEKEKRVRCEGFGRIEGWDISGYEDGFPVIWLTTDIADYNCLKPAN 180

Query: 199  SYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKD 258
            +YKK+Y+ FFEKARACIEVYKKLS++SGGN D ++DELLAGVVRSMSGSKCF G  SIKD
Sbjct: 181  NYKKFYDHFFEKARACIEVYKKLSRSSGGNPDLTLDELLAGVVRSMSGSKCFSGAASIKD 240

Query: 259  FVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAI 318
            FVISQG FI+ QL+GLDETSK NDQKFA+L  L+AL+++S +  NFV   A +  GNL I
Sbjct: 241  FVISQGNFIYKQLLGLDETSKNNDQKFADLSALLALRDKSEEHGNFVLAKAVNTSGNLTI 300

Query: 319  GSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQS-KKQKKTQGSTSGMNKFYI 377
              K GD    ++Q  SST  A EDEDAKLARLLQEEE WQ+ KKQKK  GS S  N  YI
Sbjct: 301  YQKFGDSVSNVNQSISSTA-AGEDEDAKLARLLQEEEYWQTTKKQKKIHGSASSSNTIYI 359

Query: 378  KINEDEIANDYPFPVFYRPSEEEFDELLAYDSD-YDSCDIDQLPRRMLHDWSLYNSDSRL 436
            KINEDEIANDYP PVFY+ S+EE DE +A D++ +   D D+LP+RMLH+WSLYNSDSRL
Sbjct: 360  KINEDEIANDYPLPVFYKHSDEETDEYIAIDTEEHIMVDPDELPKRMLHNWSLYNSDSRL 419

Query: 437  ISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSS 496
            ISLELLPMKPCEDIDVTIFGSG+M  D+GSGF LD D  Q +S  SGAQD  G PI+LS+
Sbjct: 420  ISLELLPMKPCEDIDVTIFGSGRMTEDDGSGFSLDDDPDQSSSAGSGAQDDVGLPIFLSA 479

Query: 497  IKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRV 556
            IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQY  WY+PVLKTA++A SIIT+LKEQ+RV
Sbjct: 480  IKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYTSWYKPVLKTAKLARSIITLLKEQSRV 539

Query: 557  SRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFII 616
            SRLSF DVI+R+SE KKD H YISSDPA VERYVVVHGQI+LQLFAE+PDE+IKKCAF++
Sbjct: 540  SRLSFGDVIRRVSEFKKDDHGYISSDPATVERYVVVHGQIILQLFAEFPDEKIKKCAFVV 599

Query: 617  GLMKKMEERHHTKWLVKKKKV-QKSEINLNPRASMGPV--VVSKRKVMQATTTRLINRIW 673
            GL  KMEERHHTKW+V KK++ QK++ NLNPRA+M  +  VVSKRK MQATTTRLINRIW
Sbjct: 600  GLTSKMEERHHTKWVVNKKQILQKNQPNLNPRAAMSSMAPVVSKRKAMQATTTRLINRIW 659

Query: 674  GEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSR 733
            GEYYSNYSPED KE T CEA E++EVEEQ ENE+D  EE+ L+S++ Q +CS++ + KS 
Sbjct: 660  GEYYSNYSPEDLKEATNCEAKEEDEVEEQEENEDDAEEEKLLLSDKTQKACSMSSRTKSY 719

Query: 734  STKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFE 791
            S K E+ W+G  V K  SG A+Y  AIV GEV+ +G+AV +EVDE D+LP IYFVEYMFE
Sbjct: 720  S-KDEVLWDGNPVSKTHSGEAIYNSAIVRGEVIKVGAAVYLEVDESDELPAIYFVEYMFE 778

Query: 792  ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQ 851
             +GG K+FHG +MQ GS T+LGN ANEREVFL N+C + ELQD+KQ + V++R +PWG+Q
Sbjct: 779  TSGGSKMFHGRVMQHGSGTILGNAANEREVFLTNECLNYELQDVKQAIAVEVRKMPWGYQ 838

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACG 911
            HR D A AD++DRA+AEERKKKGLP EYYCKS+YWPERGAFF LP DSMGLG G CH+C 
Sbjct: 839  HRNDNATADRIDRAKAEERKKKGLPLEYYCKSMYWPERGAFFSLPFDSMGLGSGICHSCK 898

Query: 912  TKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
             KE E EK  F+V+S +T FV+   EY +HD+VY+SP HFT ++ E ET+K GRNVGLK 
Sbjct: 899  VKEVEMEKYIFRVNSSRTGFVHMGTEYSIHDFVYVSPCHFTIER-EAETYKGGRNVGLKA 957

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFV 1030
            Y VCQLLEI+VPKEPK+AE  STQVK+RRF RP+DIS+EKAYCSDIREVYY+EETHL+ V
Sbjct: 958  YAVCQLLEIVVPKEPKQAEATSTQVKIRRFSRPEDISSEKAYCSDIREVYYTEETHLLSV 1017

Query: 1031 EAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSE 1090
            E I GKCEVRKKNDIP C + AIF HIFFCEHL+DPSKGSLKQLPAHIKLRYS+G+ +S+
Sbjct: 1018 ETIEGKCEVRKKNDIPPCGSAAIFDHIFFCEHLYDPSKGSLKQLPAHIKLRYSTGTQESD 1077

Query: 1091 AASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIE 1150
            AASR++KGKC EGEDE+E +++  A+Q   LATLDIF+GCGGLSEGLQQ+G+SSTKWAIE
Sbjct: 1078 AASRKRKGKCKEGEDEVENKRE--ATQGRRLATLDIFSGCGGLSEGLQQAGVSSTKWAIE 1135

Query: 1151 YEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINN 1210
            YEEPAGEAFKLNHPESL+ INNCNVILRAVMEKCGD +DC+STSEA ELAASLDE +IN+
Sbjct: 1136 YEEPAGEAFKLNHPESLVFINNCNVILRAVMEKCGDTDDCISTSEAIELAASLDEKIIND 1195

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRN 1270
            LPLPGQVDFINGGPPCQGFSGMNRF+QSTWSKVQCEMILAFLSFADYF+P+YFLLENVRN
Sbjct: 1196 LPLPGQVDFINGGPPCQGFSGMNRFSQSTWSKVQCEMILAFLSFADYFRPKYFLLENVRN 1255

Query: 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
            FVSFNKGQTFRL LASLLEMGYQVRFGILEAGA+GVS SRKRAFIWAASP + LPEWPEP
Sbjct: 1256 FVSFNKGQTFRLALASLLEMGYQVRFGILEAGAYGVSHSRKRAFIWAASPEEVLPEWPEP 1315

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
            MHVF+APELKI LS N  Y+AVRSTANGAPFRA+TVRDTIGDLP VGNGAS T MEY+ND
Sbjct: 1316 MHVFSAPELKISLSGNSHYAAVRSTANGAPFRAITVRDTIGDLPVVGNGASATNMEYKND 1375

Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
            PVSWFQKRIRGNM  LTDHISKEMNELNLIRCQKIPKRPGADW DLPDEKVKLSTGQ+VD
Sbjct: 1376 PVSWFQKRIRGNMVTLTDHISKEMNELNLIRCQKIPKRPGADWRDLPDEKVKLSTGQLVD 1435

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP+QDRILTVRECA
Sbjct: 1436 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRILTVRECA 1495

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            RSQGF DSY+F G+IQHKHRQIGNAVPP LA+ALG KLKEA++ +
Sbjct: 1496 RSQGFRDSYKFAGNIQHKHRQIGNAVPPPLAYALGIKLKEALDGR 1540


>gi|225463167|ref|XP_002267200.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis
            vinifera]
          Length = 1549

 Score = 2313 bits (5995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1166/1566 (74%), Positives = 1325/1566 (84%), Gaps = 28/1566 (1%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTS-GQKEKMKKLSQDSEEP- 58
            MGSAALLDSK            MK  K K KS  P TK + + GQK K + +SQ SE+P 
Sbjct: 1    MGSAALLDSKG-----------MKKNKAKLKSVAPSTKKTAAIGQKGKKRNVSQSSEQPV 49

Query: 59   --RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLN 116
              RK PKR AACTDFKE+SVRISE S  +E K+DQ   +E+VAV LT+ Q  D PNRRL 
Sbjct: 50   GSRKMPKRAAACTDFKERSVRISEISATIETKRDQLVYEEVVAVHLTSEQHEDHPNRRLT 109

Query: 117  DFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYE 176
            DFILHD +G PQP EM E+DDL ISGLILPL+ESSD+EK+KGVRCEGFGRIESW+ISGYE
Sbjct: 110  DFILHDSDGQPQPFEMSEVDDLLISGLILPLEESSDKEKQKGVRCEGFGRIESWAISGYE 169

Query: 177  DGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDEL 236
            DGSPVIW+STD+ADYDC+KPASSYK +Y+ FFEKARAC+EV++KLSK+SGGN D S+DEL
Sbjct: 170  DGSPVIWVSTDVADYDCVKPASSYKNFYDHFFEKARACVEVFRKLSKSSGGNPDLSLDEL 229

Query: 237  LAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKE 296
            LA VVRSMS S+CF GG SIKDF+ISQGEFI+NQLIGL+ TS ++DQ FAELPVLVAL++
Sbjct: 230  LASVVRSMSASRCFSGGGSIKDFIISQGEFIYNQLIGLEATSNQSDQIFAELPVLVALRD 289

Query: 297  ESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEEL 356
            E  KR +F++    S GG+   G ++ D   + D+        +E++D KLARLLQEEE 
Sbjct: 290  EGCKRGDFMKAKGGSSGGSSMSGLRIRDIGNEADE------SFEENDDVKLARLLQEEEY 343

Query: 357  WQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDI 416
            WQS KQKK+QGS    NK+YIKINEDEIANDYP P +Y+ S +E DE L +DSD   CD 
Sbjct: 344  WQSIKQKKSQGSAPLSNKYYIKINEDEIANDYPLPAYYKTSNQETDEFLVFDSDIYMCDT 403

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
            D+LPR MLH+WSLYNSDSRLISLELLPMKPC DIDVTIFGSG + +D+GSGFCLDTD   
Sbjct: 404  DELPRSMLHNWSLYNSDSRLISLELLPMKPCADIDVTIFGSGVVTADDGSGFCLDTDLGH 463

Query: 477  CTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPV 536
             +SG  G Q+  G PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQYAPWYEPV
Sbjct: 464  SSSG-QGPQEVDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPWYEPV 522

Query: 537  LKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQI 596
            LKTAR+AISIIT+LKEQ+R++RLSF DVIKR+SE KKD  +YISS+PAAVERYVVVHGQI
Sbjct: 523  LKTARLAISIITLLKEQSRIARLSFADVIKRVSEFKKDHPAYISSNPAAVERYVVVHGQI 582

Query: 597  VLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQK-SEINLNPRASMGPVVV 655
            +LQ FAE+PDE IK+ AF+IGL KKMEERHHTKW+VKK+KV   SE N+NPRA+M PV+ 
Sbjct: 583  ILQQFAEFPDENIKRSAFVIGLAKKMEERHHTKWVVKKRKVVHKSEPNMNPRAAMAPVI- 641

Query: 656  SKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKL 715
            SKRKVMQATTTR+INRIWGEYYSNYSPED KE  +C   E+EEVEEQ ENEEDD EEE+L
Sbjct: 642  SKRKVMQATTTRMINRIWGEYYSNYSPEDSKEGASCIEKEEEEVEEQEENEEDDAEEEEL 701

Query: 716  I-SEERQISCSVAVQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLV 772
            + SE+ Q  CS++ Q K  ST KEI W+GE V K+  G +LYK+AIV G+ +++G  VLV
Sbjct: 702  LGSEKTQRPCSLSRQSKLHSTNKEIRWDGEFVGKTRNGESLYKQAIVCGDKIAVGDTVLV 761

Query: 773  EVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLEL 832
            EVDE D+L + YFVEYMFE+  G K+FHG +MQ GS TVLGNTANERE+F  N+C + EL
Sbjct: 762  EVDESDELTITYFVEYMFESLDGRKMFHGRMMQHGSQTVLGNTANERELFTTNECVEFEL 821

Query: 833  QDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
            QDIKQTV+V+IR  PWGHQHRK+ AN DK+D+A AEERK+KGLP EYYCKSLYWPERGAF
Sbjct: 822  QDIKQTVLVEIRRRPWGHQHRKENANFDKIDKASAEERKRKGLPIEYYCKSLYWPERGAF 881

Query: 893  FILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFT 951
            F LP D+MGLG G CH+C  KES+KEK++FKV+S KTSFVY   EY V+D+VY+SP HF 
Sbjct: 882  FSLPFDTMGLGTGFCHSCEIKESQKEKDSFKVNSCKTSFVYKGTEYSVNDFVYVSPQHFA 941

Query: 952  WDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKA 1011
             ++AE  TFKAGRNVGLK YVVCQ+LEI+VPK PK AE KS QV+VRRFFRP+DISAEKA
Sbjct: 942  AERAETGTFKAGRNVGLKAYVVCQMLEIVVPKVPKIAETKSIQVQVRRFFRPEDISAEKA 1001

Query: 1012 YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSL 1071
            YCSDIREVYYSEETH + VE I GKCEV KK+D+P C+ PAIF H+FFCE L+DPSKG L
Sbjct: 1002 YCSDIREVYYSEETHSVPVETIEGKCEVMKKHDLPPCDVPAIFDHVFFCERLYDPSKGCL 1061

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            KQLPAHIKLRYS+     +AA+R+KKGK  EGE++LEVE+Q  A  EN LATLDIFAGCG
Sbjct: 1062 KQLPAHIKLRYSARKEVDDAAARKKKGKAKEGENDLEVERQIDAFHENRLATLDIFAGCG 1121

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
            GLSEGLQQSG+S TKWAIEYEEPAG+AFKLNHPESLM INNCNVILRAVMEKCGD +DC+
Sbjct: 1122 GLSEGLQQSGVSVTKWAIEYEEPAGDAFKLNHPESLMFINNCNVILRAVMEKCGDDDDCI 1181

Query: 1192 STSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1251
            STSEAAELAA+L E  INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF
Sbjct: 1182 STSEAAELAAALGEKDINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1241

Query: 1252 LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
            LSFADYF+P++FLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA+GVSQSRK
Sbjct: 1242 LSFADYFRPKFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVSQSRK 1301

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIG 1371
            RAFIWAASP +TLPEWPEPMHVFA PELKI LS+N QY+AVRSTA GAPFRA+TVRDTIG
Sbjct: 1302 RAFIWAASPEETLPEWPEPMHVFAVPELKITLSENMQYAAVRSTATGAPFRAITVRDTIG 1361

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            DLP V NGAS T +EYQNDPVSWFQK+IRGNM VL DHISKEMNELNLIRCQKIPK+PGA
Sbjct: 1362 DLPDVKNGASITNLEYQNDPVSWFQKKIRGNMVVLMDHISKEMNELNLIRCQKIPKQPGA 1421

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
            DWH LPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK
Sbjct: 1422 DWHSLPDEKVKLSTGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1481

Query: 1492 VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            VGMCFHP+QDRIL+VRECARSQGF DSYQF G+IQHKHRQIGNAVPP L+FALGRKLKEA
Sbjct: 1482 VGMCFHPEQDRILSVRECARSQGFRDSYQFAGNIQHKHRQIGNAVPPPLSFALGRKLKEA 1541

Query: 1552 VESKRS 1557
            V+SKRS
Sbjct: 1542 VDSKRS 1547


>gi|224077654|ref|XP_002305346.1| DNA methyltransferase [Populus trichocarpa]
 gi|222848310|gb|EEE85857.1| DNA methyltransferase [Populus trichocarpa]
          Length = 1529

 Score = 2283 bits (5917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1092/1503 (72%), Positives = 1279/1503 (85%), Gaps = 12/1503 (0%)

Query: 61   RPKRMAACTDFKEKSVRI-SEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFI 119
            RP+R AAC DFKEKS+R+  EKS +VE+KK+Q  ++EI+A+ LT  Q+  RPNRRL DF+
Sbjct: 30   RPRRAAACKDFKEKSLRLHEEKSSVVESKKEQVVNEEILALRLTQGQEEGRPNRRLIDFV 89

Query: 120  LHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGS 179
            +HD NG PQPLEM+E+DD+FISG+I+PL+ES D+EKE  VRCEGFGRIE+W+ISGYEDGS
Sbjct: 90   VHDANGNPQPLEMIEVDDMFISGVIMPLEESLDKEKEVPVRCEGFGRIEAWNISGYEDGS 149

Query: 180  PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAG 239
            PVIWL+T++ADYDC+KP+  YKK+++ FF+KA ACIEVYKKLS+ SGGN + ++DELLAG
Sbjct: 150  PVIWLTTEVADYDCIKPSGGYKKFFDRFFQKALACIEVYKKLSRFSGGNPEFTLDELLAG 209

Query: 240  VVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESS 299
            VVR+MSG+KCF G  S+K+F++SQGEFI+ Q+ GLD+TSKKND+ F++LP LVAL++ES 
Sbjct: 210  VVRAMSGNKCFSGAPSVKNFLVSQGEFIYQQITGLDQTSKKNDKFFSDLPALVALRDESR 269

Query: 300  KRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQS 359
               + +   AA+ GGNL I  K  DG   ++Q   S+  A+EDEDAKLARLLQEEE W S
Sbjct: 270  NHGSVLLAKAANPGGNLVIDPKSVDG-AIVNQSNQSSTIAEEDEDAKLARLLQEEEYWHS 328

Query: 360  K-KQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQ 418
              +QKK++GS S  N  YIKINEDEIANDYP PVFY+ S+EE DE +   SD      D 
Sbjct: 329  NMRQKKSRGSASASNTIYIKINEDEIANDYPLPVFYKHSDEETDEYVVVASDDVIDHPDD 388

Query: 419  LPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCT 478
            LPR+MLH+WSLYNSDSRLISLELLPMKPCEDIDVTIFGSG+M  D+GSGFCLD D  Q +
Sbjct: 389  LPRKMLHNWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGRMTEDDGSGFCLDDDPDQSS 448

Query: 479  SGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLK 538
            S  S AQD  G PI+LS+IKEWMIEFGSSMIFISIRTD+AWYRLGKPSKQY  WY+PVLK
Sbjct: 449  SRGSEAQDDMGLPIFLSAIKEWMIEFGSSMIFISIRTDMAWYRLGKPSKQYGSWYKPVLK 508

Query: 539  TARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVL 598
            T ++A SIIT+LKEQ+RVSRLSF DVI+++SE KKD H+YISSDPAA+ERYVVVHGQI+L
Sbjct: 509  TVKLARSIITLLKEQSRVSRLSFADVIRKVSEFKKDHHAYISSDPAAIERYVVVHGQIIL 568

Query: 599  QLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKK-VQKSEINLNPRASMGPVVV-S 656
            QLFAE+PD++IKKCAF++GL +KMEERHHTKW+V KK  VQK + NLNPRA+M  V   S
Sbjct: 569  QLFAEFPDQKIKKCAFVVGLTRKMEERHHTKWVVNKKAIVQKFQSNLNPRAAMDTVAPGS 628

Query: 657  KRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLI 716
            KRK+MQATTTRLINRIWGEYYSNYSPED +E   CE  E++E EEQ ENE+DD EE   +
Sbjct: 629  KRKLMQATTTRLINRIWGEYYSNYSPEDLEEGAECEVKEEDEAEEQYENEDDDKEE---V 685

Query: 717  SEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEV 774
             E+     SV+ + KS +++KE+ W+G  V K  SG A+YK+AIV GEV+ +G AVLVEV
Sbjct: 686  VEKTLKPRSVSERTKSHTSQKEVRWDGNPVSKTSSGEAIYKRAIVCGEVIVVGDAVLVEV 745

Query: 775  DELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQD 834
            DE D+LP IYFVEYMFE   G ++FHG +M+RGS TVLGNTAN+REVFL  +C + +LQD
Sbjct: 746  DESDELPAIYFVEYMFETRNGSRMFHGRMMKRGSETVLGNTANDREVFLTTECMNYKLQD 805

Query: 835  IKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFI 894
             KQ +++++   PWGH HRKD  NAD++DR +AEERKKKGL  EYYCKSLYWPERGAFF 
Sbjct: 806  AKQAIILEVLKRPWGHDHRKDNINADRIDREKAEERKKKGLQVEYYCKSLYWPERGAFFT 865

Query: 895  LPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWD 953
            LP+D+MGLG G CH+C  K +E++K+ F+V+S +T F Y   EY VHD+VY+SPH F  +
Sbjct: 866  LPLDTMGLGSGVCHSCNLKIAEEDKDIFRVNSSQTGFSYKGTEYSVHDFVYVSPHQFASE 925

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013
            + E ETFK GRNVGLKPYVVCQLLE+++ KEPK+AE +STQV V+RFFRPDDIS EKAYC
Sbjct: 926  RGENETFKGGRNVGLKPYVVCQLLEVVL-KEPKQAETRSTQVNVQRFFRPDDISPEKAYC 984

Query: 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQ 1073
            SDIRE+YYSEETHL+ VE I GKCEVRKKNDIP C+APAIF +IFFCEH++DPSKGSLKQ
Sbjct: 985  SDIREIYYSEETHLLSVETIEGKCEVRKKNDIPTCSAPAIFDNIFFCEHMYDPSKGSLKQ 1044

Query: 1074 LPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGL 1133
            LPA +K ++S+ S D + ASR++KGK  EGE+++E +KQ  AS EN LATLDIFAGCGGL
Sbjct: 1045 LPAQVKSKFSAVSRDGDVASRKRKGKSKEGENDIEADKQREASPENRLATLDIFAGCGGL 1104

Query: 1134 SEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVST 1193
            SEGLQQ+G+SSTKWAIEYEEPAGEAFKLNH  SLM INNCNVILRAVMEKCGDA+DC+ST
Sbjct: 1105 SEGLQQAGVSSTKWAIEYEEPAGEAFKLNHAGSLMFINNCNVILRAVMEKCGDADDCIST 1164

Query: 1194 SEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS 1253
            SEA ELA+SLD  VI+ LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS
Sbjct: 1165 SEAGELASSLDAKVIDGLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS 1224

Query: 1254 FADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            FADYF+P+YFLLENVRNFVSFNKGQTFRLT+ASLL+MGYQVRFGILEAGA+GVSQSRKRA
Sbjct: 1225 FADYFRPKYFLLENVRNFVSFNKGQTFRLTIASLLQMGYQVRFGILEAGAYGVSQSRKRA 1284

Query: 1314 FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDL 1373
            FIWAASP + LPEWPEPMHVFAAPELKI LS+  QYSAVRSTA GAPFRA+TVRDTIGDL
Sbjct: 1285 FIWAASPEEILPEWPEPMHVFAAPELKITLSEKSQYSAVRSTAYGAPFRAITVRDTIGDL 1344

Query: 1374 PAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADW 1433
            P VGNGASKT +EY NDPVSWFQK+IRG+M VLTDHISKEMNELNLIRC+KIPKRPGADW
Sbjct: 1345 PDVGNGASKTNLEYGNDPVSWFQKKIRGDMVVLTDHISKEMNELNLIRCKKIPKRPGADW 1404

Query: 1434 HDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG 1493
             DLPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG
Sbjct: 1405 RDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG 1464

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            MCFHP+QDRILTVRECARSQGFPDSYQF G+I HKHRQIGNAVPP L++ALGRKLKEA++
Sbjct: 1465 MCFHPEQDRILTVRECARSQGFPDSYQFSGNIHHKHRQIGNAVPPPLSYALGRKLKEALD 1524

Query: 1554 SKR 1556
            SKR
Sbjct: 1525 SKR 1527


>gi|359480931|ref|XP_002267284.2| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis
            vinifera]
          Length = 1530

 Score = 2280 bits (5909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1113/1522 (73%), Positives = 1275/1522 (83%), Gaps = 9/1522 (0%)

Query: 38   KDSTSGQKEKMKKLSQDSEEP---RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYAD 94
            K + +GQKEK + +SQ SE+P   RK PKR A CTDFKE SV ISEKS  +E K+DQ   
Sbjct: 9    KPAATGQKEK-RNVSQSSEQPVGSRKMPKRAAECTDFKETSVHISEKSVPMETKRDQLVY 67

Query: 95   DEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDRE 154
            +E VAV LT+RQ  D PNRRL DFI HD +G PQP E  E+DDL ISGLILPL+ESSD++
Sbjct: 68   EEDVAVQLTSRQLEDCPNRRLTDFIFHDSDGQPQPFEFSEVDDLLISGLILPLEESSDKQ 127

Query: 155  KEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
            K+KGVRCEGFG IESWSISGYEDGSPVI LSTD+ADYDC+KPA+SYKK+Y+ FFEKARAC
Sbjct: 128  KQKGVRCEGFGPIESWSISGYEDGSPVISLSTDVADYDCIKPANSYKKFYDHFFEKARAC 187

Query: 215  IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
            +EVY+KLSK+SGGN D S+D+LLA VVRSMS SKCF  G SIKDF+I QGEFI NQLIGL
Sbjct: 188  VEVYRKLSKSSGGNPDLSLDKLLASVVRSMSASKCFSSGGSIKDFIILQGEFIHNQLIGL 247

Query: 275  DETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGS 334
            DETS +NDQ F+ELPVL+AL+ E  KR  F++  AAS GG+     ++ D + ++D+ GS
Sbjct: 248  DETSNQNDQTFSELPVLLALRYEGYKRREFMKAKAASSGGSYMSDMEIRDAENEVDESGS 307

Query: 335  STCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFY 394
            S   ++E++D KLARLLQEEE W+S KQKK+QGS    NK+YIKINEDEIANDYP P +Y
Sbjct: 308  SIYASEENDDVKLARLLQEEEYWKSTKQKKSQGSAPLSNKYYIKINEDEIANDYPLPAYY 367

Query: 395  RPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTI 454
            + S +E DE   +DSD   CD D+LPR MLH+WSLYNSDSRLISLELLPMKPC DIDVTI
Sbjct: 368  KTSNQETDEFFVFDSDIYMCDTDELPRSMLHNWSLYNSDSRLISLELLPMKPCADIDVTI 427

Query: 455  FGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIR 514
            FGSG M +D+GSGFCLDTD    +S   G QD GG PIYLS+IKEWMIEFGSSM+FISIR
Sbjct: 428  FGSGVMTADDGSGFCLDTDLGHSSSSDQGPQDVGGIPIYLSAIKEWMIEFGSSMVFISIR 487

Query: 515  TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
            TD+AWYRLGKPSKQY PWYEPVLKTAR+ ISIIT+LKEQ+RV+RLSF + IKR+SE +KD
Sbjct: 488  TDMAWYRLGKPSKQYTPWYEPVLKTARLGISIITLLKEQSRVARLSFAEAIKRVSEFEKD 547

Query: 575  QHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
              +YISS+PA VERYV+VHGQI+LQ FAE+PD  IK+ AF+ GL KKMEERHHTKW+VKK
Sbjct: 548  HPAYISSNPADVERYVIVHGQIILQQFAEFPDGNIKRSAFVTGLAKKMEERHHTKWVVKK 607

Query: 635  KKVQK-SEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEA 693
            KKV   SE NLNPR +M PV+ SK+KVMQATTTR+INRIWGEYYSNYSPED K+  +C  
Sbjct: 608  KKVVHKSEPNLNPRVAMAPVM-SKKKVMQATTTRMINRIWGEYYSNYSPEDAKDGASCIV 666

Query: 694  NEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGL 751
             E+E  E++   E+D  EEE    E+ Q   S+  + K  ST KEI W+GE V K  SG 
Sbjct: 667  KEEEVEEQEENEEDDAEEEELSALEKTQRPSSLPGRSKLHSTSKEIRWDGEFVGKTSSGD 726

Query: 752  ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTV 811
             LYK+AI+ G+ V++G  VLVEVDE D+LPVIY +E MFE+  G K+FHG +MQRGS T+
Sbjct: 727  TLYKQAIIGGDKVTVGGVVLVEVDESDELPVIYLIECMFESFNGRKMFHGRMMQRGSQTL 786

Query: 812  LGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERK 871
            LGNTAN RE+FL N+C + ELQ IKQ VVVDIR +PWGHQHRK+ AN DK+DRA +EERK
Sbjct: 787  LGNTANARELFLTNECLEFELQGIKQMVVVDIRRMPWGHQHRKENANFDKIDRANSEERK 846

Query: 872  KKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSF 930
            +KGLP++YYCKSLYWPERGAFF LP D+MG+G G CH+C  KES+KEK++ KV+S KTSF
Sbjct: 847  RKGLPSDYYCKSLYWPERGAFFSLPFDTMGIGTGFCHSCKIKESQKEKDSIKVNSCKTSF 906

Query: 931  VYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEV 990
            VY   EY + ++VY+SP +F  D+ E  TFKAGRNVGLK YVVCQ++ IIVPK PK AE 
Sbjct: 907  VYKGTEYSIDEFVYVSPQYFAVDRMEIGTFKAGRNVGLKAYVVCQMMGIIVPKAPKIAEA 966

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            KST VK+RRFFRP+DISAEKAY SDIREV+YSEETH + VE I GKCEV +K+D+P+C+ 
Sbjct: 967  KSTLVKLRRFFRPEDISAEKAYTSDIREVFYSEETHFVPVEMIEGKCEVIQKHDLPSCDV 1026

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A F+HIFFCEHL +PSKGSLKQLP HIK+RYS+     +AA+R++KGK   GED+L+VE
Sbjct: 1027 LATFEHIFFCEHLFEPSKGSLKQLPVHIKMRYSARKAVDDAATRKRKGKGKVGEDDLKVE 1086

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
            +Q  A QEN LATLDIFAGCGGLSEGLQQSG+S TKWAIEYEEPAG+AFKLNHPES M I
Sbjct: 1087 RQKTAFQENCLATLDIFAGCGGLSEGLQQSGVSVTKWAIEYEEPAGDAFKLNHPESSMFI 1146

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
            NNCNVILRAVMEKCGDA+DC+STSEAAELA SL E  INNLPLPGQVDFINGGPPCQGFS
Sbjct: 1147 NNCNVILRAVMEKCGDADDCLSTSEAAELATSLGEKDINNLPLPGQVDFINGGPPCQGFS 1206

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM 1290
            GMNRFNQSTWSKVQCEMILAFLSFADYF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEM
Sbjct: 1207 GMNRFNQSTWSKVQCEMILAFLSFADYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEM 1266

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
            GYQVRFGILEAGA+GVSQSRKR FIWAASP +TLPEWPEPMHVFA PELKI LS N QY+
Sbjct: 1267 GYQVRFGILEAGAYGVSQSRKRVFIWAASPEETLPEWPEPMHVFAVPELKITLSKNMQYA 1326

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
            AVRSTA GAPFRA+TVRDTIGDLPAV NGASKT +EYQN PVSWFQK+IRGNM VLTDHI
Sbjct: 1327 AVRSTATGAPFRAITVRDTIGDLPAVTNGASKTGLEYQNGPVSWFQKKIRGNMMVLTDHI 1386

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
            SKEMNELNLIRCQKIPK+PGADW  LPDEKV LSTGQVVDLIPWCLPNTAKRHNQWKGLF
Sbjct: 1387 SKEMNELNLIRCQKIPKQPGADWRSLPDEKVALSTGQVVDLIPWCLPNTAKRHNQWKGLF 1446

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDR+++VRECARSQGFPDSY+F G+IQHKHR
Sbjct: 1447 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRLVSVRECARSQGFPDSYKFSGNIQHKHR 1506

Query: 1531 QIGNAVPPTLAFALGRKLKEAV 1552
            QIGNAVPP LAFALGRKLKEAV
Sbjct: 1507 QIGNAVPPPLAFALGRKLKEAV 1528


>gi|224144433|ref|XP_002325288.1| DNA methyltransferase [Populus trichocarpa]
 gi|222862163|gb|EEE99669.1| DNA methyltransferase [Populus trichocarpa]
          Length = 1549

 Score = 2279 bits (5906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1104/1550 (71%), Positives = 1290/1550 (83%), Gaps = 22/1550 (1%)

Query: 24   KNKKRKPKSEVPETKDSTSGQKEKMKKLSQ---DSEEPR------KRPKRMAACTDFKEK 74
            KNKK K KS V   K     +  K KK +    + EEP       KRPKR AAC DFKEK
Sbjct: 3    KNKKGKQKSSVSNVKKEVPEKNTKGKKRNSPDTNKEEPTGGDGSLKRPKRAAACKDFKEK 62

Query: 75   SVRI-SEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEML 133
            SVR+  EKSY+VE+KK+Q  D+EI+AV LT  Q+  RPNRRL DF++HD NG PQPLEM+
Sbjct: 63   SVRLHEEKSYVVESKKEQVVDEEILAVRLTQGQEEGRPNRRLIDFVVHDANGNPQPLEMV 122

Query: 134  EIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDC 193
            E+DD+FISG+I+P +ES D+EKE  VRC+GFGRIE+W ISGYEDGSPVIWLST++ADYDC
Sbjct: 123  EVDDMFISGIIMPHEESLDKEKEVHVRCDGFGRIEAWDISGYEDGSPVIWLSTEVADYDC 182

Query: 194  LKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGG 253
            +KPA  YKK+++ FF+KA AC+EVYKKLS+ SGGN + ++DELLAGVVR+MSG+KCF G 
Sbjct: 183  IKPAGGYKKFFDHFFQKALACVEVYKKLSRFSGGNPEFTLDELLAGVVRAMSGNKCFSGA 242

Query: 254  VSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLG 313
            VSIK+F+ISQGEFI++Q+IGLDETS KND+KFA+LPVLVAL++ES    N +   AA+ G
Sbjct: 243  VSIKNFLISQGEFIYHQIIGLDETSTKNDKKFADLPVLVALRDESRNHGNVLIAKAANSG 302

Query: 314  GNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSK-KQKKTQGSTSGM 372
            GNL IG +  DG   ++Q   S+   +EDEDAKLARLLQ+EE WQS  +QKK++GS S  
Sbjct: 303  GNLVIGPESVDG-AVVNQSNQSSTTVEEDEDAKLARLLQDEEYWQSNMRQKKSRGSVSAS 361

Query: 373  NKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNS 432
            N  YIKINEDEIANDYP P FY+ S EE DE +A  SD      D LPRRMLH+WSLYNS
Sbjct: 362  NTIYIKINEDEIANDYPLPAFYKHSNEETDEYIAVASDDVIDHPDDLPRRMLHNWSLYNS 421

Query: 433  DSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPI 492
            DSRLISLELLPMKPCEDIDVTIFGSG M  D+GSGFCLD    Q +S    AQD  G PI
Sbjct: 422  DSRLISLELLPMKPCEDIDVTIFGSGSMTEDDGSGFCLDDGPDQSSSRGLEAQDDMGLPI 481

Query: 493  YLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKE 552
            +LS+IKEWMIEFGSSMIFIS+RTD+AWYRLGKPSKQYA WY+PVLKT ++A +IIT+LKE
Sbjct: 482  FLSAIKEWMIEFGSSMIFISLRTDMAWYRLGKPSKQYASWYKPVLKTVKLARTIITLLKE 541

Query: 553  QTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKC 612
            Q+RVSRLSF DVI+++SE KKD H+YISSD AAVERYVVVHGQI+LQLFAE+PD++IKKC
Sbjct: 542  QSRVSRLSFADVIRKVSEFKKDHHAYISSDLAAVERYVVVHGQIILQLFAEFPDQKIKKC 601

Query: 613  AFIIGLMKKMEERHHTKWLVKKKK-VQKSEINLNPRASMGPVV--VSKRKVMQATTTRLI 669
            AF++GL + MEERHHTKW+V KK  VQK   NLNPRA+M  V    SKRK+MQATTTRLI
Sbjct: 602  AFVVGLTRMMEERHHTKWVVNKKAIVQKCHSNLNPRAAMDTVASGASKRKLMQATTTRLI 661

Query: 670  NRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQ 729
            NRIWGEYYSNYSPED KE   C+    +E +E  E +E++ ++++++ E+     SV   
Sbjct: 662  NRIWGEYYSNYSPEDLKEGNDCDV---KEEDELEEQDENEDDDKEVVVEKTLKPYSVFEH 718

Query: 730  IKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVE 787
             KS +++KE+ W+G  VRK  SG  +YK+AIV G+V+ +G+AVLVEVDE D+LP IYFVE
Sbjct: 719  CKSHTSQKEVRWDGNPVRKISSGEDIYKQAIVCGQVIVVGAAVLVEVDEPDELPAIYFVE 778

Query: 788  YMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP 847
            YMFE   G K+FHG +M+ GS TVLGNTAN+REVFL N+C + +LQD+KQT+++++R  P
Sbjct: 779  YMFETRNGSKMFHGRMMKWGSETVLGNTANDREVFLTNECMNYKLQDVKQTIILEVRKRP 838

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSC 907
            WGH HRKD ANAD++DR +AEERKKKGLP EYYCKSLYWPERGAFF LP D+MGLG G C
Sbjct: 839  WGHHHRKDNANADRIDREKAEERKKKGLPLEYYCKSLYWPERGAFFTLPFDTMGLGSGVC 898

Query: 908  HACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNV 966
            H+C  K SE++K   KV+S +T F Y   EY VHD+VY++PH F  +  E ETFK GRNV
Sbjct: 899  HSCNLKISEEDKNISKVNSSQTGFSYKGTEYSVHDFVYVNPHQFAVESGETETFKGGRNV 958

Query: 967  GLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETH 1026
            GLKPY VCQLLE+ VP E K++E +ST+VKV+RFFRPDDIS EKAYCSDIRE+YYSEETH
Sbjct: 959  GLKPYAVCQLLEV-VPMETKQSETRSTEVKVQRFFRPDDISPEKAYCSDIREIYYSEETH 1017

Query: 1027 LIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGS 1086
            L+ VE I GKCEVRKK DIP C+APAIF H FFCEH++DPS GSLKQLPAHIK ++S+ S
Sbjct: 1018 LLSVEVIEGKCEVRKKIDIPTCSAPAIFDHTFFCEHMYDPSNGSLKQLPAHIKSKFSAVS 1077

Query: 1087 LDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTK 1146
             D + ASR++KGK  EGE++ E +KQ  AS E  LATLDIFAGCGGLSEGLQQ+G+S+TK
Sbjct: 1078 KDGDVASRKRKGKSKEGENDTEDDKQLEASPEYRLATLDIFAGCGGLSEGLQQAGVSTTK 1137

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIEYEEPAGEAFKLNH ESLM INNCNVILRAVME+CGDA+DC+STSEAA++A+SLD  
Sbjct: 1138 WAIEYEEPAGEAFKLNHAESLMFINNCNVILRAVMERCGDADDCISTSEAAKMASSLDAK 1197

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            VI+ LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF+P+YFLLE
Sbjct: 1198 VIDGLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFRPKYFLLE 1257

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSFNKGQTFRLT+ASLL+MGYQVRFGILEAGA+GVSQSRKRAFIWAASP + LPE
Sbjct: 1258 NVRNFVSFNKGQTFRLTIASLLQMGYQVRFGILEAGAYGVSQSRKRAFIWAASPEEILPE 1317

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
            WPEPMHVFAAPELKI LS+  QY+AVRSTA GAPFRA+TVRDTIGDLP V NGASKT +E
Sbjct: 1318 WPEPMHVFAAPELKITLSEKSQYAAVRSTAYGAPFRAITVRDTIGDLPDVANGASKTNLE 1377

Query: 1387 YQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG 1446
            Y NDP+SWFQK+IRG+M VLTDHISKEMNELNLIRC+ IPKRPGADW DLPDEKVKLSTG
Sbjct: 1378 YGNDPISWFQKKIRGDMVVLTDHISKEMNELNLIRCKNIPKRPGADWRDLPDEKVKLSTG 1437

Query: 1447 QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTV 1506
            Q+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP+QDRILTV
Sbjct: 1438 QMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRILTV 1497

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            RECARSQGFPD+YQF G+IQHKHRQIGNAVPP LA+ALGRKLKEA++SKR
Sbjct: 1498 RECARSQGFPDNYQFFGNIQHKHRQIGNAVPPPLAYALGRKLKEALDSKR 1547


>gi|357498929|ref|XP_003619753.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
 gi|355494768|gb|AES75971.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
          Length = 1573

 Score = 2232 bits (5784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1092/1581 (69%), Positives = 1288/1581 (81%), Gaps = 33/1581 (2%)

Query: 1    MGSAALLDSKESN-----------DQKATDSSEMKNKKRKPKSEVPETKD-STSGQKEKM 48
            MGSA+LL+S +              +    +  +K+   K    V  T++   +G K+K 
Sbjct: 1    MGSASLLNSSDPGVEENGVIGIYLGKTVQRTQGVKDSTSKEDPVVSNTEEEDMAGGKQKK 60

Query: 49   KKLSQDSEEP---RKRPKRMA--ACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLT 103
            + LS+ +E+P   RK PKR A  A  + KEKS   S+KS L+E KKDQ  ++E +AV +T
Sbjct: 61   RSLSESNEQPAPTRKMPKRSASAASKNLKEKSFSKSDKSDLIETKKDQVVEEEFLAVRMT 120

Query: 104  ARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEG 163
            A Q+  RPNRRL DFILHDE+G  Q LEMLE++DLFI+GLILPL+ S+D++KE+GVRCEG
Sbjct: 121  AGQEDGRPNRRLTDFILHDESGAAQQLEMLELNDLFITGLILPLEASTDKKKEQGVRCEG 180

Query: 164  FGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSK 223
            FGRIESW ISGYE+G+PVIW+STDIADYDCLKPA+SYKKYY+ FFEKARACIEVYKKL+K
Sbjct: 181  FGRIESWDISGYEEGAPVIWISTDIADYDCLKPAASYKKYYDQFFEKARACIEVYKKLTK 240

Query: 224  TSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQ 283
            ++GG+ D S+DELLAG+ R+MSGSK F G  S+K+F+ISQG+FI+ QLIGLD T K ND+
Sbjct: 241  SAGGDPDISLDELLAGLARTMSGSKYFSGAASLKEFIISQGDFIYKQLIGLDMTLKANDK 300

Query: 284  KFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDE 343
             F E+P L AL++ES K+ NF           L IGS  GD + K DQ        +EDE
Sbjct: 301  GFTEIPALAALRDESKKQTNFANAQVMPSNATLRIGSGTGDEE-KKDQMAVD----EEDE 355

Query: 344  DAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDE 403
            DAKLARLLQEEE W+SKKQ+K   S+S  NKFYIKINEDEIANDYP P +Y+ S +E DE
Sbjct: 356  DAKLARLLQEEEYWKSKKQRKNPRSSSSSNKFYIKINEDEIANDYPLPAYYKTSLQETDE 415

Query: 404  LLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISD 463
             + +D+DYD  D + LPR MLH+W+LYNSDSRLISLELLPMKPC +IDVTIFGSG M SD
Sbjct: 416  FIVFDNDYDVYDTEDLPRSMLHNWALYNSDSRLISLELLPMKPCSEIDVTIFGSGVMTSD 475

Query: 464  EGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLG 523
            +GSGF LDT++ Q +S  SG Q   G PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLG
Sbjct: 476  DGSGFNLDTEAGQSSSA-SGEQATDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLG 534

Query: 524  KPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDP 583
            KPSKQY+PWY+ VLKTAR+AISIIT+LKEQ+RVSRL+F DVIK++SE  +D  SYISSDP
Sbjct: 535  KPSKQYSPWYDTVLKTARIAISIITLLKEQSRVSRLTFGDVIKKVSEFSQDNKSYISSDP 594

Query: 584  AAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKV-QKSEI 642
             AVERYVVVHGQI+LQLFAE+PDE+I+KC F+ GL  KME RHHTKWL+KKKKV  +SE 
Sbjct: 595  LAVERYVVVHGQIILQLFAEFPDEKIRKCPFVAGLTSKMEARHHTKWLMKKKKVLPRSEP 654

Query: 643  NLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQ 702
            NLNPRA+M PVV SKRK MQATTT+LIN+IWGEYYSN+ PED KE  A E  +D++  E+
Sbjct: 655  NLNPRAAMAPVV-SKRKAMQATTTKLINKIWGEYYSNHLPEDSKEVIASEVKDDDDEAEE 713

Query: 703  GENEEDDTEEEK---LISEERQISCSVAVQIKSRSTKKEITWEG--ECVRKSGLALYKKA 757
             E EE+D E+ +   ++ E  Q   SV+ Q K+ S   EI WEG  E    SGL LYK+A
Sbjct: 714  QEQEENDDEDAEVETVLLEGMQKPHSVSKQTKAFSDDGEIRWEGGPEGKTSSGLLLYKQA 773

Query: 758  IVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTAN 817
            I+HGEVVS+G++V VEVDE D+LP IY+VEYMFE+ GG K+FHG +MQ G  TVLGN AN
Sbjct: 774  IIHGEVVSIGTSVSVEVDESDELPDIYYVEYMFESKGGKKMFHGRMMQHGCQTVLGNAAN 833

Query: 818  EREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPT 877
            EREVFL N+CRDL LQ++KQ  V  IR  PWGHQHRK+   ADK+DR RAEE KKKGLPT
Sbjct: 834  EREVFLTNECRDLGLQNVKQINVASIRKTPWGHQHRKNTIIADKIDRERAEESKKKGLPT 893

Query: 878  EYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAE 936
            EYYCKSLYWPERGAFF LP D++GLG G C +C  +E+E+EK+ FK++S K+SFV    E
Sbjct: 894  EYYCKSLYWPERGAFFSLPFDTLGLGSGVCQSCQLQEAEEEKDVFKINSSKSSFVLEGTE 953

Query: 937  YFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVK 996
            Y ++DYVY+SP  F  +K E  T K+GRNVGL+ YV+CQ+LEII  KE K+AE+KST +K
Sbjct: 954  YSLNDYVYVSPFEFE-EKIEQGTHKSGRNVGLRAYVICQVLEIIAKKETKQAEIKSTDIK 1012

Query: 997  VRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQH 1056
            VRRFFRP+D+S+EKAYCSD++EVYYS+E   I V++I GKCEVRKK D+P   AP IF +
Sbjct: 1013 VRRFFRPEDVSSEKAYCSDVQEVYYSDEACTISVQSIEGKCEVRKKIDVPEGCAPGIFHN 1072

Query: 1057 IFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGAS 1116
            IFFCE L+DP+ G+LK+LPAHIK++YS+G   ++AA+R+KKGKC EG++  E + +   S
Sbjct: 1073 IFFCELLYDPATGALKKLPAHIKVKYSTGHT-ADAAARKKKGKCKEGDNISEPDPERKTS 1131

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
             E  LATLDIFAGCGGLSEGL QSG+SSTKWAIEYEEPAG AFK NHPE+L+ INNCNVI
Sbjct: 1132 NEKRLATLDIFAGCGGLSEGLHQSGVSSTKWAIEYEEPAGNAFKANHPEALVFINNCNVI 1191

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
            LRA+MEKCGD +DC++T+EAAELA+ LDE  ++NLPLPGQVDFINGGPPCQGFSGMNRFN
Sbjct: 1192 LRAIMEKCGDIDDCITTTEAAELASKLDEKDLSNLPLPGQVDFINGGPPCQGFSGMNRFN 1251

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
             STWSKVQCEMILAFLSFADYF+PRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF
Sbjct: 1252 TSTWSKVQCEMILAFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1311

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
            GILEAGAFGVSQSRKRAFIWAASP D LPEWPEPMHVF+APELKI LS+N QY+AVRSTA
Sbjct: 1312 GILEAGAFGVSQSRKRAFIWAASPEDVLPEWPEPMHVFSAPELKITLSENVQYAAVRSTA 1371

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            NGAP RA+TVRDTIG+LP VGNGAS+T MEYQ+DPVSWFQK+IRGNMAVLTDHISKEMNE
Sbjct: 1372 NGAPLRAITVRDTIGELPVVGNGASRTNMEYQSDPVSWFQKKIRGNMAVLTDHISKEMNE 1431

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            LNLIRCQKIPKRPG DW DLP+EK+KLS+GQ+VDLIPWCLPNTAKRHNQWKGLFGRLDW+
Sbjct: 1432 LNLIRCQKIPKRPGCDWRDLPEEKIKLSSGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWQ 1491

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
            GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD YQF+G+I HKHRQIGNAV
Sbjct: 1492 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDRYQFYGNIIHKHRQIGNAV 1551

Query: 1537 PPTLAFALGRKLKEAVESKRS 1557
            PP LAFALG KLKEAV+SK S
Sbjct: 1552 PPPLAFALGTKLKEAVDSKSS 1572


>gi|117307345|dbj|BAF36443.1| DNA methyltransferase type 1 [Nicotiana tabacum]
          Length = 1558

 Score = 2211 bits (5728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1089/1569 (69%), Positives = 1281/1569 (81%), Gaps = 22/1569 (1%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSE-VPETKDSTSGQKEKMKKLSQDSEEP- 58
            MGS A LD          D+    +KK K K + V + K   + +KEK + +S+  EEP 
Sbjct: 1    MGSLAGLDK--------PDTVAAGHKKEKSKRDSVSKRKAPATDKKEKKQPVSEAIEEPT 52

Query: 59   --RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTA-RQDGDRPNRRL 115
              RKRPKR AAC++FKEK+V +S+ S ++E KKDQ  ++E++A+ LTA  QD  RP RRL
Sbjct: 53   AARKRPKRAAACSNFKEKNVHLSKNSAVIETKKDQCVEEEVLAIRLTAGLQDSQRPCRRL 112

Query: 116  NDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGY 175
             DFI H+  G+PQP EM E+DDLFI+GLILPL++++D+EK KG+RCEGFGRIE W+ISGY
Sbjct: 113  TDFIFHNLEGIPQPFEMSEVDDLFITGLILPLEDNNDKEKAKGIRCEGFGRIEEWAISGY 172

Query: 176  EDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDE 235
            EDG+P+IW+ST+ ADYDC KP+  YKK+Y+ F  KA ACIEVYKKLSK+SGGN D S+DE
Sbjct: 173  EDGTPIIWISTETADYDCKKPSGGYKKFYDHFLAKATACIEVYKKLSKSSGGNPDLSLDE 232

Query: 236  LLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALK 295
            LLAGVVR+MSG KCF GGVSI+DF+ISQGEF++ QLIGLD+TSKK DQ F ELPVL +L+
Sbjct: 233  LLAGVVRAMSGLKCFSGGVSIRDFLISQGEFVYKQLIGLDDTSKKTDQLFVELPVLASLR 292

Query: 296  EESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEE 355
            +ESSK+E   Q    S G  L IG KVG G+GK DQ    T P  E+ED KLA+LL E+E
Sbjct: 293  DESSKQEMLSQPEPLSFGKTLTIGPKVGKGEGKRDQSDLITGPEQEEEDLKLAKLLHEQE 352

Query: 356  LWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCD 415
             W+S  QKK++ +TS  +KFYIKINEDEIA+DYP P +Y+   EE DE + +DS  D+  
Sbjct: 353  YWRSLNQKKSRSTTSTSSKFYIKINEDEIASDYPLPAYYKTPNEETDEYIVFDSGVDTYY 412

Query: 416  IDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSS 475
            ID LPR MLH+W+LYNSDSRLISLELLPMKPC DIDVTIFGSG M +D+GSG+ +DTD++
Sbjct: 413  IDDLPRSMLHNWALYNSDSRLISLELLPMKPCADIDVTIFGSGVMTADDGSGYNVDTDAN 472

Query: 476  QCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEP 535
              +SG SG+ +  G PIYLS+IKEWMIEFGSSMIFISIRTD+AWYRLGKPSKQYAPWYEP
Sbjct: 473  NSSSGGSGSVEIDGMPIYLSAIKEWMIEFGSSMIFISIRTDMAWYRLGKPSKQYAPWYEP 532

Query: 536  VLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQ 595
            VLKTA++A+SIIT+LKEQ+R +RLSF DVIKR+SE KK+  +YISS+   VERYVVVHGQ
Sbjct: 533  VLKTAKLAVSIITLLKEQSRCARLSFGDVIKRVSEFKKNHPAYISSNTDVVERYVVVHGQ 592

Query: 596  IVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKK-VQKSEINLNPRASMGPVV 654
            I+LQ F+E+PDE I+KCAF+IGL +KMEERHHTKWL+KKKK VQ+ E NLNPRASM P V
Sbjct: 593  IILQQFSEFPDESIRKCAFVIGLSRKMEERHHTKWLIKKKKIVQRHEQNLNPRASMAPSV 652

Query: 655  VSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEK 714
              KRK MQATTTRLINRIWGEYYSNYSPE  KE  ACE  +DEE +EQ EN+EDD +EE 
Sbjct: 653  --KRKAMQATTTRLINRIWGEYYSNYSPEASKEVVACEVKDDEEADEQEENDEDDAQEEN 710

Query: 715  L-ISEERQISCSVAVQIKSRSTKKEITWEGECV--RKSGLALYKKAIVHGEVVSLGSAVL 771
            L +SE+    CS    IKSRS  KEI W+GE +    SG  L+KKA +HG  ++ G +VL
Sbjct: 711  LEVSEKTHTPCSTRRHIKSRSDSKEINWDGESIGETASGELLFKKARIHGNEIAAGDSVL 770

Query: 772  VEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLE 831
            VE DE D+LP IYFVEYMFE   G K+ HG +MQRGS TVLGN ANEREVFL N+C DL+
Sbjct: 771  VEHDEPDELPSIYFVEYMFEKLDGSKMLHGRMMQRGSETVLGNAANEREVFLINECMDLQ 830

Query: 832  LQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGA 891
            L DIK++ VV IR +PWGHQHRK  A  DK+DRA+AE+RK+KGLP+E+YCKS Y P+RGA
Sbjct: 831  LGDIKESAVVSIRMMPWGHQHRKANAYVDKLDRAKAEDRKRKGLPSEFYCKSFYQPDRGA 890

Query: 892  FFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHF 950
            FF LP D MGLG G C++C  +  ++EKE+FK+  S +SFVY   EY + D+VYI P HF
Sbjct: 891  FFRLPFDKMGLGNGLCYSCELQRIDQEKESFKLDMSNSSFVYLGTEYSIDDFVYIHPDHF 950

Query: 951  TWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK 1010
              ++    TFKAGRNVGL  YVVCQLLEI  PK  K+A+V ST VKVRRFFRP+DIS++K
Sbjct: 951  AVERGGSGTFKAGRNVGLMAYVVCQLLEIFGPKGSKQAKVDSTNVKVRRFFRPEDISSDK 1010

Query: 1011 AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGS 1070
            AY SDIRE+YYSEE H + VE I GKCEVRKK DIP+ + PA F H+FFCE+L+DP  GS
Sbjct: 1011 AYSSDIREIYYSEEIHTVPVETIEGKCEVRKKYDIPSEDVPATFDHVFFCEYLYDPLNGS 1070

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
            LKQLPA +KLR+S   LD +AASR++KGK  EGEDEL V +   ASQ+N LATLDIFAGC
Sbjct: 1071 LKQLPAQVKLRFSRVKLD-DAASRKRKGKGKEGEDELRVGQLNVASQQNRLATLDIFAGC 1129

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            GGLSEGLQ+SG+S TKWAIEYEEPAG+AFKLNHPE+ + I NCNVILRAVM+KCGDAEDC
Sbjct: 1130 GGLSEGLQRSGVSDTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVILRAVMQKCGDAEDC 1189

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
            +STSEA+ELAA++DEN +N+LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA
Sbjct: 1190 ISTSEASELAAAMDENELNSLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1249

Query: 1251 FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSR 1310
            FLSFADY++P++FLLENVRNFVSFN+ QTFRLT+ASLLEMGYQVRFGILEAGAFGV QSR
Sbjct: 1250 FLSFADYYRPKFFLLENVRNFVSFNQKQTFRLTVASLLEMGYQVRFGILEAGAFGVPQSR 1309

Query: 1311 KRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTI 1370
            KRAFIWAASP + LPEWPEPMHVF  PELKI LS+   Y+AVRSTA+GAPFR++TVRDTI
Sbjct: 1310 KRAFIWAASPEEILPEWPEPMHVFGVPELKITLSETCHYAAVRSTASGAPFRSLTVRDTI 1369

Query: 1371 GDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPG 1430
            GDLPAVGNGASKT +EYQ DP+SWFQ++IRGN   L+DHI+KEMNELNLIRCQ+IPKRPG
Sbjct: 1370 GDLPAVGNGASKTCIEYQVDPISWFQRKIRGNSITLSDHITKEMNELNLIRCQRIPKRPG 1429

Query: 1431 ADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
            ADW DLPDEKVKL  GQ+VDLIPWCLPNTAKRHNQWKGLFGRLDW+GNFPTS TDPQPMG
Sbjct: 1430 ADWRDLPDEKVKLCNGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWDGNFPTSFTDPQPMG 1489

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            KVGMCFHPDQDRI+TVRECARSQGFPDSYQF G+I HKHRQIGNAVPP LA+ALGRKLKE
Sbjct: 1490 KVGMCFHPDQDRIVTVRECARSQGFPDSYQFAGNILHKHRQIGNAVPPPLAYALGRKLKE 1549

Query: 1551 AVES-KRST 1558
            AVES KRST
Sbjct: 1550 AVESKKRST 1558


>gi|169977306|emb|CAQ18900.1| DNA (cytosine-5) methyltransferase [Nicotiana sylvestris]
          Length = 1558

 Score = 2204 bits (5712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1085/1568 (69%), Positives = 1279/1568 (81%), Gaps = 20/1568 (1%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPR- 59
            MGS A LD  +      TD++  K  K +  S V + K   + +KEK + +S+  EEP  
Sbjct: 1    MGSLAGLDKPD------TDAAGHKKGKSRQDS-VSKRKAPATDKKEKKQPVSEAIEEPTA 53

Query: 60   --KRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLT-ARQDGDRPNRRLN 116
              KRPKR AAC++FKEK+V +S+ S ++E KK Q  ++E+VA+ LT   QD  RP RRL 
Sbjct: 54   ACKRPKRAAACSNFKEKTVHLSKNSSVIETKKYQCVEEEVVAIRLTVGLQDSQRPCRRLT 113

Query: 117  DFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYE 176
            DFI H+  G+PQP EM E+DDLFI+GLILPL+++ D+EK KG+RCEGFGRIE W+ISGYE
Sbjct: 114  DFIFHNSEGIPQPFEMSEVDDLFITGLILPLEDNIDKEKAKGIRCEGFGRIEEWAISGYE 173

Query: 177  DGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDEL 236
            DG+P+IW+ST+ ADYDC KP+  YKK+Y+ FF KA ACIEVYKKLSK+SGGN D S+DEL
Sbjct: 174  DGTPIIWISTETADYDCKKPSGGYKKFYDHFFAKATACIEVYKKLSKSSGGNPDLSLDEL 233

Query: 237  LAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKE 296
            LAGVVR+MSG KCF GGVSI+DF+ISQGEF++ QLIGLD+TSKK DQ F ELPVL +L++
Sbjct: 234  LAGVVRAMSGLKCFSGGVSIRDFLISQGEFVYKQLIGLDDTSKKTDQLFVELPVLASLRD 293

Query: 297  ESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEEL 356
            ESS +E   Q    S G  L IG KVG G+GK DQ   +T P  E+ED KLA+LL E+E 
Sbjct: 294  ESSNQEMLSQPEPLSFGKTLTIGPKVGKGEGKRDQSDLTTGPEQEEEDLKLAKLLHEQEY 353

Query: 357  WQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDI 416
            W S  QKK++ ++S  +KFYIKINEDEIA+DYP P +Y+   EE DE + +DS  D+  I
Sbjct: 354  WHSLNQKKSRSTSSSSSKFYIKINEDEIASDYPLPAYYKTCNEETDEYIVFDSGVDTYYI 413

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
            D LPR MLH+W+LYNSDSRLISLELLPMKPC DIDVTIFGSG M +D+GSG+ +D D++ 
Sbjct: 414  DDLPRSMLHNWALYNSDSRLISLELLPMKPCADIDVTIFGSGVMTADDGSGYNVDADANN 473

Query: 477  CTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPV 536
             +SG SG+ +  G PIYLS+IKEWMIEFGSSMIFISIRTD+AWYRLGKPSKQYAPWYEPV
Sbjct: 474  SSSGGSGSAEIDGMPIYLSAIKEWMIEFGSSMIFISIRTDMAWYRLGKPSKQYAPWYEPV 533

Query: 537  LKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQI 596
            LKTA++A+SIIT+LKEQ+R +RLSF DVIKR+SE KK   +YISS+   VERYVVVHGQI
Sbjct: 534  LKTAKLAVSIITLLKEQSRCARLSFGDVIKRVSEFKKHHPAYISSNTDVVERYVVVHGQI 593

Query: 597  VLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKV-QKSEINLNPRASMGPVVV 655
            +LQ F+E+PDE I+KCAF+IGL +KMEERHHTKWL+KKKKV Q+ E NLNPRASM P V 
Sbjct: 594  ILQQFSEFPDESIRKCAFVIGLSRKMEERHHTKWLIKKKKVVQRHEQNLNPRASMAPSV- 652

Query: 656  SKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKL 715
             KRK MQATTTRLINRIWGEYYSNYSPE  KE  ACE  +DEE +EQ EN+EDD +EE L
Sbjct: 653  -KRKAMQATTTRLINRIWGEYYSNYSPETSKEVVACEVKDDEEADEQEENDEDDAQEENL 711

Query: 716  -ISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLV 772
             +SE+    CS    IKSRS  KEI W+GE + K  SG  L+KKA +HG  +++G +VLV
Sbjct: 712  EVSEKTHTPCSTRRHIKSRSDSKEINWDGESIGKTASGELLFKKARIHGNEIAVGDSVLV 771

Query: 773  EVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLEL 832
            E DE D+LP IYFVEYMFE   G K+ HG +MQRGS TVLGN ANEREVFL N+C DL+L
Sbjct: 772  EHDEPDELPSIYFVEYMFEKLDGSKMLHGRMMQRGSETVLGNAANEREVFLINECMDLQL 831

Query: 833  QDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
             D+K++VVV IR +PWGHQHRK  A  DK+DRA+AE+RKKKGLP+E+YCKS Y P+RGAF
Sbjct: 832  GDVKESVVVSIRMMPWGHQHRKANAYVDKLDRAKAEDRKKKGLPSEFYCKSFYQPDRGAF 891

Query: 893  FILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFT 951
            F LP D MGLG G C++C  ++ ++EKE+FK+  S +SFVY   EY + D+VYI P HF 
Sbjct: 892  FRLPFDKMGLGNGLCYSCELQQIDQEKESFKLDMSNSSFVYLGTEYSIDDFVYIHPDHFA 951

Query: 952  WDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKA 1011
             ++    TFKAGRNVGL  YVVCQL+EI  PK  K+A+V ST VKVRRFFRP+DIS++KA
Sbjct: 952  VERGGSGTFKAGRNVGLMAYVVCQLIEISGPKGSKQAKVDSTNVKVRRFFRPEDISSDKA 1011

Query: 1012 YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSL 1071
            Y SDIRE+YYSEE H + VE I GKCEVRKK DIP+ + PAIF H+FFCE+ +DP  GSL
Sbjct: 1012 YSSDIREIYYSEEIHTVPVETIEGKCEVRKKYDIPSEDVPAIFDHVFFCEYFYDPLNGSL 1071

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            KQLPA +KLR+S   LD +AASR++KGK  EGEDEL V +   ASQ+N LATLDIFAGCG
Sbjct: 1072 KQLPAQVKLRFSRVKLD-DAASRKRKGKGKEGEDELRVGQLNEASQQNRLATLDIFAGCG 1130

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
            GLSEGLQ+SG+S TKWAIEYEEPAG+AFKLNHPE+ + I NCNV LR VM+KCGDAEDC+
Sbjct: 1131 GLSEGLQRSGVSDTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVFLRVVMQKCGDAEDCI 1190

Query: 1192 STSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1251
            ST EA+ELAA++DE+ +N+LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF
Sbjct: 1191 STPEASELAAAMDESELNSLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1250

Query: 1252 LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
            LSFADY++P++FLLENVRNFVSFN+ QTFRLT+ASLLEMGYQVRFGILEAGAFGV QSRK
Sbjct: 1251 LSFADYYRPKFFLLENVRNFVSFNQKQTFRLTVASLLEMGYQVRFGILEAGAFGVPQSRK 1310

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIG 1371
            RAFIWAASP + LPEWPEPMHVF  PELKI LS+   Y+AVRSTA+GAPFR++TVRDTIG
Sbjct: 1311 RAFIWAASPEEILPEWPEPMHVFGVPELKIALSETSHYAAVRSTASGAPFRSLTVRDTIG 1370

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            DLPAVGNGASKT +EYQ DPVSWFQ++IRGN   L+DHI+KEMNELNLIRCQ+IPKRPGA
Sbjct: 1371 DLPAVGNGASKTCIEYQVDPVSWFQRKIRGNSITLSDHITKEMNELNLIRCQRIPKRPGA 1430

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
            DW DLPDEKVKLS GQ+VDLIPWCLPNTAKRHNQWKGLFGRLDW+GNFPTSITDPQPMGK
Sbjct: 1431 DWRDLPDEKVKLSNGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWDGNFPTSITDPQPMGK 1490

Query: 1492 VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            VGMCFHPDQDRI+TVRECARSQGFPDSYQF G+I HKHRQIGNAVPP LA+ALGRKLKEA
Sbjct: 1491 VGMCFHPDQDRIVTVRECARSQGFPDSYQFAGNILHKHRQIGNAVPPPLAYALGRKLKEA 1550

Query: 1552 VES-KRST 1558
            VES KRST
Sbjct: 1551 VESNKRST 1558


>gi|7288140|dbj|BAA92852.1| DNA (cytosine-5-)-methyltransferase [Nicotiana tabacum]
 gi|56130955|gb|AAV80209.1| cytosine-5-methyltransferase [Nicotiana tabacum]
          Length = 1556

 Score = 2202 bits (5707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1073/1543 (69%), Positives = 1269/1543 (82%), Gaps = 13/1543 (0%)

Query: 26   KKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEP---RKRPKRMAACTDFKEKSVRISEKS 82
            K++  +  V + K   + +KEK + +S+  EEP   RKRPKR AAC++FKEK+V +S+ S
Sbjct: 17   KEKSKRDSVSKRKAPATDKKEKKQPVSEAIEEPTAARKRPKRAAACSNFKEKNVHLSKNS 76

Query: 83   YLVEAKKDQYADDEIVAVGLTA-RQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFIS 141
             ++E KKDQ  ++E++A+ LTA  QD  RP RRL DFI H+  G+PQP EM E+DDLFI+
Sbjct: 77   AVIETKKDQCVEEEVLAIRLTAGLQDSQRPCRRLTDFIFHNLEGIPQPFEMSEVDDLFIT 136

Query: 142  GLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYK 201
            GLILPL++++D+EK KG+RCEGFGRIE W+ISGYEDG+P+IW+ST+ ADYDC KP+  YK
Sbjct: 137  GLILPLEDNNDKEKAKGIRCEGFGRIEEWAISGYEDGTPIIWISTETADYDCKKPSGGYK 196

Query: 202  KYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVI 261
            K+Y+ FF KA ACIEVYKKLSK+SGGN D S+D LLAGVVR+MSG KCF GGVSI+DF+I
Sbjct: 197  KFYDHFFAKATACIEVYKKLSKSSGGNPDLSLDGLLAGVVRAMSGLKCFSGGVSIRDFLI 256

Query: 262  SQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSK 321
            SQGEF++ QLIG D+TSKK DQ F ELPVL +L++ESS +E   Q    S G  L IG K
Sbjct: 257  SQGEFVYKQLIGQDDTSKKTDQLFVELPVLASLRDESSNQEMLSQPEPLSFGRTLTIGPK 316

Query: 322  VGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINE 381
            VG G+GK DQ   +T P  E+ED KLA+LL E+E W S  QK ++ ++S  +KFYIKINE
Sbjct: 317  VGKGEGKRDQSDLTTGPEQEEEDLKLAKLLHEQEYWHSLNQKTSRSTSSSSSKFYIKINE 376

Query: 382  DEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLEL 441
            DEIA+DYP P +Y+   EE DE + +DS  D+  ID LPR MLH+W+LYNSDSRLIS EL
Sbjct: 377  DEIASDYPLPAYYKTCNEETDEYIVFDSGVDTYYIDDLPRSMLHNWALYNSDSRLISSEL 436

Query: 442  LPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWM 501
            LPMKPC DIDVTIFGSG M +D+GSG+ +D D++  +SG SG+ +  G PIYLS+IKEWM
Sbjct: 437  LPMKPCADIDVTIFGSGVMTADDGSGYNVDADANNSSSGGSGSAEIDGMPIYLSAIKEWM 496

Query: 502  IEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSF 561
            IEFGSSMIFISIRTD+AWYRLGKPSKQYAPWYEPVLKTA++A+SIIT+LKEQ+R +RLSF
Sbjct: 497  IEFGSSMIFISIRTDMAWYRLGKPSKQYAPWYEPVLKTAKLAVSIITLLKEQSRCARLSF 556

Query: 562  TDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKK 621
             DVIKR+SE KK   +YISS+   VERYVVVHGQI+LQ F+E+PDE I+KCAF+IGL +K
Sbjct: 557  GDVIKRVSEFKKHHPAYISSNTDVVERYVVVHGQIILQQFSEFPDESIRKCAFVIGLSRK 616

Query: 622  MEERHHTKWLVKKKK-VQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNY 680
            MEERHHTKWL+KKKK VQ+ E NLNPRASM P V  KRK MQATTTRLINRIWGEYYSNY
Sbjct: 617  MEERHHTKWLIKKKKVVQRHEQNLNPRASMAPSV--KRKAMQATTTRLINRIWGEYYSNY 674

Query: 681  SPEDGKEETACEANEDEEVEEQGENEEDDTEEEKL-ISEERQISCSVAVQIKSRSTKKEI 739
            SPE  KE  ACE  +DEEV+EQ EN+EDD +EE L +SE+    CS    IKSRS  KEI
Sbjct: 675  SPETSKEVVACEVKDDEEVDEQEENDEDDAQEENLEVSEKTHTPCSTRRHIKSRSDSKEI 734

Query: 740  TWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
             W+GE + K  SG  L+KK  +HG  +++G +VLVE DE D+LP IYFVEYMFE   G K
Sbjct: 735  NWDGESIGKTASGELLFKKPRIHGNEIAVGDSVLVEHDEPDELPSIYFVEYMFEKLDGSK 794

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            + HG +MQRGS TVLGN ANEREVFL N+C DL+L D+K++VVV IR +PWGHQHRK  A
Sbjct: 795  MLHGRMMQRGSETVLGNAANEREVFLINECMDLQLGDVKESVVVSIRMMPWGHQHRKANA 854

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEK 917
              DK+DRA+AE+RKKKGLP+E+YCKS Y P+RGAFF LP D MGLG G C++C  ++ ++
Sbjct: 855  YVDKLDRAKAEDRKKKGLPSEFYCKSFYQPDRGAFFRLPFDKMGLGNGLCYSCELQQIDQ 914

Query: 918  EKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQL 976
            EKE+FK+  S +SFVY   EY + D+VYI P HF  ++    TFKAGRNVGL  YVVCQL
Sbjct: 915  EKESFKLDMSNSSFVYLGTEYSIDDFVYIHPDHFAVERGGSGTFKAGRNVGLMAYVVCQL 974

Query: 977  LEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGK 1036
            +EI  PK  K+A+V ST VKVRRFFRP+DIS++KAY SDIRE+YYSEE H + VE I GK
Sbjct: 975  IEISGPKGSKQAKVDSTNVKVRRFFRPEDISSDKAYSSDIREIYYSEEIHTVPVETIEGK 1034

Query: 1037 CEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRK 1096
            CEVRKK DIP+ + PA F H+FFCE+L+DP  GSLKQLPA +KLR+S   LD +AASR++
Sbjct: 1035 CEVRKKYDIPSEDVPATFDHVFFCEYLYDPLNGSLKQLPAQVKLRFSRVKLD-DAASRKR 1093

Query: 1097 KGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAG 1156
            KGK  EGEDEL V +   ASQ+N LATLDIFAGCGGLSEGLQ+SG+S TKWAIEYEEPAG
Sbjct: 1094 KGKGKEGEDELRVGQLNVASQQNRLATLDIFAGCGGLSEGLQRSGVSDTKWAIEYEEPAG 1153

Query: 1157 EAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ 1216
            +AFKLNHPE+ + I NCNVILRAVM+KCGDAE+C+STSEA+ELAA++DEN +N+LPLPGQ
Sbjct: 1154 DAFKLNHPEAKVFIQNCNVILRAVMQKCGDAENCISTSEASELAAAMDENELNSLPLPGQ 1213

Query: 1217 VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276
            VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY++P++FLLENVRNFVSFN+
Sbjct: 1214 VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYYRPKFFLLENVRNFVSFNQ 1273

Query: 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
             QTFRLT+ASLLEMGYQVRFGILEAGAFGV QSRKRAFIWAASP + LPEWPEPMHVF  
Sbjct: 1274 KQTFRLTVASLLEMGYQVRFGILEAGAFGVPQSRKRAFIWAASPEEILPEWPEPMHVFGV 1333

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
            PELKI LS+   Y+AVRSTA+GAPFR++TVRDTIGDLPAVGNGASKT +EYQ DP+SWFQ
Sbjct: 1334 PELKITLSETCHYAAVRSTASGAPFRSLTVRDTIGDLPAVGNGASKTCIEYQVDPISWFQ 1393

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
            ++IRGN   L+DHI+KEMNELNLIRCQ+IPKRPGADW DLPDEKVKL  GQ+VDLIPWCL
Sbjct: 1394 RKIRGNSITLSDHITKEMNELNLIRCQRIPKRPGADWRDLPDEKVKLCNGQLVDLIPWCL 1453

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
            PNTAKRHNQWKGLFGRLDW+GNFPTS TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFP
Sbjct: 1454 PNTAKRHNQWKGLFGRLDWDGNFPTSFTDPQPMGKVGMCFHPDQDRIVTVRECARSQGFP 1513

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES-KRST 1558
            DSYQF G+I HKHRQIGNAVPP LA+ALGRKLKEAVES KRST
Sbjct: 1514 DSYQFAGNILHKHRQIGNAVPPPLAYALGRKLKEAVESKKRST 1556


>gi|411012963|gb|AFV99138.1| MET-type cytosine DNA-methyltransferase 1 [Malus x domestica]
          Length = 1570

 Score = 2197 bits (5692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1112/1565 (71%), Positives = 1280/1565 (81%), Gaps = 29/1565 (1%)

Query: 6    LLDSKESNDQK--ATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEP---RK 60
            +L++K +N  K  ++ SS    KK KP S+    K + +G K K + L Q +EEP   RK
Sbjct: 15   VLETKGANGVKPPSSASSGXTKKKXKPASQ----KAAPAGSKTKKRDLPQXTEEPSRSRK 70

Query: 61   RPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGD--RPNRRLNDF 118
             PKR AAC DFKEKSV ISEKS L+E KKD+  D E  A+ LT  +D D  RPNRRL DF
Sbjct: 71   MPKRAAACADFKEKSVHISEKSNLIETKKDRVVDQETDAILLTCGEDQDAARPNRRLTDF 130

Query: 119  ILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG 178
            I+HDE+G PQP+EMLE+ D+FISG ILPL ESSD++K++GVRCEGFGRIESW ISGYE+G
Sbjct: 131  IVHDESGSPQPVEMLEVADMFISGTILPLNESSDKDKQRGVRCEGFGRIESWDISGYEEG 190

Query: 179  SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLA 238
            SPVIWLSTD+ADYDC KPAS+Y+KY++ FFEKARACIEVYKKLSK+    SD ++DELLA
Sbjct: 191  SPVIWLSTDVADYDCRKPASTYRKYHDQFFEKARACIEVYKKLSKS---KSDPTLDELLA 247

Query: 239  GVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEES 298
            G+ RSMSGSK F G  +IK+FV+SQGEFI++QLIGL+E SKKNDQ FAELPVLVAL++ES
Sbjct: 248  GIARSMSGSKFFSGTAAIKEFVVSQGEFIYDQLIGLEEASKKNDQPFAELPVLVALRDES 307

Query: 299  SKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQ 358
                 FVQ   AS  G L IGS+  DG+  ++  GSS   A+E++D KLARLLQEEE W+
Sbjct: 308  RNCGGFVQSKPASSSGTLKIGSEDRDGETVLNASGSSIVEAEENDDVKLARLLQEEEYWK 367

Query: 359  SKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQ 418
            S KQKK QGS S  +K+YIKINEDEIANDYP P +Y+ S EE DE + +D+DYD  + D 
Sbjct: 368  SMKQKKRQGSASLSSKYYIKINEDEIANDYPLPAYYKTSIEETDEFIVFDNDYDILNADD 427

Query: 419  LPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCT 478
            LPR MLH+WSLYNSDSRLISLELLPMKPC +IDVTIFGSG M +D+GSGF   +  S  +
Sbjct: 428  LPRSMLHNWSLYNSDSRLISLELLPMKPCTEIDVTIFGSGVMTADDGSGF---SLDSDGS 484

Query: 479  SGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLK 538
            S   GAQDA G PIYLS+IKEWMIE G+SM+ ISIRTDLAWYRLG+PSKQYA WYEP+LK
Sbjct: 485  SSGPGAQDADGMPIYLSAIKEWMIELGASMVSISIRTDLAWYRLGQPSKQYALWYEPILK 544

Query: 539  TARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVL 598
            TA+V  SIIT+LKEQ+RV+RLSF DVIKRLS   KD  +YISSDPA VERYVVVHGQI+L
Sbjct: 545  TAKVGRSIITLLKEQSRVARLSFADVIKRLSGFPKDHCAYISSDPAFVERYVVVHGQIIL 604

Query: 599  QLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQK-SEINLNPRASMGPVVVSK 657
            QLF+E+PD QI KC F++GL  KMEERHHTKWLVKKKK+ + S  NLNPRASMGPVV SK
Sbjct: 605  QLFSEFPDAQIXKCPFVVGLSNKMEERHHTKWLVKKKKLVEKSGSNLNPRASMGPVV-SK 663

Query: 658  RKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLI- 716
            +K M+ATTT+LINRIWGEYY N SPED  EE      ++EE  E+ E +ED  E+E    
Sbjct: 664  KKAMRATTTKLINRIWGEYYLNNSPEDSNEEETNGGKKEEEEVEEEEGKEDVEEDEDDEK 723

Query: 717  ---SEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVL 771
               +E+ Q   S++ Q KS S  KE+ W+GE V    SG ALYK A +HG+ +S+G AVL
Sbjct: 724  DNPTEQAQKRSSISRQTKSCSNNKEVLWDGESVGTTCSGEALYKCASLHGDEISVGGAVL 783

Query: 772  VEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLE 831
            VE+D  D+LP IYFVEYM+E   G K+FHG +M+RGS TVLGNTANEREVFL N+C +L 
Sbjct: 784  VELDGSDELPAIYFVEYMYETRNGSKMFHGRLMERGSQTVLGNTANEREVFLTNECTNLA 843

Query: 832  LQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGA 891
            L+D+K+T VVDI+ +PWGHQ+RK+ A A + DR RAE+RKKKGLPTEYYCKSLY PE GA
Sbjct: 844  LKDVKETAVVDIKLMPWGHQYRKENAEASRRDRERAEDRKKKGLPTEYYCKSLYCPEEGA 903

Query: 892  FFILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHF 950
            FF L  D+MGLG G+CH+C   E+E+ KE FKV+S KT FVY  AEY VHDYVY+SPH F
Sbjct: 904  FFSLSXDTMGLGSGACHSCKVNEAEEAKEVFKVNSSKTGFVYRGAEYSVHDYVYVSPHLF 963

Query: 951  TWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK 1010
            + ++ E ETFKAGRN+GLK YVVCQ+LEII  KE KR    STQVKVRRFFRP+DIS EK
Sbjct: 964  STERMETETFKAGRNLGLKAYVVCQVLEIIGTKESKRPGPVSTQVKVRRFFRPEDISVEK 1023

Query: 1011 AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGS 1070
            AY  DIREVYYSEETH++ V+ I GKCEVRKK+D+P CNAP  F+H FFCE+L+DPS GS
Sbjct: 1024 AYGCDIREVYYSEETHIVTVDDIEGKCEVRKKSDLPVCNAPVTFEHTFFCEYLYDPSNGS 1083

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
            +KQLPA IKLRYS+   D E  SR++KGK  EG D  EVEKQ   S +  LATLDIFAGC
Sbjct: 1084 IKQLPATIKLRYSTVGGDVE--SRKRKGKGKEG-DVSEVEKQRADSVQKRLATLDIFAGC 1140

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            GGLSEGL+Q+GIS TKWAIEYEEPAG+AFKLNHPESL+ INNCNVILRAVMEKCGD +DC
Sbjct: 1141 GGLSEGLRQAGISLTKWAIEYEEPAGDAFKLNHPESLVFINNCNVILRAVMEKCGDTDDC 1200

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
            +STSEAA+LA SLDE V N+LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA
Sbjct: 1201 ISTSEAADLAKSLDEKVKNDLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1260

Query: 1251 FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSR 1310
            FLSFADYF+P+YFLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILEAGA+GVSQSR
Sbjct: 1261 FLSFADYFRPKYFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGAYGVSQSR 1320

Query: 1311 KRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTI 1370
            KRAFIWAA+P + LPEWPEPMHVF  PELKI LS N  YSAVRSTA GAPFR++TVRDTI
Sbjct: 1321 KRAFIWAAAPDENLPEWPEPMHVFGVPELKISLSGNSYYSAVRSTAGGAPFRSITVRDTI 1380

Query: 1371 GDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPG 1430
            GDLPAVGNGASK  +EY++DP+SWFQK+IRG MAVLT+HISKEMNELNLIRCQ+IPKRPG
Sbjct: 1381 GDLPAVGNGASKVNLEYESDPISWFQKKIRGEMAVLTEHISKEMNELNLIRCQRIPKRPG 1440

Query: 1431 ADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
            ADW  LPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG
Sbjct: 1441 ADWQCLPDEKVKLSTGQIVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1500

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            KVGMCFHPDQDRILTVRECARSQGF DSYQF G+I HKHRQIGNAVPPTLA+ALGRKLKE
Sbjct: 1501 KVGMCFHPDQDRILTVRECARSQGFRDSYQFSGNILHKHRQIGNAVPPTLAYALGRKLKE 1560

Query: 1551 AVESK 1555
            AV SK
Sbjct: 1561 AVNSK 1565


>gi|2895089|gb|AAC39356.1| Met2-type cytosine DNA-methyltransferase [Daucus carota]
          Length = 1761

 Score = 2172 bits (5629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1064/1560 (68%), Positives = 1262/1560 (80%), Gaps = 35/1560 (2%)

Query: 15   QKATDSSEMKNKKRKPKSEVPETK---------DSTSGQKEKMKKLSQDSEEPRKRPKRM 65
            ++A D ++ K K  K   +V   K         +  + Q+  + K S+ S   RK PKR 
Sbjct: 219  KRAADCADDKEKAVKISKKVSSAKAKMDQALDEEEVAVQEAHVSKSSEVSAGSRKMPKRA 278

Query: 66   AACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENG 125
            AAC DFKEK V+IS+K+ ++E KKD+  D+E +AV LTA Q+  RP RRL DFILH+ +G
Sbjct: 279  AACADFKEKVVQISKKASIIETKKDRCVDEEEMAVRLTAGQEDGRPCRRLTDFILHNSDG 338

Query: 126  LPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLS 185
            + QP EMLE+DDLFISGLILPL+ESS +E +  +RCEGFGRIE W+ISGYEDG P+IW+S
Sbjct: 339  VQQPFEMLEVDDLFISGLILPLEESSQKE-DCSIRCEGFGRIEDWAISGYEDGVPIIWVS 397

Query: 186  TDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMS 245
            TD+ADYDC+KP+++YKK+YE FF KA ACIEVYKKLSK+SGGN D S DELLAGVVR+M+
Sbjct: 398  TDVADYDCVKPSAAYKKHYEHFFAKATACIEVYKKLSKSSGGNPDLSFDELLAGVVRAMN 457

Query: 246  GSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFV 305
            G KCF  GVSIKDF+ISQGEFI+NQL+GLDETS K+DQ+F ELPVLVAL++ESS+  N  
Sbjct: 458  GMKCFSRGVSIKDFIISQGEFIYNQLVGLDETS-KDDQQFLELPVLVALRDESSRHVNDF 516

Query: 306  QVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKT 365
            Q       G L    K+ D +   DQ  S T   +E ED K+ARLLQEEE W+S KQKK 
Sbjct: 517  QERIGCTNGTL----KIRDNE---DQKNSVT---EEGEDKKMARLLQEEEFWKSMKQKKG 566

Query: 366  QGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLH 425
            QGS     K+YIKINEDEIANDYP P +Y+ + +E DE + +D   D+C  D LPR MLH
Sbjct: 567  QGSRVASTKYYIKINEDEIANDYPLPAYYKTANQETDEYIIFDGGLDACYTDDLPRSMLH 626

Query: 426  DWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQ 485
            +W+LYNSDSRLISLELLPMKPC +IDVTIFGSG M  D+GSGF L+TD+S  +S  SG  
Sbjct: 627  NWALYNSDSRLISLELLPMKPCAEIDVTIFGSGVMTEDDGSGFNLETDTSHSSSSGSGTA 686

Query: 486  DAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAIS 545
            +  G PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQYAPWYEPVLKTARVAIS
Sbjct: 687  NVDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPWYEPVLKTARVAIS 746

Query: 546  IITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYP 605
            IIT+L EQ RVSRLSF DVIKR+SE +K   +YISS PA VERY+VVHGQI+LQ F E+P
Sbjct: 747  IITLLMEQARVSRLSFMDVIKRVSEFEKGHPAYISSIPAVVERYIVVHGQIILQQFLEFP 806

Query: 606  DEQIKKCAFIIGLMKKMEERHHTKWLVKKKKV-QKSEINLNPRASMGPVVVSKRKVMQAT 664
            DE+IKK AF+ GL KKMEERHHTKWLVKKKK+ Q+ E NLNPRA++ P VVSKRK MQAT
Sbjct: 807  DEKIKKSAFVAGLTKKMEERHHTKWLVKKKKILQRDEPNLNPRAAIAP-VVSKRKAMQAT 865

Query: 665  TTRLINRIWGEYYSNYSPEDGKE--ETACEANEDEEVEEQGENEEDDTEEEKLISEERQI 722
            TTRLINRIWGE+YSNYSPED KE   +  + +E+ E +E+ ++EE+D E+E L++ E+  
Sbjct: 866  TTRLINRIWGEFYSNYSPEDMKEGITSDEKEDEEAEEQEEIDDEEEDEEKETLVALEKTP 925

Query: 723  S-CSVAVQIKSRSTKKEITWEGECV--RKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQ 779
            +  S   + KS S  K+++W G+    R SG  LYK+A +HG ++++G AVL +      
Sbjct: 926  TPTSTPRKSKSNSKLKDVSWNGKPAVKRSSGEMLYKQATLHGNMIAVGGAVLTDDASCLN 985

Query: 780  LPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTV 839
            LP IY+VEYMFE++ G K+ HG ++++GS TVLGNTANE+E+FL N+C + EL D+K  V
Sbjct: 986  LPAIYYVEYMFESSDG-KMIHGRLLRQGSETVLGNTANEQELFLTNECMEFELMDVKMPV 1044

Query: 840  VVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDS 899
            +V+IRS PWGHQHRK  ANADK+D+ARA ERK KGL TEYYCKSLYWPERGAFF LPV+ 
Sbjct: 1045 IVEIRSRPWGHQHRKINANADKIDKARAVERKNKGLETEYYCKSLYWPERGAFFSLPVNC 1104

Query: 900  MGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            MGLG G C +C   +   EKE F V S KTSFVY   EY VHD++Y+SP  F  ++   E
Sbjct: 1105 MGLGSGICSSCSANKDHTEKEKFSVSSCKTSFVYKGTEYSVHDFLYVSPDQFATERVGQE 1164

Query: 959  TFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIRE 1018
            TFK GRNVGLK + +CQLLE++VPK+P++A+  ST+VKVRRF+RP+DIS EKAYCSDIRE
Sbjct: 1165 TFKGGRNVGLKAFAICQLLEVVVPKKPQQADDSSTEVKVRRFYRPEDISDEKAYCSDIRE 1224

Query: 1019 VYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI 1078
            VYYSEETH + VEAI G+CEVRKK+D+P C+AP I++H+F+CE+L+DP KGSLKQLP++I
Sbjct: 1225 VYYSEETHTLLVEAIEGRCEVRKKSDLPTCDAPTIYEHVFYCEYLYDPHKGSLKQLPSNI 1284

Query: 1079 KLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQ 1138
            KLRYS+     +++ R+ KGKC EGED+LE EK    S+EN LATLDIFAGCGGLSEGLQ
Sbjct: 1285 KLRYSTVKGAYDSSLRKNKGKCKEGEDDLEAEK----SKENCLATLDIFAGCGGLSEGLQ 1340

Query: 1139 QSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198
            QSG+  TKWAIEYEEPAG+AFKLNHP++ M INNCNVIL+A+M+K GDA+DC+ST EAA+
Sbjct: 1341 QSGVCRTKWAIEYEEPAGDAFKLNHPDTTMFINNCNVILKAIMDKSGDADDCISTPEAAD 1400

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
            LAA L E  + NLPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMILAFLSFADY+
Sbjct: 1401 LAAKLSEEELKNLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYY 1460

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
            +P+YFLLENVRNFVSFNKGQTFRL +ASLLEMGYQVRFGILEAGAFGV QSRKRAFIWAA
Sbjct: 1461 RPKYFLLENVRNFVSFNKGQTFRLAIASLLEMGYQVRFGILEAGAFGVPQSRKRAFIWAA 1520

Query: 1319 SPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVG 1377
            SP +TLP  WPEPMHVFAAPELK+ L  N  Y+AVRST  GAPFRA+TVRDTIGDLP V 
Sbjct: 1521 SPEETLPGSWPEPMHVFAAPELKVALPGNKHYAAVRSTQAGAPFRAITVRDTIGDLPMVT 1580

Query: 1378 NGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            NGASKT +EY+ DP+SWFQK IR NM VLTDHISKEMNELNLIRCQ+IPKR GADWHDLP
Sbjct: 1581 NGASKTTLEYRCDPISWFQKNIRANMMVLTDHISKEMNELNLIRCQRIPKRRGADWHDLP 1640

Query: 1438 DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1497
            +EKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH
Sbjct: 1641 EEKVKLSTGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1700

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            PDQDRI+TVRECARSQGFPDSYQF+G+I HKHRQIGNAVPP LA+ALGRKLKEA+ESK S
Sbjct: 1701 PDQDRIVTVRECARSQGFPDSYQFYGNILHKHRQIGNAVPPPLAYALGRKLKEALESKGS 1760



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 32/49 (65%)

Query: 52  SQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAV 100
           S+ S   RK PKR A C D KEK+V+IS+K    +AK DQ  D+E VAV
Sbjct: 208 SEVSAGSRKMPKRAADCADDKEKAVKISKKVSSAKAKMDQALDEEEVAV 256



 Score = 40.8 bits (94), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 44  QKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAV 100
           QK ++ K S  S   R  PK+ A C + K K+V+IS KS   +AKKDQ  D+E VAV
Sbjct: 145 QKAQVSKSSDVSAGSRNMPKQAAGCANDKVKAVKISRKS--TKAKKDQGLDEEEVAV 199


>gi|350536241|ref|NP_001234748.1| DNA (cytosine-5)-methyltransferase [Solanum lycopersicum]
 gi|2887280|emb|CAA05207.1| DNA (cytosine-5)-methyltransferase [Solanum lycopersicum]
          Length = 1559

 Score = 2160 bits (5597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1059/1547 (68%), Positives = 1253/1547 (80%), Gaps = 17/1547 (1%)

Query: 18   TDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEP---RKRPKRMAACTDFKEK 74
             D S  K  KRK  S V + K S +G+KEK + +S+  EEP   RKRPKR AAC+DFKEK
Sbjct: 17   NDKSGHKKNKRKQDS-VSKRKASATGKKEKKQAVSETIEEPTAGRKRPKRAAACSDFKEK 75

Query: 75   SVRISEKSYLVEAKKDQYADDEIVAVGLTA-RQDGDRPNRRLNDFILHDENGLPQPLEML 133
            SV +S+KS ++E KKD   D+E VA+ LTA  Q+  RP RRL DF+ H+  G+PQP  M 
Sbjct: 76   SVHLSKKSSVIETKKDHCVDEEDVAIRLTAGLQESQRPCRRLTDFVFHNSEGIPQPFGMS 135

Query: 134  EIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDC 193
            E+DDLFISGLILPL++S D+ K KG+RCEGFGRIE W+ISGYEDG+PVIW+ST+ ADYDC
Sbjct: 136  EVDDLFISGLILPLEDSLDKVKAKGIRCEGFGRIEEWAISGYEDGTPVIWISTETADYDC 195

Query: 194  LKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGG 253
            LKP+ SYKK+Y+ F  KA AC+EVYKKLSK+SGGN D S+DELLAGVVR+M+G KCF GG
Sbjct: 196  LKPSGSYKKFYDHFLAKATACVEVYKKLSKSSGGNPDLSLDELLAGVVRAMTGIKCFSGG 255

Query: 254  VSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLG 313
            VSI+DFVI+QG FI+ +LIGLD+TSKK DQ F ELPVL +L++ESSK E   Q    S G
Sbjct: 256  VSIRDFVITQGGFIYKELIGLDDTSKKTDQLFVELPVLASLRDESSKHETLAQPETISSG 315

Query: 314  GNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMN 373
              L IG K G+G  K+ + G +  PA EDED KLA+LL EEE W S KQKK + ++S  +
Sbjct: 316  NGLRIGPKAGNGGDKIVESGLANGPAPEDEDLKLAKLLHEEEYWCSLKQKKDRNTSSSSS 375

Query: 374  KFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSD 433
            K YIKINEDEIA+DYP P +Y+ S EE DE + +DS  ++  ID+LPR MLH+W+LYNSD
Sbjct: 376  KIYIKINEDEIASDYPLPAYYKTSNEETDEYIVFDSGVETYHIDELPRSMLHNWALYNSD 435

Query: 434  SRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIY 493
            SRLISLELLPMK C DIDVTIFGSG M +D+GSG+  DTD++  +SG S + +  G PIY
Sbjct: 436  SRLISLELLPMKACADIDVTIFGSGVMTADDGSGYNFDTDANHSSSGGSRSAEIDGMPIY 495

Query: 494  LSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQ 553
            LS+IKEWMIEFGSSMIFISIRTD+AWYRLGKP KQYAPWYEPV+KTAR+A+SIIT+LKEQ
Sbjct: 496  LSAIKEWMIEFGSSMIFISIRTDMAWYRLGKPLKQYAPWYEPVIKTARLAVSIITLLKEQ 555

Query: 554  TRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCA 613
             RV+RLSF +VIKR+SE KKD  +YISS+  AVERYVVVHGQI+LQ F+E+PD  I+ CA
Sbjct: 556  NRVARLSFGEVIKRVSEFKKDHPAYISSNVDAVERYVVVHGQIILQQFSEFPDVSIRNCA 615

Query: 614  FIIGLMKKMEERHHTKWLVKKKKV-QKSEINLNPRASMGPVVVSKRKVMQATTTRLINRI 672
            F +GL +KMEERHHTKW++KKKKV Q+ E NLNPRASM P V  KRK MQATTTRLINRI
Sbjct: 616  FAVGLSRKMEERHHTKWVIKKKKVMQRLEQNLNPRASMAPSV--KRKAMQATTTRLINRI 673

Query: 673  WGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKL-ISEERQISCSVAVQIK 731
            WGEYYSNYSPE  KE   CE  +DEE +EQ ENEEDD  E  L + E+     S    IK
Sbjct: 674  WGEYYSNYSPEVSKEVADCEVKDDEEPDEQEENEEDDVPERNLDVPEKAHTPSSTRRHIK 733

Query: 732  SRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            SRS  KEI W+GE + K  SG  L+KKA VHG  +++G +VLVE DE D+L  IYFVEYM
Sbjct: 734  SRSDSKEINWDGESIGKTASGEQLFKKARVHGHEIAVGDSVLVEHDEPDELGCIYFVEYM 793

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWG 849
            FE   G K+ HG +MQRGS TVLGN ANEREVFL N+C +L+L D+K+++ V+IR +PWG
Sbjct: 794  FEKLDGSKMLHGKMMQRGSDTVLGNAANEREVFLINECMNLQLGDVKESIAVNIRMMPWG 853

Query: 850  HQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHA 909
            HQHR    NADK++ A+AE+RK+KGLPTE+YCKS Y PE+GAFF LP D MGLG G C++
Sbjct: 854  HQHRN--TNADKLETAKAEDRKRKGLPTEFYCKSFYRPEKGAFFRLPFDKMGLGNGLCYS 911

Query: 910  CGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGL 968
            C  +++++EKE+FK   SK+SFVY   EY V D+VY+SP HFT ++    TFKAGRNVGL
Sbjct: 912  CELQQTDQEKESFKFDMSKSSFVYLGTEYSVDDFVYVSPDHFTAERGGNGTFKAGRNVGL 971

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLI 1028
              YVVCQLLEI+ PK  K+A+V ST VKVRRFFRP+DIS++KAY SDIRE+YYSE+ H +
Sbjct: 972  MAYVVCQLLEIVGPKGSKQAKVDSTNVKVRRFFRPEDISSDKAYSSDIREIYYSEDIHTV 1031

Query: 1029 FVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLD 1088
             VE I GKCEVRKK DI + + PA+F HIFFCE+L+DP  GSLK+LPA I L  S   LD
Sbjct: 1032 PVEIIKGKCEVRKKYDISSEDVPAMFDHIFFCEYLYDPLNGSLKKLPAQINLILSKIKLD 1091

Query: 1089 SEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWA 1148
             +A SR++KGK  EG DE  V +    S +N L+TLDIFAGCGGLSEGLQ SG++ T WA
Sbjct: 1092 -DATSRKRKGKGKEGVDE--VGELNETSPQNRLSTLDIFAGCGGLSEGLQHSGVTDTNWA 1148

Query: 1149 IEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVI 1208
            IEYE PAG+AF+LNHP++ + I+NCNVILRAVM+KCGD++DC+ST EA+ELAA++DE+ +
Sbjct: 1149 IEYEAPAGDAFRLNHPKTKVFIHNCNVILRAVMQKCGDSDDCISTPEASELAAAMDESEL 1208

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            N+LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY++P++FLLENV
Sbjct: 1209 NSLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYYRPKFFLLENV 1268

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
            RNFVSFN+ QTFRLT+ASLLEMGYQVRFGILEAGA+GV QSRKRAFIWA SP + LPEWP
Sbjct: 1269 RNFVSFNQKQTFRLTVASLLEMGYQVRFGILEAGAYGVPQSRKRAFIWAGSPEEVLPEWP 1328

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
            EPMHVFA PELKI LS+   Y+AVRSTA+GAPFR++TVRDTIGDLP VGNGASKT +EYQ
Sbjct: 1329 EPMHVFAVPELKIALSETSYYAAVRSTASGAPFRSLTVRDTIGDLPVVGNGASKTCIEYQ 1388

Query: 1389 NDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQV 1448
             DPVSWFQK+IRG+   L+DHISKEMNELNLIRCQ+IPKRPGADW DL DEKVKLS GQ+
Sbjct: 1389 GDPVSWFQKKIRGSSITLSDHISKEMNELNLIRCQRIPKRPGADWRDLEDEKVKLSNGQL 1448

Query: 1449 VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRE 1508
            VDLIPWCLPNTAKRHNQWKGLFGRLDW+GNFPTSITDPQPMGKVGMCFHPDQDRI+TVRE
Sbjct: 1449 VDLIPWCLPNTAKRHNQWKGLFGRLDWDGNFPTSITDPQPMGKVGMCFHPDQDRIVTVRE 1508

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            CARSQGFPDSYQF G+I HKHRQIGNAVPP LA+ALGRKLKEAVESK
Sbjct: 1509 CARSQGFPDSYQFAGNILHKHRQIGNAVPPPLAYALGRKLKEAVESK 1555


>gi|37039880|gb|AAM96952.1| DNA cytosine-5-methyltransferase [Prunus persica]
          Length = 1564

 Score = 2157 bits (5588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1071/1549 (69%), Positives = 1247/1549 (80%), Gaps = 27/1549 (1%)

Query: 18   TDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEE----PRKRPKRMAACTDFKE 73
            + SS    KK+K K +        +  K K + L Q SEE     RK PKR AAC DFK+
Sbjct: 28   SSSSSGMTKKKKGKQD-----SQKAAPKAKKRNLPQSSEEEPSRSRKMPKRAAACKDFKD 82

Query: 74   KSVRISEKSYLVEAKKDQYADDEIVAVGLTA--RQDGDRPNRRLNDFILHDENGLPQPLE 131
            +SV ISEKS L+E+K+DQ  ++EI+AV LT    QD  RPNRRL DF+LHD  G  QPLE
Sbjct: 83   RSVHISEKSSLIESKEDQIVEEEILAVRLTCGPDQDAVRPNRRLTDFVLHDATGSAQPLE 142

Query: 132  MLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADY 191
            MLE+ D+FISG ILPL ESSD++K + VRCEGFGRIESW ISGYEDGSPVIWLST++ADY
Sbjct: 143  MLEVSDMFISGAILPLNESSDKDKGRSVRCEGFGRIESWDISGYEDGSPVIWLSTEVADY 202

Query: 192  DCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFR 251
            DC KPASSYKKY++ FFEKARACIEVYKKLSK++  NSD ++DELLAG+ RSMSGSK F 
Sbjct: 203  DCRKPASSYKKYFDQFFEKARACIEVYKKLSKSNSDNSDPTLDELLAGIARSMSGSKFFS 262

Query: 252  GGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAAS 311
            G  S+KDFV+SQGEFI+ Q+IGL+ETSKKND+ FAELPVL AL++ES KR NFVQ     
Sbjct: 263  GSASVKDFVLSQGEFIYAQVIGLEETSKKNDRPFAELPVLAALRDESIKRGNFVQSKPGI 322

Query: 312  LGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSG 371
              G L IG     G+  +D  GSS   A+E+EDAKLA+LLQEEE W+S KQ+K QG  S 
Sbjct: 323  SSGTLKIG-----GENGVDSAGSSVVEAEENEDAKLAKLLQEEEYWKSMKQRKRQGPASV 377

Query: 372  MNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYN 431
             +K+YIKINEDEIANDYP P +Y+   EE DE + +D+++D C+ D LPR MLH+W LYN
Sbjct: 378  SSKYYIKINEDEIANDYPLPAYYKNCIEETDEFIVFDNEFDICNADDLPRSMLHNWCLYN 437

Query: 432  SDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFP 491
            SDSRLISLELLPMKPC DIDVTIFGSG M  D+GSGFCLD+D    TS   GAQDA G P
Sbjct: 438  SDSRLISLELLPMKPCADIDVTIFGSGVMSEDDGSGFCLDSDG---TSSGPGAQDADGMP 494

Query: 492  IYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLK 551
            IYLS+IKEWMIE G+SM+ ISIRTD+AWYRLGKPSKQYA WYEP+L+TA++  SIITMLK
Sbjct: 495  IYLSAIKEWMIELGASMVSISIRTDMAWYRLGKPSKQYALWYEPILRTAKIGRSIITMLK 554

Query: 552  EQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKK 611
            +Q+RV+RLSF DVIKRLS  +KD  +YISSDPA VE+YVVVHGQI+LQLF+E+PD QIKK
Sbjct: 555  DQSRVARLSFADVIKRLSGFQKDHCAYISSDPAFVEKYVVVHGQIILQLFSEFPDAQIKK 614

Query: 612  CAFIIGLMKKMEERHHTKWLVKKKKVQKSEI-NLNPRASMGPVVVSKRKVMQATTTRLIN 670
            C F+IGL KKMEERHHTKWLVKKKK+ +    NLNPRASM PVV SKRK MQATTTRLIN
Sbjct: 615  CPFVIGLTKKMEERHHTKWLVKKKKLVEKSESNLNPRASMAPVV-SKRKTMQATTTRLIN 673

Query: 671  RIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQI 730
            RIWGEYYSNYSPED KE    E  E+EEVEE+   E+D  E   ++ E+ Q   S++ Q 
Sbjct: 674  RIWGEYYSNYSPEDSKEGDIGEKKEEEEVEEEDVEEDDVEENPTVM-EQAQKPSSISRQT 732

Query: 731  KSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEY 788
            KS    +EI WEGE V +  SG ALYK+AI+ GE +S+G AVLVE+DE  +LP IYFVEY
Sbjct: 733  KSCLNNREILWEGEPVGQTCSGEALYKRAILWGEEISVGGAVLVELDESHELPAIYFVEY 792

Query: 789  MFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPW 848
            M+E   G K+FHG +M+RGS TVLGNTANEREVFL N+C +L L+++KQ   V I+ +PW
Sbjct: 793  MYETLNGSKMFHGRVMERGSQTVLGNTANEREVFLTNECTNLALKEVKQAAAVGIKVMPW 852

Query: 849  GHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCH 908
            GHQ+RKD A+A++ DRARAEERK+KGLPTEYYCKSLY PERGAF  L  D+MGLG G+CH
Sbjct: 853  GHQYRKDNADANRTDRARAEERKRKGLPTEYYCKSLYCPERGAFLSLSRDTMGLGSGACH 912

Query: 909  ACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVG 967
            +C   E+E+ KE FKV+S KT FVY   EY VHDYVY+SPH+F  ++ E E FKAGRN+ 
Sbjct: 913  SCKMNEAEEAKEVFKVNSSKTGFVYRGVEYSVHDYVYVSPHYFGVERMETEIFKAGRNLV 972

Query: 968  LKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHL 1027
            LK YVVCQ+LEI+V KE KR E++STQVKVRRFFRP+DIS EKAY SDIREVYYSE+TH+
Sbjct: 973  LKAYVVCQVLEIVVMKESKRPEIESTQVKVRRFFRPEDISVEKAYSSDIREVYYSEQTHI 1032

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
            + V+ I  KCEVRKK+D+P CNAP IFQHIFFCEHL+DPSKGS+KQLPAHIKLRYS+G  
Sbjct: 1033 VPVDNIERKCEVRKKSDLPVCNAPVIFQHIFFCEHLYDPSKGSIKQLPAHIKLRYSTGG- 1091

Query: 1088 DSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKW 1147
               A SR++KGKC EGE+  EVE Q   S++  LATLDIFAGCGGLS GL+QSG S TKW
Sbjct: 1092 -GHADSRKRKGKCKEGENVSEVENQRVDSEQKRLATLDIFAGCGGLSNGLRQSGASITKW 1150

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV 1207
            AIEYEEPAG+AFKLNHPESL+ INNCNVILRAVMEKCGD +DC++TSEAAELAASLDE V
Sbjct: 1151 AIEYEEPAGDAFKLNHPESLVFINNCNVILRAVMEKCGDTDDCIATSEAAELAASLDEEV 1210

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
             N+LPLPGQVDFINGGPPC+GFSGMNRF QS W K  C+MI A L+FADYF+P+ F LEN
Sbjct: 1211 KNDLPLPGQVDFINGGPPCRGFSGMNRFTQSPWIKFHCKMIWACLAFADYFRPKLFPLEN 1270

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            VR FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+G+SQSRKRAFIWAA+P + LPEW
Sbjct: 1271 VRKFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGISQSRKRAFIWAAAPEEVLPEW 1330

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
            PEPMHVF  P+LKI LS    Y+AVRSTA GAPFR +TVRDTIGDLP+V NG S+T  EY
Sbjct: 1331 PEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVENGDSRTNKEY 1390

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
            +   VSWFQK IRGN   LTDHI K MNELNLIRC+ IP RPGADWHDLP  KV LS G+
Sbjct: 1391 KEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLSDGR 1450

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
            V ++ P+CLPNTA+RHN WKGL+GRLDW+GNFPTS+TDPQPMGKVGMCFH +Q RILTVR
Sbjct: 1451 VEEMTPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHLEQHRILTVR 1510

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            ECARSQGFPDSY+F G+I HKHRQIGNAVPPTLA+ALG KLKEA++SKR
Sbjct: 1511 ECARSQGFPDSYEFAGNINHKHRQIGNAVPPTLAYALGTKLKEAIDSKR 1559


>gi|2895087|gb|AAC39355.1| Met1-type cytosine DNA-methyltransferase [Daucus carota]
          Length = 1545

 Score = 2151 bits (5573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1066/1562 (68%), Positives = 1257/1562 (80%), Gaps = 27/1562 (1%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEP-- 58
            MGS+A++D+       A D+     K ++  ++    K + SGQK++     + SE P  
Sbjct: 1    MGSSAVVDAP------ALDAGLETKKNKRKNADCDSEKTAVSGQKKQRAHALKSSETPVG 54

Query: 59   -RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLND 117
             RK PKR AAC DFKEKS++IS+KS ++E KKD+  D+E VAV LTA Q+  RP RRL D
Sbjct: 55   SRKMPKRAAACADFKEKSIQISKKSSIIETKKDRSVDEEEVAVRLTAGQEDGRPCRRLTD 114

Query: 118  FILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYED 177
            FI H+ +G+PQ  EMLE+DDL+ISGLILPL++SS +E    ++CEGFGRIE+W++SGYE+
Sbjct: 115  FIFHNSDGIPQAFEMLEVDDLYISGLILPLEDSSQKEA-CSIKCEGFGRIENWALSGYEE 173

Query: 178  GSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELL 237
            G P IW+STD+ADYDC+KP++SYKK+YE  F KA AC+EVYKKLSK+SGGN D S+DELL
Sbjct: 174  GVPTIWVSTDVADYDCVKPSASYKKHYEHLFAKATACVEVYKKLSKSSGGNPDLSLDELL 233

Query: 238  AGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEE 297
            AGVVR +SG KCF   VSIKDF+ISQG+FI+NQL+GLDETSKK DQ+F ELPVL+AL+EE
Sbjct: 234  AGVVRGLSGMKCFSRSVSIKDFIISQGDFIYNQLVGLDETSKKTDQQFLELPVLIALREE 293

Query: 298  SSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELW 357
            SSK  +      AS  G L IG K+ DG+ K D   S+T   +EDE  K+ARLLQEEE W
Sbjct: 294  SSKHGDPSIGKVASTNGTLTIGPKIKDGENKKD---SAT---EEDEGVKVARLLQEEEFW 347

Query: 358  QSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDID 417
             S KQKK +GS++  NK+YIKINEDEIANDYP P +Y+ + +E DE + +D   D+C  D
Sbjct: 348  NSMKQKKGRGSSTSSNKYYIKINEDEIANDYPLPAYYKTANQETDEYIIFDGGADACYTD 407

Query: 418  QLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQC 477
             LPR MLH+W+LYNSDSRLISLELLPMK C DIDVTIFGSG M  D+G+GF LD D+SQ 
Sbjct: 408  DLPRSMLHNWALYNSDSRLISLELLPMKGCADIDVTIFGSGVMTEDDGTGFNLDGDTSQS 467

Query: 478  TSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVL 537
            +S   G  +  G PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQYA WYEPVL
Sbjct: 468  SSAGLGTANVDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYASWYEPVL 527

Query: 538  KTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIV 597
            KTARVAISIIT+LKEQ RVSRLSF DVIKR+SE +K   +YISS PAAVERYVVVHGQI+
Sbjct: 528  KTARVAISIITLLKEQARVSRLSFMDVIKRVSEFEKGHPAYISSVPAAVERYVVVHGQII 587

Query: 598  LQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKV-QKSEINLNPRASMGPVVVS 656
            LQ F E+PDE+IKK AF+IGL  KMEERHHTKWL+KKKK+ Q+ E NLNPRA++ PVV S
Sbjct: 588  LQQFLEFPDEKIKKSAFVIGLTNKMEERHHTKWLMKKKKLLQRDEPNLNPRAALAPVV-S 646

Query: 657  KRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLI 716
            KRK MQATTTRLINRIWGE+YSNYSPED KE    E  E+EE EEQ E EE++ +E    
Sbjct: 647  KRKAMQATTTRLINRIWGEFYSNYSPEDMKEGITGEDKEEEEPEEQEEIEEEEEKETLTA 706

Query: 717  SEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEV 774
             E+     S   + KS    K+I W  + V +  SG ALYK+AIV+G  +++G AVLV+ 
Sbjct: 707  LEKTPTPTSTPRKTKSIPKVKDIRWNRKSVGETLSGEALYKQAIVYGTEIAVGGAVLVD- 765

Query: 775  DELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQD 834
            DE  QLP IY+VEYMFE   G K+ HG ++Q+GS T+LGNTANE EVFL N C D EL D
Sbjct: 766  DESAQLPAIYYVEYMFETLNGIKMLHGRMLQQGSLTILGNTANECEVFLTNDCMDFELAD 825

Query: 835  IKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFI 894
            +K+  VV+IRS PWGHQ+RK  ANADK+ RA  EERKK GL TEYYCKSLY P++GAF  
Sbjct: 826  VKK-AVVEIRSRPWGHQYRKVNANADKIYRAGVEERKKNGLETEYYCKSLYCPDKGAFLS 884

Query: 895  LPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWD 953
            LP++SMGLG G C +C   +   EKE F VHS KTSFV+   EY +HD++Y+SP  F+ +
Sbjct: 885  LPLNSMGLGSGICSSCKLDKDLTEKEKFVVHSDKTSFVFNGTEYSIHDFLYVSPQQFSTE 944

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013
            +   ETFK GRNVGLK Y +CQLLEIIVPK PK+AE  ST++KVRRF+RP+DIS EKAYC
Sbjct: 945  RVGNETFKGGRNVGLKAYAICQLLEIIVPKAPKQAEPHSTEIKVRRFYRPEDISDEKAYC 1004

Query: 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQ 1073
            SDIREVYYSEETH I  E + G+CEVRKKND+P+C+AP IF H+FFCE+L+DP+KGSLKQ
Sbjct: 1005 SDIREVYYSEETHTIDAETVEGRCEVRKKNDLPSCDAPTIFDHVFFCEYLYDPAKGSLKQ 1064

Query: 1074 LPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGL 1133
            LP +IKLRYS+      ++ R+ KGKC EGED+L+  K    S+ N LATLDIFAGCGGL
Sbjct: 1065 LPPNIKLRYSAVKGAHVSSLRKNKGKCKEGEDDLDSLK----SKVNCLATLDIFAGCGGL 1120

Query: 1134 SEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVST 1193
            SEGLQ+SG+ +TKWAIEYEE AG+AFKLNHPESLM INNCNVIL+A+M+K GDA+DC+ST
Sbjct: 1121 SEGLQKSGVCTTKWAIEYEEAAGDAFKLNHPESLMFINNCNVILKAIMDKTGDADDCIST 1180

Query: 1194 SEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS 1253
             EAAELAA L E  I NLPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMILAFLS
Sbjct: 1181 PEAAELAAKLSEEEIKNLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLS 1240

Query: 1254 FADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            FADY++P+YFLLENVR FVSFNKGQTFRL +ASLL+MGYQVRFGILEAGA+GV QSRKRA
Sbjct: 1241 FADYYRPKYFLLENVRTFVSFNKGQTFRLAIASLLDMGYQVRFGILEAGAYGVPQSRKRA 1300

Query: 1314 FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDL 1373
            FIWAASP +TLPEWPEPMHVFAAPELKI L +N  Y+AVRST  GAPFR++TVRDTIGDL
Sbjct: 1301 FIWAASPEETLPEWPEPMHVFAAPELKIALPENKYYAAVRSTQTGAPFRSITVRDTIGDL 1360

Query: 1374 PAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADW 1433
            P V NGAS+T +EYQ DP+SWFQK+IR NM VLTDHISKEMNELNLIRCQ+IPKR GADW
Sbjct: 1361 PMVSNGASRTSIEYQMDPISWFQKKIRANMMVLTDHISKEMNELNLIRCQRIPKRRGADW 1420

Query: 1434 HDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG 1493
             DLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEG+FPTSITDPQPMGKVG
Sbjct: 1421 QDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGSFPTSITDPQPMGKVG 1480

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            MCFHPDQ RI+TVRECARSQGFPDSYQF+G+I HKH+QIGNAVPP LA+ALG KLKEA+E
Sbjct: 1481 MCFHPDQHRIVTVRECARSQGFPDSYQFYGNILHKHQQIGNAVPPPLAYALGMKLKEALE 1540

Query: 1554 SK 1555
            SK
Sbjct: 1541 SK 1542


>gi|296084836|emb|CBI27718.3| unnamed protein product [Vitis vinifera]
          Length = 1429

 Score = 2139 bits (5541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1091/1565 (69%), Positives = 1233/1565 (78%), Gaps = 146/1565 (9%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTS-GQKEKMKKLSQDSEEP- 58
            MGSAALLDSK            MK  K K KS  P TK + + GQK K + +SQ SE+P 
Sbjct: 1    MGSAALLDSKG-----------MKKNKAKLKSVAPSTKKTAAIGQKGKKRNVSQSSEQPV 49

Query: 59   --RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLN 116
              RK PKR AACTDFKE+SVRIS                EI A   T R           
Sbjct: 50   GSRKMPKRAAACTDFKERSVRIS----------------EISATIETKR----------- 82

Query: 117  DFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYE 176
                               D L          ESSD+EK+KGVRCEGFGRIESW+ISGYE
Sbjct: 83   -------------------DQL----------ESSDKEKQKGVRCEGFGRIESWAISGYE 113

Query: 177  DGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDEL 236
            DGSPVIW+STD+ADYDC+KPASSYK +Y+ FFEKARAC+EV++KLSK+SGGN D S+DEL
Sbjct: 114  DGSPVIWVSTDVADYDCVKPASSYKNFYDHFFEKARACVEVFRKLSKSSGGNPDLSLDEL 173

Query: 237  LAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKE 296
            LA VVRSMS S+CF GG SIKDF+ISQGEFI+NQLIGL+ TS ++DQ FAELPVLVAL++
Sbjct: 174  LASVVRSMSASRCFSGGGSIKDFIISQGEFIYNQLIGLEATSNQSDQIFAELPVLVALRD 233

Query: 297  ESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEEL 356
            E  KR +F++    S GG+   G ++ D   + D+        +E++D KLARLLQEEE 
Sbjct: 234  EGCKRGDFMKAKGGSSGGSSMSGLRIRDIGNEADE------SFEENDDVKLARLLQEEEY 287

Query: 357  WQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDI 416
            WQS KQKK+QGS    NK+YIKINEDEIANDYP P +Y+ S +E DE L +DSD   CD 
Sbjct: 288  WQSIKQKKSQGSAPLSNKYYIKINEDEIANDYPLPAYYKTSNQETDEFLVFDSDIYMCDT 347

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
            D+LPR MLH+WSLYNSDSRLISLELLPMKPC DIDVTIFGSG                  
Sbjct: 348  DELPRSMLHNWSLYNSDSRLISLELLPMKPCADIDVTIFGSGV----------------- 390

Query: 477  CTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPV 536
                                  EWMIEFGSSM+FISIRTD+AWYRLGKPSKQYAPWYEPV
Sbjct: 391  ----------------------EWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPWYEPV 428

Query: 537  LKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQI 596
            LKTAR+AISIIT+LKEQ+R++RLSF DVIKR+SE KKD  +YISS+PAAVERYVVVHGQI
Sbjct: 429  LKTARLAISIITLLKEQSRIARLSFADVIKRVSEFKKDHPAYISSNPAAVERYVVVHGQI 488

Query: 597  VLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQK-SEINLNPRASMGPVVV 655
            +LQ FAE+PDE IK+ AF+IGL KKMEERHHTKW+VKK+KV   SE N+NPRA+M PV+ 
Sbjct: 489  ILQQFAEFPDENIKRSAFVIGLAKKMEERHHTKWVVKKRKVVHKSEPNMNPRAAMAPVI- 547

Query: 656  SKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKL 715
            SKRKVMQATTTR+INRIWGEYYSNYSPED KE  +C                        
Sbjct: 548  SKRKVMQATTTRMINRIWGEYYSNYSPEDSKEGASC------------------------ 583

Query: 716  ISEERQISCSVAVQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVE 773
             SE+ Q  CS++ Q K  ST KEI W+GE V K+  G +LYK+AIV G+ +++G  VLVE
Sbjct: 584  -SEKTQRPCSLSRQSKLHSTNKEIRWDGEFVGKTRNGESLYKQAIVCGDKIAVGDTVLVE 642

Query: 774  VDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQ 833
            VDE D+L + YFVEYMFE+  G K+FHG +MQ GS TVLGNTANERE+F  N+C + ELQ
Sbjct: 643  VDESDELTITYFVEYMFESLDGRKMFHGRMMQHGSQTVLGNTANERELFTTNECVEFELQ 702

Query: 834  DIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF 893
            DIKQTV+V+IR  PWGHQHRK+ AN DK+D+A AEERK+KGLP EYYCKSLYWPERGAFF
Sbjct: 703  DIKQTVLVEIRRRPWGHQHRKENANFDKIDKASAEERKRKGLPIEYYCKSLYWPERGAFF 762

Query: 894  ILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTW 952
             LP D+MGLG G CH+C  KES+KEK++FKV+S KTSFVY   EY V+D+VY+SP HF  
Sbjct: 763  SLPFDTMGLGTGFCHSCEIKESQKEKDSFKVNSCKTSFVYKGTEYSVNDFVYVSPQHFAA 822

Query: 953  DKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAY 1012
            ++AE  TFKAGRNVGLK YVVCQ+LEI+VPK PK AE KS QV+VRRFFRP+DISAEKAY
Sbjct: 823  ERAETGTFKAGRNVGLKAYVVCQMLEIVVPKVPKIAETKSIQVQVRRFFRPEDISAEKAY 882

Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLK 1072
            CSDIREVYYSEETH + VE I GKCEV KK+D+P C+ PAIF H+FFCE L+DPSKG LK
Sbjct: 883  CSDIREVYYSEETHSVPVETIEGKCEVMKKHDLPPCDVPAIFDHVFFCERLYDPSKGCLK 942

Query: 1073 QLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGG 1132
            QLPAHIKLRYS+     +AA+R+KKGK  EGE++LEVE+Q  A  EN LATLDIFAGCGG
Sbjct: 943  QLPAHIKLRYSARKEVDDAAARKKKGKAKEGENDLEVERQIDAFHENRLATLDIFAGCGG 1002

Query: 1133 LSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVS 1192
            LSEGLQQSG+S TKWAIEYEEPAG+AFKLNHPESLM INNCNVILRAVMEKCGD +DC+S
Sbjct: 1003 LSEGLQQSGVSVTKWAIEYEEPAGDAFKLNHPESLMFINNCNVILRAVMEKCGDDDDCIS 1062

Query: 1193 TSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFL 1252
            TSEAAELAA+L E  INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFL
Sbjct: 1063 TSEAAELAAALGEKDINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFL 1122

Query: 1253 SFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKR 1312
            SFADYF+P++FLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA+GVSQSRKR
Sbjct: 1123 SFADYFRPKFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVSQSRKR 1182

Query: 1313 AFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGD 1372
            AFIWAASP +TLPEWPEPMHVFA PELKI LS+N QY+AVRSTA GAPFRA+TVRDTIGD
Sbjct: 1183 AFIWAASPEETLPEWPEPMHVFAVPELKITLSENMQYAAVRSTATGAPFRAITVRDTIGD 1242

Query: 1373 LPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            LP V NGAS T +EYQNDPVSWFQK+IRGNM VL DHISKEMNELNLIRCQKIPK+PGAD
Sbjct: 1243 LPDVKNGASITNLEYQNDPVSWFQKKIRGNMVVLMDHISKEMNELNLIRCQKIPKQPGAD 1302

Query: 1433 WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKV 1492
            WH LPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKV
Sbjct: 1303 WHSLPDEKVKLSTGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKV 1362

Query: 1493 GMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            GMCFHP+QDRIL+VRECARSQGF DSYQF G+IQHKHRQIGNAVPP L+FALGRKLKEAV
Sbjct: 1363 GMCFHPEQDRILSVRECARSQGFRDSYQFAGNIQHKHRQIGNAVPPPLSFALGRKLKEAV 1422

Query: 1553 ESKRS 1557
            +SKRS
Sbjct: 1423 DSKRS 1427


>gi|2654108|gb|AAC49931.1| cytosine-5 DNA methyltransferase [Pisum sativum]
          Length = 1554

 Score = 2137 bits (5537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1068/1569 (68%), Positives = 1266/1569 (80%), Gaps = 26/1569 (1%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEP-- 58
            MGSA+LL+  +S+     DS+  +      + EV       +G K+K + LS+ SE+P  
Sbjct: 1    MGSASLLNPSDSSLPGGKDSTSKEEPVSNTEGEV------MAGGKQKKRSLSESSEQPAP 54

Query: 59   -RKRPKRMA--ACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRL 115
             RK PKR A  A  + KEKS  IS+KS LVE KKDQ A+ E++AV +TA Q+ DRPNRRL
Sbjct: 55   TRKVPKRSASAASKNLKEKSFSISDKSCLVETKKDQVAEGELLAVRMTAGQEDDRPNRRL 114

Query: 116  NDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGY 175
             DFILHDE+G  Q LEMLEI DLFI+GLILPL+ ++D++KE+GVRC GFGRIESW ISGY
Sbjct: 115  TDFILHDESGAAQALEMLEIKDLFITGLILPLEGNADKKKEQGVRCHGFGRIESWDISGY 174

Query: 176  EDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDE 235
            EDGSPVIW+ST+IADYDC KPA +YKKYY+LFFEKARAC+EVYKKL+K+SGG+ D S+DE
Sbjct: 175  EDGSPVIWISTEIADYDCQKPAGTYKKYYDLFFEKARACLEVYKKLAKSSGGDPDISLDE 234

Query: 236  LLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALK 295
            LLAG+ RSMSGSK F G  S+K+F+ISQG+FI+ QLIGLD   K ND+ F ++P L+AL+
Sbjct: 235  LLAGMARSMSGSKYFSGTASLKEFIISQGDFIYKQLIGLDTMLKANDKGFEDIPALIALR 294

Query: 296  EESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEE 355
            +ES K+ +F           L IGS + D + K +Q  S     +EDEDAKLARLLQ+EE
Sbjct: 295  DESKKQAHFANTQVRPSNATLRIGSGIVDEE-KKNQMDSVD---EEDEDAKLARLLQDEE 350

Query: 356  LWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCD 415
             W+S +Q+K   S+S  NKFYIKINEDEIANDYP P +Y+ S +E DE + +D+D D  D
Sbjct: 351  YWKSNRQRKNSRSSSSSNKFYIKINEDEIANDYPLPAYYKTSLQETDEFIVFDNDCDIYD 410

Query: 416  IDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSS 475
             +   R MLH+W+LYNSDSRLISLELLPMKPC ++DVTIFGSG M SD+GSGF LDT++ 
Sbjct: 411  TEDPSRSMLHNWALYNSDSRLISLELLPMKPCSEMDVTIFGSGTMTSDDGSGFNLDTEAG 470

Query: 476  QCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEP 535
            Q +S  SGAQD  G PIYLS+IKEWMIEFGSSM+FISIRTDLA   LGKPSKQY PWY+ 
Sbjct: 471  Q-SSVASGAQDTDGIPIYLSAIKEWMIEFGSSMVFISIRTDLAGIGLGKPSKQYTPWYDT 529

Query: 536  VLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQ 595
            VLKTAR+AISIIT+LKEQ+RVSRLSF DVIK++SE  +D  SYISSDP AVERY+VVHGQ
Sbjct: 530  VLKTARIAISIITLLKEQSRVSRLSFPDVIKKVSEYTQDNKSYISSDPLAVERYIVVHGQ 589

Query: 596  IVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQ-KSEINLNPRASMGPVV 654
            I+LQLFAE+PD++I+K  F+ GLM KMEERHHTKWLVKKKK+  KSE NLNPRA+M PVV
Sbjct: 590  IILQLFAEFPDDKIRKSPFVTGLMNKMEERHHTKWLVKKKKLSPKSEPNLNPRAAMAPVV 649

Query: 655  VSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEK 714
             SKRK MQAT T+LINRIWGEYYSN+ PE+ KE TA E  +D+E EEQ ENE++D EEE 
Sbjct: 650  -SKRKAMQATATKLINRIWGEYYSNHLPEESKEGTAIEEKDDDEAEEQEENEDEDAEEET 708

Query: 715  LISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLV 772
            ++ EE      V+ QIK+ S   E+ WEG   RK  SGL LYK+AI+HG     G+ + V
Sbjct: 709  VLLEETLKPRIVSKQIKAFSDDGEVRWEGVPERKTSSGLPLYKQAIIHGGSCFCGN-ICV 767

Query: 773  EVDELDQLPVIYFV--EYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDL 830
                ++Q+  + ++          G K+FHG +MQ G HTVLGN A+EREVFL N+CRDL
Sbjct: 768  SRKLMNQMSFLIYITLNICLNPKNGEKMFHGRMMQHGCHTVLGNAASEREVFLTNECRDL 827

Query: 831  ELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERG 890
             LQD+KQ  V  IR  PWGHQHRK    A K+DR RA+ERKKKGLPTEYYCKSLYWPERG
Sbjct: 828  GLQDVKQINVASIRKTPWGHQHRKASNAAGKIDRERADERKKKGLPTEYYCKSLYWPERG 887

Query: 891  AFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHH 949
            AFF LP D++GLG G CH+C  +E++K KE FKV+S K+SFV    EY ++DYVY+SP  
Sbjct: 888  AFFSLPFDTLGLGSGVCHSCNIQEADKAKEIFKVNSSKSSFVLDGTEYSLNDYVYVSPFE 947

Query: 950  FTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE 1009
            F  +K E  T K+GRNVGLK +VVCQ+LEII  KE K+AE+KST++KVRRFFRP+D+S+E
Sbjct: 948  FE-EKIEQGTHKSGRNVGLKAFVVCQVLEIIAKKETKQAEIKSTELKVRRFFRPEDVSSE 1006

Query: 1010 KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKG 1069
            KAYCSD++EVY+S+ET+ I V+++ GKCEVRKK DIP  +AP  F ++FFCE L+DP+ G
Sbjct: 1007 KAYCSDVQEVYFSDETYTISVQSVEGKCEVRKKIDIPEGSAPGAFHNVFFCELLYDPATG 1066

Query: 1070 SLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAG 1129
            SLK+LP+HIK++YSSG   ++ A+R+KKGKC EG+     + +   S EN LATLDIFAG
Sbjct: 1067 SLKKLPSHIKVKYSSGPT-ADNAARKKKGKCKEGDSISVPDIKSKTSNENRLATLDIFAG 1125

Query: 1130 CGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAED 1189
            CG LSEGL +SG SSTKWAIEYEEPAG AFK NHPE+L+ INNCNVILRA+MEKCGD ++
Sbjct: 1126 CGALSEGLHKSGASSTKWAIEYEEPAGNAFKANHPEALVFINNCNVILRAIMEKCGDIDE 1185

Query: 1190 CVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL 1249
            C+ST+EAAELA+ LD+  +N+LPLPGQVDFINGGPPCQGFSGMNRFN STWSKVQCEMIL
Sbjct: 1186 CISTAEAAELASKLDDKDLNSLPLPGQVDFINGGPPCQGFSGMNRFNTSTWSKVQCEMIL 1245

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
            AFLSFADYF+PRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS
Sbjct: 1246 AFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1305

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDT 1369
            RKRAFIWAASP D LPEWPEPMHVF+APELKI L++N QY+AV STANGAP RA+TVRDT
Sbjct: 1306 RKRAFIWAASPEDVLPEWPEPMHVFSAPELKITLAENVQYAAVCSTANGAPLRAITVRDT 1365

Query: 1370 IGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
            IG+LPAVGNGAS+T MEYQ+DP+SWFQK+IRGNMAVLTDHISKEMNELNLIRCQKIPKRP
Sbjct: 1366 IGELPAVGNGASRTNMEYQSDPISWFQKKIRGNMAVLTDHISKEMNELNLIRCQKIPKRP 1425

Query: 1430 GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM 1489
            G DW DLPDEK+KLSTGQ+VDLIPWCLP+TAKRHNQWKGLFGRLDW+GNFPTSITDPQPM
Sbjct: 1426 GCDWRDLPDEKIKLSTGQLVDLIPWCLPHTAKRHNQWKGLFGRLDWQGNFPTSITDPQPM 1485

Query: 1490 GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            GKVGMCFHPDQDRILTVRECARSQGFPD YQF G+I HKHRQIGNAVPP LAFALGRKLK
Sbjct: 1486 GKVGMCFHPDQDRILTVRECARSQGFPDHYQFSGNIIHKHRQIGNAVPPPLAFALGRKLK 1545

Query: 1550 EAVESKRST 1558
            EA++SK + 
Sbjct: 1546 EALDSKSAN 1554


>gi|233770210|gb|ACQ91178.1| Met1-type cytosine DNA-methyltransferase [Fragaria x ananassa]
          Length = 1565

 Score = 2115 bits (5481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1056/1561 (67%), Positives = 1257/1561 (80%), Gaps = 35/1561 (2%)

Query: 13   NDQKATDS--SEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTD 70
            ND ++  S  S    KK+  K+   E      G+K  +    ++  + RK PKR AAC D
Sbjct: 21   NDAESAPSALSSGTTKKKGRKATQKEAPAGGRGRKRNVPPTGEEQSQSRKMPKRAAACKD 80

Query: 71   FKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGD--RPNRRLNDFILHDENGLPQ 128
            FKE+SVR+SEKS  +E+K++Q   DE +AV +T  +D D  +PNRRL  FILH+E+G+ Q
Sbjct: 81   FKERSVRVSEKSAFIESKEEQVVPDESLAVVMTCGKDPDDEKPNRRLTQFILHNEDGVAQ 140

Query: 129  PLEMLEIDDLFISGLILPLQESSDREKEKG----VRCEGFGRIESWSISGYEDGSPVIWL 184
            PLEM++  DLFI+G +LPL  SSD  K KG    + CEGFGRIE+W ISGY++G P+IWL
Sbjct: 141  PLEMVQHGDLFITGTLLPLDASSDNGKGKGKEKGIICEGFGRIEAWDISGYDEGHPIIWL 200

Query: 185  STDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSM 244
            +TD+ADY C+KPASSYKK+Y+ F EKARACIEVYK LSK    NSDCS+DELLAG+ RSM
Sbjct: 201  TTDVADYCCVKPASSYKKHYDNFCEKARACIEVYKVLSKC---NSDCSLDELLAGIARSM 257

Query: 245  SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENF 304
            SG+K F G  SIK+F+ISQG FI+NQL GL+E+SKKND+  A+LPVL AL++E  K+  +
Sbjct: 258  SGNKFFSGSASIKEFIISQGVFIYNQLEGLEESSKKNDRVLAQLPVLAALRQECIKQGYY 317

Query: 305  VQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKK 364
            V  N A+  G L I S  G+   K++         +EDEDAKLARL+QEEE ++S KQKK
Sbjct: 318  VTSNPAASSGTLKIASDGGNSSSKVE--------TEEDEDAKLARLIQEEEYFKSMKQKK 369

Query: 365  TQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRML 424
             QG TS   KFYIKINEDEIANDYP P +Y+ + EE DE +  DS+    D D LP  ML
Sbjct: 370  RQGVTSMSKKFYIKINEDEIANDYPEPAYYKTAIEETDEFIVVDSE----DGD-LPTHML 424

Query: 425  HDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGS-GFCLDTDSSQCTSGVSG 483
            H+W LYNSDSRLISLELLPMK C DIDVTIFGSG M  D+GS GF LD+  S  +  V+ 
Sbjct: 425  HNWCLYNSDSRLISLELLPMKACADIDVTIFGSGVMSEDDGSCGFDLDSIQSSSSGSVAP 484

Query: 484  -AQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARV 542
             A+DA G P+YLSSIKEW+IE+G+SMI +SIRT+LAWYRLGKPSKQYA WY P+LKTARV
Sbjct: 485  VAEDAYGMPVYLSSIKEWVIEWGASMIPVSIRTELAWYRLGKPSKQYAKWYAPILKTARV 544

Query: 543  AISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFA 602
              SIITMLK ++RV+RLSF DVIKRLSE       YISSDPA+VERYVVVHG I+LQLF 
Sbjct: 545  GRSIITMLKAESRVARLSFADVIKRLSEFPNSNGGYISSDPASVERYVVVHGPILLQLFT 604

Query: 603  EYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQ 662
            E+PD +IK C F+ GL  KME+RHHTKW V KK +QKSE NLNPRASMGPVV SKRK MQ
Sbjct: 605  EFPDGKIKTCPFVHGLRDKMEKRHHTKWEVNKKILQKSESNLNPRASMGPVV-SKRKAMQ 663

Query: 663  ATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEE--QGENEEDDTEEEKLISEER 720
            ATTT+LINRIWGEYYSNYSPE+      CE  E++E +E  Q + EEDD EE   + +E 
Sbjct: 664  ATTTKLINRIWGEYYSNYSPENSSLVETCEKIEEDEADEEVQEDLEEDDAEENSSVVKEA 723

Query: 721  QISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELD 778
            Q    +  +IKS S+ K+   + E V K  SG ALYK A++ GE +S+G AV+VEVD  D
Sbjct: 724  QRPSPILRKIKSSSSSKKGFVDEEPVGKTSSGEALYKHAVLRGEEISVGGAVMVEVDGSD 783

Query: 779  QLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQT 838
            +LPVIYFVEYM+E++ G K+ HG +MQRGS TVLGNTANEREVFL N+C +L L+D+KQT
Sbjct: 784  ELPVIYFVEYMYESSDGEKMLHGRMMQRGSDTVLGNTANEREVFLTNECINLALKDVKQT 843

Query: 839  VVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVD 898
            VVV I+S+PWGH+H+K+ A+A+++DRA AEERKKKGLPTEYYCKSLY PE+GAF  L  D
Sbjct: 844  VVVGIKSMPWGHKHQKENADAERIDRANAEERKKKGLPTEYYCKSLYCPEKGAFLSLSCD 903

Query: 899  SMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEG 957
            ++GLG G C +C   E EK KE F+V+S KT F+Y   EY VHDYVY+SP+HF+    E 
Sbjct: 904  TIGLGSGFCFSCKANEEEKAKEVFEVNSSKTGFIYSGVEYSVHDYVYVSPYHFSVQTIET 963

Query: 958  ETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIR 1017
            E FKAGRN+GLKP+VVCQ+L II  K  K++E+KSTQVKVRRFFRP+DIS EKAYCSD+R
Sbjct: 964  ELFKAGRNLGLKPFVVCQVLGIIT-KGSKQSEMKSTQVKVRRFFRPEDISVEKAYCSDVR 1022

Query: 1018 EVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAH 1077
            EVYYSEE H++ V++I GKCEVR+++D+P CNAPA+FQHIFFCEHL+DPS GSLKQLPA+
Sbjct: 1023 EVYYSEELHILPVDSIEGKCEVRRRSDLPECNAPALFQHIFFCEHLYDPSNGSLKQLPAN 1082

Query: 1078 IKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL 1137
            I+++YS+   D+E  SR++KGKC EGED  EVE+Q   S+   LATLDIFAGCGGLSEGL
Sbjct: 1083 IRVKYSTVGGDTE--SRKRKGKCKEGEDVPEVEQQRVDSEHMRLATLDIFAGCGGLSEGL 1140

Query: 1138 QQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197
             Q+G+S TKWAIEYEEPAG+AF+LNHPES + INNCNVIL+AVM+KCGD +DC+ST++A 
Sbjct: 1141 HQAGVSITKWAIEYEEPAGQAFQLNHPESKVFINNCNVILKAVMDKCGDTDDCISTTDAN 1200

Query: 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY 1257
            +LA++LDE   ++LPLPGQVDFINGGPPCQGFSGMNRFN STWSKVQCEMILAFLSFADY
Sbjct: 1201 DLASALDEKEKSDLPLPGQVDFINGGPPCQGFSGMNRFNTSTWSKVQCEMILAFLSFADY 1260

Query: 1258 FQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWA 1317
            F+P+YFLLENVRNFV+FNKGQTFRLTLASLLEMGYQVRFGILEAGA+GVSQSRKRAFIWA
Sbjct: 1261 FRPKYFLLENVRNFVAFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWA 1320

Query: 1318 ASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVG 1377
            A+P + LPEWPEPMHVF  PELKI LS N  Y+AVRSTA+GAPFR +TVRDTIGDLPAVG
Sbjct: 1321 AAPDEILPEWPEPMHVFGVPELKINLSSNSYYAAVRSTASGAPFRPITVRDTIGDLPAVG 1380

Query: 1378 NGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            NGASK  MEY++DPVSWFQK+IRGNMAVLTDHISKEMNELNLIRC++IPKRPGADW DLP
Sbjct: 1381 NGASKVNMEYESDPVSWFQKKIRGNMAVLTDHISKEMNELNLIRCKRIPKRPGADWKDLP 1440

Query: 1438 DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1497
            +EKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH
Sbjct: 1441 EEKVKLSTGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1500

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            PDQDRI+TVRECARSQGFPDSYQF+G+  HKHRQIGNAVPPTLA+ALGRKLKEA++SK+ 
Sbjct: 1501 PDQDRIITVRECARSQGFPDSYQFYGNTLHKHRQIGNAVPPTLAYALGRKLKEAIDSKKR 1560

Query: 1558 T 1558
            +
Sbjct: 1561 S 1561


>gi|357470695|ref|XP_003605632.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
 gi|355506687|gb|AES87829.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
          Length = 1641

 Score = 2114 bits (5478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1043/1528 (68%), Positives = 1224/1528 (80%), Gaps = 61/1528 (3%)

Query: 42   SGQKEKMKKLSQDSEEP----RKRPKRMA--ACTDFKEKSVRISEKSYLVEAKKDQYADD 95
            +G K++ + LS+ SE+P    RK PKR A  A  + KEKS   S+KS L+E KK+Q  ++
Sbjct: 2    AGGKQQKRSLSESSEQPAAPSRKMPKRSASAASKNLKEKSFSKSDKSDLIETKKNQVVEE 61

Query: 96   EIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREK 155
            E +AV +TA Q+  RPNRR+ DFILHDE+G  Q LEMLEI+DLFI+GLILPL+ S+D++K
Sbjct: 62   EFLAVRMTAGQEDGRPNRRITDFILHDESGAAQQLEMLEINDLFITGLILPLEASADKKK 121

Query: 156  EKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACI 215
            E+G+RCEGFGRIESW ISGYE+G+PVIW+STDIADYDC K  +SYKKYY+ FFEKARACI
Sbjct: 122  EQGIRCEGFGRIESWDISGYEEGAPVIWISTDIADYDCQKSTASYKKYYDQFFEKARACI 181

Query: 216  EVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLD 275
            EV KKL+K++GG+ D S+DELLAG+ RSMSGSK F G  S+K+F+ISQG+FI+ QLIGLD
Sbjct: 182  EVSKKLTKSAGGDPDISLDELLAGLARSMSGSKYFSGAASLKEFIISQGDFIYKQLIGLD 241

Query: 276  ETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSS 335
             T K ND+ F E+P L AL++ES K+ NF           L IGS  GD + K DQ  S 
Sbjct: 242  LTLKANDKGFTEIPALAALRDESKKQANFANAQVMPSNATLRIGSGTGDEEMK-DQMDSV 300

Query: 336  TCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYR 395
                +EDEDAKLARLLQEEE W+SKKQ+K                     NDYP P +Y+
Sbjct: 301  ---HEEDEDAKLARLLQEEEYWKSKKQRKNH----------------HPPNDYPLPAYYK 341

Query: 396  PSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIF 455
             S +E DE + +D+DYD  D + LPR MLH+W+LYNSDSRLISLELLPMKPC +IDV IF
Sbjct: 342  TSLQETDEFIVFDNDYDVYDTEDLPRSMLHNWALYNSDSRLISLELLPMKPCSEIDVPIF 401

Query: 456  GSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRT 515
            GSG M SD+GSGF LDT+  Q +S  S  Q   G PIYLS+IKEWMIEFGSSM+FISIRT
Sbjct: 402  GSGVMTSDDGSGFNLDTEDGQ-SSSASEQQATDGIPIYLSAIKEWMIEFGSSMVFISIRT 460

Query: 516  DLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQ 575
            D+AWYRLGKPSKQY+PWY+ VLKTAR++ISIIT+LKEQ+RVSRLSF DVIK+ SE  +D 
Sbjct: 461  DMAWYRLGKPSKQYSPWYDTVLKTARISISIITLLKEQSRVSRLSFGDVIKKASEFSQDN 520

Query: 576  HSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK 635
             SYISSD  AVERYVVVHGQI+LQLFAE+PD++I+KC F+ GL  KME RHHTKWL+KKK
Sbjct: 521  KSYISSDALAVERYVVVHGQIILQLFAEFPDKKIRKCPFVAGLTSKMEARHHTKWLMKKK 580

Query: 636  KV-QKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEAN 694
            KV  +SE NLNPRA+M PVV SKRK M+ATTT+LIN+IWGEYYSN+ PED KE  A E  
Sbjct: 581  KVLPRSEPNLNPRAAMAPVV-SKRKAMRATTTKLINKIWGEYYSNHLPEDSKEVIASEVK 639

Query: 695  EDEEVEEQGENEEDDTEEEK---LISEERQISCSVAVQIKSRSTKKEITWEG--ECVRKS 749
            +D++  E+ E EE++ E+ +   ++ E  Q   SV+ Q K+ S   EI WEG  E    S
Sbjct: 640  DDDDETEEQEQEENEDEDAEVETVLLEGMQKPHSVSKQTKAFSDDGEIRWEGGPEGKTSS 699

Query: 750  GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSH 809
            GL LY++AIVHGEVVS+G +VLVEVDE D+LP IY+VEYMFE+ GG K+FHG +MQ G  
Sbjct: 700  GLLLYRQAIVHGEVVSVGISVLVEVDESDELPDIYYVEYMFESKGGKKMFHGRMMQHGCQ 759

Query: 810  TVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEE 869
            TVLGN ANEREVFL N+CRDL L D+KQ  VV IR  PWGHQHRK    ADK+DR RAEE
Sbjct: 760  TVLGNAANEREVFLTNECRDLGLHDVKQINVVSIRKTPWGHQHRKANIIADKIDRERAEE 819

Query: 870  RKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KT 928
            RKKKG PTEYYCKSLYWPERGAFF LP D++GLG G C +C  +E+E+EK+ FKV+S K+
Sbjct: 820  RKKKGPPTEYYCKSLYWPERGAFFSLPFDTLGLGSGVCQSCKLQEAEEEKDVFKVNSSKS 879

Query: 929  SFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRA 988
            SFV    EY ++DYVY+SP  F  +K E    K+GRNVGL+ YV+CQ+LEII  KE K+A
Sbjct: 880  SFVLEGTEYSLNDYVYVSPFEFE-EKIEQGAHKSGRNVGLRAYVICQVLEIIAKKETKQA 938

Query: 989  EVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC 1048
            E+KST +KVRRFFRP+D+S+EKAYCSD++EVYYS+ET  I V++I GKC+VRKK D+P  
Sbjct: 939  EIKSTDIKVRRFFRPEDVSSEKAYCSDVQEVYYSDETCTISVQSIEGKCQVRKKIDVPDG 998

Query: 1049 NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELE 1108
             AP IF ++FFCE L+DP+ G+LK+LPAHIK++YSSG  D +AA+R+KKGKC EG+    
Sbjct: 999  CAPGIFHNVFFCELLYDPATGALKKLPAHIKVKYSSGHTD-DAAARKKKGKCKEGDR--- 1054

Query: 1109 VEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLM 1168
                                 CGGLSEGL QSG+SSTKWAIEYEEPAG AFK NHPE+L+
Sbjct: 1055 ---------------------CGGLSEGLHQSGVSSTKWAIEYEEPAGNAFKANHPEALV 1093

Query: 1169 LINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
             INNCNVILRA+MEKCGD +DC+ST+EAAEL++ LDE  ++NLPLPGQVDFINGGPPCQG
Sbjct: 1094 FINNCNVILRAIMEKCGDIDDCISTTEAAELSSKLDEKDLSNLPLPGQVDFINGGPPCQG 1153

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
            FSGMNRFN STWSKVQCEMILAFLSFADYF+PRYFLLENVRNFVSFNKGQTFRLTLASLL
Sbjct: 1154 FSGMNRFNTSTWSKVQCEMILAFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLL 1213

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQ 1348
            EMGYQVRFGILEAGAFGVSQSRKR FIWAASP D LPEWPEPMHVF+APELKI LS+  Q
Sbjct: 1214 EMGYQVRFGILEAGAFGVSQSRKRVFIWAASPEDVLPEWPEPMHVFSAPELKITLSEKVQ 1273

Query: 1349 YSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTD 1408
            Y+AVRST NGAP RA+TVRDTIG+L AVGNGAS+T MEYQ+DPVSWFQ +IRGNMAVLT 
Sbjct: 1274 YAAVRSTTNGAPLRAITVRDTIGELQAVGNGASRTNMEYQSDPVSWFQTKIRGNMAVLTY 1333

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
            HISKEMNELNLIRCQKIPKRPG DW DLPDEK++LS+GQ+VDLIPWCLPNTAKRHNQWKG
Sbjct: 1334 HISKEMNELNLIRCQKIPKRPGCDWRDLPDEKIRLSSGQLVDLIPWCLPNTAKRHNQWKG 1393

Query: 1469 LFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            LFGRLDW+GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD YQF+G+I HK
Sbjct: 1394 LFGRLDWQGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDCYQFYGNIIHK 1453

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            HRQIGNAVPP LAFALGRKLKEAV+SKR
Sbjct: 1454 HRQIGNAVPPPLAFALGRKLKEAVDSKR 1481


>gi|296084835|emb|CBI27717.3| unnamed protein product [Vitis vinifera]
          Length = 1417

 Score = 2111 bits (5470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1046/1522 (68%), Positives = 1190/1522 (78%), Gaps = 141/1522 (9%)

Query: 38   KDSTSGQKEKMKKLSQDSEEP---RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYAD 94
            K + +GQKEK + +SQ SE+P   RK PKR A CTDFKE SV ISEKS  +E K+     
Sbjct: 28   KPAATGQKEK-RNVSQSSEQPVGSRKMPKRAAECTDFKETSVHISEKSVPMETKR----- 81

Query: 95   DEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDRE 154
                                  D ++++E+                             +
Sbjct: 82   ----------------------DQLVYEED-----------------------------Q 90

Query: 155  KEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
            K+KGVRCEGFG IESWSISGYEDGSPVI LSTD+ADYDC+KPA+SYKK+Y+ FFEKARAC
Sbjct: 91   KQKGVRCEGFGPIESWSISGYEDGSPVISLSTDVADYDCIKPANSYKKFYDHFFEKARAC 150

Query: 215  IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
            +EVY+KLSK+SGGN D S+D+LLA VVRSMS SKCF  G SIKDF+I QGEFI NQLIGL
Sbjct: 151  VEVYRKLSKSSGGNPDLSLDKLLASVVRSMSASKCFSSGGSIKDFIILQGEFIHNQLIGL 210

Query: 275  DETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGS 334
            DETS +NDQ F+ELP                                             
Sbjct: 211  DETSNQNDQTFSELP--------------------------------------------- 225

Query: 335  STCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFY 394
                  E++D KLARLLQEEE W+S KQKK+QGS    NK+YIKINEDEIANDYP P +Y
Sbjct: 226  ------ENDDVKLARLLQEEEYWKSTKQKKSQGSAPLSNKYYIKINEDEIANDYPLPAYY 279

Query: 395  RPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTI 454
            + S +E DE   +DSD   CD D+LPR MLH+WSLYNSDSRLISLELLPMKPC DIDVTI
Sbjct: 280  KTSNQETDEFFVFDSDIYMCDTDELPRSMLHNWSLYNSDSRLISLELLPMKPCADIDVTI 339

Query: 455  FGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIR 514
            FGSG M +D+GSGFCLDTD    +S   G QD GG PIYLS+IKEWMIEFGSSM+FISIR
Sbjct: 340  FGSGVMTADDGSGFCLDTDLGHSSSSDQGPQDVGGIPIYLSAIKEWMIEFGSSMVFISIR 399

Query: 515  TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
            TD+AWYRLGKPSKQY PWYEPVLKTAR+ ISIIT+LKEQ+RV+RLSF + IKR+SE +KD
Sbjct: 400  TDMAWYRLGKPSKQYTPWYEPVLKTARLGISIITLLKEQSRVARLSFAEAIKRVSEFEKD 459

Query: 575  QHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
              +YISS+PA VERYV+VHGQI+LQ FAE+PD  IK+ AF+ GL KKMEERHHTKW+VKK
Sbjct: 460  HPAYISSNPADVERYVIVHGQIILQQFAEFPDGNIKRSAFVTGLAKKMEERHHTKWVVKK 519

Query: 635  KKVQK-SEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEA 693
            KKV   SE NLNPR +M PV+ SK+KVMQATTTR+INRIWGEYYSNYSPED K+  +   
Sbjct: 520  KKVVHKSEPNLNPRVAMAPVM-SKKKVMQATTTRMINRIWGEYYSNYSPEDAKDGASS-- 576

Query: 694  NEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGL 751
                                    E+ Q   S+  + K  ST KEI W+GE V K  SG 
Sbjct: 577  -----------------------LEKTQRPSSLPGRSKLHSTSKEIRWDGEFVGKTSSGD 613

Query: 752  ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTV 811
             LYK+AI+ G+ V++G  VLVEVDE D+LPVIY +E MFE+  G K+FHG +MQRGS T+
Sbjct: 614  TLYKQAIIGGDKVTVGGVVLVEVDESDELPVIYLIECMFESFNGRKMFHGRMMQRGSQTL 673

Query: 812  LGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERK 871
            LGNTAN RE+FL N+C + ELQ IKQ VVVDIR +PWGHQHRK+ AN DK+DRA +EERK
Sbjct: 674  LGNTANARELFLTNECLEFELQGIKQMVVVDIRRMPWGHQHRKENANFDKIDRANSEERK 733

Query: 872  KKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHS-KTSF 930
            +KGLP++YYCKSLYWPERGAFF LP D+MG+G G CH+C  KES+KEK++ KV+S KTSF
Sbjct: 734  RKGLPSDYYCKSLYWPERGAFFSLPFDTMGIGTGFCHSCKIKESQKEKDSIKVNSCKTSF 793

Query: 931  VYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEV 990
            VY   EY + ++VY+SP +F  D+ E  TFKAGRNVGLK YVVCQ++ IIVPK PK AE 
Sbjct: 794  VYKGTEYSIDEFVYVSPQYFAVDRMEIGTFKAGRNVGLKAYVVCQMMGIIVPKAPKIAEA 853

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            KST VK+RRFFRP+DISAEKAY SDIREV+YSEETH + VE I GKCEV +K+D+P+C+ 
Sbjct: 854  KSTLVKLRRFFRPEDISAEKAYTSDIREVFYSEETHFVPVEMIEGKCEVIQKHDLPSCDV 913

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A F+HIFFCEHL +PSKGSLKQLP HIK+RYS+     +AA+R++KGK   GED+L+VE
Sbjct: 914  LATFEHIFFCEHLFEPSKGSLKQLPVHIKMRYSARKAVDDAATRKRKGKGKVGEDDLKVE 973

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
            +Q  A QEN LATLDIFAGCGGLSEGLQQSG+S TKWAIEYEEPAG+AFKLNHPES M I
Sbjct: 974  RQKTAFQENCLATLDIFAGCGGLSEGLQQSGVSVTKWAIEYEEPAGDAFKLNHPESSMFI 1033

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
            NNCNVILRAVMEKCGDA+DC+STSEAAELA SL E  INNLPLPGQVDFINGGPPCQGFS
Sbjct: 1034 NNCNVILRAVMEKCGDADDCLSTSEAAELATSLGEKDINNLPLPGQVDFINGGPPCQGFS 1093

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM 1290
            GMNRFNQSTWSKVQCEMILAFLSFADYF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEM
Sbjct: 1094 GMNRFNQSTWSKVQCEMILAFLSFADYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEM 1153

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
            GYQVRFGILEAGA+GVSQSRKR FIWAASP +TLPEWPEPMHVFA PELKI LS N QY+
Sbjct: 1154 GYQVRFGILEAGAYGVSQSRKRVFIWAASPEETLPEWPEPMHVFAVPELKITLSKNMQYA 1213

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
            AVRSTA GAPFRA+TVRDTIGDLPAV NGASKT +EYQN PVSWFQK+IRGNM VLTDHI
Sbjct: 1214 AVRSTATGAPFRAITVRDTIGDLPAVTNGASKTGLEYQNGPVSWFQKKIRGNMMVLTDHI 1273

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
            SKEMNELNLIRCQKIPK+PGADW  LPDEKV LSTGQVVDLIPWCLPNTAKRHNQWKGLF
Sbjct: 1274 SKEMNELNLIRCQKIPKQPGADWRSLPDEKVALSTGQVVDLIPWCLPNTAKRHNQWKGLF 1333

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDR+++VRECARSQGFPDSY+F G+IQHKHR
Sbjct: 1334 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRLVSVRECARSQGFPDSYKFSGNIQHKHR 1393

Query: 1531 QIGNAVPPTLAFALGRKLKEAV 1552
            QIGNAVPP LAFALGRKLKEAV
Sbjct: 1394 QIGNAVPPPLAFALGRKLKEAV 1415


>gi|233770212|gb|ACQ91179.1| Met1-type cytosine DNA-methyltransferase [Fragaria x ananassa]
          Length = 1557

 Score = 2107 bits (5460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1055/1561 (67%), Positives = 1254/1561 (80%), Gaps = 38/1561 (2%)

Query: 13   NDQKATDS--SEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTD 70
            ND ++  S  S    KK+  + E P       G+K       +   + RK PKR AAC D
Sbjct: 16   NDAESAPSAPSSGTTKKKGTQKEAPA---GGRGRKRNAPPTGEGQSQSRKMPKRAAACKD 72

Query: 71   FKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGD--RPNRRLNDFILHDENGLPQ 128
            FKE+SVR+SEKS  +E+K++Q   DE +AV +T  +D D  +PNRRL  FILH+E+G+  
Sbjct: 73   FKERSVRVSEKSAFIESKEEQVVPDESLAVVMTCGKDPDDEKPNRRLTQFILHNEDGVVH 132

Query: 129  PLEMLEIDDLFISGLILPLQESSDREKEKG----VRCEGFGRIESWSISGYEDGSPVIWL 184
            PLEM++  DLFI+G +LPL  SSD  K KG    V CEGFGRIE+W ISGY++G+P+IWL
Sbjct: 133  PLEMVQHGDLFITGTLLPLDASSDNGKGKGKEKGVICEGFGRIEAWDISGYDEGNPIIWL 192

Query: 185  STDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSM 244
            +TD+ADY C+KPASSYKK+Y+ F EKARACIEVYK LSK    NSDCS+DELLAG+ RSM
Sbjct: 193  TTDVADYCCVKPASSYKKHYDNFCEKARACIEVYKVLSKC---NSDCSLDELLAGIARSM 249

Query: 245  SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENF 304
            SG+K F G  SIK+F+ISQG FI+NQL GL+E+SKKND+  A+LPVL AL++E  K+  +
Sbjct: 250  SGNKFFSGSASIKEFIISQGVFIYNQLEGLEESSKKNDRVLAQLPVLAALRQECIKQGYY 309

Query: 305  VQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKK 364
            V  N A+  G L I S  G+   K++         +EDEDAKLARL+QEEE ++S KQKK
Sbjct: 310  VTSNPAASSGTLKIASDGGNSSSKVE--------TEEDEDAKLARLIQEEEYFKSMKQKK 361

Query: 365  TQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRML 424
             QG TS   KFYIKINEDEIANDYP P +Y+ + EE DE +  DS+    D D LP  ML
Sbjct: 362  RQGVTSMSKKFYIKINEDEIANDYPEPAYYKTAIEETDEFIVVDSE----DGD-LPTHML 416

Query: 425  HDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGS-GFCLDTDSSQCTSGVSG 483
            H+W LYNSDSRLISLELLPMK C DIDVTIFGSG M  D+GS GF LD+  S  +  V+ 
Sbjct: 417  HNWCLYNSDSRLISLELLPMKACADIDVTIFGSGVMSEDDGSCGFDLDSIQSSSSGSVAP 476

Query: 484  -AQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARV 542
             A+DA G P+YLSSIKEW+IE+G+SMI +SIRT+LAWYRLGKPSKQYA WY P+LKTARV
Sbjct: 477  VAEDAYGMPVYLSSIKEWVIEWGASMISVSIRTELAWYRLGKPSKQYAKWYAPILKTARV 536

Query: 543  AISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFA 602
              SIITMLK ++RV+RLSF D IKRLSE       YISSDPA+VERYVVVHG I+LQLF 
Sbjct: 537  GRSIITMLKAESRVARLSFADAIKRLSEFPNSNGGYISSDPASVERYVVVHGPILLQLFT 596

Query: 603  EYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQ 662
            E+PD +IK C F+ GL  KME+RHHTKW V KK +QKSE NLNPRASMGPVV SKRK MQ
Sbjct: 597  EFPDGKIKTCPFVHGLRDKMEKRHHTKWEVNKKILQKSESNLNPRASMGPVV-SKRKAMQ 655

Query: 663  ATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEE--QGENEEDDTEEEKLISEER 720
            ATTT+LINRIWGEYYSNYSPE+      CE  E++E +E  Q + EEDD EE   + +E 
Sbjct: 656  ATTTKLINRIWGEYYSNYSPENSSLVETCEKIEEDEADEEVQEDLEEDDAEENSSVVKEA 715

Query: 721  QISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELD 778
            Q    +  +IKS S+ K+   + E V K  SG ALYK A++ GE +S+G AV+VEVD  D
Sbjct: 716  QRPSPILRKIKSSSSSKKGFVDEEPVGKTSSGEALYKHAVLRGEEISVGGAVMVEVDGSD 775

Query: 779  QLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQT 838
            +LPVIYFVEYM+E++ G K+ HG +MQRGS TVLGNTANEREVFL N+C +L L+D+KQT
Sbjct: 776  ELPVIYFVEYMYESSDGEKMLHGRMMQRGSDTVLGNTANEREVFLTNECINLALKDVKQT 835

Query: 839  VVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVD 898
            VVV I+S+PWGH+H+K+ A+A+++DRA AEERKKKGLPTEYYCKSLY PE+GAF  L  D
Sbjct: 836  VVVGIKSMPWGHKHQKENADAERIDRANAEERKKKGLPTEYYCKSLYCPEKGAFLSLSCD 895

Query: 899  SMGLGVGSCHACGTKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEG 957
            ++GLG G C +C   E EK KE F+V+S KT F+Y   EY VHDYVY+SP+HF+    E 
Sbjct: 896  TIGLGSGFCFSCKANEEEKAKEVFEVNSSKTGFIYSGVEYSVHDYVYVSPYHFSVQTIET 955

Query: 958  ETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIR 1017
            E FKAGRN+GLKP+VVCQ+L II  K  K++E+KSTQVKVRRFFRP+DIS EKAYCSD+R
Sbjct: 956  ELFKAGRNLGLKPFVVCQVLGIIT-KGSKQSEMKSTQVKVRRFFRPEDISVEKAYCSDVR 1014

Query: 1018 EVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAH 1077
            EVYYSEE H++ V++I GKCEVR+++D+P CNAPA+FQHIFFCEHL+DPS GSLKQLPA+
Sbjct: 1015 EVYYSEELHILPVDSIEGKCEVRRRSDLPECNAPALFQHIFFCEHLYDPSNGSLKQLPAN 1074

Query: 1078 IKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL 1137
            I+++YS+   D+E  SR++KGKC EGED  EVE+Q   S+   LATLDIFAGCGGLSEGL
Sbjct: 1075 IRVKYSTVGGDTE--SRKRKGKCKEGEDVPEVEQQRVDSEHMRLATLDIFAGCGGLSEGL 1132

Query: 1138 QQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197
             Q+G+S TKWAIEYEEPAG+AF+LNHPES + INNCNVIL+AVM+KCGD +DC+ST++A 
Sbjct: 1133 HQAGVSITKWAIEYEEPAGQAFQLNHPESKVFINNCNVILKAVMDKCGDTDDCISTTDAN 1192

Query: 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY 1257
            +LA++LDE   ++LPLPGQVDFINGGPPCQGFSGMNRFN STWSKVQCEMILAFLSFADY
Sbjct: 1193 DLASALDEKEKSDLPLPGQVDFINGGPPCQGFSGMNRFNTSTWSKVQCEMILAFLSFADY 1252

Query: 1258 FQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWA 1317
            F+P+YFLLENVRNFV+FNKGQTFRLTLASLLEMGYQVRFGILEAGA+GVSQSRKRAFIWA
Sbjct: 1253 FRPKYFLLENVRNFVAFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWA 1312

Query: 1318 ASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVG 1377
            A+P + LPEWPEPMHVF  PELKI LS N  Y+AVRSTA+GAPFR +TVRDTIGDLPAVG
Sbjct: 1313 AAPDEILPEWPEPMHVFGVPELKINLSSNSYYAAVRSTASGAPFRPITVRDTIGDLPAVG 1372

Query: 1378 NGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            NGASK  +EY++DPVSWFQK+IRGNMAVLTDHISKEMNELNLIRC++IPKRPGADW DLP
Sbjct: 1373 NGASKVNIEYESDPVSWFQKKIRGNMAVLTDHISKEMNELNLIRCKRIPKRPGADWKDLP 1432

Query: 1438 DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1497
            +EKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH
Sbjct: 1433 EEKVKLSTGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1492

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            PDQDRI+TVRECARSQGFPDSYQF+G+  HKHRQIGNAVPPTLA+ALGRKLKEAV+SK+ 
Sbjct: 1493 PDQDRIITVRECARSQGFPDSYQFYGNTLHKHRQIGNAVPPTLAYALGRKLKEAVDSKKR 1552

Query: 1558 T 1558
            +
Sbjct: 1553 S 1553


>gi|261414302|gb|ACX83569.1| DNA methyltransferase [Hieracium piloselloides]
          Length = 1547

 Score = 2029 bits (5258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 989/1514 (65%), Positives = 1189/1514 (78%), Gaps = 35/1514 (2%)

Query: 59   RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDF 118
            RK PKR A+CTDFK KS+R+SEKS  +E KK +  D+EI A+ +    +  RPNRRL DF
Sbjct: 48   RKMPKRAASCTDFKTKSIRLSEKSSTIENKKVKIVDEEIAALSIVPGPNNPRPNRRLTDF 107

Query: 119  ILHDENGLPQPLEMLEIDDLFISGLILPLQESSDRE-KEKGVRCEGFGRIESWSISGYED 177
            ILHD  G PQP+EMLE+DDLFISG ILPL+++S++E KE GVRCEGFGRIE WSISGYED
Sbjct: 108  ILHDSEGNPQPVEMLEVDDLFISGQILPLEKTSEKEDKEIGVRCEGFGRIEDWSISGYED 167

Query: 178  GSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELL 237
            GSPVIW+ST++ADYDC+KP+ SYKK++ LF EKA AC+EVYK+LSK+SGGN D S+DELL
Sbjct: 168  GSPVIWVSTELADYDCVKPSGSYKKHFALFQEKANACVEVYKRLSKSSGGNPDLSLDELL 227

Query: 238  AGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEE 297
            A +VRS+SGSK F  GVSI+D ++S G FIF+QL+ LD++ +  D+ F +LPVL AL++E
Sbjct: 228  AAIVRSLSGSKNFPHGVSIRDLIVSWGSFIFDQLVSLDDSPENADRAFVDLPVLTALRDE 287

Query: 298  SSKRENFVQVNAASLGGNLAI---GSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEE 354
            S K E F  VN  +   N  +   G KV   +G            +EDED KLAR+LQE 
Sbjct: 288  SKKHEEFGFVNVPNGVTNAPLKINGEKVNKSNG-----------VEEDEDMKLARVLQEN 336

Query: 355  ELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSC 414
            E WQS K KK Q   +  +K YI+INEDEIANDYP P +Y+   +E DE + +D D+D+ 
Sbjct: 337  ENWQSLKSKKRQKPVNSSSKLYIQINEDEIANDYPLPAYYKTDIQETDEYIIFD-DFDTV 395

Query: 415  DIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDS 474
            D DQLPR MLH+WSLYN DSRLISLELLPMKPC DIDVT+FGSG M +D+GSGFC D +S
Sbjct: 396  DSDQLPRSMLHNWSLYNCDSRLISLELLPMKPCADIDVTVFGSGVMTADDGSGFCFDDES 455

Query: 475  SQCTSGVSGA--QDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPW 532
                S       Q+  G PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQYAPW
Sbjct: 456  GGGRSSGGSNGGQNEDGIPIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPW 515

Query: 533  YEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVV 592
            Y+ VLKTAR+AI+IIT+LKEQTR S+LSF++VIKRLSE  K   ++ISS+PA VERYVVV
Sbjct: 516  YQTVLKTARLAIAIITLLKEQTRASKLSFSEVIKRLSEFDKTNPAHISSNPAIVERYVVV 575

Query: 593  HGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGP 652
            HGQI+LQ FAE+PD+ I++CAF+ GL  KME+RHHTKWLVKKK +     NLNPRA+MGP
Sbjct: 576  HGQIILQQFAEFPDDSIRRCAFVSGLEDKMEQRHHTKWLVKKKAILTKAENLNPRAAMGP 635

Query: 653  VVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETA-------CEANEDEEVEEQGEN 705
            V+ SKRK M ATTTRLINRIWGE+YSNYSPE+ KE           +  E+ E E+  EN
Sbjct: 636  VI-SKRKAMPATTTRLINRIWGEFYSNYSPEEVKEGEGDSVILKEEDEQEENENEDIEEN 694

Query: 706  EEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEV 763
            E ++ EE+ ++ +E +   S   Q KS  +K +I+W G+ + K   G  LYK  ++ GEV
Sbjct: 695  ENENEEEKVVLVQESEKPKSGIKQKKSTLSKTDISWVGKPIGKMPDGKNLYKSVVIRGEV 754

Query: 764  VSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFL 823
            V LGS+V+++ D       IY+VEY+FE +   K  HG +M RG  TVLG+ A+EREVFL
Sbjct: 755  VELGSSVILDEDS------IYYVEYLFEDSDSRKFVHGRLMLRGKETVLGDIASEREVFL 808

Query: 824  ANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKS 883
             N+C D E+ D+ Q V V+IRS+PWGH++RK  AN DK+DRA+AEERK KGLP EY+C+S
Sbjct: 809  TNECMDFEVDDVIQPVAVEIRSLPWGHEYRKSNANFDKLDRAKAEERKNKGLPVEYFCRS 868

Query: 884  LYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDY 942
            LYW ERG FF L  D MG+G G C +CG  E EKEKE F+V+ S T F+Y   EY V D+
Sbjct: 869  LYWAERGGFFSLKRDRMGVGNGICDSCGIVEGEKEKEVFEVNGSTTGFMYMGIEYNVDDF 928

Query: 943  VYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR 1002
            VY+ PH+F  D+   ET+K GRNVGLK YV+CQLL +  PK  K     S  V+VRRFFR
Sbjct: 929  VYVGPHNFDRDEKGNETYKGGRNVGLKAYVICQLLNVESPKSSKLDNPNSVMVQVRRFFR 988

Query: 1003 PDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEH 1062
            P+D+S +KAY SDI+EVYYSEE H + V +I GKCEVR+K D+ + N   I  H+FFCE 
Sbjct: 989  PEDLSLDKAYQSDIQEVYYSEEVHKLAVSSIEGKCEVRRKKDLSSQNTTYITDHVFFCER 1048

Query: 1063 LHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLA 1122
            L+DP+KGSLKQLP +IKL     +  +EAA R++KGK  EGED++E+ +   +  +  L 
Sbjct: 1049 LYDPTKGSLKQLPVNIKLSPPKETPANEAAIRKRKGKSKEGEDDVEMTENKDSVSKIILK 1108

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            TLDIFAGCGGLSEGL ++G S TKWAIEYEEPAG+AF+LNHPE+L  ++NCNVILRA+M 
Sbjct: 1109 TLDIFAGCGGLSEGLTKAGASVTKWAIEYEEPAGDAFRLNHPEALAFVHNCNVILRAIMT 1168

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             CGD +DC+ST+EA E AA LDE +I NLP PGQVDFINGGPPCQGFSGMNRFNQSTWSK
Sbjct: 1169 ACGDVDDCISTTEADEQAAKLDEEMIKNLPRPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1228

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
            VQCEMILAFLSFA+YF+P+YFLLENVRNFVSFNKGQTFRL LASLLEMGYQVRFGILEAG
Sbjct: 1229 VQCEMILAFLSFAEYFRPKYFLLENVRNFVSFNKGQTFRLALASLLEMGYQVRFGILEAG 1288

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
            AFGVSQSRKRAFIWAASP + LPEWPEPMHVFA+PEL++ L+ N QY+A RSTA+GAPFR
Sbjct: 1289 AFGVSQSRKRAFIWAASPEEILPEWPEPMHVFASPELRVSLNGNSQYAAARSTASGAPFR 1348

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
            A+TVRDTIGDLP VGNGAS   +EY+N+PVSWFQKRIRG+ +VLTDHISKEMNELN+IRC
Sbjct: 1349 AITVRDTIGDLPPVGNGASNPTIEYKNEPVSWFQKRIRGDTSVLTDHISKEMNELNVIRC 1408

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
            Q+IPKRPGADW DLP+EKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS
Sbjct: 1409 QRIPKRPGADWRDLPEEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1468

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD Y+F G+IQHKH+QIGNAVPP LA+
Sbjct: 1469 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDGYKFSGNIQHKHKQIGNAVPPPLAY 1528

Query: 1543 ALGRKLKEAVESKR 1556
            ALGRKLKEA+E+K+
Sbjct: 1529 ALGRKLKEAIEAKQ 1542


>gi|261414304|gb|ACX83570.1| DNA methyltransferase [Hieracium pilosella]
          Length = 1569

 Score = 2024 bits (5245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1003/1586 (63%), Positives = 1214/1586 (76%), Gaps = 53/1586 (3%)

Query: 1    MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDST-------SGQKEKMKKLSQ 53
            MG+A  L S+E    K T   EMK K ++ K +  ET D T          K K K+  Q
Sbjct: 1    MGTARALASEEGGAVKPT---EMKKKGKQVK-QTTETSDVTMEDANPKESTKPKPKRGRQ 56

Query: 54   DSEE-----PRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDG 108
            ++ E      RK PKR A+CTDFK KS+R+S+KS  +E KK +  D+EI A+ +    + 
Sbjct: 57   NTTENPPPTSRKMPKRAASCTDFKTKSIRLSDKSSTIENKKVKIVDEEIAALSIVPGPND 116

Query: 109  DRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDRE-KEKGVRCEGFGRI 167
             RPNRRL DFILHD  G PQP+EMLE+DDLFISG ILPL+++S++E KE GVRCEGFGRI
Sbjct: 117  PRPNRRLTDFILHDSEGNPQPVEMLEVDDLFISGQILPLEKTSEKEDKETGVRCEGFGRI 176

Query: 168  ESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGG 227
            E WSISGYEDGSPVIW+ST++ADYDC+KP+ SYKK++ LF EKA AC+EVYK+LSK+SGG
Sbjct: 177  EDWSISGYEDGSPVIWVSTELADYDCVKPSGSYKKHFALFQEKANACVEVYKRLSKSSGG 236

Query: 228  NSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAE 287
            N D S+DELLA +VRS+SGSK F  GVSI+D ++S G FIF+QL+ LD++ +  D+ F +
Sbjct: 237  NPDLSLDELLAAIVRSLSGSKNFPHGVSIRDLIVSWGSFIFDQLVSLDDSPENADRAFVD 296

Query: 288  LPVLVALKEESSKRENFVQVNAASLGGNLAI---GSKVGDGDGKMDQYGSSTCPADEDED 344
            LPVL AL++ES K E F  VN      N  +   G KV   +G            +EDED
Sbjct: 297  LPVLTALRDESKKHEEFGFVNVPKGVTNAPLKINGEKVNKSNG-----------VEEDED 345

Query: 345  AKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDEL 404
             KLAR+LQE E WQS K KK Q   +  +K YI+INEDEIANDYP P FY+   +E DE 
Sbjct: 346  MKLARVLQENENWQSLKSKKRQKPVNSSSKLYIQINEDEIANDYPLPAFYKTDIQETDEY 405

Query: 405  LAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDE 464
            + +D D+D+ D DQLPR MLH+WSLYN DSRLISLELLPMKPC DIDVT+FGSG M +D+
Sbjct: 406  IIFD-DFDTVDSDQLPRSMLHNWSLYNCDSRLISLELLPMKPCADIDVTVFGSGVMTADD 464

Query: 465  GSGFCLDTDSSQCTSGVSGA--QDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRL 522
            GSGFC D +S    S       Q+  G PIYLS+IKEWMIEFGSSM+FI IRTD+AWYRL
Sbjct: 465  GSGFCFDDESGGGGSSGGSNGGQNEDGIPIYLSAIKEWMIEFGSSMVFIPIRTDMAWYRL 524

Query: 523  GKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSD 582
            GKPSKQYAPWY+ VLKTAR+AI+IIT+LKEQTR S+LSF++VIKRLSE  K   ++ISS+
Sbjct: 525  GKPSKQYAPWYQTVLKTARLAIAIITLLKEQTRASKLSFSEVIKRLSEFDKTNPAHISSN 584

Query: 583  PAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEI 642
            PA VERYVVVHGQI+LQ FAE+PD+ I++CAF+ GL  KME+RHHTKWLVKKK +     
Sbjct: 585  PAIVERYVVVHGQIILQQFAEFPDDSIRRCAFVSGLEDKMEQRHHTKWLVKKKAILTKAE 644

Query: 643  NLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPE---------DGKEETACEA 693
            N+NPRA+MGPV+ SKRK M ATTTRLINRIWGE+YSNYSPE         D       + 
Sbjct: 645  NMNPRAAMGPVI-SKRKAMPATTTRLINRIWGEFYSNYSPEEVKEGEGEGDSVILKEEDE 703

Query: 694  NEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGL 751
             E+ E E+  ENE ++ EE+ ++ ++ +   S   Q KS  +K +I+W G+ + K   G 
Sbjct: 704  QEENENEDIEENENENEEEKVVLVQKSEKPKSGIKQKKSTLSKTDISWVGKPIGKMPGGK 763

Query: 752  ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTV 811
             LYK  ++ GEV  LGS+V+++ D       IY+VEY+FE +   K  HG +M RG  TV
Sbjct: 764  NLYKSVVIRGEVAELGSSVILDEDS------IYYVEYLFEDSDSRKFVHGRLMLRGKETV 817

Query: 812  LGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERK 871
            LG+ A+EREVFL N+C D E+ D+ QTV V+IRS+PWGH++RK  AN DK+DRA+AEERK
Sbjct: 818  LGDIASEREVFLTNECMDFEVDDVIQTVAVEIRSLPWGHEYRKSNANFDKIDRAKAEERK 877

Query: 872  KKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSF 930
             KGLP EY+C+SLYW ERG FF L  D MG+G G C +CG  E EK+KE ++V+ SK  F
Sbjct: 878  NKGLPVEYFCRSLYWAERGGFFSLKTDRMGVGNGICDSCGIVEGEKKKEVYEVNGSKMGF 937

Query: 931  VYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEV 990
            +Y   EY V D+VY+ PH+F  D+   ET K GRNVGLK YV+CQL++I  PK  K    
Sbjct: 938  MYMGIEYNVDDFVYVGPHNFDKDERGNETHKGGRNVGLKAYVICQLIKIESPKNLKVDNP 997

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
             S  V+VRRFFRP+D+S +KAY SDI+EVYYSEE H + V +I GKCEVR+K D+ + N 
Sbjct: 998  NSVMVQVRRFFRPEDLSLDKAYRSDIQEVYYSEEVHKLAVSSIEGKCEVRRKKDLSSQNT 1057

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
              I  H+FFCE L+DP+KGSLKQLP +IKL     +  +EAA R++KGK  EGED++E+ 
Sbjct: 1058 TYITDHVFFCERLYDPTKGSLKQLPVNIKLSPPKETPANEAAIRKRKGKSKEGEDDVEMT 1117

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
            +   +  +N L TLDIFAGCGGLSEGL ++G S TKWAIEYEEPAG+AF+LNHPE+L  +
Sbjct: 1118 ENKDSVSKNILKTLDIFAGCGGLSEGLTKAGASVTKWAIEYEEPAGDAFRLNHPEALAFV 1177

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
            +NCNVILRA+M  CGD +DC+ST+EA E AA LDE +I NLP PGQVDFINGGPPCQGFS
Sbjct: 1178 HNCNVILRAIMTACGDVDDCISTTEADEQAAKLDEEMIKNLPRPGQVDFINGGPPCQGFS 1237

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM 1290
            GMNRFNQSTWSK QCEMILAFLSFA+YF+P+Y LLENVRNFVSFNKGQTFRL LASLLEM
Sbjct: 1238 GMNRFNQSTWSKAQCEMILAFLSFAEYFRPKYSLLENVRNFVSFNKGQTFRLALASLLEM 1297

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
            GYQVRFGILEAGAFGVSQSRKRAFIWAASP + LPEWPEPMHVFA+PEL++ L+ N QY+
Sbjct: 1298 GYQVRFGILEAGAFGVSQSRKRAFIWAASPEEILPEWPEPMHVFASPELRVSLNGNSQYA 1357

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
            A RSTA+GAPFRA+TVRDTIGDLP VGNGAS   +EY+N+PVSWFQKRIRG+ +VLTDHI
Sbjct: 1358 AARSTASGAPFRAITVRDTIGDLPPVGNGASNPTIEYKNEPVSWFQKRIRGDASVLTDHI 1417

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
            SKEMNELN+IRCQ+IPKRPGADW DLP+EKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLF
Sbjct: 1418 SKEMNELNVIRCQRIPKRPGADWRDLPEEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLF 1477

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD Y+F G+IQHKH+
Sbjct: 1478 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDGYKFSGNIQHKHK 1537

Query: 1531 QIGNAVPPTLAFALGRKLKEAVESKR 1556
            QIGNAVPP LA+ALG+KLKEA+E+K+
Sbjct: 1538 QIGNAVPPPLAYALGKKLKEAIEAKQ 1563


>gi|449462818|ref|XP_004149137.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis
            sativus]
          Length = 1523

 Score = 1999 bits (5178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1005/1559 (64%), Positives = 1203/1559 (77%), Gaps = 66/1559 (4%)

Query: 12   SNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDF 71
            SND + +D+  +K  K K K    E  +   G               RK PKR A+C+DF
Sbjct: 13   SNDLEKSDTKNVKAVKPKQKRNRLENGEQVVGV--------------RKMPKRAASCSDF 58

Query: 72   KEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPNRRLNDFILHDENGLPQPL 130
            K K++++ EKS ++E K++   +DEI AVGLT   QD  RPNRRL +F  HDE+G PQ +
Sbjct: 59   KVKTIQLPEKSSVIECKREVTVEDEIAAVGLTTLGQDDSRPNRRLTEFTFHDEDGKPQAV 118

Query: 131  EMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIAD 190
            EMLE++DLFISG+ILP ++ SD+EK KGVRCEGFGRIESW+ISGYEDGSP IW+STD+AD
Sbjct: 119  EMLEVNDLFISGVILPFEDISDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVAD 178

Query: 191  YDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCF 250
            YDC++PA+ YKK Y +F+EKA AC+EVYKKL+++SGG  D +++ELL GVVRS++ S+ F
Sbjct: 179  YDCVRPAAGYKKLYNIFYEKANACVEVYKKLARSSGGYPDLTLEELLGGVVRSLNSSRNF 238

Query: 251  RGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAA 310
              G+S+KDF+I QGEFI+NQLIGLD+TSKKNDQ F +LPVL AL++ES K+ N +  NA 
Sbjct: 239  PAGMSVKDFIILQGEFIYNQLIGLDDTSKKNDQVFTDLPVLCALRDESRKQGNLLP-NAG 297

Query: 311  SLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTS 370
               G   +G K+ DG+ +++         +EDED KLA+LLQEEE W+S KQ+KTQ ST+
Sbjct: 298  IFDGFTNLGLKIKDGE-QLNPPNILGSGDEEDEDLKLAKLLQEEEYWRSAKQRKTQRSTT 356

Query: 371  GMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLY 430
              NKFYIKINEDEIANDYP P FY+ +++E DE + +D D D CD D LPR MLH+WSLY
Sbjct: 357  SSNKFYIKINEDEIANDYPLPAFYKTTKDEMDEYVIFDGDMDVCDPDDLPRSMLHNWSLY 416

Query: 431  NSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGF 490
            NSDSRLISLELLPMKPC+DIDVTI+GSG M +D+GSGFCLD D+SQ  S  S  Q+  G 
Sbjct: 417  NSDSRLISLELLPMKPCDDIDVTIYGSGIMTADDGSGFCLDADTSQSCS--SQMQNTDGI 474

Query: 491  PIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITML 550
            PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQYAPWY+ VLKTAR+AI II +L
Sbjct: 475  PIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPWYQTVLKTARLAICIIMLL 534

Query: 551  KEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIK 610
            KEQ+R S+LSF  +IK++SE  K+  +YISS P+ VERYVVVHGQI+LQ F+EYPD+ I+
Sbjct: 535  KEQSRASKLSFAVIIKKISEFDKNNPAYISSIPSVVERYVVVHGQIILQTFSEYPDDMIR 594

Query: 611  KCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLIN 670
            KCAFI GL  KMEERHHTKWLV+KK V K E N+NPRASM PV  + RK M ATTTRLIN
Sbjct: 595  KCAFITGLSDKMEERHHTKWLVRKKAVLKQEANMNPRASMKPV--TSRKAMPATTTRLIN 652

Query: 671  RIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQI------SC 724
            RIWGE+YSNYSPED K   A + NE +E E + E E +D E E++  E+ Q+      S 
Sbjct: 653  RIWGEFYSNYSPEDLK---AADNNETKEDEPEEEEEVEDEESEEVEEEDGQVDLKTKESK 709

Query: 725  SVAVQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPV 782
             V    K++ ++    W+G+ V K+  G  LYK+AIVHG++V++G  V VE D +  LP 
Sbjct: 710  PVVKPAKAKLSEGNNKWDGKMVGKTSEGYPLYKQAIVHGDLVAVGGFVSVETDNVHDLPA 769

Query: 783  IYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVD 842
            IY VEYM+E + G K+ HG ++ RG  TVLGN A EREVFL N C + EL +I++ VVV+
Sbjct: 770  IYLVEYMYEKSNGRKMVHGRLLVRGLETVLGNAAKEREVFLTNDCLEFELNEIREAVVVE 829

Query: 843  IRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL 902
                PWG+QHRK  A  DK +  RAEERK +GLP E+YCKSLYWPE+GAFF LP ++MGL
Sbjct: 830  SCMRPWGYQHRKANAKKDKAEEERAEERKHRGLPMEFYCKSLYWPEKGAFFCLPKETMGL 889

Query: 903  GVGSCHACGTKESEKEKETFKVHSK-TSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFK 961
            G G CH+C  KE+++E +T K+HS  TSF Y   +Y V+D VY++PHHF  D+   ETFK
Sbjct: 890  GTGDCHSCKLKETQRE-DTMKLHSSLTSFTYRGTDYSVNDCVYLAPHHFGTDERGIETFK 948

Query: 962  AGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYY 1021
             GRNV L  YVVCQLL I  PK  K+    ST V+VRRFFRP+DIS EKAYCSDI  +  
Sbjct: 949  GGRNVVLNAYVVCQLLGIESPKGSKQPCPVSTMVQVRRFFRPEDISVEKAYCSDIPVLLT 1008

Query: 1022 SEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLR 1081
            S+ +                            F HIFFCEHL+DP KG++K+LPA +KL 
Sbjct: 1009 SQYSX---------------------------FDHIFFCEHLYDPEKGAIKKLPASVKLS 1041

Query: 1082 YSSGSLDSEAASRRKKGKCIEGE---DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQ 1138
              S    S+AA R+KKGKC EGE   DE E +K      EN LATLDIFAGCGGLSEGLQ
Sbjct: 1042 SPSERQISDAAQRKKKGKCKEGEIIPDENENKKD--LPLENRLATLDIFAGCGGLSEGLQ 1099

Query: 1139 QSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198
            Q+G+S TKWAIEYEEPAGEAF LNHPE+L  +NNCNVILRAVM+ CGDA+DC+STSEA E
Sbjct: 1100 QAGVSVTKWAIEYEEPAGEAFSLNHPEALTFVNNCNVILRAVMKACGDADDCISTSEAIE 1159

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
            LA  LD+  INNLP PGQV+FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFA+YF
Sbjct: 1160 LAEKLDDKEINNLPRPGQVEFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFAEYF 1219

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
            +P+YFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV+FGILEAGA+G+SQSRKRAFIWAA
Sbjct: 1220 RPKYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVKFGILEAGAYGISQSRKRAFIWAA 1279

Query: 1319 SPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN 1378
            SP + LPEWPEPMHVF +PELKI LSDN +Y+AV STA GAPFR +TVRDTIGDLPAVGN
Sbjct: 1280 SPEEILPEWPEPMHVFGSPELKISLSDNTRYAAVPSTAGGAPFRPITVRDTIGDLPAVGN 1339

Query: 1379 GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
            GAS   MEY+++P SWFQK+IRG++ VL DHISKEMNELNLIRCQ+IPKRPGADW DLPD
Sbjct: 1340 GASVITMEYKSEPASWFQKKIRGDVLVLNDHISKEMNELNLIRCQRIPKRPGADWRDLPD 1399

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
            EKV+LS GQ+ DLIPWCLPNTAKRHNQWKGLFGRL+WEGNFPTSITDPQPMGKVGMCFHP
Sbjct: 1400 EKVRLSNGQMHDLIPWCLPNTAKRHNQWKGLFGRLEWEGNFPTSITDPQPMGKVGMCFHP 1459

Query: 1499 DQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            +QDRILTVRECARSQGFPDSY+F G+IQHKHRQIGNAVPP LA+ALGRKL+EA+E K S
Sbjct: 1460 EQDRILTVRECARSQGFPDSYKFAGNIQHKHRQIGNAVPPPLAYALGRKLREAIEMKSS 1518


>gi|255573870|ref|XP_002527854.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
 gi|223532778|gb|EEF34557.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
          Length = 1584

 Score = 1957 bits (5071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 986/1559 (63%), Positives = 1188/1559 (76%), Gaps = 27/1559 (1%)

Query: 12   SNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEE---PRKRPKRMAAC 68
            S++ K T ++E  +  ++ K   PE  D  + + +  + LS++ E     RK  KR AAC
Sbjct: 16   SDNNKKTGAAEDTSNIQESK---PENGDGAASKVKLKRGLSKNVENVYSSRKMTKRAAAC 72

Query: 69   TDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQ 128
            +DFKEK +  SE+    E KK+   + E VA+GLTA +D  RPNRRL DFI HD  G  Q
Sbjct: 73   SDFKEKPLDFSEEYSFTEIKKEVIVEHEAVALGLTAGRDDLRPNRRLKDFIFHDAYGNIQ 132

Query: 129  PLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDI 188
             +EMLE  DLFISGLI+PL+ESSD++KEKG+RC GFGR+ESW+ISGYE+GSPVIW+STD+
Sbjct: 133  AVEMLEFFDLFISGLIVPLEESSDKDKEKGIRCNGFGRVESWAISGYEEGSPVIWVSTDM 192

Query: 189  ADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSK 248
            ADYDC+KPA+ YKK Y LFFEKA AC+EVY+KLS+  GG+ + S DEL+AGVVR+MSGSK
Sbjct: 193  ADYDCIKPANRYKKLYNLFFEKAHACVEVYRKLSRMHGGDPNISFDELIAGVVRAMSGSK 252

Query: 249  CFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVN 308
             F  G+SIKDF+ISQGEFI+NQLIGLD TSKKNDQ    LPVL+A+++E  KRE      
Sbjct: 253  NFPQGMSIKDFIISQGEFIYNQLIGLDATSKKNDQMLTGLPVLLAMRDEKKKREGLFMHE 312

Query: 309  AASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGS 368
            A + G  +     +   DGK+     S+  A+EDED KLA L QE E W S KQ K + S
Sbjct: 313  ATTTGRTVNRNLTI---DGKLTNQLLSSSLAEEDEDMKLASLRQEVENWLSMKQNKRRFS 369

Query: 369  TSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWS 428
                + FYIKINEDEI NDYP+P +Y+ S EE DE L    D    +I   P  +LH+W+
Sbjct: 370  VPS-SHFYIKINEDEIVNDYPWPTYYKTSAEEIDEFLVICDD----EIFNPPENVLHNWT 424

Query: 429  LYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISD-EGSGFCLDTDSSQCTSGVSGAQDA 487
            LYNSD+RLISLELLPM+ C D D+TIF SG +  D + SG  LD +S   +S  S  QD 
Sbjct: 425  LYNSDARLISLELLPMRYCADADMTIFASGIVTKDGDLSGRYLDVNSDLPSSASSDVQDV 484

Query: 488  GGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISII 547
            G  PIY S+IKEW IEFGSSMIFIS+RTDL+WYRLGKPSKQYAPWY+PV+KTAR+AISII
Sbjct: 485  G-LPIYTSAIKEWKIEFGSSMIFISLRTDLSWYRLGKPSKQYAPWYKPVVKTARLAISII 543

Query: 548  TMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDE 607
            T+L+EQ RVSRLSF DVI+R+S+  +  H++ISS  A VERYVVVHGQI+LQLF+E+P +
Sbjct: 544  TLLQEQRRVSRLSFADVIQRVSKFNEGHHAFISSLAAEVERYVVVHGQIILQLFSEFPVK 603

Query: 608  QIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTR 667
             I+ C F+  L  KM++ +H K  VK+K+V K  +NLNPR ++    +S+RK M ATTT+
Sbjct: 604  AIQNCPFVTDLHSKMQQINHLKLRVKEKRVLKKGLNLNPREAVA--TISERKAMAATTTK 661

Query: 668  LINRIWGEYYSNYSPE-----DGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQI 722
            LINRIWG+YYSNYSPE     DG E    +   +E+ E + E+ E+  E++  I ++ + 
Sbjct: 662  LINRIWGDYYSNYSPEESNGADGLEIKEDDEVVEEQEESEEEDSEEIEEQKMEIEKKSEK 721

Query: 723  SCSVAVQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQL 780
            + S       + + +EI W G  + KS  G A YKKA VHG +V++G  V++   + DQL
Sbjct: 722  TRSTEKLNTWQCSNQEIRWVGGLLGKSCTGKAFYKKAFVHGGIVAVGDFVMLGTTDADQL 781

Query: 781  PVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVV 840
              IYFVEYMFE +   K+ HG +M  GS TVLGNTAN+RE+FLAN C + EL D+KQ VV
Sbjct: 782  SPIYFVEYMFENSDMRKMAHGKLMLYGSQTVLGNTANKRELFLANDCLEFELSDVKQNVV 841

Query: 841  VDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSM 900
            V+ +  PWG++HRK     D+ DR R EER+ KGLP EY+CKS Y PERGAF  L  D+M
Sbjct: 842  VEFKLTPWGYRHRKASIIKDRTDRERTEERRCKGLPMEYFCKSQYLPERGAFICLSKDTM 901

Query: 901  GLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGET 959
            GLG G CH+C TKE +  KE+F+++ S  SFVY   EY +HDYVY +PHHFT D  + +T
Sbjct: 902  GLGNGVCHSCKTKEIQMGKESFRLNLSSDSFVYKGTEYCIHDYVYRAPHHFTVDVMDLQT 961

Query: 960  FKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREV 1019
            FK GRNV L+PYVVCQLLEI V K   +   +S  VKVRRFFR +DISAE AYCSDIREV
Sbjct: 962  FKGGRNVRLRPYVVCQLLEIQVGKGLLQVTPESILVKVRRFFRSEDISAENAYCSDIREV 1021

Query: 1020 YYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK 1079
            YYSE      +  I GKCEVRKK+D+P+ +  AIF+HIFFCEH++DP KG++KQLPAHIK
Sbjct: 1022 YYSEHIETFPILDIQGKCEVRKKHDLPSFDKLAIFEHIFFCEHIYDPEKGTIKQLPAHIK 1081

Query: 1080 LRYSSGSLDSEAASRRKKGKCIEGEDELEVE-KQGGASQENHLATLDIFAGCGGLSEGLQ 1138
            L  S   ++ +   R+KKGKC EGE++ +   K+  A   N LATLDIFAGCGGLSEGL+
Sbjct: 1082 LSSSKERMNDDILYRKKKGKCKEGENDFDDNVKRSEALSRNQLATLDIFAGCGGLSEGLE 1141

Query: 1139 QSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198
            ++GIS TKWAIEYEEPAGEAFK NHPE+LMLINNCNVILRA+M  CGDA+DC+ TSEA+E
Sbjct: 1142 RAGISVTKWAIEYEEPAGEAFKQNHPEALMLINNCNVILRAIMSACGDADDCICTSEASE 1201

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
            LA  LDE  I+N P PG+V+FINGGPPCQGFSGMNRFNQ +WSKVQCEMILAFLSFADYF
Sbjct: 1202 LAEKLDEKEISNFPRPGEVEFINGGPPCQGFSGMNRFNQRSWSKVQCEMILAFLSFADYF 1261

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
            +P++FLLENVRNFVSFNKG TFRLTLASLLEMGYQVRFG+LEAGAFG+SQSRKRAFIWAA
Sbjct: 1262 RPKFFLLENVRNFVSFNKGNTFRLTLASLLEMGYQVRFGVLEAGAFGISQSRKRAFIWAA 1321

Query: 1319 SPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN 1378
            SP + LPEWPEPMHVFA PELKI LS N QY+AVRSTANGAPFRA+TVRDTIGDLPAVGN
Sbjct: 1322 SPEEILPEWPEPMHVFAGPELKIKLSGNSQYAAVRSTANGAPFRAITVRDTIGDLPAVGN 1381

Query: 1379 GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
            GAS T M+Y+N+PVSWFQK IRG+  VLTDHISKEMNELNLIRC++IPK PGADW DLPD
Sbjct: 1382 GASLTTMQYKNEPVSWFQKTIRGDALVLTDHISKEMNELNLIRCKRIPKHPGADWRDLPD 1441

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
            +KVKLS GQ+VDL+PWCLPNTAKRHNQWKGLFGRLDWEGNFPTS+TDPQPMGKVGMCFHP
Sbjct: 1442 KKVKLSNGQLVDLVPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSVTDPQPMGKVGMCFHP 1501

Query: 1499 DQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            +QDRILTVRECARSQGF DSYQF G+IQ KHRQIGNAVPP LAFALGRKLKEAVE KRS
Sbjct: 1502 EQDRILTVRECARSQGFADSYQFLGNIQQKHRQIGNAVPPPLAFALGRKLKEAVEMKRS 1560


>gi|159461698|gb|ABW96888.1| MET1-type DNA-methyltransferase [Elaeis guineensis]
          Length = 1543

 Score = 1935 bits (5012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 961/1517 (63%), Positives = 1168/1517 (76%), Gaps = 36/1517 (2%)

Query: 53   QDSEEP--RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDR 110
            +D EEP   KRPKR AAC++FKEKSVR+S+KS ++E+KK++  ++E+ AV LT     D 
Sbjct: 51   EDREEPVAHKRPKRAAACSNFKEKSVRLSDKSAVLESKKNRLVEEEMAAVDLTKLGPEDL 110

Query: 111  PN-RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIES 169
            P  R+L DFILHD +G PQP EM EIDDLFI+ L++P+ +  ++E+E+GV+CEGFGRIES
Sbjct: 111  PPCRKLLDFILHDADGNPQPFEMSEIDDLFITALVMPMDDDLEKERERGVKCEGFGRIES 170

Query: 170  WSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNS 229
            WSISGY++GS V W+ST+  DY+C+KPASSY+++Y+ F++KA  C+EVY+KL++++GGN 
Sbjct: 171  WSISGYDEGSAVAWISTESVDYECVKPASSYRRFYDHFYDKACICVEVYRKLARSAGGNP 230

Query: 230  DCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELP 289
            D S++ELLA VVRSM+G+K   GG   KDFVIS G+FI+ QL+GLDET++ N    A LP
Sbjct: 231  DLSLEELLAAVVRSMNGTKNASGGFVSKDFVISLGDFIYKQLVGLDETTENNHANLATLP 290

Query: 290  VLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLAR 349
             LVAL+ E   R  + +V              V +G  K+ + G+      EDED KLAR
Sbjct: 291  ALVALRNECKSRIEYNRVPPM-----------VSNGSVKIKEGGN--VEGTEDEDEKLAR 337

Query: 350  LLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDS 409
            LLQEEE W+  KQ++ + S +     YIKI+E EIANDYP P +Y PS EE DE + +DS
Sbjct: 338  LLQEEEEWKLMKQQRGRRSGTSQRNIYIKISEAEIANDYPLPAYYEPSVEEMDEYIYFDS 397

Query: 410  DYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFC 469
            D        LPRR+L +W+LYNSDSRLISLEL+PMKPC +IDVT FGSG M  D+GSGFC
Sbjct: 398  D-SYMSYPDLPRRVLDNWALYNSDSRLISLELIPMKPCTEIDVTAFGSGNMRMDDGSGFC 456

Query: 470  LDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQY 529
            L+ D  Q +S  S + D G FPIYLS+IKEWMIEFGSS+IF+SIRTD AWYRLGKP+KQY
Sbjct: 457  LEADPGQSSSNTSDSLDCG-FPIYLSAIKEWMIEFGSSIIFVSIRTDCAWYRLGKPTKQY 515

Query: 530  APWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERY 589
            APW+EPVLKTA VAISII +LKEQ+RVSRLSF DVIK++S+ +K   ++ISS+   VERY
Sbjct: 516  APWFEPVLKTANVAISIIKLLKEQSRVSRLSFADVIKKVSDFEKGHPAHISSNLTLVERY 575

Query: 590  VVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRAS 649
            +VVHGQI+LQ FAEYPDE I+KCAF+ GL  K  ER HTK ++KKK V K E NLNP A+
Sbjct: 576  IVVHGQIILQQFAEYPDENIRKCAFVTGLSDKRMERQHTKLVMKKKVVVKKEENLNPSAT 635

Query: 650  MGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDD 709
            M PV+ SKR VM+ATTTRLINRIWG+YYSNY PED KE+      ++ E  E+ E EE +
Sbjct: 636  MRPVL-SKRDVMRATTTRLINRIWGDYYSNYFPEDLKEDY--HEMKEVEEPEENEEEEME 692

Query: 710  TEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLG 767
             E   +  E     CS     K +   KEI W+GE   +  +G ALY +A+V G V + G
Sbjct: 693  EENILVQGEITSKPCSSIQSHKPKLNSKEIKWDGEPTDRMDTGEALYGRAVVRGIVFATG 752

Query: 768  SAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQC 827
             AV VE DEL+++P I FVEYMFE   G K  HG +M++GS TVLGN ANEREVFL N+C
Sbjct: 753  GAVTVEADELEEMPTILFVEYMFEKLDGMKKVHGRVMKKGSQTVLGNAANEREVFLTNEC 812

Query: 828  RDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWP 887
             + EL DIK++V V+IR   WGH+HRK+  + DK+DRA+AEERK+KGLP E++CKSLYWP
Sbjct: 813  MEFELGDIKESVTVEIRLQLWGHKHRKEYFDEDKIDRAKAEERKRKGLPMEFFCKSLYWP 872

Query: 888  ERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISP 947
            ++GAF  LP D +GLG G C++C  +ESE  +  FK++S TSFVY   EY VHD++Y++P
Sbjct: 873  QKGAFLALPYDDLGLGTGVCNSCIWRESESNE--FKINSMTSFVYNNTEYNVHDFLYVTP 930

Query: 948  HHFTWDKAEGE-TFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDI 1006
              F  +K E   TFKAGRNVGLK YVVC LLEI VP  PK+   KSTQVKVRRF+ P++I
Sbjct: 931  QFFGENKIEDRGTFKAGRNVGLKAYVVCHLLEIDVPSGPKQPTPKSTQVKVRRFYIPENI 990

Query: 1007 SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDP 1066
            SA  AYCSDIREVYYSEE   + VE I GKCEVRK+ND+P  + P +  H+FFC++ +DP
Sbjct: 991  SAAPAYCSDIREVYYSEEIISVPVEMIEGKCEVRKRNDLPNLDFPVVIDHVFFCDYSYDP 1050

Query: 1067 SKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCI-----EGEDELEVEKQGGASQENHL 1121
             KG+L QLPA++K      SL   A++  +K         EGE +   +K    +QEN L
Sbjct: 1051 VKGALNQLPANVKFT----SLTRRASNTTRKKNKGKEKCKEGEQDGS-DKLKDMAQENRL 1105

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            ATLDIFAGCGGLS GLQQSG+S TKWAIEYE+PAGEAF  NHPE+LM I+NCNVILRA+M
Sbjct: 1106 ATLDIFAGCGGLSAGLQQSGVSFTKWAIEYEQPAGEAFSENHPETLMFIDNCNVILRAIM 1165

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
            EKCGDA+DCV+T EA +LA  LDE  + NLP+PG+VDFINGGPPCQGFSGMNRF+QSTWS
Sbjct: 1166 EKCGDADDCVATDEAVKLATGLDEEKLKNLPMPGEVDFINGGPPCQGFSGMNRFSQSTWS 1225

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
            KVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA
Sbjct: 1226 KVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1285

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
            GA+GV QSRKRAFIWAASP +TLPEWPEPMHVFA+PELKI +     Y+AVRST+ GAPF
Sbjct: 1286 GAYGVPQSRKRAFIWAASPKETLPEWPEPMHVFASPELKITMPGGVHYAAVRSTSGGAPF 1345

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
            R++TVRDTIGDLP V NGASK  ++Y ++PVSWFQK IRGNM  L DHISKEMNELN IR
Sbjct: 1346 RSITVRDTIGDLPPVPNGASKPTIKYGSEPVSWFQKLIRGNMFALNDHISKEMNELNFIR 1405

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
            CQ+IPK PGADWHDLPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT
Sbjct: 1406 CQRIPKHPGADWHDLPDEKVKLSTGQIVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1465

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            SITDPQPMGKVGMCFH DQDRI+TVRECARSQGF D Y F G+IQ++H+QIGNAVPP LA
Sbjct: 1466 SITDPQPMGKVGMCFHSDQDRIITVRECARSQGFLDGYHFSGNIQNRHKQIGNAVPPPLA 1525

Query: 1542 FALGRKLKEAVESKRST 1558
            + LG KLKEAV++K S+
Sbjct: 1526 YVLGLKLKEAVDAKSSS 1542


>gi|297792161|ref|XP_002863965.1| hypothetical protein ARALYDRAFT_331330 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309800|gb|EFH40224.1| hypothetical protein ARALYDRAFT_331330 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1532

 Score = 1887 bits (4889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 939/1495 (62%), Positives = 1154/1495 (77%), Gaps = 31/1495 (2%)

Query: 68   CTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGD---RPNRRLNDFILHDEN 124
            CT+FKEKSVR+ EKS  +E KK    D+E +A+ LT+  D D   RP RRLNDF+L D +
Sbjct: 37   CTNFKEKSVRVCEKSATIEVKKQLAVDEEFLALRLTS-LDTDVDARPTRRLNDFVLFDSD 95

Query: 125  GLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWL 184
            G+ QP+EMLEI+D+F+SG ILP    +D+EKEKGVRC  FGR+E+WSISGYEDGSPVIW+
Sbjct: 96   GVLQPVEMLEINDIFVSGAILPSDVCTDKEKEKGVRCPSFGRVENWSISGYEDGSPVIWI 155

Query: 185  STDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSM 244
            ST++ADYDC KPA+SY+K Y+ F++KARA + VYKKLSK+SGG+ + S+DELLA V RSM
Sbjct: 156  STELADYDCRKPAASYRKVYDYFYQKARASVAVYKKLSKSSGGDPNTSLDELLAAVARSM 215

Query: 245  SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENF 304
             G+K F  G +I+DFV+SQG+FI+NQL GLDET+KK++  + E+PVLVAL+E+S K +  
Sbjct: 216  GGNKYFSSGAAIQDFVLSQGDFIYNQLAGLDETAKKHETSYVEIPVLVALREKSGKIDMA 275

Query: 305  VQVNAASLGGNLAIG--SKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQS-KK 361
            +Q+      G L I   S+V D +  +    S       DED + A++LQ+EE  +S ++
Sbjct: 276  LQMEGKPSNGVLRIDGVSEVADSEDMI----SDQLVDGADEDRRYAKVLQDEEYRKSMQR 331

Query: 362  QKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPR 421
             +K   S S  NKFYIKINEDEIA+DYP P +Y+ S+EE DEL+ YD+ Y+  D + LPR
Sbjct: 332  SRKNTSSASASNKFYIKINEDEIASDYPLPSYYKNSKEETDELILYDASYE-VDAEDLPR 390

Query: 422  RMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGV 481
            RMLH+W+LYNSDSR ISLELLPMK C+DIDVTIFGSG +  D+GS   LD   S      
Sbjct: 391  RMLHNWALYNSDSRFISLELLPMKHCDDIDVTIFGSGVVTDDDGSWTSLDDPDSG----- 445

Query: 482  SGAQDAGGFPIYLSSIKEWMIEFGSS-MIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTA 540
            S + D  G  I+LS IKEW+IEFG   +I I+IRTD+AWYRLGKPSK YAPWY+PVLKTA
Sbjct: 446  SQSHDPDGMSIFLSQIKEWVIEFGGDDIIAITIRTDVAWYRLGKPSKLYAPWYKPVLKTA 505

Query: 541  RVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQL 600
            RV ISI+ +L  ++R++RLSF DV KRLS ++K+  +YISSDP AVERY+VVHGQI+LQL
Sbjct: 506  RVGISILALLSGESRIARLSFADVTKRLSGLQKNDRAYISSDPLAVERYLVVHGQIILQL 565

Query: 601  FAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKV 660
            FA YP++ IK+C F IGL  K+E+RHHTKW++KKKK+   E+NLNPRA M PVV SKRK 
Sbjct: 566  FAVYPNDNIKRCPFNIGLASKLEDRHHTKWIIKKKKILLKELNLNPRAGMAPVV-SKRKA 624

Query: 661  MQATTTRLINRIWGEYYSNYSPED-----GKEETACEANEDEEVEEQGENEEDDTEEEKL 715
            MQATTTRL+NRIWGE+YSNYSPED     G E    E  E+ E  E+    E++   E  
Sbjct: 625  MQATTTRLVNRIWGEFYSNYSPEDSLQAIGAENGEDEVEEEGENGEEEVEGENEDVTEDT 684

Query: 716  ISEERQISCS-VAVQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLV 772
            + E  ++  S    +I+  S K+EI W+GE + K+  G  LY++A+V GE+V++G AV +
Sbjct: 685  VPEPVEVQKSHTPKKIRGSSGKREIKWDGESLGKTSAGEPLYRQALVGGEIVAVGGAVTL 744

Query: 773  EVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLEL 832
            EVD+ +++P IYFVEYMFE+T  CK+ HG  +QRGS TVLGN ANERE+FL N+C  ++L
Sbjct: 745  EVDDPEEIPAIYFVEYMFESTDHCKMLHGRFLQRGSTTVLGNAANERELFLTNECMTVQL 804

Query: 833  QDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
            +DIK     +IRS PWGHQ+RK+   ADK+DRARA ERK K LPTEYYCKSLY PERG F
Sbjct: 805  KDIKGIASFEIRSRPWGHQYRKENIIADKLDRARALERKAKDLPTEYYCKSLYSPERGGF 864

Query: 893  FILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFT 951
            F LP+  +G   G C++C  +E EKE+ T K++ SKT F     E+ V D+ Y++P    
Sbjct: 865  FSLPLSDIGRSSGFCNSCKIREDEKERSTIKLNVSKTGFFSNGIEFSVEDFAYVNPDSID 924

Query: 952  WDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKA 1011
              +    +FK+GRN+GL+ YVVCQLLEI VPKE ++A++ S  VKVRRF+RP+D+S EKA
Sbjct: 925  GKEGSKTSFKSGRNIGLRAYVVCQLLEI-VPKESRKADLGSFDVKVRRFYRPEDVSVEKA 983

Query: 1012 YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSL 1071
            Y SDI+E+YYS++T ++   A+ GKCEVRKK+D+P C    I  HIFFC+   D SKGSL
Sbjct: 984  YASDIQELYYSQDTDVLPPGALEGKCEVRKKSDMPLCREYPISDHIFFCDLFFDSSKGSL 1043

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            KQLPA++KL++S+  +  +   R+KKGK +E E   E+ K     +E  LATLDIFAGCG
Sbjct: 1044 KQLPANMKLKFST--IKDDTLLRKKKGKGVESETVSEIVKPDEPPKEIRLATLDIFAGCG 1101

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
            GLS+GL+++G+S TKWAIEYEEPAG+AFK NHPES + ++NCNVILRA+MEK GD +DCV
Sbjct: 1102 GLSQGLKKAGVSDTKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAIMEKGGDQDDCV 1161

Query: 1192 STSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1251
            ST+EA ELAA L E+  + LPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMILAF
Sbjct: 1162 STTEANELAAKLAEDQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAF 1221

Query: 1252 LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
            LSFADYF+PRYFLLENVR FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+GVSQSRK
Sbjct: 1222 LSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQSRK 1281

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIG 1371
            RAFIWAA+P + LPEWPEPMHVF  P+LKI LS    Y+AVRSTA GAPFR +TVRDTIG
Sbjct: 1282 RAFIWAAAPEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIG 1341

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            DLP+V NG S T  EY++  VSWFQK IRGNM  LTDHI K MN+LNLIRCQ IPKRPGA
Sbjct: 1342 DLPSVENGESMTNKEYKDVAVSWFQKEIRGNMIALTDHICKAMNQLNLIRCQHIPKRPGA 1401

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
            DWHDLP+EKVKLS G V ++IPWCLPNTAKRHN WKGLFGRLDW+GNFPTSITDPQPMGK
Sbjct: 1402 DWHDLPNEKVKLSNGHVEEMIPWCLPNTAKRHNGWKGLFGRLDWQGNFPTSITDPQPMGK 1461

Query: 1492 VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGR 1546
            VGMCFHPDQDRILTVRECARSQGFPDSY+F G+I HKHRQIGNAVPP LAFALGR
Sbjct: 1462 VGMCFHPDQDRILTVRECARSQGFPDSYEFAGNIIHKHRQIGNAVPPPLAFALGR 1516


>gi|116062014|dbj|BAF34635.1| DNA methyltransferase 1a [Brassica rapa]
          Length = 1528

 Score = 1873 bits (4851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 941/1548 (60%), Positives = 1167/1548 (75%), Gaps = 48/1548 (3%)

Query: 26   KKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLV 85
            +K++P   +PE K  + G+         D      RPKR AACT+FKEKSVRISEKS  V
Sbjct: 11   QKKRP---LPEIKSDSDGE---------DLSTRHTRPKRAAACTNFKEKSVRISEKSTTV 58

Query: 86   EAKKDQYADDEIVAVGLTARQDGD----RPNRRLNDFILHDENGLPQPLEMLEIDDLFIS 141
            E K+ Q  +DE+VA+  TA   G     R  RRL DFILHDE G+PQP+ M+EI D+F++
Sbjct: 59   ETKQHQTVEDEVVALHFTASPQGGGDEPRQTRRLTDFILHDEYGVPQPVAMVEIGDIFVT 118

Query: 142  GLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYK 201
            G+ILP  E  D+EK KGV+C+GFGR+E+WSISGY+DG PV+W ST++ADYDC KPA+SYK
Sbjct: 119  GVILPSGECDDKEKGKGVKCDGFGRVENWSISGYDDGYPVVWFSTELADYDCGKPATSYK 178

Query: 202  KYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMS-GSKCFRGG-VSIKDF 259
            K Y+ F++KA A +EVYK+++K++GG+S  S+DELL  V RSMS  SKCF    + I++F
Sbjct: 179  KMYDYFYQKAFASVEVYKRVAKSAGGDSGVSLDELLVAVSRSMSLESKCFSTDFLVIRNF 238

Query: 260  VISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKREN--FVQVNAASLGGNLA 317
            +I QGEFI+NQL GLDET+KK++  FAE+PVLVAL++E+S+ +N   +Q+      G L 
Sbjct: 239  LIRQGEFIYNQLAGLDETAKKDEASFAEIPVLVALRDENSRLDNGAVIQMEGRPSNGVLR 298

Query: 318  IGSKVGDGDGKMDQYGSSTCPADE---DEDAKLARLLQEEELWQS-KKQKKTQGSTSGMN 373
            I       DG  +        +D+   DED + AR++Q+EE  ++ ++ K+  G+    N
Sbjct: 299  I-------DGVSEAAKCEALTSDQEMVDEDQRYARIMQDEEDRKTMQRPKRKNGAALASN 351

Query: 374  KFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSD 433
            K Y+K  EDEIA DYP P +Y+  ++E DEL+  D DY+  + + LPRRMLH+W+LYNSD
Sbjct: 352  KGYVKTTEDEIAGDYPLPAYYKNFKDEADELIVAD-DYE-VNYEDLPRRMLHNWALYNSD 409

Query: 434  SRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIY 493
            SR ISLELLPMKPC DIDVTIFGSG M  D G  F LD D    TSG    +D  G P++
Sbjct: 410  SRFISLELLPMKPCADIDVTIFGSGLMAEDGGFWFGLD-DPDTSTSG-QPKKDLEGMPVF 467

Query: 494  LSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQ 553
            LS IKEWMIE+G S I ISIRTD+AWYRLGKPSKQYAPW+EPVLKTARV I I  +L+EQ
Sbjct: 468  LSQIKEWMIEWGCSTISISIRTDVAWYRLGKPSKQYAPWFEPVLKTARVTIGIFGLLEEQ 527

Query: 554  TRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCA 613
            TR+S+LSF DV KR+SE +K+  ++ISSD  AV R++V HGQI+LQ+F+E+P + I++C+
Sbjct: 528  TRMSKLSFEDVTKRVSEFQKNDKAFISSDRLAVNRFLVGHGQIILQMFSEFPKKDIQRCS 587

Query: 614  FIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIW 673
            F+  L +K  ERH+T+W +KKKK+   ++N NPRA M PVV SKRK MQATTTRLINRIW
Sbjct: 588  FVSDLARKRAERHNTRWTIKKKKIL-FKVNCNPRAGMAPVV-SKRKAMQATTTRLINRIW 645

Query: 674  GEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSR 733
            GE+YSNYSPE+  +    E  E+E  EE    E+D  E      EE + S +   +I+  
Sbjct: 646  GEFYSNYSPEEPVQAVGAENEEEEVEEEGEIEEDDAEETVPEPVEEVEKSHTPLKKIRGV 705

Query: 734  STKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFE 791
            S K E +W GE + K+  G  LY++A+V  E+V++G AV++E D  +   VIYFVEYMFE
Sbjct: 706  SGKTESSWSGESLGKTSAGEPLYRQALVGEEIVAVGGAVVLEDDGNE---VIYFVEYMFE 762

Query: 792  ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQ 851
             +  CK+ HG ++QRG  TVLGN ANERE+FL N+C+ + L++IK TV  +IRS PWGHQ
Sbjct: 763  KSNNCKMLHGRLLQRGCDTVLGNAANERELFLTNECKTVSLKEIKGTVSFEIRSRPWGHQ 822

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACG 911
             RK+   ADK+DRARAEERK K LPTEY+CKSLY PERG FF LP++ MG   G+C +C 
Sbjct: 823  FRKENTTADKLDRARAEERKTKDLPTEYFCKSLYSPERGGFFSLPLNDMGCASGTCSSCR 882

Query: 912  TKESEKEKETFKVHS-KTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
             +E E++K   K++S KT F     +Y V DYVY+ P      K     FK+GRN+GL+P
Sbjct: 883  IREDEEKKTEIKLNSSKTGFSCNGVDYSVDDYVYVKPEDIDGSKEANGRFKSGRNIGLRP 942

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFV 1030
            +VVCQ+LEIIV KE ++A   S +VKVRR +RP+D+S EKAY SDI+E+YYSE+T ++  
Sbjct: 943  FVVCQILEIIVLKESRKA---SFEVKVRRLYRPEDVSDEKAYASDIQELYYSEDTDVLQP 999

Query: 1031 EAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSE 1090
            EA+ G+CEVRKK D+P+     I  +IFFCE ++DPSKGSLKQLP +IK +Y++  +  E
Sbjct: 1000 EALEGRCEVRKKIDMPSRREYPISDNIFFCEQIYDPSKGSLKQLPVNIKPKYTT--VKDE 1057

Query: 1091 AASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIE 1150
            A  R++KGK +  E +   +K    S+E  LATLDIFAGCGGLS+GL+Q+G+S+TKWAIE
Sbjct: 1058 ALLRKRKGKGLVTETDSVTDKPEEVSKETRLATLDIFAGCGGLSQGLEQAGVSATKWAIE 1117

Query: 1151 YEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINN 1210
            YEEPAG+AF+ NHPE+ + ++NCNVILRA+MEKCGD ++C+ST EA ELA  LDE+    
Sbjct: 1118 YEEPAGKAFRKNHPETTVFVDNCNVILRAIMEKCGDQDECISTKEANELAEKLDEDQKRT 1177

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRN 1270
            LPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMILAFLSFADYF+PRYFLLENVR 
Sbjct: 1178 LPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFLLENVRT 1237

Query: 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
            FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+GVSQSRKRAFIWAA+P + LPEWPEP
Sbjct: 1238 FVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAAAPDEVLPEWPEP 1297

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
            MHVF  PELKI LS    Y+AVRST  GAPFR +TVRDTIGDLP+V NG S T  EY+  
Sbjct: 1298 MHVFGVPELKISLSKGVHYAAVRSTQYGAPFRPITVRDTIGDLPSVVNGESNTKREYKAQ 1357

Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
            P+SWFQK IRG+   LTDHI KEMNELNLIRC+KIPKRPGADW DLP+EKV LS GQVVD
Sbjct: 1358 PISWFQKEIRGDNIALTDHICKEMNELNLIRCKKIPKRPGADWRDLPEEKVTLSKGQVVD 1417

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRI+TVRECA
Sbjct: 1418 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIITVRECA 1477

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            RSQGFPDSY F G+I HKHRQIGNAVPP LAFALGRKLKEAV+ K+ T
Sbjct: 1478 RSQGFPDSYVFQGNIIHKHRQIGNAVPPPLAFALGRKLKEAVQLKKVT 1525


>gi|15239810|ref|NP_199727.1| DNA (cytosine-5)-methyltransferase 1 [Arabidopsis thaliana]
 gi|462650|sp|P34881.1|DNMT1_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase 1; AltName: Full=DNA
            methyltransferase 01; AltName: Full=DNA methyltransferase
            2; AltName: Full=DNA methyltransferase AthI; Short=DNA
            Metase AthI; Short=M.AthI; AltName: Full=DNA
            methyltransferase DDM2; AltName: Full=Protein DECREASED
            DNA METHYLATION 2
 gi|304107|gb|AAA32829.1| cytosine-5 methyltransferase [Arabidopsis thaliana]
 gi|10177145|dbj|BAB10334.1| DNA (cytosine-5)-methyltransferase [Arabidopsis thaliana]
 gi|332008394|gb|AED95777.1| DNA (cytosine-5)-methyltransferase 1 [Arabidopsis thaliana]
          Length = 1534

 Score = 1867 bits (4836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 949/1509 (62%), Positives = 1151/1509 (76%), Gaps = 35/1509 (2%)

Query: 68   CTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDG--DRPNRRLNDFILHDENG 125
            CT FKEKS+R+ EKS  +E KK Q  ++E +A+ LTA +    DRP RRLNDF+L D +G
Sbjct: 37   CTSFKEKSIRVCEKSATIEVKKQQIVEEEFLALRLTALETDVEDRPTRRLNDFVLFDSDG 96

Query: 126  LPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLS 185
            +PQPLEMLEI D+F+SG ILP    +D+EKEKGVRC  FGR+E WSISGYEDGSPVIW+S
Sbjct: 97   VPQPLEMLEIHDIFVSGAILPSDVCTDKEKEKGVRCTSFGRVEHWSISGYEDGSPVIWIS 156

Query: 186  TDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMS 245
            T++ADYDC KPA+SY+K Y+ F+EKARA + VYKKLSK+SGG+ D  ++ELLA VVRSMS
Sbjct: 157  TELADYDCRKPAASYRKVYDYFYEKARASVAVYKKLSKSSGGDPDIGLEELLAAVVRSMS 216

Query: 246  -GSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENF 304
             GSK F  G +I DFVISQG+FI+NQL GLDET+KK++  + E+PVLVAL+E+SSK +  
Sbjct: 217  SGSKYFSSGAAIIDFVISQGDFIYNQLAGLDETAKKHESSYVEIPVLVALREKSSKIDKP 276

Query: 305  VQV-NAASLGGNLAIGSKVGDGDG-KMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQ 362
            +Q     S G  +   S+V + +    DQ    T     D+D + A LLQ+EE  +S +Q
Sbjct: 277  LQRERNPSNGVRIKEVSQVAESEALTSDQLVDGT-----DDDRRYAILLQDEENRKSMQQ 331

Query: 363  -KKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPR 421
             +K   S S  N FYIKINEDEIANDYP P +Y+ SEEE DEL+ YD+ Y+    + LP 
Sbjct: 332  PRKNSSSGSASNMFYIKINEDEIANDYPLPSYYKTSEEETDELILYDASYE-VQSEHLPH 390

Query: 422  RMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCL-DTDSSQCTSG 480
            RMLH+W+LYNSD R ISLELLPMK C+DIDV IFGSG +  D GS   L D DS      
Sbjct: 391  RMLHNWALYNSDLRFISLELLPMKQCDDIDVNIFGSGVVTDDNGSWISLNDPDSG----- 445

Query: 481  VSGAQDAGGFPIYLSSIKEWMIEFGSS-MIFISIRTDLAWYRLGKPSKQYAPWYEPVLKT 539
             S + D  G  I+LS IKEWMIEFGS  +I ISIRTD+AWYRLGKPSK YAPW++PVLKT
Sbjct: 446  -SQSHDPDGMCIFLSQIKEWMIEFGSDDIISISIRTDVAWYRLGKPSKLYAPWWKPVLKT 504

Query: 540  ARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQ 599
            ARV ISI+T L+ ++RV+RLSF DV KRLS ++ +  +YISSDP AVERY+VVHGQI+LQ
Sbjct: 505  ARVGISILTFLRVESRVARLSFADVTKRLSGLQANDKAYISSDPLAVERYLVVHGQIILQ 564

Query: 600  LFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRK 659
            LFA YPD+ +K+C F++GL  K+E+RHHTKW++KKKK+   E+NLNPRA M PV  SKRK
Sbjct: 565  LFAVYPDDNVKRCPFVVGLASKLEDRHHTKWIIKKKKISLKELNLNPRAGMAPVA-SKRK 623

Query: 660  VMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEE 719
             MQATTTRL+NRIWGE+YSNYSPED  + TA E  EDE  EE G  EE+  EE +    E
Sbjct: 624  AMQATTTRLVNRIWGEFYSNYSPEDPLQATAAENGEDEVEEEGGNGEEEVEEEGENGLTE 683

Query: 720  RQISCSVAVQ-------IKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAV 770
              +   V VQ       I+  S K+EI W+GE + K+  G  LY++A+V GE+V++G AV
Sbjct: 684  DTVPEPVEVQKPHTPKKIRGSSGKREIKWDGESLGKTSAGEPLYQQALVGGEMVAVGGAV 743

Query: 771  LVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDL 830
             +EVD+ D++P IYFVEYMFE+T  CK+ HG  +QRGS TVLGN ANERE+FL N+C   
Sbjct: 744  TLEVDDPDEMPAIYFVEYMFESTDHCKMLHGRFLQRGSMTVLGNAANERELFLTNECMTT 803

Query: 831  ELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERG 890
            +L+DIK     +IRS PWGHQ+RK    ADK+D ARA ERK K LPTEYYCKSLY PERG
Sbjct: 804  QLKDIKGVASFEIRSRPWGHQYRKKNITADKLDWARALERKVKDLPTEYYCKSLYSPERG 863

Query: 891  AFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHH 949
             FF LP+  +G   G C +C  +E E+++ T K++ SKT F     EY V D+VY++P  
Sbjct: 864  GFFSLPLSDIGRSSGFCTSCKIREDEEKRSTIKLNVSKTGFFINGIEYSVEDFVYVNPDS 923

Query: 950  FTWDKAEGET-FKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
                K   +T FK+GRN+GL+ YVVCQLLEI VPKE ++A++ S  VKVRRF+RP+D+SA
Sbjct: 924  IGGLKEGSKTSFKSGRNIGLRAYVVCQLLEI-VPKESRKADLGSFDVKVRRFYRPEDVSA 982

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
            EKAY SDI+E+Y+S++T ++   A+ GKCEVRKK+D+P      I  HIFFC+   D SK
Sbjct: 983  EKAYASDIQELYFSQDTVVLPPGALEGKCEVRKKSDMPLSREYPISDHIFFCDLFFDTSK 1042

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            GSLKQLPA++K ++S+  +  +   R+KKGK +E E E E+ K     +E  LATLDIFA
Sbjct: 1043 GSLKQLPANMKPKFST--IKDDTLLRKKKGKGVESEIESEIVKPVEPPKEIRLATLDIFA 1100

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLS GL+++G+S  KWAIEYEEPAG+AFK NHPES + ++NCNVILRA+MEK GD +
Sbjct: 1101 GCGGLSHGLKKAGVSDAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAIMEKGGDQD 1160

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DCVST+EA ELAA L E   + LPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMI
Sbjct: 1161 DCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMI 1220

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFADYF+PRYFLLENVR FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+GVSQ
Sbjct: 1221 LAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQ 1280

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P + LPEWPEPMHVF  P+LKI LS    Y+AVRSTA GAPFR +TVRD
Sbjct: 1281 SRKRAFIWAAAPEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRD 1340

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP+V NG S+T  EY+   VSWFQK IRGN   LTDHI K MNELNLIRC+ IP R
Sbjct: 1341 TIGDLPSVENGDSRTNKEYKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTR 1400

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            PGADWHDLP  KV LS G+V ++IP+CLPNTA+RHN WKGL+GRLDW+GNFPTS+TDPQP
Sbjct: 1401 PGADWHDLPKRKVTLSDGRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQP 1460

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGKVGMCFHP+Q RILTVRECARSQGFPDSY+F G+I HKHRQIGNAVPP LAFALGRKL
Sbjct: 1461 MGKVGMCFHPEQHRILTVRECARSQGFPDSYEFAGNINHKHRQIGNAVPPPLAFALGRKL 1520

Query: 1549 KEAVESKRS 1557
            KEA+  K+S
Sbjct: 1521 KEALHLKKS 1529


>gi|37201980|tpg|DAA01513.1| TPA_exp: putative cytosine-5 DNA methyltransferase [Oryza sativa
            (japonica cultivar-group)]
          Length = 1497

 Score = 1839 bits (4763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1519 (59%), Positives = 1167/1519 (76%), Gaps = 36/1519 (2%)

Query: 44   QKEKMKKLSQ-DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGL 102
            +KEKM  + + DS    KRP+R AAC+DFKEKSVR+S+KS +V    ++  ++E+ AV L
Sbjct: 8    RKEKMNGVGKGDSRAACKRPRRAAACSDFKEKSVRLSDKSSVVATNGNKMEEEEMDAVKL 67

Query: 103  TAR-QDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRC 161
            T    +  RP R+L DFILHD +G  QP EM EIDD FI+ LI+P+ +  +++++KGVRC
Sbjct: 68   TKLGPEVQRPCRKLIDFILHDADGKLQPFEMSEIDDFFITALIMPMDDDLEKDRQKGVRC 127

Query: 162  EGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKL 221
            EGFGRIE W+ISGY++G+ V+W+ST++ADY+C+KPA +YK YY+ F+EKA+ C+EVY+KL
Sbjct: 128  EGFGRIEDWAISGYDEGTAVVWVSTEVADYECVKPAGNYKSYYDHFYEKAQVCVEVYRKL 187

Query: 222  SKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKN 281
            +++ GGN +  ++ELLA VVRS++  K + G +S KDFVIS GEF++NQLIGLDET+  +
Sbjct: 188  ARSVGGNPNLGLEELLASVVRSINAIKGYSGTLS-KDFVISNGEFVYNQLIGLDETANTD 246

Query: 282  DQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPAD 340
            D+KFA LPVL+AL++    R     V  + L  N++ GS K+ D + K            
Sbjct: 247  DEKFATLPVLLALRDGCKSR-----VEVSKLQPNISNGSLKINDAECK---------EVS 292

Query: 341  EDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEE 400
            ED+D KLARLLQ+EE W+  KQ+  +G+TS  N  YIKI+E EIANDYP P +Y+PS +E
Sbjct: 293  EDDDEKLARLLQQEEEWKMMKQRGKRGTTSQKN-VYIKISEAEIANDYPLPAYYKPSSQE 351

Query: 401  FDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKM 460
             DE + +DS+ DS   D +P R+L++W+LYN+DSRLI LEL+PMK   + D+ +FGSG M
Sbjct: 352  MDEYI-FDSE-DSFYSD-VPVRILNNWALYNADSRLIPLELIPMKAGAENDIVVFGSGFM 408

Query: 461  ISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWY 520
              D+GS  C   +S++ +S  S      G  IYLS IKEW+IEFG SMI I+IRTD+AWY
Sbjct: 409  REDDGS-CCSTAESAKLSSSSSSNHQDAGVSIYLSPIKEWVIEFGGSMICITIRTDVAWY 467

Query: 521  RLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYIS 580
            +L +P+KQYAPW EPVLKTAR+++SIIT+LKEQ+R S+LSF DVIK+++E  K   +++S
Sbjct: 468  KLRQPTKQYAPWCEPVLKTARLSVSIITLLKEQSRASKLSFADVIKKVAEFDKGSPAFVS 527

Query: 581  SDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQK 639
            S+ A VERY+VVHGQI+LQ F+++PDE I++ AF  GL+ KME+R HTK ++KKK +V +
Sbjct: 528  SNVALVERYIVVHGQIILQQFSDFPDETIRRSAFATGLLMKMEQRRHTKLVMKKKVQVMR 587

Query: 640  SEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEV 699
             E NLNP A+MGP   S+RKVM+ATTTRLINRIW +YY+++ PED K+    EA E ++ 
Sbjct: 588  GE-NLNPSATMGPA--SRRKVMRATTTRLINRIWSDYYTHHFPEDSKDADVNEAKEIDDE 644

Query: 700  EEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKA 757
             E+ E+E+ + E +       +   S   +     T KEI WEGE + K  SG ALYK A
Sbjct: 645  LEENEDEDAEEEAQIEEENVSKTPPSTRSRKLVSQTCKEIRWEGEAIGKTPSGEALYKCA 704

Query: 758  IVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTAN 817
             V    ++LG  V +E D+  +L V+ FVEYMF+   G K+ HG ++Q+GS TVLGN AN
Sbjct: 705  YVRELRINLGRTVALE-DDSGEL-VMCFVEYMFQKLNGAKMVHGRLLQKGSETVLGNAAN 762

Query: 818  EREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPT 877
            ER++FL N+C + EL+DIK+ + V+++S+PWGH++RK+ A AD+++RA+AE+RKKKGLP 
Sbjct: 763  ERDLFLTNECLEFELEDIKELMSVNLQSLPWGHKYRKENAEADRIERAKAEDRKKKGLPM 822

Query: 878  EYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEY 937
            EY CKSLYWPE+GAFF LP D +GLG G C +C  KE + ++   ++ SK SF+Y    Y
Sbjct: 823  EYLCKSLYWPEKGAFFSLPHDKLGLGNGFCSSCQQKEPDCDE--LQILSKNSFIYRNITY 880

Query: 938  FVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKV 997
             V+DY+YI P  F+ ++    TFK GRNVGLKPYVVC LL++  P   ++    ST++ V
Sbjct: 881  NVNDYLYIRPEFFSQEEDRA-TFKGGRNVGLKPYVVCHLLDVHEPAGSRKIHPASTKISV 939

Query: 998  RRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHI 1057
            RRF+RPDDIS+ KAY SDIREVYYSE    + V+ I GKCEV+KK DI   + P + +H 
Sbjct: 940  RRFYRPDDISSAKAYVSDIREVYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVEHE 999

Query: 1058 FFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQ 1117
            FFCEH +DP+ G+LKQLP ++KL   S    +  A ++ KGK I   D+++ +K    S+
Sbjct: 1000 FFCEHFYDPATGALKQLPPNVKLM--SVQQKATGALKKNKGKQICESDQVDSDKCTKVSK 1057

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            EN LATLDIFAGCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNVIL
Sbjct: 1058 ENRLATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVIL 1117

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
            +A+M+KCGDA+DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRFNQ
Sbjct: 1118 KAIMDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQ 1177

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
            S WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFG
Sbjct: 1178 SPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFG 1237

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            ILEAG FGV+QSRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +STA 
Sbjct: 1238 ILEAGTFGVAQSRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAG 1297

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
            GAPFRA+TVRDTIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DHISKEMNEL
Sbjct: 1298 GAPFRAITVRDTIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMNEL 1357

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
            NLIRCQ+IPKRPG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEG
Sbjct: 1358 NLIRCQRIPKRPGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEG 1417

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            NFPTS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNAVP
Sbjct: 1418 NFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVP 1477

Query: 1538 PTLAFALGRKLKEAVESKR 1556
            P LAFALGRKLKEAV++KR
Sbjct: 1478 PPLAFALGRKLKEAVDAKR 1496


>gi|222636555|gb|EEE66687.1| hypothetical protein OsJ_23341 [Oryza sativa Japonica Group]
          Length = 1555

 Score = 1838 bits (4762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1508 (60%), Positives = 1160/1508 (76%), Gaps = 35/1508 (2%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPN 112
            DS    KRP+R AAC+DFKEKSVR+S+KS +V    ++  ++E+ AV LT    +  RP 
Sbjct: 77   DSRAACKRPRRAAACSDFKEKSVRLSDKSSVVATNGNKMEEEEMDAVKLTKLGPEVQRPC 136

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD +G  QP EM EIDD FI+ LI+P+ +  +++++KGVRCEGFGRIE W+I
Sbjct: 137  RKLIDFILHDADGKLQPFEMSEIDDFFITALIMPMDDDLEKDRQKGVRCEGFGRIEDWAI 196

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+ V+W+ST++ADY+C+KPA +YK YY+ F+EKA+ C+EVY+KL+++ GGN +  
Sbjct: 197  SGYDEGTAVVWVSTEVADYECVKPAGNYKSYYDHFYEKAQVCVEVYRKLARSVGGNPNLG 256

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            ++ELLA VVRS++  K + G +S KDFVIS GEF++NQLIGLDET+  +D+KFA LPVL+
Sbjct: 257  LEELLASVVRSINAIKGYSGTLS-KDFVISNGEFVYNQLIGLDETANTDDEKFATLPVLL 315

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            AL++    R     V  + L  N++ GS K+ D + K            ED+D KLARLL
Sbjct: 316  ALRDGCKSR-----VEVSKLQPNISNGSLKINDAECK---------EVSEDDDEKLARLL 361

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  KQ+  +G+TS  N  YIKI+E EIANDYP P +Y+PS +E DE + +DS+ 
Sbjct: 362  QQEEEWKMMKQRGKRGTTSQKN-VYIKISEAEIANDYPLPAYYKPSSQEMDEYI-FDSE- 418

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
            DS   D +P R+L++W+LYN+DSRLI LEL+PMK   + D+ +FGSG M  D+GS  C  
Sbjct: 419  DSFYSD-VPVRILNNWALYNADSRLIPLELIPMKAGAENDIVVFGSGFMREDDGS-CCST 476

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
             +S++ +S  S      G  IYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 477  AESAKLSSSSSSNHQDAGVSIYLSPIKEWVIEFGGSMICITIRTDVAWYKLRQPTKQYAP 536

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+++SIIT+LKEQ+R S+LSF DVIK+++E  K   +++SS+ A VERY+V
Sbjct: 537  WCEPVLKTARLSVSIITLLKEQSRASKLSFADVIKKVAEFDKGSPAFVSSNVALVERYIV 596

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ F+++PDE I++ AF  GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 597  VHGQIILQQFSDFPDETIRRSAFATGLLMKMEQRRHTKLVMKKKVQVMRGE-NLNPSATM 655

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDT 710
            GP   S+RKVM+ATTTRLINRIW +YY+++ PED K+    EA E ++  E+ E+E+ + 
Sbjct: 656  GPA--SRRKVMRATTTRLINRIWSDYYTHHFPEDSKDADVNEAKEIDDELEENEDEDAEE 713

Query: 711  EEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGS 768
            E +       +   S   +     T KEI WEGE + K  SG ALYK A V    ++LG 
Sbjct: 714  EAQIEEENVSKTPPSTRSRKLVSQTCKEIRWEGEAIGKTPSGEALYKCAYVRELRINLGR 773

Query: 769  AVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCR 828
             V +E D+  +L V+ FVEYMF+   G K+ HG ++Q+GS TVLGN ANER++FL N+C 
Sbjct: 774  TVALE-DDSGEL-VMCFVEYMFQKLNGAKMVHGRLLQKGSETVLGNAANERDLFLTNECL 831

Query: 829  DLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPE 888
            + EL+DIK+ + V+++S+PWGH++RK+ A AD+++RA+AE+RKKKGLP EY CKSLYWPE
Sbjct: 832  EFELEDIKELMSVNLQSLPWGHKYRKENAEADRIERAKAEDRKKKGLPMEYLCKSLYWPE 891

Query: 889  RGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPH 948
            +GAFF LP D +GLG G C +C  KE + ++   ++ SK SF+Y    Y V+DY+YI P 
Sbjct: 892  KGAFFSLPHDKLGLGNGFCSSCQQKEPDCDE--LQILSKNSFIYRNITYNVNDYLYIRPD 949

Query: 949  HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
             F+ ++    TFK GRNVGLKPYVVC LL++  P   ++    ST++ VRRF+RPDDIS+
Sbjct: 950  FFSQEEDRA-TFKGGRNVGLKPYVVCHLLDVHEPAGSRKIHPASTKISVRRFYRPDDISS 1008

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
             KAY SDIREVYYSE    + V+ I GKCEV+KK DI   + P + +H FFCEH +DP+ 
Sbjct: 1009 AKAYVSDIREVYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVEHEFFCEHFYDPAT 1068

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            G+LKQLP ++KL   S    +  A ++ KGK I   D+++ +K    S+EN LATLDIFA
Sbjct: 1069 GALKQLPPNVKLM--SVQQKATGALKKNKGKQICESDQVDSDKCTKVSKENRLATLDIFA 1126

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNVIL+A+M+KCGDA+
Sbjct: 1127 GCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDAD 1186

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMI
Sbjct: 1187 DCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMI 1246

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILEAG FGV+Q
Sbjct: 1247 LAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQ 1306

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +STA GAPFRA+TVRD
Sbjct: 1307 SRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRD 1366

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DHISKEMNELNLIRCQ+IPKR
Sbjct: 1367 TIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKR 1426

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            PG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQP
Sbjct: 1427 PGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQP 1486

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNAVPP LAFALGRKL
Sbjct: 1487 MGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKL 1546

Query: 1549 KEAVESKR 1556
            KEAV++KR
Sbjct: 1547 KEAVDAKR 1554


>gi|171196104|dbj|BAG15930.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
          Length = 1486

 Score = 1837 bits (4757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1508 (60%), Positives = 1160/1508 (76%), Gaps = 35/1508 (2%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPN 112
            DS    KRP+R AAC+DFKEKSVR+S+KS +V    ++  ++E+ AV LT    +  RP 
Sbjct: 8    DSRAACKRPRRAAACSDFKEKSVRLSDKSSVVATNGNKMEEEEMDAVKLTKLGPEVQRPC 67

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD +G  QP EM EIDD FI+ LI+P+ +  +++++KGVRCEGFGRIE W+I
Sbjct: 68   RKLIDFILHDADGKLQPFEMSEIDDFFITALIMPMDDDLEKDRQKGVRCEGFGRIEDWAI 127

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+ V+W+ST++ADY+C+KPA +YK YY+ F+EKA+ C+EVY+KL+++ GGN +  
Sbjct: 128  SGYDEGTAVVWVSTEVADYECVKPAGNYKSYYDHFYEKAQVCVEVYRKLARSVGGNPNLG 187

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            ++ELLA VVRS++  K + G +S KDFVIS GEF++NQLIGLDET+  +D+KFA LPVL+
Sbjct: 188  LEELLASVVRSINAIKGYSGTLS-KDFVISNGEFVYNQLIGLDETANTDDEKFATLPVLL 246

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            AL++    R     V  + L  N++ GS K+ D + K            ED+D KLARLL
Sbjct: 247  ALRDGCKSR-----VEVSKLQPNISNGSLKINDAECK---------EVSEDDDEKLARLL 292

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  KQ+  +G+TS  N  YIKI+E EIANDYP P +Y+PS +E DE + +DS+ 
Sbjct: 293  QQEEEWKMMKQRGKRGTTSQKN-VYIKISEAEIANDYPLPAYYKPSSQEMDEYI-FDSE- 349

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
            DS   D +P R+L++W+LYN+DSRLI LEL+PMK   + D+ +FGSG M  D+GS  C  
Sbjct: 350  DSFYSD-VPVRILNNWALYNADSRLIPLELIPMKAGAENDIVVFGSGFMREDDGS-CCST 407

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
             +S++ +S  S      G  IYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 408  AESAKLSSSSSSNHQDAGVSIYLSPIKEWVIEFGGSMICITIRTDVAWYKLRQPTKQYAP 467

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+++SIIT+LKEQ+R S+LSF DVIK+++E  K   +++SS+ A VERY+V
Sbjct: 468  WCEPVLKTARLSVSIITLLKEQSRASKLSFADVIKKVAEFDKGSPAFVSSNVALVERYIV 527

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ F+++PDE I++ AF  GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 528  VHGQIILQQFSDFPDETIRRSAFATGLLMKMEQRRHTKLVMKKKVQVMRGE-NLNPSATM 586

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDT 710
            GP   S+RKVM+ATTTRLINRIW +YY+++ PED K+    EA E ++  E+ E+E+ + 
Sbjct: 587  GPA--SRRKVMRATTTRLINRIWSDYYTHHFPEDSKDADVNEAKEIDDELEENEDEDAEE 644

Query: 711  EEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGS 768
            E +       +   S   +     T KEI WEGE + K  SG ALYK A V    ++LG 
Sbjct: 645  EAQIEEENVSKTPPSTRSRKLVSQTCKEIRWEGEAIGKTPSGEALYKCAYVRELRINLGR 704

Query: 769  AVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCR 828
             V +E D+  +L V+ FVEYMF+   G K+ HG ++Q+GS TVLGN ANER++FL N+C 
Sbjct: 705  TVALE-DDSGEL-VMCFVEYMFQKLNGAKMVHGRLLQKGSETVLGNAANERDLFLTNECL 762

Query: 829  DLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPE 888
            + EL+DIK+ + V+++S+PWGH++RK+ A AD+++RA+AE+RKKKGLP EY CKSLYWPE
Sbjct: 763  EFELEDIKELMSVNLQSLPWGHKYRKENAEADRIERAKAEDRKKKGLPMEYLCKSLYWPE 822

Query: 889  RGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPH 948
            +GAFF LP D +GLG G C +C  KE + ++   ++ SK SF+Y    Y V+DY+YI P 
Sbjct: 823  KGAFFSLPHDKLGLGNGFCSSCQQKEPDCDE--LQILSKNSFIYRNITYNVNDYLYIRPD 880

Query: 949  HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
             F+ ++    TFK GRNVGLKPYVVC LL++  P   ++    ST++ VRRF+RPDDIS+
Sbjct: 881  FFSQEEDRA-TFKGGRNVGLKPYVVCHLLDVHEPAGSRKIHPASTKISVRRFYRPDDISS 939

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
             KAY SDIREVYYSE    + V+ I GKCEV+KK DI   + P + +H FFCEH +DP+ 
Sbjct: 940  AKAYVSDIREVYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVEHEFFCEHFYDPAT 999

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            G+LKQLP ++KL   S    +  A ++ KGK I   D+++ +K    S+EN LATLDIFA
Sbjct: 1000 GALKQLPPNVKLM--SVQQKATGALKKNKGKQICESDQVDSDKCTKVSKENRLATLDIFA 1057

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNVIL+A+M+KCGDA+
Sbjct: 1058 GCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDAD 1117

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMI
Sbjct: 1118 DCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMI 1177

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILEAG FGV+Q
Sbjct: 1178 LAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQ 1237

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +STA GAPFRA+TVRD
Sbjct: 1238 SRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRD 1297

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DHISKEMNELNLIRCQ+IPKR
Sbjct: 1298 TIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKR 1357

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            PG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQP
Sbjct: 1358 PGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQP 1417

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNAVPP LAFALGRKL
Sbjct: 1418 MGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKL 1477

Query: 1549 KEAVESKR 1556
            KEAV++KR
Sbjct: 1478 KEAVDAKR 1485


>gi|257096314|sp|B1Q3J6.1|DNM1B_ORYSJ RecName: Full=DNA (cytosine-5)-methyltransferase 1B; Short=OsMET1b;
            AltName: Full=DNA methyltransferase 1-2; Short=OsMET1-2
 gi|171196103|dbj|BAG15929.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
          Length = 1529

 Score = 1836 bits (4756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1508 (60%), Positives = 1160/1508 (76%), Gaps = 35/1508 (2%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPN 112
            DS    KRP+R AAC+DFKEKSVR+S+KS +V    ++  ++E+ AV LT    +  RP 
Sbjct: 51   DSRAACKRPRRAAACSDFKEKSVRLSDKSSVVATNGNKMEEEEMDAVKLTKLGPEVQRPC 110

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD +G  QP EM EIDD FI+ LI+P+ +  +++++KGVRCEGFGRIE W+I
Sbjct: 111  RKLIDFILHDADGKLQPFEMSEIDDFFITALIMPMDDDLEKDRQKGVRCEGFGRIEDWAI 170

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+ V+W+ST++ADY+C+KPA +YK YY+ F+EKA+ C+EVY+KL+++ GGN +  
Sbjct: 171  SGYDEGTAVVWVSTEVADYECVKPAGNYKSYYDHFYEKAQVCVEVYRKLARSVGGNPNLG 230

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            ++ELLA VVRS++  K + G +S KDFVIS GEF++NQLIGLDET+  +D+KFA LPVL+
Sbjct: 231  LEELLASVVRSINAIKGYSGTLS-KDFVISNGEFVYNQLIGLDETANTDDEKFATLPVLL 289

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            AL++    R     V  + L  N++ GS K+ D + K            ED+D KLARLL
Sbjct: 290  ALRDGCKSR-----VEVSKLQPNISNGSLKINDAECK---------EVSEDDDEKLARLL 335

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  KQ+  +G+TS  N  YIKI+E EIANDYP P +Y+PS +E DE + +DS+ 
Sbjct: 336  QQEEEWKMMKQRGKRGTTSQKN-VYIKISEAEIANDYPLPAYYKPSSQEMDEYI-FDSE- 392

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
            DS   D +P R+L++W+LYN+DSRLI LEL+PMK   + D+ +FGSG M  D+GS  C  
Sbjct: 393  DSFYSD-VPVRILNNWALYNADSRLIPLELIPMKAGAENDIVVFGSGFMREDDGS-CCST 450

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
             +S++ +S  S      G  IYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 451  AESAKLSSSSSSNHQDAGVSIYLSPIKEWVIEFGGSMICITIRTDVAWYKLRQPTKQYAP 510

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+++SIIT+LKEQ+R S+LSF DVIK+++E  K   +++SS+ A VERY+V
Sbjct: 511  WCEPVLKTARLSVSIITLLKEQSRASKLSFADVIKKVAEFDKGSPAFVSSNVALVERYIV 570

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ F+++PDE I++ AF  GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 571  VHGQIILQQFSDFPDETIRRSAFATGLLMKMEQRRHTKLVMKKKVQVMRGE-NLNPSATM 629

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDT 710
            GP   S+RKVM+ATTTRLINRIW +YY+++ PED K+    EA E ++  E+ E+E+ + 
Sbjct: 630  GPA--SRRKVMRATTTRLINRIWSDYYTHHFPEDSKDADVNEAKEIDDELEENEDEDAEE 687

Query: 711  EEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGS 768
            E +       +   S   +     T KEI WEGE + K  SG ALYK A V    ++LG 
Sbjct: 688  EAQIEEENVSKTPPSTRSRKLVSQTCKEIRWEGEAIGKTPSGEALYKCAYVRELRINLGR 747

Query: 769  AVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCR 828
             V +E D+  +L V+ FVEYMF+   G K+ HG ++Q+GS TVLGN ANER++FL N+C 
Sbjct: 748  TVALE-DDSGEL-VMCFVEYMFQKLNGAKMVHGRLLQKGSETVLGNAANERDLFLTNECL 805

Query: 829  DLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPE 888
            + EL+DIK+ + V+++S+PWGH++RK+ A AD+++RA+AE+RKKKGLP EY CKSLYWPE
Sbjct: 806  EFELEDIKELMSVNLQSLPWGHKYRKENAEADRIERAKAEDRKKKGLPMEYLCKSLYWPE 865

Query: 889  RGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPH 948
            +GAFF LP D +GLG G C +C  KE + ++   ++ SK SF+Y    Y V+DY+YI P 
Sbjct: 866  KGAFFSLPHDKLGLGNGFCSSCQQKEPDCDE--LQILSKNSFIYRNITYNVNDYLYIRPD 923

Query: 949  HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
             F+ ++    TFK GRNVGLKPYVVC LL++  P   ++    ST++ VRRF+RPDDIS+
Sbjct: 924  FFSQEEDRA-TFKGGRNVGLKPYVVCHLLDVHEPAGSRKIHPASTKISVRRFYRPDDISS 982

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
             KAY SDIREVYYSE    + V+ I GKCEV+KK DI   + P + +H FFCEH +DP+ 
Sbjct: 983  AKAYVSDIREVYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVEHEFFCEHFYDPAT 1042

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            G+LKQLP ++KL   S    +  A ++ KGK I   D+++ +K    S+EN LATLDIFA
Sbjct: 1043 GALKQLPPNVKLM--SVQQKATGALKKNKGKQICESDQVDSDKCTKVSKENRLATLDIFA 1100

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNVIL+A+M+KCGDA+
Sbjct: 1101 GCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDAD 1160

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMI
Sbjct: 1161 DCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMI 1220

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILEAG FGV+Q
Sbjct: 1221 LAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQ 1280

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +STA GAPFRA+TVRD
Sbjct: 1281 SRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRD 1340

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DHISKEMNELNLIRCQ+IPKR
Sbjct: 1341 TIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKR 1400

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            PG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQP
Sbjct: 1401 PGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQP 1460

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNAVPP LAFALGRKL
Sbjct: 1461 MGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKL 1520

Query: 1549 KEAVESKR 1556
            KEAV++KR
Sbjct: 1521 KEAVDAKR 1528


>gi|218193912|gb|EEC76339.1| hypothetical protein OsI_13909 [Oryza sativa Indica Group]
          Length = 1527

 Score = 1821 bits (4717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1507 (60%), Positives = 1146/1507 (76%), Gaps = 46/1507 (3%)

Query: 60   KRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLT--ARQDGDRPNRRLND 117
            KRPKR AAC++FKEKS+ +SEK  ++  K+ +  + EI AV LT    +DG +P R++ D
Sbjct: 57   KRPKRAAACSNFKEKSLDLSEKDSIITIKESRVEEKEIEAVNLTRTGPEDG-QPCRKIID 115

Query: 118  FILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYED 177
            FILHD +G  QP EM E+DD+FI+ LI+PL +  ++++ KG+RC GFGRIE+W+ISGY++
Sbjct: 116  FILHDGDGNLQPFEMSEVDDIFITALIMPLDDDLEKDRGKGIRCSGFGRIENWAISGYDE 175

Query: 178  GSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELL 237
            G+ VIW+ST+ +DY C+KPASSY+ Y+E F EKAR C+EVYKKL+++ GGN    ++EL+
Sbjct: 176  GAAVIWVSTETSDYKCVKPASSYRSYFEHFSEKARVCVEVYKKLARSVGGNPQVDLEELI 235

Query: 238  AGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEE 297
            AGVVRS++ ++ F G V+ KDFVIS GEFI+ QLIGLD T+  +D+  A LPVLVALK+E
Sbjct: 236  AGVVRSINSNRSFNGTVT-KDFVISSGEFIYKQLIGLDHTAGNDDEMLATLPVLVALKDE 294

Query: 298  SSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELW 357
               R  F  + A    G L    ++ DG  K            EDEDAKLARLLQEEE W
Sbjct: 295  CKSRAGFTHLPAMPSNGTL----RIKDGQDKG---------LTEDEDAKLARLLQEEEEW 341

Query: 358  QSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDID 417
            +  KQ+  +G++      YIKI E EIANDYP P +Y+P  +E DE + +DSD      D
Sbjct: 342  KMMKQRGKRGTS--QKNIYIKICETEIANDYPLPAYYKPYNQEMDEYI-FDSDIGMYS-D 397

Query: 418  QLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQC 477
             +P R+L +W+LYNSDSRLISLEL+PMK   + D+ +FGSG M  D+GS  C   + +Q 
Sbjct: 398  DVPVRILDNWALYNSDSRLISLELIPMKAGAENDIVVFGSGFMREDDGS-CCSTAELAQL 456

Query: 478  --TSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEP 535
              +S  SG +D G  PIYLS IKEW++EFG SMI I+IRTD+AWY+L +P+KQYAPW EP
Sbjct: 457  HSSSSKSGREDPG-VPIYLSPIKEWVVEFGGSMICITIRTDVAWYKLRQPTKQYAPWCEP 515

Query: 536  VLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQ 595
            VLKTAR+A+SIIT+LKEQ+R S+LSF +VIK+++E      ++ISS    VERYVVVHGQ
Sbjct: 516  VLKTARLAVSIITLLKEQSRASKLSFAEVIKKVAEFDSRHPAFISSKAPTVERYVVVHGQ 575

Query: 596  IVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVV 655
            I+LQ FA++PDE +K+CAFI GL+ KMEE  HTK  +KKK  Q    NLNP A MGP++ 
Sbjct: 576  IILQQFADFPDESVKRCAFITGLLAKMEESRHTKLAIKKKSQQMRGENLNPSAKMGPIL- 634

Query: 656  SKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEE-QGENEEDDTEEEK 714
             ++K+M+ATTT LI++IWGEYY+ Y P D KEE   + NE +E+++ Q ENE++D EEE 
Sbjct: 635  -RKKLMRATTTMLISKIWGEYYATYFPGDTKEE---DQNEPKEIDDDQEENEDNDAEEEV 690

Query: 715  LISEERQISCSVAVQIKSRS--TKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAV 770
             + +E+      + + +  S  T+KEI WEG+   K  SG  LYK  IV    +S+G+ V
Sbjct: 691  NVQDEKATRTPPSTRSRKSSADTRKEIKWEGQTAGKTVSGEVLYKCVIVQDLSISVGATV 750

Query: 771  LVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDL 830
             +E D  +   ++ FVEYM+E   G  + HGII+Q GS TVLGN AN+REVFL N C + 
Sbjct: 751  TIEDDSGET--IMCFVEYMYEKLDGKNMIHGIILQEGSQTVLGNAANDREVFLTNDCLEF 808

Query: 831  ELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERG 890
            E  DIK+ V V+I+S+PWGH++RK+ + A ++++A+AEERK+KGLP EY CKSLYWPE+G
Sbjct: 809  EASDIKELVTVNIQSLPWGHKYRKENSEAKRIEKAKAEERKRKGLPVEYICKSLYWPEKG 868

Query: 891  AFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHF 950
             FF LP D +G G G C +C  K    E   FK+ S++SFV+    Y +HD++YI P  F
Sbjct: 869  GFFSLPYDKIGNGTGICSSCERKPVGNE---FKLLSESSFVFENITYNIHDFLYIRPEFF 925

Query: 951  TWDKAEG-ETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE 1009
            +  + EG ET+KAGRNVGLKPY VC LL +  P   ++A  +ST+VKVRRF+RPDDIS+ 
Sbjct: 926  S--QGEGHETYKAGRNVGLKPYAVCHLLSVHGPAGSRKANPESTKVKVRRFYRPDDISST 983

Query: 1010 KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKG 1069
            KAY SDIREVYYSE+   + V  I GKCEVR K+D+P  + PA+ +H+F CE+L+DP+ G
Sbjct: 984  KAYSSDIREVYYSEDIISVPVVMIEGKCEVRLKDDLPNSDLPAVVEHVFCCEYLYDPANG 1043

Query: 1070 SLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAG 1129
            +LKQLP +++L   +  +    AS++ KGK I   +    +K      EN LATLDIFAG
Sbjct: 1044 ALKQLPPNVRLVTLTRKV---PASKKNKGKQICDIELGGSDKPKDGQSENCLATLDIFAG 1100

Query: 1130 CGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAED 1189
            CGGLSEGLQ+SG+S TKWAIEYEEPAG+AF  NHPE+ + + NCNVIL+A+M+KCGD++D
Sbjct: 1101 CGGLSEGLQRSGLSLTKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAIMDKCGDSDD 1160

Query: 1190 CVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL 1249
            C+STSEAAE AA L E+ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMIL
Sbjct: 1161 CISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMIL 1220

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
            AFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA+GV+QS
Sbjct: 1221 AFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQS 1280

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDT 1369
            RKRAFIWAA+P +TLPEWPEPMHVFA+PELKI L D   Y+AV+STA GAPFR++TVRDT
Sbjct: 1281 RKRAFIWAAAPGETLPEWPEPMHVFASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDT 1340

Query: 1370 IGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
            IGDLPAV NGA K  ++Y + PVSWFQK+IR +MA L DHISKEMNELNLIRC+ IPKRP
Sbjct: 1341 IGDLPAVENGAGKPTIQYGSGPVSWFQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRP 1400

Query: 1430 GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM 1489
            G DWHDLPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPM
Sbjct: 1401 GCDWHDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPM 1460

Query: 1490 GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            GKVGMCFHP+QDRI+TVRECARSQGFPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLK
Sbjct: 1461 GKVGMCFHPEQDRIITVRECARSQGFPDSYRFAGNIQNKHRQIGNAVPPPLAYALGRKLK 1520

Query: 1550 EAVESKR 1556
            +A+++KR
Sbjct: 1521 QAIDAKR 1527


>gi|50509186|dbj|BAD30340.1| putative DNA methyltransferase [Oryza sativa Japonica Group]
          Length = 1548

 Score = 1818 bits (4710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 901/1508 (59%), Positives = 1154/1508 (76%), Gaps = 42/1508 (2%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPN 112
            DS    KRP+R AAC+DFKEKSVR+S+KS +V    ++  ++E+ AV LT    +  RP 
Sbjct: 77   DSRAACKRPRRAAACSDFKEKSVRLSDKSSVVATNGNKMEEEEMDAVKLTKLGPEVQRPC 136

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD +G  QP EM EIDD FI+ LI+P+ +  +++++KGVRCEGFGRIE W+I
Sbjct: 137  RKLIDFILHDADGKLQPFEMSEIDDFFITALIMPMDDDLEKDRQKGVRCEGFGRIEDWAI 196

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+ V+W+ST++ADY+C+KPA +YK YY+ F+EKA+ C+EVY+KL+++ GGN +  
Sbjct: 197  SGYDEGTAVVWVSTEVADYECVKPAGNYKSYYDHFYEKAQVCVEVYRKLARSVGGNPNLG 256

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            ++ELLA VVRS++  K + G +S KDFVIS GEF++NQLIGLDET+  +D+KFA LPVL+
Sbjct: 257  LEELLASVVRSINAIKGYSGTLS-KDFVISNGEFVYNQLIGLDETANTDDEKFATLPVLL 315

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            AL++    R     V  + L  N++ GS K+ D + K            ED+D KLARLL
Sbjct: 316  ALRDGCKSR-----VEVSKLQPNISNGSLKINDAECK---------EVSEDDDEKLARLL 361

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  KQ+  +G+TS  N  YIKI+E EIANDYP P +Y+PS +E DE + +DS+ 
Sbjct: 362  QQEEEWKMMKQRGKRGTTSQKN-VYIKISEAEIANDYPLPAYYKPSSQEMDEYI-FDSE- 418

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
            DS   D +P R+L++W+LYN+DSRLI LEL+PMK   + D+ +FGSG M  D+GS  C  
Sbjct: 419  DSFYSD-VPVRILNNWALYNADSRLIPLELIPMKAGAENDIVVFGSGFMREDDGS-CCST 476

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
             +S++ +S  S      G  IYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 477  AESAKLSSSSSSNHQDAGVSIYLSPIKEWVIEFGGSMICITIRTDVAWYKLRQPTKQYAP 536

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+++SIIT+LKEQ+R S+LSF DVIK+++E  K   +++SS+ A VERY+V
Sbjct: 537  WCEPVLKTARLSVSIITLLKEQSRASKLSFADVIKKVAEFDKGSPAFVSSNVALVERYIV 596

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ F+++PDE I++ AF  GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 597  VHGQIILQQFSDFPDETIRRSAFATGLLMKMEQRRHTKLVMKKKVQVMRGE-NLNPSATM 655

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDT 710
            GP   S+RKVM+ATTTRLINRIW +YY+++ PED K+    EA E ++  E+ E+E+ + 
Sbjct: 656  GPA--SRRKVMRATTTRLINRIWSDYYTHHFPEDSKDADVNEAKEIDDELEENEDEDAEE 713

Query: 711  EEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGS 768
            E +       +   S   +     T KEI WEGE + K  SG ALYK A V    ++LG 
Sbjct: 714  EAQIEEENVSKTPPSTRSRKLVSQTCKEIRWEGEAIGKTPSGEALYKCAYVRELRINLGR 773

Query: 769  AVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCR 828
             V +E D+  +L V+ FVEYMF+   G K+ HG ++Q+GS TVLGN ANER++FL N+C 
Sbjct: 774  TVALE-DDSGEL-VMCFVEYMFQKLNGAKMVHGRLLQKGSETVLGNAANERDLFLTNECL 831

Query: 829  DLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPE 888
            + EL+DIK+ + V+++S+PWGH++RK+ A AD+++RA+AE+RKKKGLP EY CKSLYWPE
Sbjct: 832  EFELEDIKELMSVNLQSLPWGHKYRKENAEADRIERAKAEDRKKKGLPMEYLCKSLYWPE 891

Query: 889  RGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPH 948
            +GAFF LP D +GLG G C +C  KE + ++   ++ SK SF+Y    Y V+DY+YI P 
Sbjct: 892  KGAFFSLPHDKLGLGNGFCSSCQQKEPDCDE--LQILSKNSFIYRNITYNVNDYLYIRPD 949

Query: 949  HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
             F+ ++    TFK GRNVGLKPYVVC LL++  P   ++    ST++ VRRF+RPDDIS+
Sbjct: 950  FFSQEEDRA-TFKGGRNVGLKPYVVCHLLDVHEPAGSRKIHPASTKISVRRFYRPDDISS 1008

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
             KA       VYYSE    + V+ I GKCEV+KK DI   + P + +H FFCEH +DP+ 
Sbjct: 1009 AKA-------VYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVEHEFFCEHFYDPAT 1061

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            G+LKQLP ++KL   S    +  A ++ KGK I   D+++ +K    S+EN LATLDIFA
Sbjct: 1062 GALKQLPPNVKLM--SVQQKATGALKKNKGKQICESDQVDSDKCTKVSKENRLATLDIFA 1119

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNVIL+A+M+KCGDA+
Sbjct: 1120 GCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDAD 1179

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMI
Sbjct: 1180 DCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMI 1239

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILEAG FGV+Q
Sbjct: 1240 LAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQ 1299

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +STA GAPFRA+TVRD
Sbjct: 1300 SRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRD 1359

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DHISKEMNELNLIRCQ+IPKR
Sbjct: 1360 TIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKR 1419

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            PG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQP
Sbjct: 1420 PGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQP 1479

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNAVPP LAFALGRKL
Sbjct: 1480 MGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKL 1539

Query: 1549 KEAVESKR 1556
            KEAV++KR
Sbjct: 1540 KEAVDAKR 1547


>gi|75233438|sp|Q7Y1I7.1|DNM1A_ORYSJ RecName: Full=DNA (cytosine-5)-methyltransferase 1A; Short=OsMET1a;
            AltName: Full=DNA methyltransferase 1-1; Short=OsMET1-1
 gi|31126751|gb|AAP44671.1| putative DNA (cytosine-5-)-methyltransferase [Oryza sativa Japonica
            Group]
 gi|171196101|dbj|BAG15928.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
 gi|222625970|gb|EEE60102.1| hypothetical protein OsJ_12965 [Oryza sativa Japonica Group]
          Length = 1527

 Score = 1818 bits (4709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1542 (59%), Positives = 1157/1542 (75%), Gaps = 52/1542 (3%)

Query: 31   KSEVPETKDSTSGQKEKMKKLSQDSEEP------RKRPKRMAACTDFKEKSVRISEKSYL 84
            K + P   ++   + +  KK S  + EP       KRPKR AAC++FKEKS+ +SEK  +
Sbjct: 22   KEDEPVENENLESEFDVSKKESNGATEPGNEPVASKRPKRAAACSNFKEKSLDLSEKDSI 81

Query: 85   VEAKKDQYADDEIVAVGLT--ARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISG 142
            +  K+ +  + EI AV LT    +DG +P R++ DFILHD +G  QP EM E+DD+FI+ 
Sbjct: 82   ITIKESRVEEKEIEAVNLTRTGPEDG-QPCRKIIDFILHDGDGNLQPFEMSEVDDIFITA 140

Query: 143  LILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKK 202
            LI+PL +  ++++ KG+ C GFGRIE+W+ISGY++G+ VIW+ST+ +DY C+KPASSY+ 
Sbjct: 141  LIMPLDDDLEKDRGKGICCSGFGRIENWAISGYDEGAAVIWVSTETSDYKCVKPASSYRS 200

Query: 203  YYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVIS 262
            Y+E F EKAR C+EVYKKL+++ GGN    ++EL+AGVVRS++ ++ F G V+ KDFVIS
Sbjct: 201  YFEHFSEKARVCVEVYKKLARSVGGNPQVDLEELIAGVVRSINSNRSFNGTVT-KDFVIS 259

Query: 263  QGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKV 322
             GEFI+ QLIGLD T+  +D+  A LPVLVALK+E   R  F  + A    G L    ++
Sbjct: 260  SGEFIYKQLIGLDHTAGNDDEMLATLPVLVALKDECKSRAGFTHLPAMPSNGTL----RI 315

Query: 323  GDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINED 382
             DG  K            EDEDAKLARLLQEEE W+  KQ+  +G++      YIKI E 
Sbjct: 316  KDGQDKG---------LTEDEDAKLARLLQEEEEWKMMKQRGKRGTS--QKNIYIKICET 364

Query: 383  EIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELL 442
            EIANDYP P +Y+P  +E DE + +DSD      D +P R+L +W+LYNSDSRLISLEL+
Sbjct: 365  EIANDYPLPAYYKPYNQEMDEYI-FDSDIGMYS-DDVPVRILDNWALYNSDSRLISLELI 422

Query: 443  PMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQC--TSGVSGAQDAGGFPIYLSSIKEW 500
            PMK   + D+ +FGSG M  D+GS  C   + +Q   +S  SG +D G  PIYLS IKEW
Sbjct: 423  PMKAGAENDIVVFGSGFMREDDGS-CCSTAELAQLHSSSSKSGREDPG-VPIYLSPIKEW 480

Query: 501  MIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLS 560
            ++EFG SMI I+IRTD+AWY+L +P+KQYAPW EPVLKTAR+A+SIIT+LKEQ+R S+LS
Sbjct: 481  VVEFGGSMICITIRTDVAWYKLRQPTKQYAPWCEPVLKTARLAVSIITLLKEQSRASKLS 540

Query: 561  FTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMK 620
            F +VIK+++E      ++ISS    VERYVVVHGQI+LQ FA++PDE +K+CAFI GL+ 
Sbjct: 541  FAEVIKKVAEFDSRHPAFISSKAPTVERYVVVHGQIILQQFADFPDESVKRCAFITGLLA 600

Query: 621  KMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNY 680
            KMEE  HTK  +KKK  Q    NLNP A MGP++  ++K+M+ATTT LI++IWGEYY+ Y
Sbjct: 601  KMEESRHTKLAIKKKSQQMRGENLNPSAKMGPIL--RKKLMRATTTMLISKIWGEYYATY 658

Query: 681  SPEDGKEETACEANEDEEVEE-QGENEEDDTEEEKLISEERQISCSVAVQIKSRS--TKK 737
             P D KEE   + NE +E+++ Q ENE++D EEE  + +E+      + + +  S  T+K
Sbjct: 659  FPGDTKEE---DQNEPKEIDDDQEENEDNDAEEEVNVQDEKATRTPPSTRSRKSSADTRK 715

Query: 738  EITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGG 795
            EI WEG+   K  SG  LYK  IV    +S+G+ V  E D  +   ++ FVEYM+E   G
Sbjct: 716  EIKWEGQTAGKTVSGEVLYKCVIVQDLSISVGATVTTEDDSGET--IMCFVEYMYEKLDG 773

Query: 796  CKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKD 855
              + HGII+Q GS TVLGN AN+REVFL N C + E  DIK+ V V+I+S+PWGH++RK+
Sbjct: 774  KNMIHGIILQEGSQTVLGNAANDREVFLTNDCLEFEASDIKELVTVNIQSLPWGHKYRKE 833

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKES 915
             + A ++++A+AEERK+KGLP EY CKSLYWPE+G FF LP D +G G G C +C  K  
Sbjct: 834  NSEAKRIEKAKAEERKRKGLPVEYICKSLYWPEKGGFFSLPYDKIGNGTGICSSCERKPV 893

Query: 916  EKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEG-ETFKAGRNVGLKPYVVC 974
              E   FK+ S++SFV+    Y +HD++YI P  F+  + EG ET+KAGRNVGLKPY VC
Sbjct: 894  GNE---FKLLSESSFVFENITYNIHDFLYIRPEFFS--QGEGHETYKAGRNVGLKPYAVC 948

Query: 975  QLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIA 1034
             LL +  P   ++A  +ST+VKVRRF+RPDDIS+ KAY SDIREVYYSE+   + V  I 
Sbjct: 949  HLLSVHGPAGSRKANPESTKVKVRRFYRPDDISSTKAYSSDIREVYYSEDIISVPVVMIE 1008

Query: 1035 GKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASR 1094
            GKCEVR K+D+P  + PA+ +H+F CE+L+DP+ G+LKQLP +++L   +  +    AS+
Sbjct: 1009 GKCEVRLKDDLPNSDLPAVVEHVFCCEYLYDPANGALKQLPPNVRLVTLTRKV---PASK 1065

Query: 1095 RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
            + KGK I   +    +K      EN LATLDIFAGCGGLSEGLQ+SG+S TKWAIEYEEP
Sbjct: 1066 KNKGKQICDIELGGSDKPKDGQSENCLATLDIFAGCGGLSEGLQRSGLSLTKWAIEYEEP 1125

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            AG+AF  NHPE+ + + NCNVIL+A+M+KCGD++DC+STSEAAE AA L E+ I NLP+P
Sbjct: 1126 AGDAFGENHPEAAVFVENCNVILKAIMDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVP 1185

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSF
Sbjct: 1186 GEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSF 1245

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
            NKGQTFRLTLASLLEMGYQVRFGILEAGA+GV+QSRKRAFIWAA+P +TLPEWPEPMHVF
Sbjct: 1246 NKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPGETLPEWPEPMHVF 1305

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
            A+PELKI L D   Y+AV+STA GAPFR++TVRDTIGDLPAV NGA K  ++Y + PVSW
Sbjct: 1306 ASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENGAGKPTIQYGSGPVSW 1365

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
            FQK+IR +MA L DHISKEMNELNLIRC+ IPKRPG DWHDLPDEKVKLSTGQ+VDLIPW
Sbjct: 1366 FQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLSTGQMVDLIPW 1425

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
            CLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHP+QDRI+TVRECARSQG
Sbjct: 1426 CLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRIITVRECARSQG 1485

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            FPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLK+A+++KR
Sbjct: 1486 FPDSYRFAGNIQNKHRQIGNAVPPPLAYALGRKLKQAIDAKR 1527


>gi|18653391|gb|AAL77415.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
          Length = 1522

 Score = 1817 bits (4706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1542 (59%), Positives = 1157/1542 (75%), Gaps = 52/1542 (3%)

Query: 31   KSEVPETKDSTSGQKEKMKKLSQDSEEP------RKRPKRMAACTDFKEKSVRISEKSYL 84
            K + P   ++   + +  KK S  + EP       KRPKR AAC++FKEKS+ +SEK  +
Sbjct: 17   KEDEPVENENLESEFDVSKKESNGATEPGNEPVASKRPKRAAACSNFKEKSLDLSEKDSI 76

Query: 85   VEAKKDQYADDEIVAVGLT--ARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISG 142
            +  K+ +  + EI AV LT    +DG +P R++ DFILHD +G  QP EM E+DD+FI+ 
Sbjct: 77   ITIKESRVEEKEIEAVNLTRTGPEDG-QPCRKIIDFILHDGDGNLQPFEMSEVDDIFITA 135

Query: 143  LILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKK 202
            LI+PL +  ++++ KG+ C GFGRIE+W+ISGY++G+ VIW+ST+ +DY C+KPASSY+ 
Sbjct: 136  LIMPLDDDLEKDRGKGICCSGFGRIENWAISGYDEGAAVIWVSTETSDYKCVKPASSYRS 195

Query: 203  YYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVIS 262
            Y+E F EKAR C+EVYKKL+++ GGN    ++EL+AGVVRS++ ++ F G V+ KDFVIS
Sbjct: 196  YFEHFSEKARVCVEVYKKLARSVGGNPQVDLEELIAGVVRSINSNRSFNGTVT-KDFVIS 254

Query: 263  QGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKV 322
             GEFI+ QLIGLD T+  +D+  A LPVLVALK+E   R  F  + A    G L    ++
Sbjct: 255  SGEFIYKQLIGLDHTAGNDDEMLATLPVLVALKDECKSRAGFTHLPAMPSNGTL----RI 310

Query: 323  GDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINED 382
             DG  K            EDEDAKLARLLQEEE W+  KQ+  +G++      YIKI E 
Sbjct: 311  KDGQDKG---------LTEDEDAKLARLLQEEEEWKMMKQRGKRGTSQ--KNIYIKICET 359

Query: 383  EIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELL 442
            EIANDYP P +Y+P  +E DE + +DSD      D +P R+L +W+LYNSDSRLISLEL+
Sbjct: 360  EIANDYPLPAYYKPYNQEMDEYI-FDSDIGMYS-DDVPVRILDNWALYNSDSRLISLELI 417

Query: 443  PMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQC--TSGVSGAQDAGGFPIYLSSIKEW 500
            PMK   + D+ +FGSG M  D+GS  C   + +Q   +S  SG +D G  PIYLS IKEW
Sbjct: 418  PMKAGAENDIVVFGSGFMREDDGS-CCSTAELAQLHSSSSKSGREDPG-VPIYLSPIKEW 475

Query: 501  MIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLS 560
            ++EFG SMI I+IRTD+AWY+L +P+KQYAPW EPVLKTAR+A+SIIT+LKEQ+R S+LS
Sbjct: 476  VVEFGGSMICITIRTDVAWYKLRQPTKQYAPWCEPVLKTARLAVSIITLLKEQSRASKLS 535

Query: 561  FTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMK 620
            F +VIK+++E      ++ISS    VERYVVVHGQI+LQ FA++PDE +K+CAFI GL+ 
Sbjct: 536  FAEVIKKVAEFDSRHPAFISSKAPTVERYVVVHGQIILQQFADFPDESVKRCAFITGLLA 595

Query: 621  KMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNY 680
            KMEE  HTK  +KKK  Q    NLNP A MGP++  ++K+M+ATTT LI++IWGEYY+ Y
Sbjct: 596  KMEESRHTKLAIKKKSQQMRGENLNPSAKMGPIL--RKKLMRATTTMLISKIWGEYYATY 653

Query: 681  SPEDGKEETACEANEDEEVEE-QGENEEDDTEEEKLISEERQISCSVAVQIKSRS--TKK 737
             P D KEE   + NE +E+++ Q ENE++D EEE  + +E+      + + +  S  T+K
Sbjct: 654  FPGDTKEE---DQNEPKEIDDDQEENEDNDAEEEVNVQDEKATRTPPSTRSRKSSADTRK 710

Query: 738  EITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGG 795
            EI WEG+   K  SG  LYK  IV    +S+G+ V  E D  +   ++ FVEYM+E   G
Sbjct: 711  EIKWEGQTAGKTVSGEVLYKCVIVQDLSISVGATVTTEDDSGET--IMCFVEYMYEKLDG 768

Query: 796  CKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKD 855
              + HGII+Q GS TVLGN AN+REVFL N C + E  DIK+ V V+I+S+PWGH++RK+
Sbjct: 769  KNMIHGIILQEGSQTVLGNAANDREVFLTNDCLEFEASDIKELVTVNIQSLPWGHKYRKE 828

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKES 915
             + A ++++A+AEERK+KGLP EY CKSLYWPE+G FF LP D +G G G C +C  K  
Sbjct: 829  NSEAKRIEKAKAEERKRKGLPVEYICKSLYWPEKGGFFSLPYDKIGNGTGICSSCERKPV 888

Query: 916  EKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEG-ETFKAGRNVGLKPYVVC 974
              E   FK+ S++SFV+    Y +HD++YI P  F+  + EG ET+KAGRNVGLKPY VC
Sbjct: 889  GNE---FKLLSESSFVFENITYNIHDFLYIRPEFFS--QGEGHETYKAGRNVGLKPYAVC 943

Query: 975  QLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIA 1034
             LL +  P   ++A  +ST+VKVRRF+RPDDIS+ KAY SDIREVYYSE+   + V  I 
Sbjct: 944  HLLSVHGPAGSRKANPESTKVKVRRFYRPDDISSTKAYSSDIREVYYSEDIISVPVVMIE 1003

Query: 1035 GKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASR 1094
            GKCEVR K+D+P  + PA+ +H+F CE+L+DP+ G+LKQLP +++L   +  +    AS+
Sbjct: 1004 GKCEVRLKDDLPNSDLPAVVEHVFCCEYLYDPANGALKQLPPNVRLVTLTRKV---PASK 1060

Query: 1095 RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
            + KGK I   +    +K      EN LATLDIFAGCGGLSEGLQ+SG+S TKWAIEYEEP
Sbjct: 1061 KNKGKQICDIELGGSDKPKDGQSENCLATLDIFAGCGGLSEGLQRSGLSLTKWAIEYEEP 1120

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            AG+AF  NHPE+ + + NCNVIL+A+M+KCGD++DC+STSEAAE AA L E+ I NLP+P
Sbjct: 1121 AGDAFGENHPEAAVFVENCNVILKAIMDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVP 1180

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSF
Sbjct: 1181 GEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSF 1240

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
            NKGQTFRLTLASLLEMGYQVRFGILEAGA+GV+QSRKRAFIWAA+P +TLPEWPEPMHVF
Sbjct: 1241 NKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPGETLPEWPEPMHVF 1300

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
            A+PELKI L D   Y+AV+STA GAPFR++TVRDTIGDLPAV NGA K  ++Y + PVSW
Sbjct: 1301 ASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENGAGKPTIQYGSGPVSW 1360

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
            FQK+IR +MA L DHISKEMNELNLIRC+ IPKRPG DWHDLPDEKVKLSTGQ+VDLIPW
Sbjct: 1361 FQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLSTGQMVDLIPW 1420

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
            CLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHP+QDRI+TVRECARSQG
Sbjct: 1421 CLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRIITVRECARSQG 1480

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            FPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLK+A+++KR
Sbjct: 1481 FPDSYRFAGNIQNKHRQIGNAVPPPLAYALGRKLKQAIDAKR 1522


>gi|414883785|tpg|DAA59799.1| TPA: cytosine-specific methyltransferase [Zea mays]
          Length = 1536

 Score = 1813 bits (4695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1555 (58%), Positives = 1134/1555 (72%), Gaps = 76/1555 (4%)

Query: 35   PETKDSTSGQKEKMKKLSQDSEE-------------PRKRPKRMAACTDFKEKSVRISEK 81
            P+ K+  S +  K++  S D+ E              RKRP+R AAC+DFKEKS+R+SEK
Sbjct: 16   PQKKEEESTENNKLENGSLDATEEVHHGVEKGDGHVTRKRPRRSAACSDFKEKSIRLSEK 75

Query: 82   SYLVEAKKDQYADDEIVAVGLTARQDGDRPN-RRLNDFILHDENGLPQPLEMLEIDDLFI 140
              +V  KK++  ++E+ AV LT     D P  R+L DFILHD  G PQP EM EIDD FI
Sbjct: 76   KSVVMVKKNRMEEEEVDAVNLTKLGPEDPPPCRKLIDFILHDAEGNPQPFEMSEIDDFFI 135

Query: 141  SGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSY 200
            + LI+P+ +  ++E+E+GVRCEGFGRIE W+ISGY++G+PVIW+STD+ADY+C+KP+++Y
Sbjct: 136  TALIMPMDDDLEKERERGVRCEGFGRIEDWNISGYDEGTPVIWVSTDVADYECVKPSTNY 195

Query: 201  KKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFV 260
            K Y++ F+EKA+ C+EV+KKL+K+ GGN +  +DELLA VVRS +  K + G +S KD V
Sbjct: 196  KSYFDHFYEKAQVCVEVFKKLAKSVGGNPNQGLDELLASVVRSTNAMKGYSGTMS-KDLV 254

Query: 261  ISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGS 320
            IS GEF++NQL+GLDETS  +D+KFA LPVL++L+++   R     V    L  N +  S
Sbjct: 255  ISIGEFVYNQLVGLDETSNNDDEKFATLPVLLSLRDQCRSR-----VELTKLPSNFSNTS 309

Query: 321  -KVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKI 379
             K+ D +                  AKLARLLQ+EE W+  K+++ +  T      YIKI
Sbjct: 310  LKIKDSECDETAEDDDD--------AKLARLLQQEEEWKMMKKQRGRRGTPSQKNVYIKI 361

Query: 380  NEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISL 439
            +E EIANDYP P +Y+P  +E DE +    D      D +P R+L++W+LYN+DSRLISL
Sbjct: 362  SEAEIANDYPLPAYYKPFSQEMDEYIFDSDDSIF--SDDVPVRILNNWTLYNADSRLISL 419

Query: 440  ELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKE 499
            EL+PMK   + DV IFGSG M  D+GS           +S     Q   G PIYLS IKE
Sbjct: 420  ELIPMKSGAENDVVIFGSGFMRDDDGSCCSTAESVKSSSSSSKADQLDAGIPIYLSPIKE 479

Query: 500  WMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRL 559
            W+IEFG SMI I+IRTD+AWY+L +P+KQYAPW EPVLKTAR+A+SIIT+LKEQ+R S+L
Sbjct: 480  WIIEFGGSMICITIRTDVAWYKLRQPTKQYAPWCEPVLKTARLAVSIITLLKEQSRASKL 539

Query: 560  SFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLM 619
            SF DVI++++E  K   ++ISS+   VERY+VVHGQI+LQ FA++PDE I++ AF+ GL+
Sbjct: 540  SFADVIRKVAEFDKGNPAFISSNITLVERYIVVHGQIILQQFADFPDETIRRSAFVSGLL 599

Query: 620  KKMEERHHTKWLVKKK-KVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
             KME+R HTK ++KKK +V + E NLNP A+MGP   S++K M+ATTTRLINRIW +YY+
Sbjct: 600  LKMEQRRHTKLVMKKKTQVMRGE-NLNPSAAMGPA--SRKKAMRATTTRLINRIWSDYYA 656

Query: 679  NYSPEDGKEETACEANEDE---------------EVEEQGENEEDDTEEEKLISEERQIS 723
            ++ PED KE    E  E +               ++EE        T   KL+S+     
Sbjct: 657  HHFPEDSKEGDGNETKEIDDEQEENEDEDAEDEGQIEENISKTPPSTRSRKLLSQ----- 711

Query: 724  CSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLP 781
                       T KEI WEGE   K  SG  LYK A V    + +G  V +E D  D   
Sbjct: 712  -----------TCKEIRWEGETSGKTLSGETLYKCAYVRELRIPVGGTVALEDDSGDT-- 758

Query: 782  VIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVV 841
            VI FVEYMF+   G K+ HG I+Q+GS T+LGN ANEREVFL N C + +L DIK+ V+V
Sbjct: 759  VICFVEYMFQKVDGSKMVHGRILQKGSQTILGNAANEREVFLTNDCLEFKLDDIKELVMV 818

Query: 842  DIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMG 901
            DI+S PWGH++RK+ + ADKV++ +AEERKKKG P  Y+CKSLYWPE+GAFF L  D MG
Sbjct: 819  DIQSRPWGHKYRKENSEADKVEQVKAEERKKKGQPMVYFCKSLYWPEKGAFFALSRDKMG 878

Query: 902  LGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFK 961
            LG G C +C   E + ++   K+ SKTSFVY    Y V++++YI P  F  D+    TFK
Sbjct: 879  LGSGLCSSCDNIEPDSDE--LKIFSKTSFVYRKVTYNVNEFLYIRPDFFAEDEDRA-TFK 935

Query: 962  AGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYY 1021
            AGRNVGLKPY VCQ+L I      K+    S  +  RRF+RPDDIS+ KAY SDIREVYY
Sbjct: 936  AGRNVGLKPYAVCQILSIPEGAGSKKLNPASANISARRFYRPDDISSAKAYASDIREVYY 995

Query: 1022 SEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLR 1081
            SE+   + V+ I GKCEVRKKND+ + + P +F+H+FFCE ++D + G+LKQLP +++  
Sbjct: 996  SEDVIDVPVDMIEGKCEVRKKNDLASSDLPVMFEHVFFCELIYDRASGALKQLPPNVRFM 1055

Query: 1082 YSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSG 1141
                 +   +A ++ KGK I   D+++  K     +EN LATLDIFAGCGGLSEGLQQ+G
Sbjct: 1056 ---SMVQRTSALKKNKGKQICEPDQIDSGKWLDVPKENRLATLDIFAGCGGLSEGLQQAG 1112

Query: 1142 ISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAA 1201
            +S TKWAIEYEEPAGEAF  NHPE+++ ++NCNVIL+A+M+KCGD +DCVSTSEAAE AA
Sbjct: 1113 VSFTKWAIEYEEPAGEAFNKNHPEAVVFVDNCNVILKAIMDKCGDTDDCVSTSEAAEQAA 1172

Query: 1202 SLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPR 1261
             L E  INNLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR
Sbjct: 1173 KLPEVNINNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPR 1232

Query: 1262 YFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPH 1321
            +FLLENVRNFVSFNKGQTFRL +ASLLEMGYQVRFGILEAGAFGV+QSRKRAFIWAA+P 
Sbjct: 1233 FFLLENVRNFVSFNKGQTFRLAVASLLEMGYQVRFGILEAGAFGVAQSRKRAFIWAAAPG 1292

Query: 1322 DTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
            + LP+WPEPMHVFA+PELKI L D   Y+A RSTA GAPFRA+TVRDTIGDLP VGNGAS
Sbjct: 1293 EMLPDWPEPMHVFASPELKITLPDGQYYAAARSTAGGAPFRAITVRDTIGDLPKVGNGAS 1352

Query: 1382 KTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKV 1441
            K  +EY  +PVSWFQK+IRGNM VL DHISKEMNELNLIRCQ IPKRPG DWHDLPDEKV
Sbjct: 1353 KLTLEYGGEPVSWFQKKIRGNMMVLNDHISKEMNELNLIRCQHIPKRPGCDWHDLPDEKV 1412

Query: 1442 KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQD 1501
            KLS GQ+ DLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQD
Sbjct: 1413 KLSNGQMADLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQD 1472

Query: 1502 RILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            RI+TVRECARSQGFPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLKEAV+ ++
Sbjct: 1473 RIITVRECARSQGFPDSYEFAGNIQNKHRQIGNAVPPPLAYALGRKLKEAVDKRQ 1527


>gi|357119215|ref|XP_003561341.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Brachypodium
            distachyon]
          Length = 1542

 Score = 1812 bits (4693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 889/1492 (59%), Positives = 1129/1492 (75%), Gaps = 28/1492 (1%)

Query: 68   CTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPN-RRLNDFILHDENGL 126
            C+DFKEKSVR+SEKS +V  KK++  ++EI A+ LT     D P  R+L DFILHD +G 
Sbjct: 73   CSDFKEKSVRLSEKSNVVMIKKNRMEEEEIDAINLTKLGPEDSPPCRKLIDFILHDADGN 132

Query: 127  PQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLST 186
             QP EM EIDD FI+ LI+P+ +  ++E+E+GVRCEGFGRIE W+ISGY++G+ V+WLST
Sbjct: 133  LQPFEMSEIDDFFITALIMPVDDDLEKERERGVRCEGFGRIEDWAISGYDEGTAVVWLST 192

Query: 187  DIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSG 246
            ++ADY+C+KPAS+Y+ YY  F+EKA+ C+EVY+KL ++ GGN + S++ELLA VVRS++ 
Sbjct: 193  ELADYECVKPASNYRSYYSHFYEKAQVCVEVYRKLMRSVGGNPNLSLEELLATVVRSINA 252

Query: 247  SKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQ 306
             + + G +S KDFVI+ GEF++NQLIGLD+T+  +D+K A LPVL+AL++E   R  F +
Sbjct: 253  IQGYSGTMS-KDFVIATGEFVYNQLIGLDQTAGNDDEKLATLPVLLALRDECKSRVEFNK 311

Query: 307  VNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQ 366
            +      G+L I       D + ++         ED+D KLARLLQEEE W+  K+++ +
Sbjct: 312  MPPKISNGSLKIN------DAECNEVA-------EDDDEKLARLLQEEEEWKMMKKQRGK 358

Query: 367  GSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHD 426
                     YIKI+E EIANDYP P +Y+PS +E DE + +D D D    D +P R+L++
Sbjct: 359  RGVPAQKNVYIKISEAEIANDYPLPAYYKPSTQEMDEYI-FDGD-DGMFSDDVPVRILNN 416

Query: 427  WSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQD 486
            W LYN+DSRLISLEL+PMK   + D+ IFGSG M  D+GS       ++  +S       
Sbjct: 417  WVLYNADSRLISLELIPMKSGTENDIVIFGSGFMRDDDGSCCSTAESANSSSSSSKAEHQ 476

Query: 487  AGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISI 546
              G PIYLS IKEW+IEFG SMI I+IRTD+AWY+L +P KQYAPW EPVLKTAR+A+SI
Sbjct: 477  DAGVPIYLSPIKEWLIEFGGSMICITIRTDVAWYKLRQPIKQYAPWCEPVLKTARLAVSI 536

Query: 547  ITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPD 606
            IT+LKEQ+R S+LSF DVIK+++E  K   ++ISS+ + VERY+VVHGQI+LQ FA++PD
Sbjct: 537  ITLLKEQSRASKLSFVDVIKKVAEFDKGDPAFISSNISLVERYIVVHGQIILQQFADFPD 596

Query: 607  EQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTT 666
            E I++ AF  GL+ KME+R HTK  +KKK       NLNP A+MG    SKRK M+ATTT
Sbjct: 597  ETIRRSAFATGLLMKMEQRRHTKLFMKKKAQVTRGENLNPIATMG--TSSKRKAMRATTT 654

Query: 667  RLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSV 726
            RLINRIW +YY+++ PED K+    EA E ++ +E+ E+E+ + E +    +  +   S 
Sbjct: 655  RLINRIWSDYYAHHFPEDSKDGDENEAKEIDDEQEENEDEDAEEEVQIEEEKVSETPPST 714

Query: 727  AVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIY 784
              +     T KEI WEG+   K  SG ALYK        +++G  V +E D  +   VI 
Sbjct: 715  RSRKLVSQTSKEIRWEGKSTGKTASGEALYKCGYARELRIAVGGTVTLEDDSGEI--VIC 772

Query: 785  FVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR 844
            FVEYMF+   G K+ HG ++Q+GS TVLGN ANERE+FL N C + EL+DIK+ V V+++
Sbjct: 773  FVEYMFQKPDGEKMVHGRMLQKGSETVLGNAANERELFLTNDCLEFELKDIKELVSVNLQ 832

Query: 845  SVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGV 904
            S+PWGH++RK+ + ADK++RAR EERKKKGLP EY C+SLYWPE+GAFF LP D +GLG 
Sbjct: 833  SMPWGHKYRKENSEADKIERARVEERKKKGLPMEYLCRSLYWPEKGAFFSLPHDKLGLGN 892

Query: 905  GSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGR 964
            G C +C  +E E+++   ++ SKTSF+Y    Y VHD++YI P  F+ ++  G T+KAGR
Sbjct: 893  GVCSSCEHREPERDE--LRILSKTSFIYRKVTYSVHDFLYIRPEFFSQEEDRG-TYKAGR 949

Query: 965  NVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEE 1024
            N+GLKPY VC LL++  P   K+    S +V VRRF+RPDDIS++KAY SDIREVYYSE+
Sbjct: 950  NIGLKPYAVCHLLDVCEPVGSKKINPASAKVSVRRFYRPDDISSDKAYTSDIREVYYSED 1009

Query: 1025 THLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSS 1084
               + V+ I GKC+VRKK DI   + P + +H+FFCEH++DP  G+LKQLP ++KL  +S
Sbjct: 1010 IINVPVDMIEGKCDVRKKIDISNSDLPVMVEHVFFCEHIYDPMTGALKQLPPNVKL--TS 1067

Query: 1085 GSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS 1144
                +  A ++ KGK I   D+++ +K+    +EN ++TLDIFAGCGGLSEGLQQ+G S 
Sbjct: 1068 MVQKAAGALKKNKGKQICENDQVDSDKRKEVPKENRISTLDIFAGCGGLSEGLQQAGASF 1127

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
            TKWAIEYEEPAGEAF+ NHPE+ + ++NCNVIL+A+M+KCGDA DCVSTSEAAE AA L 
Sbjct: 1128 TKWAIEYEEPAGEAFRQNHPEAAVFVDNCNVILKAIMDKCGDASDCVSTSEAAEQAAKLA 1187

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
            E  I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FL
Sbjct: 1188 EENIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFL 1247

Query: 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL 1324
            LENVRNFVSFNKGQTFRL +ASLLEMGYQVRFGILEAG FGV+QSRKRAFIWAA+P + L
Sbjct: 1248 LENVRNFVSFNKGQTFRLAVASLLEMGYQVRFGILEAGTFGVAQSRKRAFIWAAAPGEIL 1307

Query: 1325 PEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            P+WPEPMHVFA+PELKI L D   Y+A +STA GAPFRA+TVRDTIGDLP V NGA+K I
Sbjct: 1308 PDWPEPMHVFASPELKITLPDGKYYAAAKSTAGGAPFRAITVRDTIGDLPKVENGANKLI 1367

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS 1444
            +EY  +P SWFQK+IRG+   L DHISKEMNELNLIRC+ IPKRPG DWHDLPDEKVKLS
Sbjct: 1368 LEYGGEPTSWFQKKIRGSTIALNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLS 1427

Query: 1445 TGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1504
            +GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+
Sbjct: 1428 SGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRII 1487

Query: 1505 TVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            TVRECARSQGFPDSYQF G+IQ KHRQIGNAVPP LAFALGRKLKEAV++KR
Sbjct: 1488 TVRECARSQGFPDSYQFAGTIQSKHRQIGNAVPPPLAFALGRKLKEAVDAKR 1539


>gi|414883787|tpg|DAA59801.1| TPA: cytosine-specific methyltransferase [Zea mays]
          Length = 1536

 Score = 1809 bits (4686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1523 (59%), Positives = 1122/1523 (73%), Gaps = 63/1523 (4%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPN- 112
            D    RKRP+R AAC+DFKEKS+R+SEK  +V  KK++  ++E+ AV LT     D P  
Sbjct: 48   DGHVTRKRPRRAAACSDFKEKSIRLSEKKSVVMVKKNRMEEEEVDAVNLTKLGPEDPPPC 107

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD  G PQP EM EIDD FI+ LI+P+ +  ++E+EKGVRCEGFGRIE W+I
Sbjct: 108  RKLIDFILHDAEGNPQPFEMSEIDDFFITALIMPMDDDLEKEREKGVRCEGFGRIEDWNI 167

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+PVIW+STD+ADY+C+KP+++YK Y++ F+EKA+ C+EV+KKL+K+ GGN +  
Sbjct: 168  SGYDEGTPVIWVSTDVADYECVKPSTNYKSYFDHFYEKAQVCVEVFKKLAKSVGGNPNQG 227

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            +DELLA VVRS +  K + G +S KD VIS GEF++NQL+GLDETS  +D+KFA LPVL+
Sbjct: 228  LDELLASVVRSTNAMKGYSGTMS-KDLVISIGEFVYNQLVGLDETSNNDDEKFATLPVLL 286

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            +L+++   R     V    L  N +  S K+ D +                  AKLARLL
Sbjct: 287  SLRDQCRSR-----VELTKLPSNFSNTSLKIKDSECDETAEDDDD--------AKLARLL 333

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  K+++ +  T      YIKI+E EIANDYP P +Y+P  +E DE +    D 
Sbjct: 334  QQEEEWKMMKKQRGRRGTPSQKNVYIKISEAEIANDYPLPAYYKPFSQEMDEYIFDSDDS 393

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
                 D +P R+L++W+LYN+DSRLISLEL+PMK   + DV +FGSG M  D+GS     
Sbjct: 394  IF--SDDVPVRILNNWTLYNADSRLISLELIPMKSGAENDVVVFGSGFMRDDDGSCCSTA 451

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
                  +S     Q   G PIYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 452  ESVKSSSSSSKADQLDAGIPIYLSPIKEWIIEFGGSMICITIRTDVAWYKLRQPTKQYAP 511

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+A+SIIT+LKEQ+R S+LSF DVI++++E  K   ++ISS+   VERY+V
Sbjct: 512  WCEPVLKTARLAVSIITLLKEQSRASKLSFADVIRKVAEFDKGNPAFISSNITLVERYIV 571

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ FA++PDE I++ AF+ GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 572  VHGQIILQQFADFPDETIRRSAFVSGLLLKMEQRRHTKLVMKKKTQVMRGE-NLNPSAAM 630

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDE------------- 697
            GP   S++K M+ATTTRLINRIW +YY+++ PED KE    E  E +             
Sbjct: 631  GPA--SRKKAMRATTTRLINRIWSDYYAHHFPEDSKEGDGNEIKEIDDEQEENEDEDAED 688

Query: 698  --EVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLAL 753
              ++EE        T   KL+S+                T KEI WEGE   K  SG  L
Sbjct: 689  EGQIEENISKTPPSTRSRKLLSQ----------------TCKEIRWEGETSGKTLSGETL 732

Query: 754  YKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLG 813
            YK A V    + +G  V +E D  D   V+ FVEYMF+   G K+ HG I+Q+GS T+L 
Sbjct: 733  YKCAYVRELRIPVGGTVALEDDSGDT--VMCFVEYMFQKVDGSKMVHGRILQKGSQTILD 790

Query: 814  NTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKK 873
            N ANEREVFL N C + +L DIK+ V+VDI+S PWGH++RK+ + ADKV++ +AEERKKK
Sbjct: 791  NAANEREVFLTNDCLEFKLDDIKELVMVDIQSRPWGHKYRKENSEADKVEQVKAEERKKK 850

Query: 874  GLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYG 933
            G P  Y+CKSLYWPE+GAFF L  D MGLG G C +C   E + ++   K+ SKTSFVY 
Sbjct: 851  GQPMVYFCKSLYWPEKGAFFALSRDKMGLGSGLCSSCDNIEPDSDE--LKIFSKTSFVYR 908

Query: 934  TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKST 993
               Y V++++YISP  F  D+    TFKAGRNVGLKPY VCQ+L I      K+    S 
Sbjct: 909  KVTYNVNEFLYISPDFFAEDEDRA-TFKAGRNVGLKPYAVCQILSIPEGAGSKKLNPASA 967

Query: 994  QVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI 1053
             +  RRF+RPDDIS+ KAY SDIREVYYSE+   + V+ I GKCEVRKKND+ + + P +
Sbjct: 968  NISARRFYRPDDISSAKAYASDIREVYYSEDVIDVPVDMIEGKCEVRKKNDLASSDLPVM 1027

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
            F+H+FFCE ++D + G+LKQLP +++       +   +A ++ KGK I   D+++  K  
Sbjct: 1028 FEHVFFCELIYDRASGALKQLPPNVRFM---SMVQRTSALKKNKGKQICEPDQIDSGKWL 1084

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
               +EN LATLDIFAGCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+++ ++NC
Sbjct: 1085 DVPKENRLATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFNKNHPEAVVFVDNC 1144

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            NVIL+A+M+KCGD +DCVSTSEAAE AA L E  INNLP+PG+V+FINGGPPCQGFSGMN
Sbjct: 1145 NVILKAIMDKCGDTDDCVSTSEAAEQAAKLPEVNINNLPVPGEVEFINGGPPCQGFSGMN 1204

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFNQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRL +ASLLEMGYQ
Sbjct: 1205 RFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLAVASLLEMGYQ 1264

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            VRFGILEAGAFGV+QSRKRAFIWAA+P + LP+WPEPMHVFA+PELKI L D   Y+A R
Sbjct: 1265 VRFGILEAGAFGVAQSRKRAFIWAAAPGEMLPDWPEPMHVFASPELKITLPDGQYYAAAR 1324

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
            STA GAPFRA+TVRDT+GDLP VGNGASK  +EY  +PVSWFQK+IRGNM VL DHISKE
Sbjct: 1325 STAGGAPFRAITVRDTVGDLPKVGNGASKLTLEYGGEPVSWFQKKIRGNMMVLNDHISKE 1384

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            MNELNLIRCQ IPKRPG DWHDLPDEKVKLS GQ+ DLIPWCLPNTAKRHNQWKGL+GRL
Sbjct: 1385 MNELNLIRCQHIPKRPGCDWHDLPDEKVKLSNGQMADLIPWCLPNTAKRHNQWKGLYGRL 1444

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
            DWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPDSY+F G+IQ+KHRQIG
Sbjct: 1445 DWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDSYEFAGNIQNKHRQIG 1504

Query: 1534 NAVPPTLAFALGRKLKEAVESKR 1556
            NAVPP LA+ALGRKLKEAV+ ++
Sbjct: 1505 NAVPPPLAYALGRKLKEAVDKRQ 1527


>gi|3132825|gb|AAC16389.1| putative cytosine-5 DNA methyltransferase [Zea mays]
          Length = 1525

 Score = 1808 bits (4682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1523 (59%), Positives = 1122/1523 (73%), Gaps = 63/1523 (4%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPN- 112
            D    RKRP+R AAC+DFKEKS+R+SEK  +V  KK++  ++E+ AV LT     D P  
Sbjct: 37   DGHVTRKRPRRSAACSDFKEKSIRLSEKKSVVMVKKNRMEEEEVDAVNLTKLGPEDPPPC 96

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD  G PQP EM EIDD FI+ LI+P+ +  ++E+E+GVRCEGFGRIE W+I
Sbjct: 97   RKLIDFILHDAEGNPQPFEMSEIDDFFITALIMPMDDDLEKERERGVRCEGFGRIEDWNI 156

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+PVIW+STD+ADY+C+KP+++YK Y++ F+EKA+ C+EV+KKL+K+ GGN +  
Sbjct: 157  SGYDEGTPVIWVSTDVADYECVKPSTNYKSYFDHFYEKAQVCVEVFKKLAKSVGGNPNQG 216

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            +DELLA VVRS +  K + G +S KD VIS GEF++NQL+GLDETS  +D+KFA LPVL+
Sbjct: 217  LDELLASVVRSTNAMKGYSGTMS-KDLVISIGEFVYNQLVGLDETSNNDDEKFATLPVLL 275

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            +L+++   R     V    L  N +  S K+ D +                  AKLARLL
Sbjct: 276  SLRDQCRSR-----VELTKLPSNFSNTSLKIKDSECDETAEDDDD--------AKLARLL 322

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  K+++ +  T      YIKI+E EIANDYP P +Y+P  +E DE +    D 
Sbjct: 323  QQEEEWKMMKKQRGRRGTPSQKNVYIKISEAEIANDYPLPAYYKPFSQEMDEYIFDSDDS 382

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
                 D +P R+L++W+LYN+DSRLISLEL+PMK   + DV +FGSG M  D+GS     
Sbjct: 383  IF--SDDVPVRILNNWTLYNADSRLISLELIPMKSGAENDVVVFGSGFMRDDDGSCCSTA 440

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
                  +S     Q   G PIYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 441  ESVKSSSSSSKADQLDAGIPIYLSPIKEWIIEFGGSMICITIRTDVAWYKLRQPTKQYAP 500

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+A+SIIT+LKEQ+R S+LSF DVI++++E  K   ++ISS+   VERY+V
Sbjct: 501  WCEPVLKTARLAVSIITLLKEQSRASKLSFADVIRKVAEFDKGNPAFISSNITLVERYIV 560

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ FA++PDE I++ AF+ GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 561  VHGQIILQQFADFPDETIRRSAFVSGLLLKMEQRRHTKLVMKKKTQVMRGE-NLNPSAAM 619

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDE------------- 697
            GP   S++K M+ATTTRLINRIW +YY+++ PED KE    E  E +             
Sbjct: 620  GPA--SRKKAMRATTTRLINRIWSDYYAHHFPEDSKEGDGNETKEIDDEQEENEDEDAED 677

Query: 698  --EVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLAL 753
              ++EE        T   KL+S+                T KEI WEGE   K  SG  L
Sbjct: 678  EGQIEENISKTPPSTRSRKLLSQ----------------TCKEIRWEGETSGKTLSGETL 721

Query: 754  YKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLG 813
            YK A V    + +G  V +E D  D   VI FVEYMF+   G K+ HG I+Q+GS T+LG
Sbjct: 722  YKCAYVRELRIPVGGTVALEDDSGDT--VICFVEYMFQKVDGSKMVHGRILQKGSQTILG 779

Query: 814  NTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKK 873
            N ANEREVFL N C + +L DIK+ V+VDI+S PWGH++RK+ + ADKV++ +AEERKKK
Sbjct: 780  NAANEREVFLTNDCLEFKLDDIKELVMVDIQSRPWGHKYRKENSEADKVEQVKAEERKKK 839

Query: 874  GLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYG 933
            G P  Y+CKSLYWPE+GAFF L  D MGLG G C +C   E + ++   K+ SKTSFVY 
Sbjct: 840  GQPMVYFCKSLYWPEKGAFFALSRDKMGLGSGLCSSCDNIEPDSDE--LKIFSKTSFVYR 897

Query: 934  TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKST 993
               Y V++++YI P  F  D+    TFKAGRNVGLKPY VCQ+L I      K+    S 
Sbjct: 898  KVTYNVNEFLYIRPDFFAEDEDRA-TFKAGRNVGLKPYAVCQILSIPEGAGSKKLNPASA 956

Query: 994  QVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI 1053
             +  RRF+RPDDIS+ KAY SDIREVYYSE+   + V+ I GKCEVRKKND+ + + P +
Sbjct: 957  NISARRFYRPDDISSAKAYASDIREVYYSEDVIDVPVDMIEGKCEVRKKNDLASSDLPVM 1016

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
            F+H+FFCE ++D + G+LKQLP +++       +   +A ++ KGK I   D+++  K  
Sbjct: 1017 FEHVFFCELIYDRASGALKQLPPNVRFM---SMVQRTSALKKNKGKQICEPDQIDSGKWL 1073

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
               +EN LATLDIFAGCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+++ ++NC
Sbjct: 1074 DVPKENRLATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFNKNHPEAVVFVDNC 1133

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            NVIL+A+M+KCGD +DCVSTSEAAE AA L E  INNLP+PG+V+FINGGPPCQGFSGMN
Sbjct: 1134 NVILKAIMDKCGDTDDCVSTSEAAEQAAKLPEVNINNLPVPGEVEFINGGPPCQGFSGMN 1193

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFNQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRL +ASLLEMGYQ
Sbjct: 1194 RFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLAVASLLEMGYQ 1253

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            VRFGILEAGAFGV+QSRKRAFIWAA+P + LP+WPEPMHVFA+PELKI L D   Y+A R
Sbjct: 1254 VRFGILEAGAFGVAQSRKRAFIWAAAPGEMLPDWPEPMHVFASPELKITLPDGQYYAAAR 1313

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
            STA GAPFRA+TVRDTIGDLP VGNGASK  +EY  +PVSWFQK+IRG+M VL DHISKE
Sbjct: 1314 STAGGAPFRAITVRDTIGDLPKVGNGASKLTLEYGGEPVSWFQKKIRGSMMVLNDHISKE 1373

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            MNELNLIRCQ IPKRPG DWHDLPDEKVKLS GQ+ DLIPWCLPNTAKRHNQWKGL+GRL
Sbjct: 1374 MNELNLIRCQHIPKRPGCDWHDLPDEKVKLSNGQMADLIPWCLPNTAKRHNQWKGLYGRL 1433

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
            DWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPDSY+F G+IQ+KHRQIG
Sbjct: 1434 DWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDSYEFAGNIQNKHRQIG 1493

Query: 1534 NAVPPTLAFALGRKLKEAVESKR 1556
            NAVPP LA+ALGRKLKEAV+ ++
Sbjct: 1494 NAVPPPLAYALGRKLKEAVDKRQ 1516


>gi|218199194|gb|EEC81621.1| hypothetical protein OsI_25142 [Oryza sativa Indica Group]
          Length = 1538

 Score = 1801 bits (4666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 894/1508 (59%), Positives = 1146/1508 (75%), Gaps = 52/1508 (3%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPN 112
            DS    KRP+R AAC+DFKEKSVR+S+KS +V    ++  ++E+ AV LT    +  RP 
Sbjct: 77   DSRAACKRPRRAAACSDFKEKSVRLSDKSSVVATNGNKMEEEEMDAVKLTKLGPEVQRPC 136

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD +G  QP EM EIDD FI+ LI+P+ +  +++++KGVRCEGFGRIE W+I
Sbjct: 137  RKLIDFILHDADGKLQPFEMSEIDDFFITALIMPMDDDLEKDRQKGVRCEGFGRIEDWAI 196

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+ V+W+ST++ADY+C+KPA +YK YY+ F+EKA+ C+EVY+KL+++ GGN +  
Sbjct: 197  SGYDEGTAVVWVSTEVADYECVKPAGNYKSYYDHFYEKAQVCVEVYRKLARSVGGNPNLG 256

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            ++ELLA VVRS++  K + G +S KDFVIS GEF++NQLIGLDET+  +D+KFA LPVL+
Sbjct: 257  LEELLASVVRSINAIKGYSGTLS-KDFVISNGEFVYNQLIGLDETANTDDEKFATLPVLL 315

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            AL++    R     V  + L  N++ GS K+ D + K            ED+D KLARLL
Sbjct: 316  ALRDGCKSR-----VEVSKLQPNISNGSLKINDAECK---------EVSEDDDEKLARLL 361

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  KQ+  +G+TS  N  YIKI+E EIANDYP P +Y+PS +E DE + +DS+ 
Sbjct: 362  QQEEEWKMMKQRGKRGTTSQKN-VYIKISEAEIANDYPLPAYYKPSSQEMDEYI-FDSE- 418

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
            DS   D +P R+L++W+LYN+DSRLI LEL+PMK   + D+ +FGSG M  D+GS  C  
Sbjct: 419  DSFYSD-VPVRILNNWALYNADSRLIPLELIPMKAGAENDIVVFGSGFMREDDGS-CCST 476

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
             +S++ +S  S      G  IYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 477  AESAKLSSSSSSNHQDAGVSIYLSPIKEWVIEFGGSMICITIRTDVAWYKLRQPTKQYAP 536

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+++SIIT+LKEQ+R S+LSF DVIK+++E  K   +++SS+ A VERYVV
Sbjct: 537  WCEPVLKTARLSVSIITLLKEQSRASKLSFADVIKKVAEFDKGSPAFVSSNVALVERYVV 596

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ F+++PDE I++ AF  GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 597  VHGQIILQQFSDFPDETIRRSAFATGLLMKMEQRRHTKLVMKKKVQVMRGE-NLNPSATM 655

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDT 710
            GP   S+RKVM+ATTTRLINRIW +YY+++ PED K+  A EA E ++  E+ E+E+ + 
Sbjct: 656  GPA--SRRKVMRATTTRLINRIWSDYYAHHFPEDSKDADANEAKEIDDELEENEDEDAEE 713

Query: 711  EEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGS 768
            E +       +   S   +     T KEI WEGE + K  SG ALYK A V    +++G 
Sbjct: 714  EAQIEEENVSKTPPSTRSRKLVSQTCKEIRWEGEAIGKTPSGEALYKCAYVRELRINVGR 773

Query: 769  AVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCR 828
             V +E D+  +L V+ FVEYMF+   G K+ HG                 R++ L N+C 
Sbjct: 774  TVALE-DDSGEL-VMCFVEYMFQKLNGAKMVHG-----------------RDLLLTNECL 814

Query: 829  DLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPE 888
            + EL+DIK+ + V+++S+PWGH++RK+ A AD+++RA+AE+RKKKGLP EY CKSLYWPE
Sbjct: 815  EFELEDIKELISVNLQSLPWGHKYRKENAEADRIERAKAEDRKKKGLPMEYLCKSLYWPE 874

Query: 889  RGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPH 948
            +GAFF LP D +GLG G C +C  KE + ++   ++ SK SF+Y    Y V+DY+YI P 
Sbjct: 875  KGAFFSLPHDKLGLGNGFCSSCQQKEPDCDE--LQILSKNSFIYRNITYNVNDYLYIRPE 932

Query: 949  HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
             F+ ++    TFK GRNVGLKPYVVC LL++  P   ++    ST++ VRRF+RPDDIS+
Sbjct: 933  FFSQEEDRA-TFKGGRNVGLKPYVVCHLLDVHEPAGSRKIHPASTKISVRRFYRPDDISS 991

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
             KAY SDIREVYYSE    + V+ I GKCEV+KK DI   + P + +H FFCEH +DP+ 
Sbjct: 992  AKAYVSDIREVYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVEHEFFCEHFYDPAT 1051

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            G+LKQLP ++KL   S    +  A ++ KGK I   D+++ +K    S+EN LATLDIFA
Sbjct: 1052 GALKQLPPNVKLM--SVQQKATGALKKNKGKQICESDQVDSDKCTKVSKENRLATLDIFA 1109

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLS+GLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNVIL+A+M+KCGDA+
Sbjct: 1110 GCGGLSQGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDAD 1169

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMI
Sbjct: 1170 DCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMI 1229

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILEAG FGV+Q
Sbjct: 1230 LAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQ 1289

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +STA GAPFRA+TVRD
Sbjct: 1290 SRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRD 1349

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DH+SKEMNELNLIRCQ+IPKR
Sbjct: 1350 TIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHVSKEMNELNLIRCQRIPKR 1409

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            PG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQP
Sbjct: 1410 PGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQP 1469

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNAVPP LAFALGRKL
Sbjct: 1470 MGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKL 1529

Query: 1549 KEAVESKR 1556
            KEAV++KR
Sbjct: 1530 KEAVDAKR 1537


>gi|297800866|ref|XP_002868317.1| hypothetical protein ARALYDRAFT_355413 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297314153|gb|EFH44576.1| hypothetical protein ARALYDRAFT_355413 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1506

 Score = 1790 bits (4635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1538 (58%), Positives = 1134/1538 (73%), Gaps = 57/1538 (3%)

Query: 39   DSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIV 98
            DS +G K+K + +  D     +RPKR AACT+FKEK +RISEKS  VEAKK+Q   +EIV
Sbjct: 2    DSKAG-KQKKRSVDSDDVSSERRPKRAAACTNFKEKPLRISEKSATVEAKKEQIVVEEIV 60

Query: 99   AVGLTA----RQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDRE 154
            A+ LT+      D  RPNRRL DF+LHD +G+ QP+EMLE+ D+FI G++LPL +  D++
Sbjct: 61   AIKLTSSLESNDDQPRPNRRLTDFVLHDSDGVLQPVEMLELGDIFIEGVVLPLGD--DKK 118

Query: 155  KEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
            +E GVR + FGR+E+W+ISGYEDGSPVIW+ST +ADYDC KPASSYKK Y+ FFEKA AC
Sbjct: 119  EENGVRFQSFGRVENWNISGYEDGSPVIWISTALADYDCRKPASSYKKMYDYFFEKACAC 178

Query: 215  IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
            + VY  LSK    N D S+DELLA VVRSM G+K F  G +I++FVISQGEFI+NQL GL
Sbjct: 179  VAVYTNLSK----NPDTSLDELLAAVVRSMIGNKFFSSGAAIQEFVISQGEFIYNQLAGL 234

Query: 275  DETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG-SKVGDGDGKMDQYG 333
            DET+  ++  F E PVLV+L++  S + +    N A     L I  SK    D  MD   
Sbjct: 235  DETANNHETSFVENPVLVSLRDRGSSKLHKALSNVA-----LEIDESKAVTSDQLMD--- 286

Query: 334  SSTCPADEDEDAKLARLLQEEE--LWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFP 391
                   EDED K A+L+QEEE  +   +++ K   +TS   KFYIKINEDEIA+DYP P
Sbjct: 287  -----GAEDEDVKYAKLIQEEEYRISMERERNKRSSTTSASKKFYIKINEDEIAHDYPLP 341

Query: 392  VFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDID 451
             +Y+ ++EE DELL +++ Y+  D   LP + LH+W+LYNSDSR ISLELLPMK C+DID
Sbjct: 342  YYYKNTKEETDELLLFEAGYE-VDTRDLPYKTLHNWALYNSDSRFISLELLPMKQCDDID 400

Query: 452  VTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFI 511
            VT+FGSG +  D+GSGFCLD   S   S      D  G  I+LS IKEW+IEFG+ M+F+
Sbjct: 401  VTVFGSGVVAEDDGSGFCLDDTESSTQS-----NDPDGMNIFLSQIKEWVIEFGAEMVFV 455

Query: 512  SIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEI 571
            ++RTD+AWYRLGKPSKQYAPW+  V+KT RVAISI  ML  ++RV++LS+ DVIKRLS +
Sbjct: 456  TLRTDMAWYRLGKPSKQYAPWFATVMKTVRVAISIFNMLMMESRVAKLSYADVIKRLSGL 515

Query: 572  KKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWL 631
            +++  +YISSD   VERYVVVHGQI+LQLF EYPD+ IK+C F+ GL  KM++  HTKW+
Sbjct: 516  EENDKAYISSDLLEVERYVVVHGQIILQLFEEYPDKDIKRCPFVTGLASKMQDMRHTKWI 575

Query: 632  VKKKKVQKSE-INLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETA 690
            + KKK    + +NLNPR  M PVV S+ K MQATTTRL+NRIWGE+YS YSPED  E   
Sbjct: 576  INKKKKILQKGMNLNPRRGMAPVV-SRMKAMQATTTRLVNRIWGEFYSIYSPEDSLEAV- 633

Query: 691  CEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKK--------EITWE 742
                 DE V E+   E ++ +E++    E  +  +V VQ KS + KK        EI W+
Sbjct: 634  -----DENVGEEELEEVEEEDEDEEDDTEENVLDAVEVQ-KSHTPKKSKASSEEMEIEWD 687

Query: 743  GECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFH 800
            G  + K+  G  LY +A+V G+VV++GSAV++EVD+ D+ PVIYFVEYMFE+   CK+ H
Sbjct: 688  GGIIGKTSAGEPLYGRALVGGDVVAVGSAVILEVDDPDETPVIYFVEYMFESLDHCKMLH 747

Query: 801  GIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANAD 860
            G  +QRGS TVLG  ANERE+FL N+C  ++L+DIK  V ++IRS  WGHQ+RK+    D
Sbjct: 748  GKFLQRGSETVLGIAANERELFLTNECITVQLKDIKGIVSLEIRSGQWGHQYRKENIVVD 807

Query: 861  KVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKE 920
            K+DRARAEERK K LPTEYYCK LY PERG FF LP   MGLG G C +C  +E E+E+ 
Sbjct: 808  KLDRARAEERKAKDLPTEYYCKILYSPERGGFFSLPRSDMGLGSGFCSSCKIREDEEERS 867

Query: 921  TFKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEI 979
              K++ SK  F+    EY   D+VY+ P++   D     +FK  +NVGL+ +VVCQL++I
Sbjct: 868  KTKLNDSKRGFLSNGIEYSSEDFVYVIPNYINEDGKRRPSFKYSQNVGLQAFVVCQLVDI 927

Query: 980  IVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV 1039
            IV  EPK+    S +V +RRF+RP+DIS EKAY SDI+EVYYS++T+++  +AI GKCEV
Sbjct: 928  IVLTEPKKGSKASFEVNLRRFYRPEDISVEKAYASDIQEVYYSKDTYVLPPDAIKGKCEV 987

Query: 1040 RKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGK 1099
            RKK D+P C    +  HIFFCE  +D S G LKQLP+++KL++S+  +  +   R KKGK
Sbjct: 988  RKKTDMPLCREYPVLDHIFFCELFYDSSNGYLKQLPSNMKLKFST--IKDDKLLREKKGK 1045

Query: 1100 CIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159
             +E E   +  K   A +E  LATLDIFAGCGGLS GL+++G+S TKWAIEYEEPA +AF
Sbjct: 1046 GVESE--TDSVKPDEAPKEMRLATLDIFAGCGGLSYGLEKAGVSDTKWAIEYEEPAAQAF 1103

Query: 1160 KLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDF 1219
            K NHP++ + ++NCNVILRA+MEK GD +DC+ST+EAAELAA LDEN  + LPLPGQVDF
Sbjct: 1104 KQNHPDATVFVDNCNVILRAIMEKGGDVDDCISTTEAAELAAKLDENQKSTLPLPGQVDF 1163

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            INGGPPCQGFSGMNRF+  +WSKVQCEMILAFLSFADYF+P+YFLLENV+  VSFN GQT
Sbjct: 1164 INGGPPCQGFSGMNRFSDRSWSKVQCEMILAFLSFADYFRPKYFLLENVKKIVSFNNGQT 1223

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
            F+LT+ASLLEMGYQVRFG+LEAGA+G+SQ RKRAFIWAA+P++ LPEWPEPMHVF  P  
Sbjct: 1224 FQLTIASLLEMGYQVRFGLLEAGAYGISQPRKRAFIWAAAPNEVLPEWPEPMHVFNNPGF 1283

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
            KI LS     +AV +T +GAPFR++TVRDTIGDLP V NG S+   +Y++ PVSWFQK +
Sbjct: 1284 KISLSRGLHCAAVHNTKSGAPFRSITVRDTIGDLPPVENGESEINKKYKDVPVSWFQKEM 1343

Query: 1400 RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
            RGNM VLTDHI K+MNELNLIRC+K+PKRPGA W DLPDE V LS G V  L+P+ + N 
Sbjct: 1344 RGNMTVLTDHICKQMNELNLIRCKKVPKRPGASWRDLPDENVILSNGLVEKLVPFAMSNK 1403

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
            A   N++KGL+GRLDW+GNFPTSITDPQPMG VG+CFHPDQDRI+T+RECARSQGFPDSY
Sbjct: 1404 ANEQNRYKGLYGRLDWQGNFPTSITDPQPMGFVGVCFHPDQDRIITIRECARSQGFPDSY 1463

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            +F G  + KHRQIGNAVPP LAFALGRKLKEA+  K S
Sbjct: 1464 EFSGKKKDKHRQIGNAVPPPLAFALGRKLKEALYLKIS 1501


>gi|15236676|ref|NP_192638.1| DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|7267541|emb|CAB78023.1| Met2-type cytosine DNA-methyltransferase-like protein [Arabidopsis
            thaliana]
 gi|332657308|gb|AEE82708.1| DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
          Length = 1512

 Score = 1783 bits (4617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1531 (58%), Positives = 1129/1531 (73%), Gaps = 45/1531 (2%)

Query: 43   GQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGL 102
            G+++K    S D     +RPKR AAC +FKEK +RIS+KS  VEAKK+Q   +EIVA+ L
Sbjct: 6    GKQKKRSVDSNDDVSKERRPKRAAACRNFKEKPLRISDKSETVEAKKEQNVVEEIVAIQL 65

Query: 103  TAR---QDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGV 159
            T+     D  RPNRRL DF+LH+ +G+PQP+EMLE+ D+F+ G++LPL +  D+ +EKGV
Sbjct: 66   TSSLESNDDPRPNRRLTDFVLHNSDGVPQPVEMLELGDIFLEGVVLPLGD--DKNEEKGV 123

Query: 160  RCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYK 219
            R + FGR+E+W+ISGYEDGSP IW+ST +ADYDC KPAS YKK Y+ FFEKA AC+EV+K
Sbjct: 124  RFQSFGRVENWNISGYEDGSPGIWISTALADYDCRKPASKYKKIYDYFFEKACACVEVFK 183

Query: 220  KLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSK 279
             LSK    N D S+DELLA V RSMSGSK F  G +I++FVISQGEFI+NQL GLDET+K
Sbjct: 184  SLSK----NPDTSLDELLAAVARSMSGSKIFSSGGAIQEFVISQGEFIYNQLAGLDETAK 239

Query: 280  KNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG-SKVGDGDGKMDQYGSSTCP 338
             ++  F E  VLV+L++  S + +    N A     L I  S++   D  +D        
Sbjct: 240  NHETCFVENSVLVSLRDHESSKIHKALSNVA-----LRIDESQLVKSDHLVD-------- 286

Query: 339  ADEDEDAKLARLLQEEE--LWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRP 396
              E ED + A+L+QEEE  +   + + K   +TS  NKFYIKINE EIANDYP P +Y+ 
Sbjct: 287  GAEAEDVRYAKLIQEEEYRISMERSRNKRSSTTSASNKFYIKINEHEIANDYPLPSYYKN 346

Query: 397  SEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFG 456
            ++EE DELL ++  Y+  D   LP R LH+W+LYNSDSR+ISLE+LPM+PC +IDVT+FG
Sbjct: 347  TKEETDELLLFEPGYE-VDTRDLPCRTLHNWALYNSDSRMISLEVLPMRPCAEIDVTVFG 405

Query: 457  SGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTD 516
            SG +  D+GSGFCLD DS   TS  S   D  G  I+LS IKEWMIEFG+ MIF+++RTD
Sbjct: 406  SGVVAEDDGSGFCLD-DSESSTSTQSNVHD--GMNIFLSQIKEWMIEFGAEMIFVTLRTD 462

Query: 517  LAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQH 576
            +AWYRLGKPSKQYAPW+E V+KT RVAISI  ML  ++RV++LS+ +VIKRL  ++++  
Sbjct: 463  MAWYRLGKPSKQYAPWFETVMKTVRVAISIFNMLMRESRVAKLSYANVIKRLCGLEENDK 522

Query: 577  SYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKK 636
            +YISS    VERYVVVHGQI+LQLF EYPD+ IK+C F+ GL  KM++ HHTKW++K+KK
Sbjct: 523  AYISSKLLDVERYVVVHGQIILQLFEEYPDKDIKRCPFVTGLASKMQDIHHTKWIIKRKK 582

Query: 637  VQKSE-INLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANE 695
                +  NLNPRA +  VV ++ K MQATTTRL+NRIWGE+YS YSPE   E       E
Sbjct: 583  KILQKGKNLNPRAGLAHVV-TRMKPMQATTTRLVNRIWGEFYSIYSPEVPSEAIHEVEEE 641

Query: 696  DEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKS--GLAL 753
            + E +E+ +  E+D  EE+ +  ++        + +  S   EI W GE + ++  G  L
Sbjct: 642  EIEEDEEEDENEEDDIEEEAVEVQKS---HTPKKSRGNSEDMEIKWNGEILGETSDGEPL 698

Query: 754  YKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLG 813
            Y +A+V GE V++GSAV++EVD+ D+ P IYFVE+MFE++  CK+ HG ++QRGS TV+G
Sbjct: 699  YGRALVGGETVAVGSAVILEVDDPDETPAIYFVEFMFESSDQCKMLHGKLLQRGSETVIG 758

Query: 814  NTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKK 873
              ANERE+FL N+C  + L+DIK TV +DIRS PWGHQ+RK+    DK+DRARAEERK  
Sbjct: 759  TAANERELFLTNECLTVHLKDIKGTVSLDIRSRPWGHQYRKENLVVDKLDRARAEERKAN 818

Query: 874  GLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVY 932
            GLPTEYYCKSLY PERG FF LP + +GLG G C +C  KE E+E+   K++ SKT    
Sbjct: 819  GLPTEYYCKSLYSPERGGFFSLPRNDIGLGSGFCSSCKIKEEEEERSKTKLNISKTGVFS 878

Query: 933  GTAEYFVHDYVYISPHHFTWD-----KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKR 987
               EY+  D+VY+ P++ T D      +   T K GRNVGLK +VVCQLL++IV +E ++
Sbjct: 879  NGIEYYNGDFVYVLPNYITKDGLKKGTSRRTTLKCGRNVGLKAFVVCQLLDVIVLEESRK 938

Query: 988  AEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPA 1047
            A   S QVK+ RF+RP+DIS EKAY SDI+E+YYS +T+++  EA+ GKCEVRKKND+P 
Sbjct: 939  ASNASFQVKLTRFYRPEDISEEKAYASDIQELYYSHDTYILPPEALQGKCEVRKKNDMPL 998

Query: 1048 CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIE-GEDE 1106
            C    I  HIFFCE  +D S G LKQ PA++KL++S+  +  E   R KKGK +E G   
Sbjct: 999  CREYPILDHIFFCEVFYDSSTGYLKQFPANMKLKFST--IKDETLLREKKGKGVETGTSS 1056

Query: 1107 LEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166
              + K     +E  LATLDIFAGCGGLS GL+++G+S+TKWAIEYEEPAG AFK NHPE+
Sbjct: 1057 GILMKPDEVPKEMRLATLDIFAGCGGLSHGLEKAGVSNTKWAIEYEEPAGHAFKQNHPEA 1116

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPC 1226
             + ++NCNVILRA+MEKCGD +DCVST EAAEL A LDEN  + LPLPGQ DFI+GGPPC
Sbjct: 1117 TVFVDNCNVILRAIMEKCGDVDDCVSTVEAAELVAKLDENQKSTLPLPGQADFISGGPPC 1176

Query: 1227 QGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            QGFSGMNRF+  +WSKVQCEMILAFLSFADYF+P+YFLLENV+ FV++NKG+TF+LT+AS
Sbjct: 1177 QGFSGMNRFSDGSWSKVQCEMILAFLSFADYFRPKYFLLENVKKFVTYNKGRTFQLTMAS 1236

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDN 1346
            LLE+GYQVRFGILEAG +GVSQ RKR  IWAASP + LPEWPEPMHVF  P  KI L   
Sbjct: 1237 LLEIGYQVRFGILEAGTYGVSQPRKRVIIWAASPEEVLPEWPEPMHVFDNPGSKISLPRG 1296

Query: 1347 YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVL 1406
              Y  VR+T  GAPFR++TVRDTIGDLP V NG SK   EY+  PVSWFQK+IRGNM+VL
Sbjct: 1297 LHYDTVRNTKFGAPFRSITVRDTIGDLPLVENGESKINKEYRTTPVSWFQKKIRGNMSVL 1356

Query: 1407 TDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQW 1466
            TDHI K +NELNLIRC+KIPKRPGADW DLPDE V LS G V  L P  L  TAK HN+W
Sbjct: 1357 TDHICKGLNELNLIRCKKIPKRPGADWRDLPDENVTLSNGLVEKLRPLALSKTAKNHNEW 1416

Query: 1467 KGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
            KGL+GRLDW+GN P SITDPQPMGKVGMCFHP+QDRI+TVRECARSQGFPDSY+F G+ +
Sbjct: 1417 KGLYGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYEFSGTTK 1476

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            HKHRQIGNAVPP LAFALGRKLKEA+  K S
Sbjct: 1477 HKHRQIGNAVPPPLAFALGRKLKEALYLKSS 1507


>gi|116062016|dbj|BAF34636.1| DNA methyltransferase 1b [Brassica rapa]
          Length = 1519

 Score = 1764 bits (4570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1549 (58%), Positives = 1131/1549 (73%), Gaps = 58/1549 (3%)

Query: 20   SSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRIS 79
            S   K KKR     +PE+K++             D    + RPKR AACT+FKEKS+RIS
Sbjct: 6    SKAAKQKKR----SLPESKETDH---------DDDLSTRKTRPKRAAACTNFKEKSIRIS 52

Query: 80   EKSYLVEAKKDQYADDEIVAVGLTARQ----DGDRPN--RRLNDFILHDENGLPQPLEML 133
            EKS  V AK  Q  DDEIVA+ LTA       G  P+  RRL DF+LHD +G+ Q +EM+
Sbjct: 53   EKSATVAAKHHQTVDDEIVALHLTASSPQSGGGHEPHQTRRLTDFVLHDTDGVSQAVEMV 112

Query: 134  EIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDC 193
            E  D+FI+G+ILP  E SD+E+ KGVRCEGFGR+++WSISGYEDGSPV+W++T +ADY+C
Sbjct: 113  EHVDMFITGVILPTGECSDKERAKGVRCEGFGRVDNWSISGYEDGSPVVWVTTSLADYEC 172

Query: 194  LKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDC-SIDELLAGVVRSMS-GSKCFR 251
            +KPA++YKK Y+ FF+KA A +EVYKK++     NSD  S+DELL  V R+MS  +KCF 
Sbjct: 173  VKPATTYKKVYDYFFQKAYASVEVYKKVA-----NSDLMSLDELLVAVARAMSLETKCFS 227

Query: 252  GG-VSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAA 310
               ++IK+FVISQGEFI+NQL GLD+T+KK+D +F E+PVLVAL++ SS   + ++ +A 
Sbjct: 228  SDYLAIKNFVISQGEFIYNQLAGLDDTAKKDDARFVEIPVLVALRDASS--SSILEYDAG 285

Query: 311  S-LGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQS-KKQKKTQGS 368
                G L I       DG  ++   S+     DED K ARL+Q+EE  +S ++ +K+  S
Sbjct: 286  QPSNGVLRI-------DGAAERKAMSSDQHMVDEDEKFARLVQDEEYMKSMQRPRKSSSS 338

Query: 369  TSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWS 428
             S     YI   EDEIANDYP P  Y+ S+ E DELL Y  D    DID LPR+ML +W+
Sbjct: 339  ASVSKNGYIMTTEDEIANDYPLPAHYKNSQVETDELLLYHDDDYEVDIDDLPRKMLQNWA 398

Query: 429  LYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAG 488
            LY+ DSRLISLELLPMK C DIDVTIFGSG M  D+G    LD  ++   S     ++  
Sbjct: 399  LYDIDSRLISLELLPMKTCADIDVTIFGSGVMADDQGIWIDLDDPATSMPS-----EEHA 453

Query: 489  GFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIIT 548
            G PI+LS IKEWMIE+G S + +SIRTD AWYRLGKPSKQYAPW+EP+LKTARVA+ +  
Sbjct: 454  GIPIFLSQIKEWMIEYGVSTVSVSIRTDAAWYRLGKPSKQYAPWFEPILKTARVAVGVFA 513

Query: 549  MLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQ 608
            +L+EQTR+++LSF DV++R+ E + +  +YISSD AAV+RYVV HGQI+LQ+F+E+P+++
Sbjct: 514  LLEEQTRMAKLSFEDVVRRVCEFESNHKAYISSDRAAVDRYVVGHGQIILQMFSEFPNKE 573

Query: 609  IKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRL 668
            I++CAFI GL  K  E+H+T+W   KKK    ++NLNPRA + PV  SKRK MQATTTRL
Sbjct: 574  IRRCAFITGLANKRAEKHNTRW-TIKKKKILLKVNLNPRAGVAPV--SKRKAMQATTTRL 630

Query: 669  INRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISC-SVA 727
            INRIWGE+YS YSPE+  +    E   +E+ EE  E  EDD  EE            ++ 
Sbjct: 631  INRIWGEFYSIYSPEEPLQAVGAEEEAEEDEEEDEEENEDDEAEETEPEAAEVEEAHTLP 690

Query: 728  VQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYF 785
             +I  +  K E  W+GE V ++  G  LY++A++ GE V++G AV+ EV        IYF
Sbjct: 691  KKIVGKCGKMETRWDGESVGRTSAGEPLYRQALLEGERVAVGGAVIAEVSGSQ---AIYF 747

Query: 786  VEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRS 845
            VEYMFE++  CK+ HG ++QRGS TVL NTANERE+FL N+C  ++ +D+K TV  +IR+
Sbjct: 748  VEYMFESSDHCKMLHGRLLQRGSETVLENTANERELFLTNKCMTVQFKDVKGTVCFEIRT 807

Query: 846  VPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVG 905
             PWGHQ RK+ A ADK+DRARAEERK K LPTEY+CKSLY PERG FF LP+  MG   G
Sbjct: 808  RPWGHQFRKEDAVADKLDRARAEERKAKDLPTEYFCKSLYSPERGGFFSLPLSDMGCASG 867

Query: 906  SCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGR 964
            SC +C  +E E E++ FK++ SKT F     +Y   D+VY+ P      K     FK GR
Sbjct: 868  SCTSCRLREDEVERKKFKLNASKTGFSSYGVDYCADDFVYVYPDCIDGSKKANGKFKPGR 927

Query: 965  NVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEE 1024
            N+GL+ +VVCQL+EIIVPK+ ++    S +V VRRF+RP+D+S  KAY SDIREVYYSE+
Sbjct: 928  NIGLRAFVVCQLVEIIVPKKSRKG---SFEVNVRRFYRPEDVSERKAYASDIREVYYSED 984

Query: 1025 THLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSS 1084
            T ++  EA+ GKCEVRKK D+P+C+   I ++IFFCE ++DPSKGS+KQLP   K +YS+
Sbjct: 985  TFVVQPEALKGKCEVRKKKDMPSCSEFPISENIFFCEQIYDPSKGSVKQLPLSTKPKYST 1044

Query: 1085 GSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS 1144
              +  +A  R+KKGK +E E    + K     +E  LATLDIFAGCGGLS+GL+Q+G+S+
Sbjct: 1045 --VKDDALLRKKKGKGVESETGSGIVKPDELPKEMRLATLDIFAGCGGLSQGLEQAGVSA 1102

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
            TKWAIEYE PAGEAF+ NHPE+ ++++NCNV LRA+MEKCGD ++C+ST+EA ELAA LD
Sbjct: 1103 TKWAIEYEGPAGEAFRKNHPETTVIVDNCNVTLRAIMEKCGDQDECISTTEANELAAKLD 1162

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
            EN    LPLPGQVDFINGGPPCQGFSGMNRF+QS WSK+QC+M+LAFLSF DYF+PRYFL
Sbjct: 1163 ENQKRTLPLPGQVDFINGGPPCQGFSGMNRFSQSPWSKIQCQMVLAFLSFVDYFRPRYFL 1222

Query: 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL 1324
            LENVRNFVS++KGQ F+LTLASLLEMGYQVRFG+LEAGA+GVSQSRKRAFIWAA+P + L
Sbjct: 1223 LENVRNFVSYSKGQMFKLTLASLLEMGYQVRFGVLEAGAYGVSQSRKRAFIWAAAPEEVL 1282

Query: 1325 PEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            PEWPEPMHVF   +L I LS   +Y+AVRST  GAPFR +TVRDTIGDLP V NG S   
Sbjct: 1283 PEWPEPMHVFNVSQLNISLSKGLRYAAVRSTQQGAPFRPITVRDTIGDLPPVENGESNID 1342

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS 1444
             EY+ DPVSWFQK IRGN  V TDH+S+ MNE NLIRC++IPKR GADW DLPDEKV LS
Sbjct: 1343 KEYETDPVSWFQKEIRGNKNVPTDHLSQTMNEHNLIRCKRIPKRSGADWRDLPDEKVTLS 1402

Query: 1445 TGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1504
            TG VVDLIP CL     +  QWKGLFGRLDWEGNFPT +T P PMG VG CFHPDQDRI+
Sbjct: 1403 TGLVVDLIPGCLAAKPGKKKQWKGLFGRLDWEGNFPTCVTKPGPMGMVGKCFHPDQDRIV 1462

Query: 1505 TVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            TVRECARSQGFPDSY+F G I HKHRQIGNAVPP LAFALGRKLKEAV+
Sbjct: 1463 TVRECARSQGFPDSYEFEGDIAHKHRQIGNAVPPPLAFALGRKLKEAVQ 1511


>gi|162463699|ref|NP_001105186.1| DNA methyl transferase1 [Zea mays]
 gi|20977598|gb|AAM28226.1| DNA methyltransferase 101 [Zea mays]
          Length = 1457

 Score = 1764 bits (4569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 877/1490 (58%), Positives = 1096/1490 (73%), Gaps = 63/1490 (4%)

Query: 87   AKKDQYADDEIVAVGLTARQDGDRPN-RRLNDFILHDENGLPQPLEMLEIDDLFISGLIL 145
             KK++  ++E+ AV LT     D P  R+L DFILHD  G PQP EM EIDD FI+ LI+
Sbjct: 2    VKKNRMEEEEVDAVNLTKLGPEDPPPCRKLIDFILHDAEGNPQPFEMSEIDDFFITALIM 61

Query: 146  PLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYE 205
            P+ +  ++E+E+GVRCEGFGRIE W+ISGY++G+PVIW+STD+ADY+C+KP+++YK Y++
Sbjct: 62   PMDDDLEKERERGVRCEGFGRIEDWNISGYDEGTPVIWVSTDVADYECVKPSTNYKSYFD 121

Query: 206  LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGE 265
             F+EKA+ C+EV+KKL+K+ GGN +  +DELLA VVRS +  K + G +S KD VIS GE
Sbjct: 122  HFYEKAQVCVEVFKKLAKSVGGNPNQGLDELLASVVRSTNAMKGYSGTMS-KDLVISIGE 180

Query: 266  FIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGS-KVGD 324
            F++NQL+GLDETS  +D+KFA LPVL++L+++   R     V    L  N +  S K+ D
Sbjct: 181  FVYNQLVGLDETSNNDDEKFATLPVLLSLRDQCRSR-----VELTKLPSNFSNTSLKIKD 235

Query: 325  GDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEI 384
             +                  AKLARLLQ+EE W+  K+++ +  T      YIKI+E EI
Sbjct: 236  SECDETAEDDDD--------AKLARLLQQEEEWKMMKKQRGRRGTPSQKNVYIKISEAEI 287

Query: 385  ANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPM 444
            ANDYP P +Y+P  +E DE +    D      D +P R+L++W+LYN+DSRLISLEL+PM
Sbjct: 288  ANDYPLPAYYKPFSQEMDEYIFDSDDSIF--SDDVPVRILNNWTLYNADSRLISLELIPM 345

Query: 445  KPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF 504
            K   + DV +FGSG M  D+GS           +S     Q   G PIYLS IKEW+IEF
Sbjct: 346  KSGAENDVVVFGSGFMRDDDGSCCSTAESVKSSSSSSKADQLDAGIPIYLSPIKEWIIEF 405

Query: 505  GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDV 564
            G SMI I+IRTD+AWY+L +P+KQYAPW EPVLKTAR+A+SIIT+LKEQ+R S+LSF DV
Sbjct: 406  GGSMICITIRTDVAWYKLRQPTKQYAPWCEPVLKTARLAVSIITLLKEQSRASKLSFADV 465

Query: 565  IKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEE 624
            I++++E  K   ++ISS+   VERY+VVHGQI+LQ FA++PDE I++ AF+ GL+ KME+
Sbjct: 466  IRKVAEFDKGNPAFISSNITLVERYIVVHGQIILQQFADFPDETIRRSAFVSGLLLKMEQ 525

Query: 625  RHHTKWLVKKK-KVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPE 683
            R HTK ++KKK +V + E NLNP A+MGP   S++K M+ATTTRLINRIW +YY+++ PE
Sbjct: 526  RRHTKLVMKKKTQVMRGE-NLNPSAAMGPA--SRKKAMRATTTRLINRIWSDYYAHHFPE 582

Query: 684  DGKEETACEANEDE---------------EVEEQGENEEDDTEEEKLISEERQISCSVAV 728
            D KE    E  E +               ++EE        T   KL+S+          
Sbjct: 583  DSKEGDGNEIKEIDDEQEENEDEDAEDEGQIEENISKTPSSTRSRKLLSQ---------- 632

Query: 729  QIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFV 786
                  T KEI WEGE   K  SG  LYK A V    + +G  V +E D  D   V+ FV
Sbjct: 633  ------TCKEIRWEGETSGKTLSGETLYKCAYVRELRIPVGGTVALEDDSGDT--VMCFV 684

Query: 787  EYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSV 846
            EYMF+   G K+ HG I+Q+GS T+L N ANEREVFL N C + +L DIK+ V+VDI+S 
Sbjct: 685  EYMFQKVDGSKMVHGRILQKGSQTILDNAANEREVFLTNDCLEFKLDDIKELVMVDIQSR 744

Query: 847  PWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS 906
            PWGH++RK+ + ADKV++ +AEERKKKG P  Y+CKSLYWPE+GAFF L  D MGLG G 
Sbjct: 745  PWGHKYRKENSEADKVEQVKAEERKKKGQPMVYFCKSLYWPEKGAFFALSRDKMGLGSGL 804

Query: 907  CHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNV 966
            C +C   E + ++   K+ SKTSFVY    Y V++++YISP  F  D+    TFKAGRNV
Sbjct: 805  CSSCDNIEPDSDE--LKIFSKTSFVYRKVTYNVNEFLYISPDFFAEDEDRA-TFKAGRNV 861

Query: 967  GLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETH 1026
            GLKPY VCQ+L I      K+    S  +  RRF+RPDDIS+ KAY SDIREVYYSE+  
Sbjct: 862  GLKPYAVCQILSIPEGAGSKKLNPASANISARRFYRPDDISSAKAYASDIREVYYSEDVI 921

Query: 1027 LIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGS 1086
             + V+ I GKCEVRKKND+ + + P +F+H+FFCE ++D + G+LKQLP +++       
Sbjct: 922  DVPVDMIEGKCEVRKKNDLASSDLPVMFEHVFFCELIYDRASGALKQLPPNVRFM---SM 978

Query: 1087 LDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTK 1146
            +   +A ++ KGK I   D+++  K     +EN LATLDIFAGCGGLSEGLQQ+G+S TK
Sbjct: 979  VQRTSALKKNKGKQICEPDQIDSGKWLDVPKENRLATLDIFAGCGGLSEGLQQAGVSFTK 1038

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIEYEEPAGEAF  NHPE+++ ++NCNVIL+A+M+KCGD +DCVSTSEAAE AA L E 
Sbjct: 1039 WAIEYEEPAGEAFNKNHPEAVVFVDNCNVILKAIMDKCGDTDDCVSTSEAAEQAAKLPEV 1098

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
             INNLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FLLE
Sbjct: 1099 NINNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLE 1158

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSFNKGQTFRL +ASLLEMGYQVRFGILEAGAFGV+QSRKRAFIWAA+P + LP+
Sbjct: 1159 NVRNFVSFNKGQTFRLAVASLLEMGYQVRFGILEAGAFGVAQSRKRAFIWAAAPGEMLPD 1218

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
            WPEPMHVFA+PELKI L D   Y+A RSTA GAPFRA+TVRDT+GDLP VGNGASK  +E
Sbjct: 1219 WPEPMHVFASPELKITLPDGQYYAAARSTAGGAPFRAITVRDTVGDLPKVGNGASKLTLE 1278

Query: 1387 YQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG 1446
            Y  +PVSWFQK+IRGNM VL DHISKEMNELNLIRCQ I KRPG DWHDLPDEKVKLS G
Sbjct: 1279 YGGEPVSWFQKKIRGNMMVLNDHISKEMNELNLIRCQHIQKRPGCDWHDLPDEKVKLSNG 1338

Query: 1447 QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTV 1506
            Q+ DLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+TV
Sbjct: 1339 QMADLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITV 1398

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            RECARSQGFPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLKEAV+ ++
Sbjct: 1399 RECARSQGFPDSYEFAGNIQNKHRQIGNAVPPPLAYALGRKLKEAVDKRQ 1448


>gi|6523846|gb|AAF14882.1|AF138283_1 cytosine-5 methyltransferase [Arabidopsis thaliana]
          Length = 1517

 Score = 1760 bits (4559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1542 (58%), Positives = 1138/1542 (73%), Gaps = 54/1542 (3%)

Query: 39   DSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIV 98
            ++ +G+++K    S D     +RPKR AACT+FKEKS+RIS+KS  VEAKK+Q   +EIV
Sbjct: 2    ETKAGKQKKRSVDSDDDVSKERRPKRAAACTNFKEKSLRISDKSETVEAKKEQILAEEIV 61

Query: 99   AVGLTAR---QDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREK 155
            A+ LT+     D  RPNRRL DF+LHD  G+PQP+EMLE+ D+FI G++LPL +  ++++
Sbjct: 62   AIQLTSSLESNDDPRPNRRLTDFVLHDSEGVPQPVEMLELGDIFIEGVVLPLGD--EKKE 119

Query: 156  EKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACI 215
            EKGVR + FGR+E+W+ISGYEDGSPVIW+ST +ADYDC KP+  YKK Y+ FFEKA AC+
Sbjct: 120  EKGVRFQSFGRVENWNISGYEDGSPVIWISTALADYDCRKPSKKYKKLYDYFFEKACACV 179

Query: 216  EVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLD 275
            EV+K LSK    N D S+DELLA V RSMSGSK F  G +I++FVISQGEFI+NQL GLD
Sbjct: 180  EVFKSLSK----NPDTSLDELLAAVSRSMSGSKIFSSGGAIQEFVISQGEFIYNQLAGLD 235

Query: 276  ETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG-SKVGDGDGKMDQYGS 334
            ET+K ++  F E  VLV+L++  S + +    N A     L I  SKV   D  +D    
Sbjct: 236  ETAKNHETCFVENRVLVSLRDHESNKIHKALSNVA-----LRIDESKVVTSDHLVD---- 286

Query: 335  STCPADEDEDAKLARLLQEEELWQS---KKQKKTQGSTSGMNKFYIKINEDEIANDYPFP 391
                  EDED K A+L+QEEE  +S    + K++  ++ G ++FYIKI+EDEIA+DYP P
Sbjct: 287  ----GAEDEDVKYAKLIQEEEYRKSMERSRNKRSSTTSGGSSRFYIKISEDEIADDYPLP 342

Query: 392  VFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDID 451
             +Y+ ++EE DEL+ +++ Y+  D   LP R LH+W+LYNSDSR+ISLE+LPM+PC +ID
Sbjct: 343  SYYKNTKEETDELVLFEAGYE-VDTRDLPCRTLHNWTLYNSDSRMISLEVLPMRPCAEID 401

Query: 452  VTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFI 511
            VT+FGSG +  D+GSGFCLD DS   TS  S   D  G  I+LS IKEWMIEFG+ MIF+
Sbjct: 402  VTVFGSGVVAEDDGSGFCLD-DSESSTSTQSNDHD--GMNIFLSQIKEWMIEFGAEMIFV 458

Query: 512  SIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEI 571
            ++RTD+AWYRLGKPSKQYAPW+  V+KT RV ISI  ML  ++RV++LS+ +VIKRL  +
Sbjct: 459  TLRTDMAWYRLGKPSKQYAPWFGTVMKTVRVGISIFNMLMRESRVAKLSYANVIKRLCGL 518

Query: 572  KKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWL 631
            +++  +YISS    VERYVVVHGQI+LQLF EYPD+ IK+C F+  L  KM++ HHTKW+
Sbjct: 519  EENDKAYISSKLLDVERYVVVHGQIILQLFEEYPDKDIKRCPFVTSLASKMQDIHHTKWI 578

Query: 632  VKKKKVQKSEI-NLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETA 690
            +KKKK    +  NLNPRA + PVV S+ K MQATTTRL+NRIWGE+YS YSPE       
Sbjct: 579  IKKKKKILQKGKNLNPRAGIAPVV-SRMKAMQATTTRLVNRIWGEFYSIYSPE-----VP 632

Query: 691  CEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQ-------IKSRSTKKEITWEG 743
             EA   E VEE+   E ++ +E +    E     +V +Q       IK  S   EI W+G
Sbjct: 633  SEAINAENVEEEELEEVEEEDENEEDDPEENELEAVEIQNSPTPKKIKGISEDMEIKWDG 692

Query: 744  ECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHG 801
            E + K+  G  LY +A V G+VV +GSAV++EVD+ D   +I FVE+MFE++   K+ HG
Sbjct: 693  EILGKTSAGEPLYGRAFVGGDVVVVGSAVILEVDDQDDTQLICFVEFMFESSNHSKMLHG 752

Query: 802  IIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADK 861
             ++QRGS TVLG  ANERE+FL N+C  ++L+DIK TV ++IRS  WGHQ+RK+  + DK
Sbjct: 753  KLLQRGSETVLGMAANERELFLTNECLTVQLKDIKGTVSLEIRSRLWGHQYRKENIDVDK 812

Query: 862  VDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKET 921
            +DRARAEERK  GLPT+YYCKSLY PERG FF LP + MGLG G C +C  +E+E+E+  
Sbjct: 813  LDRARAEERKTNGLPTDYYCKSLYSPERGGFFSLPRNDMGLGSGFCSSCKIRENEEERSK 872

Query: 922  FKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDK----AEGETFKAGRNVGLKPYVVCQL 976
             K++ SKT F+    EY   D+VY+ P++ T D     +   T K GRNVGLK +VVCQL
Sbjct: 873  TKLNDSKTGFLSNGIEYHNGDFVYVLPNYITKDGLKKGSRRTTLKCGRNVGLKAFVVCQL 932

Query: 977  LEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGK 1036
            L++IV +E ++A   S QVK+ RF+RP+DIS EKAY SDI+E+YYS++T+++  EAI GK
Sbjct: 933  LDVIVLEESRKASKASFQVKLTRFYRPEDISEEKAYASDIQELYYSQDTYILPPEAIQGK 992

Query: 1037 CEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRK 1096
            CEVRKK+D+P C    I  HIFFCE  +D S G LKQ PA++KL++S+  +  E   R K
Sbjct: 993  CEVRKKSDMPLCREYPILDHIFFCEVFYDSSTGYLKQFPANMKLKFST--IKDETLLREK 1050

Query: 1097 KGKCIE-GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPA 1155
            KGK +E G     + K     +E  LATLDIFAGCGGLS GL+ +G+S+TKWAIEYEEPA
Sbjct: 1051 KGKGVETGTSSGMLMKPDEVPKEKPLATLDIFAGCGGLSHGLENAGVSTTKWAIEYEEPA 1110

Query: 1156 GEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPG 1215
            G AFK NHPE+ + ++NCNVILRA+MEKCGD +DCVST EAAELAA LDEN  + LPLPG
Sbjct: 1111 GHAFKQNHPEATVFVDNCNVILRAIMEKCGDVDDCVSTVEAAELAAKLDENQKSTLPLPG 1170

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
            QVDFINGGPPCQGFSGMNRF+  +WSKVQCEMILAFLSFADYF+P+YFLLENV+ FV++N
Sbjct: 1171 QVDFINGGPPCQGFSGMNRFSHGSWSKVQCEMILAFLSFADYFRPKYFLLENVKKFVTYN 1230

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            KG+TF+LT+ASLLEMGYQVRFGILEAG +GVSQ RKR  IWAASP + LPEWPEPMHVF 
Sbjct: 1231 KGRTFQLTMASLLEMGYQVRFGILEAGTYGVSQPRKRVIIWAASPEEVLPEWPEPMHVFD 1290

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
             P  KI L    +Y A  +T  GAPFR++TVRDTIGDLP V NG SK   EY   P SWF
Sbjct: 1291 NPGSKISLPRGLRYDAGCNTKFGAPFRSITVRDTIGDLPPVENGESKINKEYGTTPASWF 1350

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC 1455
            QK+IRGNM+VLTDHI K +NELNLIRC+KIPKRPGADW DLPDE V LS G V  L P  
Sbjct: 1351 QKKIRGNMSVLTDHICKGLNELNLIRCKKIPKRPGADWRDLPDENVTLSNGLVEKLRPLA 1410

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
            L  TAK HN+WKGL+GRLDW+GN P SITDPQPMGKVGMCFHP+QDRI+TVRECARSQGF
Sbjct: 1411 LSKTAKNHNEWKGLYGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRIITVRECARSQGF 1470

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            PDSY+F G+ +HKHRQIGNAVPP LAFALGRKLKEA+  K S
Sbjct: 1471 PDSYEFSGTTKHKHRQIGNAVPPPLAFALGRKLKEALYLKSS 1512


>gi|15236413|ref|NP_193150.1| DNA methyltransferase 2 [Arabidopsis thaliana]
 gi|2244770|emb|CAB10193.1| (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|7268119|emb|CAB78456.1| (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|332657979|gb|AEE83379.1| DNA methyltransferase 2 [Arabidopsis thaliana]
          Length = 1519

 Score = 1759 bits (4557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1542 (58%), Positives = 1138/1542 (73%), Gaps = 54/1542 (3%)

Query: 39   DSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIV 98
            ++ +G+++K    S D     +RPKR AACT+FKEKS+RIS+KS  VEAKK+Q   +EIV
Sbjct: 4    ETKAGKQKKRSVDSDDDVSKERRPKRAAACTNFKEKSLRISDKSETVEAKKEQILAEEIV 63

Query: 99   AVGLTAR---QDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREK 155
            A+ LT+     D  RPNRRL DF+LHD  G+PQP+EMLE+ D+FI G++LPL +  ++++
Sbjct: 64   AIQLTSSLESNDDPRPNRRLTDFVLHDSEGVPQPVEMLELGDIFIEGVVLPLGD--EKKE 121

Query: 156  EKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACI 215
            EKGVR + FGR+E+W+ISGYEDGSPVIW+ST +ADYDC KP+  YKK Y+ FFEKA AC+
Sbjct: 122  EKGVRFQSFGRVENWNISGYEDGSPVIWISTALADYDCRKPSKKYKKLYDYFFEKACACV 181

Query: 216  EVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLD 275
            EV+K LSK    N D S+DELLA V RSMSGSK F  G +I++FVISQGEFI+NQL GLD
Sbjct: 182  EVFKSLSK----NPDTSLDELLAAVSRSMSGSKIFSSGGAIQEFVISQGEFIYNQLAGLD 237

Query: 276  ETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG-SKVGDGDGKMDQYGS 334
            ET+K ++  F E  VLV+L++  S + +    N A     L I  SKV   D  +D    
Sbjct: 238  ETAKNHETCFVENRVLVSLRDHESNKIHKALSNVA-----LRIDESKVVTSDHLVD---- 288

Query: 335  STCPADEDEDAKLARLLQEEELWQS---KKQKKTQGSTSGMNKFYIKINEDEIANDYPFP 391
                  EDED K A+L+QEEE  +S    + K++  ++ G ++FYIKI+EDEIA+DYP P
Sbjct: 289  ----GAEDEDVKYAKLIQEEEYRKSMERSRNKRSSTTSGGSSRFYIKISEDEIADDYPLP 344

Query: 392  VFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDID 451
             +Y+ ++EE DEL+ +++ Y+  D   LP R LH+W+LYNSDSR+ISLE+LPM+PC +ID
Sbjct: 345  SYYKNTKEETDELVLFEAGYE-VDTRDLPCRTLHNWTLYNSDSRMISLEVLPMRPCAEID 403

Query: 452  VTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFI 511
            VT+FGSG +  D+GSGFCLD DS   TS  S   D  G  I+LS IKEWMIEFG+ MIF+
Sbjct: 404  VTVFGSGVVAEDDGSGFCLD-DSESSTSTQSNDHD--GMNIFLSQIKEWMIEFGAEMIFV 460

Query: 512  SIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEI 571
            ++RTD+AWYRLGKPSKQYAPW+  V+KT RV ISI  ML  ++RV++LS+ +VIKRL  +
Sbjct: 461  TLRTDMAWYRLGKPSKQYAPWFGTVMKTVRVGISIFNMLMRESRVAKLSYANVIKRLCGL 520

Query: 572  KKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWL 631
            +++  +YISS    VERYVVVHGQI+LQLF EYPD+ IK+C F+  L  KM++ HHTKW+
Sbjct: 521  EENDKAYISSKLLDVERYVVVHGQIILQLFEEYPDKDIKRCPFVTSLASKMQDIHHTKWI 580

Query: 632  VKKKKVQKSEI-NLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETA 690
            +KKKK    +  NLNPRA + PVV S+ K MQATTTRL+NRIWGE+YS YSPE       
Sbjct: 581  IKKKKKILQKGKNLNPRAGIAPVV-SRMKAMQATTTRLVNRIWGEFYSIYSPE-----VP 634

Query: 691  CEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQ-------IKSRSTKKEITWEG 743
             EA   E VEE+   E ++ +E +    E     +V +Q       IK  S   EI W+G
Sbjct: 635  SEAINAENVEEEELEEVEEEDENEEDDPEENELEAVEIQNSPTPKKIKGISEDMEIKWDG 694

Query: 744  ECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHG 801
            E + K+  G  LY +A V G+VV +GSAV++EVD+ D   +I FVE+MFE++   K+ HG
Sbjct: 695  EILGKTSAGEPLYGRAFVGGDVVVVGSAVILEVDDQDDTQLICFVEFMFESSNHSKMLHG 754

Query: 802  IIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADK 861
             ++QRGS TVLG  ANERE+FL N+C  ++L+DIK TV ++IRS  WGHQ+RK+  + DK
Sbjct: 755  KLLQRGSETVLGMAANERELFLTNECLTVQLKDIKGTVSLEIRSRLWGHQYRKENIDVDK 814

Query: 862  VDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKET 921
            +DRARAEERK  GLPT+YYCKSLY PERG FF LP + MGLG G C +C  +E+E+E+  
Sbjct: 815  LDRARAEERKTNGLPTDYYCKSLYSPERGGFFSLPRNDMGLGSGFCSSCKIRENEEERSK 874

Query: 922  FKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDK----AEGETFKAGRNVGLKPYVVCQL 976
             K++ SKT F+    EY   D+VY+ P++ T D     +   T K GRNVGLK +VVCQL
Sbjct: 875  TKLNDSKTGFLSNGIEYHNGDFVYVLPNYITKDGLKKGSRRTTLKCGRNVGLKAFVVCQL 934

Query: 977  LEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGK 1036
            L++IV +E ++A   S QVK+ RF+RP+DIS EKAY SDI+E+YYS++T+++  EAI GK
Sbjct: 935  LDVIVLEESRKASKASFQVKLTRFYRPEDISEEKAYASDIQELYYSQDTYILPPEAIQGK 994

Query: 1037 CEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRK 1096
            CEVRKK+D+P C    I  HIFFCE  +D S G LKQ PA++KL++S+  +  E   R K
Sbjct: 995  CEVRKKSDMPLCREYPILDHIFFCEVFYDSSTGYLKQFPANMKLKFST--IKDETLLREK 1052

Query: 1097 KGKCIE-GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPA 1155
            KGK +E G     + K     +E  LATLDIFAGCGGLS GL+ +G+S+TKWAIEYEEPA
Sbjct: 1053 KGKGVETGTSSGMLMKPDEVPKEKPLATLDIFAGCGGLSHGLENAGVSTTKWAIEYEEPA 1112

Query: 1156 GEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPG 1215
            G AFK NHPE+ + ++NCNVILRA+MEKCGD +DCVST EAAELAA LDEN  + LPLPG
Sbjct: 1113 GHAFKQNHPEATVFVDNCNVILRAIMEKCGDVDDCVSTVEAAELAAKLDENQKSTLPLPG 1172

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
            QVDFINGGPPCQGFSGMNRF+  +WSKVQCEMILAFLSFADYF+P+YFLLENV+ FV++N
Sbjct: 1173 QVDFINGGPPCQGFSGMNRFSHGSWSKVQCEMILAFLSFADYFRPKYFLLENVKKFVTYN 1232

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            KG+TF+LT+ASLLEMGYQVRFGILEAG +GVSQ RKR  IWAASP + LPEWPEPMHVF 
Sbjct: 1233 KGRTFQLTMASLLEMGYQVRFGILEAGTYGVSQPRKRVIIWAASPEEVLPEWPEPMHVFD 1292

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
             P  KI L    +Y A  +T  GAPFR++TVRDTIGDLP V NG SK   EY   P SWF
Sbjct: 1293 NPGSKISLPRGLRYDAGCNTKFGAPFRSITVRDTIGDLPPVENGESKINKEYGTTPASWF 1352

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC 1455
            QK+IRGNM+VLTDHI K +NELNLIRC+KIPKRPGADW DLPDE V LS G V  L P  
Sbjct: 1353 QKKIRGNMSVLTDHICKGLNELNLIRCKKIPKRPGADWRDLPDENVTLSNGLVEKLRPLA 1412

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
            L  TAK HN+WKGL+GRLDW+GN P SITDPQPMGKVGMCFHP+QDRI+TVRECARSQGF
Sbjct: 1413 LSKTAKNHNEWKGLYGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRIITVRECARSQGF 1472

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            PDSY+F G+ +HKHRQIGNAVPP LAFALGRKLKEA+  K S
Sbjct: 1473 PDSYEFSGTTKHKHRQIGNAVPPPLAFALGRKLKEALYLKSS 1514


>gi|357115052|ref|XP_003559306.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1A-like [Brachypodium
            distachyon]
          Length = 1528

 Score = 1731 bits (4482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1548 (56%), Positives = 1126/1548 (72%), Gaps = 42/1548 (2%)

Query: 21   SEMKNKKRKPKSEVPETKDST------SGQKEKMKKLSQDSEEP--RKRPKRMAACTDFK 72
            S  K ++ KP+    E+ +        +  K++    +++ + P   KR KR AAC++FK
Sbjct: 9    SGTKRRRAKPREMADESIEDDRLETEFANDKKESNGATENGDRPIAHKRRKRAAACSNFK 68

Query: 73   EKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPN-RRLNDFILHDENGLPQPLE 131
            EK+  +SE   LV A K+   ++EI AV LT     D+ + R+L DFILHDENG  QP E
Sbjct: 69   EKAFDLSEDDSLV-AIKESRVEEEIGAVRLTKTGPEDKKSCRKLIDFILHDENGNAQPFE 127

Query: 132  MLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADY 191
            M   D + I+ L++PL ++ ++++EKG+RC  FG I++W+ISGY+ G+  IWLST++ADY
Sbjct: 128  MSHSDGISITALVMPLDDNMEKDREKGIRCLRFGPIKNWAISGYKQGTAAIWLSTELADY 187

Query: 192  DCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFR 251
             C+KPAS Y+ Y++ F  KA  C+EVYKKL+++ GGN    ++ELLA VVRS++ ++ F 
Sbjct: 188  KCVKPASGYRSYFDHFSRKADVCVEVYKKLARSVGGNLQLGLEELLASVVRSINSNRSFN 247

Query: 252  GGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAAS 311
            G V+ KDFVIS GEFI+NQL GLD TS K+D+  +ELPVLVAL+ E + R  F ++   +
Sbjct: 248  GTVN-KDFVISIGEFIYNQLSGLDNTSDKDDETLSELPVLVALRNECTSRIEFNKLPGMT 306

Query: 312  LGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQK-KTQGSTS 370
                L    K+ DG  K +         +EDED KLARLL EEE W+  KQ+ K Q S  
Sbjct: 307  SSETL----KIKDGQCKEE------VTRNEDEDEKLARLLHEEEEWKLMKQRSKRQASKK 356

Query: 371  GMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLY 430
             +   YIKI+E EIANDYP P +Y+P   E DE + +DSD      D +P R+L++W+LY
Sbjct: 357  NV---YIKISETEIANDYPLPAYYKPYSLEMDEYM-FDSDMGMFS-DDVPVRILNNWALY 411

Query: 431  NSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGF 490
            NSDSRLISLEL+PMK   + D+ IFGSG M  D+GS F     +   +S     Q+  G 
Sbjct: 412  NSDSRLISLELIPMKSGAENDIVIFGSGFMREDDGSFFSTAEPTQLSSSSSKSDQEDQGV 471

Query: 491  PIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITML 550
            PIYLS IKEW+IEFG SMI ISIRTD+AWY+L +P KQYAPW + VLKTAR+A+S+IT+L
Sbjct: 472  PIYLSPIKEWVIEFGGSMICISIRTDIAWYKLHQPLKQYAPWCDTVLKTARLAVSVITLL 531

Query: 551  KEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIK 610
            K Q+R S+L F DVIK+++E +    ++ISS+   VERYVVVHGQI+LQ FA YPD  I+
Sbjct: 532  KGQSRASKLGFADVIKKVAEFESGHPAFISSNATLVERYVVVHGQIILQQFANYPDPSIR 591

Query: 611  KCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLIN 670
            + AF+ GL  KME+R H K ++KKK       NLNP A++GP++  +RK+M+ATTTRLI+
Sbjct: 592  RSAFVTGLTAKMEDRRHIKLVMKKKSQPTRGENLNPSANIGPII--RRKLMRATTTRLIS 649

Query: 671  RIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQI 730
            +IWG+YY+ + PED KE  A +  ++ E E++   E+ + E +           S   + 
Sbjct: 650  KIWGDYYATHFPEDSKE-GAEDEPKEIEEEQEENEEDAEEEVKVEEEHVLSTPPSARSRK 708

Query: 731  KSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEY 788
             S +  KEI WEG+ V K  SG  LYK A V    +S+G AV +E D  D L  + FVEY
Sbjct: 709  SSSNNCKEIEWEGQTVGKTRSGDDLYKCARVRELNISVGGAVKLEDDSEDAL--MCFVEY 766

Query: 789  MFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPW 848
            M+E   G  + HG I+Q+GS TVLGN ANE+EVF+ N C + E+ DIK+ V V+++ +P 
Sbjct: 767  MYEKQDGTHMIHGRILQKGSQTVLGNAANEQEVFVTNDCLEFEIGDIKELVSVNVQLIPR 826

Query: 849  GHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCH 908
            GH++RK+   A++++RA+AEERKKKGLP EY CKSLY PE+GAFF LP D +G G G C 
Sbjct: 827  GHKYRKENLQANRIERAKAEERKKKGLPMEYICKSLYCPEKGAFFSLPYDKLGTGTGICS 886

Query: 909  ACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEG-ETFKAGRNVG 967
            +C  +E+  ++  FK+ S+T+FV+  + Y VHD++Y+ P  F+  + +G ET+KAGRNVG
Sbjct: 887  SCQQREAVGDE--FKILSETTFVFKNSTYAVHDFLYVRPEFFS--RVDGHETYKAGRNVG 942

Query: 968  LKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHL 1027
            LKPYVVC L  I  P   K+   +ST+V VRR +RPDDIS+ +AY SDIREVYYSE+   
Sbjct: 943  LKPYVVCHLHSINAPAGSKKVNPESTKVSVRRLYRPDDISSARAYSSDIREVYYSEDMLS 1002

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
            + V  I GKCEV  KN++P  N P +  H+F+CE+L+DP  G+LKQL +++KL   +   
Sbjct: 1003 VPVAMIEGKCEVTTKNNLPDSNLPVVVDHVFYCEYLYDPDTGALKQLQSNVKLMTIA--- 1059

Query: 1088 DSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKW 1147
                 S++ KGK I   D+   +KQ  A+ EN LATLDIFAGCGGLSEGLQ SG S TKW
Sbjct: 1060 RKAPTSKKNKGKQICDSDQAGSDKQKAAASENSLATLDIFAGCGGLSEGLQLSGASHTKW 1119

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV 1207
            AIEYEEPAG+AF  NHPE+ + + NCNVIL+A+M+KC D +DC+STSEA+E AA L +  
Sbjct: 1120 AIEYEEPAGQAFGENHPEAAVFVENCNVILKAIMDKCDDTDDCISTSEASEQAAKLSDEK 1179

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
            I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FLLEN
Sbjct: 1180 IKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLEN 1239

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA+GV+QSRKRAFIWAA+P +TLP+W
Sbjct: 1240 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPGETLPDW 1299

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
            PEPMHVFA+PELKI L D   Y+A +STA GAPFR++TVRDTIGDLP V NGASK  ++Y
Sbjct: 1300 PEPMHVFASPELKITLPDGKYYAAAKSTAGGAPFRSITVRDTIGDLPPVENGASKPTIQY 1359

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
             ++P+SWFQK+IRG++  L D ISKEMNELNLIRC+ IPKRPG DWHDLPDEKVKLS+GQ
Sbjct: 1360 GSEPISWFQKKIRGDVLSLNDQISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLSSGQ 1419

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
            +V+LIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+TVR
Sbjct: 1420 MVELIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITVR 1479

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            ECARSQGF D Y+F G+IQ KHRQIGNAVPP LA+ALGRKLK+A+ ++
Sbjct: 1480 ECARSQGFLDGYRFAGNIQSKHRQIGNAVPPPLAYALGRKLKQAINAR 1527


>gi|297804976|ref|XP_002870372.1| hypothetical protein ARALYDRAFT_355455 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316208|gb|EFH46631.1| hypothetical protein ARALYDRAFT_355455 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1496

 Score = 1697 bits (4394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 885/1526 (57%), Positives = 1104/1526 (72%), Gaps = 70/1526 (4%)

Query: 45   KEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLT- 103
            K+K + +  D     KRPKR A CT FKEKS+RIS+KS  VEAKK+Q   +EIVA+ LT 
Sbjct: 7    KQKKRSVDSDDVSREKRPKRAAECTSFKEKSLRISKKSATVEAKKEQIVTEEIVAIKLTF 66

Query: 104  ---ARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVR 160
               +  D  RPNRRL DF+L D NG+PQP+EMLE+ D+FI G++LPL +  +   EKGVR
Sbjct: 67   SLESNDDQPRPNRRLTDFVLLDSNGVPQPVEMLELGDIFIEGVVLPLGD--EIMNEKGVR 124

Query: 161  CEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKK 220
             + FGR+E+W+ISGYEDGSPVIW+ST +ADYDC KPA+SYKK Y+ FF+KA AC+ V+K 
Sbjct: 125  FQSFGRVENWTISGYEDGSPVIWISTALADYDCRKPANSYKKMYDYFFKKAYACVAVFKN 184

Query: 221  LSKTSGGNSDCSIDELLAGVVRSM-SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSK 279
            LSK    N D S+DELLA VVRSM SGSK F    +I++FVI QGEFI+NQL GLDET+K
Sbjct: 185  LSK----NPDTSLDELLAAVVRSMMSGSKIFSSVAAIQEFVIFQGEFIYNQLAGLDETAK 240

Query: 280  KNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG---SKVGDGDGKMDQYGSST 336
             ++  F E PVLV+L+++SS   NF + ++     N+A+    SK    D  MD      
Sbjct: 241  SHETSFVENPVLVSLRDKSS---NFHKASS-----NVAMRIDESKAVTSDQLMDD----- 287

Query: 337  CPADEDEDAKLARLLQEEELWQS--KKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFY 394
                EDED +  + +++EE  +S  + + K   +TS  N FY KINEDEIANDYP P +Y
Sbjct: 288  ---AEDEDVRYTKFIRDEEYRKSMDRARNKRSLTTSASNNFYTKINEDEIANDYPHPSYY 344

Query: 395  RPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTI 454
            + +E+E DEL+ +D  Y+  D   LP R LH+W+LYNSDS  ISLELLPMKPC+DIDVT+
Sbjct: 345  KNTEKETDELVLFDPGYE-VDTRYLPWRTLHNWALYNSDSHFISLELLPMKPCDDIDVTV 403

Query: 455  FGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIR 514
            FGSG +  D+G+GFCLD   S         Q   G  IYLS IKEW +E G  M+F+ +R
Sbjct: 404  FGSGVVDEDDGTGFCLDGSES-------STQSNDGMRIYLSQIKEWTVEIGEEMVFVILR 456

Query: 515  TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
            TDLAWYRLG+PSKQYAPW+EPVLKTARV  SI+ +L+ + R+ +LS+  VIKRLS ++++
Sbjct: 457  TDLAWYRLGRPSKQYAPWFEPVLKTARVGRSILALLENEMRIPKLSYLYVIKRLSGLEEN 516

Query: 575  QHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
              +YISS    VERYVVVHGQI+LQL  EYP   I++C F+  L  KM++ HHTK ++KK
Sbjct: 517  DKAYISSKLLDVERYVVVHGQIILQLLREYPG--IRRCPFVTCLASKMQDMHHTKCIIKK 574

Query: 635  KKVQKSEI-NLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEA 693
            KK    +  NLN R  M P VVSK K MQATTTRLINRIWGE+ S YS ED  EE   E 
Sbjct: 575  KKKILKKGKNLNLRVDM-PRVVSKMKAMQATTTRLINRIWGEFNSIYSAEDSSEEIVAEE 633

Query: 694  NEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECV--RKSGL 751
                             EEE    EE  I+ +  VQ  +   K  I WEGE +   ++G 
Sbjct: 634  E---------------VEEEDENEEEDTIAKAAKVQNAATFKKIGIIWEGETLGTTRAGE 678

Query: 752  ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTV 811
             LY +A+V G  V +G AV++EV + D+   IYFVEYMF+ +   K+ HG ++QRGS TV
Sbjct: 679  PLYGQALVGGGKVVVGGAVILEVGDQDE---IYFVEYMFQNSDHYKMLHGKLLQRGSETV 735

Query: 812  LGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERK 871
            LG  ANERE+FL N C  ++L+DIK TV  +IRS  WGHQ+RK+   ADK+DRAR EERK
Sbjct: 736  LGTAANERELFLTNVCLTVQLKDIKATVNFEIRSRSWGHQYRKENMAADKLDRAREEERK 795

Query: 872  KKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSF 930
             K LPTEYYCKS Y P+RG FF LP   MGLG G C +C  +E+E+E+   K++ SKT F
Sbjct: 796  AKDLPTEYYCKSFYSPKRGGFFSLPRSDMGLGSGFCSSCKIRENEEERSKTKLNDSKTGF 855

Query: 931  VYGTAEYFVHDYVYISPHHFTWDKAEGET-FKAGRNVGLKPYVVCQLLEIIVPKEPKRAE 989
            +    EY V DYVY+ P++ T  K +  + FK GRNVGLKP+VV QLL+I++ KEPK+  
Sbjct: 856  LSDGIEYSVGDYVYVIPNYITKGKGKRRSMFKYGRNVGLKPFVVSQLLDIVL-KEPKKGS 914

Query: 990  VKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
                +V +RRF+RP+DISAE AY S+I+EVYYS++T+++  EAI GKCEV KK+D+P C 
Sbjct: 915  SAPFEVGLRRFYRPEDISAELAYASEIQEVYYSQDTYILPPEAIKGKCEVMKKHDMPLCR 974

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE-DELE 1108
               +  HIFFCE  +D S   L++LP+++KL++S+  +  E   R KKGK +  E D + 
Sbjct: 975  EYPVLDHIFFCERFYDSSNDHLEKLPSNMKLKFST--IKDEKLLREKKGKGVLSETDSVM 1032

Query: 1109 VEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLM 1168
              K     +E  LATLDIFAGCGGLS GL+++G+S TKWAIEYEEPA +AFK NHP++ +
Sbjct: 1033 SVKPDEVPKEMRLATLDIFAGCGGLSYGLEKAGVSDTKWAIEYEEPAAQAFKQNHPKTTV 1092

Query: 1169 LINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
             ++NCNVILRA+MEKCGD +DC+ST+EAAELAA LDE+  + LPLPGQVDFINGGPPCQG
Sbjct: 1093 FVDNCNVILRAIMEKCGDVDDCISTTEAAELAAKLDESQKSILPLPGQVDFINGGPPCQG 1152

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
            FSGMNRF+  +WSKVQCEMILAFLSFADYF+P+YFLLENV+ FV+FNKG+TF+LT+ASLL
Sbjct: 1153 FSGMNRFSDRSWSKVQCEMILAFLSFADYFRPKYFLLENVKKFVTFNKGRTFQLTVASLL 1212

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQ 1348
            EMGYQVRFG+LEAGA+G+SQ RKRAFIWAA+P++ LPEWPEPMHVF  P  KI LS    
Sbjct: 1213 EMGYQVRFGLLEAGAYGISQPRKRAFIWAAAPNEVLPEWPEPMHVFNNPGFKISLSRRLH 1272

Query: 1349 YSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTD 1408
            Y+AV+ST  GAPFR++TVRDTIGDLP V +G SK   EY   PVSWFQK +RGN  VLTD
Sbjct: 1273 YAAVQSTKFGAPFRSITVRDTIGDLPPVESGESKINKEYDIVPVSWFQKEMRGNKIVLTD 1332

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
            HI ++MNELNLIRC+KIPK PGADW DLPDE VKLS G VV LIP  L N AK HN ++G
Sbjct: 1333 HICQKMNELNLIRCKKIPKTPGADWRDLPDENVKLSNGVVVKLIPSGLINKAKEHNGYRG 1392

Query: 1469 LFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            L+GRLDW+GN PTSIT PQPMG VGMCFHPDQDRI++VRECARSQGFPDSY+F G I+ K
Sbjct: 1393 LYGRLDWQGNLPTSITTPQPMGWVGMCFHPDQDRIISVRECARSQGFPDSYEFSGKIKDK 1452

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAVES 1554
            HRQIGNAVPP LAFALGRKLKEA+ +
Sbjct: 1453 HRQIGNAVPPPLAFALGRKLKEALAT 1478


>gi|334186509|ref|NP_001190725.1| DNA methyltransferase 2 [Arabidopsis thaliana]
 gi|332657980|gb|AEE83380.1| DNA methyltransferase 2 [Arabidopsis thaliana]
          Length = 1545

 Score = 1684 bits (4362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1568 (56%), Positives = 1120/1568 (71%), Gaps = 80/1568 (5%)

Query: 39   DSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIV 98
            ++ +G+++K    S D     +RPKR AACT+FKEKS+RIS+KS  VEAKK+Q   +EIV
Sbjct: 4    ETKAGKQKKRSVDSDDDVSKERRPKRAAACTNFKEKSLRISDKSETVEAKKEQILAEEIV 63

Query: 99   AVGLTAR---QDGDRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREK 155
            A+ LT+     D  RPNRRL DF+LHD  G+PQP+EMLE+ D+FI G++LPL +  ++++
Sbjct: 64   AIQLTSSLESNDDPRPNRRLTDFVLHDSEGVPQPVEMLELGDIFIEGVVLPLGD--EKKE 121

Query: 156  EKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACI 215
            EKGVR + FGR+E+W+ISGYEDGSPVIW+ST +ADYDC KP+  YKK Y+ FFEKA AC+
Sbjct: 122  EKGVRFQSFGRVENWNISGYEDGSPVIWISTALADYDCRKPSKKYKKLYDYFFEKACACV 181

Query: 216  EVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLD 275
            EV+K LSK    N D S+DELLA V RSMSGSK F  G +I++FVISQGEFI+NQL GLD
Sbjct: 182  EVFKSLSK----NPDTSLDELLAAVSRSMSGSKIFSSGGAIQEFVISQGEFIYNQLAGLD 237

Query: 276  ETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG-SKVGDGDGKMDQYGS 334
            ET+K ++  F E  VLV+L++  S + +    N A     L I  SKV   D  +D    
Sbjct: 238  ETAKNHETCFVENRVLVSLRDHESNKIHKALSNVA-----LRIDESKVVTSDHLVD---- 288

Query: 335  STCPADEDEDAKLARLLQEEELWQS---KKQKKTQGSTSGMNKFYIKINEDEIANDYPFP 391
                  EDED K A+L+QEEE  +S    + K++  ++ G ++FYIKI+EDEIA+DYP P
Sbjct: 289  ----GAEDEDVKYAKLIQEEEYRKSMERSRNKRSSTTSGGSSRFYIKISEDEIADDYPLP 344

Query: 392  VFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDID 451
             +Y+ ++EE DEL+ +++ Y+  D   LP R LH+W+LYNSDSR+ISLE+LPM+PC +ID
Sbjct: 345  SYYKNTKEETDELVLFEAGYE-VDTRDLPCRTLHNWTLYNSDSRMISLEVLPMRPCAEID 403

Query: 452  VTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFI 511
            VT+FGSG +  D+GSGFCLD DS   TS  S   D  G  I+LS IKEWMIEFG+ MIF+
Sbjct: 404  VTVFGSGVVAEDDGSGFCLD-DSESSTSTQSNDHD--GMNIFLSQIKEWMIEFGAEMIFV 460

Query: 512  SIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEI 571
            ++RTD+AWYRLGKPSKQYAPW+  V+KT RV ISI  ML  ++RV++LS+ +VIKRL  +
Sbjct: 461  TLRTDMAWYRLGKPSKQYAPWFGTVMKTVRVGISIFNMLMRESRVAKLSYANVIKRLCGL 520

Query: 572  KKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWL 631
            +++  +YISS    VERYVVVHGQI+LQLF EYPD+ IK+C F+  L  KM++ HHTKW+
Sbjct: 521  EENDKAYISSKLLDVERYVVVHGQIILQLFEEYPDKDIKRCPFVTSLASKMQDIHHTKWI 580

Query: 632  VKKKKVQKSEI-NLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETA 690
            +KKKK    +  NLNPRA + PVV S+ K MQATTTRL+NRIWGE+YS YSPE       
Sbjct: 581  IKKKKKILQKGKNLNPRAGIAPVV-SRMKAMQATTTRLVNRIWGEFYSIYSPE-----VP 634

Query: 691  CEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQ-------IKSRSTKKEITWEG 743
             EA   E VEE+   E ++ +E +    E     +V +Q       IK  S   EI W+G
Sbjct: 635  SEAINAENVEEEELEEVEEEDENEEDDPEENELEAVEIQNSPTPKKIKGISEDMEIKWDG 694

Query: 744  ECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHG 801
            E + K+  G  LY +A V G+VV +GSAV++EVD+ D   +I FVE+MFE++   K+ HG
Sbjct: 695  EILGKTSAGEPLYGRAFVGGDVVVVGSAVILEVDDQDDTQLICFVEFMFESSNHSKMLHG 754

Query: 802  IIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADK 861
             ++QRGS TVLG  ANERE+FL N+C  ++L+DIK TV ++IRS  WGHQ+RK+  + DK
Sbjct: 755  KLLQRGSETVLGMAANERELFLTNECLTVQLKDIKGTVSLEIRSRLWGHQYRKENIDVDK 814

Query: 862  VDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKET 921
            +DRARAEERK  GLPT+YYCKSLY PERG FF LP + MGLG G C +C  +E+E+E+  
Sbjct: 815  LDRARAEERKTNGLPTDYYCKSLYSPERGGFFSLPRNDMGLGSGFCSSCKIRENEEERSK 874

Query: 922  FKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWD----KAEGETFKAGRNVGLKPYVVCQL 976
             K++ SKT F+    EY   D+VY+ P++ T D     +   T K GRNVGLK +VVCQL
Sbjct: 875  TKLNDSKTGFLSNGIEYHNGDFVYVLPNYITKDGLKKGSRRTTLKCGRNVGLKAFVVCQL 934

Query: 977  LEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGK 1036
            L++IV +E ++A   S QVK+ RF+RP+DIS EKAY SDI+E+YYS++T+++  EAI GK
Sbjct: 935  LDVIVLEESRKASKASFQVKLTRFYRPEDISEEKAYASDIQELYYSQDTYILPPEAIQGK 994

Query: 1037 CEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRK 1096
            CEVRKK+D+P C    I  HIFFCE  +D S G LKQ PA++KL++S  ++  E   R K
Sbjct: 995  CEVRKKSDMPLCREYPILDHIFFCEVFYDSSTGYLKQFPANMKLKFS--TIKDETLLREK 1052

Query: 1097 KGKCIE-GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGI------------- 1142
            KGK +E G     + K     +E  LATLDIFAGCGGLS GL+ +G+             
Sbjct: 1053 KGKGVETGTSSGMLMKPDEVPKEKPLATLDIFAGCGGLSHGLENAGMYLYSHVMHILLSS 1112

Query: 1143 SSTKWAIEYEEPAGEAFKLNHPESLM---LINNCN-VILR---------AVMEKCGDAED 1189
               K  I+      + + L    S M   L+   N  IL+         A+MEKCGD +D
Sbjct: 1113 KHLKTFIKMHVLCNKVYLLQSGRSSMKSQLVMRLNKTILKQRFLLTTAMAIMEKCGDVDD 1172

Query: 1190 CVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL 1249
            CVST EAAELAA LDEN  + LPLPGQVDFINGGPPCQGFSGMNRF+  +WSKVQCEMIL
Sbjct: 1173 CVSTVEAAELAAKLDENQKSTLPLPGQVDFINGGPPCQGFSGMNRFSHGSWSKVQCEMIL 1232

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
            AFLSFADYF+P+YFLLENV+ FV++NKG+TF+LT+ASLLEMGYQVRFGILEAG +GVSQ 
Sbjct: 1233 AFLSFADYFRPKYFLLENVKKFVTYNKGRTFQLTMASLLEMGYQVRFGILEAGTYGVSQP 1292

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDT 1369
            RKR  IWAASP + LPEWPEPMHVF  P  KI L    +Y A  +T  GAPFR++TVRDT
Sbjct: 1293 RKRVIIWAASPEEVLPEWPEPMHVFDNPGSKISLPRGLRYDAGCNTKFGAPFRSITVRDT 1352

Query: 1370 IGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
            IGDLP V NG SK   EY   P SWFQK+IRGNM+VLTDHI K +NELNLIRC+KIPKRP
Sbjct: 1353 IGDLPPVENGESKINKEYGTTPASWFQKKIRGNMSVLTDHICKGLNELNLIRCKKIPKRP 1412

Query: 1430 GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM 1489
            GADW DLPDE V LS G V  L P  L  TAK HN+WKGL+GRLDW+GN P SITDPQPM
Sbjct: 1413 GADWRDLPDENVTLSNGLVEKLRPLALSKTAKNHNEWKGLYGRLDWQGNLPISITDPQPM 1472

Query: 1490 GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            GKVGMCFHP+QDRI+TVRECARSQGFPDSY+F G+ +HKHRQIGNAVPP LAFALGRKLK
Sbjct: 1473 GKVGMCFHPEQDRIITVRECARSQGFPDSYEFSGTTKHKHRQIGNAVPPPLAFALGRKLK 1532

Query: 1550 EAVESKRS 1557
            EA+  K S
Sbjct: 1533 EALYLKSS 1540


>gi|60544836|gb|AAX22756.1| DMT1 [Arabidopsis thaliana]
          Length = 1431

 Score = 1672 bits (4329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 876/1497 (58%), Positives = 1072/1497 (71%), Gaps = 121/1497 (8%)

Query: 68   CTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDG--DRPNRRLNDFILHDENG 125
            CT FKEKS+R+ EKS  +E KK Q  ++E +A+ LTA +    DRP RRLNDF+L D +G
Sbjct: 37   CTSFKEKSIRVCEKSATIEVKKQQIVEEEFLALRLTALETDVEDRPTRRLNDFVLFDSDG 96

Query: 126  LPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLS 185
            +PQPLEMLEI D+F+SG ILP    +D+EKEKGVRC  FGR+E WSISGYEDGSPVIW+S
Sbjct: 97   VPQPLEMLEIHDIFVSGAILPSDVCTDKEKEKGVRCTSFGRVEHWSISGYEDGSPVIWIS 156

Query: 186  TDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSM- 244
            T++ADYDC KPA+SY+K Y+ F+EKARA + VYKKLSK+SGG+ D  ++ELLA VVRSM 
Sbjct: 157  TELADYDCRKPAASYRKVYDYFYEKARASVAVYKKLSKSSGGDPDIGLEELLAAVVRSMS 216

Query: 245  SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENF 304
            SGSK F  G +I DFVISQG+FI+NQL GLDET+KK++  + E+PVLVAL+E+SSK +  
Sbjct: 217  SGSKYFSSGAAIIDFVISQGDFIYNQLAGLDETAKKHESSYVEIPVLVALREKSSKIDKP 276

Query: 305  VQV-NAASLGGNLAIGSKVGDGDG-KMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQ 362
            +Q     S G  +   S+V + +    DQ    T     D+D + A LLQ+EE  +S +Q
Sbjct: 277  LQRERNPSNGVRIKEVSQVAESEALTSDQMVDGT-----DDDRRYAILLQDEENRKSMQQ 331

Query: 363  -KKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPR 421
             +K   S S  N FYIKINEDEIANDYP P +Y+ SEEE DEL+ YD+ Y+    + LP 
Sbjct: 332  PRKNSSSGSASNMFYIKINEDEIANDYPLPSYYKTSEEETDELILYDASYE-VQSEHLPH 390

Query: 422  RMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCL-DTDSSQCTSG 480
            RMLH+W+LYNSD R ISLELLPMK C+DIDV IFGSG +  D GS   L D DS      
Sbjct: 391  RMLHNWALYNSDLRFISLELLPMKQCDDIDVNIFGSGVVTDDNGSWISLNDPDSG----- 445

Query: 481  VSGAQDAGGFPIYLSSIKEWMIEFGS-SMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKT 539
             S + D  G  I+LS IKEWMIEFGS  +I ISIRTD+AW                    
Sbjct: 446  -SQSHDPDGMCIFLSQIKEWMIEFGSDDIISISIRTDVAWV------------------- 485

Query: 540  ARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQ 599
                         ++RV+RLSF DV KRLS ++ +  +YISSDP AVERY+VVHGQI+LQ
Sbjct: 486  -------------ESRVARLSFADVTKRLSGLQANDKAYISSDPLAVERYLVVHGQIILQ 532

Query: 600  LFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRK 659
            LFA YPD+ +K+C F++GL  K+E+RHHTKW++KKKK+   E+NLNPRA M P V SKRK
Sbjct: 533  LFAVYPDDNVKRCPFVVGLASKLEDRHHTKWIIKKKKISLKELNLNPRAGMAP-VASKRK 591

Query: 660  VMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEE 719
             MQATTTRL+NRIWGE+YSNYSPED  + TA E  EDE  EE G  EE+  EE +    E
Sbjct: 592  AMQATTTRLVNRIWGEFYSNYSPEDPLQATAAENGEDEVEEEGGNGEEEVEEEGENGLTE 651

Query: 720  RQISCSVAVQ-------IKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAV 770
              +   V VQ       I+  S K+EI W+GE + K+  G  LY++A+V GE+V++G AV
Sbjct: 652  DTVPEPVEVQKPHTPKKIRGSSGKREIKWDGESLGKTSAGEPLYQQALVGGEMVAVGGAV 711

Query: 771  LVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDL 830
             +EVD+ D++P IYFVEYMFE+T  CK+ HG  +QRGS TVLGN ANERE+FL N+C   
Sbjct: 712  TLEVDDPDEMPAIYFVEYMFESTDHCKMLHGRFLQRGSMTVLGNAANERELFLTNECMTT 771

Query: 831  ELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERG 890
            +L+DIK     +IRS PWGHQ+RK    ADK+DRARA ERK K LPTEYYCKSLY PERG
Sbjct: 772  QLKDIKGVASFEIRSRPWGHQYRKKNITADKLDRARALERKVKDLPTEYYCKSLYSPERG 831

Query: 891  AFFILPVDSMGLGVGSCHACGTKESEKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHH 949
             FF LP+  +G   G C +C  +E E+++ T K++ S+T F     EY V D+VY++P  
Sbjct: 832  GFFSLPLSDIGRSSGFCTSCKIREDEEKRSTIKLNVSRTGFFINGIEYSVEDFVYVNPDS 891

Query: 950  FTWDKAEGET-FKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008
                K   +T FK+GRN+GL+ YVVCQLLE IVPKE ++A++ S  VKVRRF+RP+D+SA
Sbjct: 892  IGGLKEGSKTSFKSGRNIGLRAYVVCQLLE-IVPKESRKADLGSFDVKVRRFYRPEDVSA 950

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
            EKAY SDI+E+Y+S++T ++   A+ GKCEVRKK+D+P      I  HIFFC+   D SK
Sbjct: 951  EKAYASDIQELYFSQDTVVLPPGALEGKCEVRKKSDMPLSREYPISDHIFFCDLFFDTSK 1010

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
            GSLKQLPA++K ++S  ++  +   R+KKGK +E E E E+ K     +E  LATLDIFA
Sbjct: 1011 GSLKQLPANMKPKFS--TIKDDTLLRKKKGKGVESEIESEIVKPVEPPKEIRLATLDIFA 1068

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            GCGGLS GL+++G+S  KWAIEYEEPAG+AFK NHPES + ++NCNVILRA+MEK GD +
Sbjct: 1069 GCGGLSHGLKKAGVSDAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAIMEKGGDQD 1128

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            DCVST+EA ELAA L E   + LPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMI
Sbjct: 1129 DCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMI 1188

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            LAFLSFADYF+PRYFLLENVR FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+GVSQ
Sbjct: 1189 LAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQ 1248

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            SRKRAFIWAA+P + LPEWPEPMHVF  P+LKI LS    Y+AVRSTA GAPFR +TVRD
Sbjct: 1249 SRKRAFIWAAAPEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRD 1308

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            TIGDLP+V NG S+T  E                   L+D                    
Sbjct: 1309 TIGDLPSVENGDSRTNKE-----------------VTLSD-------------------- 1331

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
                             G+V ++IP+CLPNTA+RHN WKGL+GRLDW+GNFPTS+TDPQP
Sbjct: 1332 -----------------GRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQP 1374

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            MGKVGMCFHP+Q RILTVRECARSQGFPDSY+F G+I HKHRQIGNAVPP LAFALG
Sbjct: 1375 MGKVGMCFHPEQHRILTVRECARSQGFPDSYEFAGNINHKHRQIGNAVPPPLAFALG 1431


>gi|242043138|ref|XP_002459440.1| hypothetical protein SORBIDRAFT_02g004680 [Sorghum bicolor]
 gi|241922817|gb|EER95961.1| hypothetical protein SORBIDRAFT_02g004680 [Sorghum bicolor]
          Length = 1397

 Score = 1558 bits (4034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/1229 (62%), Positives = 937/1229 (76%), Gaps = 33/1229 (2%)

Query: 340  DEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEE 399
            +ED+DAKLARLLQ+EE W+  K+++ +  T      YIKI+E EIANDYP P +Y+P  +
Sbjct: 180  EEDDDAKLARLLQQEEEWKMMKKQRGRRGTPSQKNVYIKISEAEIANDYPLPAYYKPFSQ 239

Query: 400  EFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGK 459
            E DE +    D      D +P R+L++W+LYN+DSRLISLEL+PMK   + DV +FGSG 
Sbjct: 240  EMDEYIFDSDDSIF--SDDVPVRILNNWTLYNADSRLISLELIPMKSGAENDVVVFGSGF 297

Query: 460  MISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAW 519
            M  D+GS           +S     Q   G PIYLS IKEW+IEFG SMI I+IRTD+AW
Sbjct: 298  MRDDDGSCCSTAESVKSSSSSSKADQQDAGVPIYLSPIKEWLIEFGGSMICITIRTDVAW 357

Query: 520  YRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYI 579
            Y+L +P+KQYAPW EPVLKTAR+A+SIIT+LKEQ+R S+LSF DVIK+++E  K   ++I
Sbjct: 358  YKLRQPTKQYAPWCEPVLKTARLAVSIITLLKEQSRASKLSFADVIKKVAEFDKGNPAFI 417

Query: 580  SSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQ 638
            SS+ A VERY+VVHGQI+LQ FA++PDE I++ AF+ GL+ KME+R HTK ++KKK +V 
Sbjct: 418  SSNIALVERYIVVHGQIILQQFADFPDETIRRSAFVSGLLLKMEQRRHTKLVMKKKTQVM 477

Query: 639  KSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEE 698
            + E NLNP A+MGP   S+RK M+ATTTRLINRIW +YY+++ PED KE    EA E ++
Sbjct: 478  RGE-NLNPSAAMGPA--SRRKAMRATTTRLINRIWSDYYAHHFPEDSKEGDGNEAKEVDD 534

Query: 699  VEEQ---------GENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK- 748
             +E+         G+ EED   +    +  R++            T KEI WEGE   K 
Sbjct: 535  EQEENEDEDAEDEGQIEEDKISKTPPSTRSRKLLSQ---------TCKEIRWEGETSGKT 585

Query: 749  -SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRG 807
             SG  LYK A V    + +G  V++E D  D   V+ FVEYMF+ +GG K+ HG I+Q+G
Sbjct: 586  SSGETLYKCAYVRELRIPVGGTVVLEDDSGDT--VMCFVEYMFQKSGGAKMVHGRILQKG 643

Query: 808  SHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARA 867
            SHT+L N ANEREVFL N C + +L DIK+ V VDI+S PWGH++RK+ +  DKV++A+A
Sbjct: 644  SHTILDNAANEREVFLTNDCLEFKLDDIKELVSVDIQSRPWGHKYRKENSETDKVEQAKA 703

Query: 868  EERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSK 927
            EERKKKGLP  Y+CKSLYWPE+GAFF LP D MGLG G C +C  +  E + +  KV SK
Sbjct: 704  EERKKKGLPMVYFCKSLYWPEKGAFFALPRDKMGLGSGVCSSC--EHIEPDSDELKVLSK 761

Query: 928  TSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKR 987
            TSFVY    Y V+D++YI P  F+ D+    TFKAGRNVGLKPY VCQ+L I      K+
Sbjct: 762  TSFVYRKVTYNVNDFLYIRPDFFSEDEDRA-TFKAGRNVGLKPYAVCQILAIPEGAGSKK 820

Query: 988  AEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPA 1047
                S  +  RRF+RPDDIS  KAY SDIREVYYSE+   + V+ I GKCEVRKKND+ +
Sbjct: 821  LNPASANISARRFYRPDDISTAKAYASDIREVYYSEDVIDVPVDMIEGKCEVRKKNDLAS 880

Query: 1048 CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
             + P +F+H+FFCE ++D + G+LKQLP ++  R+ S    +  AS++ KGK I   D++
Sbjct: 881  SDLPVMFEHVFFCELIYDRASGALKQLPPNV--RFMSMVQKATIASKKNKGKQICETDQI 938

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
            +  K     +EN LATLDIFAGCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE++
Sbjct: 939  DSGKWLDVPKENRLATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFSKNHPEAV 998

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
            + ++NCNVIL+A+M+KCGD +DC+STSEAAE AA L E  INNLP+PG+V+FINGGPPCQ
Sbjct: 999  VFVDNCNVILKAIMDKCGDTDDCISTSEAAEQAAKLPELNINNLPVPGEVEFINGGPPCQ 1058

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            GFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRL +ASL
Sbjct: 1059 GFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLAVASL 1118

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
            LEMGYQVRFGILEAGAFGV+QSRKRAFIWAA+P + LP+WPEPMHVFA+PELKI L D  
Sbjct: 1119 LEMGYQVRFGILEAGAFGVAQSRKRAFIWAAAPGEMLPDWPEPMHVFASPELKITLPDGQ 1178

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
             Y+A RSTA GAPFRA+TVRDTIGDLP V NGASK  +EY  +PVSWFQK+IRGNM VL 
Sbjct: 1179 YYAAARSTAGGAPFRAITVRDTIGDLPKVENGASKLTLEYGGEPVSWFQKKIRGNMMVLN 1238

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            DHISKEMNELNLIRCQ IPKRPG DWHDLPDEKVKLS GQ+ DLIPWCLPNTAKRHNQWK
Sbjct: 1239 DHISKEMNELNLIRCQHIPKRPGCDWHDLPDEKVKLSNGQMADLIPWCLPNTAKRHNQWK 1298

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            GL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPDSY+F G+IQ+
Sbjct: 1299 GLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDSYEFAGNIQN 1358

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            KHRQIGNAVPP LA+ALGRKLKEAV++KR
Sbjct: 1359 KHRQIGNAVPPPLAYALGRKLKEAVDNKR 1387



 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 14/157 (8%)

Query: 35  PETKDSTSGQKEKMKKLSQDSEE-------------PRKRPKRMAACTDFKEKSVRISEK 81
           P+ K+  S +  K++  SQD+ E              RKRP+R AAC+DFKEKS+R+SEK
Sbjct: 16  PQKKEKESTENSKLENGSQDATEEVHHGVEKGDGHVTRKRPRRAAACSDFKEKSIRLSEK 75

Query: 82  SYLVEAKKDQYADDEIVAVGLTARQDGDRPN-RRLNDFILHDENGLPQPLEMLEIDDLFI 140
             +V  KK++  ++EI AV LT     D P  R+L DFILHD  G PQP EM EIDD FI
Sbjct: 76  KSVVMVKKNRMEEEEIDAVSLTKLGPEDPPPCRKLIDFILHDAEGNPQPFEMSEIDDFFI 135

Query: 141 SGLILPLQESSDREKEKGVRCEGFGRIESWSISGYED 177
           + LI+P+ +  ++E+E+GVRCEGFGRIE W+ISGY++
Sbjct: 136 TALIMPMDDDLEKERERGVRCEGFGRIEDWNISGYDE 172


>gi|15236318|ref|NP_193097.1| DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|4678387|emb|CAB41119.1| DNA (cytosine-5-)-methyltransferase-like protein [Arabidopsis
            thaliana]
 gi|7268065|emb|CAB78403.1| DNA (cytosine-5-)-methyltransferase-like protein [Arabidopsis
            thaliana]
 gi|332657902|gb|AEE83302.1| DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
          Length = 1404

 Score = 1545 bits (4000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/1422 (55%), Positives = 1005/1422 (70%), Gaps = 102/1422 (7%)

Query: 152  DREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKA 211
            D ++EKGVR + FGR+E+W+ISGYEDGSPVIW+ST IADYDC KP+  YKK Y+ FFEKA
Sbjct: 59   DEKEEKGVRFQSFGRVENWTISGYEDGSPVIWISTVIADYDCRKPSKKYKKLYDYFFEKA 118

Query: 212  RACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQL 271
             AC+EV K LS     N D S+ ELLA VVRSM+G K F  G  I++FVISQGEFI+NQL
Sbjct: 119  CACVEVCKNLST----NPDTSLKELLAAVVRSMNGRKIFSSGGVIQEFVISQGEFIYNQL 174

Query: 272  IGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIG-SKVGDGDGKMD 330
             GLDETSK ++ KF +  VLV+L++ES K      ++ A     L I  SKV   D  MD
Sbjct: 175  AGLDETSKNHETKFVDNRVLVSLRDESRK------IHKAFSNVALRIDESKVLTSDQLMD 228

Query: 331  QYGSSTCPADEDEDAKLARLLQEEELWQS--KKQKKTQGSTSGMNKFYIKINEDEIANDY 388
                      EDED K A+LLQEEE  +S  + + K   +TS  NKFYIKINEDEIA+DY
Sbjct: 229  --------GGEDEDLKYAKLLQEEEHMKSMDRSRNKRSSTTSAPNKFYIKINEDEIAHDY 280

Query: 389  PFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCE 448
            P P +Y+ +++E DEL+ +++ Y + D   LP R LH+W+LYNSD  LISLE LPMKPC 
Sbjct: 281  PLPSYYKNTKDETDELVLFNAGY-AVDARNLPCRTLHNWALYNSDLMLISLEFLPMKPCA 339

Query: 449  DIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSM 508
            DIDVT                                       YL  IKEW I+FG  M
Sbjct: 340  DIDVT---------------------------------------YLGQIKEWKIDFGEDM 360

Query: 509  IFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRL 568
            IF+ +RTD+AWYRLGKPS+QYAPW+EP+LKT R+  SI+ +LK +TR+++LS+TDVIKRL
Sbjct: 361  IFVLLRTDMAWYRLGKPSEQYAPWFEPILKTVRIGTSILALLKNETRMAKLSYTDVIKRL 420

Query: 569  SEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHT 628
              ++++  +YISS    VERYV+VHGQI+LQ   E PDE IK+C F+ GL  KM++RHHT
Sbjct: 421  CGLEENDQAYISSTFFDVERYVIVHGQIILQFLTECPDEYIKRCPFVTGLASKMQDRHHT 480

Query: 629  KWLVKKKK--VQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGK 686
            KW++KKK+  +QK E NLN R    P V SK K MQATTTRLINRIWGE+YS YSPED  
Sbjct: 481  KWIIKKKRKMLQKGE-NLNLRRGKAPKV-SKMKAMQATTTRLINRIWGEFYSIYSPEDPL 538

Query: 687  EETACEANEDEEVEEQGENEEDDTEE-EKLISEERQISCSVAVQIKSRSTKKEITWEGEC 745
            EE   E   +E  + + E+E ++ +  +K I  ++        +I+    + EI WEGE 
Sbjct: 539  EEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQK---ADTLKKIRGSCKEMEIRWEGEI 595

Query: 746  VRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGII 803
            + ++  G  LY +A+V G  + +G AV++EVD+  + P+IYFVEYMFE++   K  HG +
Sbjct: 596  LGETCAGEPLYGQALVGGRKMDVGGAVILEVDDQGETPLIYFVEYMFESSDNSKKLHGKL 655

Query: 804  MQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVD 863
            +QRGS TVLG  ANERE+FL N+C  ++L+DIK TV  +IRS PWGHQ++K+   ADK+D
Sbjct: 656  LQRGSETVLGTAANERELFLTNECLTVQLKDIKGTVSFEIRSRPWGHQYKKEHMAADKLD 715

Query: 864  RARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFK 923
            RARAEERK K LP EYYCKSLY PE+G FF LP   MGLG G C +C  +E+E+E+   K
Sbjct: 716  RARAEERKAKDLPIEYYCKSLYSPEKGGFFSLPRSDMGLGSGFCSSCKIRENEEERSKTK 775

Query: 924  VH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGE-TFKAGRNVGLKPYVVCQLLEIIV 981
            ++ SKT F+    +Y V D+VY  P++ + D+ +    FK GRNVGL+ +VVCQ+L+I+ 
Sbjct: 776  LNDSKTRFLSNGIKYSVGDFVYQIPNYLSKDRGKRRPVFKYGRNVGLRAFVVCQILDIVD 835

Query: 982  PKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRK 1041
             KEPK+    S +VKVRRF+RPDD+SAE+AY SDI+EVYYSE+T+++  EAI GKCEV K
Sbjct: 836  LKEPKKGNTTSFEVKVRRFYRPDDVSAEEAYASDIQEVYYSEDTYILPPEAIKGKCEVMK 895

Query: 1042 KNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCI 1101
            K D+P C    I  H++FC+  +D S G LK+LP ++ L++S+  +  +   R KK +  
Sbjct: 896  KTDMPLCREYPILDHVYFCDRFYDSSNGCLKKLPYNMMLKFST--IKDDTLLREKKTET- 952

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
                   + K     +   LATLDIFAGCGGLS GL+++G+S TKWAIEYEEPA +AFK 
Sbjct: 953  ---GSAMLLKPDEVPKGKRLATLDIFAGCGGLSYGLEKAGVSDTKWAIEYEEPAAQAFKQ 1009

Query: 1162 NHPESLMLINNCNVILR-----------AVMEKCGDAEDCVSTSEAAELAASLDENVINN 1210
            NHP++ + ++NCNVILR           A+MEKCGD +DC+ST+EAAELA  LDEN  + 
Sbjct: 1010 NHPKTTVFVDNCNVILRISWLRLLINDRAIMEKCGDVDDCISTTEAAELATKLDENQKST 1069

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRN 1270
            LPLPGQVDFI+GGPPCQGFS +NRF+  +WSK QC+MILAFLSFADYF+P+YFLLENV+ 
Sbjct: 1070 LPLPGQVDFISGGPPCQGFSRLNRFSDGSWSKNQCQMILAFLSFADYFRPKYFLLENVKT 1129

Query: 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
            FVSFN+G TF LT+ASLLEMGYQVRFG+LEAGA+G+SQ RKRAFIWAA+P++ LPEWPEP
Sbjct: 1130 FVSFNEGHTFHLTVASLLEMGYQVRFGLLEAGAYGISQPRKRAFIWAAAPNEVLPEWPEP 1189

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
            MHVF  P  KI LS    Y+AV+ST  GAPFR++TVRD IGDLP + +G SK   E    
Sbjct: 1190 MHVFNNPGFKIPLSQGLHYAAVQSTKFGAPFRSITVRDAIGDLPPIESGESKINKE---- 1245

Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
                    +RG+M VLTDHI K+MNELNLIRC+KIPK PGADW DLPDE V LS G V +
Sbjct: 1246 -------EMRGSMTVLTDHICKKMNELNLIRCKKIPKTPGADWRDLPDEHVNLSNGIVKN 1298

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            ++P  L N AK HN +KGL+GRLDW GN PT IT+ QPMG VGMCFHPDQDRI++VRECA
Sbjct: 1299 IVPNLL-NKAKDHNGYKGLYGRLDWHGNLPTCITNLQPMGLVGMCFHPDQDRIISVRECA 1357

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            RSQGFPDSY+F G+I+ KHRQ+GNAVPP LAFALGRKLKEA+
Sbjct: 1358 RSQGFPDSYKFSGNIKDKHRQVGNAVPPPLAFALGRKLKEAL 1399


>gi|302760531|ref|XP_002963688.1| hypothetical protein SELMODRAFT_80009 [Selaginella moellendorffii]
 gi|300168956|gb|EFJ35559.1| hypothetical protein SELMODRAFT_80009 [Selaginella moellendorffii]
          Length = 1471

 Score = 1426 bits (3692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 755/1489 (50%), Positives = 984/1489 (66%), Gaps = 112/1489 (7%)

Query: 84   LVEAKKD-QYADDEIVAVGLTARQDGD----RPNRRLNDFILHDENGLPQPLEMLEIDDL 138
            ++E K + + AD E  A+ +  R+ G+    +P RRL DF++HD  G  QP+E+LE   L
Sbjct: 80   VIEVKPEPRLADSEATAI-MRTREGGEGKKEKPQRRLLDFVVHDGQGAEQPIEILETVPL 138

Query: 139  FISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPAS 198
            F++  ILP+  +   EK++G RCE FG +ESW ISGYEDG  V+W+ T+  DY C KPA+
Sbjct: 139  FVTATILPV--TGLLEKQRGFRCESFGPLESWCISGYEDGVLVVWICTEAGDYICCKPAA 196

Query: 199  SYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKD 258
            SYK +Y    +K+  CI V+K LSK  GG+ +  ++ L+A V R     K        ++
Sbjct: 197  SYKTWYSALADKSSLCIAVFKALSKPDGGDPELPLESLVAQVARR--SKKTALSQPFSRE 254

Query: 259  FVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESS--KRENFVQVNAASLGGNL 316
            ++IS G F+ +QL  +D ++   DQ F  LP LVAL++ES+  + E+    +     G L
Sbjct: 255  YLISIGGFVSSQLKAMDVSASDGDQVFTGLPALVALEKESASCRMEDVSLASHGRKNGTL 314

Query: 317  AIGSKVGDG------DGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTS 370
             I    G         G  DQY           DA+ A+LLQE E  +   + ++ G+ +
Sbjct: 315  TINEPDGSNPSSEHSSGLTDQYAG---------DAQYAQLLQERE--ERAMRMRSGGAKA 363

Query: 371  GMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLY 430
               K YIKINEDE+A DYP P FY+P EEE DE L       S D  +L  RML+DW+LY
Sbjct: 364  ---KSYIKINEDELAVDYPLPEFYKPEEEETDEYLVM-----SGDDGELEHRMLYDWALY 415

Query: 431  NSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGF 490
            NSD R +SLELLPM    + DV +FGSG +++++   +C+D +        S   +    
Sbjct: 416  NSDMRFVSLELLPMVSGAETDVEVFGSG-LVTEDNFEYCMDNEPDD---AASTTHNENLL 471

Query: 491  PIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITML 550
             +YLSSIKEW IEFG+ ++ ISIRT  AWYRLG PS QYA WY PVLKTAR+A  IITML
Sbjct: 472  RVYLSSIKEWKIEFGAKILSISIRTAGAWYRLGPPSAQYAAWYSPVLKTARLARHIITML 531

Query: 551  KEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIK 610
            K  +RVSRLSF DV+KRL++  +D  +++ S  A VER+VVVHGQI+LQ F+E+PD+ I+
Sbjct: 532  KVVSRVSRLSFPDVVKRLTDQTQDSDTFVGSKVADVERFVVVHGQILLQQFSEFPDDTIR 591

Query: 611  KCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLIN 670
            K +F+ GL+K MEERHHTK  V KKK+ +   NLNPR S+ P   SK K M+ATTT+L+N
Sbjct: 592  KSSFVTGLLKMMEERHHTKLKVSKKKLLRGR-NLNPRGSLQPDA-SKTKPMRATTTQLVN 649

Query: 671  RIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQI 730
            RIW +Y S Y+ EDG     CE  E E V  Q + + D                      
Sbjct: 650  RIWSDYCSTYN-EDG----TCEP-EAENVRRQQDQKAD---------------------- 681

Query: 731  KSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMF 790
                                     KAI  G ++  G AV  EV+  +       VEY++
Sbjct: 682  ------------------------AKAI-RGHLIKPGEAVGYEVEGAED--AFLLVEYLY 714

Query: 791  EATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGH 850
            +A G   + HG ++ +G  TVLG+ A++RE+FL   C ++E++D K+ V V++R  PWGH
Sbjct: 715  KANGR-SMVHGRVLVKGESTVLGDAASKRELFLTGSCDNVEVRDAKEIVKVELRRRPWGH 773

Query: 851  QHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHAC 910
             HRKD A AD+ +R RA +R+ KGLPTEY+ ++LY PE+G FF +P D + LG G C  C
Sbjct: 774  MHRKDNATADEEERERARDREIKGLPTEYFFQALYVPEKGGFFRIPHDKLALGTGVCEGC 833

Query: 911  GTKESEKEKETFKVHSKT-SFVYGTAEYFVHDYVYIS-PHHFTWDKAEGETFKAGRNVGL 968
             ++E  K K++  + +    F +   EY ++D+VY+      T  + E + FK GRN GL
Sbjct: 834  KSREEAKTKDSLSLFANLQGFRFQGVEYHINDFVYVDITQIMTQSQDEIQKFKGGRNKGL 893

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLI 1028
            + + +CQL+++I P     AE    Q+ VR+F+RP+D+   KAY +D+ EVY+ E T  I
Sbjct: 894  RAFTICQLMDVI-PSSKTGAE----QLTVRKFYRPEDVDLGKAYKADVHEVYFCERTTTI 948

Query: 1029 FVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLD 1088
             + A+ GKC V K+ +    +       +FFC  ++DP KG++KQLPA++KL      + 
Sbjct: 949  SLAAVRGKCTVVKRQEFTVASETKALMDLFFCSCVYDPLKGTVKQLPANVKL--GKPPVA 1006

Query: 1089 SEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWA 1148
            S  AS + KGK +E + +    K+  A+ E  L+ LDIFAGCGGLSEG+ QSGI+STKWA
Sbjct: 1007 SSLASAKGKGKLVEDDRQ---PKETSANDEK-LSMLDIFAGCGGLSEGIHQSGIASTKWA 1062

Query: 1149 IEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVI 1208
            IEY+  A EAFK+NHP + +  +NCNV+LR++ME  GD +DC ST EAAE+A+ L EN  
Sbjct: 1063 IEYDHAAAEAFKMNHPTATVFFDNCNVVLRSIMEIGGDLDDCCSTPEAAEMASKLSENQK 1122

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            ++LP PG+VDFI+GGPPCQGFSGMNRFN+  WSK+QCEM+L FLS+ADYF+PRYFLLENV
Sbjct: 1123 SSLPRPGEVDFISGGPPCQGFSGMNRFNKRNWSKIQCEMVLGFLSYADYFRPRYFLLENV 1182

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
            RNFVSFNKGQTFRLTLASLLEMGYQVRFGIL+AG +G+SQSR RA IWAA+P + LP+WP
Sbjct: 1183 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILQAGHYGISQSRTRAIIWAAAPDEVLPDWP 1242

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
            EP+HVFA+ +LKI LS N  Y+A   T  GAP R++TVRDTIGDLP V NG  K    Y 
Sbjct: 1243 EPVHVFASAQLKIPLSGNSVYAAADDTRGGAPLRSITVRDTIGDLPPVANGTEKPETPYG 1302

Query: 1389 NDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQV 1448
            N+P SWFQK IRG   VL DHI KEMNELN IRCQ+IPKRPGADW DLPDEKVKLSTGQ 
Sbjct: 1303 NEPQSWFQKNIRGGATVLRDHICKEMNELNFIRCQRIPKRPGADWRDLPDEKVKLSTGQT 1362

Query: 1449 VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRE 1508
            VDLIPWCLPNTA+RHNQWKGLFGRLDW+GNFPTSITDPQPMGKVGMCFHP+QDRI+TVRE
Sbjct: 1363 VDLIPWCLPNTAERHNQWKGLFGRLDWDGNFPTSITDPQPMGKVGMCFHPEQDRIVTVRE 1422

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            CARSQGFPDSY+F G++Q+KHRQIGNAVPP LA ALG KLKEA+    S
Sbjct: 1423 CARSQGFPDSYKFFGTMQNKHRQIGNAVPPPLAKALGVKLKEAIRQASS 1471


>gi|168010951|ref|XP_001758167.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690623|gb|EDQ76989.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1579

 Score = 1419 bits (3673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 754/1539 (48%), Positives = 991/1539 (64%), Gaps = 69/1539 (4%)

Query: 59   RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDF 118
            R RPKR AA T  KE    I E  Y V  K ++    E  A+ LT+++  +  +R L DF
Sbjct: 51   RPRPKRAAASTSLKEVHHEI-EAQY-VTPKDEKIPMLEQEALVLTSQEKDE--SRLLLDF 106

Query: 119  ILHDENGLPQPLEMLEIDDLFISGLILPLQES-SDREKEKGVRCEGFGRIESWSISGYED 177
             +HD  G  QPL+++   +++++ L+ P   S    +K K V CE  G I  W I GY+ 
Sbjct: 107  FIHDGEGETQPLDVVGSHEVYVTCLMAPHTSSIVSIDKSKAVLCESMGPILEWGIEGYDK 166

Query: 178  GSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELL 237
            G P +++ T ++ Y  ++P+  YKK++ L  EK   C+EVY+ LS ++GG+    +++L 
Sbjct: 167  GEPSVYIGTGLSFYTLVQPSGRYKKHFNLLLEKVTVCVEVYRALSPSTGGDPQLGLNDLF 226

Query: 238  AGVVRSM-SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKE 296
            A V RS+ SG          +D++I QG FI  QL  LD  +  ++Q F+ LP +  L+ 
Sbjct: 227  ARVARSLRSGKYSSALQFFTRDYLIEQGGFIAGQLKALDGNADDDEQLFSGLPAIDVLES 286

Query: 297  ESSKREN---FVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQE 353
            E  KR      V V   +L    A  S   +G     +          D D KLAR LQE
Sbjct: 287  ECLKRATQRWSVDVKPEALKIKDASAS---NGTSSKFEENDDQEQGGMDADEKLARHLQE 343

Query: 354  EELWQ-SKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYD 412
             E    + +  + Q +  G  K YIKINE EIANDYP P +Y+  E+E DE L +D D  
Sbjct: 344  MENRNLASRNGRNQPAGKG-RKVYIKINEAEIANDYPLPAYYKAEEDETDEYLFFDDDNA 402

Query: 413  SCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDT 472
                 +LP+RMLHDW+LYNSDSRL+SLELLPM    + D  IFGSG M  DE S F  D 
Sbjct: 403  ILAPHELPQRMLHDWTLYNSDSRLVSLELLPMLSGVETDAEIFGSGMMTEDEDSAFTFDD 462

Query: 473  DSSQCTSGVSGAQDAG---------------GFPIYLSSIKEWMIEFGSSMIFISIRTDL 517
            +  + +S +     +                G  +YLS+IKEWMIEFG++MIFISIRTD 
Sbjct: 463  EDGEVSSSLIETTSSSSNGNGISHKRNSIPQGIRLYLSAIKEWMIEFGANMIFISIRTDG 522

Query: 518  AWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHS 577
            AWYRLGKPSKQY PWY PV+KTAR+A+  ITMLK+Q RVSRLSF+D++KRL++  K+   
Sbjct: 523  AWYRLGKPSKQYRPWYAPVMKTARLAVKAITMLKQQQRVSRLSFSDIVKRLTDYLKEDSK 582

Query: 578  YISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKK- 636
            +     A VERY+VVHGQI+LQ FAEYP+EQI++ AF+ GL+ KMEE+HH K  V KK  
Sbjct: 583  FNFVKAADVERYLVVHGQIILQQFAEYPEEQIRRSAFVTGLIAKMEEKHHVKLTVSKKTT 642

Query: 637  VQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANED 696
            V K   NLNPRA + P    K K M+ATTT L+NRIW  YY+ ++   G+  T  +    
Sbjct: 643  VIKKGRNLNPRAHLQPDA-KKSKPMRATTTILVNRIWSNYYTKFN-LSGEMPTVIK---- 696

Query: 697  EEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLAL--Y 754
                     EE+    ++  SEE +              + E        + S L L   
Sbjct: 697  ---------EEETVVAKEDKSEEEEEEEDDDDDEDEDEEELEDDSSAPAPKPSALTLKKV 747

Query: 755  KKAIVHGEVVSLGSAVLVEVDE----LDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHT 810
            KK  V    + +G AVLV +D+     ++LP +  VEY++++     + HG ++   + T
Sbjct: 748  KKINVDRSEIVVGEAVLVNLDDDTVDSEKLPSMLLVEYLYDSRDKTPMLHGRVLVGATET 807

Query: 811  VLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEER 870
            VLGN  ++REVFL N C D+E+  + Q VVV+++     ++ RK  A AD+ +RARA+ER
Sbjct: 808  VLGNAGDDREVFLTNNCADVEISGV-QKVVVNMKRRTESYKDRKTNALADEAERARAKER 866

Query: 871  KKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVG--SCHACGTKESEKEKETFKVHSKT 928
            + +GLP EY+C+++Y P++GAFF LP    GL VG  SC  C  ++ E++     +    
Sbjct: 867  ELQGLPKEYFCRAVYSPDKGAFFSLPTREQGLAVGNGSCKTCIQRDEEEKMSAPALLDVG 926

Query: 929  SFVYGTAEYFVHDYVYISPHHFTW----DKAEGET-FKAGRNVGLKPYVVCQLLEIIVPK 983
             F     EY + DY+Y+    F +    D+ E E  FK GRN GL+P+ VCQLL +   +
Sbjct: 927  GFRLEGVEYRIGDYLYVDSTVFKFLVNKDEPEAEVVFKGGRNKGLRPFAVCQLLSV---Q 983

Query: 984  EPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKN 1043
            +  R+ V +T++ V+RF+RPDD  + +AY +D+ EVYYSE+T  + +  + G+C+V +  
Sbjct: 984  KANRSNVLATKINVQRFYRPDDFGSHRAYVADVHEVYYSEDTVTVEISTVRGRCDVLRPG 1043

Query: 1044 DIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKL----RYSSGSLDSEAASRRKKGK 1099
             +   +  + F H+F C  + DP  G++KQLPA +KL    R +  + +S AA+  K   
Sbjct: 1044 PVIDSSIRSEFHHLFLCSRVCDPKTGTVKQLPATVKLSSYCRLTDNTKNSSAAAELKAKA 1103

Query: 1100 CIEG---EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAG 1156
              +G   EDE      G  + +N LATLDIFAGCGGLSEGL+Q+G+++TKWAIEYE PA 
Sbjct: 1104 KGKGKAIEDEDNPSSAGLTACDNRLATLDIFAGCGGLSEGLRQAGVATTKWAIEYEHPAS 1163

Query: 1157 EAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ 1216
            EAF LNHPE+ +   NCNVILR +ME+ GD+++C+ST +A E+A++L +     LP  G+
Sbjct: 1164 EAFNLNHPETNVFCENCNVILRCIMERGGDSDECLSTPDAQEMASALSDEKKKLLPAQGE 1223

Query: 1217 VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276
            VDFINGGPPCQGFSGMNRFN   WSKVQCEMIL FLS+A+YF+PRYFLLENVRNFVSFNK
Sbjct: 1224 VDFINGGPPCQGFSGMNRFNTGAWSKVQCEMILGFLSYAEYFRPRYFLLENVRNFVSFNK 1283

Query: 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
            GQTFRLTLA+LLEMGYQVRFG+L+AG +GVSQSRKRAFIWAA+P++ LPEWPEPMHVF +
Sbjct: 1284 GQTFRLTLATLLEMGYQVRFGVLQAGNYGVSQSRKRAFIWAAAPNEILPEWPEPMHVFGS 1343

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
             +LKI L     Y+AVR    GAP RAMTV+DTI DLP V NGASK  ++Y + PVSWFQ
Sbjct: 1344 SQLKIALPGGASYAAVRDAGKGAPLRAMTVKDTIYDLPPVENGASKEEIKYSDPPVSWFQ 1403

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
            K+IRGN   L DHI+KEMNELNL RC+ IPK PGADW  LPD K+KLSTG +VDLIPWCL
Sbjct: 1404 KQIRGNETALYDHIAKEMNELNLERCKHIPKYPGADWRTLPDIKIKLSTGTMVDLIPWCL 1463

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
            PNTA RHNQWKGLFGRLDW+GNFPTS+TDPQPMGKVGMCFHP+QDRI+TVRECARSQGFP
Sbjct: 1464 PNTADRHNQWKGLFGRLDWDGNFPTSVTDPQPMGKVGMCFHPEQDRIVTVRECARSQGFP 1523

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            DSY+F G+IQ KHRQIGNAVPP LA ALG  LK A+  K
Sbjct: 1524 DSYKFSGTIQSKHRQIGNAVPPPLARALGLMLKAAIRLK 1562


>gi|302786012|ref|XP_002974777.1| hypothetical protein SELMODRAFT_232368 [Selaginella moellendorffii]
 gi|300157672|gb|EFJ24297.1| hypothetical protein SELMODRAFT_232368 [Selaginella moellendorffii]
          Length = 1335

 Score = 1408 bits (3645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1456 (50%), Positives = 959/1456 (65%), Gaps = 139/1456 (9%)

Query: 109  DRPNRRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIE 168
            ++P RRL DF++HD  G  QP+E+LE   LF++  ILP+  +   EK++G RC+ FG +E
Sbjct: 12   EKPQRRLLDFVVHDGQGAEQPIEILETVPLFVTATILPV--TGLLEKQRGFRCQSFGPLE 69

Query: 169  SWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGN 228
            SW ISGYEDG  V+W+ T+  DY C KPA+SYK +Y    +K+  CI V+K LSK  GG+
Sbjct: 70   SWCISGYEDGVLVVWICTEAGDYICCKPAASYKTWYSALADKSSLCIAVFKALSKPDGGD 129

Query: 229  SDCSIDELLAGVVR---SMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKF 285
             +  ++ L+A V R     S S+ F      ++++IS G F+ +QL  +D ++   DQ F
Sbjct: 130  PELPLESLVAQVARRSKKTSLSQPFS-----REYLISIGGFVSSQLKAMDVSASDGDQVF 184

Query: 286  AELPVLVALKEESSKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDA 345
              LP L                                   G  DQY           DA
Sbjct: 185  TGLPAL--------------------------------HSSGLTDQYAG---------DA 203

Query: 346  KLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELL 405
            + A+LLQE E  +   + ++ G+ +   K YIKINEDE+A DYPFP FY+P EEE DE L
Sbjct: 204  QYAQLLQERE--ERAMRMRSGGAKA---KSYIKINEDELAVDYPFPEFYKPEEEETDEYL 258

Query: 406  AYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEG 465
                   S D  +L  RML+DW+LYNSD R +SLELLPM    + DV +FGSG +++++ 
Sbjct: 259  VM-----SGDDGELEHRMLYDWALYNSDMRFVSLELLPMVSGAETDVEVFGSG-LVTEDN 312

Query: 466  SGFCLDTDSSQCTSGVSGAQDAGGFPI--YLSSIKEWMIEFGSSMIFISIRTDLAWYRLG 523
              +C+D +  +            GF +  YLSSIKEW IEFG+ ++ ISIRT  AWYRLG
Sbjct: 313  FEYCMDNEPGKSAK----LYQPKGFILLFYLSSIKEWKIEFGAKILSISIRTAGAWYRLG 368

Query: 524  KPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDP 583
             PS QYA WY PVLKTAR+A  IITMLK  +RVSRLSF DV+KRL++  +D  +++ S  
Sbjct: 369  PPSAQYAAWYSPVLKTARLARHIITMLKVVSRVSRLSFPDVVKRLTDQTQDSDTFVGSKV 428

Query: 584  AAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEIN 643
            A VER+VVVHGQI+LQ F+E+PD+ I+K +F+ GL+K MEERHHTK  V KKK+ +   N
Sbjct: 429  ADVERFVVVHGQILLQQFSEFPDDTIRKSSFVTGLLKMMEERHHTKLKVSKKKLLRGR-N 487

Query: 644  LNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEVEEQG 703
            LNPR S+ P   SK K M+ATTT+L+NRIW +Y S Y+ EDG     CE  E E V  Q 
Sbjct: 488  LNPRGSLQPDA-SKTKPMRATTTQLVNRIWSDYCSTYN-EDG----TCEP-EAENVRRQQ 540

Query: 704  ENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEV 763
            + + D                                               KAI  G +
Sbjct: 541  DQKAD----------------------------------------------AKAI-RGHL 553

Query: 764  VSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFL 823
            +  G AV  EV+  +       VEY+++A G   + HG ++ +G  TVLG+ A++RE+FL
Sbjct: 554  IKPGEAVRYEVEGAED--AFLLVEYLYKANGR-SMVHGRVLVKGESTVLGDAASKRELFL 610

Query: 824  ANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKS 883
               C ++E++D K+ V V++R  PWGH HRKD A AD+ +R R  +R+ KGLPTEY+C++
Sbjct: 611  TGSCDNVEVRDAKEIVTVELRRRPWGHMHRKDNATADEEERERGRDREIKGLPTEYFCQA 670

Query: 884  LYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKT-SFVYGTAEYFVHDY 942
            +Y PE+G FF +P D + LG G C  C ++E  K K++  + +    F +   EY ++D+
Sbjct: 671  IYVPEKGGFFRIPHDKLALGTGVCEGCKSREEAKTKDSLSLFANLQGFRFQGVEYHINDF 730

Query: 943  VYIS-PHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFF 1001
            VY+      T  + E + FK GRN GL+ + +CQL++II P     AE    Q+ VR+F+
Sbjct: 731  VYVDITQIMTQSQDEIQKFKGGRNKGLRAFTICQLMDII-PSSKTGAE----QLTVRKFY 785

Query: 1002 RPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCE 1061
            RP+D+   KAY +D+ EVY+ E T  I + A+ GKC V K+ +    +       +FFC 
Sbjct: 786  RPEDVDLGKAYKADVHEVYFCERTTTISLAAVRGKCTVVKRQEFTVASETKALMDLFFCS 845

Query: 1062 HLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHL 1121
             ++DP KG++KQLPA++KL     +  S  AS + KGK +E + +    K+  A+ E  L
Sbjct: 846  CVYDPLKGTVKQLPANVKLGKPPAA--SSLASAKGKGKLVEDDRQ---PKETSANDEK-L 899

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + LDIFAGCGGLSEG+ QSGI+STKWAIEY+  A EAFK+NHP + +  +NCNV+LR++M
Sbjct: 900  SMLDIFAGCGGLSEGIHQSGIASTKWAIEYDHAAAEAFKMNHPTATVFFDNCNVVLRSIM 959

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
            E  GD +DC ST EAAE+A+ L EN  ++LP PG+VDFI+GGPPCQGFSGMNRFN+  WS
Sbjct: 960  EIGGDLDDCCSTPEAAEMASKLSENQKSSLPRPGEVDFISGGPPCQGFSGMNRFNKRNWS 1019

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
            K+QCEM+L FLS+ADYF+PRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL+A
Sbjct: 1020 KIQCEMVLGFLSYADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILQA 1079

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
            G +G+SQSR RA IWAA+P + LP+WPEP+HVFA+ +LKI LS N  Y+A   T  GAP 
Sbjct: 1080 GHYGISQSRTRAIIWAAAPDEVLPDWPEPVHVFASAQLKIPLSGNSVYAAADDTRGGAPL 1139

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
            R++TVRDTIGDLP V NG  K    Y N+P SWFQK IRG   VL DHI KEMNELN IR
Sbjct: 1140 RSITVRDTIGDLPPVANGTEKPETPYGNEPQSWFQKNIRGGATVLRDHICKEMNELNFIR 1199

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
            CQ+IPKRPGADW DLPDEKVKLSTGQ VDLIPWCLPNTA+RHNQWKGLFGRLDW+GNFPT
Sbjct: 1200 CQRIPKRPGADWRDLPDEKVKLSTGQTVDLIPWCLPNTAERHNQWKGLFGRLDWDGNFPT 1259

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            SITDPQPMGKVGMCFHP+QDRI+TVRECARSQGFPDSY+F G++Q+KHRQIGNAVPP LA
Sbjct: 1260 SITDPQPMGKVGMCFHPEQDRIVTVRECARSQGFPDSYKFFGTMQNKHRQIGNAVPPPLA 1319

Query: 1542 FALGRKLKEAVESKRS 1557
             ALG KLKEA++   S
Sbjct: 1320 KALGVKLKEAIQQASS 1335


>gi|359486204|ref|XP_002268238.2| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis
            vinifera]
          Length = 1238

 Score = 1231 bits (3186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1184 (53%), Positives = 807/1184 (68%), Gaps = 91/1184 (7%)

Query: 420  PRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTS 479
            P R L ++  Y+SD R   +E+L +         ++ +G ++        LD    +   
Sbjct: 98   PNRRLTNFVFYDSDERPQPVEMLEI-------CNMYIAGTILP-------LDESPDE--- 140

Query: 480  GVSGAQDAGGFPIYLSSIKEWMI---EFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPV 536
                 ++ G    +   ++ W I   E GS +I++S  T++A Y   +P   Y   Y+  
Sbjct: 141  ----EKEKGIRCEHFGRLESWAISGFEEGSPVIWVS--TEIADYECIEPRNGYKRIYKNF 194

Query: 537  LKTARVAISIITMLKEQTRVS-RLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQ 595
             + AR  I +   L +    +  +S  +++  +         ++S    ++E +V+  G+
Sbjct: 195  YEKARACIEVYKKLSKSCGGNPNMSLDELVAGVVSSMAQGRKFLSG--LSIESFVISQGE 252

Query: 596  IVL-QLFAEYPDEQIKKCAFIIG----LMKKMEERHHTKWLVKKKKVQKSEINLNPRASM 650
             +  QL     DE  K+   +      L    +++  +K  +  K +    +   P+ S+
Sbjct: 253  FIHDQLIGL--DETCKQNDHVFSELPVLAALRDKKGKSKGSLPGKAIASGRV---PKRSL 307

Query: 651  G-----PVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEV---EEQ 702
                      +KRKVM ATTT+LINR WGEYYSNY PE  +     + NEDEE    +E+
Sbjct: 308  RISDEEKKNETKRKVMSATTTKLINRTWGEYYSNYLPEKSEGGRGFQVNEDEETGNEDEE 367

Query: 703  GENEEDDTEEEKLISEERQISC-------------------------SVAVQIKSRSTKK 737
              NE+++T  E                                    S     K  S+ +
Sbjct: 368  TGNEDEETGNEDEEMGNENEEEEENMEVDSEVEEEETLLLEKIKKPHSALKPTKFCSSNE 427

Query: 738  EITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGG 795
            EITW+G+   K+  G  LYK+AIV G+VV++GS+VLVE+D+ D +  IYFVEYMFE   G
Sbjct: 428  EITWDGQLEDKTCAGETLYKRAIVRGDVVAVGSSVLVEMDDSDGVSPIYFVEYMFENLDG 487

Query: 796  CKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKD 855
             K+ HG +M RG  TVLG++ANEREVFL N C   +L D+KQTV+++IR +PWG+QHRK 
Sbjct: 488  RKMVHGRLMLRGFQTVLGSSANEREVFLTNDCMVFDLGDVKQTVIMEIRLIPWGYQHRKA 547

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKES 915
             AN DK+DRARAEER+ KGLP EYYC+SLYWPERGAFF LP  +MGLG G C +C  KE+
Sbjct: 548  NANNDKIDRARAEERRSKGLPLEYYCRSLYWPERGAFFRLPTSTMGLGSGVCQSCKIKET 607

Query: 916  EKEKETFKVH-SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVC 974
            +KEKETFKV+ SKT+F     EY V D+VY+ PH+F  D    +T K+ +N G KP+VVC
Sbjct: 608  QKEKETFKVNKSKTTFTLKGTEYSVKDFVYLHPHYFAADGKAMDTSKSRKNAGPKPFVVC 667

Query: 975  QLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIA 1034
             LL+I + K  K A+ +ST++KVRRFFRP+DISAEKA+ SDIREVYYS +  ++ V AI 
Sbjct: 668  HLLQIKLSKSFKLADPESTKLKVRRFFRPEDISAEKAHLSDIREVYYSTQIVVVPVMAIE 727

Query: 1035 GKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASR 1094
            GKCEVRKK+++PA NAPA FQHIFFC+  +DP   ++K+LPA +KL  S      EAA R
Sbjct: 728  GKCEVRKKHELPAFNAPAEFQHIFFCQSQYDPDTRAIKKLPARLKLSSSENMDTDEAACR 787

Query: 1095 RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
            ++  +C           +GG   ++ LATLD+FAGCGGLSEGLQQ+G+S TKWAIEYEEP
Sbjct: 788  KRTSEC-----------KGGECDKSRLATLDVFAGCGGLSEGLQQAGVSLTKWAIEYEEP 836

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            AGEAF LNHP++LM IN+CNVILRA+M  CGDA+DCVSTSEA ELA  LDE  I NLP P
Sbjct: 837  AGEAFHLNHPDALMFINDCNVILRAIMSACGDADDCVSTSEATELAEKLDEKDIRNLPRP 896

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            GQVDFINGGPPCQGFSGMNRFNQ  WSK+QCEMILAFLSFADYF+PR+FLLENVRNFV+F
Sbjct: 897  GQVDFINGGPPCQGFSGMNRFNQGKWSKMQCEMILAFLSFADYFRPRFFLLENVRNFVTF 956

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
            NKGQTFRLTLASLLEMGYQVRFG+LEAGA+GV QSR+RAFIWAASP +TLPEWPEPMHVF
Sbjct: 957  NKGQTFRLTLASLLEMGYQVRFGVLEAGAYGVPQSRRRAFIWAASPEETLPEWPEPMHVF 1016

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
              PELKI       Y+AVRSTA G PFRA+TVRD IGDLP +GNGA +T MEY  +  SW
Sbjct: 1017 PGPELKI-----NNYAAVRSTATGGPFRAITVRDAIGDLPNIGNGACETTMEYPREASSW 1071

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
            +Q++ RG+M++LTDHISK+MNELNLIRC+KIPKRPGADWH + + KV+LS+G++  L+P 
Sbjct: 1072 YQRKFRGDMSILTDHISKKMNELNLIRCKKIPKRPGADWHAIKNGKVRLSSGRIAKLLPS 1131

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
             L N  KRHNQWKG+ GRLDWEG+FPTSIT+PQP+GKVGMCFHPDQDRIL+VRECAR+QG
Sbjct: 1132 WLTNKGKRHNQWKGVLGRLDWEGHFPTSITNPQPLGKVGMCFHPDQDRILSVRECARTQG 1191

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            FPDSY+F G + HKHRQ+GNAVPP LAFALGRKLKEAVE K ST
Sbjct: 1192 FPDSYKFSGQMHHKHRQVGNAVPPPLAFALGRKLKEAVERKHST 1235



 Score =  293 bits (751), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 156/298 (52%), Positives = 208/298 (69%), Gaps = 8/298 (2%)

Query: 24  KNKKRKPKSEVPETKDSTSG----QKEKMKKLSQDSEEP----RKRPKRMAACTDFKEKS 75
           K KK +    V E+ D+ S      K + K+ S DS       RK+PK+ +  TD K KS
Sbjct: 3   KAKKGETMLAVFESDDAESSVGATTKPRQKRCSSDSSGSACGSRKKPKKASRHTDCKNKS 62

Query: 76  VRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEI 135
           V +  KS +   KK     DE VAV  T  ++  RPNRRL +F+ +D +  PQP+EMLEI
Sbjct: 63  VCLLRKSSVNGTKKQPIEKDEQVAVMSTTGENIPRPNRRLTNFVFYDSDERPQPVEMLEI 122

Query: 136 DDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLK 195
            +++I+G ILPL ES D EKEKG+RCE FGR+ESW+ISG+E+GSPVIW+ST+IADY+C++
Sbjct: 123 CNMYIAGTILPLDESPDEEKEKGIRCEHFGRLESWAISGFEEGSPVIWVSTEIADYECIE 182

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P + YK+ Y+ F+EKARACIEVYKKLSK+ GGN + S+DEL+AGVV SM+  + F  G+S
Sbjct: 183 PRNGYKRIYKNFYEKARACIEVYKKLSKSCGGNPNMSLDELVAGVVSSMAQGRKFLSGLS 242

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLG 313
           I+ FVISQGEFI +QLIGLDET K+ND  F+ELPVL AL+++  K +  +   A + G
Sbjct: 243 IESFVISQGEFIHDQLIGLDETCKQNDHVFSELPVLAALRDKKGKSKGSLPGKAIASG 300


>gi|449515510|ref|XP_004164792.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Cucumis
            sativus]
          Length = 1033

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1018 (58%), Positives = 751/1018 (73%), Gaps = 34/1018 (3%)

Query: 12   SNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDF 71
            SND + +D+  +K  K K K    E  +   G               RK PKR A+C+DF
Sbjct: 13   SNDLEKSDTKNVKAVKPKQKRNRLENGEQVVGV--------------RKMPKRAASCSDF 58

Query: 72   KEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR-QDGDRPNRRLNDFILHDENGLPQPL 130
            K K++++ EKS ++E K++   +DEI AVGLT   QD  RPNRRL +F  HDE+G PQ +
Sbjct: 59   KVKTIQLPEKSSVIECKREVTVEDEIAAVGLTTLGQDDSRPNRRLTEFTFHDEDGKPQAV 118

Query: 131  EMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIAD 190
            EMLE++DLFISG+ILP ++ SD+EK KGVRCEGFGRIESW+ISGYEDGSP IW+STD+AD
Sbjct: 119  EMLEVNDLFISGVILPFEDISDKEKNKGVRCEGFGRIESWTISGYEDGSPTIWISTDVAD 178

Query: 191  YDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCF 250
            YDC++PA+ YKK Y +F+EKA AC+EVYKKL+++SGG  D +++ELL GVVRS++ S+ F
Sbjct: 179  YDCVRPAAGYKKLYNIFYEKANACVEVYKKLARSSGGYPDLTLEELLGGVVRSLNSSRNF 238

Query: 251  RGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAA 310
              G+S+KDF+I QGEFI+NQLIGLD+TSKKNDQ F +LPVL AL++ES K+ N +  NA 
Sbjct: 239  PAGMSVKDFIILQGEFIYNQLIGLDDTSKKNDQVFTDLPVLCALRDESRKQGNLLP-NAG 297

Query: 311  SLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTS 370
               G   +G K+ DG+ +++         +EDED KLA+LLQEEE W+S KQ+KTQ ST+
Sbjct: 298  IFDGFTNLGLKIKDGE-QLNPPNILGSGDEEDEDLKLAKLLQEEEYWRSAKQRKTQRSTT 356

Query: 371  GMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLY 430
              NKFYIKINEDEIANDYP P FY+ +++E DE + +D D D CD D LPR MLH+WSLY
Sbjct: 357  SSNKFYIKINEDEIANDYPLPAFYKTTKDEMDEYVIFDGDMDVCDPDDLPRSMLHNWSLY 416

Query: 431  NSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGF 490
            NSDSRLISLELLPMKPC+DIDVTI+GSG M +D+GSGFCLD D+SQ  S  S  Q+  G 
Sbjct: 417  NSDSRLISLELLPMKPCDDIDVTIYGSGIMTADDGSGFCLDADTSQSCS--SQMQNTDGI 474

Query: 491  PIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITML 550
            PIYLS+IKEWMIEFGSSM+FISIRTD+AWYRLGKPSKQYAPWY+ VLKTAR+AI II +L
Sbjct: 475  PIYLSAIKEWMIEFGSSMVFISIRTDMAWYRLGKPSKQYAPWYQTVLKTARLAICIIMLL 534

Query: 551  KEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIK 610
            KEQ+R S+LSF  +IK++SE  K+  +YISS P+ VERYVVVHGQI+LQ F+EYPD+ I+
Sbjct: 535  KEQSRASKLSFAVIIKKISEFDKNNPAYISSIPSVVERYVVVHGQIILQTFSEYPDDMIR 594

Query: 611  KCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLIN 670
            KCAFI GL  KMEERHHTKWLV+KK V K E N+NPRASM PV  + RK M ATTTRLIN
Sbjct: 595  KCAFITGLSDKMEERHHTKWLVRKKAVLKQEANMNPRASMKPV--TSRKAMPATTTRLIN 652

Query: 671  RIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQI------SC 724
            RIWGE+YSNYSPED K   A + NE +E E + E E +D E E++  E+ Q+      S 
Sbjct: 653  RIWGEFYSNYSPEDLK---AADNNETKEDEPEEEEEVEDEESEEVEEEDGQVDLKTKESK 709

Query: 725  SVAVQIKSRSTKKEITWEGECVRKS--GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPV 782
             V    K++ ++    W+G+ V K+  G  LYK+AIVHG++V++G  V VE D +  LP 
Sbjct: 710  PVVKPAKAKLSEGNNKWDGKMVGKTSEGYPLYKQAIVHGDLVAVGGFVSVETDNVHDLPA 769

Query: 783  IYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVD 842
            IY VEYM+E + G K+ HG ++ RG  TVLGN A EREVFL N C + EL +I++ VVV+
Sbjct: 770  IYLVEYMYEKSNGRKMVHGRLLVRGLETVLGNAAKEREVFLTNDCLEFELNEIREAVVVE 829

Query: 843  IRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL 902
                PWG+QHRK  A  DK +  RAEERK +GLP E+YCKSLYWPE+GAFF LP ++MGL
Sbjct: 830  SCMRPWGYQHRKANAKKDKAEEERAEERKHRGLPMEFYCKSLYWPEKGAFFCLPKETMGL 889

Query: 903  GVGSCHACGTKESEKEKETFKVHSK-TSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFK 961
            G G CH+C  KE+++E +T K+HS  TSF Y   +Y V+D VY++PHHF  D+   ETFK
Sbjct: 890  GTGDCHSCKLKETQRE-DTMKLHSSLTSFTYRGTDYSVNDCVYLAPHHFGTDERGIETFK 948

Query: 962  AGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREV 1019
             GRNV L  YVVCQLL I  PK  K+    ST V+VRRFFRP+DIS EKAYCSDIREV
Sbjct: 949  GGRNVVLNAYVVCQLLGIESPKGSKQPCPVSTMVQVRRFFRPEDISVEKAYCSDIREV 1006


>gi|10257413|gb|AAG15406.1| cytosine-5 DNA methyltransferase MET1 [Zea mays]
          Length = 784

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/775 (68%), Positives = 633/775 (81%), Gaps = 6/775 (0%)

Query: 782  VIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVV 841
            VI FVEYMF+   G K+ HG I+Q+GS T+LGN ANEREVFL N C + +L DIK+ V+V
Sbjct: 7    VICFVEYMFQKVDGSKMVHGRILQKGSQTILGNAANEREVFLTNDCLEFKLDDIKELVMV 66

Query: 842  DIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMG 901
            DI+S PWGH++RK+ + ADKV++ +AEERKKKG P  Y+CKSLYWPE+GAFF L  D MG
Sbjct: 67   DIQSRPWGHKYRKENSEADKVEQVKAEERKKKGQPMVYFCKSLYWPEKGAFFALSRDKMG 126

Query: 902  LGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFK 961
            LG G C +C   E + ++   K+ SKTSFVY    Y V++++YI P  F  D+ +  TFK
Sbjct: 127  LGSGLCSSCDNIEPDSDE--LKIFSKTSFVYRKVTYNVNEFLYIRPDFFAEDE-DRATFK 183

Query: 962  AGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYY 1021
            AGRNVGLKPY VCQ+L I      K+    S  +  RRF+RPDDIS+ KAY SDIREVYY
Sbjct: 184  AGRNVGLKPYAVCQILSIPEGAGSKKLNPASANISARRFYRPDDISSAKAYASDIREVYY 243

Query: 1022 SEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLR 1081
            SE+   + V+ I GKCEVRKKND+ + + P +F+H+FFCE ++D + G+LKQLP +++  
Sbjct: 244  SEDVIDVPVDMIEGKCEVRKKNDLASSDLPVMFEHVFFCELIYDRASGALKQLPPNVRFM 303

Query: 1082 YSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSG 1141
                 +   +A ++ KGK I   D+++  K     +EN LATLDIFAGCGGLSEGLQQ+G
Sbjct: 304  ---SMVQRTSALKKNKGKQICEPDQIDSGKWLDVPKENRLATLDIFAGCGGLSEGLQQAG 360

Query: 1142 ISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAA 1201
            +S TKWAIEYEEPAGEAF  NHPE+++ ++NCNVIL+A+M+KCGD +DCVSTSEAAE AA
Sbjct: 361  VSFTKWAIEYEEPAGEAFNKNHPEAVVFVDNCNVILKAIMDKCGDTDDCVSTSEAAEQAA 420

Query: 1202 SLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPR 1261
             L E  INNLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR
Sbjct: 421  KLPEVNINNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPR 480

Query: 1262 YFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPH 1321
            +FLLENVRNFVSFNKGQTFRL +ASLLEMGYQVRFGILEAGAFGV+QSRKRAFIWAA+P 
Sbjct: 481  FFLLENVRNFVSFNKGQTFRLAVASLLEMGYQVRFGILEAGAFGVAQSRKRAFIWAAAPG 540

Query: 1322 DTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
            + LP+WPEPMHVFA+PELKI L D   Y+A RSTA GAPFRA+TVRDTIGDLP VGNGAS
Sbjct: 541  EMLPDWPEPMHVFASPELKITLPDGQYYAAARSTAGGAPFRAITVRDTIGDLPKVGNGAS 600

Query: 1382 KTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKV 1441
            K  +EY  +PVSWFQK+IRG+M VL DHISKEMNELNLIRCQ IPKRPG DWHDLPDEKV
Sbjct: 601  KLTLEYGGEPVSWFQKKIRGSMMVLNDHISKEMNELNLIRCQHIPKRPGCDWHDLPDEKV 660

Query: 1442 KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQD 1501
            KLS GQ+ DLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQD
Sbjct: 661  KLSNGQMADLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQD 720

Query: 1502 RILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            RI+TVRECARSQGFPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLKEAV+ ++
Sbjct: 721  RIITVRECARSQGFPDSYEFAGNIQNKHRQIGNAVPPPLAYALGRKLKEAVDKRQ 775


>gi|414883784|tpg|DAA59798.1| TPA: hypothetical protein ZEAMMB73_504910 [Zea mays]
          Length = 1115

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/1141 (49%), Positives = 755/1141 (66%), Gaps = 76/1141 (6%)

Query: 35   PETKDSTSGQKEKMKKLSQDSEE-------------PRKRPKRMAACTDFKEKSVRISEK 81
            P+ K+  S +  K++  S D+ E              RKRP+R AAC+DFKEKS+R+SEK
Sbjct: 16   PQKKEEESTENNKLENGSLDATEEVHHGVEKGDGHVTRKRPRRSAACSDFKEKSIRLSEK 75

Query: 82   SYLVEAKKDQYADDEIVAVGLTARQDGDRPN-RRLNDFILHDENGLPQPLEMLEIDDLFI 140
              +V  KK++  ++E+ AV LT     D P  R+L DFILHD  G PQP EM EIDD FI
Sbjct: 76   KSVVMVKKNRMEEEEVDAVNLTKLGPEDPPPCRKLIDFILHDAEGNPQPFEMSEIDDFFI 135

Query: 141  SGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSY 200
            + LI+P+ +  ++E+E+GVRCEGFGRIE W+ISGY++G+PVIW+STD+ADY+C+KP+++Y
Sbjct: 136  TALIMPMDDDLEKERERGVRCEGFGRIEDWNISGYDEGTPVIWVSTDVADYECVKPSTNY 195

Query: 201  KKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFV 260
            K Y++ F+EKA+ C+EV+KKL+K+ GGN +  +DELLA VVRS +  K + G +S KD V
Sbjct: 196  KSYFDHFYEKAQVCVEVFKKLAKSVGGNPNQGLDELLASVVRSTNAMKGYSGTMS-KDLV 254

Query: 261  ISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAIGS 320
            IS GEF++NQL+GLDETS  +D+KFA LPVL++L+++   R     V    L  N +  S
Sbjct: 255  ISIGEFVYNQLVGLDETSNNDDEKFATLPVLLSLRDQCRSR-----VELTKLPSNFSNTS 309

Query: 321  -KVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMNKFYIKI 379
             K+ D +                  AKLARLLQ+EE W+  K+++ +  T      YIKI
Sbjct: 310  LKIKDSECDETAEDDDD--------AKLARLLQQEEEWKMMKKQRGRRGTPSQKNVYIKI 361

Query: 380  NEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISL 439
            +E EIANDYP P +Y+P  +E DE +    D      D +P R+L++W+LYN+DSRLISL
Sbjct: 362  SEAEIANDYPLPAYYKPFSQEMDEYIFDSDDSIF--SDDVPVRILNNWTLYNADSRLISL 419

Query: 440  ELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKE 499
            EL+PMK   + DV IFGSG M  D+GS           +S     Q   G PIYLS IKE
Sbjct: 420  ELIPMKSGAENDVVIFGSGFMRDDDGSCCSTAESVKSSSSSSKADQLDAGIPIYLSPIKE 479

Query: 500  WMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRL 559
            W+IEFG SMI I+IRTD+AWY+L +P+KQYAPW EPVLKTAR+A+SIIT+LKEQ+R S+L
Sbjct: 480  WIIEFGGSMICITIRTDVAWYKLRQPTKQYAPWCEPVLKTARLAVSIITLLKEQSRASKL 539

Query: 560  SFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLM 619
            SF DVI++++E  K   ++ISS+   VERY+VVHGQI+LQ FA++PDE I++ AF+ GL+
Sbjct: 540  SFADVIRKVAEFDKGNPAFISSNITLVERYIVVHGQIILQQFADFPDETIRRSAFVSGLL 599

Query: 620  KKMEERHHTKWLVKKK-KVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
             KME+R HTK ++KKK +V + E NLNP A+MGP   S++K M+ATTTRLINRIW +YY+
Sbjct: 600  LKMEQRRHTKLVMKKKTQVMRGE-NLNPSAAMGP--ASRKKAMRATTTRLINRIWSDYYA 656

Query: 679  NYSPEDGKEETACEANEDE---------------EVEEQGENEEDDTEEEKLISEERQIS 723
            ++ PED KE    E  E +               ++EE        T   KL+S+     
Sbjct: 657  HHFPEDSKEGDGNETKEIDDEQEENEDEDAEDEGQIEENISKTPPSTRSRKLLSQ----- 711

Query: 724  CSVAVQIKSRSTKKEITWEGECVRK--SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLP 781
                       T KEI WEGE   K  SG  LYK A V    + +G  V +E D  D   
Sbjct: 712  -----------TCKEIRWEGETSGKTLSGETLYKCAYVRELRIPVGGTVALEDDSGDT-- 758

Query: 782  VIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVV 841
            VI FVEYMF+   G K+ HG I+Q+GS T+LGN ANEREVFL N C + +L DIK+ V+V
Sbjct: 759  VICFVEYMFQKVDGSKMVHGRILQKGSQTILGNAANEREVFLTNDCLEFKLDDIKELVMV 818

Query: 842  DIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMG 901
            DI+S PWGH++RK+ + ADKV++ +AEERKKKG P  Y+CKSLYWPE+GAFF L  D MG
Sbjct: 819  DIQSRPWGHKYRKENSEADKVEQVKAEERKKKGQPMVYFCKSLYWPEKGAFFALSRDKMG 878

Query: 902  LGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFK 961
            LG G C +C   E + ++   K+ SKTSFVY    Y V++++YI P  F  D+    TFK
Sbjct: 879  LGSGLCSSCDNIEPDSDE--LKIFSKTSFVYRKVTYNVNEFLYIRPDFFAEDEDRA-TFK 935

Query: 962  AGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYY 1021
            AGRNVGLKPY VCQ+L I      K+    S  +  RRF+RPDDIS+ KAY SDIREVYY
Sbjct: 936  AGRNVGLKPYAVCQILSIPEGAGSKKLNPASANISARRFYRPDDISSAKAYASDIREVYY 995

Query: 1022 SEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLR 1081
            SE+   + V+ I GKCEVRKKND+ + + P +F+H+FFCE ++D + G+LKQLP +++  
Sbjct: 996  SEDVIDVPVDMIEGKCEVRKKNDLASSDLPVMFEHVFFCELIYDRASGALKQLPPNVRFM 1055

Query: 1082 YSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSG 1141
                 +   +A ++ KGK I   D+++  K     +EN LATLDIFAGCGGLSEGLQQ+G
Sbjct: 1056 ---SMVQRTSALKKNKGKQICEPDQIDSGKWLDVPKENRLATLDIFAGCGGLSEGLQQAG 1112

Query: 1142 I 1142
            +
Sbjct: 1113 M 1113


>gi|414883788|tpg|DAA59802.1| TPA: hypothetical protein ZEAMMB73_755353 [Zea mays]
          Length = 1115

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1109 (50%), Positives = 743/1109 (66%), Gaps = 63/1109 (5%)

Query: 54   DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPN- 112
            D    RKRP+R AAC+DFKEKS+R+SEK  +V  KK++  ++E+ AV LT     D P  
Sbjct: 48   DGHVTRKRPRRAAACSDFKEKSIRLSEKKSVVMVKKNRMEEEEVDAVNLTKLGPEDPPPC 107

Query: 113  RRLNDFILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSI 172
            R+L DFILHD  G PQP EM EIDD FI+ LI+P+ +  ++E+EKGVRCEGFGRIE W+I
Sbjct: 108  RKLIDFILHDAEGNPQPFEMSEIDDFFITALIMPMDDDLEKEREKGVRCEGFGRIEDWNI 167

Query: 173  SGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCS 232
            SGY++G+PVIW+STD+ADY+C+KP+++YK Y++ F+EKA+ C+EV+KKL+K+ GGN +  
Sbjct: 168  SGYDEGTPVIWVSTDVADYECVKPSTNYKSYFDHFYEKAQVCVEVFKKLAKSVGGNPNQG 227

Query: 233  IDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLV 292
            +DELLA VVRS +  K + G +S KD VIS GEF++NQL+GLDETS  +D+KFA LPVL+
Sbjct: 228  LDELLASVVRSTNAMKGYSGTMS-KDLVISIGEFVYNQLVGLDETSNNDDEKFATLPVLL 286

Query: 293  ALKEESSKRENFVQVNAASLGGNLAIGS-KVGDGDGKMDQYGSSTCPADEDEDAKLARLL 351
            +L+++   R     V    L  N +  S K+ D +                  AKLARLL
Sbjct: 287  SLRDQCRSR-----VELTKLPSNFSNTSLKIKDSECDETAEDDDD--------AKLARLL 333

Query: 352  QEEELWQSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDY 411
            Q+EE W+  K+++ +  T      YIKI+E EIANDYP P +Y+P  +E DE +    D 
Sbjct: 334  QQEEEWKMMKKQRGRRGTPSQKNVYIKISEAEIANDYPLPAYYKPFSQEMDEYIFDSDDS 393

Query: 412  DSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLD 471
                 D +P R+L++W+LYN+DSRLISLEL+PMK   + DV +FGSG M  D+GS     
Sbjct: 394  IF--SDDVPVRILNNWTLYNADSRLISLELIPMKSGAENDVVVFGSGFMRDDDGSCCSTA 451

Query: 472  TDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAP 531
                  +S     Q   G PIYLS IKEW+IEFG SMI I+IRTD+AWY+L +P+KQYAP
Sbjct: 452  ESVKSSSSSSKADQLDAGIPIYLSPIKEWIIEFGGSMICITIRTDVAWYKLRQPTKQYAP 511

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            W EPVLKTAR+A+SIIT+LKEQ+R S+LSF DVI++++E  K   ++ISS+   VERY+V
Sbjct: 512  WCEPVLKTARLAVSIITLLKEQSRASKLSFADVIRKVAEFDKGNPAFISSNITLVERYIV 571

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKK-KVQKSEINLNPRASM 650
            VHGQI+LQ FA++PDE I++ AF+ GL+ KME+R HTK ++KKK +V + E NLNP A+M
Sbjct: 572  VHGQIILQQFADFPDETIRRSAFVSGLLLKMEQRRHTKLVMKKKTQVMRGE-NLNPSAAM 630

Query: 651  GPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDE------------- 697
            GP   S++K M+ATTTRLINRIW +YY+++ PED KE    E  E +             
Sbjct: 631  GP--ASRKKAMRATTTRLINRIWSDYYAHHFPEDSKEGDGNEIKEIDDEQEENEDEDAED 688

Query: 698  --EVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK--SGLAL 753
              ++EE        T   KL+S+                T KEI WEGE   K  SG  L
Sbjct: 689  EGQIEENISKTPPSTRSRKLLSQ----------------TCKEIRWEGETSGKTLSGETL 732

Query: 754  YKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLG 813
            YK A V    + +G  V +E D  D   V+ FVEYMF+   G K+ HG I+Q+GS T+L 
Sbjct: 733  YKCAYVRELRIPVGGTVALEDDSGDT--VMCFVEYMFQKVDGSKMVHGRILQKGSQTILD 790

Query: 814  NTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKK 873
            N ANEREVFL N C + +L DIK+ V+VDI+S PWGH++RK+ + ADKV++ +AEERKKK
Sbjct: 791  NAANEREVFLTNDCLEFKLDDIKELVMVDIQSRPWGHKYRKENSEADKVEQVKAEERKKK 850

Query: 874  GLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYG 933
            G P  Y+CKSLYWPE+GAFF L  D MGLG G C +C   E + ++   K+ SKTSFVY 
Sbjct: 851  GQPMVYFCKSLYWPEKGAFFALSRDKMGLGSGLCSSCDNIEPDSDE--LKIFSKTSFVYR 908

Query: 934  TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKST 993
               Y V++++YISP  F  D+    TFKAGRNVGLKPY VCQ+L I      K+    S 
Sbjct: 909  KVTYNVNEFLYISPDFFAEDEDRA-TFKAGRNVGLKPYAVCQILSIPEGAGSKKLNPASA 967

Query: 994  QVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI 1053
             +  RRF+RPDDIS+ KAY SDIREVYYSE+   + V+ I GKCEVRKKND+ + + P +
Sbjct: 968  NISARRFYRPDDISSAKAYASDIREVYYSEDVIDVPVDMIEGKCEVRKKNDLASSDLPVM 1027

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
            F+H+FFCE ++D + G+LKQLP +++       +   +A ++ KGK I   D+++  K  
Sbjct: 1028 FEHVFFCELIYDRASGALKQLPPNVRFM---SMVQRTSALKKNKGKQICEPDQIDSGKWL 1084

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGI 1142
               +EN LATLDIFAGCGGLSEGLQQ+G+
Sbjct: 1085 DVPKENRLATLDIFAGCGGLSEGLQQAGM 1113


>gi|110740122|dbj|BAF01962.1| DNA (cytosine-5)-methyltransferase [Arabidopsis thaliana]
          Length = 603

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 501/599 (83%), Gaps = 3/599 (0%)

Query: 959  TFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIRE 1018
            +FK+GRN+GL+ YVVCQLLEI VPKE ++A++ S  VKVRRF+RP+D+SAEKAY SDI+E
Sbjct: 3    SFKSGRNIGLRAYVVCQLLEI-VPKESRKADLGSFDVKVRRFYRPEDVSAEKAYASDIQE 61

Query: 1019 VYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI 1078
            +Y+S++T ++   A+ GKCEVRKK+D+P      I  HIFFC+   D SKGSLKQLPA++
Sbjct: 62   LYFSQDTVVLPPGALEGKCEVRKKSDMPLSREYPISDHIFFCDLFFDTSKGSLKQLPANM 121

Query: 1079 KLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQ 1138
            K ++S+  +  +   R+KKGK +E E E E+ K     +E  LATLDIFAGCGGLS GL+
Sbjct: 122  KPKFST--IKDDTLLRKKKGKGVESEIESEIVKPVEPPKEIRLATLDIFAGCGGLSHGLK 179

Query: 1139 QSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198
            ++G+S  KWAIEYEEPAG+AFK NHPES + ++NCNVILRA+MEK GD +DCVST+EA E
Sbjct: 180  KAGVSDAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAIMEKGGDQDDCVSTTEANE 239

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
            LAA L E   + LPLPGQVDFINGGPPCQGFSGMNRFNQS+WSKVQCEMILAFLSFADYF
Sbjct: 240  LAAKLTEEQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYF 299

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
            +PRYFLLENVR FVSFNKGQTF+LTLASLLEMGYQVRFGILEAGA+GVSQSRKRAFIWAA
Sbjct: 300  RPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAA 359

Query: 1319 SPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN 1378
            +P + LPEWPEPMHVF  P+LKI LS    Y+AVRSTA GAPFR +TVRDTIGDLP+V N
Sbjct: 360  APEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVEN 419

Query: 1379 GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
            G S+T  EY+   VSWFQK IRGN   LTDHI K MNELNLIRC+ IP RPGADWHDLP 
Sbjct: 420  GDSRTNKEYKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTRPGADWHDLPK 479

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
             KV LS G+V ++IP+CLPNTA+RHN WKGL+GRLDW+GNFPTS+TDPQPMGKVGMCFHP
Sbjct: 480  RKVTLSDGRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHP 539

Query: 1499 DQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            +Q RILTVRECARSQGFPDSY+F G+I HKHRQIGNAVPP LAFALGRKLKEA+  K+S
Sbjct: 540  EQHRILTVRECARSQGFPDSYEFAGNINHKHRQIGNAVPPPLAFALGRKLKEALHLKKS 598


>gi|449494652|ref|XP_004159609.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis
            sativus]
          Length = 544

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/539 (78%), Positives = 469/539 (87%), Gaps = 15/539 (2%)

Query: 1019 VYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI 1078
            +YYS+ET +  V AI GKCEVRKK DIP  N PAIF HIFFCEHL+DP KG++K+LPA +
Sbjct: 16   LYYSDETTMKPVSAIEGKCEVRKKQDIPVANCPAIFDHIFFCEHLYDPEKGAIKKLPASV 75

Query: 1079 KLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQ 1138
            KL   S    S+AA R+KK       + L +E        N LATLDIFAGCGGLSEGLQ
Sbjct: 76   KLSSPSERQISDAAQRKKK-------ENLPLE--------NRLATLDIFAGCGGLSEGLQ 120

Query: 1139 QSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198
            Q+G+S TKWAIEYEEPAGEAF LNHPE+L  +NNCNVILRAVM+ CGDA+DC+STSEA E
Sbjct: 121  QAGVSVTKWAIEYEEPAGEAFSLNHPEALTFVNNCNVILRAVMKACGDADDCISTSEAIE 180

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
            LA  LD+  INNLP PGQV+FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFA+YF
Sbjct: 181  LAEKLDDKEINNLPRPGQVEFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFAEYF 240

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
            +P+YFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV+FGILEAGA+G+SQSRKRAFIWAA
Sbjct: 241  RPKYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVKFGILEAGAYGISQSRKRAFIWAA 300

Query: 1319 SPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN 1378
            SP + LPEWPEPMHVF +PELKI LSDN +Y+AV STA GAPFR +TVRDTIGDLPAVGN
Sbjct: 301  SPEEILPEWPEPMHVFGSPELKISLSDNTRYAAVPSTAGGAPFRPITVRDTIGDLPAVGN 360

Query: 1379 GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
            GAS   MEY+++P SWFQK+IRG++ VL DHISKEMNELNLIRCQ+IPKRPGADW DLPD
Sbjct: 361  GASVITMEYKSEPASWFQKKIRGDVLVLNDHISKEMNELNLIRCQRIPKRPGADWRDLPD 420

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
            EKV+LS GQ+ DLIPWCLPNTAKRHNQWKGLFGRL+WEGNFPTSITDPQPMGKVGMCFHP
Sbjct: 421  EKVRLSNGQMHDLIPWCLPNTAKRHNQWKGLFGRLEWEGNFPTSITDPQPMGKVGMCFHP 480

Query: 1499 DQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            +QDRILTVRECARSQGFPDSY+F G+IQHKHRQIGNAVPP LA+ALGRKL+EA+E K S
Sbjct: 481  EQDRILTVRECARSQGFPDSYKFAGNIQHKHRQIGNAVPPPLAYALGRKLREAIEMKSS 539


>gi|307111085|gb|EFN59320.1| hypothetical protein CHLNCDRAFT_137705 [Chlorella variabilis]
          Length = 1369

 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1310 (40%), Positives = 734/1310 (56%), Gaps = 122/1310 (9%)

Query: 333  GSSTCPADEDEDAKLARLLQEEELWQSKKQKKTQGSTSGMN--KFYIKINEDEIANDYPF 390
            G     ADED    LAR LQ +    ++ + K  G+  G    + Y++++E EIA+DYP 
Sbjct: 84   GDKQMEADED----LARQLQAK--MDAEMRAKRPGAPKGNKGAQAYMRVSESEIADDYPA 137

Query: 391  PVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDI 450
            P  YR  +EE DEL+  D +    D + LPRR+L D+S+YN++    SLELLPM    D 
Sbjct: 138  PQAYRKEDEETDELILMDDECADVDPEYLPRRLLTDFSIYNAEGMFGSLELLPMWSGVDP 197

Query: 451  DVTIFGSGKMISDEG---SGFCLDTDSSQCTSGVS------------GAQDAGGFPIYLS 495
            DV ++ SG ++ DEG    G  L+ D +  +   +            G  +  G  +YLS
Sbjct: 198  DVELYASGLVVDDEGDFSGGQALNDDGAGGSGSGAGGSSSGAGGSGVGPAEPAGMRMYLS 257

Query: 496  SIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTR 555
             I+EW+++FG+ M+FISIRTD+AWYRL  P+ +YAPW+  VLK AR+A+ ++ +L  + R
Sbjct: 258  QIREWVVDFGADMLFISIRTDVAWYRLSVPAAKYAPWFGVVLKCARLAVKVLQLLSLEAR 317

Query: 556  VSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFI 615
             S+LSF D++KRL+   + + +++S    AVER+VV HGQI++  F  YP ++++K AF+
Sbjct: 318  ASKLSFNDIVKRLAAQDETETTFVSKKVDAVERFVVAHGQIIINQFQNYPVKEVQKSAFV 377

Query: 616  IGLMKKMEERHHTKWLV--KKKKVQKSEINLNPRASMGPVVVSK-RKVMQATTTRLINRI 672
              L ++M +  H K     KK+ V+   +N NP  S     V++  K M AT T ++  +
Sbjct: 378  STLRERMAQLRHCKLYKAGKKEVVRGQRVNRNPMGSNQLHDVARSNKPMTATATVMVKNV 437

Query: 673  WGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKS 732
            W + Y   +  +G+ E      E  +  E+ ENEE+  ++    +  +  +         
Sbjct: 438  W-QAYFRGAKPEGEGEEGGAEGEAAKEVEEDENEEEAEDDVAEDALAQGAAKKAGAAAAK 496

Query: 733  RSTKKEITWEGECVR-KSGLALYKKAIVHGEV-VSLGSAVLVEVDELDQLPVIYFVEYMF 790
            +    +  W G   R + G   Y KA V GEV V+LG AVL+  +E D+   +  V+ M+
Sbjct: 497  KKKAAKGAWVGAVARTEDGDKFYSKAKV-GEVQVALGDAVLLAAEEDDEGAPLALVQAMW 555

Query: 791  EATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGH 850
            +   G K     ++ RG  TVLG+ A++ EVFL  +    EL  I +   V      W  
Sbjct: 556  QTADGSKEVQVRLLARGEETVLGDAASDSEVFLTTELETRELTSIVEKASVSKLERVWDA 615

Query: 851  QHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHAC 910
              R++    D+  R R EE  K+G P E + +  Y P  G F   P D            
Sbjct: 616  SKRREQFQQDQELRQRNEEAAKEGRPLELFWRRQYAPHEGMFCDPPADLQ---------L 666

Query: 911  GTKESEKEKETFK----VHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNV 966
            GT+  E + +  K    +     FV    EY   D++++ P  F  D+ E +  + G +V
Sbjct: 667  GTRLPEDDGKPAKGLKVLAGGKGFVKDGVEYREGDFLFVGPTVF--DQLE-DAQQDGSHV 723

Query: 967  GLKPYVVCQLLEI------------------------------------IVPKEPKRAEV 990
            GL+ + + QL+ +                                       +    A  
Sbjct: 724  GLRAWGIAQLVRLGKVEKAEGKGKAAKGKGKKGEDDWEDSEEAGSNKGGGKGRGAAAAGD 783

Query: 991  KSTQVKVRRFFRPDDISAEKAY-CSDIREVYYSEETHLIFVEAIAGKCEVRKK---NDIP 1046
            K + + VRR++RP+DIS E+AY  +   EVY SEE   + V+ + G+C V  K     I 
Sbjct: 784  KVSALTVRRYYRPEDISREQAYKAASFYEVYASEEEVTVSVDDVVGRCRVVPKGYPTSID 843

Query: 1047 ACNAPAIFQ----------HIFFCEHLHD------PSKGSLKQLPAHIKLRYSSGSLDSE 1090
                 A F            +   E L D        + +    P   K +   G   +E
Sbjct: 844  TFECAATFTRKGKKFGPAPQLAIPEDLQDFDPMEEEEEKAAAVAPRADKGKGKVGEE-AE 902

Query: 1091 AASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIE 1150
             A+  ++GK + G                 LAT+DIFAGCGGLSEG+ Q+G + +KW IE
Sbjct: 903  PAAAAEQGKAVAGAGAFP------GDDGIALATMDIFAGCGGLSEGMHQAGAAVSKWGIE 956

Query: 1151 YEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINN 1210
            YE PA  AF++N+P++ +  NNCNV+L A M K G  +DC +  +A E  A+L    +  
Sbjct: 957  YERPAAAAFEVNNPQAAVFCNNCNVLLHAAMTKAGLEDDCDACDDAKEGTANLPSEQMAA 1016

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRN 1270
            LPLPG+VDFI GGPPCQG+SGMNRFN+  WS VQ  M++AFLS      PRYFLLENVRN
Sbjct: 1017 LPLPGEVDFICGGPPCQGYSGMNRFNKGNWSMVQNSMVMAFLS------PRYFLLENVRN 1070

Query: 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
            FVS NK  TFRLT+ SLL+MGYQVRFG+L AG FGV+QSRKR FIWAA+P + LP+WP+ 
Sbjct: 1071 FVSHNKSFTFRLTVRSLLDMGYQVRFGVLNAGNFGVAQSRKRTFIWAAAPGELLPDWPKL 1130

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
            MH F  P+L I L    QY AV  T  GAP R +TVRD I DLP + NG     MEY   
Sbjct: 1131 MHCFRTPQLTINLPGGVQYRAVPQTV-GAPLRPVTVRDAIADLPEIENGHMVEEMEYVGG 1189

Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR-PGADWHDLPDEKVKLSTG--- 1446
            PVS FQ+ +RG+   LTDHISK+MNELNL RC+ IPK  PGADW  L +E VK   G   
Sbjct: 1190 PVSAFQQHVRGDCTQLTDHISKQMNELNLERCRCIPKNCPGADWRVL-EEIVKADPGREK 1248

Query: 1447 -QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILT 1505
             +   L+PWCLPNTA RHN W+GLFGRLDW G+FPTS TDPQPMGKVG  FHP+QDRI++
Sbjct: 1249 FKGQPLVPWCLPNTADRHNGWRGLFGRLDWNGHFPTSTTDPQPMGKVGQVFHPEQDRIVS 1308

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            VRECAR+QGFPD ++F G++ +KHRQ+GNAVPP LA ALGR+L++A+E+K
Sbjct: 1309 VRECARAQGFPDKHRFVGTVHNKHRQVGNAVPPPLAAALGRQLRKALEAK 1358


>gi|115470907|ref|NP_001059052.1| Os07g0182900 [Oryza sativa Japonica Group]
 gi|113610588|dbj|BAF20966.1| Os07g0182900, partial [Oryza sativa Japonica Group]
          Length = 445

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/441 (82%), Positives = 406/441 (92%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            S+EN LATLDIFAGCGGLSEGLQQ+G+S TKWAIEYEEPAGEAF  NHPE+ + ++NCNV
Sbjct: 4    SKENRLATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNV 63

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
            IL+A+M+KCGDA+DC+STSEAAE AA   ++ I NLP+PG+V+FINGGPPCQGFSGMNRF
Sbjct: 64   ILKAIMDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRF 123

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
            NQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVR
Sbjct: 124  NQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVR 183

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            FGILEAG FGV+QSRKRAFIWAA+P +TLP+WPEPMHVFA+PELKI L D   Y+A +ST
Sbjct: 184  FGILEAGTFGVAQSRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKST 243

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
            A GAPFRA+TVRDTIGDLP V NGASK ++EY  +P+SWFQK+IRGN   L DHISKEMN
Sbjct: 244  AGGAPFRAITVRDTIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMN 303

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            ELNLIRCQ+IPKRPG DWHDLPDEKVKLS+GQ+VDLIPWCLPNTAKRHNQWKGL+GRLDW
Sbjct: 304  ELNLIRCQRIPKRPGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDW 363

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            EGNFPTS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPD+YQF G+IQ KHRQIGNA
Sbjct: 364  EGNFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNA 423

Query: 1536 VPPTLAFALGRKLKEAVESKR 1556
            VPP LAFALGRKLKEAV++KR
Sbjct: 424  VPPPLAFALGRKLKEAVDAKR 444


>gi|297739461|emb|CBI29643.3| unnamed protein product [Vitis vinifera]
          Length = 460

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/469 (73%), Positives = 398/469 (84%), Gaps = 16/469 (3%)

Query: 1090 EAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAI 1149
            EAA R++  +C           +GG   ++ LATLD+FAGCGGLSEGLQQ+G+S TKWAI
Sbjct: 5    EAACRKRTSEC-----------KGGECDKSRLATLDVFAGCGGLSEGLQQAGVSLTKWAI 53

Query: 1150 EYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVIN 1209
            EYEEPAGEAF LNHP++LM IN+CNVILRA+M  CGDA+DCVSTSEA ELA  LDE  I 
Sbjct: 54   EYEEPAGEAFHLNHPDALMFINDCNVILRAIMSACGDADDCVSTSEATELAEKLDEKDIR 113

Query: 1210 NLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVR 1269
            NLP PGQVDFINGGPPCQGFSGMNRFNQ  WSK+QCEMILAFLSFADYF+PR+FLLENVR
Sbjct: 114  NLPRPGQVDFINGGPPCQGFSGMNRFNQGKWSKMQCEMILAFLSFADYFRPRFFLLENVR 173

Query: 1270 NFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPE 1329
            NFV+FNKGQTFRLTLASLLEMGYQVRFG+LEAGA+GV QSR+RAFIWAASP +TLPEWPE
Sbjct: 174  NFVTFNKGQTFRLTLASLLEMGYQVRFGVLEAGAYGVPQSRRRAFIWAASPEETLPEWPE 233

Query: 1330 PMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN 1389
            PMHVF  PELKI       Y+AVRSTA G PFRA+TVRD IGDLP +GNGA +T MEY  
Sbjct: 234  PMHVFPGPELKI-----NNYAAVRSTATGGPFRAITVRDAIGDLPNIGNGACETTMEYPR 288

Query: 1390 DPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            +  SW+Q++ RG+M++LTDHISK+MNELNLIRC+KIPKRPGADWH + + KV+LS+G++ 
Sbjct: 289  EASSWYQRKFRGDMSILTDHISKKMNELNLIRCKKIPKRPGADWHAIKNGKVRLSSGRIA 348

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             L+P  L N  KRHNQWKG+ GRLDWEG+FPTSIT+PQP+GKVGMCFHPDQDRIL+VREC
Sbjct: 349  KLLPSWLTNKGKRHNQWKGVLGRLDWEGHFPTSITNPQPLGKVGMCFHPDQDRILSVREC 408

Query: 1510 ARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            AR+QGFPDSY+F G + HKHRQ+GNAVPP LAFALGRKLKEAVE K ST
Sbjct: 409  ARTQGFPDSYKFSGQMHHKHRQVGNAVPPPLAFALGRKLKEAVERKHST 457


>gi|115455937|ref|NP_001051569.1| Os03g0798300 [Oryza sativa Japonica Group]
 gi|113550040|dbj|BAF13483.1| Os03g0798300, partial [Oryza sativa Japonica Group]
          Length = 413

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/412 (81%), Positives = 381/412 (92%)

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
            TKWAIEYEEPAG+AF  NHPE+ + + NCNVIL+A+M+KCGD++DC+STSEAAE AA L 
Sbjct: 2    TKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAIMDKCGDSDDCISTSEAAERAAKLS 61

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
            E+ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FL
Sbjct: 62   EDKIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFL 121

Query: 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL 1324
            LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA+GV+QSRKRAFIWAA+P +TL
Sbjct: 122  LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPGETL 181

Query: 1325 PEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            PEWPEPMHVFA+PELKI L D   Y+AV+STA GAPFR++TVRDTIGDLPAV NGA K  
Sbjct: 182  PEWPEPMHVFASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENGAGKPT 241

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS 1444
            ++Y + PVSWFQK+IR +MA L DHISKEMNELNLIRC+ IPKRPG DWHDLPDEKVKLS
Sbjct: 242  IQYGSGPVSWFQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLS 301

Query: 1445 TGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1504
            TGQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHP+QDRI+
Sbjct: 302  TGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRII 361

Query: 1505 TVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            TVRECARSQGFPDSY+F G+IQ+KHRQIGNAVPP LA+ALGRKLK+A+++KR
Sbjct: 362  TVRECARSQGFPDSYRFAGNIQNKHRQIGNAVPPPLAYALGRKLKQAIDAKR 413


>gi|213498012|emb|CAS84141.1| DNA (cytosine-5) methyltransferase [Nicotiana tomentosiformis]
          Length = 395

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/394 (85%), Positives = 370/394 (93%)

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
            GLSEGLQ+SG+S TKWAIEYEEPAG+AFKLNHPE+ + I NCNVILRAVM+KCGDAEDC+
Sbjct: 1    GLSEGLQRSGVSDTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVILRAVMQKCGDAEDCI 60

Query: 1192 STSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1251
            STSEA+ELAA++DEN +N+LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF
Sbjct: 61   STSEASELAAAMDENELNSLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 120

Query: 1252 LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
            LSFADY++P++FLLENVRNFVSFN+ QTFRLT+ASLLEMGYQVRFGILEAGAFGV QSRK
Sbjct: 121  LSFADYYRPKFFLLENVRNFVSFNQKQTFRLTVASLLEMGYQVRFGILEAGAFGVPQSRK 180

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIG 1371
            RAFIWAASP + LPEWPEPMHVF  PELKI LS+   Y+AVRSTA+GAPFR++TVRDTIG
Sbjct: 181  RAFIWAASPEEILPEWPEPMHVFGVPELKITLSETCHYAAVRSTASGAPFRSLTVRDTIG 240

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            DLPAVGNGASKT +EYQ DP+SWFQ++IRGN   L+DHI+KEMNELNLIRCQ+IPKRPGA
Sbjct: 241  DLPAVGNGASKTCIEYQVDPISWFQRKIRGNSITLSDHITKEMNELNLIRCQRIPKRPGA 300

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
            DW DLPDEKVKL  GQ+VDLIPWCLPNTAKRHNQWKGLFGRLDW+GNFPTSITDPQPMGK
Sbjct: 301  DWRDLPDEKVKLCNGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWDGNFPTSITDPQPMGK 360

Query: 1492 VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
            VGMCFHPDQDRI+TVRECARSQGFPDSYQF G+I
Sbjct: 361  VGMCFHPDQDRIVTVRECARSQGFPDSYQFAGNI 394


>gi|147771321|emb|CAN71866.1| hypothetical protein VITISV_027340 [Vitis vinifera]
          Length = 374

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/372 (89%), Positives = 351/372 (94%)

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            MEKCGDA+DC+STSEAAELA SL E  INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW
Sbjct: 1    MEKCGDADDCLSTSEAAELATSLGEKDINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 60

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            SKVQCEMILAFLSFADYF+PR+FLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRFGILE
Sbjct: 61   SKVQCEMILAFLSFADYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILE 120

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            AGA+GVSQSRKR FIWAASP +TLPEWPEPMHVFA PELKI LS N QY+AVRSTA GAP
Sbjct: 121  AGAYGVSQSRKRVFIWAASPEETLPEWPEPMHVFAVPELKITLSKNMQYAAVRSTATGAP 180

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            FRA+TVRDTIGDLPAV NGASKT +EYQN PVSWFQK+IRGNM VLTDHISKEMNELNLI
Sbjct: 181  FRAITVRDTIGDLPAVTNGASKTGLEYQNGPVSWFQKKIRGNMMVLTDHISKEMNELNLI 240

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            RCQKIPK+PGADW  LPDEKV LSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP
Sbjct: 241  RCQKIPKQPGADWRSLPDEKVALSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 300

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            TSITDPQPMGKVGMCFHP QDR+++VRECARSQGFPDSY+F G+IQHKHRQIGNAVPP L
Sbjct: 301  TSITDPQPMGKVGMCFHPXQDRLVSVRECARSQGFPDSYKFSGNIQHKHRQIGNAVPPPL 360

Query: 1541 AFALGRKLKEAV 1552
            AFALGRKLKEAV
Sbjct: 361  AFALGRKLKEAV 372


>gi|219885163|gb|ACL52956.1| unknown [Zea mays]
          Length = 385

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/376 (83%), Positives = 345/376 (91%)

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M+KCGD +DCVSTSEAAE AA L E  INNLP+PG+V+FINGGPPCQGFSGMNRFNQS W
Sbjct: 1    MDKCGDTDDCVSTSEAAEQAAKLPEVNINNLPVPGEVEFINGGPPCQGFSGMNRFNQSPW 60

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            SKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRL +ASLLEMGYQVRFGILE
Sbjct: 61   SKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLAVASLLEMGYQVRFGILE 120

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            AGAFGV+QSRKRAFIWAA+P + LP+WPEPMHVFA+PELKI L D   Y+A RSTA GAP
Sbjct: 121  AGAFGVAQSRKRAFIWAAAPGEMLPDWPEPMHVFASPELKITLPDGQYYAAARSTAGGAP 180

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            FRA+TVRDTIGDLP VGNGASK  +EY  +PVSWFQK+IRGNM VL DHISKEMNELNLI
Sbjct: 181  FRAITVRDTIGDLPKVGNGASKLTLEYGGEPVSWFQKKIRGNMMVLNDHISKEMNELNLI 240

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            RCQ IPKRPG DWHDLPDEKVKLS GQ+ DLIPWCLPNTAKRHNQWKGL+GRLDWEGNFP
Sbjct: 241  RCQHIPKRPGCDWHDLPDEKVKLSNGQMADLIPWCLPNTAKRHNQWKGLYGRLDWEGNFP 300

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            TS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPDSY+F G+IQ+KHRQIGNAVPP L
Sbjct: 301  TSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDSYEFAGNIQNKHRQIGNAVPPPL 360

Query: 1541 AFALGRKLKEAVESKR 1556
            A+ALGRKLKEAV+ ++
Sbjct: 361  AYALGRKLKEAVDKRQ 376


>gi|108711567|gb|ABF99362.1| expressed protein [Oryza sativa Japonica Group]
 gi|215766031|dbj|BAG98259.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 376

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/376 (82%), Positives = 350/376 (93%)

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M+KCGD++DC+STSEAAE AA L E+ I NLP+PG+V+FINGGPPCQGFSGMNRFNQS W
Sbjct: 1    MDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPW 60

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            SKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE
Sbjct: 61   SKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 120

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            AGA+GV+QSRKRAFIWAA+P +TLPEWPEPMHVFA+PELKI L D   Y+AV+STA GAP
Sbjct: 121  AGAYGVAQSRKRAFIWAAAPGETLPEWPEPMHVFASPELKITLPDGKFYAAVKSTAAGAP 180

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            FR++TVRDTIGDLPAV NGA K  ++Y + PVSWFQK+IR +MA L DHISKEMNELNLI
Sbjct: 181  FRSITVRDTIGDLPAVENGAGKPTIQYGSGPVSWFQKKIRSDMASLNDHISKEMNELNLI 240

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            RC+ IPKRPG DWHDLPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGNFP
Sbjct: 241  RCKHIPKRPGCDWHDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFP 300

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            TS+TDPQPMGKVGMCFHP+QDRI+TVRECARSQGFPDSY+F G+IQ+KHRQIGNAVPP L
Sbjct: 301  TSVTDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYRFAGNIQNKHRQIGNAVPPPL 360

Query: 1541 AFALGRKLKEAVESKR 1556
            A+ALGRKLK+A+++KR
Sbjct: 361  AYALGRKLKQAIDAKR 376


>gi|343173010|gb|AEL99208.1| DNA (cytosine-5)-methyltransferase, partial [Silene latifolia]
          Length = 521

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/511 (63%), Positives = 398/511 (77%), Gaps = 8/511 (1%)

Query: 59  RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDF 118
           R+ PKR AAC+DFKEK+VR+SEK  LV  K++   ++EI  +GLT   D  R NRRL DF
Sbjct: 19  RRMPKRAAACSDFKEKAVRMSEKDDLVNRKREITVENEIAVIGLTTGHDDPRANRRLVDF 78

Query: 119 ILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG 178
           I HD  G  QP+E+LE+ DLFISG+ILPL+ S D  K+KGV+CEGFGRIE+W ISGYEDG
Sbjct: 79  IFHDGEGKAQPVELLEVTDLFISGVILPLEPSGDSLKDKGVKCEGFGRIETWDISGYEDG 138

Query: 179 SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLA 238
           +P IW+STDIADY C+KPA+SY+K Y LF+EKA ACIE YKKLS++SGGN D ++DELLA
Sbjct: 139 TPTIWVSTDIADYACVKPAASYRKIYGLFYEKAHACIETYKKLSRSSGGNPDITLDELLA 198

Query: 239 GVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEES 298
            +VR+M+GSK F  G SIK+F++S GEFI+NQLIGLD TS K +QKF +LPVLVAL++E 
Sbjct: 199 AIVRAMNGSKNFPPGASIKEFILSWGEFIYNQLIGLDATSNKKEQKFIDLPVLVALRDEC 258

Query: 299 SKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQ 358
            K         A     LA G  +  GDG+  +  +S+ P++EDEDAKLARLLQEEE W+
Sbjct: 259 KKNGEI-----APSFMPLATGGALKIGDGETKKESNSSIPSEEDEDAKLARLLQEEEDWR 313

Query: 359 SKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQ 418
           S  Q+K +  T G+ K+YIKINEDEIA DYP P +Y+P+ EE DE + +D+D D  D DQ
Sbjct: 314 SMNQRKGRRPT-GLKKYYIKINEDEIAIDYPLPAYYKPNSEETDEYIIFDNDMDVSDPDQ 372

Query: 419 LPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCT 478
           LPR MLH+WSLYNSDSRL+SLELLPMKPC+DIDVTIFGSG +  D+GSGFC D  +   +
Sbjct: 373 LPRSMLHNWSLYNSDSRLVSLELLPMKPCDDIDVTIFGSGTVTDDDGSGFCFDAGAQ--S 430

Query: 479 SGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLK 538
           S  S   D GG PIYLS+I++WMIE G+SM+FISIRTD+AWYRLGKPSKQYAPWYE VLK
Sbjct: 431 SSASEVPDVGGIPIYLSAIRKWMIEVGASMVFISIRTDMAWYRLGKPSKQYAPWYETVLK 490

Query: 539 TARVAISIITMLKEQTRVSRLSFTDVIKRLS 569
           TAR+ + IIT+LKEQ+RV+RLSFT++IKRLS
Sbjct: 491 TARLGVGIITLLKEQSRVARLSFTEIIKRLS 521


>gi|343173008|gb|AEL99207.1| DNA (cytosine-5)-methyltransferase, partial [Silene latifolia]
          Length = 521

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/511 (63%), Positives = 401/511 (78%), Gaps = 8/511 (1%)

Query: 59  RKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDF 118
           R+ PKR AAC+DFKEK+VR+SEK  LV+ K++   ++EI A+GLT   D  R NRRL DF
Sbjct: 19  RRMPKRAAACSDFKEKAVRMSEKDDLVDRKREITVENEIAAIGLTTGHDDPRANRRLVDF 78

Query: 119 ILHDENGLPQPLEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG 178
           I HD  G  QP+E+LE+ DLFISG+ILPL+ S D  K+KGV+CEGFGRIE+W ISGYEDG
Sbjct: 79  IFHDGEGKAQPVELLEVTDLFISGVILPLEPSGDSLKDKGVKCEGFGRIETWDISGYEDG 138

Query: 179 SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLA 238
           +P IW+STDIADY C+KPA+SY+K Y LF+EKA ACIE YKKLS++SGGN D ++DELLA
Sbjct: 139 TPTIWVSTDIADYACVKPAASYRKIYGLFYEKAHACIETYKKLSRSSGGNPDITLDELLA 198

Query: 239 GVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEES 298
            +VR+M+GSK F  G SIK+F++S+GEFI+NQLIGLD TS K +QKF +LPVLVAL++E 
Sbjct: 199 ALVRAMNGSKNFPPGASIKEFILSRGEFIYNQLIGLDATSNKKEQKFIDLPVLVALRDEC 258

Query: 299 SKRENFVQVNAASLGGNLAIGSKVGDGDGKMDQYGSSTCPADEDEDAKLARLLQEEELWQ 358
            K         A     LA G  +  GDG+  +  +S+ P++EDEDAKLARLLQEEE W+
Sbjct: 259 KKNGEI-----APSFMPLATGGALKIGDGETKKESNSSIPSEEDEDAKLARLLQEEEDWR 313

Query: 359 SKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQ 418
           S  Q+K +  T G NK+YIKINEDEIA DYP P +Y+P+ EE DE + +D+D D  D DQ
Sbjct: 314 SMNQRKGRRPT-GSNKYYIKINEDEIAIDYPLPAYYKPNSEETDEYIIFDNDMDVSDPDQ 372

Query: 419 LPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCT 478
           LPR MLH+WSLYNSDSRL+SLELLPMKPC+DIDVTIFGSG +  D+GSGFC D  +   +
Sbjct: 373 LPRSMLHNWSLYNSDSRLVSLELLPMKPCDDIDVTIFGSGTVTDDDGSGFCFDAAAQSSS 432

Query: 479 SGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLK 538
           +  S   D GG PIYLS+I++WMIE G+SM+FISIRTD+AWYRLGKPSKQYAPWYE VLK
Sbjct: 433 A--SEVPDVGGIPIYLSAIRKWMIEVGASMVFISIRTDMAWYRLGKPSKQYAPWYETVLK 490

Query: 539 TARVAISIITMLKEQTRVSRLSFTDVIKRLS 569
           TAR+ + IIT+LKEQ+RV+RLSFT++IKRLS
Sbjct: 491 TARLGVGIITLLKEQSRVARLSFTEIIKRLS 521


>gi|147853569|emb|CAN82351.1| hypothetical protein VITISV_019436 [Vitis vinifera]
          Length = 377

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 288/379 (75%), Positives = 328/379 (86%), Gaps = 5/379 (1%)

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            + + CGDA+DCVSTSEA ELA  LDE  I NLP PGQVDFINGGPPCQGFSGMNRFNQ  
Sbjct: 1    MAQACGDADDCVSTSEATELAEKLDEKDIRNLPRPGQVDFINGGPPCQGFSGMNRFNQGK 60

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
            WSK+QCEMILAFLSFADYF+PR+FLLENVRNFV+FNKGQTFRLTLASLLEMGYQVRFG+L
Sbjct: 61   WSKMQCEMILAFLSFADYFRPRFFLLENVRNFVTFNKGQTFRLTLASLLEMGYQVRFGVL 120

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            EAGA+GV QSR+RAFIWAASP +TLPEWPEPMHVF  PELKI       Y+AVRSTA G 
Sbjct: 121  EAGAYGVPQSRRRAFIWAASPEETLPEWPEPMHVFPGPELKI-----NNYAAVRSTATGG 175

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            PFRA+TVRD IGDLP +GNGA +T MEY  +  SW+Q++ RG+M++LTDHISK+MNELNL
Sbjct: 176  PFRAITVRDAIGDLPNIGNGACETTMEYPREASSWYQRKFRGDMSILTDHISKKMNELNL 235

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            IRC+KIPKRPGADWH + + KV+LS+G++  L+P  L N  KRHNQWKG+ GRLDWEG+F
Sbjct: 236  IRCKKIPKRPGADWHAIKNGKVRLSSGRIAKLLPSWLTNKGKRHNQWKGVLGRLDWEGHF 295

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PTSIT+PQP+GKVGMCFHPDQDRIL+VRECAR+QGFPD Y+F G + HKHRQ+GNAVPP 
Sbjct: 296  PTSITNPQPLGKVGMCFHPDQDRILSVRECARTQGFPDXYKFSGQMHHKHRQVGNAVPPP 355

Query: 1540 LAFALGRKLKEAVESKRST 1558
            LAFALGRKLKEAVE K ST
Sbjct: 356  LAFALGRKLKEAVERKHST 374


>gi|384244928|gb|EIE18425.1| S-adenosyl-L-methionine-dependent methyltransferase, partial
            [Coccomyxa subellipsoidea C-169]
          Length = 468

 Score =  575 bits (1481), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/454 (60%), Positives = 338/454 (74%), Gaps = 23/454 (5%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            LAT+DIFAGCGGLSEGL ++G + TKWAIEYE+PA EAFK+N+P+++    NCNV+L A 
Sbjct: 1    LATMDIFAGCGGLSEGLHRAGAARTKWAIEYEQPAAEAFKVNNPDAVTWCCNCNVLLTAA 60

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M K G A+ C ++ EA E AA LD   +  LP PG+VDF+ GGPPCQG+SGMNRFN+ TW
Sbjct: 61   MTKAGAADFCDASEEAKEQAAKLDAETVATLPAPGEVDFLCGGPPCQGYSGMNRFNKGTW 120

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY-------- 1292
            S VQ  M++A+LS+AD+++PRYFLLENVRNFVS NK   FRLTL SLL+MGY        
Sbjct: 121  SLVQNSMVMAYLSYADFYRPRYFLLENVRNFVSHNKSHAFRLTLRSLLDMGYQARLLISI 180

Query: 1293 ----------QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
                      QVRFG+L AG FGVSQSRKR FIW  +P + LP+WP P+HVF +P+L I 
Sbjct: 181  PLALGIWECEQVRFGVLNAGNFGVSQSRKRTFIWGVAPDNELPQWPAPLHVFHSPQLTIK 240

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
            L    +Y+AV    +GAP R +TV+D IGDLP + NGA+   M+Y   P+S FQK IRG 
Sbjct: 241  LPGGVEYTAV-PKGSGAPLRTVTVKDAIGDLPPLTNGANLEDMQYAGPPISAFQKAIRGG 299

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKR-PGADWHDLPDEKVKLSTGQVV--DLIPWCLPNT 1459
              VL DHI KEMNELNL RC+ IPK  PGADW  L  E V  +  + +   L+PWCLPNT
Sbjct: 300  CTVLHDHICKEMNELNLERCRCIPKNTPGADWRVL-QEIVAANPDRTLFKPLVPWCLPNT 358

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
            A RHN W+GLFGRLD+ G+FPTS+TDPQPMGKVG  FHPDQDRI++VRECAR+QGFPDS+
Sbjct: 359  ADRHNGWRGLFGRLDYGGHFPTSVTDPQPMGKVGQVFHPDQDRIVSVRECARAQGFPDSF 418

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            +F+G++ +KHRQIGNAVP  LA+ALGR+L+ A+E
Sbjct: 419  RFYGNVHNKHRQIGNAVPVPLAYALGRQLRSALE 452


>gi|6684525|gb|AAF23609.1| DNA (cytosine-5)-methyltransferase [Homo sapiens]
          Length = 1280

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 395/1294 (30%), Positives = 618/1294 (47%), Gaps = 211/1294 (16%)

Query: 397  SEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFG 456
            + E+     A +S ++S   + LP+  L  +S+Y     L  ++   ++  ++I++   G
Sbjct: 46   TNEKLSIFDANESGFES--YEALPQHKLTCFSVYCKHGHLCPIDTGLIE--KNIELFFSG 101

Query: 457  SGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIR 514
            S K I D         D      GV+G          L  I EW I    G     I   
Sbjct: 102  SAKPIYD---------DDPSLEGGVNGKN--------LGPINEWWITGFDGGEKALIGFS 144

Query: 515  TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
            T  A Y L  PS +YAP +   L   ++ IS I +   Q+  S  ++ D+I ++      
Sbjct: 145  TSFAEYILMDPSPEYAPIFG--LMQEKIYISKIVVEFLQSN-SDSTYEDLINKIETTVPP 201

Query: 575  QHSYISSDPAAVERYVVVHGQIVLQLFAEYPD--EQIKKCAFIIGLMKKMEERHHTKWLV 632
                ++      E  ++ H Q V++    Y +  +  ++  F+   M+ + +        
Sbjct: 202  SGLNLNR---FTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQ 258

Query: 633  KKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEET--- 689
            ++ + ++  I  + R          R   +ATTT+L+ +I+  +++    +D +E+    
Sbjct: 259  RRAQARRQTIRHSTREK-------DRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENA 311

Query: 690  -------ACEANEDEE----------VEEQGENEEDDTEEEKLISE-------------- 718
                    CE  +  E          V+  G        +E+                  
Sbjct: 312  FKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDD 371

Query: 719  ---ERQISCSVAVQIKSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEV 774
               E      +    K +  K  I+W GE V+  G  + YKK  +  E + +G  V V  
Sbjct: 372  NIPEMPSPKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIP 431

Query: 775  DELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQD 834
            D+  +   +  V  ++E +   ++FH      G+ TVLG T++  E+FL ++C D++L  
Sbjct: 432  DDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSY 491

Query: 835  I--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
            I  K  V+    S  W  +   D  +  + D  +             Y   L++ +  A 
Sbjct: 492  IHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKT------------YFYQLWYDQDYAR 539

Query: 893  FILPVDSMGL---GVGSCHACGTKESEKEKETFKVHSK-----TSFVYGTAE-----YFV 939
            F  P  +          C +C      ++KE  +V  +     +  +Y +A      Y V
Sbjct: 540  FESPPKTQPTEDNKFKFCVSCARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRV 599

Query: 940  HDYVYISPHHFTWDKAEGETFKAGRNVGL------------------------KPYVVCQ 975
             D VY+ P  FT++       K  R   +                        +PY + +
Sbjct: 600  GDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGR 659

Query: 976  LLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEA 1032
            + EI  PK+   R      +++V +F+RP++   S   +Y +DI  +Y+S+E  ++  +A
Sbjct: 660  IKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKA 719

Query: 1033 IAGKCEVRKKNDIPAC------NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGS 1086
            + G+C V    D+P C        P  F   +F E  +  SK S +  P H +   + G 
Sbjct: 720  VQGRCTVEYGEDLPECVQVYSMGGPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGK 775

Query: 1087 LDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTK 1146
               +   + K   C   E E+E++          L TLD+F+GCGGLSEG  Q+GIS T 
Sbjct: 776  GKGKGKGKPKSQACEPSEPEIEIKLP-------KLRTLDVFSGCGGLSEGFHQAGISDTL 828

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIE  +PA +AF+LN+P S +   +CN++L+ VM              A E   S  + 
Sbjct: 829  WAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVM--------------AGETTNSRGQR 874

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
                LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLE
Sbjct: 875  ----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLE 930

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP 
Sbjct: 931  NVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPL 990

Query: 1327 WPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP V NGAS   
Sbjct: 991  FPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALE 1049

Query: 1385 MEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVK 1442
            + Y  +P SWFQ+++RG     +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+
Sbjct: 1050 ISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVR 1109

Query: 1443 LSTG-----------------------------------------QVVDLIPWCLPNTAK 1461
            LS G                                         Q   LIPWCLP+T  
Sbjct: 1110 LSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGN 1169

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
            RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+ 
Sbjct: 1170 RHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRL 1229

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             G+I  KHRQ+GNAVPP LA A+G ++K  + +K
Sbjct: 1230 FGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAK 1263



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 67  PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 125

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 126 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 181

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 182 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 236

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 237 QPIFLTPCMRDL 248


>gi|426387162|ref|XP_004060043.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Gorilla gorilla
            gorilla]
          Length = 1790

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 391/1246 (31%), Positives = 596/1246 (47%), Gaps = 213/1246 (17%)

Query: 448  EDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--G 505
            ++I++   GS K I D         D      GV+G          L  I EW I    G
Sbjct: 603  KNIELFFSGSAKPIYD---------DDPSLEGGVNGKN--------LGPINEWWITGFDG 645

Query: 506  SSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVI 565
                 I   T  A Y L  PS +YAP +   L   ++ IS I +   Q+  S  ++ D+I
Sbjct: 646  GEKALIGFSTSFAEYILMDPSPEYAPIFG--LMQEKIYISKIVVEFLQSN-SDSTYEDLI 702

Query: 566  KRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEY-----PDEQIKKCAFIIGLMK 620
             ++          ++      E  ++ H Q V++    Y      DEQ     F+   M+
Sbjct: 703  NKIETTVPPSGLNLNR---FTEDSLLRHAQFVVEQVESYDEAGDSDEQP---IFLTPCMR 756

Query: 621  KMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNY 680
             + +        ++ + ++  I  + R          R   +ATTT+L+ +I+  +++  
Sbjct: 757  DLIKLAGVTLGQRRAQARRQTIRHSTREK-------DRGPTKATTTKLVYQIFDTFFAEQ 809

Query: 681  SPEDGKEET----------ACEANEDEE----------VEEQGENEEDDTEEEKLISE-- 718
              +D +E+            CE  +  E          V+  G        +E+      
Sbjct: 810  IEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMA 869

Query: 719  ---------------ERQISCSVAVQIKSRSTKKEITWEGECVRKSGL-ALYKKAIVHGE 762
                           E      +    K +  K  I+W GE V+  G  + YKK  +  E
Sbjct: 870  MKEADDDEEVDDNIPEMPSPKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAE 929

Query: 763  VVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVF 822
             + +G  V V  D+  +   +  V  ++E +   ++FH      G+ TVLG T++  E+F
Sbjct: 930  TLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELF 989

Query: 823  LANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYY 880
            L ++C D++L  I  K  V+    S  W  +   D         +  EE   K   T +Y
Sbjct: 990  LVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD-------PESLLEEGDGK---TYFY 1039

Query: 881  CKSLYWPERGAFFILPVDSMGL---GVGSCHACGTKESEKEKETFKVHSK-----TSFVY 932
               L++ +  A F  P  +          C +C      ++KE  +V  +     +  +Y
Sbjct: 1040 --QLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLAEMRQKEIPRVLEQLEDLDSRVLY 1097

Query: 933  GTAE-----YFVHDYVYISPHHFTWDKAEGETFKAGRNVGL------------------- 968
             +A      Y V D VY+ P  FT++       K  R   +                   
Sbjct: 1098 YSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGS 1157

Query: 969  -----KPYVVCQLLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVY 1020
                 +PY + ++ EI  PK+   R      +++V +F+RP++   S   +Y +DI  +Y
Sbjct: 1158 NLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLY 1217

Query: 1021 YSEETHLIFVEAIAGKCEVRKKNDIPAC------NAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            +S+E  ++  +A+ G+C V    D+P C        P  F   +F E  +  SK S +  
Sbjct: 1218 WSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRF---YFLEAYNAKSK-SFEDP 1273

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLS 1134
            P H +   + G    +   + K   C   E E+E++          L TLD+F+GCGGLS
Sbjct: 1274 PNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLP-------KLRTLDVFSGCGGLS 1326

Query: 1135 EGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194
            EG  Q+GIS T WAIE  +PA +AF+LN+P S +   +CN++L+ VM             
Sbjct: 1327 EGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVM------------- 1373

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
             A E   S  +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+
Sbjct: 1374 -AGETTNSRGQR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSY 1428

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAF 1314
             DY++PR+FLLENVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA 
Sbjct: 1429 CDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAI 1488

Query: 1315 IWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGD 1372
            I AA+P + LP +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ D
Sbjct: 1489 ILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSD 1547

Query: 1373 LPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPG 1430
            LP V NGAS   + Y  +P SWFQ+++RG     +L DHI K+M+ L   R + IP  PG
Sbjct: 1548 LPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPG 1607

Query: 1431 ADWHDLPDEKVKLSTG-----------------------------------------QVV 1449
            +DW DLP+ +V+LS G                                         Q  
Sbjct: 1608 SDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFN 1667

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VREC
Sbjct: 1668 TLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVREC 1727

Query: 1510 ARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            ARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++K  + +K
Sbjct: 1728 ARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAK 1773



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +LF SG   P+ +  D   E GV  +  G I  W I+G++ G   +I  ST  A+Y  + 
Sbjct: 606 ELFFSGSAKPIYDD-DPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMD 664

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  Y   + L  EK    I + K + +    NSD + ++L+  +  ++  S     G++
Sbjct: 665 PSPEYAPIFGLMQEK----IYISKIVVEFLQSNSDSTYEDLINKIETTVPPS-----GLN 715

Query: 256 IKDF----VISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
           +  F    ++   +F+  Q+   DE    ++Q     P +  L
Sbjct: 716 LNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDL 758


>gi|297276085|ref|XP_001104704.2| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Macaca mulatta]
          Length = 1280

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 395/1294 (30%), Positives = 618/1294 (47%), Gaps = 211/1294 (16%)

Query: 397  SEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFG 456
            + E+     A +S ++S   + LP+  L  +S+Y     L  ++   ++  ++I++   G
Sbjct: 46   TNEKLSIFDANESGFES--YEALPQHKLTCFSVYCKHGHLCPIDTGLIE--KNIELFFSG 101

Query: 457  SGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIR 514
            S K I D         D      GV+G          L  I EW I    G     I   
Sbjct: 102  SAKPIYD---------DDPSLEGGVNGKN--------LGPINEWWITGFDGGEKALIGFS 144

Query: 515  TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
            T  A Y L  PS +YAP +   L   ++ IS I +   Q+  S  ++ D+I ++      
Sbjct: 145  TSFAEYILMDPSPEYAPIFG--LMQEKIYISKIVVEFLQSN-SDSTYEDLINKIETTVPP 201

Query: 575  QHSYISSDPAAVERYVVVHGQIVLQLFAEYPD--EQIKKCAFIIGLMKKMEERHHTKWLV 632
                ++      E  ++ H Q V++    Y +  +  ++  F+   M+ + +        
Sbjct: 202  SGLNLNR---FTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQ 258

Query: 633  KKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEET--- 689
            ++ + ++  I  + R          R   +ATTT+L+ +I+  +++    +D +E+    
Sbjct: 259  RRAQARRQAIRHSTREK-------DRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENA 311

Query: 690  -------ACEANEDEE----------VEEQGENEEDDTEEEKLISE-------------- 718
                    CE  +  E          V+  G        +E+                  
Sbjct: 312  FKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDD 371

Query: 719  ---ERQISCSVAVQIKSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEV 774
               E      +    K +  K  I+W GE V+  G  + YKK  +  E + +G  V V  
Sbjct: 372  NIPEMPSPKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIP 431

Query: 775  DELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQD 834
            D+  +   +  V  ++E +   ++FH      G+ TVLG T++  E+FL ++C D++L  
Sbjct: 432  DDSSKPLYLARVTALWEDSINGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSY 491

Query: 835  IKQTVVVDIRSVP--WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
            I   V V  +S    W  +   D  +  + D  +             Y   L++ +  A 
Sbjct: 492  IHSKVKVIYKSPSENWAMEGGMDPESLLEGDDGKT------------YFYQLWYDQDYAR 539

Query: 893  FILPVDSMGL---GVGSCHACGTKESEKEKETFKVHSK-----TSFVYGTAE-----YFV 939
            F  P  +          C +C      ++KE  +V  +     +  +Y +A      Y V
Sbjct: 540  FESPPKTQPTEDNKFKFCASCARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGIPYRV 599

Query: 940  HDYVYISPHHFTWDKAEGETFKAGRNVGL------------------------KPYVVCQ 975
             D VY+ P  FT++       K  R   +                        +PY + +
Sbjct: 600  GDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGR 659

Query: 976  LLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEA 1032
            + EI  PK+   R      +++V +F+RP++   S   +Y +DI  +Y+S+E  ++  +A
Sbjct: 660  IKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKA 719

Query: 1033 IAGKCEVRKKNDIPAC------NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGS 1086
            + G+C V    D+P C        P  F   +F E  +  SK S +  P H +   + G 
Sbjct: 720  VQGRCTVEYGEDLPECVQVYSMGGPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGK 775

Query: 1087 LDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTK 1146
               +   + K   C   E E+E++          L TLD+F+GCGGLSEG  Q+GIS T 
Sbjct: 776  GKGKGKGKPKSQACEPSEPEMEIKLP-------KLRTLDVFSGCGGLSEGFHQAGISDTL 828

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIE  +PA +AF+LN+P S +   +CN++L+ VM              A E   S  + 
Sbjct: 829  WAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVM--------------AGETTNSRGQR 874

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
                LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLE
Sbjct: 875  ----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLE 930

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP 
Sbjct: 931  NVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPL 990

Query: 1327 WPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP V NGAS   
Sbjct: 991  FPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALE 1049

Query: 1385 MEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVK 1442
            + Y  +P SWFQ+++RG     +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+
Sbjct: 1050 ISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVR 1109

Query: 1443 LSTG-----------------------------------------QVVDLIPWCLPNTAK 1461
            LS G                                         Q   LIPWCLP+T  
Sbjct: 1110 LSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACHPAARQFNTLIPWCLPHTGN 1169

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
            RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+ 
Sbjct: 1170 RHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRL 1229

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             G+I  KHRQ+GNAVPP LA A+G ++K  + +K
Sbjct: 1230 FGNILDKHRQVGNAVPPPLAKAIGLEIKLGMLAK 1263



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 67  PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 125

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 126 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 181

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 182 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 236

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 237 QPIFLTPCMRDL 248


>gi|441628422|ref|XP_003275776.2| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 1
            isoform 1 [Nomascus leucogenys]
          Length = 1616

 Score =  544 bits (1402), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 731  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 790

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 791  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 850

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 851  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEENKFKFCVSCAR 898

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 899  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 958

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 959  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1018

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1019 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1078

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1079 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEMEI 1134

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1135 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1187

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1188 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1229

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1230 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1289

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1349

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1350 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGTQYQPI 1408

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1409 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1468

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1469 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1528

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1529 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1588

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1589 GLEIKLCMLAK 1599



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 403 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 461

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 462 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 517

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 518 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 572

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 573 QPIFLTPCMRDL 584


>gi|317108162|ref|NP_872592.2| DNA (cytosine-5)-methyltransferase 1 [Bos taurus]
 gi|108935977|sp|Q24K09.1|DNMT1_BOVIN RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1
 gi|89994055|gb|AAI14064.1| DNA (cytosine-5-)-methyltransferase 1 [Bos taurus]
 gi|296485884|tpg|DAA27999.1| TPA: DNA (cytosine-5)-methyltransferase 1 [Bos taurus]
          Length = 1611

 Score =  544 bits (1401), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 323/910 (35%), Positives = 478/910 (52%), Gaps = 135/910 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 728  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 788  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWAMEGGVD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 848  PEALMSEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 895

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVVEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      +++V
Sbjct: 956  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRV 1015

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1016 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAG 1075

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1076 GPDRF---YFLEAYNAKSK-SFEDPPNHARSTGNKGKGKGKGKNRTKSQTCEPSELETEI 1131

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1132 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1184

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1185 TEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1226

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1227 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1286

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1287 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1346

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1347 FVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLRGSQYQPI 1405

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1406 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNGCSS 1465

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1466 SGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1525

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1526 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1585

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1586 LEIKRCMLAK 1595



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 399 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 457

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 458 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 513

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 514 LQSNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 572

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 573 IFLSPCMRDL 582


>gi|344282771|ref|XP_003413146.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 1 [Loxodonta
            africana]
          Length = 1611

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 327/913 (35%), Positives = 479/913 (52%), Gaps = 140/913 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 726  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 785

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 786  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWAMEGGMD 845

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF-----ILPVDSMGLGVGSCHAC 910
                 K D  +             Y   L++ +  A F     I P +        C +C
Sbjct: 846  PEPMMKEDDGKT------------YFYQLWYDQDYARFESPPKIQPTEDNKYKF--CASC 891

Query: 911  GTKESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETF 960
                  ++KE  +V  +        +Y +A     +Y V D VY+ P  FT++       
Sbjct: 892  ARLVEMRQKEIPRVMEQLEDLDNRVLYSSATKNGIQYRVGDGVYLPPEAFTFNIKLSSPV 951

Query: 961  KAGRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQV 995
            K  R   +                        +PY + ++ EI   K+   R      ++
Sbjct: 952  KRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCTKKSNGRPNETDIKI 1011

Query: 996  KVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC----- 1048
            ++ +F+RP++   S   +Y +DI  +Y+S+E  ++  + + G+C V    D+P C     
Sbjct: 1012 RLNKFYRPENTHKSTPASYHADINLLYWSDEEAMVDFKTVQGRCTVEYGEDLPECVQDYS 1071

Query: 1049 -NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
               P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+
Sbjct: 1072 AGGPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKAKSQACEPSEPEM 1127

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
            EV+          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S 
Sbjct: 1128 EVKLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGST 1180

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
            +   +CNV+L+ VM              A E   S  +     LP  G V+ + GGPPCQ
Sbjct: 1181 VFTEDCNVLLKLVM--------------AGEETNSRGQR----LPQKGDVEMLCGGPPCQ 1222

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            GFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L
Sbjct: 1223 GFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCL 1282

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSD 1345
            + MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D
Sbjct: 1283 VRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDD 1342

Query: 1346 NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--M 1403
                S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG    
Sbjct: 1343 KKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGTQYQ 1401

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------- 1446
             +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                 
Sbjct: 1402 PILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGY 1461

Query: 1447 ------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                                    Q   LIPWCLP+T  RHN W GL+GRL+W+G F T+
Sbjct: 1462 SSNRALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTT 1521

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            +T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA 
Sbjct: 1522 VTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAK 1581

Query: 1543 ALGRKLKEAVESK 1555
            A+G ++K  V +K
Sbjct: 1582 AIGLEIKLCVLAK 1594



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +L  SG   P+ +  D   E GV  +  G I
Sbjct: 399 PQHKLTYFSVYCKHGHLCPIDTGLIEKNVELLFSGSAKPIYDD-DPSLEGGVNGKNLGPI 457

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 458 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 513

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            N D + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 514 NNPDLTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 568

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 569 QPIFLTPCMRDL 580


>gi|383408753|gb|AFH27590.1| DNA (cytosine-5)-methyltransferase 1 isoform b [Macaca mulatta]
          Length = 1616

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 731  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSINGQ 790

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V  +S    W  +   D
Sbjct: 791  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKSPSENWAMEGGMD 850

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 851  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 898

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 899  LAEMRQKEIPRVREQLEALDSRVLYYSATKNGIPYRVGDGVYLPPEAFTFNIKLSSPVKR 958

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 959  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1018

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1019 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1078

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1079 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEMEI 1134

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1135 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1187

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1188 TEDCNILLKLVM--------------AGETPTSRGQR----LPQKGDVEMLCGGPPCQGF 1229

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1230 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1289

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1349

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1350 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1408

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1409 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1468

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1469 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1528

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1529 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1588

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1589 GLEIKLCMLAK 1599



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 403 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 461

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 462 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 517

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 518 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 572

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 573 QPIFLTPCMRDL 584


>gi|4503351|ref|NP_001370.1| DNA (cytosine-5)-methyltransferase 1 isoform b [Homo sapiens]
 gi|12231019|sp|P26358.2|DNMT1_HUMAN RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            AltName: Full=CXXC-type zinc finger protein 9; AltName:
            Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI;
            Short=M.HsaI; AltName: Full=MCMT
 gi|1632819|emb|CAA45219.1| DNA (cytosine-5-)-methyltransferase [Homo sapiens]
          Length = 1616

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 731  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 790

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 791  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 850

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 851  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 898

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 899  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 958

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 959  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1018

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1019 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1078

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1079 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1134

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1135 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1187

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1188 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1229

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1230 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1289

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1349

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1350 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1408

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1409 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1468

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1469 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1528

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1529 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1588

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1589 GLEIKLCMLAK 1599



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 403 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 461

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 462 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 517

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 518 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 572

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 573 QPIFLTPCMRDL 584


>gi|344282773|ref|XP_003413147.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 2 [Loxodonta
            africana]
          Length = 1625

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 327/913 (35%), Positives = 479/913 (52%), Gaps = 140/913 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 740  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 799

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 800  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWAMEGGMD 859

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF-----ILPVDSMGLGVGSCHAC 910
                 K D  +             Y   L++ +  A F     I P +        C +C
Sbjct: 860  PEPMMKEDDGKT------------YFYQLWYDQDYARFESPPKIQPTEDNKYKF--CASC 905

Query: 911  GTKESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETF 960
                  ++KE  +V  +        +Y +A     +Y V D VY+ P  FT++       
Sbjct: 906  ARLVEMRQKEIPRVMEQLEDLDNRVLYSSATKNGIQYRVGDGVYLPPEAFTFNIKLSSPV 965

Query: 961  KAGRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQV 995
            K  R   +                        +PY + ++ EI   K+   R      ++
Sbjct: 966  KRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCTKKSNGRPNETDIKI 1025

Query: 996  KVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC----- 1048
            ++ +F+RP++   S   +Y +DI  +Y+S+E  ++  + + G+C V    D+P C     
Sbjct: 1026 RLNKFYRPENTHKSTPASYHADINLLYWSDEEAMVDFKTVQGRCTVEYGEDLPECVQDYS 1085

Query: 1049 -NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
               P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+
Sbjct: 1086 AGGPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKAKSQACEPSEPEM 1141

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
            EV+          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S 
Sbjct: 1142 EVKLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGST 1194

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
            +   +CNV+L+ VM              A E   S  +     LP  G V+ + GGPPCQ
Sbjct: 1195 VFTEDCNVLLKLVM--------------AGEETNSRGQR----LPQKGDVEMLCGGPPCQ 1236

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            GFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L
Sbjct: 1237 GFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCL 1296

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSD 1345
            + MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D
Sbjct: 1297 VRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDD 1356

Query: 1346 NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--M 1403
                S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG    
Sbjct: 1357 KKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGTQYQ 1415

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------- 1446
             +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                 
Sbjct: 1416 PILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGY 1475

Query: 1447 ------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                                    Q   LIPWCLP+T  RHN W GL+GRL+W+G F T+
Sbjct: 1476 SSNRALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTT 1535

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            +T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA 
Sbjct: 1536 VTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAK 1595

Query: 1543 ALGRKLKEAVESK 1555
            A+G ++K  V +K
Sbjct: 1596 AIGLEIKLCVLAK 1608



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +L  SG   P+ +  D   E GV  +  G I
Sbjct: 413 PQHKLTYFSVYCKHGHLCPIDTGLIEKNVELLFSGSAKPIYDD-DPSLEGGVNGKNLGPI 471

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 472 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 527

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            N D + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 528 NNPDLTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 582

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 583 QPIFLTPCMRDL 594


>gi|410226626|gb|JAA10532.1| DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
 gi|410308690|gb|JAA32945.1| DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
          Length = 1616

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 731  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 790

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 791  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 850

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 851  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 898

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 899  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 958

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 959  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1018

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1019 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1078

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1079 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1134

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1135 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1187

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1188 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1229

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1230 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1289

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1349

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1350 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1408

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1409 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1468

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1469 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1528

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1529 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1588

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1589 GLEIKLCMLAK 1599



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 403 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 461

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 462 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 517

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 518 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 572

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 573 QPIFLTPCMRDL 584


>gi|355703123|gb|EHH29614.1| DNA (cytosine-5)-methyltransferase 1 [Macaca mulatta]
          Length = 1632

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 747  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSINGQ 806

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V  +S    W  +   D
Sbjct: 807  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKSPSENWAMEGGMD 866

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 867  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 914

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 915  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGIPYRVGDGVYLPPEAFTFNIKLSSPVKR 974

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 975  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1034

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1035 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1094

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1095 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEMEI 1150

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1151 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1203

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1204 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1245

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1246 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1305

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1306 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1365

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1366 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1424

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1425 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1484

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1485 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1544

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1545 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1604

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1605 GLEIKLCMLAK 1615



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 419 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 477

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 478 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 533

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 534 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 588

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 589 QPIFLTPCMRDL 600


>gi|119604485|gb|EAW84079.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Homo sapiens]
 gi|119604486|gb|EAW84080.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Homo sapiens]
          Length = 1678

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 793  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 852

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 853  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 912

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 913  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 960

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 961  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 1020

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 1021 PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1080

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1081 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1140

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1141 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1196

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1197 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1249

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1250 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1291

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1292 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1351

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1352 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1411

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1412 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1470

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1471 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1530

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1531 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1590

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1591 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1650

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1651 GLEIKLCMLAK 1661



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 465 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 523

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 524 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 579

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 580 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 634

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 635 QPIFLTPCMRDL 646


>gi|114675304|ref|XP_001163764.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 10 [Pan
            troglodytes]
          Length = 1678

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 793  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 852

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 853  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 912

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 913  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 960

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 961  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 1020

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 1021 PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1080

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1081 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1140

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1141 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1196

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1197 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1249

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1250 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1291

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1292 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1351

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1352 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1411

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1412 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1470

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1471 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1530

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1531 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1590

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1591 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1650

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1651 GLEIKLCMLAK 1661



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 465 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 523

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 524 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 579

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 580 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 634

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 635 QPIFLTPCMRDL 646


>gi|397476607|ref|XP_003809690.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Pan paniscus]
          Length = 1631

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 746  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 805

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 806  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 865

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL---GVGSCHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 866  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 913

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 914  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 973

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 974  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1033

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1034 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1093

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1094 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1149

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1150 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1202

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1203 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1244

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1245 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1304

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1305 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1364

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1365 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1423

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1424 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1483

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1484 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1543

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1544 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1603

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1604 GLEIKLCMLAK 1614



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 418 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 476

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 477 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 532

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 533 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 587

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 588 QPIFLTPCMRDL 599


>gi|37728049|gb|AAO44952.1| cytosine-5-methyltransferase [Bos taurus]
          Length = 1611

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 323/910 (35%), Positives = 477/910 (52%), Gaps = 135/910 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 728  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVAALWEDSSNGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 788  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWAMEGGVD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 848  PEALMSEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 895

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVVEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      +++V
Sbjct: 956  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRV 1015

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1016 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAG 1075

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1076 GPDRF---YFLEAYNAKSK-SFEDPPNHARSTGNKGKGKGKGKNRTKSQTCEPSELETEI 1131

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1132 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1184

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1185 TEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1226

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1227 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1286

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1287 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1346

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+     
Sbjct: 1347 FVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLRGSQYQPT 1405

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1406 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNGCSS 1465

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1466 TGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1525

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1526 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1585

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1586 LEIKRCMLAK 1595



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 399 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 457

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 458 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 513

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 514 LQSNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 572

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 573 IFLSPCMRDL 582


>gi|332852917|ref|XP_512361.3| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 11 [Pan
            troglodytes]
 gi|410226624|gb|JAA10531.1| DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
 gi|410308688|gb|JAA32944.1| DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
          Length = 1632

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 323/905 (35%), Positives = 478/905 (52%), Gaps = 136/905 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 747  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 806

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 807  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 866

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 867  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 914

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 915  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 974

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 975  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1034

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1035 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1094

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1095 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1150

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1151 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1203

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1204 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1245

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1246 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1305

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1306 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1365

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1366 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1424

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1425 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1484

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1485 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1544

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1545 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1604

Query: 1545 GRKLK 1549
            G ++K
Sbjct: 1605 GLEIK 1609



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 419 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 477

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 478 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 533

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 534 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 588

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 589 QPIFLTPCMRDL 600


>gi|195927037|ref|NP_001124295.1| DNA (cytosine-5)-methyltransferase 1 isoform a [Homo sapiens]
 gi|116496659|gb|AAI26228.1| DNMT1 protein [Homo sapiens]
 gi|219521538|gb|AAI44094.1| DNA (cytosine-5-)-methyltransferase 1 [Homo sapiens]
          Length = 1632

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 323/905 (35%), Positives = 478/905 (52%), Gaps = 136/905 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 747  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 806

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 807  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 866

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 867  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 914

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 915  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 974

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 975  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1034

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1035 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1094

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1095 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1150

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1151 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1203

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1204 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1245

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1246 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1305

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1306 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1365

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1366 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1424

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1425 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1484

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1485 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1544

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1545 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1604

Query: 1545 GRKLK 1549
            G ++K
Sbjct: 1605 GLEIK 1609



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 419 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 477

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 478 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 533

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 534 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 588

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 589 QPIFLTPCMRDL 600


>gi|62204780|gb|AAH92517.1| DNMT1 protein [Homo sapiens]
          Length = 1511

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 626  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 685

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 686  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 745

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 746  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 793

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 794  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 853

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 854  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 913

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 914  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 973

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 974  GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1029

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1030 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1082

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1083 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1124

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1125 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1184

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1185 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1244

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1245 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1303

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1304 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1363

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1364 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1423

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1424 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1483

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1484 GLEIKLCMLAK 1494



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 298 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 356

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 357 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 412

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 413 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 467

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 468 QPIFLTPCMRDL 479


>gi|410053162|ref|XP_003953403.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Pan troglodytes]
          Length = 1511

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 626  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 685

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 686  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 745

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 746  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 793

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 794  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 853

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 854  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 913

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 914  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 973

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 974  GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1029

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1030 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1082

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1083 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1124

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1125 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1184

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1185 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1244

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1245 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1303

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1304 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1363

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1364 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1423

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1424 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1483

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1484 GLEIKLCMLAK 1494



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 298 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 356

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 357 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 412

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 413 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 467

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 468 QPIFLTPCMRDL 479


>gi|380786361|gb|AFE65056.1| DNA (cytosine-5)-methyltransferase 1 isoform b [Macaca mulatta]
          Length = 1616

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 731  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSINGQ 790

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V  +S    W  +   D
Sbjct: 791  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKSPSENWAMEGGMD 850

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 851  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 898

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 899  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGIPYRVGDGVYLPPEAFTFNIKLSSPVKR 958

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 959  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1018

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1019 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1078

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1079 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEMEI 1134

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1135 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1187

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1188 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1229

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1230 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1289

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1349

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1350 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1408

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1409 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1468

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1469 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1528

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1529 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1588

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1589 GLEIKLCMLAK 1599



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 403 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 461

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 462 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 517

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 518 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 572

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 573 QPIFLTPCMRDL 584


>gi|62088406|dbj|BAD92650.1| DNA (cytosine-5-)-methyltransferase 1 variant [Homo sapiens]
          Length = 1606

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/914 (35%), Positives = 481/914 (52%), Gaps = 139/914 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 718  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 777

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 778  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 837

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 838  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 885

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 886  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 945

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 946  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1005

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1006 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1065

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1066 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1121

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1122 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1174

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1175 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1216

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1217 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1276

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1277 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1336

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1337 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1395

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1396 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1455

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1456 SGALRGVCSCVEGGSSGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1515

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA
Sbjct: 1516 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLA 1575

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K  + +K
Sbjct: 1576 KAIGLEIKLCMLAK 1589



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 390 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 448

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 449 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 504

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 505 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 559

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 560 QPIFLTPCMRDL 571


>gi|383416291|gb|AFH31359.1| DNA (cytosine-5)-methyltransferase 1 isoform b [Macaca mulatta]
          Length = 1619

 Score =  541 bits (1394), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/914 (35%), Positives = 481/914 (52%), Gaps = 139/914 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 731  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSINGQ 790

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V  +S    W  +   D
Sbjct: 791  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKSPSENWAMEGGMD 850

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 851  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 898

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 899  LAEMRQKEIPRVREQLEALDSRVLYYSATKNGIPYRVGDGVYLPPEAFTFNIKLSSPVKR 958

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 959  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1018

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1019 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1078

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1079 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEMEI 1134

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1135 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1187

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1188 TEDCNILLKLVM--------------AGETPTSRGQR----LPQKGDVEMLCGGPPCQGF 1229

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1230 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1289

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1349

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1350 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1408

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1409 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1468

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1469 SGALRGVCSCVEGGASGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1528

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA
Sbjct: 1529 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLA 1588

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K  + +K
Sbjct: 1589 KAIGLEIKLCMLAK 1602



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 403 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 461

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 462 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 517

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 518 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 572

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 573 QPIFLTPCMRDL 584


>gi|410226628|gb|JAA10533.1| DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
          Length = 1635

 Score =  541 bits (1394), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/914 (35%), Positives = 481/914 (52%), Gaps = 139/914 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 747  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 806

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 807  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 866

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 867  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 914

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 915  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 974

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 975  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1034

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1035 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1094

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1095 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1150

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1151 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1203

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1204 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1245

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1246 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1305

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1306 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1365

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1366 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1424

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1425 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1484

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1485 SGALRGVCSCVEGGASGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1544

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA
Sbjct: 1545 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLA 1604

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K  + +K
Sbjct: 1605 KAIGLEIKLCMLAK 1618



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 419 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 477

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 478 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 533

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 534 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 588

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 589 QPIFLTPCMRDL 600


>gi|168277642|dbj|BAG10799.1| DNA (cytosine-5)-methyltransferase 1 [synthetic construct]
          Length = 1498

 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/914 (35%), Positives = 481/914 (52%), Gaps = 139/914 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 610  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 669

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 670  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 729

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 730  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 777

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 778  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 837

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 838  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 897

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 898  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 957

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 958  GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 1013

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1014 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1066

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1067 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1108

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1109 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1168

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1169 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1228

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1229 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1287

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1288 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1347

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1348 SGALRGVCSCVEGGSSGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1407

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA
Sbjct: 1408 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLA 1467

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K  + +K
Sbjct: 1468 KAIGLEIKLCMLAK 1481



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 282 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 340

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 341 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 396

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 397 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 451

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 452 QPIFLTPCMRDL 463


>gi|156739999|gb|ABU93584.1| DNA cytosine 5-methyltransferase 1 [Ovis aries]
          Length = 1572

 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 323/910 (35%), Positives = 477/910 (52%), Gaps = 135/910 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 698  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 757

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 758  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWALEGGVD 817

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 818  PEALMSQDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCVSCAR 865

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 866  LAEMRQKEIPRVMEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 925

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY V ++ EI   K+   R      +++V
Sbjct: 926  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRVGRIKEIFCSKKSNGRPNETDIKIRV 985

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 986  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECLQDFSAG 1045

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1046 GPDRF---YFLEAYNAKSK-SFEDPPNHARSHGNKGKGKGKGKNRTKSQTCEPSELETEI 1101

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+ +GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1102 KLP-------KLRTLDVSSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1154

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1155 TEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1196

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1197 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1256

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1257 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1316

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1317 FVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLRGSQYQPI 1375

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1376 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNGCSS 1435

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1436 AGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1495

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1496 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1555

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1556 LEIKRCMLAK 1565



 Score = 48.9 bits (115), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 369 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 427

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 428 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 483

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 484 LQSNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 542

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 543 IFLSPCMRDL 552


>gi|168805279|gb|ACA28713.1| DNA methyltransferase b [Bos taurus]
          Length = 1348

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 323/910 (35%), Positives = 478/910 (52%), Gaps = 135/910 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 447  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 506

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 507  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWAMEGGVD 566

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 567  PEALMSEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 614

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 615  LAEMRQKEIPRVVEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 674

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      +++V
Sbjct: 675  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRV 734

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 735  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAG 794

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 795  GPDRF---YFLEAYNAKSK-SFEDPPNHARSTGNKGKGKGKGKNRTKSQTCEPSELETEI 850

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 851  KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 903

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 904  TEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 945

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 946  SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1005

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1006 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1065

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1066 FVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLRGSQYQPI 1124

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1125 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNGCSS 1184

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1185 SGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1244

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1245 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1304

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1305 LEIKRCMLAK 1314



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 118 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 176

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 177 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 232

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 233 LQSNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 291

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 292 IFLSPCMRDL 301


>gi|355755438|gb|EHH59185.1| DNA (cytosine-5)-methyltransferase 1 [Macaca fascicularis]
          Length = 1541

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 656  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSINGQ 715

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V  +S    W  +   D
Sbjct: 716  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKSPSENWAMEGGMD 775

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL---GVGSCHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 776  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 823

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 824  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGIPYRVGDGVYLPPEAFTFNIKLSSPVKR 883

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 884  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 943

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 944  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1003

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 1004 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEMEI 1059

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1060 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1112

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1113 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1154

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1155 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1214

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1215 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1274

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1275 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 1333

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1334 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1393

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1394 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1453

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1454 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1513

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1514 GLEIKLCMLAK 1524



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 328 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 386

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 387 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 442

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 443 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 497

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 498 QPIFLTPCMRDL 509


>gi|395851079|ref|XP_003798094.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Otolemur garnettii]
          Length = 1620

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/916 (35%), Positives = 482/916 (52%), Gaps = 146/916 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 735  ISWIGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 794

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 795  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIYSKVKVIYKAPSENWAMEGGMD 854

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF-----ILPVDSMGLGVGSCHAC 910
              +    D  +             Y   L++ +  A F     I P +        C +C
Sbjct: 855  PESLLPEDDGKT------------YFYQLWYDQDYARFESPPQIQPTEDNKYKF--CASC 900

Query: 911  GTKESEKEKETFKVHSKTSFVYGTAEYF----------VHDYVYISPHHFTWDKAEGETF 960
                  ++KE  +V  +   + G   Y+          V D VY+ P  FT++       
Sbjct: 901  ARLAEMRQKEIPRVLEQLDDLDGRVLYYSATKNGIQYRVGDGVYLLPEAFTFNIKLSSPV 960

Query: 961  KAGRNVGL------------------------KPYVVCQLLEIIVPKE----PKRAEVKS 992
            K  R   +                        +PY + ++ EI  PK+    P  A++K 
Sbjct: 961  KRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGKPNEADIK- 1019

Query: 993  TQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC-- 1048
              +++ +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C  
Sbjct: 1020 --IRLNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCAVEYGEDLPQCVQ 1077

Query: 1049 ----NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
                  P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E
Sbjct: 1078 DYSTGGPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQTCEPSE 1133

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             E E++          L TLD+F+GCGGLSEG  Q+G+S T WAIE  +PA +AF+LN+P
Sbjct: 1134 PETEIKLP-------KLRTLDVFSGCGGLSEGFHQAGVSETLWAIEMWDPAAQAFRLNNP 1186

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             S +   +CNV+L+ VM              A E   S  +     LP  G V+ + GGP
Sbjct: 1187 GSTVFTEDCNVLLKLVM--------------AGEATNSRGQR----LPQKGDVEMLCGGP 1228

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL
Sbjct: 1229 PCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTL 1288

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIM 1342
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L ++
Sbjct: 1289 CCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVV 1348

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
            + D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+
Sbjct: 1349 VDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEILYNGEPQSWFQRQLRGS 1407

Query: 1403 --MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG-------------- 1446
                +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G              
Sbjct: 1408 QYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDRR 1467

Query: 1447 ---------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                                       Q   LIPWCLP+T  RHN W GL+GRL+W+G F
Sbjct: 1468 NGRSSSGALRGVCSCVEAGKACDPVARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFF 1527

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
             T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP 
Sbjct: 1528 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 1587

Query: 1540 LAFALGRKLKEAVESK 1555
            LA A+G ++K  + +K
Sbjct: 1588 LAKAIGLEIKLCMLAK 1603



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +L  SG   P+ +  D   E GV  +  G I
Sbjct: 408 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELSFSGSAKPIYDD-DPSLEGGVNGKNLGPI 466

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W ++G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 467 NEWWLTGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVELLQ 522

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N   + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++    
Sbjct: 523 SNPHSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVGQVESYDEAGDSDEPPIF 581

Query: 287 ELPVLVAL 294
             P + AL
Sbjct: 582 LSPCMRAL 589


>gi|57164173|ref|NP_001009473.1| DNA (cytosine-5)-methyltransferase 1 [Ovis aries]
 gi|29536011|gb|AAO39704.1| DNA (cytosine-5)-methyltransferase 1 [Ovis aries]
          Length = 1611

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 323/910 (35%), Positives = 476/910 (52%), Gaps = 135/910 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 728  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 788  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWALEGGVD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 848  PEALMSQDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCVSCAR 895

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVMEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY V ++ EI   K+   R      +++V
Sbjct: 956  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRVGRIKEIFCSKKSNGRPNETDIKIRV 1015

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1016 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECLQDFSAG 1075

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1076 GPDRF---YFLEAYNAKSK-SFEDPPNHARSHGNKGKGKGKGKNRTKSQTCEPSELETEI 1131

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1132 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1184

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
               CNV+L+ VM                E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1185 TEYCNVLLKLVM--------------GGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1226

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1227 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1286

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1287 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1346

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1347 FVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLRGSQYQPI 1405

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1406 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNGCSS 1465

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1466 AGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1525

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1526 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1585

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1586 LEIKRCMLAK 1595



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 12/191 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 399 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 457

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G + ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 458 PINEWWIAGFDGGENALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 513

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRG-GVSIKDFVISQGEFIFNQLIGLDETSKKNDQ 283
              N D + ++L+  +  ++    C        +D ++   +F+  Q+   D     ++Q
Sbjct: 514 LQSNPDSTYEDLINKIETTV--PPCMLNLNRFTEDSLLRHAQFVVEQVESYDRAGDSDEQ 571

Query: 284 KFAELPVLVAL 294
                P +  L
Sbjct: 572 PIFLSPCMRDL 582


>gi|281337410|gb|EFB12994.1| hypothetical protein PANDA_010327 [Ailuropoda melanoleuca]
          Length = 1576

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/907 (35%), Positives = 481/907 (53%), Gaps = 128/907 (14%)

Query: 739  ITWEGECVRKSGLALY-KKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G   Y KK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 691  ISWVGDAVKTDGKKNYFKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 750

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 751  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWALEGGMD 810

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   +   AE+  K    T +Y   L++ +  A F  P  +          C +C  
Sbjct: 811  ------PEAVMAEDDGK----TYFY--QLWYDQDYARFESPPKTQPTEENKYKFCVSCAR 858

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     T  +Y +A     +Y V D VY+ P  FT++       K 
Sbjct: 859  LAEMRQKEIPRVLEQIEDLDTRVLYSSATKNGVQYRVGDGVYLLPEAFTFNIKLSSPVKR 918

Query: 963  GRNVGL------------------------KPYVVCQLLEII-VPKEPKRAEVKSTQVKV 997
             R   +                        +PY + ++ EI  + K   R      ++++
Sbjct: 919  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCIKKSNGRPNETDIKIRI 978

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAI 1053
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C  +  A 
Sbjct: 979  NKFYRPENTHKSTPASYHADINLLYWSDEEVVVDFKAVQGRCTVEYGEDLPGCLQDFSAG 1038

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
                F+    ++    S +  P H +   + G    +   R K   C   E E E++   
Sbjct: 1039 GPDRFYFLEAYNAKNKSFEDPPNHARSPGNKGKGKGKGKGRAKSQTCEPSEPEAEIKLP- 1097

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
                   L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S +   +C
Sbjct: 1098 ------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVFTEDC 1151

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            NV+L+ VM   G+A +                     LP  G V+ + GGPPCQGFSGMN
Sbjct: 1152 NVLLKLVM--AGEATNPRG----------------QKLPQKGDVEMLCGGPPCQGFSGMN 1193

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ MGYQ
Sbjct: 1194 RFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQ 1253

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSA 1351
              FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D    S 
Sbjct: 1254 CTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSN 1313

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDH 1409
            +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG+    +L DH
Sbjct: 1314 ITRLSSG-PFRTITVRDTMSDLPEVRNGASALEILYNGEPQSWFQRQLRGSQYQPILRDH 1372

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------------- 1446
            I K+M+ L   R + IP  PG+DW DLP+ +V+LS G                       
Sbjct: 1373 ICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDKKNGCSSTGAL 1432

Query: 1447 ------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
                              Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+P
Sbjct: 1433 RGVCSCVEAGKACDSAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEP 1492

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++
Sbjct: 1493 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEI 1552

Query: 1549 KEAVESK 1555
            K  + +K
Sbjct: 1553 KRCMLAK 1559



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 364 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGYAKPIYDD-DPSLEGGVNGKNLGPI 422

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +   
Sbjct: 423 NEWWITGFDGGEKALIGFSTSFAEYILMDPNPEYAPLFSVMQEK----IYISKIVVEFLQ 478

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++Q   
Sbjct: 479 SNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 537

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 538 LTPCMRDL 545


>gi|301772046|ref|XP_002921451.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Ailuropoda melanoleuca]
          Length = 1676

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 324/907 (35%), Positives = 481/907 (53%), Gaps = 128/907 (14%)

Query: 739  ITWEGECVRKSGLALY-KKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G   Y KK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 791  ISWVGDAVKTDGKKNYFKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 850

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 851  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWALEGGMD 910

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   +   AE+  K    T +Y   L++ +  A F  P  +          C +C  
Sbjct: 911  ------PEAVMAEDDGK----TYFY--QLWYDQDYARFESPPKTQPTEENKYKFCVSCAR 958

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     T  +Y +A     +Y V D VY+ P  FT++       K 
Sbjct: 959  LAEMRQKEIPRVLEQIEDLDTRVLYSSATKNGVQYRVGDGVYLLPEAFTFNIKLSSPVKR 1018

Query: 963  GRNVGL------------------------KPYVVCQLLEII-VPKEPKRAEVKSTQVKV 997
             R   +                        +PY + ++ EI  + K   R      ++++
Sbjct: 1019 PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCIKKSNGRPNETDIKIRI 1078

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAI 1053
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C  +  A 
Sbjct: 1079 NKFYRPENTHKSTPASYHADINLLYWSDEEVVVDFKAVQGRCTVEYGEDLPGCLQDFSAG 1138

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
                F+    ++    S +  P H +   + G    +   R K   C   E E E++   
Sbjct: 1139 GPDRFYFLEAYNAKNKSFEDPPNHARSPGNKGKGKGKGKGRAKSQTCEPSEPEAEIKLP- 1197

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
                   L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S +   +C
Sbjct: 1198 ------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVFTEDC 1251

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            NV+L+ VM   G+A +                     LP  G V+ + GGPPCQGFSGMN
Sbjct: 1252 NVLLKLVM--AGEATNPRG----------------QKLPQKGDVEMLCGGPPCQGFSGMN 1293

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ MGYQ
Sbjct: 1294 RFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQ 1353

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSA 1351
              FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D    S 
Sbjct: 1354 CTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSN 1413

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDH 1409
            +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG+    +L DH
Sbjct: 1414 ITRLSSG-PFRTITVRDTMSDLPEVRNGASALEILYNGEPQSWFQRQLRGSQYQPILRDH 1472

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------------- 1446
            I K+M+ L   R + IP  PG+DW DLP+ +V+LS G                       
Sbjct: 1473 ICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDKKNGCSSTGAL 1532

Query: 1447 ------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
                              Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+P
Sbjct: 1533 RGVCSCVEAGKACDSAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEP 1592

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++
Sbjct: 1593 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEI 1652

Query: 1549 KEAVESK 1555
            K  + +K
Sbjct: 1653 KRCMLAK 1659



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 464 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGYAKPIYDD-DPSLEGGVNGKNLGPI 522

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +   
Sbjct: 523 NEWWITGFDGGEKALIGFSTSFAEYILMDPNPEYAPLFSVMQEK----IYISKIVVEFLQ 578

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++Q   
Sbjct: 579 SNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 637

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 638 LTPCMRDL 645


>gi|338727207|ref|XP_001916472.2| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Equus caballus]
          Length = 1619

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 326/911 (35%), Positives = 483/911 (53%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            ITW G+ V+  G  + YK+  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 734  ITWVGDAVKTDGKKSFYKQVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 793

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 794  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWALEGGMD 853

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   +   AE+  K    T +Y   L++ +  A F  P  +          C +C  
Sbjct: 854  ------PEALMAEDDGK----TYFY--QLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 901

Query: 913  KESEKEKETFKVHSKTS-----FVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +        +Y +A     +Y V D VY+ P  FT++       K 
Sbjct: 902  LAEMRQKEIPRVLEQLEDLDGRVLYSSATKDGVQYRVGDGVYLLPEAFTFNIKLSSPVKR 961

Query: 963  GRNVGL------------------------KPYVVCQLLEII-VPKEPKRAEVKSTQVKV 997
             R   +                        +PY + ++ EI  + K   R      ++++
Sbjct: 962  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCIKKSNGRPNETDIKIRL 1021

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S    Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1022 NKFYRPENTHKSTPATYHADINLLYWSDEEAVVDFKAVQGRCTVEYSEDLPECLQAFSAG 1081

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E + E+
Sbjct: 1082 GPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKAKSQVCEPSEPKAEI 1137

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1138 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1190

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1191 TEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1232

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1233 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1292

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1293 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDRK 1352

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1353 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGSQYQPI 1411

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1412 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDRKNGRSS 1471

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1472 TGALRGVCSCVEAGKACDSAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1531

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1532 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1591

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1592 GLEIKRCMLAK 1602



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 407 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGSAKPIYDD-DPSLEGGVNGKDLGPI 465

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +   
Sbjct: 466 NEWWITGFDGGEKALIGFSTSFAEYILMDPNPEYAPMFSVMQEK----IYISKIVVEFLQ 521

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++Q   
Sbjct: 522 SNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 580

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 581 LTPCMRDL 588


>gi|395750441|ref|XP_002828696.2| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 1
            [Pongo abelii]
          Length = 1602

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 325/914 (35%), Positives = 485/914 (53%), Gaps = 143/914 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 718  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 777

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W       
Sbjct: 778  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWA------ 831

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
            +   D       ++ K     T +Y   L++ +  A F  P  +          C +C  
Sbjct: 832  MGGMDPESLLEGDDGK-----TYFY--QLWYDQDYARFESPPKTQPNKDNKFKFCVSCAR 884

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 885  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 944

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKE----PKRAEVKSTQ 994
             R   +                        +PY + ++ EI  PK+    P + ++K   
Sbjct: 945  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGTPNQTDIK--- 1001

Query: 995  VKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC---- 1048
            ++V +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C    
Sbjct: 1002 IRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVY 1061

Query: 1049 --NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDE 1106
                P  F   +F E  +  +K S +  P H +   + G    +   + K   C   E E
Sbjct: 1062 SMGGPDRF---YFLEAYNAKTK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPE 1117

Query: 1107 LEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166
            +E++          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S
Sbjct: 1118 IEIKLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGS 1170

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPC 1226
             +   +CN++L+ VM              A E   S  +     LP  G V+ + GGPPC
Sbjct: 1171 TVFTEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPC 1212

Query: 1227 QGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            QGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  
Sbjct: 1213 QGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRC 1272

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLS 1344
            L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ 
Sbjct: 1273 LVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVD 1332

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN-- 1402
            D    S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG   
Sbjct: 1333 DKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQY 1391

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------- 1446
              +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                
Sbjct: 1392 QPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNG 1451

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1452 RSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1511

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA
Sbjct: 1512 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLA 1571

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K  + +K
Sbjct: 1572 KAIGLEIKLCMLAK 1585



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 18/193 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEM----LEIDDLFISGLILPLQESSDREKEKGVRCEGFGR 166
           P  +L  F ++ ++G   P++      EI +LF   +        D   E GV  +  G 
Sbjct: 383 PQHKLTCFSVYCKHGHLCPIDTGPHREEISELFFFWVQPKPIYDDDPSLEGGVNGKNLGP 442

Query: 167 IESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTS 225
           I  W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +  
Sbjct: 443 INEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFL 498

Query: 226 GGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKN 281
             NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    +
Sbjct: 499 QSNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSD 553

Query: 282 DQKFAELPVLVAL 294
           +Q     P +  L
Sbjct: 554 EQPIFLTPCMRDL 566


>gi|410950440|ref|XP_003981913.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Felis catus]
          Length = 1610

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 325/911 (35%), Positives = 479/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGLALY-KKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G   Y KK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 725  ISWIGEAVKTDGKKSYFKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 784

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 785  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWAMEGGMD 844

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 845  PEPLMAEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCVSCAR 892

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +YG+A     +Y V D VY+ P  FT++       K 
Sbjct: 893  LAEMRQKEIPRVMEQLEDLDSRVLYGSATKNGIQYRVGDGVYLLPEAFTFNIKLSSPVKR 952

Query: 963  GRNVGL------------------------KPYVVCQLLEII-VPKEPKRAEVKSTQVKV 997
             R   +                        +PY + ++ EI  + K   R      ++++
Sbjct: 953  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCIKKSNGRPNETDIKIRI 1012

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP------ACN 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P      +  
Sbjct: 1013 NKFYRPENTHKSTPASYHADINLLYWSDEEVVVDFKAVQGRCTVEYGEDLPGGLQDFSAG 1072

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  +K S +  P H +   + G    +   + K   C   E E E+
Sbjct: 1073 GPDRF---YFLEAYNAKNK-SFEDPPNHARSPGNKGKGKGKGKGKAKSQTCEPSEPETEI 1128

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
                   Q   L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1129 -------QLPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1181

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1182 TEDCNVLLKLVM--------------AGEATNSRGQK----LPQKGDVEMLCGGPPCQGF 1223

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1224 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1283

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1284 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1343

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1344 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEILYNGEPQSWFQRQLRGSQYQPI 1402

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1403 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDKKNGCSS 1462

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1463 TGALRGVCSCVEAGKACDSAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1522

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1523 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1582

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 1583 GLEIKRCMLAK 1593



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 398 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 456

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +   
Sbjct: 457 NEWWITGFDGGEKALIGFSTSFAEYILMDPNPEYAPLFSVMQEK----IYISKIVVEFLQ 512

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++Q   
Sbjct: 513 SNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 571

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 572 LTPCMRDL 579


>gi|343197726|pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
            Sinefungin
          Length = 1002

 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 133  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 192

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 193  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 252

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL---GVGSCHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 253  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 300

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 301  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 360

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 361  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 420

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 421  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 480

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 481  GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 536

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 537  KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 589

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 590  TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 631

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 632  SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 691

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 692  MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 751

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 752  FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 810

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 811  LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 870

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 871  SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 930

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 931  NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 990

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 991  GLEIKLCMLAK 1001


>gi|403296174|ref|XP_003938993.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Saimiri boliviensis
            boliviensis]
          Length = 1683

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 325/911 (35%), Positives = 478/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E     +
Sbjct: 799  ISWVGEAVKTDGKKSFYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDNSNGQ 858

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 859  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVRVIYKAPSENWAMEGGMD 918

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                         E   +G   + Y   L++ +  A F  P  +          C +C  
Sbjct: 919  ------------PESLLEGNDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 966

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 967  LAEMRQKEIPRVLEQLEDLDSRVLYFSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 1026

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      ++++
Sbjct: 1027 PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCLKKSNGRPNETDIKIRL 1086

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1087 NKFYRPENTHKSTLASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQEYSMG 1146

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E E+
Sbjct: 1147 GPDRF---YFLEAYNARSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPETEI 1202

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1203 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1255

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1256 TEDCNVLLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1297

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1298 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 1357

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1358 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 1417

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 1418 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGTQYQPI 1476

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1477 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 1536

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1537 SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1596

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 1597 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 1656

Query: 1545 GRKLKEAVESK 1555
            G ++K  V +K
Sbjct: 1657 GLEIKLCVLAK 1667



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 139/324 (42%), Gaps = 53/324 (16%)

Query: 8   DSKESNDQKATDSSEMKNKKRKPKSEVPETKD-STSGQKEKMKKLSQDSEEPRKRP--KR 64
           D +E +++K     +    KR+P+ + PE  +   S +K++ +K  +  +   K P  K+
Sbjct: 345 DGEEKDEKKHRSQPKDLAAKRRPEEKEPEKANPQISDEKDEDEKEEKRRKTTPKEPTEKK 404

Query: 65  MAACTDFKEKSVRISEKSYLVEAKK-DQYADDEIVAVGLTARQDGDRPNRRLNDFI-LHD 122
           MA     + K+V +S K++  +  +  QY DD  +  G       D P    N+ + + D
Sbjct: 405 MA-----RTKTV-VSSKTHPPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFD 458

Query: 123 EN--------GLPQ----------------PLEMLEID---DLFISGLILPLQESSDREK 155
            N         LPQ                P++   I+   +LF SG   P+ +  D   
Sbjct: 459 ANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYD-DDPSL 517

Query: 156 EKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
           E GV  +  G I  W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    
Sbjct: 518 EGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK---- 573

Query: 215 IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQ 270
           I + K + +    NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q
Sbjct: 574 IYISKIVVEFLQSNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQ 628

Query: 271 LIGLDETSKKNDQKFAELPVLVAL 294
           +   DE    ++Q     P +  L
Sbjct: 629 VESYDEAGDSDEQPIFLTPCMRDL 652



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 119/287 (41%), Gaps = 38/287 (13%)

Query: 406 AYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEG 465
           A +S ++S   + LP+  L  +S+Y     L  ++   ++  ++I++   GS K I D  
Sbjct: 459 ANESGFES--YEALPQHKLTCFSVYCKHGHLCPIDTGLIE--KNIELFFSGSAKPIYD-- 512

Query: 466 SGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLG 523
                  D      GV+G          L  I EW I    G     I   T  A Y L 
Sbjct: 513 -------DDPSLEGGVNGKN--------LGPINEWWITGFDGGEKALIGFSTSFAEYILM 557

Query: 524 KPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDP 583
            PS +YAP +   L   ++ IS I +   Q+  S  ++ D+I ++          ++   
Sbjct: 558 DPSPEYAPIFG--LMQEKIYISKIVVEFLQSN-SDSTYEDLINKIETTVPPSGLNLNR-- 612

Query: 584 AAVERYVVVHGQIVLQLFAEYPD--EQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSE 641
              E  ++ H Q V++    Y +  +  ++  F+   M+ + +        ++ + ++  
Sbjct: 613 -FTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQT 671

Query: 642 INLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEE 688
           I  + R          R   +ATTT+L+ +I+  ++S    +D +E+
Sbjct: 672 IRHSTREK-------DRGPTKATTTKLVYQIFDTFFSEQIEKDDRED 711


>gi|315583650|pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
            Dna
          Length = 956

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 324/911 (35%), Positives = 481/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 87   ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 146

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 147  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 206

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL---GVGSCHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 207  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCAR 254

Query: 913  KESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 255  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKR 314

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 315  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 374

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 375  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 434

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E+E+
Sbjct: 435  GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 490

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 491  KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 543

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 544  TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 585

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ 
Sbjct: 586  SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVR 645

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 646  MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK 705

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 706  FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPI 764

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 765  LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSS 824

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 825  SGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 884

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 885  NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 944

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 945  GLEIKLCMLAK 955


>gi|345786497|ref|XP_533919.3| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Canis lupus
            familiaris]
          Length = 1611

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 320/907 (35%), Positives = 474/907 (52%), Gaps = 128/907 (14%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G    YKK  +  E + +G  V V  D+  +   +  V  ++E     +
Sbjct: 728  ISWVGDAVKTDGKKDYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDGSNGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 788  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWALEGGMD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 848  PEALITEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCVSCAR 895

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +        +Y +A     +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVLEQLEDLDNRVLYSSATKNGIQYRVGDGVYLLPEAFTFNIKLSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      ++++
Sbjct: 956  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCTKKSNGRPNETDIKIRI 1015

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAI 1053
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C  +  A 
Sbjct: 1016 NKFYRPENTHKSTPASYHADINLLYWSDEEVVVDFKAVQGRCTVEYGEDLPGCLQDFSAG 1075

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
                F+    ++    S +  P H +   + G    +   + K   C   E E E++   
Sbjct: 1076 GPDRFYFLEAYNAKNKSFEDPPNHARSPGNKGKGKGKGKGKAKSQTCEPSEPETEIKLP- 1134

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
                   L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S +   +C
Sbjct: 1135 ------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVFTEDC 1188

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            NV+L+ VM              A E   S  +     LP  G V+ + GGPPCQGFSGMN
Sbjct: 1189 NVLLKLVM--------------AGEATNSRGQK----LPQKGDVEMLCGGPPCQGFSGMN 1230

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ MGYQ
Sbjct: 1231 RFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQ 1290

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSA 1351
              FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D    S 
Sbjct: 1291 CTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSN 1350

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDH 1409
            +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG+    +L DH
Sbjct: 1351 ITRLSSG-PFRTITVRDTMSDLPEVRNGASALEILYNGEPQSWFQRQLRGSQYQPILRDH 1409

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------------- 1446
            I K+M+ L   R + IP  PG+DW DLP+ +V+LS G                       
Sbjct: 1410 ICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDKKNGCSSTGAL 1469

Query: 1447 ------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
                              Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+P
Sbjct: 1470 RGVCSCVEAGKACDSAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEP 1529

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++
Sbjct: 1530 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEI 1589

Query: 1549 KEAVESK 1555
            K  + +K
Sbjct: 1590 KRCMLAK 1596



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 401 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGYAKPIYDD-DPSLEGGVNGKNLGPI 459

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +   
Sbjct: 460 NEWWITGFDGGEKALIGFSTSFAEYILMDPNPEYAPLFSVMQEK----IYISKIVVEFLQ 515

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++Q   
Sbjct: 516 SNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 574

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 575 LTPCMRDL 582


>gi|31074161|gb|AAP20551.1| DNA cytosine-5 methyltransferase 1 [Bos taurus]
          Length = 1611

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 318/910 (34%), Positives = 476/910 (52%), Gaps = 135/910 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 728  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 788  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWAMEGGVD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 848  PEALMSEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 895

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVVEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      +++V
Sbjct: 956  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRV 1015

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1016 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAG 1075

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1076 GPDRF---YFLEAYNAKSK-SFEDPPNHARSTGNKGKGKGKGKNRTKSQTCEPSELETEI 1131

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+ N+P S + 
Sbjct: 1132 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRFNNPGSTVF 1184

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+++ VM              A E+  S  + ++      G V+ + GGPPCQGF
Sbjct: 1185 TKDCNVLVKLVM--------------AGEVTNSRGQKLLQK----GDVEMLCGGPPCQGF 1226

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1227 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1286

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
             GYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1287 RGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1346

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1347 FVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNREPQSWFQRQLRGSQYQPI 1405

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1406 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNGCSS 1465

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1466 SGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1525

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1526 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1585

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1586 LEIKRCMLAK 1595



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 399 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 457

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 458 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 513

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 514 LQSNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 572

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 573 IFLSPCMRDL 582


>gi|260806879|ref|XP_002598311.1| hypothetical protein BRAFLDRAFT_204680 [Branchiostoma floridae]
 gi|229283583|gb|EEN54323.1| hypothetical protein BRAFLDRAFT_204680 [Branchiostoma floridae]
          Length = 1275

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 375/1288 (29%), Positives = 618/1288 (47%), Gaps = 205/1288 (15%)

Query: 404  LLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISD 463
            LL  D +Y +   D  P+  + ++S+Y+ ++ L + +   ++  +++++   G+ K I D
Sbjct: 40   LLEEDQEYGT--YDDRPQHKITNFSVYDKNTHLCAFDTGLIE--KNVELYFSGAVKPIYD 95

Query: 464  EGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYR 521
            E                   + D G     +  I EW      G     I   T  A Y 
Sbjct: 96   ENP-----------------SADGGVLAKNVGPINEWWTAGFDGGENALIGFTTAFAEYI 138

Query: 522  LGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISS 581
            + +PS+ YAP+ + + +   ++  +I  L      +   + D++ ++      Q   ++S
Sbjct: 139  VMQPSEAYAPFMDTMWEKIHMSKLVIEFLVNNQEAA---YEDLLNKIQTTVPPQSLRVTS 195

Query: 582  DPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSE 641
                 E  ++ H Q V+        EQ++       L    +E         +  ++ + 
Sbjct: 196  ---FSEESLLRHAQFVV--------EQVEN----FDLAGDADEAPLLTTPCMRALIKLAG 240

Query: 642  INLNPRASMGPVVVSKRKV-------MQATTTRLINRIWGEYYSNYSPED---------- 684
            + L  R +    +   RKV        +ATTT L+  I+  ++ +   +D          
Sbjct: 241  VTLGKRRAGRSGIKQPRKVKAKPMRQTKATTTNLVCSIFDTFFKDQIQDDKAGGPRRRRC 300

Query: 685  GKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQI-------------- 730
            G  E   +A+    V  +   +   T + K     R+   ++AVQ               
Sbjct: 301  GVCEVCQQADCGTCVACKDMTKFGGTGKSKQACVNRRCP-NMAVQDADDDDDIEDDLDKE 359

Query: 731  ---------------KSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEV 774
                           K  ++K +I+WEG+ +++ G    Y   ++  E +  G  V V  
Sbjct: 360  FSSTVGHKRTHFSPRKKVNSKVKISWEGKPIKEEGKKTFYSAVMLEEEKIETGDCVTVTS 419

Query: 775  DELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQD 834
            ++  +   I  V YM+E +GG  + H     RGS TVLG T++  EVFL ++C D+ +Q 
Sbjct: 420  EDPTKPLFIARVMYMWEDSGGDMMCHVGWFCRGSDTVLGETSDPLEVFLVDECEDILIQF 479

Query: 835  IKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFI 894
            +K    V +++        KD  +   V+   ++   K+     ++C+  Y P+   F  
Sbjct: 480  VKFKCKVILKTF------DKDWFSHGGVEDPDSDYPIKEDDGRTFFCQKWYDPDLARFED 533

Query: 895  LPVDSMGLGVGSCHACGTKESEKEKETFKVHSKT-------SFVY------GTAEYFVHD 941
             PV   G G   C  C   +  ++ E   V  +        + VY      G  EY + D
Sbjct: 534  PPVLEEGSGHKFCPLCLRLDHSRKSEIPIVGEQLDDTMGDDNKVYYSLCQKGGLEYKIGD 593

Query: 942  YVYISPHHFTWD-------------------------KAEGETFKAGRNVGLKPYVVCQL 976
             V++ P  F++                          +  G+  K       +P+ + ++
Sbjct: 594  DVFLLPDSFSFSVKVKNSTKKASKKDNYDEDLYPEYYRKRGDYVKGSNEECPEPFRIGRI 653

Query: 977  LEIIVPKEPKRA-EVKSTQVKVRRFFRPDDISAEKA--YCSDIREVYYSEETHLIFVEAI 1033
            + I   +           +++V +F+RP++    KA  + +D+  +Y+S+E  ++   ++
Sbjct: 654  ISIYCKRTVSGIINTHDVRLRVTKFYRPENTHKGKAGSHHTDLNMLYWSDEEAVVDFMSV 713

Query: 1034 AGKCEVRKKNDIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEA 1091
             GKC+V    D+     +  +   H F+    ++      ++ P   +   S G      
Sbjct: 714  QGKCQVVYGEDLDVSVEDWSSKGLHRFYFNEAYNTESKQFEEPPNKAR---SGGKKAKGK 770

Query: 1092 ASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEY 1151
               + KGK    E E + E+Q  +     L  LD+FAGCGGLSEG  Q+GI+ +KWA+E 
Sbjct: 771  GKGKGKGKGKSSEAESK-EQQPPSPAFTKLRMLDVFAGCGGLSEGFHQAGIADSKWAVEV 829

Query: 1152 EEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNL 1211
             EPA +A++LN+P+  +  ++CN++L+ VME                   +   +    L
Sbjct: 830  MEPAAQAYRLNNPDCTVFTDDCNILLKLVME------------------GATTNSTGQRL 871

Query: 1212 PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
            P  G V+ + GGPPCQGFSGMNRFN   +S+ +  ++++FLS+ D+++P++FLLENVRNF
Sbjct: 872  PQKGDVELLCGGPPCQGFSGMNRFNSRQYSQFKNSLVVSFLSYCDFYRPKFFLLENVRNF 931

Query: 1272 VSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPM 1331
            VSF      +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP 
Sbjct: 932  VSFKSSMVLKLTLRCLIRMGYQCTFGVLQAGNYGVAQTRRRAIILAAAPGEKLPMYPEPQ 991

Query: 1332 HVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN 1389
            HVF+  A +L +M+ D  +Y++       AP+R +T+RDT+ DLP++ NG S T + Y  
Sbjct: 992  HVFSPRACQLSVMV-DEKKYNSNTQWRQSAPYRTITIRDTMSDLPSIRNGHSATEISYDG 1050

Query: 1390 DPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG- 1446
            +P S+FQK IRGN    +L DHI K+MN L   R + +P  PG+DW DLP+  V+LS G 
Sbjct: 1051 EPRSYFQKIIRGNQYQPILRDHICKDMNALVEARMRHVPLAPGSDWRDLPNIVVRLSDGS 1110

Query: 1447 ---------------------------------------QVVDLIPWCLPNTAKRHNQWK 1467
                                                   Q   LIPWCLP+T  RHN W 
Sbjct: 1111 SSKLLQYTHEDKKNGTSSTGALRGVCSCAEGTACDQNDRQFNTLIPWCLPHTGNRHNHWA 1170

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F+GSI  
Sbjct: 1171 GLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFYGSILD 1230

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            KHRQ+GNAVPP +A A+GR++K+ +E K
Sbjct: 1231 KHRQVGNAVPPPMAAAIGREIKKCLEDK 1258



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           DRP  ++ +F ++D+N      +   I+   +L+ SG + P+ +  +   + GV  +  G
Sbjct: 52  DRPQHKITNFSVYDKNTHLCAFDTGLIEKNVELYFSGAVKPIYDE-NPSADGGVLAKNVG 110

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G + +I  +T  A+Y  ++P+ +Y  + +  +EK    I + K + + 
Sbjct: 111 PINEWWTAGFDGGENALIGFTTAFAEYIVMQPSEAYAPFMDTMWEK----IHMSKLVIEF 166

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N + + ++LL   +++    +  R     ++ ++   +F+  Q+   D     ++  
Sbjct: 167 LVNNQEAAYEDLL-NKIQTTVPPQSLRVTSFSEESLLRHAQFVVEQVENFDLAGDADEAP 225

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 226 LLTTPCMRAL 235


>gi|89243223|gb|ABD64771.1| Met1 [Volvox carteri f. nagariensis]
          Length = 2262

 Score =  535 bits (1377), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/637 (43%), Positives = 381/637 (59%), Gaps = 81/637 (12%)

Query: 995  VKVRRFFRPDDISAEKAYCSDIREVYY------SEETHLIF---VEAIAGKCEVRKKNDI 1045
            ++VRRF+RP+D+S + AY +   ++Y       +EET  +    VE + GKC+V      
Sbjct: 1601 IQVRRFYRPEDVSPDVAYRAGWWDLYMPPLSEGTEETGAMLELSVEEVYGKCDVVLGQPR 1660

Query: 1046 PACNAPAIFQHIFFCEHLHDPSKGSLKQLP-----------AHIKLRYSSGSLDSEAASR 1094
            P       FQ +      +DP +      P           A  + +Y  G+  +   +R
Sbjct: 1661 PKNPVLDTFQVV----GSYDPRQPGATPGPPPARLPTPPLPAPRQQQYGIGAKVNGGRAR 1716

Query: 1095 RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
             + G+  +GE+++E        +   L TLDIFAGCGGLSEG+ Q+G++ T+WAIEY+  
Sbjct: 1717 EEDGRG-DGEEDVEAAVHEDGGEGIQLDTLDIFAGCGGLSEGMHQAGVARTRWAIEYDSE 1775

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            A EA+KLN+P++ +  NNCNV+LRA M K G   DC++     E AA LD   + +LP P
Sbjct: 1776 AAEAYKLNNPDAKVFCNNCNVLLRAAMLKAGFEADCLADPTCVEAAAGLDAATLGDLPTP 1835

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G V  + GGPPCQG+SGMNRFN+  WS+VQ  M++A+LS+ D+++PRYFLLENVRNF  +
Sbjct: 1836 GSVALMMGGPPCQGYSGMNRFNKGLWSQVQNSMVMAYLSYCDFYRPRYFLLENVRNFAVY 1895

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
              G+ FRL + +LL++GYQVRFGIL AG FGV QSRKR FIWAA P + LPEWP P HVF
Sbjct: 1896 RGGEVFRLVVRTLLDLGYQVRFGILNAGHFGVPQSRKRTFIWAALPGEVLPEWPTPRHVF 1955

Query: 1335 AAPELKIMLSDNYQ---------------------------------------------- 1348
             A +L + +  N                                                
Sbjct: 1956 VATQLGVRMGGNAAAAAGGSCGGRKGGKGADGVKNGGRGGGAGGGGGGDIAGGSLAPPGG 2015

Query: 1349 -YSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAV-L 1406
             + A  +   GAP R +TVRD IGDLP + N A   ++ Y   P S FQ+ IRG+    L
Sbjct: 2016 FFFASGTPLPGAPLRTVTVRDAIGDLPPIDNDAKTDVLPYTAVPTSAFQRAIRGSAGSEL 2075

Query: 1407 TDHISKEMNELNLIRCQKIPKR-PGADWHDL-----PDEKVKLSTGQVVDLIPWCLPNTA 1460
             DH+ K+MNELNL RC+ IP+  PGADW  L      D   +   G+   L+P+CLPNTA
Sbjct: 2076 RDHMVKQMNELNLERCRCIPRGVPGADWRVLLKIVAEDPSREFFKGE--SLVPFCLPNTA 2133

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
             RHN W+GL+GRLD  G+FPT+ T+P PMGKVG  FHPDQDRI++VRECARSQGFPD ++
Sbjct: 2134 DRHNGWRGLYGRLDPYGHFPTATTEPNPMGKVGQVFHPDQDRIVSVRECARSQGFPDHFR 2193

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            F+G++  +HRQ+GNAVPP LA ALG++L+ A++  R+
Sbjct: 2194 FYGNVICRHRQVGNAVPPPLARALGQQLRLALKEGRA 2230



 Score =  183 bits (464), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 174/339 (51%), Gaps = 36/339 (10%)

Query: 376 YIKINEDEIANDYPFPVFYRPSEE--EFDELLAYDSDYDSCDI----DQLPRRMLHDWSL 429
           YI++ E+EIA+DYP P  Y+  E+  E+DEL+  D +   C      ++   R L  +++
Sbjct: 644 YIQVREEEIADDYPEPKEYKGEEDQDEWDELILEDPELLGCGFHGADERDSSRTLDHFAI 703

Query: 430 YNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEG------SGFCLDTDSSQCTSGVSG 483
           YNSD  L +LEL+PM    D +V IF SG +  D G      +   +D ++S C SG  G
Sbjct: 704 YNSDGFLTTLELVPMVAGLDANVNIFASGVLAEDTGDWGPAAAPEAVDAEASGCGSGAGG 763

Query: 484 AQDAGGFP-----IYLSSIKEWMIEFG-SSMIFISIRTDLAWYRLGKPSKQYAPWYEPVL 537
           +   G         +L+ I+EW +E G    + I+IRTD++WYRL +P K+YAPW+  V 
Sbjct: 764 SGSGGSASCGGQRYFLTQIREWFVECGPEGQVVINIRTDVSWYRLLRPQKRYAPWFRVVQ 823

Query: 538 KTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIV 597
           + A VA+ I+  L EQ R +RL F DVI RLS +     +YI +   AVER+VVVHGQ+V
Sbjct: 824 RAANVAVQILKWLDEQDRAARLYFPDVITRLSSLAPGHEAYIRAKVEAVERFVVVHGQVV 883

Query: 598 LQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKW------------------LVKKKKVQK 639
           L L   +  + I++C F   L  K+ ER H K                            
Sbjct: 884 LNLIGRHYKDAIRRCGFGKALRVKLGERRHRKLGKPSAAGGARRGGRGATAAAGGAGSGM 943

Query: 640 SEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
           +    NP          K + M AT+T  + RIW +Y++
Sbjct: 944 AAAKENPVKLRQVRKAKKPEPMPATSTAQVRRIWSDYFT 982



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 33/195 (16%)

Query: 113 RRLNDFILHDENGLPQPLEML---EIDDLFISGLILPLQESSD-REKEKG---------- 158
           R L  F L D  G P+PL+ L   +   LFI+G+I PL   S+ R K K           
Sbjct: 304 RSLLGFSLVDAEGRPEPLDRLGSLQGGGLFITGIIAPLGARSETRSKPKAKRQQQSHQPP 363

Query: 159 ---------------VRCEGFGRIESWSISGYEDGSPVIWLSTDIADYDCLKPASSYKKY 203
                           R    G +  W I       P + L T +A Y+C KPA+SY+K 
Sbjct: 364 LPPPAAAAAAASVSLCRVTRVGPVLGWRIKYSVAADPRLVLHTALAHYECAKPAASYRKL 423

Query: 204 YELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQ 263
            E    +      V++ L   +GG  D + +++   V R+   SK + G    +  +   
Sbjct: 424 LEPLLAQVELAGAVHQALCTETGGRLDSTFEDVCCRVARTKV-SKQYGGA---RYALKLN 479

Query: 264 GEFIFNQLIGLDETS 278
           G FI  QL  +  T+
Sbjct: 480 GRFILEQLAAMAGTA 494


>gi|440891547|gb|ELR45163.1| DNA (cytosine-5)-methyltransferase 1 [Bos grunniens mutus]
          Length = 1618

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 320/917 (34%), Positives = 475/917 (51%), Gaps = 142/917 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 728  ISWVGDAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 788  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWAMEGGVD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 848  PEALMSEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 895

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVVEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI   K+   R      +++V
Sbjct: 956  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRV 1015

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1016 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAG 1075

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1076 GPDRF---YFLEAYNAKSK-SFEDPPNHARSTGNKGKGKGKGKNRTKSQTCEPSELETEI 1131

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1132 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1184

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+ + VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1185 TEDCNVLRKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1226

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1227 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1286

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE---------LK 1340
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HV A            L+
Sbjct: 1287 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPVHVVAPRXXXXXXXXCPLR 1346

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++R
Sbjct: 1347 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLR 1405

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G            
Sbjct: 1406 GSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHD 1465

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1466 KKNGCSSSGALRGVCSCVEGKPCGPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1525

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP
Sbjct: 1526 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPP 1585

Query: 1539 TLAFALGRKLKEAVESK 1555
             LA A+G ++K  + +K
Sbjct: 1586 PLAKAIGLEIKRCMLAK 1602



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 399 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 457

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 458 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 513

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 514 LQSNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 572

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 573 IFLSPCMRDL 582


>gi|302836690|ref|XP_002949905.1| maintenance DNA methyltransferase [Volvox carteri f. nagariensis]
 gi|300264814|gb|EFJ49008.1| maintenance DNA methyltransferase [Volvox carteri f. nagariensis]
          Length = 2277

 Score =  531 bits (1368), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/644 (43%), Positives = 384/644 (59%), Gaps = 84/644 (13%)

Query: 995  VKVRRFFRPDDISAEKAYCSDIREVYY------SEETHLIF---VEAIAGKCEVRKKNDI 1045
            ++VRRF+RP+D+S + AY +   ++Y       +EET  +    VE + GKC+V      
Sbjct: 1605 IQVRRFYRPEDVSPDVAYRAGWWDLYMPPLSEGTEETGAMLELSVEEVYGKCDVVLGQPR 1664

Query: 1046 PACN----APAIFQHI---FFCEHLHDPSK-----------GSLKQLPAHIKLRYSSGSL 1087
            P       +  +F  +   F     +DP +                LPA  + +Y  G+ 
Sbjct: 1665 PKSRYLRVSVCVFDPVLDTFQVVGSYDPRQPGATPGPPPARLPTPPLPAPRQQQYGIGAK 1724

Query: 1088 DSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKW 1147
             +   +R + G+  +GE+++E        +   L TLDIFAGCGGLSEG+ Q+G++ T+W
Sbjct: 1725 VNGGRAREEDGRG-DGEEDVEAAVHEDGGEGIQLDTLDIFAGCGGLSEGMHQAGVARTRW 1783

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV 1207
            AIEY+  A EA+KLN+P++ +  NNCNV+LRA M K G   DC++     E AA LD   
Sbjct: 1784 AIEYDSEAAEAYKLNNPDAKVFCNNCNVLLRAAMLKAGFEADCLADPTCVEAAAGLDAAT 1843

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
            + +LP PG V  + GGPPCQG+SGMNRFN+  WS+VQ  M++A+LS+ D+++PRYFLLEN
Sbjct: 1844 LGDLPTPGSVALMMGGPPCQGYSGMNRFNKGLWSQVQNSMVMAYLSYCDFYRPRYFLLEN 1903

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            VRNF  +  G+ FRL + +LL++GYQVRFGIL AG FGV QSRKR FIWAA P + LPEW
Sbjct: 1904 VRNFAVYRGGEVFRLVVRTLLDLGYQVRFGILNAGHFGVPQSRKRTFIWAALPGEVLPEW 1963

Query: 1328 PEPMHVFAAPELKIMLSDNYQ--------------------------------------- 1348
            P P HVF A +L + +  N                                         
Sbjct: 1964 PTPRHVFVATQLGVRMGGNAAAAAGGSCGGRKGGKGADGVKNGGRGGGAGGGGGGDIAGG 2023

Query: 1349 --------YSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
                    + A  +   GAP R +TVRD IGDLP + N A   ++ Y   P S FQ+ IR
Sbjct: 2024 SLAPPGGFFFASGTPLPGAPLRTVTVRDAIGDLPPIDNDAKTDVLPYTAVPTSAFQRAIR 2083

Query: 1401 GNMAV-LTDHISKEMNELNLIRCQKIPKR-PGADWHDL-----PDEKVKLSTGQVVDLIP 1453
            G+    L DH+ K+MNELNL RC+ IP+  PGADW  L      D   +   G+   L+P
Sbjct: 2084 GSAGSELRDHMVKQMNELNLERCRCIPRGVPGADWRVLLKIVAEDPSREFFKGE--SLVP 2141

Query: 1454 WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQ 1513
            +CLPNTA RHN W+GL+GRLD  G+FPT+ T+P PMGKVG  FHPDQDRI++VRECARSQ
Sbjct: 2142 FCLPNTADRHNGWRGLYGRLDPYGHFPTATTEPNPMGKVGQVFHPDQDRIVSVRECARSQ 2201

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            GFPD ++F+G++  +HRQ+GNAVPP LA ALG++L+ A++  R+
Sbjct: 2202 GFPDHFRFYGNVICRHRQVGNAVPPPLARALGQQLRLALKEGRA 2245



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 175/352 (49%), Gaps = 49/352 (13%)

Query: 376 YIKINEDEIANDYPFPVFYRPSEE--EFDELLAYDSDYDSCDI----DQLPRRMLHDWSL 429
           YI++ E+EIA+DYP P  Y+  E+  E+DEL+  D +   C      ++   R L  +++
Sbjct: 616 YIQVREEEIADDYPEPKEYKGEEDQDEWDELILEDPELLGCGFHGADERDSSRTLDHFAI 675

Query: 430 YNSDSR-------------LISLELLPMKPCEDIDVTIFGSGKMISDEG------SGFCL 470
           YNSD R             L +LEL+PM    D +V IF SG +  D G      +   +
Sbjct: 676 YNSDVRGMARMGHVWGHGFLTTLELVPMVAGLDANVNIFASGVLAEDTGDWGPAAAPEAV 735

Query: 471 DTDSSQCTSGVSGAQDAGGFP-----IYLSSIKEWMIEFGS-SMIFISIRTDLAWYRLGK 524
           D ++S C SG  G+   G         +L+ I+EW +E G    + I+IRTD++WYRL +
Sbjct: 736 DAEASGCGSGAGGSGSGGSASCGGQRYFLTQIREWFVECGPEGQVVINIRTDVSWYRLLR 795

Query: 525 PSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPA 584
           P K+YAPW+  V + A VA+ I+  L EQ R +RL F DVI RLS +     +YI +   
Sbjct: 796 PQKRYAPWFRVVQRAANVAVQILKWLDEQDRAARLYFPDVITRLSSLAPGHEAYIRAKVE 855

Query: 585 AVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKW-------------- 630
           AVER+VVVHGQ+VL L   +  + I++C F   L  K+ ER H K               
Sbjct: 856 AVERFVVVHGQVVLNLIGRHYKDAIRRCGFGKALRVKLGERRHRKLGKPSAAGGARRGGR 915

Query: 631 ----LVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
                        +    NP          K + M AT+T  + RIW +Y++
Sbjct: 916 GATAAAGGAGSGMAAAKENPVKLRQVRKAKKPEPMPATSTAQVRRIWSDYFT 967



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 113 RRLNDFILHDENGLPQPLEML---EIDDLFISGLILPLQESSDREKEKGVRCEGFGRIES 169
           R L  F L D  G P+PL+ L   +   LFI+        S         R    G +  
Sbjct: 299 RSLLGFSLVDAEGRPEPLDRLGSLQGGGLFITAAAAAASVSL-------CRVTRVGPVLG 351

Query: 170 WSISGYEDGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNS 229
           W I       P + L T +A Y+C KPA+SY+K  E    +      V++ L   +GG  
Sbjct: 352 WRIKYSVAADPRLVLHTALAHYECAKPAASYRKLLEPLLAQVELAGAVHQALCTETGGRL 411

Query: 230 DCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETS 278
           D + +++   V R+   SK + G    +  +   G FI  QL  +  T+
Sbjct: 412 DSTFEDVCCRVARTKV-SKQYGGA---RYALKLNGRFILEQLAAMAGTA 456


>gi|355684539|gb|AER97432.1| DNA -methyltransferase 1 [Mustela putorius furo]
          Length = 939

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 323/911 (35%), Positives = 477/911 (52%), Gaps = 136/911 (14%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + +KK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 55   ISWVGDAVKTDGKKSYFKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 114

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  VV    S  W  +   D
Sbjct: 115  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVVYKAPSENWALEGGMD 174

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 175  PEAMIAEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEENKYKFCVSCAR 222

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     T  +Y +A     +Y V D VY+ P  FT++       K 
Sbjct: 223  LAEMRQKEIPRVLEQLEDLDTRVLYSSATKNGIQYRVGDGVYLLPEAFTFNIKLSSPVKR 282

Query: 963  GRNVGL------------------------KPYVVCQLLEII-VPKEPKRAEVKSTQVKV 997
             R   +                        +PY + ++ EI  + K   R      ++++
Sbjct: 283  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCIKKSNGRPNETDIKIRI 342

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP------ACN 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P      +  
Sbjct: 343  NKFYRPENTHKSTPASYHADINLLYWSDEEVVVDFKAVQGRCTVEYGEDLPGGLQDFSAG 402

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  +K S +  P H +   + G    +   R K   C   E E E+
Sbjct: 403  GPDRF---YFLEAYNAKNK-SFEDPPNHARSPGNKGKGKGKGKGRAKSQTCEPSEPETEI 458

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 459  KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 511

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 512  TEDCNVLLKLVM--------------AGEATNSRGQK----LPQKGDVEMLCGGPPCQGF 553

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 554  SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 613

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L  ++ D  
Sbjct: 614  MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEQLPLFPEPLHVFAPRACQLXXVVDDKK 673

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +
Sbjct: 674  FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASSLEILYNGEPQSWFQRQLRGAQYQPI 732

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 733  LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDKKNGCSS 792

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 793  TGALRGVCSCVEAGKACDSAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 852

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+
Sbjct: 853  NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAI 912

Query: 1545 GRKLKEAVESK 1555
            G ++K  + +K
Sbjct: 913  GLEIKRCMLAK 923


>gi|73853882|ref|NP_001027526.1| DNA (cytosine-5)-methyltransferase 1 [Sus scrofa]
 gi|66363554|gb|AAY45793.1| DNA methyltransferase 1 [Sus scrofa]
          Length = 1610

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 323/914 (35%), Positives = 475/914 (51%), Gaps = 136/914 (14%)

Query: 735  TKKEITWEGECVRKSGLALY-KKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+  G  +Y KK  +  E + +G  V V  D+  +   +  V  ++E +
Sbjct: 723  NKDRISWIGEAVKTDGKKIYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDS 782

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
               ++FH      G  TVLG T++  E+FL ++  D++L  I  K  V+    S  W  +
Sbjct: 783  SNGQMFHAHWFCAGIDTVLGATSDPLELFLVDEGEDMQLSYIHSKVKVIYKPPSENWALE 842

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D       D  +             Y   L++ +  A F  P  +          C 
Sbjct: 843  GGMDPEALMSKDDGKT------------YFYQLWYDQEYARFESPPKTQPTEDNKFKFCV 890

Query: 909  ACGTKESEKEKETFKVHSKTS-----FVYGTA-----EYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  +V  +        +Y +A     +Y V D VY+ P  FT++     
Sbjct: 891  SCARLAEMRQKEVPRVMEQLEDLDGRVLYSSATKNRIQYRVGDGVYLPPEAFTFNIKLSS 950

Query: 959  TFKAGR----NVGLKP--------------------YVVCQLLEIIVPKEPKRAEVKSTQ 994
              K  R    +  L P                    Y + ++ EI   K+    +   T 
Sbjct: 951  PVKGPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPDAYRIGRIKEIFCTKK-SNGKPNETD 1009

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC-- 1048
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++  +++ G+C V    D+P C  
Sbjct: 1010 IKIRLNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKSVQGRCTVEYGEDLPECLQ 1069

Query: 1049 ----NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
                  P  F   +F E  +  SK S +  P H +   + G    +  SR K   C   E
Sbjct: 1070 DFSAGGPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKSRTKSQTCEPSE 1125

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             E E++          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA  AF+LN+P
Sbjct: 1126 LETEIKLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAHAFRLNNP 1178

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             S +   +CNV+L+ VM              A E+  S  +     LP  G V+ + GGP
Sbjct: 1179 GSTVFTEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGP 1220

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL
Sbjct: 1221 PCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTL 1280

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+    A +L +++ 
Sbjct: 1281 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEQLPLFPEPLFAPRACQLSVVVD 1340

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN-- 1402
            D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+  
Sbjct: 1341 DKKFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASAQDISYNGEPQSWFQRQLRGSQY 1399

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------- 1446
              +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                
Sbjct: 1400 QPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLARKLRYNYHDKKNG 1459

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1460 CSSTGALRGVCSCVEVGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1519

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA
Sbjct: 1520 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLA 1579

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K  + +K
Sbjct: 1580 KAIGLEIKRCMLAK 1593



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 114 RLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFGRIESW 170
           +L  F ++ + G   P++  ++E D +LF SG   P+ E  D   E GV  +  G I  W
Sbjct: 403 KLTGFSVYCKRGHLCPIDTGLIEKDVELFFSGSAKPIYED-DPSLEGGVNGKNLGPINEW 461

Query: 171 SISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNS 229
            I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +    N 
Sbjct: 462 WITGFDGGEKALIGFSTSFAEYILMDPNPEYAPLFSVMQEK----IYISKIVVEFLQNNP 517

Query: 230 DCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELP 289
           D + ++L+  +  ++  S         +D ++   +F+  Q+   D+    ++Q     P
Sbjct: 518 DSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDQAGDSDEQPIFLTP 576

Query: 290 VLVAL 294
            +  L
Sbjct: 577 CMRDL 581


>gi|159481068|ref|XP_001698604.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158282344|gb|EDP08097.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 2204

 Score =  527 bits (1358), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/454 (55%), Positives = 318/454 (70%), Gaps = 20/454 (4%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L T+DIFAGCGGLSEG  Q+G++ ++WAIEY+  A +AFKLN+P + +  +NCNV+LRA 
Sbjct: 1726 LPTMDIFAGCGGLSEGFHQAGVAESRWAIEYDREAADAFKLNNPHTTVFCDNCNVLLRAA 1785

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M K G   DCVS   A E A  LD  V+ +LP PG V  + GGPPCQG+SGMNRFN   W
Sbjct: 1786 MVKAGLEADCVSDPAAVEAARRLDPQVVADLPAPGAVGLMMGGPPCQGYSGMNRFNTGMW 1845

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S+VQ  M++A+ S+ D+++PRYFLLENVRNFV++N G+ FRL + +LLE+GYQVRFG+L 
Sbjct: 1846 SQVQNSMVMAYTSYCDFYRPRYFLLENVRNFVAYNDGRVFRLVVRTLLELGYQVRFGVLN 1905

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML----SDNYQYSAVRSTA 1356
            AG FGVSQSRKR FIWAA P + LP+WP  +H F   +L + +     D   + A    A
Sbjct: 1906 AGCFGVSQSRKRTFIWAALPGELLPDWPAALHRFKQEQLGVRMRGVGGDGQFFHASGPPA 1965

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAV--------LTD 1408
             GAP R +TVRD IGDLP V NG++   + Y   PVS FQ+ IRG  A         + D
Sbjct: 1966 AGAPLRTVTVRDVIGDLPPVENGSTTDPLPYTGQPVSAFQRAIRGRAAAGGGGGNGEVRD 2025

Query: 1409 HISKEMNELNLIRCQKIPK-RPGADWHDL-----PDEKVKLSTGQVVDLIPWCLPNTAKR 1462
            H+ K MN LNL RC+ IPK  PGADW  L      D   +   GQ   L+PWCLPN+A R
Sbjct: 2026 HVVKAMNALNLERCRCIPKGDPGADWRVLLKLVAEDRSREFFNGQA--LVPWCLPNSADR 2083

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
            HN W+GL+ RLD +G+FPT+ TDP PMGKVG  FHPDQDRI++VRECARSQGFPD ++F+
Sbjct: 2084 HNGWRGLYSRLDPDGHFPTATTDPNPMGKVGQVFHPDQDRIVSVRECARSQGFPDHFRFY 2143

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            G++  +HRQ+GNAVPP LA ALG+KL EA++ +R
Sbjct: 2144 GNVVCRHRQVGNAVPPPLARALGQKLWEALKERR 2177



 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 154/351 (43%), Gaps = 52/351 (14%)

Query: 376 YIKINEDEIANDYPFPVFYRPSEEE----FDELLAYDSDYDSCDIDQLPRRMLHDWSLYN 431
           YI++ E+EIA+DYP P  Y   EEE     DE+L           D +P + L  ++ YN
Sbjct: 600 YIQVREEEIADDYPVPREYAADEEEGADECDEVLVGGGF--GLHPDDMPEQTLDRFAFYN 657

Query: 432 SDSRLISLELLPMKPCEDIDVTIFGSGKMISDEG------------------------SG 467
           +D  +  +E +P+     +D  IF SG + +D G                          
Sbjct: 658 ADGLMCPMETVPLMKDLQLDTGIFASGVVGADNGDWGTGGAAGGEGSGAAAGGAAAGGGA 717

Query: 468 FCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSK 527
                  +  +    G    GG  I+ + ++EW +E G   + I + TD   YRL +P +
Sbjct: 718 SGAGGSGAGGSGSGGGGGAGGGLRIFTTQVREWEVEAGHDHVSIIVITDYGKYRLLRPHE 777

Query: 528 QYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSD----- 582
            Y  W+  + +   VA  ++T L+E  R S++ F++V+ RL+ +     +++ ++     
Sbjct: 778 SYTGWHRVLERCFHVASKVVTWLEESDRASKVPFSEVVTRLAALPPADKAHVPTNRAFKG 837

Query: 583 --PAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHH------------- 627
              AAVER++VVHGQ++L +      + +  C F   L +K+ ER H             
Sbjct: 838 ARAAAVERFIVVHGQVLLTVLGLI-KKALSGCGFAKTLKEKLTERRHRVLAAAGGGKGGK 896

Query: 628 TKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
            K      +  +S +  NP  +       +   M ATTT  + R+W E ++
Sbjct: 897 GKAAAAAARALRSAVE-NPVRARVKKSGGRPVAMPATTTVQVRRVWSEAWT 946



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 11/168 (6%)

Query: 113 RRLNDFILHDENGLPQPLEMLEI--DDLFISGLILPLQ----ESSDREKEKGVRCEGFGR 166
           R L ++   D  G P+P+E L      L+ISG I P      + + R K    +      
Sbjct: 269 RSLVEWDFTDSEGRPEPIERLGKVEGGLYISGCIYPALGYDLDKAGRPKAARGKGAAAKG 328

Query: 167 IESWSISGYEDGSPV--IWLSTDIADYDCLKPASSYKKYYELFFEKARACIE-VYKKLSK 223
             + +      G  V  + + T  A Y C KPA+   + +    E      + VYK L+ 
Sbjct: 329 AAAAAAGVKALGRRVERVIVHTAAAQYVCGKPAAGAARGFMAQLEPQLGLADLVYKSLTP 388

Query: 224 TSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQL 271
            +GG  D S DE+ A V R+ +      GG  +   +   G+FI  QL
Sbjct: 389 AAGGRMDTSFDEVCAKVARTKAKMARQYGGADMA--LQLHGDFILEQL 434


>gi|46048774|ref|NP_996835.1| DNA (cytosine-5)-methyltransferase 1 [Gallus gallus]
 gi|12230343|sp|Q92072.1|DNMT1_CHICK RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            AltName: Full=DNA methyltransferase GgaI; Short=DNA MTase
            GgaI; Short=M.GgaI; AltName: Full=MCMT
 gi|1109610|dbj|BAA07867.1| DNA (cytosine-5-)-methyltransferase [Gallus gallus]
 gi|1096715|prf||2112268A DNA methyltransferase
          Length = 1537

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 390/1293 (30%), Positives = 615/1293 (47%), Gaps = 212/1293 (16%)

Query: 402  DELLA-YDSDYDSCD-IDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGK 459
            DE L+ +D++ D  +  + LP+  +  +S+Y+    L   +   ++   +I++   G+ K
Sbjct: 294  DERLSIFDANEDGFESYEDLPQHKVTSFSVYDKRGHLCPFDTGLIE--RNIELYFSGAVK 351

Query: 460  MISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDL 517
             I D+    CLD        GV   +        L  I  W I    G     I   T  
Sbjct: 352  PIYDDNP--CLD-------GGVRAKK--------LGPINAWWITGFDGGEKALIGFTTAF 394

Query: 518  AWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHS 577
            A Y L +PS++YAP +  + +   ++  ++  L+    VS   + D++ ++         
Sbjct: 395  ADYILMEPSEEYAPIFALMQEKIYMSKIVVEFLQNNRDVS---YEDLLNKIETTVPPVGL 451

Query: 578  YISSDPAAVERYVVVHGQIVLQLFAEYPD--EQIKKCAFIIGLMKKMEERHHTKWLVKKK 635
              +      E  ++ H Q V++    Y +  +  +    I   M+ + +      L K++
Sbjct: 452  NFNR---FTEDSLLRHAQFVVEQVESYDEAGDSDEPPVLITPCMRDLIKLAGVT-LGKRR 507

Query: 636  KVQKSEINLNPRASMGPVVVSKRK-VMQATTTRLINRIWGEYYSNY----SPEDGKEET- 689
             V++  I         P  + K K   +ATTT+L+  I+  ++S        ED KE   
Sbjct: 508  AVRRQAIR-------HPTRIDKDKGPTKATTTKLVYLIFDTFFSEQIEKDEREDDKENAM 560

Query: 690  ------ACEANEDEEVEE----QGENEEDDTEEEKLISEERQISCSVAVQI--------- 730
                   CE  +  E  +    Q   +   +   K    +R+   ++AV+          
Sbjct: 561  KRRRCGVCEVCQQPECGKCKACQNMVKFGGSGRSKQACLQRRCP-NLAVREADEDEEVDD 619

Query: 731  ---------------KSRSTKKEITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEV 774
                           K +  K  I+W GE ++  G    Y++  +  E + +G  V V  
Sbjct: 620  NIPEMPSPKKMLQGRKKKQNKSRISWVGEPIKSDGKKDFYQRVCIDSETLEVGDCVSVSP 679

Query: 775  DELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQD 834
            D+  +   +  V  M+E + G ++FH      GS TVLG T++  E+FL ++C D++L  
Sbjct: 680  DDPTKPLYLARVTAMWEDSSG-QMFHAHWFCPGSDTVLGATSDPLELFLVDECEDMQLSY 738

Query: 835  I--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
            I  K  V+    S  W  +   D+      D  R             Y   +++ +  A 
Sbjct: 739  IHGKVNVIYKPPSENWAMEGGLDMEIKMVEDDGRT------------YFYQMWYDQEYAR 786

Query: 893  FILPVDSMGLGVGS---CHACGTKESEKEKETFKV-------HSKTSFVYGT---AEYFV 939
            F  P  +  +       C +C   +  + KE  KV         K  +   T    +Y V
Sbjct: 787  FETPPRAQPMEDNKYKFCLSCARLDEVRHKEIPKVAEPLDEGDGKMFYAMATKNGVQYRV 846

Query: 940  HDYVYISPHHFTWD------------------------KAEGETFKAGRNVGLKPYVVCQ 975
             D VY+ P  F++                         +   E  K        PY V +
Sbjct: 847  GDSVYLLPEAFSFSMKPASPAKRPKKEAVDEDLYPEHYRKYSEYIKGSNLDAPDPYRVGR 906

Query: 976  LLEII----VPKEPKRAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIF 1029
            + EI        +P  A++K   +++ +F+RP++   S +  Y +DI  +Y+S+E   + 
Sbjct: 907  IKEIFCHIRTNGKPNEADIK---LRIWKFYRPENTHKSMKATYHADINLLYWSDEETTVD 963

Query: 1030 VEAIAGKCEVRKKNDIPAC---NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGS 1086
              A+ G+C V    D+       +       +F E  +  +K S +  P H +   + G 
Sbjct: 964  FCAVQGRCTVVYGEDLTESIQDYSAGGLDRFYFLEAYNAKTK-SFEDPPNHARSSGNKGK 1022

Query: 1087 LDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTK 1146
               +   + K       E   + E +    +   L TLD+F+GCGGLSEG  Q+G+S T 
Sbjct: 1023 GKGKGKGKGKGKSSTTCE---QSEPEPTELKLPKLRTLDVFSGCGGLSEGFHQAGVSETL 1079

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIE  EPA +AF+LN+P + +   +CNV+L+ VM              + E   SL + 
Sbjct: 1080 WAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK 1125

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
                LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLE
Sbjct: 1126 ----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLE 1181

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA + AA+P + LP 
Sbjct: 1182 NVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPM 1241

Query: 1327 WPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +PEP+HVFA  A +L +++ D    S +  T +G PFR +TVRDT+ DLP + NGAS   
Sbjct: 1242 FPEPLHVFAPRACQLSVVVDDKKFVSNITRTYSG-PFRTITVRDTMSDLPEIRNGASALE 1300

Query: 1385 MEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVK 1442
            + Y  +P SWFQ++IRG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+
Sbjct: 1301 ISYNGEPQSWFQRQIRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVR 1360

Query: 1443 LSTG----------------------------------------QVVDLIPWCLPNTAKR 1462
            LS G                                        Q   LIPWCLP+T  R
Sbjct: 1361 LSDGTSTRKLRYTHHEKKNGRSSSGALRGVCSCAEGKPCDPADRQFNTLIPWCLPHTGNR 1420

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
            HN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  
Sbjct: 1421 HNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLF 1480

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            G+I  KHRQ+GNAVPP LA A+G +++  V ++
Sbjct: 1481 GNILDKHRQVGNAVPPPLAKAIGLEIRACVGAR 1513



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 34/237 (14%)

Query: 95  DEIVAVGLTARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILP 146
           DE +++   A +DG     D P  ++  F ++D+ G   P +   I+   +L+ SG + P
Sbjct: 294 DERLSI-FDANEDGFESYEDLPQHKVTSFSVYDKRGHLCPFDTGLIERNIELYFSGAVKP 352

Query: 147 LQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYE 205
           + + +    + GVR +  G I +W I+G++ G   +I  +T  ADY  ++P+  Y   + 
Sbjct: 353 IYDDNPC-LDGGVRAKKLGPINAWWITGFDGGEKALIGFTTAFADYILMEPSEEYAPIFA 411

Query: 206 LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VI 261
           L  EK    I + K + +    N D S ++LL  +  ++        G++   F    ++
Sbjct: 412 LMQEK----IYMSKIVVEFLQNNRDVSYEDLLNKIETTVPPV-----GLNFNRFTEDSLL 462

Query: 262 SQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKEESSKRENFVQVNAASLGGNLAI 318
              +F+  Q+   DE    +     E PVL+     +    + +++   +LG   A+
Sbjct: 463 RHAQFVVEQVESYDEAGDSD-----EPPVLI-----TPCMRDLIKLAGVTLGKRRAV 509


>gi|156365066|ref|XP_001626663.1| predicted protein [Nematostella vectensis]
 gi|156213548|gb|EDO34563.1| predicted protein [Nematostella vectensis]
          Length = 1263

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 326/919 (35%), Positives = 492/919 (53%), Gaps = 126/919 (13%)

Query: 726  VAVQIKSRSTKKEITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIY 784
            V ++I ++S+ K + W GE     G    Y   +++ + VSLG  V V  D+      I 
Sbjct: 363  VLIRILNKSSYKNLEWLGEPAWIEGKKKYYSSVLINKKKVSLGDFVKVCPDDPHIPLYIG 422

Query: 785  FVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR 844
             V+YM+E++ G KLFH   M RG+ TVLG TA+  E+FL + C D  L  + +T  V  +
Sbjct: 423  CVQYMWESSSGEKLFHARWMTRGAETVLGETADSAELFLCDDCDDNPLGSVLETCEVTYK 482

Query: 845  --SVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP------ 896
              SV W       +  +  ++   +++       T +Y K  Y PE G F   P      
Sbjct: 483  DPSVDW-------LQGSAGMEIETSDDEHNDN--TFFYHK-WYHPEMGRFVDPPPEYQTK 532

Query: 897  VDSMGLGVGSCHACGTKESEKEKET-----FKVHSKTSFVYGTAEYFVHDYVYISPHHFT 951
            VD        C +C    +E++  T     F     TSF    +E+ V D VY+ P  F+
Sbjct: 533  VDRTQQKF--CESCIRNSAEEKVITPDISLFSRKIVTSFTLNGSEFTVSDCVYLDPEAFS 590

Query: 952  WDKAEGETFKAGR----NVGLKPYVVCQLLEII------VPKEPKRAEVKSTQVK----- 996
            ++    E+    R    +  L P    +  E +      VP+  +   +KS  VK     
Sbjct: 591  FNVRPKESKPHKREGSVDEDLYPEYYRKSSEYVKGSNQNVPEPLRIGRIKSIYVKSSSGK 650

Query: 997  -----------VRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKN 1043
                       V +F+RP++    A  ++ +D+  +Y+++E   +   ++ GKC V    
Sbjct: 651  LKGDGDDVMLTVTKFYRPENTHKGANASHQADLNLLYWTDEEAKVSALSVKGKCMVACGE 710

Query: 1044 DIPACNAPAIFQH-----IFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKG 1098
            DI +    +I ++      F+    ++      ++LP   +   S G    +   + K  
Sbjct: 711  DIHS----SIQEYSSKGDCFYYLEAYNSQTKEFEELPPQARDCSSKGKGKGKGKGKGKGK 766

Query: 1099 KCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEA 1158
               +   E  +  Q   +    L +LD+FAGCGGLSEGL Q+G++ + WAIE EEPA +A
Sbjct: 767  SSADSGPESCMHDQQKEAHVRKLRSLDVFAGCGGLSEGLHQAGVAESLWAIEKEEPAAQA 826

Query: 1159 FKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVD 1218
            ++LN+P   +  ++CN +L+  ME  G+A +  ST +               +P  G+V+
Sbjct: 827  YRLNNPGCTVFTDDCNTLLKLAME--GEATN--STGQ--------------KIPQRGEVE 868

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             + GGPPCQGFSGMNRFN   +S  +  +++++LS+ D+++PR+F+LENVRNFVSF K  
Sbjct: 869  LLCGGPPCQGFSGMNRFNTREYSLFKNSLVVSYLSYCDFYRPRFFILENVRNFVSFKKSM 928

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--A 1336
              +LTL  LL MGYQ  FG+L+AG +GV Q+R+RA I AA+P + LP +PEP H F+   
Sbjct: 929  VLKLTLRCLLRMGYQCTFGVLQAGCYGVPQTRRRAIIMAAAPGEELPLYPEPTHCFSPRT 988

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
             +L +M+ +    S +  TA+ AP+R +TVRD + DLP + NGAS     Y+ + +S FQ
Sbjct: 989  CQLTVMVDEKKFTSNITRTAS-APYRTITVRDAMSDLPEIRNGASAAESSYEGEAISHFQ 1047

Query: 1397 KRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG-------- 1446
            ++IRGN    +L DHI KEM+ L   R + IP  PG+DW DLP+++++LS G        
Sbjct: 1048 RQIRGNQYQPLLRDHICKEMSALVEARMRHIPLAPGSDWRDLPNKEIRLSDGTYSKKLQY 1107

Query: 1447 --------------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
                                            Q   LIPWCLP+T  RHN W GL+GRL+
Sbjct: 1108 THHDKKNEKGSSQRLRGVCSCAEGRPCEPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLE 1167

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+G F T+IT+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F+GSI  KHRQ+GN
Sbjct: 1168 WDGYFSTTITNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFYGSILDKHRQVGN 1227

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            AVPP LA A+GR++K+ +E
Sbjct: 1228 AVPPPLAAAIGREIKKGLE 1246


>gi|350422372|ref|XP_003493144.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Bombus
            impatiens]
          Length = 1368

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 381/1289 (29%), Positives = 583/1289 (45%), Gaps = 239/1289 (18%)

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
            DQ P+  L  +S+Y+ +  L +            D  +     M+   G    +  + + 
Sbjct: 148  DQRPQNKLTYFSVYDKNGHLCAF-----------DTGLIEKNVMLYFSGYIKAIYEEDAS 196

Query: 477  CTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYE 534
              +GV  A+D G        I EW +    G  +  I   T    Y L  PS++Y P+ +
Sbjct: 197  PENGVP-AKDMG-------PINEWYVSGFDGGELALIGFNTAFCEYILMDPSEEYTPFMD 248

Query: 535  PVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERY----V 590
             V +   ++  II  L ++   S   + D++ +L  I           P  + ++    +
Sbjct: 249  VVREKIYMSKLIIEFLLDEINPS---YEDLLNKLQTI---------VPPKGITKFTEDSL 296

Query: 591  VVHGQIVLQLFAEYPDEQIKKCAFIIG--LMKKMEERHHTKWLVKKKKVQKSEINLNPRA 648
            + H Q +      + D    +   +I    M+ +                 + + L  R 
Sbjct: 297  LRHAQFICDQVLSFDDSASAEDTLLITSPCMRAL--------------ANLAGVTLGKRV 342

Query: 649  SMGPVVVSKRKV-----MQATTTRLINRIWGEYYSNYSPEDGKEETA------------- 690
            S+  + + ++KV      +ATTT+L+N ++   +++   +     T              
Sbjct: 343  SLRQMRLREQKVRKPAWTKATTTQLVNNMFENIFADQLTKHNDTITMGPKRQRCGVCEHC 402

Query: 691  -------CEANED----------------EEVEEQGENEEDDTEEEKLISEERQISCSVA 727
                   C A +D                         E DD++ E   +E++  +  + 
Sbjct: 403  QQPDCGLCNACKDMIKFGGTGRGKQACIKRRCPNMAIQEADDSDPE---NEDQYDTLRIE 459

Query: 728  VQIKSRST----KKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPV 782
            V+   R      KK+I W G+ +  + L   YK  IV  E + +   VLVE         
Sbjct: 460  VEECRRKVFKELKKDIVWIGDQIASNNLKTFYKSVIVGDEKIEINDYVLVEPRNPAIPSH 519

Query: 783  IYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVD 842
            +  V YM+E   G K FH   + RG+ T+LG T++  E+FL++ C D+  + ++    V 
Sbjct: 520  VAKVIYMWENKNGIKQFHANWLHRGNDTILGETSDPIELFLSDDCDDVPFKSVRSKCTVI 579

Query: 843  IRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL 902
             ++VP      K+ A    +D     E K     T +Y K  Y P    F     D   L
Sbjct: 580  FKNVP------KNWAELGNMDLNSENEIKDLDGKTFFYQKR-YTPATARFEDPLPDPKCL 632

Query: 903  GVGS----CHACGTKESEKEKETFKVH------SKTSFVYGTAEYFVHDY-----VYISP 947
               +    C AC      ++    KV+      S    +YG  +Y   DY     V++ P
Sbjct: 633  PKENRHRFCPACAHLREVEQFNMPKVYERIEEKSTKEVIYGLVKYKGEDYRVGTTVFLQP 692

Query: 948  HHFTW------------------------------DKAEGETFKAGRNVGLKPYVVCQLL 977
              F +                              D  +G  F         P+ +  + 
Sbjct: 693  KAFNFKYKIIHQDIQKLKQENVDEDMYPEFYRKSSDHVKGSNFDTP-----DPFCIGYIN 747

Query: 978  EIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC--SDIREVYYSEETHLIFVEAIAG 1035
            EI V            ++KV + +RP++          +D+  VY+S+E   I    + G
Sbjct: 748  EIYVSTNDMLVAPSDIKIKVNKLYRPENTHKNVTLMEQADLNMVYWSDEVCNIKFIEVVG 807

Query: 1036 KCEVRKKNDIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAAS 1093
            KC +    ++        A   + F+    ++  + +  + P H     S G       +
Sbjct: 808  KCYLAYSENLNQTVDEWTAEGPNRFYFNEAYNAQEKTFNEPPYHA---ISIGKSGKSKGN 864

Query: 1094 RRKKGKCIEGEDELEVEKQGGASQ-------ENHLATLDIFAGCGGLSEGLQQSGISSTK 1146
             + KGK  E     E EK+   S+          L TLD+FAGCGGLSEGL Q+GI+   
Sbjct: 865  LKFKGKKTE-----ESEKRAFVSRPIEYNKISKKLKTLDVFAGCGGLSEGLHQAGIAENL 919

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIE EE A  A++LN+P + +  ++CN++L+ VM       D  +T+E  +        
Sbjct: 920  WAIEKEEAAANAYRLNNPNTTVFTDDCNILLKKVM-------DGETTNEIGQ-------- 964

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
                LP  GQV+ + GGPPCQGFSGMNRFN   +S  +  +++++LS+ DY++P +F++E
Sbjct: 965  ---KLPQKGQVELLCGGPPCQGFSGMNRFNSRQYSLFKNSLVVSYLSYCDYYRPNFFIME 1021

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSF +    +LTL  L+ MGYQ  FGIL+AG +GV Q+R+R  I AA+P   LP+
Sbjct: 1022 NVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGILQAGNYGVPQTRRRIIILAAAPGQILPQ 1081

Query: 1327 WPEPMHVFAAPELKI-MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM 1385
            +PEP HVF+    ++ +L DN +YS   S    APFR ++VRD + DLP + NG +K  M
Sbjct: 1082 YPEPTHVFSKRACQLSVLVDNKKYSTNCSWTESAPFRTISVRDALFDLPEIKNGWNKEEM 1141

Query: 1386 EYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKL 1443
             Y ND +S FQ+RIRG     +L DHI KEM  L   R   IP   G+DW DLP+  V+L
Sbjct: 1142 SYTNDAISHFQRRIRGKQYQPLLRDHICKEMAPLVETRIAHIPVASGSDWRDLPNITVRL 1201

Query: 1444 STG----------------------------------------QVVDLIPWCLPNTAKRH 1463
            S G                                        Q   LIPWCLP+T  RH
Sbjct: 1202 SDGTYSKKLEYTHDDKKVGKSSTGAYRGVCSCCMGKQCDPTDKQFNTLIPWCLPHTGNRH 1261

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
            N W GL+GRL+W G F T+IT+P+PMGK G   HP Q R+++VRECARSQGFPDS++F+G
Sbjct: 1262 NHWAGLYGRLEWNGFFSTTITNPEPMGKQGRVLHPVQTRVVSVRECARSQGFPDSFRFYG 1321

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            +I  KHRQIGNAVPP L  A+G +L++ +
Sbjct: 1322 TILDKHRQIGNAVPPPLGVAIGHELRKCL 1350



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 110 RPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFGR 166
           RP  +L  F ++D+NG     +   I+    L+ SG I  + E  D   E GV  +  G 
Sbjct: 150 RPQNKLTYFSVYDKNGHLCAFDTGLIEKNVMLYFSGYIKAIYEE-DASPENGVPAKDMGP 208

Query: 167 IESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTS 225
           I  W +SG++ G   +I  +T   +Y  + P+  Y  + ++  EK    I + K + +  
Sbjct: 209 INEWYVSGFDGGELALIGFNTAFCEYILMDPSEEYTPFMDVVREK----IYMSKLIIEFL 264

Query: 226 GGNSDCSIDELLAGVVRSMSGSKCFRGGVS--IKDFVISQGEFIFNQLIGLDETSKKNDQ 283
               + S ++LL   ++++   K    G++   +D ++   +FI +Q++  D+++   D 
Sbjct: 265 LDEINPSYEDLL-NKLQTIVPPK----GITKFTEDSLLRHAQFICDQVLSFDDSASAEDT 319

Query: 284 KFAELPVLVAL 294
                P + AL
Sbjct: 320 LLITSPCMRAL 330


>gi|74136491|ref|NP_001028141.1| DNA (cytosine-5)-methyltransferase 1 [Monodelphis domestica]
 gi|22023943|gb|AAM89258.1|AF527541_1 cytosine-5-methyltransferase [Monodelphis domestica]
          Length = 1514

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 316/918 (34%), Positives = 477/918 (51%), Gaps = 133/918 (14%)

Query: 731  KSRSTKKEITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            K +  K  I+W G  ++  G    Y+K  +  E++ +G  V V  D+  +   +  +  +
Sbjct: 619  KKKQNKTRISWFGAPIKSDGKKDYYQKVCIDSEILEVGDCVSVSPDDPTKPLYLARITAL 678

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVP 847
            +E + G ++FH      G  TVLG T++  E+FL ++C D++L  I  K  V+    S  
Sbjct: 679  WEDSSG-QMFHAHWFCAGIDTVLGATSDPLELFLVDECEDMQLSYIHGKVNVIYKAPSEN 737

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS- 906
            W  +   D+      D  R             Y   +++ +  A F  P           
Sbjct: 738  WSMEGGLDMEIKMVEDDGRT------------YFYQMWYDQDYARFESPPKIQSTEENKY 785

Query: 907  --CHACGTKESEKEKETFKVHSKT-----SFVYGTA-----EYFVHDYVYISPHHFTWD- 953
              C +C      ++KE  KV           +YG A     +Y   D V+  P  F ++ 
Sbjct: 786  KFCISCARLAEMRQKEIPKVTEPLEELDHKVLYGLAMKNGVQYRTGDGVFFLPEAFGFNM 845

Query: 954  -----------------------KAEGETFKAGRNVGLKPYVVCQLLEIIVPK----EPK 986
                                   +   E  K        PY + ++ EI   K    +P 
Sbjct: 846  KLCSPTKRSKKESVDEELYPEHYRKYSEYIKGSNQDAPDPYRIGRIKEIFCSKRSNGKPN 905

Query: 987  RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKND 1044
             A++K   ++V +F+RP++   S + ++ +DI  +Y+S+E  ++  +A+ G+C +    D
Sbjct: 906  EADIK---LRVNKFYRPENTHKSMKASHHADINLLYWSDEEAIVDFKAVQGRCVIEYGED 962

Query: 1045 IPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGK-CI 1101
            +  C  +  A     F+    ++    S +  P H +   + G    +   + +     +
Sbjct: 963  LTECIQDYSAGGSDRFYFLEAYNAKTKSFEDPPNHARSPGNKGKGKGKGKGKSRGKSIAV 1022

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
            E  +   +E      +   L TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+L
Sbjct: 1023 EPSEHETIE-----VKPPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWEPAAQAFRL 1077

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN 1221
            N+P + +   +CNV+L+ VM              + E   SL +     LP  G V+ + 
Sbjct: 1078 NNPGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLC 1119

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +
Sbjct: 1120 GGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLK 1179

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APEL 1339
            LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L
Sbjct: 1180 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPMFPEPLHVFAPRACQL 1239

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
             +++ D    S + +  N APFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++I
Sbjct: 1240 SVVVDDKKFVSNI-TRMNSAPFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQI 1298

Query: 1400 RGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------- 1446
            RG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G           
Sbjct: 1299 RGSQYQPILRDHICKDMSALVAGRMRHIPLAPGSDWRDLPNIEVRLSDGTTTRKLRYTHH 1358

Query: 1447 -----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                                         Q   LIPWCLP+T  RHN W GL+GRL+W+G
Sbjct: 1359 EKKNGRSNTGALRGVCSCAEGKPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDG 1418

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
             F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVP
Sbjct: 1419 FFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVP 1478

Query: 1538 PTLAFALGRKLKEAVESK 1555
            P LA A+G ++K  V +K
Sbjct: 1479 PPLAKAIGLEIKLCVLAK 1496



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 24/213 (11%)

Query: 95  DEIVAVGLTARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILP 146
           DE +++   A +DG     D P  R+  F ++D+ G   P +   I+   +L+ SG + P
Sbjct: 278 DERLSI-FDANEDGFESYDDLPQHRVTSFSVYDKKGHLCPFDTGLIEKNIELYFSGTVKP 336

Query: 147 LQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYE 205
           + + +    + GVR +  G I +W I+G++ G   +I  +T  ADY  + P+  Y   + 
Sbjct: 337 IYDDNPC-LDGGVRAKKLGPINAWWITGFDGGEKALIGFTTAFADYILMAPSEEYAPIFA 395

Query: 206 LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VI 261
           L  EK    I + K + +    N D S ++LL  +  ++  +     G++   F    ++
Sbjct: 396 LMQEK----IYMSKIVVEFLQNNPDVSYEDLLNKIETTVPPA-----GLNFNRFTEDSLL 446

Query: 262 SQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
              +F+  Q+   DE    ++Q     P +  L
Sbjct: 447 RHAQFVVEQVESYDEAGDSDEQPVIITPCMRDL 479


>gi|417414438|gb|JAA53513.1| Putative translation initiation factor 5b eif-5b, partial [Desmodus
            rotundus]
          Length = 1581

 Score =  521 bits (1342), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 319/888 (35%), Positives = 467/888 (52%), Gaps = 137/888 (15%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G    YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 728  ISWIGEAVKTEGKKTYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSIQGQ 787

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G  TVLG T++  E+FL ++C D++L  I  K TVV    S  W  +   D
Sbjct: 788  MFHAHWFCAGIDTVLGATSDPLELFLVDECEDMQLSYIHSKVTVVYKAPSENWAMEGGMD 847

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   +   AE+  K    T +Y   L++ +  A F  P  +          C +C  
Sbjct: 848  ------PEALMAEDNGK----TYFY--QLWYDQDYARFESPPKTQPTEDNKYKFCASCAR 895

Query: 913  KESEKEKETFKVHSKTS-----FVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +         YG+A     +Y V D VY+ P  FT++       K 
Sbjct: 896  LAEMRQKEIPRVVEQVEDIDGRLFYGSASKDGVQYRVGDGVYLLPEAFTFNIKMSSPVKR 955

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
             R   +                        +PY + ++ EI   K+    +   T +K+R
Sbjct: 956  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCVKK-NNGKPNETDIKIR 1014

Query: 999  --RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------ 1048
              +F+RP++   S   +Y +DI  +Y+S+E  ++   A+ G+C V    D+P C      
Sbjct: 1015 LNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFSAVQGRCTVEYGEDLPECLQDFSA 1074

Query: 1049 NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELE 1108
              P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E + E
Sbjct: 1075 GGPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKARVKSQPCEPSEPKAE 1130

Query: 1109 VEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLM 1168
            +       Q   L TLD+F+GCGGLSEG  Q+GIS T WA+E  +PA +AF+LN+P S +
Sbjct: 1131 I-------QLRKLRTLDVFSGCGGLSEGFHQAGISETLWAVEMWDPAAQAFRLNNPGSTV 1183

Query: 1169 LINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
               +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQG
Sbjct: 1184 FTEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQG 1225

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
            FSGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+
Sbjct: 1226 FSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLV 1285

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDN 1346
             MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D 
Sbjct: 1286 RMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDK 1345

Query: 1347 YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MA 1404
               S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    
Sbjct: 1346 KFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASAQEISYNGEPQSWFQRQLRGSQYQP 1404

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------ 1446
            +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                  
Sbjct: 1405 ILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDKKNGCS 1464

Query: 1447 ----------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T
Sbjct: 1465 STGALRGVCSCAEGKACDSTARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVT 1524

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            +P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+
Sbjct: 1525 NPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQV 1572



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 401 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 459

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + +  EK    I + K + +   
Sbjct: 460 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPVFSVMQEK----IYISKIVVEFLQ 515

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   D     ++Q   
Sbjct: 516 NNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDAAGDSDEQPIF 574

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 575 LTPCMRDL 582


>gi|395512631|ref|XP_003760539.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Sarcophilus
            harrisii]
          Length = 1486

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 317/920 (34%), Positives = 478/920 (51%), Gaps = 137/920 (14%)

Query: 731  KSRSTKKEITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            K +  K  I+W G  ++  G    Y+K  +  E + +G  V V  D+  +   +  +  +
Sbjct: 591  KKKQNKTRISWVGAPIKSDGKKDYYQKVCIDSETLEVGDCVSVSPDDPTKPLYLARITAL 650

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVP 847
            +E + G ++FH      G  TVLG T++  E+FL ++C D++L  I  K  V+    S  
Sbjct: 651  WEDSSG-QMFHAHWFCAGIDTVLGATSDPLELFLVDECEDMQLSYIHGKVNVIYKAPSEN 709

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF-----ILPVDSMGL 902
            W  +   D+      D  R             Y   +++ +  A F     I P +    
Sbjct: 710  WSMEGGLDMEIKMVEDDGRT------------YFYQMWYDQDYARFESPPKIQPTEDNKY 757

Query: 903  GVGSCHACGTKESEKEKETFKVHSKT-----SFVYGTA-----EYFVHDYVYISPHHFTW 952
                C +C      ++KE  +V           +YG       +Y   D V+  P  F +
Sbjct: 758  KF--CISCARLAEMRQKEIPRVTEPLEELDHKVLYGLGMKNGVQYRTGDGVFFLPEAFGF 815

Query: 953  D------------------------KAEGETFKAGRNVGLKPYVVCQLLEIIVPK----E 984
            +                        +   E  K       +PY + ++ EI   K    +
Sbjct: 816  NMKLCSPTKRSKKESVDEELYPEHYRKYSEYIKGSNQDAPEPYRIGRIKEIFCNKRNNGK 875

Query: 985  PKRAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKK 1042
            P  A++K   ++V +F+RP++   S + ++ +DI  +Y+S+E  ++  +A+ G+C +   
Sbjct: 876  PNEADIK---LRVNKFYRPENTHKSMKASHHADINLLYWSDEEAIVDFKAVQGRCIIEYG 932

Query: 1043 NDIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKL-RYSSGSLDSEAASRRKKGK 1099
             D+  C  +  A     F+    ++    S +  P H +  R             R K  
Sbjct: 933  EDLTECIQDYSAGGSDRFYFLEAYNAKTKSFEDPPNHARSPRNKGKGKGKGKGKSRGKSV 992

Query: 1100 CIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159
             +E  ++  +E      +   L TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF
Sbjct: 993  AVEPSEQETIE-----VKLPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWEPAAQAF 1047

Query: 1160 KLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDF 1219
            +LN+P + +   +CNV+L+ VM              + E   SL +     LP  G V+ 
Sbjct: 1048 RLNNPGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEM 1089

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +   
Sbjct: 1090 LCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMV 1149

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--AP 1337
             +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A 
Sbjct: 1150 LKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPMFPEPLHVFAPRAC 1209

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK 1397
            +L +++ D    S + +  N APFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+
Sbjct: 1210 QLSVVVDDKKFVSNI-TRMNSAPFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQR 1268

Query: 1398 RIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------- 1446
            +IRG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G         
Sbjct: 1269 QIRGSQYQPILRDHICKDMSALVAGRMRHIPLAPGSDWRDLPNIEVRLSDGTTTRKLRYT 1328

Query: 1447 -------------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
                                           Q   LIPWCLP+T  RHN W GL+GRL+W
Sbjct: 1329 HHEKKNGRSNTGALRGVCSCAEGKPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEW 1388

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNA
Sbjct: 1389 DGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNA 1448

Query: 1536 VPPTLAFALGRKLKEAVESK 1555
            VPP LA A+G ++K +V +K
Sbjct: 1449 VPPPLAKAIGLEIKFSVLAK 1468



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 24/213 (11%)

Query: 95  DEIVAVGLTARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILP 146
           DE +++   A +DG     D P  R+  F ++D+ G   P +   I+   +L+ SG + P
Sbjct: 250 DERLSI-FDANEDGFESYDDLPQHRVTSFSVYDKKGHLCPFDTGLIEKNIELYFSGTVKP 308

Query: 147 LQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYE 205
           + + +    + GVR +  G I +W I+G++ G   +I  +T  ADY  + P+  Y   + 
Sbjct: 309 IYDDNPC-LDGGVRAKKLGPINAWWITGFDGGEKALIGFTTAFADYILMAPSEEYAPIFA 367

Query: 206 LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VI 261
           L  EK    I + K + +    N D S ++L+  +  ++  +     G++   F    ++
Sbjct: 368 LMQEK----IYMSKIVVEFLQNNPDVSYEDLINKIETTVPPA-----GLNFNRFTEDSLL 418

Query: 262 SQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
              +F+  Q+   DE    ++Q     P +  L
Sbjct: 419 RHAQFVVEQVESYDEAGDSDEQPVIITPCMRDL 451


>gi|12230342|sp|Q27746.1|DNMT1_PARLI RecName: Full=DNA (cytosine-5)-methyltransferase PliMCI; AltName:
            Full=DNA methyltransferase PliMCI; Short=DNA MTase
            PliMCI; Short=M.PliMCI; AltName: Full=Dnmt1; AltName:
            Full=MCMT
 gi|1004286|emb|CAA90563.1| DNA (cytosine-5-)-methyltransferase [Paracentrotus lividus]
          Length = 1612

 Score =  518 bits (1334), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 328/967 (33%), Positives = 492/967 (50%), Gaps = 132/967 (13%)

Query: 685  GKEETACEANE--DEEVEEQGENEED--DTEEEKLISEERQISCSVAVQIKSRSTKK-EI 739
            GK + AC+     +  V+E  EN+ D  D    K   +E++      ++   +  K+ ++
Sbjct: 660  GKAKQACKDRRCPNMAVQEADENDIDEMDNSSNKENKDEKKAKKGRKLETPLKKKKRAKV 719

Query: 740  TWEGECVRKSG-LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKL 798
            TW  E    +   A YK A++  E + +G  VL+  D+  +   +  V YM++ + G  +
Sbjct: 720  TWLDEPTEVTEERAYYKAAMLDDEKIEIGDCVLIHPDDPTKPLFMARVIYMWQESQGEMM 779

Query: 799  FHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIAN 858
            FH      GS TVLG T++  EVF  ++C+D  L  +     V  ++ P       D + 
Sbjct: 780  FHAQWFVYGSETVLGETSDPLEVFPIDECQDTYLGSVNAKCTVIYKAPP------NDWSM 833

Query: 859  ADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF-----FILPVDSMGLGVGSCHACGTK 913
               +D    +   K+     ++ +  Y PE   F      + P D       SC  C   
Sbjct: 834  IGGIDDPETDHVIKEDDGKTFFYQKWYDPELARFEDYEVLMAPDDIPAHRFCSC--CLKN 891

Query: 914  ESEKEKETFKVHSK------------TSFVYGTAEYFVHDYVYISPHHFTWD-------- 953
            E  +EKET +  +K            +S+ Y   E+ + D VY+ P  F+++        
Sbjct: 892  ERAQEKETARPGAKLEDQDDSSKVLYSSWHYKGNEFQIGDGVYLLPEVFSFNIKQKVVTK 951

Query: 954  -----------------KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVK 996
                             +   E  K       +P+ + +++ I   K        + +++
Sbjct: 952  KPVSKKDVDEDLYPENYRKSSEYVKGSNLECPEPFRIGKIISIYTTK-----SNSTVRLR 1006

Query: 997  VRRFFRPDDISAEK--AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN--APA 1052
            V + +RP+D    +  AY +D+  +Y+SEE  +  +E + GKC V    D+        A
Sbjct: 1007 VNKMYRPEDTHKGRTAAYQADLNVLYWSEEEAVTELEVVQGKCSVVCAEDLNVSTDEYSA 1066

Query: 1053 IFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQ 1112
               H F+    +D  +   +  P+    +  S  +  +   + K     +   E E EK+
Sbjct: 1067 GGPHKFYFREAYDSERKCFEDPPS----KSRSTRMKGKGKGKGKGKAKGKIAVEKEEEKE 1122

Query: 1113 GGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINN 1172
               +  N L  LD+FAGCGGLSEG  Q+GI  + WAIE EEPA +A++LN+P S +  ++
Sbjct: 1123 STETPFNKLKCLDVFAGCGGLSEGFHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDD 1182

Query: 1173 CNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGM 1232
            CN +LR VM+     E    T +               LP  G V+ + GGPPCQGFSGM
Sbjct: 1183 CNELLRLVMQ----GEKTSRTGQ--------------KLPQKGDVELLCGGPPCQGFSGM 1224

Query: 1233 NRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
            NRFN   +SK +  +I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGY
Sbjct: 1225 NRFNSREYSKFKNSLISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGY 1284

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYS 1350
            Q  FGIL+AG +GV Q+R+RA I AA+P + LP +PEP+HVF+  A  L +M+ +  +  
Sbjct: 1285 QCTFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLHVFSSRACSLSVMIGEK-KIE 1343

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTD 1408
            +       AP+R +TVRDT+ DLP + NGA K  + Y  +P S FQK+IRGN    +L D
Sbjct: 1344 SNNQWCLSAPYRTITVRDTMSDLPTINNGAQKLEISYDGEPQSDFQKKIRGNQYQPILRD 1403

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------------- 1446
            HI K+M+ L   R + IP  PG+DW DLP+  V L  G                      
Sbjct: 1404 HICKDMSSLVAARMKHIPLAPGSDWRDLPNIPVTLKDGTTCRKLRYTHKDKKNGKSSTGA 1463

Query: 1447 ------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
                              Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+P
Sbjct: 1464 LRGVCSCAEGDACDPSDRQFSTLIPWCLPHTGNRHNNWAGLYGRLEWDGFFSTTVTNPEP 1523

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            MGK G   HP+Q R+++VRECARSQGFPD+Y+F GSI  KHRQIGNAVPP +A A+G ++
Sbjct: 1524 MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQIGNAVPPPMAAAIGMEI 1583

Query: 1549 KEAVESK 1555
            K  +++K
Sbjct: 1584 KVCLQTK 1590



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +R   ++ +F ++D++      +  M+E + +L+ SG + P+ +  +   E G+  +  G
Sbjct: 388 ERLQHKITNFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDD-NPSTEGGIPTKRIG 446

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G   +I  ST  A+Y  + P+  YK ++    EK    I + K L + 
Sbjct: 447 PINEWYTTGFDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEK----IYMSKILIEF 502

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++LL  +  ++    C R     +D ++   +F+  Q+   D+ + +++  
Sbjct: 503 LQNNVDPVYEDLLTQIETTVPPEGCNR---FTEDSLLRHAQFVVEQVESYDDAADRDEVL 559

Query: 285 FAELPVLVAL 294
              +P +  L
Sbjct: 560 LITMPCMRDL 569


>gi|327284227|ref|XP_003226840.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Anolis
            carolinensis]
          Length = 1553

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 314/917 (34%), Positives = 473/917 (51%), Gaps = 128/917 (13%)

Query: 731  KSRSTKKEITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            K + +K  I+W G  V+  G    Y+K  +  E + +G  V V  DE  +   +  +  M
Sbjct: 655  KKKQSKSRISWVGHPVKSDGKKDYYQKVCIDSETLQIGDCVSVSPDEPTKALYLARITAM 714

Query: 790  FEATGGCK-LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSV 846
            +E     + +FH     RG+ TVLG T++  E+FL ++C D++L  I  K  V+    S 
Sbjct: 715  WEDVNSSEPMFHVHWFCRGTDTVLGATSDPLELFLVDECEDMQLSYIHGKVNVLYKAPSE 774

Query: 847  PWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP-VDSMGLGVG 905
             W  +   D+      D  R            Y+ +  Y  E   F   P +      + 
Sbjct: 775  NWSLEGGLDVEIKMVEDDGRT-----------YFYQMWYDQEYARFETPPKIQPTEDNIH 823

Query: 906  S-CHACGTKESEKEKETFKV-----HSKTSFVYGTA-----EYFVHDYVYISPHHFTWD- 953
              C +C   +  ++KE  +V      S+    Y  A     +Y V D V++ P  F++  
Sbjct: 824  KFCMSCIRLDEVRQKEIPRVLEPQEESEGKMFYSMAMKNGVQYRVGDGVFLLPDAFSFSL 883

Query: 954  -----------------------KAEGETFKAGRNVGLKPYVVCQLLEIIV----PKEPK 986
                                   +   E  K       +PY + ++ EI         P 
Sbjct: 884  RLASPIKRQKKEAVNEELYPEHYRKYSEYIKGSNQDAPEPYRIGRIKEIYCNIRSSGRPN 943

Query: 987  RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKND 1044
             AE+K   ++V + +RP++   S + +Y +DI  +Y+S+E   +  + + G+C V    D
Sbjct: 944  EAEIK---LRVYKLYRPENTHKSVKASYHADINLLYWSDEEASVEFKDVQGRCTVVYGED 1000

Query: 1045 IPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIE 1102
            +     +  A     F+    ++    + +  P H +   + G    +   + K      
Sbjct: 1001 LTENIQDYSASSSDRFYFLEAYNAKTKTFEDPPYHARSSGNKGKGKGKGKGKSKGKSSTA 1060

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E     E +    +   L +LD+F+GCGGLSEG  Q+ +S T WAIE  EPA +AF+LN
Sbjct: 1061 SEHS---EHEAAKMKPPKLRSLDVFSGCGGLSEGFHQAEVSETLWAIEMWEPAAQAFRLN 1117

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              + E   SL +     LP  G V+ + G
Sbjct: 1118 NPGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQ----KLPQKGDVEMLCG 1159

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +L
Sbjct: 1160 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKL 1219

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA + AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1220 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLHVFAPRACQLS 1279

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +  T +G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IR
Sbjct: 1280 VVVDDKKFVSNITRTYSG-PFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIR 1338

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G            
Sbjct: 1339 GSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGITTRKLRYTHHE 1398

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1399 KKNGRSSTGALRGVCSCAEGKACDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1458

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G++  KHRQ+GNAVPP
Sbjct: 1459 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNVLDKHRQVGNAVPP 1518

Query: 1539 TLAFALGRKLKEAVESK 1555
             LA A+G ++K  V +K
Sbjct: 1519 PLAKAIGLEIKSCVSAK 1535



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 29/212 (13%)

Query: 95  DEIVAVGLTARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILP 146
           DE +++   A +DG     D P  ++  F ++D  G   P +   I+   +L+ SG++ P
Sbjct: 314 DERLSI-FDANEDGFESYDDLPQHKVTSFSVYDRKGHLCPFDTGLIERNIELYFSGVVKP 372

Query: 147 LQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYE 205
           + + +    + GVR    G I +W I+G++ G   +I  +T  ADY  ++P+  Y   + 
Sbjct: 373 IYDDNPC-LDGGVRARKMGPINAWWITGFDGGEKALIGFTTAFADYILMEPSEEYAPIFA 431

Query: 206 LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VI 261
           L  EK    I + K + +    N D S ++LL  +  ++  +     G++   F    ++
Sbjct: 432 LMQEK----IYMSKIVVEFLQNNPDVSYEDLLNKIETTVPPA-----GLNFNRFTEDSLL 482

Query: 262 SQGEFIFNQLIGLDETSKKNDQKFAELPVLVA 293
              +F+  Q+   DE    +     E PVL+ 
Sbjct: 483 RHAQFVVEQVESYDEAGDSD-----EPPVLIT 509


>gi|348550184|ref|XP_003460912.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Cavia porcellus]
          Length = 1681

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 319/921 (34%), Positives = 481/921 (52%), Gaps = 138/921 (14%)

Query: 731  KSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            K +  K  I+W G+ ++  G    Y++  +  + + +G  V V  D+  +   +  V  +
Sbjct: 718  KMKQNKNRISWVGDAIKTDGKKTYYQQVCIDADTLEVGDCVSVIPDDPTKPLYLARVTAL 777

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWG 849
            +E + G ++FH      G+ TVLG T++  E+FL ++C D++L  I   V V +   P  
Sbjct: 778  WEGSNG-QMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKV-LHKEPSE 835

Query: 850  HQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV---DSMGLGVGS 906
            +   +   + + V  A   + K     T +Y   L++ +  A F  P     +       
Sbjct: 836  NWAMEGGMDPEAVLPAVPNDGK-----TYFY--QLWYDQDYARFESPPRMEPTEDNKYKF 888

Query: 907  CHACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAE 956
            C +C      ++KE  +V  +          +S   G   Y V D VY+ P  FT++   
Sbjct: 889  CASCVHLAEMRQKEIPRVLEQLDDLDGRVLYSSATKGGVLYRVGDGVYLPPEAFTFNIKL 948

Query: 957  GETFKAGRNVGL------------------------KPYVVCQLLEIIVPKE----PKRA 988
                K  R   +                        +PY + ++ EI  PK+    P  A
Sbjct: 949  SSPVKRPRKEPVDEELYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGKPNEA 1008

Query: 989  EVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP 1046
            E+K   +K+ +F+RP++   SA  ++ +DI  +Y+S+E  ++   A+ G+C V    D+ 
Sbjct: 1009 EIK---IKLNKFYRPENTHKSALASHHADINLLYWSDEEAVVEFWAVQGRCTVEYGEDLA 1065

Query: 1047 AC------NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKC 1100
             C        P  F   +F E  +  SK + +  P H +   + G    +  S+ K    
Sbjct: 1066 ECLQDYCAGGPDRF---YFLEAYNAKSK-TFEDPPNHARSPRNKGKGKGKGKSKAKSQVS 1121

Query: 1101 IEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160
               E EL ++          L TLD+F+GCGGLSEG  Q+GI  T WAIE  EPA +AF+
Sbjct: 1122 EPSEPELAIKLP-------KLRTLDVFSGCGGLSEGFHQAGICETLWAIEMWEPAAQAFR 1174

Query: 1161 LNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFI 1220
            LN+P S +   +CNV+L+ VM                     +   +   LP  G V+ +
Sbjct: 1175 LNNPGSTVFTEDCNVLLKLVM------------------GGKVVNELQQRLPQKGDVEML 1216

Query: 1221 NGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280
             GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    
Sbjct: 1217 CGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVL 1276

Query: 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APE 1338
            +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +
Sbjct: 1277 KLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQ 1336

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
            L +++ D    S + +    APFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++
Sbjct: 1337 LSVVVDDKKFVSNI-TRLGSAPFRTITVRDTMSDLPEIRNGASAPEIAYNGEPQSWFQRQ 1395

Query: 1399 IRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD------ 1450
            +RG+     + DHI K+M+ L   R + IP  PG+DW DLP+ +V LS G V        
Sbjct: 1396 LRGSHYQPTVRDHICKDMSPLVAARMRHIPLAPGSDWRDLPNIEVPLSDGTVAKKLRYSY 1455

Query: 1451 ------------------------------------LIPWCLPNTAKRHNQWKGLFGRLD 1474
                                                LIPWCLP+T  RHN W GL+GRL+
Sbjct: 1456 QDKKNGCSSSGALRGVCSCAEGAGKACDTMARQFNTLIPWCLPHTGNRHNHWAGLYGRLE 1515

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +HRQ+GN
Sbjct: 1516 WDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGN 1575

Query: 1535 AVPPTLAFALGRKLKEAVESK 1555
            AVPP LA A+G ++K  + +K
Sbjct: 1576 AVPPPLAKAIGLEIKLCMLAK 1596



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 107/246 (43%), Gaps = 16/246 (6%)

Query: 58  PRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDR-----PN 112
           PR +P R   C  F +      E+      ++ Q   +E +++   + + G       P 
Sbjct: 340 PRLQPPRCVQCGQFLDDVDLKYEQHPPDALEEPQMLTNEALSI-FDSNESGFESYEAFPQ 398

Query: 113 RRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRIES 169
            ++  F ++ + G   P++   I+   +L+ SG    + E  D   E GV  +  G I  
Sbjct: 399 HKITCFSVYCKRGHLCPIDTGLIEKNVELYFSGSAKAIYEE-DPSLEGGVNGKNLGPINE 457

Query: 170 WSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGN 228
           W I+GY+ G   ++  ST  A+Y  ++P+  Y  ++ L  EK    + + K + +   G+
Sbjct: 458 WWITGYDGGEKALMGFSTAFAEYILMEPSPEYAPFFVLVQEK----VYMSKIVIEFLQGS 513

Query: 229 SDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAEL 288
            D + ++L+  +  ++  S         +D ++   +F+ +Q+   D+    ++Q     
Sbjct: 514 PDATYEDLINKIETTVPPST-INVNRFTEDSLLRHAQFVVSQVESYDDAKDSDEQPIFLS 572

Query: 289 PVLVAL 294
           P +  L
Sbjct: 573 PCMRDL 578


>gi|49117032|gb|AAH72774.1| Dnmt1 protein [Xenopus laevis]
          Length = 1490

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 317/910 (34%), Positives = 476/910 (52%), Gaps = 134/910 (14%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC- 796
            I+W G+ V+  G    Y K  +  E++ +G  V V  D   +   +  +  M+E   GC 
Sbjct: 605  ISWVGDPVKTEGKKEYYLKVSIDSEILEVGDCVSVSPDNPTEPLYLARITSMWEE--GCG 662

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRK 854
            ++FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   
Sbjct: 663  QMFHAHWFCLGTDTVLGATSDPFELFLVDECEDMQLSYIHGKVNVLYKAPSDNWFMEGGT 722

Query: 855  DIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFI--LPVDSMGLGVGSCHACGT 912
            D       D               Y+ +  Y PE   F     P  +       C +C  
Sbjct: 723  DTEIKVVEDDGNT-----------YFYQLWYDPEYARFETPPKPQSTEDNKYKFCTSCAR 771

Query: 913  KESEKEKETFKVHS-----KTSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFK- 961
             +  ++KE  +V +      +   Y TA      Y V D V + P  F++    G   K 
Sbjct: 772  LDEIRQKEIPRVSNPVEELDSKICYSTATKNDVHYKVGDGVLLFPDAFSFSVKLGSPMKR 831

Query: 962  -----------------------AGRNV-GLKPYVVCQLLEIIVPK----EPKRAEVKST 993
                                    G N+   +PY + ++ EI   K    +P  A++K  
Sbjct: 832  PQRKDDVDEDLYPEYYRKSSDYIKGSNLDAPEPYRLGRIKEIFCNKRSNGKPNEADIK-- 889

Query: 994  QVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--- 1048
             +++ +F+RP++     + +Y SDI  VY+S+E  ++  +A+ G C V    D+      
Sbjct: 890  -LRIYKFYRPENTHKGMKASYHSDINMVYWSDEEAVVEFKAVQGHCTVEYGEDLTESIQE 948

Query: 1049 NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELE 1108
             +       +F E  +  +K S +  P H +     G+++      + KGK  +   + E
Sbjct: 949  YSAGGSDRFYFLEAYNAKTK-SFEDPPNHAR-----GAVNKGKGKGKGKGK-GKTPSKSE 1001

Query: 1109 VEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLM 1168
             E+     +   L TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+LN+P + +
Sbjct: 1002 NEQLNSGDKLPKLRTLDVFSGCGGLSEGFHQAGISETNWAIEMWEPAAQAFRLNNPGTTV 1061

Query: 1169 LINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
               +CN++L+ VM              + E   SL +     LP  G V+ + GGPPCQG
Sbjct: 1062 FTEDCNILLKLVM--------------SGEKTNSLGQR----LPQKGDVEMLCGGPPCQG 1103

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
            FSGMNRFN  T+SK +  +++++LS+ DY++P+YFLLENVRNFVSF K    +LTL  L+
Sbjct: 1104 FSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKYFLLENVRNFVSFKKSMVLKLTLRCLV 1163

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNY 1347
             MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA     + ++ D  
Sbjct: 1164 RMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPMFPEPLHVFAPRACTLSVVVDEK 1223

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
            +Y +  +  N + FR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IRG+    +
Sbjct: 1224 KYVSNTTRTNSSLFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIRGSQYQPI 1283

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DH+ K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1284 LRDHVCKDMSALVAARMRHIPLAPGSDWRDLPNMEVRLSDGTTSRKLRYTHHDKKNGRSG 1343

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1344 TGALRGVCCCSEGKQCDPADRQFGTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1403

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP L+ A+G
Sbjct: 1404 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLSRAIG 1463

Query: 1546 RKLKEAVESK 1555
             ++K  V ++
Sbjct: 1464 LEIKSCVLTR 1473



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 18/194 (9%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++  F ++D+ G   P +   I+   +L+ S ++ P+ + S    + GVR +  G
Sbjct: 276 DLPQHKVTCFSVYDKRGHLCPFDSGLIEKNVELYFSAVVKPIYDDSP-SLDGGVRAKKLG 334

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  + P+  Y   + L  EK    I + K + + 
Sbjct: 335 PINAWWITGFDGGEKALIGFTTAFADYILMDPSEEYSSIFALMQEK----IYMSKIVVEF 390

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKK 280
              N D S ++LL  +  ++  S     G++   F    ++   +F+  Q+   DE    
Sbjct: 391 LQNNPDVSYEDLLNKIETAVPPS-----GLNFNRFTEDSLLRHAQFVVEQVESYDEAGDS 445

Query: 281 NDQKFAELPVLVAL 294
           ++Q     P +  L
Sbjct: 446 DEQPVIVTPCMRDL 459


>gi|301609669|ref|XP_002934384.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Xenopus (Silurana)
            tropicalis]
          Length = 1492

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 312/905 (34%), Positives = 472/905 (52%), Gaps = 124/905 (13%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ ++  G    Y K  +  E++ +G  V V  D   +   +  +  M+E   G  
Sbjct: 607  ISWVGDPIKTEGKKDFYLKVSIDSEILEVGDCVSVSPDNPTEPLYLARITSMWEDACG-P 665

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V I   P  +     + 
Sbjct: 666  MFHAHWFCLGTDTVLGATSDPLELFLVDECEDMQLSYIHGKVKV-IYKAPSDNWF---ME 721

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVD--SMGLGVGSCHACGTKES 915
                 D    E+       + Y+ +  Y PE   F   P    +       C +C     
Sbjct: 722  GGTHTDIKVVEDDG-----STYFYQLWYDPEYARFETPPTPQPTEDNKYKFCTSCARLAE 776

Query: 916  EKEKETFKVHS-----KTSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFK---- 961
             +++E  +V        +   Y TA     +Y V D V + P  F++    G   K    
Sbjct: 777  IRQREMPRVSCPVEDLDSKVCYSTAIKNDVQYKVGDGVLLLPDAFSFSVKLGSPMKRPQK 836

Query: 962  --------------------AGRNV-GLKPYVVCQLLEIIVPKEPK-RAEVKSTQVKVRR 999
                                 G N+   +PY + ++ EI   K    +A     ++++ +
Sbjct: 837  KDDVDEDLYPEYYRKSSDYIKGSNLDAPEPYRLGRIKEIFCNKRSNGKANESDIKLRIYK 896

Query: 1000 FFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC---NAPAIF 1054
            F+RP++     + +Y SD+  VY+S+E  ++  +A+ G C V    D+       +    
Sbjct: 897  FYRPENTHKGVKASYHSDVNMVYWSDEEAVVDFKAVQGHCTVEYGEDLTETIQEYSAGGS 956

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
               +F E     +K S +  P H +      S  ++   + K     +   + E E+Q  
Sbjct: 957  DRFYFLEAYSAKTK-SFEDPPNHAR------SAVNKGKGKGKGKGKGKTASKSENEQQNC 1009

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
              +   L TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+LN+P + +   +CN
Sbjct: 1010 GDKLPKLRTLDVFSGCGGLSEGFHQAGISETNWAIEMWEPAAQAFRLNNPGTTVFTEDCN 1069

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
            V+L+ VM              + E   SL +     LP  G V+ + GGPPCQGFSGMNR
Sbjct: 1070 VLLKLVM--------------SGEKTNSLGQR----LPQKGDVEMLCGGPPCQGFSGMNR 1111

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
            FN  T+SK +  +++++LS+ DY++P+YFLLENVRNFVSF +    +LTL  L+ MGYQ 
Sbjct: 1112 FNSRTYSKFKNSLVVSYLSYCDYYRPKYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC 1171

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAV 1352
             FG+L+AG +GV+Q+R+RA + AA+P + LP +PEP+HVFA  A  L +++ D  +Y + 
Sbjct: 1172 TFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLHVFAPRACSLSVVV-DEKKYVSN 1230

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHI 1410
             +  N + FR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IRG+    +L DH+
Sbjct: 1231 ITRTNSSLFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIRGSQYQPILRDHV 1290

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------------ 1446
             K+M+ L   R + IP  PG+DW DLP+ +V+LS G                        
Sbjct: 1291 CKDMSALVAARMRHIPLAPGSDWRDLPNMEVRLSDGTTTRKLRYSHHDKKNGRSSTGALR 1350

Query: 1447 ----------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
                            Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMG
Sbjct: 1351 GVCSCSEGKPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 1410

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            K G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP L+ A+G ++K+
Sbjct: 1411 KQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLSKAIGSEIKK 1470

Query: 1551 AVESK 1555
             V S+
Sbjct: 1471 CVLSR 1475



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 15/200 (7%)

Query: 104 ARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREK 155
           A +DG     D P  ++  F ++D+ G   P +   I+   +L+ SG + P+ +  +   
Sbjct: 267 ANEDGFESYDDLPQHKVTCFSVYDKRGHLCPFDSGLIEKNVELYFSGYVKPIYDD-NPSL 325

Query: 156 EKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
           + GVR +  G I +W I+G++ G   +I  +T  ADY  + P+  Y   + L  EK    
Sbjct: 326 DGGVRAKKLGPINAWWITGFDGGEKALIGFTTAFADYILMDPSEEYSSIFALMQEK---- 381

Query: 215 IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
           I + K + +    N D S ++LL  +  ++  S         +D ++   +F+  Q+   
Sbjct: 382 IYMSKIVVEFLQNNPDVSYEDLLNKIETTVPPSG-LNFNRFTEDSLLRHAQFVVEQVESY 440

Query: 275 DETSKKNDQKFAELPVLVAL 294
           DE    ++Q     P +  L
Sbjct: 441 DEAGDSDEQPVIVTPCMRDL 460


>gi|23306229|emb|CAD42182.3| DNA methyltransferase [Paracentrotus lividus]
          Length = 1613

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 325/952 (34%), Positives = 489/952 (51%), Gaps = 127/952 (13%)

Query: 692  EANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSG- 750
            EA+E++ ++E   +   + ++EK   + R++   +      +  + ++TW G+ +  +  
Sbjct: 679  EADEND-IDEMDNSSNKENKDEKKAKKGRKLETPL-----KKKKRAKVTWLGDPIEVTEE 732

Query: 751  LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHT 810
             A YK A++  E +  G  VL+  D+  +   +  V YM++ + G  +FH      GS T
Sbjct: 733  RAYYKAAMLDDEKIENGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHRQWFVYGSET 792

Query: 811  VLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAE 868
            VLG T++  EVF  ++C+D  L  +  K TV+    S  W      D    D V +   E
Sbjct: 793  VLGETSDPLEVFPIDECQDTYLGSVNAKCTVISGAPSHDWSMIGGIDDPETDHVIK---E 849

Query: 869  ERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSK- 927
            +  K     ++Y   L   E     + P D       SC  C   E  +EKET +  +K 
Sbjct: 850  DDGKTFFYQKWYDPELARFEDYEVLMAPYDIPAHRFCSC--CLNNERAQEKETARPGAKL 907

Query: 928  -----------TSFVYGTAEYFVHDYVYISPHHFTWD----------------------- 953
                       +S  Y   E+ + D VY+ P  F+++                       
Sbjct: 908  EDQDDSSKVLYSSCHYKGNEFQIGDGVYLLPEAFSFNIKQKIVTKKPVSKKDVDEDLYPE 967

Query: 954  --KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK- 1010
              +   E  K       +P+ V +++ I   K        + +++V + +RP+D    + 
Sbjct: 968  NYRKSSEYVKGSNLECPEPFRVGKIISIYTTK-----SSSTVRLRVNKMYRPEDTHKGRT 1022

Query: 1011 -AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA--PAIFQHIFFCEHLHDPS 1067
             AY +D+  +Y+SEE  +  +E + GKC V    D+        A   H F+    +D  
Sbjct: 1023 AAYQADLNVLYWSEEEAVTELEVVQGKCSVVCAEDLNVSTTEYSAGGPHKFYFREAYDSE 1082

Query: 1068 KGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
            +   +  P+    +  S  +  +   + K     +   E E EK+   +  N L  LD+F
Sbjct: 1083 RKCFEDPPS----KSRSTRMKGKGKGKGKGKAKGKMAVEKEEEKESTETPFNKLKCLDVF 1138

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDA 1187
            AGCGGLSEG  Q+GI  + WAIE EEPA +A++LN+P S +  ++CN +LR VM+     
Sbjct: 1139 AGCGGLSEGFHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQ----G 1194

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM 1247
            E    T +               LP  G V+ + GGPPCQGFSGMNRFN   +SK +  +
Sbjct: 1195 EKTSRTGQ--------------KLPQKGDVELLCGGPPCQGFSGMNRFNSREYSKFKNSL 1240

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
            I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGYQ  FGIL+AG +GV 
Sbjct: 1241 ISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVP 1300

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
            Q+R+RA I AA+P + LP +PEP+HVF+  A  L +M+ +  +  +       AP+R +T
Sbjct: 1301 QTRRRAIILAAAPGEKLPFYPEPLHVFSTRACSLSVMIGEK-KIESNNQWCLSAPYRTIT 1359

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQ 1423
            VRD++ DLP + NGA K  + Y  +P S FQK+IRGN    +L+DHI K+M+ L   R +
Sbjct: 1360 VRDSMSDLPTINNGAQKLEISYDGEPQSDFQKKIRGNQYQPILSDHICKDMSSLVAARMK 1419

Query: 1424 KIPKRPGADWHDLPDEKVKLSTG------------------------------------- 1446
             IP  PG+DW DLP+  V L  G                                     
Sbjct: 1420 HIPLAPGSDWRDLPNIPVTLKDGTTCRKLRYTHRDKKNGKSSTGALRGVCSCAEGDACDP 1479

Query: 1447 ---QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRI 1503
               Q   LIPWCLP+T   HN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+
Sbjct: 1480 SDRQFSTLIPWCLPHTGNWHNNWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRV 1539

Query: 1504 LTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            ++VRECARSQGFPD+Y+F GSI  KHRQIGNAVPP +A A+G ++K  +++K
Sbjct: 1540 VSVRECARSQGFPDTYRFFGSILDKHRQIGNAVPPPMAAAIGMEIKVCLQTK 1591



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +R   ++ +F ++D++      +  M+E + +L+ SG + P+ +  +   E G+  +  G
Sbjct: 389 ERLQHKITNFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDD-NPSTEGGIPTKRIG 447

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G   +I  ST  A+Y  + P+  YK ++    EK    I + K L + 
Sbjct: 448 PINEWYTTGFDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEK----IYMSKILIEF 503

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++LL  V  ++    C R     +D ++   +F+  Q+   D+ + +++  
Sbjct: 504 LQNNVDPVYEDLLTQVETTVPPEGCNR---FTEDSLLRHAQFVVEQVESYDDAADRDEVL 560

Query: 285 FAELPVLVAL 294
              +P +  L
Sbjct: 561 LITMPCMRDL 570


>gi|291238124|ref|XP_002738981.1| PREDICTED: DNA (cytosine-5-)-methyltransferase [Saccoglossus
            kowalevskii]
          Length = 1294

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 317/955 (33%), Positives = 489/955 (51%), Gaps = 146/955 (15%)

Query: 695  EDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLALY 754
            ED+E E+   N++++         +++ +  +   IK  + K ++ W G+ + +     Y
Sbjct: 377  EDDECEDLERNDDEN---------QKKPTKKITTPIKKGNRKTKMKWIGKPIAEENKKKY 427

Query: 755  KKAI-VHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLG 813
             +++ ++ E +S+G AV V   +  +  ++ FV YM+E     ++FH     RG  TVLG
Sbjct: 428  YRSVRINDEEISIGDAVSVSPQDPTKPVLLAFVTYMWEDGNKDQMFHAKWYCRGVDTVLG 487

Query: 814  NTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKDIANADKVDRARAEERK 871
              A+  EVF  ++C D  L+ +     +  ++ P  W     +++ N    D        
Sbjct: 488  EMADPLEVFAVDECEDTALEYVMGKSKIMYKAPPENWSMLGGEEVENFITDDDGNT---- 543

Query: 872  KKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGTKESEKEKETFKVHSK- 927
                   +Y +  Y P+   F  +PV      + S   C +C   E  ++ ET  V  K 
Sbjct: 544  -------FYYQKWYDPDCARFEDIPVTQRPDDMPSHRYCDSCQRMEQIRKNETPHVSEKL 596

Query: 928  ------TSFVY------GTAEYFVHDYVYISPHHFTWD---------------------- 953
                     VY      G  +Y V D  Y+ P  F ++                      
Sbjct: 597  EEDKQNPKVVYYSVLSKGGLDYRVGDSCYLLPGSFYFNVKPAPPPSKVSRKENVDEEVYP 656

Query: 954  ---KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDI--SA 1008
               +   E  K       +P+ + ++++I   K P +  V+  ++KV +F+RP++     
Sbjct: 657  EYYRKTSEYVKGSNIECPEPFRIGRIIKIFTKKSPNKL-VEEIKLKVVKFYRPENTHKGV 715

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQ---HIFFCEHLHD 1065
              +Y SD+  +Y+S+E   I    I GKC V  + ++         +     +F E    
Sbjct: 716  TASYTSDLNLLYWSDEEAEIAAYDIQGKCTVMFEEELNESVQEYTRKGRDRFYFLEAYCS 775

Query: 1066 PSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQEN----HL 1121
             SK   ++ P+  +     G    +  S             +EV KQ  A ++N     L
Sbjct: 776  KSK-EFEEPPSRARTIKGKGKGKGKGKS---------STPVIEV-KQVAAVKDNFQYRKL 824

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
             +LD+FAGCGGLSEG  QSG++ + WAIE EEPA +AF+LN+P   +  ++CN +LR VM
Sbjct: 825  RSLDVFAGCGGLSEGFHQSGVAESTWAIEKEEPAAQAFRLNNPGCTVFTDDCNTLLRLVM 884

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
            +  G+  + V                   LP  GQV+ + GGPPCQGFSGMNRFN   +S
Sbjct: 885  D--GETTNSVG----------------QKLPQKGQVELLCGGPPCQGFSGMNRFNSREYS 926

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
            K +  +++++LS+ DY++P++FLLENVRNFVSF K    +LT+ SLL MGYQ  FG+++A
Sbjct: 927  KFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKKSMVLKLTMRSLLSMGYQCTFGVVQA 986

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS-DNYQYSAVRSTANGAP 1360
            G +GV+Q+R+RA I AA+P + LP +PEP HVF+     + ++ D  +Y +  +    AP
Sbjct: 987  GLYGVAQTRRRAIILAAAPGEKLPFYPEPAHVFSPRACPLSVTIDEKKYESNMARVWSAP 1046

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG--NMAVLTDHISKEMNELN 1418
            +R +TVRD + DLP + NG +K  M Y  +  + +QK IRG  +  +L DHI KEM+ L 
Sbjct: 1047 YRTITVRDALSDLPEIRNGYNKLEMSYDREAQNGYQKAIRGSQHQPILRDHICKEMSALV 1106

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTG-------------------------------- 1446
              R + IP  PG+DW DLP+  V+LS G                                
Sbjct: 1107 EGRMRHIPLAPGSDWRDLPNIAVRLSDGNTCKKLRYLHPDKKNGKGPNGQLRGVCACAMN 1166

Query: 1447 --------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
                    Q   LIPWCLP+T  RHN W GL+GR++W+G F T++T+P+PMGK G   HP
Sbjct: 1167 KPCDPTDRQFNTLIPWCLPHTGNRHNNWAGLYGRVEWDGYFSTTVTNPEPMGKQGRVLHP 1226

Query: 1499 DQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            +Q R+++VRECARSQGFPD+Y+F+G+I  KHRQ+GNAVPP LA  LG ++K+  E
Sbjct: 1227 EQHRVVSVRECARSQGFPDTYRFYGTILDKHRQVGNAVPPPLAKHLGLEIKKCAE 1281


>gi|8132067|gb|AAF73200.1|AF152342_1 DNA-(cytosine-5)-methyltransferase [Xiphophorus maculatus x
            Xiphophorus hellerii]
          Length = 1503

 Score =  514 bits (1325), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 370/1284 (28%), Positives = 615/1284 (47%), Gaps = 226/1284 (17%)

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
            D LP+  + ++S+Y+    L   +   ++  +++++      K I D+  G         
Sbjct: 282  DHLPQHRITNFSVYDKHGHLCPFDSGLIE--KNVELYFSCYVKPIYDDSPGL-------- 331

Query: 477  CTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYE 534
             TSGV        F   L  I  W I    G     I   T  A Y L +PS++YAP + 
Sbjct: 332  -TSGV--------FARKLGPINAWWITGFDGGEKALIGFTTSFADYILMEPSEEYAPIFA 382

Query: 535  PVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAV------ER 588
             + +   ++  ++  L++    +   + D++ ++           +  PA +      E 
Sbjct: 383  LMQEKIYMSKIVVEFLQKNPDAT---YEDLLNKIE---------TTVPPAGLNFNCFTED 430

Query: 589  YVVVHGQIVLQLFAEYPD--EQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNP 646
             ++ H Q V++    Y D  +  ++   +   M+ + +       + K++  + +   +P
Sbjct: 431  TLLRHAQFVVEQVESYDDAGDSDEQPIIVTPCMRDLIKLAGV--TLGKRRAARRQTIRHP 488

Query: 647  ----RASMGPVVVSKRKVMQATTTRLINRIWGEYYSNY---------------------- 680
                + S GP         +ATTT++  +I+  ++++                       
Sbjct: 489  TKIEKDSKGPT--------KATTTKMAYQIFDAFFADQIEQNDKEGGVKRQRCGVCEVCQ 540

Query: 681  SPE---------------DGKEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCS 725
            SP+                GK + AC+      +  +   ++++ EEE + +E+ +    
Sbjct: 541  SPDCGKCTACKDMIKFGGSGKSKQACKQRGCPNLAVKEAEDDENIEEEDVPAEKTK---K 597

Query: 726  VAVQIKSRSTKKEITWEGECVRKSG-LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIY 784
            V    K R T+ ++ W GE V  +G    YKK  ++ EV+ +G  V V  ++      + 
Sbjct: 598  VLQTKKRRQTQSKLAWVGEPVETAGKRQYYKKVSLNDEVLEVGDCVSVSSEDPSTPLYLA 657

Query: 785  FVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVD 842
             +  ++E   G K+FH     RG HTVLG +++  E+ + ++C D+ L  +  K  V+  
Sbjct: 658  RITSLWEDNNG-KMFHAHWFLRGIHTVLGESSDPLELVIVDECEDMLLNYVQGKVNVMYK 716

Query: 843  IRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV--DSM 900
              S  W  +   D+      D  ++           ++ +  Y  E   F   P    S+
Sbjct: 717  APSNNWFMEGGVDVDLKVIDDDGKS-----------FFYQFWYDTEFARFETPPKTEQSV 765

Query: 901  GLGVGSCHACGTKESEKEKETFKVH-------SKTSFVYGTA-----EYFVHDYVYISPH 948
               +  C +C   +   E+E  +         S +   Y  A     ++ V D VY+ P 
Sbjct: 766  DCKLRFCGSCARTKERDEQEVPRAFESLENEDSDSKAPYALACFKGEQFRVGDSVYMPPE 825

Query: 949  HFTWDKAEGETFK------------------------AGRNV-GLKPYVVCQLLEIIVPK 983
             F++        K                         G N+   +P+ V ++ EI   +
Sbjct: 826  AFSFSVKPASPVKRSHRKEDVDEDLYPEYYRKSSDYIKGSNLDAPEPFRVGRIKEIFCHR 885

Query: 984  EPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR 1040
                +++    ++++ +F+RP++     + +Y +DI ++Y+S+E  ++ +  + G+C+V 
Sbjct: 886  RSNGKSDTSEVKLRLYKFYRPENTHRGVKASYHTDINQLYWSDEEVMVSMSEVLGRCQVE 945

Query: 1041 KKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASR 1094
               D+       +   P  F   +F E  +  SK S +  P H +   S           
Sbjct: 946  YAEDLNESVQDYSSGGPDRF---YFLEAYNAKSK-SFEDPPNHAR---SCVHKGKGKGKG 998

Query: 1095 RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
            + KGK    ++  E   +  A +     TLD+F+GCGGLSEG  Q+GIS T WAIE  EP
Sbjct: 999  KGKGKGKASQEPQESRTEPQALKVPKYRTLDVFSGCGGLSEGFHQAGISETLWAIEMWEP 1058

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            A +AF+LN+P + +   +CNV+L+ VM              + E   SL +     LP  
Sbjct: 1059 AAQAFRLNNPGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQK 1100

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G V+ + GGPPCQGFSGMNRFN  T+SK +  +++++LS+ DY++P++FLLENVRNFVSF
Sbjct: 1101 GDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSF 1160

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
                  +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVF
Sbjct: 1161 KNSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPRYPEPLHVF 1220

Query: 1335 AAPELKIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVS 1393
            A     + ++ D  +Y +  +  NG  +R +TVRDT+ DLP + NGA+   + Y  +P S
Sbjct: 1221 APRACSLTVAVDEKKYVSNVTRGNGGIYRTITVRDTMSDLPEIRNGAASLEISYNGEPQS 1280

Query: 1394 WFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----- 1446
            WFQ++IRG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G     
Sbjct: 1281 WFQRQIRGSQYQPILRDHICKDMSALVEARMRHIPLAPGSDWRDLPNIEVRLKDGTTTKK 1340

Query: 1447 -----------------------------------QVVDLIPWCLPNTAKRHNQWKGLFG 1471
                                               Q   LIPWCLP+T  RHN W GL+G
Sbjct: 1341 LRYTHHDKKNGRSSTGALRGVCTCAGGKTCDSADRQFNTLIPWCLPHTGNRHNHWAGLYG 1400

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL+W+G F T++T+P+PMGK G   H +Q R+++VRECARSQGFPD+Y+F G+I  KHRQ
Sbjct: 1401 RLEWDGFFSTTVTNPEPMGKQGRVLHAEQHRVVSVRECARSQGFPDTYRFFGNILDKHRQ 1460

Query: 1532 IGNAVPPTLAFALGRKLKEAVESK 1555
            +GNAVPP L+ A+G ++K+ V  +
Sbjct: 1461 VGNAVPPPLSRAIGLEIKKCVSDR 1484



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  R+ +F ++D++G   P +   I+   +L+ S  + P+ + S      GV     G I
Sbjct: 285 PQHRITNFSVYDKHGHLCPFDSGLIEKNVELYFSCYVKPIYDDSP-GLTSGVFARKLGPI 343

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
            +W I+G++ G   +I  +T  ADY  ++P+  Y   + L  EK      V + L K   
Sbjct: 344 NAWWITGFDGGEKALIGFTTSFADYILMEPSEEYAPIFALMQEKIYMSKIVVEFLQK--- 400

Query: 227 GNSDCSIDELLAGVVRSMSGS----KCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKND 282
            N D + ++LL  +  ++  +     CF      +D ++   +F+  Q+   D+    ++
Sbjct: 401 -NPDATYEDLLNKIETTVPPAGLNFNCF-----TEDTLLRHAQFVVEQVESYDDAGDSDE 454

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 455 QPIIVTPCMRDL 466


>gi|443691961|gb|ELT93682.1| hypothetical protein CAPTEDRAFT_160905 [Capitella teleta]
          Length = 1334

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 311/907 (34%), Positives = 478/907 (52%), Gaps = 116/907 (12%)

Query: 730  IKSRSTKKEITWEGECV-RKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEY 788
            +K +  K ++ WEGE V +KS    Y  A ++GE++S+G  V V+ D+      I  ++Y
Sbjct: 383  LKFKKQKSQLEWEGEPVLKKSKKTFYASARLNGEILSVGDYVSVKPDDPSTPVYIAQIKY 442

Query: 789  MFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPW 848
             +E + G  +FH     RGS TVLG  ++ +E+F+ ++C++ +L    + V V   +   
Sbjct: 443  FYEDSDGTMMFHAQWYSRGSDTVLGEASDPKELFVVDECQNTQLAFCVEAVKVHYLTPAD 502

Query: 849  GHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP-VDSMGLGVGSC 907
              Q    +   D  DR    + +++G    ++ K LY  +   F  +P V+++   V  C
Sbjct: 503  NWQ----MIGGD--DRGMNLDDQEEGC-AFFFQKWLYDEDLARFEDVPIVENVEKDVTFC 555

Query: 908  HACGTKESEKEKETFKVHSKTSFV-----------YGTAEYFVHDYVYISPHHFTW---- 952
             +C     +K+KE+  +  K               Y    Y V D VY+ P  + +    
Sbjct: 556  SSCVRLAEKKKKESPLLGEKIDSSKSSRCSFSSVNYWGESYSVGDCVYVDPEAYGFHIKP 615

Query: 953  -------------DKAEGETFKAGRNV------GLKPYVVCQLLEIIVPKEPKRAEVKST 993
                         D+   E ++ G  V         P+ + ++ EI V     ++ V + 
Sbjct: 616  VNHKKSKHEKPCDDELYPEAYRKGDYVKGSNLQNPDPFRIAKIQEIYV-----KSGVSTA 670

Query: 994  QVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKND--IPACN 1049
             +  +   RP++    +     +D+  +Y+S+E     +  I GKC+V   +D  +P  +
Sbjct: 671  VLYAQYLCRPENTHKGSHGTSHTDLNMLYWSDEDGKAALSQIWGKCQVVHWDDLQVPLED 730

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
              A     F+   +++ +    ++ P+  + + S G    +   + K     E   E E 
Sbjct: 731  YFAAGDDRFYFSEMYNTNTKEFEEPPSECRSQVSKGKGKGKGKGKGKGKSSEETPREPE- 789

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
              +  A     L  LD+FAGCGGLSEG  Q+GI+ + WAIE EEPA ++F+LN+P + + 
Sbjct: 790  PTEANAQPITRLRGLDVFAGCGGLSEGFHQAGIAESCWAIEKEEPAAQSFRLNNPGATVF 849

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
             ++CN++L+AVME                       +V   LP  G+V+ + GGPPCQGF
Sbjct: 850  TDDCNLLLKAVME------------------GQTVNDVGQKLPQKGEVELLCGGPPCQGF 891

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN   +S  +  +I ++LS+ DY++P++FLLENVRNFVSF +    +L L  LL 
Sbjct: 892  SGMNRFNSREYSMFKNSLIASYLSYCDYYRPKFFLLENVRNFVSFKRSMVLKLALRCLLR 951

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV Q+R+RA I AA+P + LP +PEP+HVFA    +L + + D  
Sbjct: 952  MGYQCTFGVLQAGNYGVPQTRRRAIILAAAPGEKLPFYPEPLHVFAPRGMQLSVQVGDK- 1010

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG--NMAV 1405
            +Y++     + APFR ++VRD + DLP V NGA    + Y  +  S FQ+ IRG  +  V
Sbjct: 1011 RYNSCVQRMSSAPFRTISVRDAMSDLPEVKNGAKAEKISYSVEAQSHFQRMIRGHQHQPV 1070

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
              DHI K+ N L   R Q IP  PGADW DLP+ +V+LS G                   
Sbjct: 1071 CRDHICKDFNPLVHARMQHIPLYPGADWRDLPNIEVRLSDGSKCKKLCYTHRDKKNGRSP 1130

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1131 SGALRGVCQCADSGSCDAMDRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1190

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G+IQ +HRQ+GNAVPP +A A+G
Sbjct: 1191 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNIQDRHRQVGNAVPPPMAKAIG 1250

Query: 1546 RKLKEAV 1552
             ++K+ V
Sbjct: 1251 SEIKKCV 1257



 Score = 47.8 bits (112), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +RP  ++ +F ++D+N    P +   I+   +L+ SG + P+ +  +   E G+     G
Sbjct: 62  ERPQHKITNFTVYDKNMHVCPFDCGLIEKNTELYFSGSLKPIYDE-NPSPEDGILTTKLG 120

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G S +I  +T  A+Y  + P+  Y     +  EK    I + K + + 
Sbjct: 121 PINEWYTAGFDGGESALIGFTTAFAEYILMTPSDLYAPTMTVVQEK----IYLSKIVIEF 176

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              +++ + ++LL  +  ++       G    +D ++   ++I +Q+   D   +  D  
Sbjct: 177 LSDDTEATYEDLLNKISTTVPPQGMTSG--FTEDSLLRHAQWIVDQVESYDNAGEDEDIL 234

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 235 LIATPCMRAL 244


>gi|410902659|ref|XP_003964811.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Takifugu rubripes]
          Length = 1493

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 312/915 (34%), Positives = 475/915 (51%), Gaps = 130/915 (14%)

Query: 731  KSRSTKKEITWEGECVRKSG-LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            + + T+  +TW GE V   G    YK+  ++ EV+ +G  V V  ++     ++  +  +
Sbjct: 594  RKKQTECNLTWIGEPVLTEGKRNYYKQVSINDEVLEVGDCVSVSSEDPSVPLILARITSL 653

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVP 847
            +E T G K+FH     RG HTVLG  ++  E+ L + C D++L  +  K  ++    S  
Sbjct: 654  WEDTHG-KMFHAHWFMRGIHTVLGECSDPLELVLVDDCEDMQLNYVQGKVNIMYKAPSNN 712

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP--VDSMGLGVG 905
            W  +   D+      D  ++           ++ +  Y PE   F   P    S      
Sbjct: 713  WFMEGGLDVDIKVIADDGKS-----------FFYQFWYDPEFARFETPPKTTPSEDCKFK 761

Query: 906  SCHACGTKESEKEKETFKVH--------SKTSFV---YGTAEYFVHDYVYISPHHFTW-- 952
             C +C     +KE+E   V         SK  F    +   ++ V D VY+ P  F +  
Sbjct: 762  FCSSCVRTTEQKEQEIPHVFELLDEDSDSKALFALACFKGEQFKVGDSVYLPPDAFNFSV 821

Query: 953  ------------DKAEGETFK----------AGRNV-GLKPYVVCQLLEIIVPK----EP 985
                        D  + E +            G N+    P+ + ++ EI   K    +P
Sbjct: 822  KPASPMKRSHRKDDVDEELYPEYYRKSSDYIKGSNLDAPDPFRIGRIKEIFCHKRSNGKP 881

Query: 986  KRAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKN 1043
              +EVK   +++ +F+RP++     +  Y +DI ++Y+S+E   + +  + G+C+V    
Sbjct: 882  DTSEVK---LRLYKFYRPENTHKGVKATYHTDINQLYWSDEEVTVDMAQVLGRCQVEYGE 938

Query: 1044 DI--PACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCI 1101
            D+  P     +     F+    ++    S +  P H +   S+          + KGK  
Sbjct: 939  DLNEPVQEYSSGGPDRFYFLEAYNAKTKSFEDPPNHAR---SAAHKGKGKGKGKGKGKGK 995

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
              +D  +   +    +     TLD+F+GCGGLSEG  Q+GIS + WAIE  EPA +AF+L
Sbjct: 996  AAQDSHDTPNEPQMPKVPKYRTLDVFSGCGGLSEGFHQAGISESLWAIEMWEPAAQAFRL 1055

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN 1221
            N+P + +   +CN++L+ VM              + E   SL +     LP  G V+ + 
Sbjct: 1056 NNPGATVFTEDCNILLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLC 1097

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            GGPPCQGFSGMNRFN  T+S  +  +++++LS+ DY++P++FLLENVRNFVSF      +
Sbjct: 1098 GGPPCQGFSGMNRFNSRTYSAFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKSSMVLK 1157

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APEL 1339
            LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A  L
Sbjct: 1158 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEELPRYPEPLHVFAPRACSL 1217

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
             +++ D    S V +  NG  +R +TVRDT+ DLP + NGAS   + Y  +P SWFQ++I
Sbjct: 1218 NVVVDDKKFVSNV-TRGNGGIYRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQI 1276

Query: 1400 RGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------- 1446
            RG     +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G           
Sbjct: 1277 RGTQYQPILRDHICKDMSALVEGRMRHIPLAPGSDWRDLPNIEVRLRDGTMTKKLRYTHL 1336

Query: 1447 -----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                                         Q   LIPWCLP+T  RHN W GL+GRL+W+G
Sbjct: 1337 DKKNGRSSTGALRGVCTCAGGTPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDG 1396

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
             F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G+I  KHRQ+GNAVP
Sbjct: 1397 FFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNILDKHRQVGNAVP 1456

Query: 1538 PTLAFALGRKLKEAV 1552
            P L+ A+G ++K+ V
Sbjct: 1457 PPLSRAIGLEIKKCV 1471



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 31/297 (10%)

Query: 19  DSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRI 78
           DS+  +N+ +K    V E ++    + E  +K S +  +P  +P   A     K +  R 
Sbjct: 170 DSTNGQNEDKKEDDNVEEAREEKRLKVESNEKXSTEEIKPETKPVPTAKTPPPKCQDCR- 228

Query: 79  SEKSYLVEAKKDQYADDEIVAVG------------LTARQDG-----DRPNRRLNDFILH 121
               YL ++    +  D   A+               + +DG     D P  ++ +F ++
Sbjct: 229 ---QYLDDSDLKFFQGDPDNALDEPEMLTDERLSLFDSNEDGFESYEDLPQHKITNFSVY 285

Query: 122 DENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG 178
           D+ G   P +   I+   +L+ S ++ P+ + +    + GV  +  G I +W I+G++ G
Sbjct: 286 DKRGHLCPFDSGLIEKNVELYFSCVVKPIYDDNPC-LDGGVPAKKLGPINAWWITGFDGG 344

Query: 179 -SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELL 237
              +I  +T  ADY  +  +  Y   + L  EK      V + L K      +  ++++ 
Sbjct: 345 EKALIGFTTAFADYILMHSSEDYAPIFALMQEKIYMSKIVVEFLQKNREATYEDLLNKIE 404

Query: 238 AGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
             V  +     CF      +D ++   +F+  Q+   DE    ++++    P +  L
Sbjct: 405 TTVPPAGLNFNCF-----TEDTLLRHAQFVVEQVESYDEAGDSDEERIIVTPCMRDL 456


>gi|148225023|ref|NP_001084021.1| DNA (cytosine-5-)-methyltransferase 1 [Xenopus laevis]
 gi|1731732|dbj|BAA11458.1| DNA (cytosine-5-)-methyltransferase [Xenopus laevis]
          Length = 1490

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/910 (34%), Positives = 474/910 (52%), Gaps = 134/910 (14%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC- 796
            I+W G+ V+  G    Y K  +  E++ +G  V V  D   +   +  +  M+E   GC 
Sbjct: 605  ISWVGDPVKTEGKKEYYLKVSIDSEILEVGDCVSVSPDNPTEPLYLARITSMWEE--GCG 662

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRK 854
            ++FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   
Sbjct: 663  QMFHAHWFCLGTDTVLGATSDPLELFLVDECEDMQLSYIHGKVNVLYKAPSDNWFMEGGT 722

Query: 855  DIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFI--LPVDSMGLGVGSCHACGT 912
            D       D               Y+ +  Y PE   F     P  +       C +C  
Sbjct: 723  DTEIKVVEDDGNT-----------YFYQLWYDPEYARFETPPKPQSTEDNKYKFCTSCAR 771

Query: 913  KESEKEKETFKVHS-----KTSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFK- 961
             +  ++KE  +V +      +   Y TA      Y V D V   P  F++    G   K 
Sbjct: 772  LDEIRQKEIPRVSNPVEELDSKICYSTATKNDVHYKVGDGVLHFPDAFSFSVKLGSPMKR 831

Query: 962  -----------------------AGRNV-GLKPYVVCQLLEIIVPK----EPKRAEVKST 993
                                    G N+   +PY + ++ EI   K    +P  A++K  
Sbjct: 832  PQRKDDVDEDLYPEYYRKSSDYIKGSNLDAPEPYRLGRIKEIFCNKRSNGKPNEADIK-- 889

Query: 994  QVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--- 1048
             +++ +F+RP++     + +Y SDI  VY+S+E  ++  +A+ G C V    D+      
Sbjct: 890  -LRIYKFYRPENTHKGMKASYHSDINMVYWSDEEAVVEFKAVQGHCTVEYGEDLTESIQE 948

Query: 1049 NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELE 1108
             +       +F E  +  +K S +  P H +     G+++      + KGK  +   + E
Sbjct: 949  YSAGGSDRFYFLEAYNAKTK-SFEDPPNHAR-----GAVNKGKGKGKGKGK-GKTPSKSE 1001

Query: 1109 VEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLM 1168
             E+     +   L TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+LN+P + +
Sbjct: 1002 NEQLNSGDKLPKLRTLDVFSGCGGLSEGFHQAGISETNWAIEMWEPAAQAFRLNNPGTTV 1061

Query: 1169 LINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
               +CN++L+ VM              + E   SL +     LP  G V+ + GGPPCQG
Sbjct: 1062 FTEDCNILLKLVM--------------SGEKTNSLGQR----LPQKGDVEMLCGGPPCQG 1103

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
            FSGMNRFN  T+SK +  +++++LS+ DY++P+YFLLENVRNFVSF K    +LTL  L+
Sbjct: 1104 FSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKYFLLENVRNFVSFKKSMVLKLTLRCLV 1163

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNY 1347
             MGYQ  FG+L+AG +GV+Q+R+RA + AA+P + LP +PEP+HVFA     + ++ D  
Sbjct: 1164 RMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLHVFAPRACTLSVVVDEK 1223

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
            +Y +  +  N + FR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IRG+    +
Sbjct: 1224 KYVSNTTRTNSSLFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIRGSQYQPI 1283

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------- 1446
            L DH+ K+M+ L   R + IP  PG+DW DLP+ +V+LS G                   
Sbjct: 1284 LRDHVCKDMSALVAARMRHIPLAPGSDWRDLPNMEVRLSDGTTSRKLRYTHHDKKNGRSG 1343

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+  F T++T+
Sbjct: 1344 TGALRGVCCCSEGKQCDPADRQFGTLIPWCLPHTGNRHNHWAGLYGRLEWDSFFSTTVTN 1403

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP L+ A+G
Sbjct: 1404 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLSRAIG 1463

Query: 1546 RKLKEAVESK 1555
             ++K  V ++
Sbjct: 1464 LEIKSCVLTR 1473



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++  F ++D+ G   P +   I+   +L+ S ++ P+ + S    + GVR +  G
Sbjct: 276 DLPQHKVTCFSVYDKRGHLCPFDSGLIEKNVELYFSAVVKPIYDDSP-SLDGGVRAKKLG 334

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  + P+  Y   + L  EK    I + K + + 
Sbjct: 335 PINAWWITGFDGGEKALIGFTTAFADYILMDPSEEYSSIFALIEEK----IYMSKIVVEF 390

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D S ++LL  +  ++  S         +D ++   +F+  Q+   DE    ++Q 
Sbjct: 391 LQNNPDVSYEDLLNKIETAVPPS-ALNFNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQP 449

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 450 VIVTPCMRDL 459


>gi|190337769|gb|AAI63893.1| Dnmt1 protein [Danio rerio]
          Length = 1500

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 316/914 (34%), Positives = 472/914 (51%), Gaps = 139/914 (15%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE ++  G    Y K  V  EV+ +G  V V  D  D    +Y          G K
Sbjct: 611  ISWVGEPLKTEGKKEYYMKVRVENEVLEVGDCVSVSPD--DPSHPLYLARITALWDDGEK 668

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH     RG+ TVLG +++  E+FL ++C D++L  I  K  V     S  W  +   D
Sbjct: 669  MFHAHWFCRGTDTVLGESSDPLELFLVDECEDMQLSFIHGKVNVFYKAPSENWYMEGGMD 728

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP---VDSMGLGVGSCHACGT 912
                        E+ K      E +   LY+    A F  P     S       C +C T
Sbjct: 729  ------------EDIKVIDDDGESFFYQLYYEGECARFETPPKVTPSEDCKYKFCASC-T 775

Query: 913  KESEKEKETF--------KVHSKTSFVYGTA-----EYFVHDYVYISPHHFTW------- 952
            +  E+E E+            S +   YG       +Y V D VY+ P  F +       
Sbjct: 776  RNEEREAESVPHAYEPLEDEESDSKVFYGLVNYKGEQYKVGDSVYLPPEAFNFVVKAASP 835

Query: 953  -------DKAEGETFK----------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
                   D  + + +            G N+   +P+ + ++ EI   K     +  +T+
Sbjct: 836  VKRSHRKDDVDEDLYPEYYRKSSDYIKGSNLDAPQPFRIGRIKEIFCNKR-SNGKPDTTE 894

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++     + AY SDI ++Y+S+E   + +  +  +C V    D+     
Sbjct: 895  IKLRLYKFYRPENTHKGPKGAYHSDINQLYWSDEEATVSMTEVLTRCRVEYAEDLVESVQ 954

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
              +   P  F   +F E  +  +K S +  P H +   + G    +   + K     +  
Sbjct: 955  DYSNKGPDRF---YFLEAYNAKTK-SFEDPPNHARSAVNKGKGKGKGKGKGKGKAAPQEP 1010

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             + E ++         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P
Sbjct: 1011 QDQEAQEPAVPK----LRTLDVFSGCGGLSEGFHQAGISETHWAIEMWDPAAQAFRLNNP 1066

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +   +CNV+L+ VM              + E   SL +     LP  G V+ + GGP
Sbjct: 1067 GTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLCGGP 1108

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  +++++LS+ DY++P++FLLENVRNFVSF +    +LTL
Sbjct: 1109 PCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKRSMVLKLTL 1168

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA     + ++
Sbjct: 1169 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPRYPEPLHVFAPRACSLSVA 1228

Query: 1345 -DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN- 1402
             D  +Y +  +  NG  +R +TVRDT+ DLP + NGA+   + Y  +P SWFQ++IRG+ 
Sbjct: 1229 VDEKKYVSNVTRGNGGIYRTITVRDTMSDLPEIRNGAAALEISYNGEPQSWFQRQIRGSQ 1288

Query: 1403 -MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------- 1446
               +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G               
Sbjct: 1289 YQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLRDGTTTKKLRYTHSDKKN 1348

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1349 GRSGTGALRGVCSCSEGKQCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1408

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G++  KHRQ+GNAVPP L+
Sbjct: 1409 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNVLDKHRQVGNAVPPPLS 1468

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K+ V  K
Sbjct: 1469 KAIGLEVKKCVLEK 1482



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++ +F ++D+ G   P +   I+   +L+ S  + P+ + +    + GV  +  G
Sbjct: 282 DLPQHKITNFSVYDKRGHLCPFDSGLIEKNVELYFSCAVKPIYDDNPC-MDGGVPAKKLG 340

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  + P+  Y   + L  EK      V + L K 
Sbjct: 341 PINAWWITGFDGGEKALIGFTTAFADYILMDPSEEYSAIFALMQEKIYMSKIVVEFLQK- 399

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++LL  +  ++  +         +D ++   +F+  Q+   DE    ++Q 
Sbjct: 400 ---NQDATYEDLLNKIETTVPPAG-LNFNRFTEDTLLRHAQFVVEQVESYDEAGDSDEQP 455

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 456 IIITPCMRDL 465


>gi|148693197|gb|EDL25144.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_f [Mus musculus]
          Length = 1638

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 748  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 807

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 808  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 867

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 868  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 916

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 917  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 976

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 977  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1034

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1035 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1094

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1095 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1150

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1151 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1201

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1202 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1243

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1244 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1303

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1304 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1363

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1364 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1422

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1423 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1482

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1483 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1542

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1543 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1602

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1603 PLAKAIGLEIK 1613



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 425 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 483

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 484 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 539

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 540 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 598

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 599 IFLSPCMRAL 608


>gi|148693193|gb|EDL25140.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_b [Mus musculus]
          Length = 1645

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 755  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 814

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 815  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 874

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 875  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 923

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 924  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 983

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 984  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1041

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1042 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1101

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1102 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1157

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1158 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1208

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1209 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1250

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1251 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1310

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1311 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1370

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1371 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1429

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1430 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1489

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1490 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1549

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1550 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1609

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1610 PLAKAIGLEIK 1620



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 432 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 490

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 491 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 546

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 547 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 605

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 606 IFLSPCMRAL 615


>gi|327180734|ref|NP_034196.5| DNA (cytosine-5)-methyltransferase 1 isoform 2 [Mus musculus]
          Length = 1619

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 729  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 788

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 789  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 848

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 849  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 897

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 898  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 957

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 958  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1015

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1016 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1075

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1076 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1131

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1132 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1182

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1183 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1224

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1225 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1284

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1285 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1344

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1345 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1403

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1404 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1463

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1464 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1523

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1524 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1583

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1584 PLAKAIGLEIK 1594



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 406 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 464

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 465 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 520

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 521 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 579

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 580 IFLSPCMRAL 589


>gi|313661499|ref|NP_001186362.1| DNA (cytosine-5)-methyltransferase 1 isoform 4 [Mus musculus]
 gi|7339827|gb|AAF60965.1| DNA methyltransferase [Mus musculus]
 gi|9719249|gb|AAF97695.1| DNA (cytosine-5)-methyltransferase [Mus musculus]
 gi|148693192|gb|EDL25139.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_a [Mus musculus]
 gi|148693198|gb|EDL25145.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_a [Mus musculus]
          Length = 1502

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 612  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 671

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 672  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 731

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 732  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 780

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 781  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 840

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 841  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 898

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 899  IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 958

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 959  DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1014

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1015 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1065

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1066 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1107

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1108 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1167

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1168 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1227

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1228 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1286

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1287 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1346

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1347 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1406

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1407 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1466

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1467 PLAKAIGLEIK 1477



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 289 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 347

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 348 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 403

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 404 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 462

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 463 IFLSPCMRAL 472


>gi|148693195|gb|EDL25142.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_d [Mus musculus]
          Length = 1619

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 729  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 788

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 789  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 848

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 849  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 897

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 898  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 957

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 958  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1015

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1016 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1075

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1076 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1131

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1132 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1182

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1183 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1224

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1225 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1284

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1285 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1344

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1345 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1403

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1404 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1463

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1464 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1523

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1524 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1583

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1584 PLAKAIGLEIK 1594



 Score = 48.1 bits (113), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 406 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 464

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 465 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 520

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 521 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 579

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 580 IFLSPCMRAL 589


>gi|327180732|ref|NP_001186360.2| DNA (cytosine-5)-methyltransferase 1 isoform 1 [Mus musculus]
 gi|20141336|sp|P13864.5|DNMT1_MOUSE RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            Short=Met-1; AltName: Full=DNA methyltransferase MmuI;
            Short=DNA MTase MmuI; Short=M.MmuI; AltName: Full=MCMT
 gi|6625687|gb|AAF19352.1| DNA methyltransferase [Mus musculus]
 gi|37574019|gb|AAH48148.2| DNA methyltransferase (cytosine-5) 1 [Mus musculus]
          Length = 1620

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 730  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 789

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 790  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 849

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 850  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 898

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 899  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 958

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 959  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1016

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1017 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1076

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1077 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1132

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1133 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1183

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1184 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1225

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1226 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1285

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1286 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1345

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1346 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1404

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1405 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1464

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1465 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1524

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1525 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1584

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1585 PLAKAIGLEIK 1595



 Score = 48.1 bits (113), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 407 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 465

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 466 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 521

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 522 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 580

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 581 IFLSPCMRAL 590


>gi|182765469|ref|NP_001116832.1| uncharacterized protein LOC100036795 [Xenopus laevis]
 gi|171846414|gb|AAI61682.1| LOC100036795 protein [Xenopus laevis]
          Length = 1492

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 312/905 (34%), Positives = 470/905 (51%), Gaps = 129/905 (14%)

Query: 739  ITWEGECVRKSG-LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G    Y K  +  EV+ +G  V V  D   +   +  +  M+E   G  
Sbjct: 606  ISWVGDPVKTEGKREFYLKVSIDAEVLEVGDCVSVSPDNPTEPLYLARITSMWEDACG-P 664

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K TV+    S  W  +   D
Sbjct: 665  MFHAHWFCLGTDTVLGATSDPLELFLVDECEDMQLSYIHGKVTVIYKAPSDNWFMEGGAD 724

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP--VDSMGLGVGSCHACGTK 913
                   D    E+       + Y+ +  Y PE   F   P    +       C +C   
Sbjct: 725  ------TDIKVVEDDG-----STYFYQLWYDPEYSRFETPPNPQPTEDNKYKFCTSCSRL 773

Query: 914  ESEKEKETFKVHS-----KTSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFK-- 961
            +  ++KE  +V        +   Y TA      Y V D V + P  F++    G   K  
Sbjct: 774  DEIRQKEMPRVSDPIDDLDSKVCYSTATKNDVHYKVGDGVLLLPDAFSFSVKVGSPMKRP 833

Query: 962  ----------------------AGRNV-GLKPYVVCQLLEIIVPK----EPKRAEVKSTQ 994
                                   G N+   +PY + ++ EI   K    +P  A++K   
Sbjct: 834  HKKDDVDEDLYPEYYRKSSDYIKGSNLDAPEPYRLGRIKEIFCNKRSNGKPNEADIK--- 890

Query: 995  VKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NA 1050
            +++ +F+RP++     + +Y SD+  VY+S+E  ++  + + G C V    D+     + 
Sbjct: 891  LRIYKFYRPENTHKGMKASYHSDVNMVYWSDEEAVVEFKVVQGHCTVEYGEDLTESIQDY 950

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A   + F+    ++    S +  P H +      ++       + KGK      + E E
Sbjct: 951  SAGGSNRFYFLEAYNAKTKSFEDPPNHAR-----SAVIKGKGKGKGKGKGKTLSSKSENE 1005

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
            +     +   L TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+LN+P + +  
Sbjct: 1006 QINSGDKLPKLRTLDVFSGCGGLSEGFHQAGISETNWAIEMWEPAAQAFRLNNPGTTVFT 1065

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
             +CNV+L+ VM              + E   SL +     LP  G V+ + GGPPCQGFS
Sbjct: 1066 EDCNVLLKLVM--------------SGEKTNSLGQR----LPQKGDVEMLCGGPPCQGFS 1107

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM 1290
            GMNRFN  T+SK +  +++++LS+ DY++P++FLLENVRNFVSF      +LTL  L+ M
Sbjct: 1108 GMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKSSMVLKLTLRCLVRM 1167

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQY 1349
            GYQ  FG+L+AG +GV+Q+R+RA + AA+P + LP +PEP+HVFA     + ++ D  +Y
Sbjct: 1168 GYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLHVFAPRACSLGVVVDEKKY 1227

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLT 1407
             +  +  + + FR +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IRG+    +L 
Sbjct: 1228 VSNITRTSSSLFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIRGSQYQPILR 1287

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------------- 1446
            DHI K+++ L   R + IP  PG+DW DLP+ +V+LS G                     
Sbjct: 1288 DHICKDLSALVAARMRHIPLAPGSDWRDLPNMEVRLSDGTTSRKLRYSHHDKKNGRSSNG 1347

Query: 1447 -------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ 1487
                               Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+
Sbjct: 1348 ALRGVCSCAEGKPCDPADRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPE 1407

Query: 1488 PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP L+ A+G +
Sbjct: 1408 PMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLSKAIGLE 1467

Query: 1548 LKEAV 1552
            +K  V
Sbjct: 1468 IKACV 1472



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 104 ARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREK 155
           A +DG     D P  ++  F ++D+ G   P +   I+   +L+ SG++ P+ +  +   
Sbjct: 267 ANEDGFESYDDLPQHKVTCFSIYDKRGHLCPFDSGLIEKNVELYFSGVVKPIYDD-NPSL 325

Query: 156 EKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
           + GVR +  G I SW I+G++ G   +I  +T  ADY  +  +  Y   + L  EK    
Sbjct: 326 DGGVRAKKLGPINSWWITGFDGGEKALIGFTTAFADYILMDSSEEYSSIFALMQEK---- 381

Query: 215 IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
           I + K + +    N D S ++LL  +  ++  S         +D ++   +F+  Q+   
Sbjct: 382 IYMSKIVVEFLQNNPDVSYEDLLNKIETAVPPSG-LNFNRFTEDSLLRHAQFVVEQVESY 440

Query: 275 DETSKKNDQKFAELPVLVA 293
           DE   +++Q     PVLV 
Sbjct: 441 DEAGDRDEQ-----PVLVT 454


>gi|31419356|gb|AAH53047.1| Dnmt1 protein [Mus musculus]
          Length = 1627

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 737  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 796

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 797  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 856

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 857  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 905

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 906  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 965

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 966  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1023

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1024 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1083

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1084 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1139

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1140 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1190

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1191 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1232

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1233 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1292

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1293 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1352

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1353 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1411

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1412 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1471

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1472 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1531

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1532 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1591

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1592 PLAKAIGLEIK 1602



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 414 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 472

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 473 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 528

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 529 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 587

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 588 IFLSPCMRAL 597


>gi|313661497|ref|NP_001186361.1| DNA (cytosine-5)-methyltransferase 1 isoform 3 [Mus musculus]
          Length = 1501

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 611  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 670

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 671  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 730

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 731  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 779

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 780  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 839

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 840  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 897

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 898  IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 957

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 958  DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1013

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1014 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1064

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1065 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1106

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1107 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1166

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1167 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1226

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1227 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1285

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1286 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1345

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1346 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1405

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1406 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1465

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1466 PLAKAIGLEIK 1476



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 288 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 346

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 347 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 402

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 403 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 461

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 462 IFLSPCMRAL 471


>gi|390363610|ref|XP_003730410.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like
            [Strongylocentrotus purpuratus]
          Length = 1618

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 326/965 (33%), Positives = 495/965 (51%), Gaps = 130/965 (13%)

Query: 685  GKEETACEANE--DEEVEEQGENEEDDTEEE----KLISEERQISCSVAVQIKSRSTKKE 738
            GK + AC+     +  V+E  EN+ D+ ++     K+  ++ +    +   +K +   K 
Sbjct: 668  GKAKQACKERRCPNMAVQEADENDFDEMDDSNKNGKMDDKKAKRGRKLGSPLKKKKRAK- 726

Query: 739  ITWEGECVRKS-GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            +TW GE    +   A YK A++  + +  G  V +  D+  +   I  V YM++ + G  
Sbjct: 727  VTWIGEPEEVTKDRAFYKAAMIDDQKIENGDCVQIHPDDPTKPLFIARVIYMWQDSDGEM 786

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQ--TVVVDIRSVPWGHQHRKD 855
            +FH      GS TVLG  ++  E+F  ++C+D  L  +    +V+    S  W      D
Sbjct: 787  MFHAQWFVYGSETVLGEASDPLELFPIDECQDTYLASVNDNCSVIYKAPSPDWSMLGGID 846

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKES 915
                D V +   E+  K     ++Y   L   E       P D       SC  C   E 
Sbjct: 847  DPETDHVIK---EDDGKTFFYQKWYDPDLARFEDYELLSRPDDVPAHRFCSC--CLKMER 901

Query: 916  EKEKETFKVHSK------------TSFVYGTAEYFVHDYVYISPHHFTWD---------- 953
             +EKE+ +  +K            +S  +   E+ + D VY+ P  F+++          
Sbjct: 902  IQEKESPRPGAKLEDQEDSSRITYSSCHFKGNEFQIGDGVYLLPEAFSFNIKQKVVTKKP 961

Query: 954  ---------------KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
                           +   E  K       +P+ + +++ I   K   +      +++V 
Sbjct: 962  ISKKDVDEDLYPENYRKHSEYVKGSNLECPEPFRIGKIVAIYTTKSNSKV-----KLQVN 1016

Query: 999  RFFRPDDISAEK--AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAIF 1054
            + +RP++    +  AY +D+  +Y+SEE  ++ +  + G+C V    D+        A  
Sbjct: 1017 KLYRPENTHKGRTAAYQADLNVLYWSEEEAIVELSDVQGQCSVVCAEDLNVSVDEYSAGG 1076

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
             H F+    +D  +   +  P+       S S   +   + K     +G+ E + EK+  
Sbjct: 1077 PHKFYFREAYDSKRKCFEDPPS------KSRSNRMKGKGKGKGKGKAKGKTEKQEEKEST 1130

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
             +  + L  LD+FAGCGGLSEG  Q+GI  + WAIE EEPA +AF+LN+P S +  ++CN
Sbjct: 1131 DNPFHKLKCLDVFAGCGGLSEGFHQAGICESSWAIEKEEPAAQAFRLNNPGSTVFSDDCN 1190

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
             +LR VM+  GD      TS   +            LP  G V+ + GGPPCQGFSGMNR
Sbjct: 1191 ELLRLVMQ--GD-----KTSRTGQ-----------KLPQKGDVELLCGGPPCQGFSGMNR 1232

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
            FN   +SK +  +I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGYQ 
Sbjct: 1233 FNSREYSKFKNSLISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQC 1292

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAV 1352
             FGIL+AG +GV Q+R+RA I AA+P + LP +PEP+HVF+  A  L +M+ D  +  + 
Sbjct: 1293 TFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLHVFSPRACSLSVMIGDK-KIQSN 1351

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHI 1410
                  AP+R ++VRD++ DLP + NGA K  + Y  +P S FQK+IRGN    +L DH+
Sbjct: 1352 NQWCLSAPYRTISVRDSMSDLPTISNGAQKLEISYDGEPQSDFQKKIRGNQYQPILRDHM 1411

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKV---------------------KLSTG--- 1446
             K+M+ L   R + IP  PG+DW DLP+  V                     KLSTG   
Sbjct: 1412 CKDMSALVAARMKHIPLAPGSDWRDLPNIPVPLKDGTTCRKLRYTHRDTKSGKLSTGALK 1471

Query: 1447 ----------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
                            Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMG
Sbjct: 1472 GVCSCAEGEACDPSDRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 1531

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            K G   HP+Q R+++VRECARSQGFPD+Y+F GSI  KHRQIGNAVPP +A A+G ++K+
Sbjct: 1532 KQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQIGNAVPPPMAAAIGMEIKQ 1591

Query: 1551 AVESK 1555
             +++K
Sbjct: 1592 CLQAK 1596



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG + P+ +  +   E G+  +  G I  W  +G++ G   +I  ST  A+Y  + 
Sbjct: 427 ELYFSGYVKPIYDE-NSSIEGGIPTKRMGPINEWFTTGFDGGEKALIGFSTAFAEYIVMS 485

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  YK ++    EK    I + K L +      D   ++LL+ +  ++    C R    
Sbjct: 486 PSEEYKPFWTAVQEK----IYMSKILIEFLQSTQDAVYEDLLSQIQTTVPPEGCNR---F 538

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+  Q+   DE +  ++     +P +  L
Sbjct: 539 TEDTLLRHAQFVVEQVESYDEAADLDEVLLITMPCMRDL 577


>gi|148693196|gb|EDL25143.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_e [Mus musculus]
          Length = 1604

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 478/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 714  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 773

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 774  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 833

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 834  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 882

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 883  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 942

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 943  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1000

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1001 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1060

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1061 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1116

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1117 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1167

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1168 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1209

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1210 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1269

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1270 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1329

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1330 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1388

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1389 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1448

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1449 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1508

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1509 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1568

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1569 PLAKAIGLEIK 1579



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 391 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 449

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 450 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 505

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 506 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 564

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 565 IFLSPCMRAL 574


>gi|148693194|gb|EDL25141.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_c [Mus musculus]
          Length = 1683

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 386/1289 (29%), Positives = 604/1289 (46%), Gaps = 224/1289 (17%)

Query: 402  DELLAYDSDYDSCDI-DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKM 460
            ++L  YDS     D  +  P      +S+Y S   L  ++   ++  +++++   G  K 
Sbjct: 453  EKLSIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCPVDTGLIE--KNVELYFSGCAKA 510

Query: 461  ISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLA 518
            I DE               G++G          L  I +W +    G   + I   T  A
Sbjct: 511  IHDENPSM---------EGGINGKN--------LGPINQWWLSGFDGGEKVLIGFSTAFA 553

Query: 519  WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSY 578
             Y L +PSK+Y P +   L   ++ IS I +   Q     + + D+I ++        + 
Sbjct: 554  EYILMEPSKEYEPIFG--LMQEKIYISKIVVEFLQNNPDAV-YEDLINKI-------ETT 603

Query: 579  ISSDPAAVERY----VVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
            +      V R+    ++ H Q V+     Y DE        I L   M    H   +   
Sbjct: 604  VPPSTINVNRFTEDSLLRHAQFVVSQVESY-DEAKDDDETPIFLSPCMRALIHLAGVSLG 662

Query: 635  KKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWG-------EYYSNYSPEDGKE 687
            ++          R  MG      +   +ATTT+L+ +I+        E Y     E+  +
Sbjct: 663  QRRAT-------RRVMGATKEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAMK 715

Query: 688  ETACEANEDEEVEEQGENEE-------DDTEEEKLISEERQISCSVAVQIKSR------- 733
               C   E  +  E G+ +          T   K    +R+   ++AV+           
Sbjct: 716  RRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCP-NLAVKEADDDEEADDD 774

Query: 734  -----------------STKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVD 775
                               K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D
Sbjct: 775  VSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPD 834

Query: 776  ELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI 835
            +  +   +  V  ++E   G  +FH      G+ TVLG T++  E+FL  +C +++L  I
Sbjct: 835  DSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYI 894

Query: 836  --KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF 893
              K  V+    S  W  +   D     +     AE+ K        Y   L++ +  A F
Sbjct: 895  HSKVKVIYKAPSENWAMEGGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARF 943

Query: 894  ILPVDSMGLGVGS---CHACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVH 940
              P  +          C +C      ++KE  KV  +          +S       Y + 
Sbjct: 944  ESPPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLG 1003

Query: 941  DYVYISPHHFTWDKAEGETFK-----------------------AGRNV-GLKPYVVCQL 976
            D VY+ P  FT++       K                        G N+   +PY + ++
Sbjct: 1004 DSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRI 1063

Query: 977  LEIIVPKEPKRAEVKSTQVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEA 1032
             EI   K  K+ +V    +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    
Sbjct: 1064 KEIHCGK--KKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSD 1121

Query: 1033 IAGKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSS 1084
            + G+C V    D+       +   P  F   +F E  +  +K + +  P H +       
Sbjct: 1122 VQGRCTVEYGEDLLESIQDYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGK 1177

Query: 1085 GSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS 1144
            G    +   + +  +  E E  +++ K         L TLD+F+GCGGLSEG  Q+GIS 
Sbjct: 1178 GKGKGKGKGKHQVSEPKEPEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISE 1228

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
            T WAIE  +PA +AF+LN+P + +   +CNV+L+ VM              A E+  SL 
Sbjct: 1229 TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------AGEVTNSLG 1274

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
            +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FL
Sbjct: 1275 QR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFL 1330

Query: 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL 1324
            LENVRNFVS+ +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + L
Sbjct: 1331 LENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKL 1390

Query: 1325 PEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASK 1382
            P +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS 
Sbjct: 1391 PLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASN 1449

Query: 1383 TIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440
            + + Y  +P+SWFQ+++RG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +
Sbjct: 1450 SEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 1509

Query: 1441 VKLSTG----------------------------------------QVVDLIPWCLPNTA 1460
            V+L  G                                        Q   LIPWCLP+T 
Sbjct: 1510 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1569

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
             RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+
Sbjct: 1570 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 1629

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            F G+I  +HRQ+GNAVPP LA A+G ++K
Sbjct: 1630 FFGNILDRHRQVGNAVPPPLAKAIGLEIK 1658



 Score = 48.1 bits (113), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 470 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 528

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 529 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 584

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 585 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 643

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 644 IFLSPCMRAL 653


>gi|72091983|ref|XP_780273.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like isoform 1
            [Strongylocentrotus purpuratus]
          Length = 1618

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 325/965 (33%), Positives = 495/965 (51%), Gaps = 130/965 (13%)

Query: 685  GKEETACEANE--DEEVEEQGENEEDDTEEE----KLISEERQISCSVAVQIKSRSTKKE 738
            GK + AC+     +  V+E  EN+ D+ ++     K+  ++ +    +   +K +   K 
Sbjct: 668  GKAKQACKERRCPNMAVQEADENDFDEMDDSNKNGKMDDKKAKRGRKLGSPLKKKKRAK- 726

Query: 739  ITWEGECVRKS-GLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            +TW GE    +   A YK A++  + +  G  V +  D+  +   I  V YM++ + G  
Sbjct: 727  VTWIGEPEEVTKDRAFYKAAMIDDQKIENGDCVQIHPDDPTKPLFIARVIYMWQDSDGEM 786

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQ--TVVVDIRSVPWGHQHRKD 855
            +FH      GS TVLG  ++  E+F  ++C+D  L  +    +V+    S  W      D
Sbjct: 787  MFHAQWFVYGSETVLGEASDPLELFPIDECQDTYLASVNDNCSVIYKAPSPDWSMLGGID 846

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKES 915
                D V +   E+  K     ++Y   L   E       P D       SC  C   E 
Sbjct: 847  DPETDHVIK---EDDGKTFFYQKWYDPDLARFEDYELLSRPDDVPAHRFCSC--CLKMER 901

Query: 916  EKEKETFKVHSK------------TSFVYGTAEYFVHDYVYISPHHFTWD---------- 953
             +EKE+ +  +K            +S  +   E+ + D VY+ P  F+++          
Sbjct: 902  IQEKESPRPGAKLEDQEDSSRITYSSCHFKGNEFQIGDGVYLLPEAFSFNIKQKVVTKKP 961

Query: 954  ---------------KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
                           +   E  K       +P+ + +++ I   K   +      +++V 
Sbjct: 962  ISKKDVDEDLYPENYRKHSEYVKGSNLECPEPFRIGKIVAIYTTKSNSKV-----KLQVN 1016

Query: 999  RFFRPDDISAEK--AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAIF 1054
            + +RP++    +  AY +D+  +Y+SEE  ++ +  + G+C V    D+        A  
Sbjct: 1017 KLYRPENTHKGRTAAYQADLNVLYWSEEEAIVELSDVQGQCSVVCAEDLNVSVDEYSAGG 1076

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
             H F+    +D  +   +  P+       S S   +   + K     +G+ E + EK+  
Sbjct: 1077 PHKFYFREAYDSKRKCFEDPPS------KSRSNRMKGKGKGKGKGKAKGKTEKQEEKEST 1130

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
             +  + L  LD+FAGCGGLSEG  Q+GI  + WAIE EEPA +AF+LN+P S +  ++CN
Sbjct: 1131 DNPFHKLKCLDVFAGCGGLSEGFHQAGICESSWAIEKEEPAAQAFRLNNPGSTVFSDDCN 1190

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
             +LR VM+  GD      TS   +            LP  G V+ + GGPPCQGFSGMNR
Sbjct: 1191 ELLRLVMQ--GD-----KTSRTGQ-----------KLPQKGDVELLCGGPPCQGFSGMNR 1232

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
            FN   +SK +  +I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGYQ 
Sbjct: 1233 FNSREYSKFKNSLISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQC 1292

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAV 1352
             FGIL+AG +GV Q+R+RA I AA+P + LP +PEP+HVF+  A  L +M+ D  +  + 
Sbjct: 1293 TFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLHVFSPRACSLSVMIGDK-KIQSN 1351

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHI 1410
                  AP+R ++VRD++ DLP + NGA K  + Y  +P S FQK+IRGN    +L DH+
Sbjct: 1352 NQWCLSAPYRTISVRDSMSDLPTISNGAQKLEISYDGEPQSDFQKKIRGNQYQPILRDHM 1411

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKV---------------------KLSTG--- 1446
             K+M+ L   R + IP  PG+DW DLP+  V                     KLSTG   
Sbjct: 1412 CKDMSALVAARMKHIPLAPGSDWRDLPNIPVPLKDGTTCRKLRYTHRDTKSGKLSTGALK 1471

Query: 1447 ----------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
                            Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMG
Sbjct: 1472 GVCSCAEGEACDPSDRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMG 1531

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            K G   HP+Q R+++VRECARSQGFPD+Y+F GSI  KHRQ+GNAVPP +A A+G ++K+
Sbjct: 1532 KQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQVGNAVPPPMAAAIGMEIKQ 1591

Query: 1551 AVESK 1555
             +++K
Sbjct: 1592 CLQAK 1596



 Score = 47.4 bits (111), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG + P+ +  +   E G+  +  G I  W  +G++ G   +I  ST  A+Y  + 
Sbjct: 427 ELYFSGYVKPIYDE-NSSIEGGIPTKRMGPINEWFTTGFDGGEKALIGFSTAFAEYIVMS 485

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  YK ++    EK    I + K L +      D   ++LL+ +  ++    C R    
Sbjct: 486 PSEEYKPFWTAVQEK----IYMSKILIEFLQSTQDAVYEDLLSQIQTTVPPEGCNR---F 538

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+  Q+   DE +  ++     +P +  L
Sbjct: 539 TEDTLLRHAQFVVEQVESYDEAADLDEVLLITMPCMRDL 577


>gi|190338613|gb|AAI63894.1| Dnmt1 protein [Danio rerio]
          Length = 1500

 Score =  508 bits (1308), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 315/914 (34%), Positives = 472/914 (51%), Gaps = 139/914 (15%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE ++  G    Y K  V  EV+ +G  V V  D  D    +Y          G K
Sbjct: 611  ISWVGEPLKTEGKKEYYMKVRVENEVLEVGDCVSVSPD--DPSHPLYLARITALWDDGEK 668

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH     RG+ TVLG +++  E+FL ++C D++L  I  K  V     S  W  +   D
Sbjct: 669  MFHAHWFCRGTDTVLGESSDPLELFLVDECEDMQLSFIHGKVNVFYKAPSENWYMEGGMD 728

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP---VDSMGLGVGSCHACGT 912
                        E+ K      E +   L++    A F  P     S       C +C T
Sbjct: 729  ------------EDIKVIDDDGESFFYQLHYEGECARFETPPKVTPSEDCKYKFCASC-T 775

Query: 913  KESEKEKETF--------KVHSKTSFVYGTA-----EYFVHDYVYISPHHFTW------- 952
            +  E+E E+            S +   YG       +Y V D VY+ P  F +       
Sbjct: 776  RNEEREAESVPHAYEPLEDEESDSKVFYGLVNYKGEQYKVGDSVYLPPEAFNFVVKAASP 835

Query: 953  -------DKAEGETFK----------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
                   D  + + +            G N+   +P+ + ++ EI   K     +  +T+
Sbjct: 836  VKRSHRKDDVDEDLYPEYYRKSSDYIKGSNLDAPQPFRIGRIKEIFCNKR-SNGKPDTTE 894

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++     + AY SDI ++Y+S+E   + +  +  +C V    D+     
Sbjct: 895  IKLRLYKFYRPENTHKGPKGAYHSDINQLYWSDEEATVSMTEVLTRCRVEYAEDLVESVQ 954

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
              +   P  F   +F E  +  +K S +  P H +   + G    +   + K     +  
Sbjct: 955  DYSNKGPDRF---YFLEAYNAKTK-SFEDPPNHARSAVNKGKGKGKGKGKGKGKAAPQEP 1010

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             + E ++         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P
Sbjct: 1011 QDQEAQEPAVPK----LRTLDVFSGCGGLSEGFHQAGISETHWAIEMWDPAAQAFRLNNP 1066

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +   +CNV+L+ VM              + E   SL +     LP  G V+ + GGP
Sbjct: 1067 GTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLCGGP 1108

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  +++++LS+ DY++P++FLLENVRNFVSF +    +LTL
Sbjct: 1109 PCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKRSMVLKLTL 1168

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA     + ++
Sbjct: 1169 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPRYPEPLHVFAPRACSLSVA 1228

Query: 1345 -DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN- 1402
             D  +Y +  +  NG  +R +TVRDT+ DLP + NGA+   + Y  +P SWFQ++IRG+ 
Sbjct: 1229 VDEKKYVSNVTRGNGGIYRTITVRDTMSDLPEIRNGAAALEISYNGEPQSWFQRQIRGSQ 1288

Query: 1403 -MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------- 1446
               +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G               
Sbjct: 1289 YQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLRDGTTTKKLRYTHSDKKN 1348

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1349 GRSGTGALRGVCSCSEGKQCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1408

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G++  KHRQ+GNAVPP L+
Sbjct: 1409 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNVLDKHRQVGNAVPPPLS 1468

Query: 1542 FALGRKLKEAVESK 1555
             A+G ++K+ V  K
Sbjct: 1469 KAIGLEVKKCVLEK 1482



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++ +F ++D+ G   P +   I+   +L+ S  + P+ + +    + GV  +  G
Sbjct: 282 DLPQHKITNFSVYDKRGHLCPFDSGLIEKNVELYFSCAVKPIYDDNPC-MDGGVPAKKLG 340

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  + P+  Y   + L  EK      V + L K 
Sbjct: 341 PINAWWITGFDGGEKALIGFTTAFADYILMDPSEEYSAIFALMQEKIYMSKIVVEFLQK- 399

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++LL  +  ++  +         +D ++   +F+  Q+   DE    ++Q 
Sbjct: 400 ---NQDATYEDLLNKIETTVPPAG-LNFNRFTEDTLLRHAQFVVEQVESYDEAGDSDEQP 455

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 456 IIITPCMRDL 465


>gi|332138119|pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
 gi|332138120|pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
            Adohcy
 gi|332138121|pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
            Adomet
          Length = 1330

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 385/1289 (29%), Positives = 604/1289 (46%), Gaps = 224/1289 (17%)

Query: 402  DELLAYDSDYDSCDI-DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKM 460
            ++L  YDS     D  +  P      +S+Y S   L  ++   ++  +++++   G  K 
Sbjct: 100  EKLSIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCPVDTGLIE--KNVELYFSGCAKA 157

Query: 461  ISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLA 518
            I DE               G++G          L  I +W +    G   + I   T  A
Sbjct: 158  IHDENPSM---------EGGINGKN--------LGPINQWWLSGFDGGEKVLIGFSTAFA 200

Query: 519  WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSY 578
             Y L +PSK+Y P +   L   ++ IS I +   Q     + + D+I ++        + 
Sbjct: 201  EYILMEPSKEYEPIFG--LMQEKIYISKIVVEFLQNNPDAV-YEDLINKI-------ETT 250

Query: 579  ISSDPAAVERY----VVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
            +      V R+    ++ H Q V+     Y DE        I L   M    H   +   
Sbjct: 251  VPPSTINVNRFTEDSLLRHAQFVVSQVESY-DEAKDDDETPIFLSPCMRALIHLAGVSLG 309

Query: 635  KKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEY-------YSNYSPEDGKE 687
            ++          R  MG      +   +ATTT+L+ +I+  +       Y     E+  +
Sbjct: 310  QRRAT-------RRVMGATKEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAMK 362

Query: 688  ETACEANEDEEVEEQGENEE-------DDTEEEKLISEERQISCSVAVQIKSR------- 733
               C   E  +  E G+ +          T   K    +R+   ++AV+           
Sbjct: 363  RRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCP-NLAVKEADDDEEADDD 421

Query: 734  -----------------STKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVD 775
                               K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D
Sbjct: 422  VSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPD 481

Query: 776  ELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI 835
            +  +   +  V  ++E   G  +FH      G+ TVLG T++  E+FL  +C +++L  I
Sbjct: 482  DSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYI 541

Query: 836  --KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF 893
              K  V+    S  W  +   D     +     AE+ K        Y   L++ +  A F
Sbjct: 542  HSKVKVIYKAPSENWAMEGGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARF 590

Query: 894  ILPVDSMGLGVGS---CHACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVH 940
              P  +          C +C      ++KE  KV  +          +S       Y + 
Sbjct: 591  ESPPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLG 650

Query: 941  DYVYISPHHFTWDKAEGETFK-----------------------AGRNV-GLKPYVVCQL 976
            D VY+ P  FT++       K                        G N+   +PY + ++
Sbjct: 651  DSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRI 710

Query: 977  LEIIVPKEPKRAEVKSTQVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEA 1032
             EI   K  K+ +V    +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    
Sbjct: 711  KEIHCGK--KKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSD 768

Query: 1033 IAGKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSS 1084
            + G+C V    D+       +   P  F   +F E  +  +K + +  P H +       
Sbjct: 769  VQGRCTVEYGEDLLESIQDYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGK 824

Query: 1085 GSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS 1144
            G    +   + +  +  E E  +++ K         L TLD+F+GCGGLSEG  Q+GIS 
Sbjct: 825  GKGKGKGKGKHQVSEPKEPEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISE 875

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
            T WAIE  +PA +AF+LN+P + +   +CNV+L+ VM              A E+  SL 
Sbjct: 876  TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------AGEVTNSLG 921

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
            +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FL
Sbjct: 922  QR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFL 977

Query: 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL 1324
            LENVRNFVS+ +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + L
Sbjct: 978  LENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKL 1037

Query: 1325 PEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASK 1382
            P +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS 
Sbjct: 1038 PLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASN 1096

Query: 1383 TIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440
            + + Y  +P+SWFQ+++RG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +
Sbjct: 1097 SEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 1156

Query: 1441 VKLSTG----------------------------------------QVVDLIPWCLPNTA 1460
            V+L  G                                        Q   LIPWCLP+T 
Sbjct: 1157 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1216

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
             RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+
Sbjct: 1217 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 1276

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            F G+I  +HRQ+GNAVPP LA A+G ++K
Sbjct: 1277 FFGNILDRHRQVGNAVPPPLAKAIGLEIK 1305



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 117 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 175

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 176 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 231

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 232 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 290

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 291 IFLSPCMRAL 300


>gi|2689716|gb|AAC40061.1| DNA (cytosine-5)-methyltransferase [Mus musculus]
          Length = 1502

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 386/1290 (29%), Positives = 607/1290 (47%), Gaps = 225/1290 (17%)

Query: 402  DELLAYDSDYDSCDI-DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKM 460
            ++L  YDS     D  +  P      +S+Y S   L  ++   ++  +++++   G  K 
Sbjct: 271  EKLSIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCPVDTGLIE--KNVELYFSGCAKA 328

Query: 461  ISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLA 518
            I DE               G++G          L  I +W +    G   + I   T  A
Sbjct: 329  IHDENPSM---------EGGINGKN--------LGPINQWWLSGFDGGEKVLIGFSTAFA 371

Query: 519  WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSY 578
             Y L +PSK+Y P +   L   ++ IS I +   Q     + + D+I ++        + 
Sbjct: 372  EYILMEPSKEYEPIFG--LMQEKIYISKIVVEFLQNNPDAV-YEDLINKI-------ETT 421

Query: 579  ISSDPAAVERY----VVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
            +      V R+    ++ H Q V+     Y DE        I L   M    H   +   
Sbjct: 422  VPPSTINVNRFTEDSLLRHAQFVVSQVESY-DEAKDDDETPIFLSPCMRALIHLAGVSLG 480

Query: 635  KKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWG-------EYYSNYSPEDGKE 687
            ++          R  MG      +   +ATTT+L+ +I+        E Y     E+  +
Sbjct: 481  QRRAT-------RRVMGATKEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAMK 533

Query: 688  ETACEANEDEEVEEQGENEE-------DDTEEEKLISEERQISCSVAVQIKSR------- 733
               C   E  +  E G+ +          T   K    +R+   ++AV+           
Sbjct: 534  RRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCP-NLAVKEADDDEEADDD 592

Query: 734  -----------------STKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVD 775
                               K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D
Sbjct: 593  VSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPD 652

Query: 776  ELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI 835
            +  +   +  V  ++E   G  +FH      G+ TVLG T++  E+FL  +C +++L  I
Sbjct: 653  DSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYI 712

Query: 836  --KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF 893
              K  V+    S  W  +   D     +     AE+ K        Y   L++ +  A F
Sbjct: 713  HSKVKVIYKAPSENWAMEGGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARF 761

Query: 894  ILPVDSMGLGVGS---CHACGTKESEKEKETFKVHSKTSFVYGTAE----------YFVH 940
              P  +          C +C      ++KE  KV  +   V G             Y + 
Sbjct: 762  ESPPKTQPTEDNKHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVCYRLG 821

Query: 941  DYVYISPHHFTWD------------------KAEGETFKA------GRNV-GLKPYVVCQ 975
            D VY+    FT++                      +T++       GRN+   +PY + +
Sbjct: 822  DSVYLPREAFTFNIKVASPVKRPKKDPVKENPVPRDTYRKYSDYIKGRNLDAPEPYRIGR 881

Query: 976  LLEIIVPKEPKRAEVKSTQVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVE 1031
            + EI   K  K+ +V    +K+R  +F+RP++   S   +Y +DI  + +S+E  ++   
Sbjct: 882  IKEIHCGK--KKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLCWSDEEAVVNFS 939

Query: 1032 AIAGKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYS 1083
             + G+C V  + D+       +   P  F   +F E  +  +K + +  P H +      
Sbjct: 940  DVQGRCTVEYREDLLESIQDYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKG 995

Query: 1084 SGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGIS 1143
             G    +   + +  +  E E  +++ K         L TLD+F+GCGGLSEG  Q+GIS
Sbjct: 996  KGKGKGKGKGKHQVSEPKEPEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGIS 1046

Query: 1144 STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASL 1203
             T WAIE  +PA +AF+LN+P + +   +CNV+L+ VM              A E+  SL
Sbjct: 1047 ETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------AGEVTNSL 1092

Query: 1204 DENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYF 1263
             +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+F
Sbjct: 1093 GQR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFF 1148

Query: 1264 LLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT 1323
            LLENVRNFVS+ +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + 
Sbjct: 1149 LLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEK 1208

Query: 1324 LPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
            LP +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS
Sbjct: 1209 LPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGAS 1267

Query: 1382 KTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE 1439
             + + Y  +P+SWFQ+++RG+    +L DHI K+M+ L   R   IP  PG+DW DLP+ 
Sbjct: 1268 NSEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMPHIPLFPGSDWRDLPNI 1327

Query: 1440 KVKLSTGQVVD----------------------------------------LIPWCLPNT 1459
            +V+L  G + D                                        LIPWCLP+T
Sbjct: 1328 QVRLGDGVIADKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHT 1387

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
              RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY
Sbjct: 1388 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSY 1447

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            +F G+I  +HRQ+GNAVPP LA A+G ++K
Sbjct: 1448 RFFGNILDRHRQVGNAVPPPLAKAIGLEIK 1477



 Score = 48.1 bits (113), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 288 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 346

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 347 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 402

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 403 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 461

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 462 IFLSPCMRAL 471


>gi|354475153|ref|XP_003499794.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Cricetulus griseus]
          Length = 1621

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 315/908 (34%), Positives = 475/908 (52%), Gaps = 137/908 (15%)

Query: 736  KKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATG 794
            K  I+W G+ ++ +     Y+K  +  E + +G  V V  D+  +   +  V  ++E   
Sbjct: 733  KDRISWLGQPLKIEEKRTYYQKVCIDEETLEVGDCVSVIPDDSSKPLYLARVTALWEDKN 792

Query: 795  GCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQH 852
            G ++FH      G+ TVLG T++  E+FL  +C D++L  I   V V  R  S  W  + 
Sbjct: 793  G-QMFHAHWFCAGTDTVLGATSDPLELFLVGECEDMQLSYIHSKVKVVYRAPSENWAMEG 851

Query: 853  RKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHA 909
              D+          AE+  K    T +Y   L++ +  A F  P  +          C +
Sbjct: 852  GMDLETV----LPGAEDDGK----TYFY--QLWYNQDYARFESPPKTQPTQDNKHKFCLS 901

Query: 910  CGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGET 959
            C      + KE  KV  +          +S       Y + D VY+ P  FT++      
Sbjct: 902  CIRLGELRHKEMPKVLEQLDEVDGRLYCSSITKNGVVYRIGDSVYLPPEAFTFNLKLASP 961

Query: 960  FK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQV 995
             K                        G N+   +PY + ++  I   K+  +A     ++
Sbjct: 962  LKRTKKEPVDENLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKAIHCGKKNGKANEADIKI 1021

Query: 996  KVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP------A 1047
            ++ +F+RP++   SA   Y +DI  +++S+E  ++    + G+C V  ++D+       +
Sbjct: 1022 RINKFYRPENTHRSASAFYGTDINLLFWSDEEAVVDFSDVQGRCTVEFEDDLLENLQDYS 1081

Query: 1048 CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIEGED 1105
               P  F   +F E  +  SK   +  P H +  L    G    +  ++ +  +  E E 
Sbjct: 1082 KGGPDRF---YFSEAYNAKSK-KFEDPPNHARNPLNKGKGKGKGKGNAKCQVSEPKEPET 1137

Query: 1106 ELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165
             +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P 
Sbjct: 1138 AIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPS 1188

Query: 1166 SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPP 1225
            S +   +CNV+L+ VM              A +L  SL +     LP  G V+ + GGPP
Sbjct: 1189 STVFTEDCNVLLKLVM--------------AGKLTNSLGQR----LPQKGDVEMLCGGPP 1230

Query: 1226 CQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
            CQGFSGMNRFN  T+S  +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL 
Sbjct: 1231 CQGFSGMNRFNSRTYSTFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLR 1290

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIML 1343
             L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++
Sbjct: 1291 CLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVV 1350

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN- 1402
             D    S +    +G P+R +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++R + 
Sbjct: 1351 DDKKFVSNITRLTSG-PYRTITVRDTMSDLPEIQNGASAPEISYSGEPQSWFQRQLRDSA 1409

Query: 1403 -MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------- 1446
               +L DHI K+M+ L   R + IP+ PG+DW DLP+ +V LS G               
Sbjct: 1410 YQPILRDHICKDMSPLVAARMKNIPRSPGSDWRDLPNIEVLLSDGVRTKKLRYNFHDKKN 1469

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   LIPWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 1470 GRSSTGAMRGVCSCYRGTRCSASGXQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFST 1529

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGF D+Y+F GSI  +HRQ+GNAVPP LA
Sbjct: 1530 TVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFRDTYRFFGSILDRHRQVGNAVPPPLA 1589

Query: 1542 FALGRKLK 1549
             A+G ++K
Sbjct: 1590 KAIGLEIK 1597



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  ++  F ++   G   P++   I+   +L+ SG    + + +    E GV  +  G I
Sbjct: 409 PQHKVTCFSVYCNRGHLCPVDTGLIEKNIELYFSGCAKAIYDDNP-SVEGGVNAKNLGPI 467

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+GY+ G   +I  ST  A+Y  ++P+  Y   + L  EK    I + K + +   
Sbjct: 468 NEWWITGYDGGEKALIGFSTPFAEYILMEPSPDYAPIFGLMQEK----IYISKIVVEFLR 523

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N     ++L+  +  ++  S         +D ++   EF+ NQ+   ++    ++    
Sbjct: 524 DNPHAIYEDLINKIQTTVPPS-ALNLNRFTEDSLLRHAEFVVNQVESYNDAKDNDETPIF 582

Query: 287 ELPVLVAL 294
             P + AL
Sbjct: 583 LSPCMRAL 590


>gi|1765919|emb|CAA32910.1| DNA methyltransferase 1 [Mus musculus]
          Length = 1620

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 315/912 (34%), Positives = 481/912 (52%), Gaps = 142/912 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 729  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 788

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 789  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 848

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 849  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 897

Query: 909  ACGTKESEKEKETFKVHSKTSFVYGTAE----------YFVHDYVYISPHHFTWD----- 953
            +C      ++KE  KV  +   V G             Y + D VY+    FT++     
Sbjct: 898  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVCYRLGDSVYLPREAFTFNIKVAS 957

Query: 954  -------------KAEGETFKA------GRNV-GLKPYVVCQLLEIIVPKEPKRAEVKST 993
                             +T++       GRN+   +PY + ++ EI   K  K+ +V   
Sbjct: 958  PVKRPKKDPVKENPVPRDTYRKYSDYIKGRNLDAPEPYRIGRIKEIHCGK--KKGKVNEA 1015

Query: 994  QVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP--- 1046
             +K+R  +F+RP++   S   +Y +DI  + +S+E  ++    + G+C V  + D+    
Sbjct: 1016 DIKLRLYKFYRPENTHRSYNGSYHTDINMLCWSDEEAVVNFSDVQGRCTVEYREDLLESI 1075

Query: 1047 ---ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCI 1101
               +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  
Sbjct: 1076 QDYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPK 1131

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
            E E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+L
Sbjct: 1132 EPEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRL 1182

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN 1221
            N+P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + 
Sbjct: 1183 NNPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLC 1224

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +
Sbjct: 1225 GGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLK 1284

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APEL 1339
            LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L
Sbjct: 1285 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQL 1344

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
             +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++
Sbjct: 1345 SVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQL 1403

Query: 1400 RGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD------- 1450
            RG+    +L DHI K+M+ L   R   IP  PG+DW DLP+ +V+L  G + D       
Sbjct: 1404 RGSHYQPILRDHICKDMSPLVAARMPHIPLFPGSDWRDLPNIQVRLGDGVIADKLQYTFH 1463

Query: 1451 ---------------------------------LIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                                             LIPWCLP+T  RHN W GL+GRL+W+G
Sbjct: 1464 DVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDG 1523

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
             F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVP
Sbjct: 1524 FFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVP 1583

Query: 1538 PTLAFALGRKLK 1549
            P LA A+G ++K
Sbjct: 1584 PPLAKAIGLEIK 1595



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 406 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 464

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 465 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 520

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 521 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 579

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 580 IFLSPCMRAL 589


>gi|74151181|dbj|BAE27713.1| unnamed protein product [Mus musculus]
          Length = 1619

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 314/911 (34%), Positives = 477/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 729  NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 788

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVL  T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 789  NGQMMFHAHWFCAGTDTVLRATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 848

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 849  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 897

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 898  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 957

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 958  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 1015

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1016 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 1075

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 1076 DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 1131

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 1132 PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 1182

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 1183 NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 1224

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 1225 GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 1284

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 1285 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1344

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 1345 VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 1403

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1404 GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 1463

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1464 VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1523

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 1524 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 1583

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 1584 PLAKAIGLEIK 1594



 Score = 48.1 bits (113), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R   F ++   G   P++   I+   +L+ SG    + + +    E G+  +  G
Sbjct: 406 DSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENP-SMEGGINGKNLG 464

Query: 166 RIESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G  V I  ST  A+Y  ++P+  Y+  + L  EK    I + K + + 
Sbjct: 465 PINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEK----IYISKIVVEF 520

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++L+  +  ++  S       + +D ++   +F+ +Q+   DE    ++  
Sbjct: 521 LQNNPDAVYEDLINKIETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETP 579

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 580 IFLSPCMRAL 589


>gi|432869168|ref|XP_004071656.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Oryzias
            latipes]
          Length = 1466

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 383/1300 (29%), Positives = 621/1300 (47%), Gaps = 235/1300 (18%)

Query: 402  DELLA-YDSDYDSCD-IDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGK 459
            DE L+ +DS+ D  +  D LP+  + ++S+Y+    L   +   ++  +++++    + K
Sbjct: 231  DERLSLFDSNEDGFESYDDLPQHRITNFSVYDKRGHLCPFDSGLIE--KNVELYFSCAVK 288

Query: 460  MISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIY-LSSIKEWMIEF--GSSMIFISIRTD 516
             I D+    CLD                GG P   L  I  W I    G     I   T 
Sbjct: 289  PIYDDNP--CLD----------------GGVPAKKLGPINAWWITGFDGGEKALIGFTTA 330

Query: 517  LAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQH 576
             A Y L +PS++YAP +  + +   ++  ++  L++   V+   + D++ ++        
Sbjct: 331  FADYILMQPSEEYAPIFALMQEKIYMSKIVVEFLQKNPDVT---YEDLLNKIE------- 380

Query: 577  SYISSDPAAV------ERYVVVHGQIVLQLFAEY-----PDEQ-------IKKCAFIIGL 618
               +  PA +      E  ++ H Q V++    Y      DEQ       ++    + G+
Sbjct: 381  --TTVPPAGLNFNCFTEDTLLRHAQFVVEQVESYDEAGDSDEQPIIVTPCMRDLIKLAGV 438

Query: 619  MKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
                      + +    K++K         S GP         +ATTT+L+ +I+  ++S
Sbjct: 439  TLGKRRAARRQAIRHPTKIEKD--------SKGPT--------KATTTKLVYQIFDAFFS 482

Query: 679  NYSPEDGKEE---------------------TACE-------ANEDEEVEEQ-------- 702
            +   ++ KE                      TAC+       +   ++  +Q        
Sbjct: 483  DQIEQNDKESALKRQRCGVCEVCQSPDCGKCTACKDMIKFGGSGRSKQACKQRRCPNLAV 542

Query: 703  GENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLA-LYKKAIVHG 761
             E E+D+  EE ++ E+ +     A   K + T+ ++ W GE +   G    YKK  V+ 
Sbjct: 543  KEAEDDEIVEEDVLVEKAK---KDANTKKKKQTQCKLAWIGEPILSEGKKHYYKKVSVND 599

Query: 762  EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREV 821
            EV+ +G  V V  D+      +  +  M+E + G K FH     RG HT LG +++  E+
Sbjct: 600  EVLEVGDCVSVLSDDPSVPLYLARITSMWEGSHG-KTFHAHWFLRGIHTALGESSDPLEL 658

Query: 822  FLANQCRDLELQDIKQTVVVDIR--SVPWGHQHRKDIANADKVDRARAEERKKKGLPTEY 879
             + ++C D+ L  + + V V  +  S  W  +   D      VD    E+  K      +
Sbjct: 659  VVVDECEDMLLSYVHEKVNVMYKAPSNNWFMEGGMD------VDLKVVEDDGKSFFYQFW 712

Query: 880  YCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKV----HSKTSFVYGTA 935
            Y       E       P D      GSC     +  ++  +  +        T  +Y  A
Sbjct: 713  YDTEFARFETPPKTSEPEDCKYRFCGSCARIKERAEQEVPQALEPLENESGDTKVLYALA 772

Query: 936  -----EYFVHDYVYISPHHFTWDKAEGETFK------------------------AGRNV 966
                 ++ + D VY+ P  F+++       K                         G N+
Sbjct: 773  CFKGEQFKIGDGVYLPPDSFSFNMKPASPVKRSHRKEDVDEDLYPEYYRKSSDYIKGSNL 832

Query: 967  -GLKPYVVCQLLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYS 1022
               +P+ V ++ EI   +    +++    ++ + +F+RP++     + +Y +DI ++Y+S
Sbjct: 833  DAPEPFRVGRIKEIFCHRRSNGKSDTADVKLTLYKFYRPENTHKGVKASYHADINQLYWS 892

Query: 1023 EETHLIFVEAIAGKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPA 1076
            +E   + +  + G+C++    D+       +   P  F   +F E  +  SK S +  P 
Sbjct: 893  DEEVTVRMSEVLGRCQIEYAEDLIESVQDYSSGGPDRF---YFLEAYNARSK-SFEDPPN 948

Query: 1077 HIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEG 1136
            H +   S+          + KGK  + + +  V  Q    +     TLD+F+GCGGLSEG
Sbjct: 949  HAR---SAVHKGKGKGKGKGKGKASQEQQDSNVGPQ--MPKVPKYRTLDVFSGCGGLSEG 1003

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEA 1196
              Q+GIS + WAIE  EPA +AF+LN+P + +   +CNV+L+ VM              +
Sbjct: 1004 FHQAGISESLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------S 1049

Query: 1197 AELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFAD 1256
             E   SL +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  +++++L + D
Sbjct: 1050 GEKTNSLGQK----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSYLRYXD 1105

Query: 1257 YFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIW 1316
            Y++P++FLLENVRNFVSF      +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I 
Sbjct: 1106 YYRPKFFLLENVRNFVSFKNSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1165

Query: 1317 AASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLP 1374
            AA+P + LP +PEP+HVFA  A  L +++ D  +Y +  +  NG  +R +TVRD++ DLP
Sbjct: 1166 AAAPGEKLPRYPEPLHVFAPRACSLSVVV-DEKRYVSNVTRGNGGIYRTITVRDSMSDLP 1224

Query: 1375 AVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGAD 1432
             + NGAS   + Y  +P SWFQ++IRG     +L DHI K+M+ L   R + IP  PG+D
Sbjct: 1225 EIRNGASALEISYNGEPQSWFQRQIRGTQYQPILRDHICKDMSALVEGRMRHIPLAPGSD 1284

Query: 1433 WHDLPDEKVKLSTG----------------------------------------QVVDLI 1452
            W DLP+ +V+L  G                                        Q   LI
Sbjct: 1285 WRDLPNIEVRLKDGTMTKKLRYTHTDKKNGRSSTGALRGVCTCAGGKPCDPADRQFNTLI 1344

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
            PWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARS
Sbjct: 1345 PWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARS 1404

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            QGFPD+Y+F G+I  KHRQ+GNAVPP L+ A+G ++K+ V
Sbjct: 1405 QGFPDTYRFFGNILDKHRQVGNAVPPPLSRAIGLEIKKCV 1444



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  R+ +F ++D+ G   P +   I+   +L+ S  + P+ + +    + GV  +  G
Sbjct: 249 DLPQHRITNFSVYDKRGHLCPFDSGLIEKNVELYFSCAVKPIYDDNPC-LDGGVPAKKLG 307

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  ++P+  Y   + L  EK      V + L K 
Sbjct: 308 PINAWWITGFDGGEKALIGFTTAFADYILMQPSEEYAPIFALMQEKIYMSKIVVEFLQK- 366

Query: 225 SGGNSDCSIDELLAGVVRSMSGS----KCFRGGVSIKDFVISQGEFIFNQLIGLDETSKK 280
              N D + ++LL  +  ++  +     CF      +D ++   +F+  Q+   DE    
Sbjct: 367 ---NPDVTYEDLLNKIETTVPPAGLNFNCF-----TEDTLLRHAQFVVEQVESYDEAGDS 418

Query: 281 NDQKFAELPVLVAL 294
           ++Q     P +  L
Sbjct: 419 DEQPIIVTPCMRDL 432


>gi|40538748|ref|NP_571264.1| DNA (cytosine-5)-methyltransferase 1 [Danio rerio]
 gi|19263095|gb|AAL86596.1|AF483203_1 DNA (cytosine-5)-methyltransferase [Danio rerio]
          Length = 1499

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 316/917 (34%), Positives = 471/917 (51%), Gaps = 146/917 (15%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE ++  G    Y K  V  EV+ +G  V V  D  D    +Y          G K
Sbjct: 611  ISWVGEPLKTEGKKEYYMKVRVENEVLEVGDCVSVSPD--DPSHPLYLARITALWDDGEK 668

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH     RG+ TVLG +++  E+FL ++C D++L  I  K  V     S  W  +   D
Sbjct: 669  MFHAHWFCRGTDTVLGESSDPLELFLVDECEDMQLSFIHGKVNVFYKAPSENWYMEGGMD 728

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP---VDSMGLGVGSCHACGT 912
                        E+ K      E +   L++    A F  P     S       C +C T
Sbjct: 729  ------------EDIKVIDDDGESFFYQLHYEGECARFETPPKVTPSEDCKYKFCASC-T 775

Query: 913  KESEKEKETF--------KVHSKTSFVYGTA-----EYFVHDYVYISPHHFTW------- 952
            +  E+E E+            S +   YG       +Y V D VY+ P  F +       
Sbjct: 776  RNKEREAESVPHAYEPLEDEESDSKVFYGLVNYKGEQYKVGDSVYLPPEAFNFVVKAASP 835

Query: 953  -------DKAEGETFK----------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
                   D  + + +            G N+   +P+ + ++ EI   K     +  +T+
Sbjct: 836  VKRSHRKDDVDEDLYPEYYRKSSDYIKGSNLDAPQPFRIGRIKEIFCNKR-SNGKPDTTE 894

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++     + AY SDI ++Y+S+E   + +  +  +C V    D+     
Sbjct: 895  IKLRLYKFYRPENTHKGPKGAYHSDINQLYWSDEEATVSMTEVLTRCRVEYAEDLVESVQ 954

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
              +   P  F   +F E  +  +K S +  P H +   + G    +   + K  +     
Sbjct: 955  DYSNKGPDRF---YFLEAYNAKTK-SFEDPPNHARSAVNKGKGKGKGKGKGKGKQ----- 1005

Query: 1105 DELEVEKQGGASQEN---HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
                    G  +QE     L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+L
Sbjct: 1006 ---RSRTTGSGAQEPVVPKLRTLDVFSGCGGLSEGFHQAGISETHWAIEMWDPAAQAFRL 1062

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN 1221
            N+P + +   +CNV+L+ VM              + E   SL +     LP  G V+ + 
Sbjct: 1063 NNPGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLC 1104

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            GGPPCQGFSGMNRFN  T+SK +  +++++LS+ DY++P++FLLENVRNFVSF +    +
Sbjct: 1105 GGPPCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKRSMVLK 1164

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
            LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA     +
Sbjct: 1165 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPRYPEPLHVFAPRACSL 1224

Query: 1342 MLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
             ++ D  +Y +  +  NG  +R +TVRDT+ DLP + NGA+   + Y  +P SWFQ++IR
Sbjct: 1225 SVAVDEKKYVSNVTRGNGGIYRTITVRDTMSDLPEIRNGAAALEISYNGEPQSWFQRQIR 1284

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1285 GSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLRDGTTTKKLRYTHSD 1344

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1345 KKNGRSGTGALRGVCSCSEGKQCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1404

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G++  KHRQ+GNAVPP
Sbjct: 1405 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNVLDKHRQVGNAVPP 1464

Query: 1539 TLAFALGRKLKEAVESK 1555
             L+  +G ++K+ V  K
Sbjct: 1465 PLSETIGLEVKKCVLEK 1481



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++ +F ++D+ G   P +   I+   +L+ S  + P+ + +    + GV  +  G
Sbjct: 282 DLPQHKITNFSVYDKRGHLCPFDSGLIEKNVELYFSCAVKPIYDDNPC-MDGGVPAKKLG 340

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  + P+  Y   + L  EK      V + L K 
Sbjct: 341 PINAWWITGFDGGEKALIGFTTAFADYILMDPSEEYSAIFALMQEKICMSKIVVEFLQK- 399

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D + ++LL  +  ++  +         +D ++   +F+  Q+   DE    ++Q 
Sbjct: 400 ---NQDATYEDLLNKIETTVPPAG-LNFNRFTEDTLLRHAQFVVEQVESYDEAGDSDEQP 455

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 456 IIITPCMRDL 465


>gi|149020536|gb|EDL78341.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_c [Rattus
            norvegicus]
          Length = 1634

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 318/909 (34%), Positives = 474/909 (52%), Gaps = 137/909 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+ +     Y K  +  E + +G  V V  D+  +   +  V  ++E  
Sbjct: 744  NKDRISWLGEPVKIEENRTYYWKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDK 803

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQ 851
             G ++FH      G+ TVLG T++  E+FL  +C +++L  I   V V  R  S  W  +
Sbjct: 804  NG-QMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYRGPSPNWAME 862

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K     T +Y    ++ +  A F  P  +          C 
Sbjct: 863  GGMD----PEAMLPGAEDGK-----TYFY--QFWYSQDYARFESPPKTQPTEDNKHKFCL 911

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 912  SCIRLAELRQKEMPKVLEQLEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKMAS 971

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K+ K  +V    
Sbjct: 972  PMKRSKRDPVNENLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGKK-KGGKVNEAD 1030

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S +  Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1031 IKIRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTVEYGEDLLESIQ 1090

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
              +   P  F   +F E  +  +K S +  P H +   + G    +   + K       E
Sbjct: 1091 DYSQGGPDRF---YFLEAYNSKTK-SFEDPPNHARSPGNKGKGKGKGKGKGKPQVSEPKE 1146

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             E        A +   L TLD+F+GCGGL+EG  Q+GIS T WAIE  EPA +AF+LN+P
Sbjct: 1147 PE-------AAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNNP 1199

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + GGP
Sbjct: 1200 GTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCGGP 1241

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL
Sbjct: 1242 PCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTL 1301

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIM 1342
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L ++
Sbjct: 1302 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVV 1361

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
            + D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+
Sbjct: 1362 VDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASAPEISYNGEPQSWFQRQLRGS 1420

Query: 1403 --MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD---------- 1450
                +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G + +          
Sbjct: 1421 HYQPILRDHICKDMSALVAARMRHIPLSPGSDWRDLPNIQVRLRDGVITNKLRYTFHDTK 1480

Query: 1451 ------------------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                                          LIPWCLP+T  RHN W GL+GRL+W+G F 
Sbjct: 1481 NGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFS 1540

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +HRQ+GNAVPP L
Sbjct: 1541 TTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGNAVPPPL 1600

Query: 1541 AFALGRKLK 1549
            A A+G ++K
Sbjct: 1601 AKAIGLEIK 1609



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG+   + E +    E GV  +  G I  W ISG++ G   +I  ST  A+Y  ++
Sbjct: 451 ELYFSGVAKAIHEENP-SVEGGVNGKNLGPINQWWISGFDGGEKALIGFSTAFAEYFLME 509

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  Y   + L  EK    I + K + +    N D   ++L+  +  ++  S        
Sbjct: 510 PSPEYAPIFGLMQEK----IYISKIVVEFLQSNPDAVYEDLINKIETTVPPS-AINVNRF 564

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+ +Q+   D+    ++      P + +L
Sbjct: 565 TEDSLLRHAQFVVSQVESYDDAKDDDETPIFLSPCMRSL 603


>gi|214010196|ref|NP_445806.3| DNA (cytosine-5)-methyltransferase 1 [Rattus norvegicus]
 gi|149020535|gb|EDL78340.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_b [Rattus
            norvegicus]
          Length = 1621

 Score =  504 bits (1299), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 318/909 (34%), Positives = 474/909 (52%), Gaps = 137/909 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+ +     Y K  +  E + +G  V V  D+  +   +  V  ++E  
Sbjct: 731  NKDRISWLGEPVKIEENRTYYWKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDK 790

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQ 851
             G ++FH      G+ TVLG T++  E+FL  +C +++L  I   V V  R  S  W  +
Sbjct: 791  NG-QMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYRGPSPNWAME 849

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K     T +Y    ++ +  A F  P  +          C 
Sbjct: 850  GGMD----PEAMLPGAEDGK-----TYFY--QFWYSQDYARFESPPKTQPTEDNKHKFCL 898

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 899  SCIRLAELRQKEMPKVLEQLEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKMAS 958

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K+ K  +V    
Sbjct: 959  PMKRSKRDPVNENLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGKK-KGGKVNEAD 1017

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S +  Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 1018 IKIRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTVEYGEDLLESIQ 1077

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
              +   P  F   +F E  +  +K S +  P H +   + G    +   + K       E
Sbjct: 1078 DYSQGGPDRF---YFLEAYNSKTK-SFEDPPNHARSPGNKGKGKGKGKGKGKPQVSEPKE 1133

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             E        A +   L TLD+F+GCGGL+EG  Q+GIS T WAIE  EPA +AF+LN+P
Sbjct: 1134 PE-------AAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNNP 1186

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + GGP
Sbjct: 1187 GTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCGGP 1228

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL
Sbjct: 1229 PCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTL 1288

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIM 1342
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L ++
Sbjct: 1289 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVV 1348

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
            + D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+
Sbjct: 1349 VDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASAPEISYNGEPQSWFQRQLRGS 1407

Query: 1403 --MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD---------- 1450
                +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G + +          
Sbjct: 1408 HYQPILRDHICKDMSALVAARMRHIPLSPGSDWRDLPNIQVRLRDGVITNKLRYTFHDTK 1467

Query: 1451 ------------------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                                          LIPWCLP+T  RHN W GL+GRL+W+G F 
Sbjct: 1468 NGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFS 1527

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +HRQ+GNAVPP L
Sbjct: 1528 TTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGNAVPPPL 1587

Query: 1541 AFALGRKLK 1549
            A A+G ++K
Sbjct: 1588 AKAIGLEIK 1596



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG+   + E +    E GV  +  G I  W ISG++ G   +I  ST  A+Y  ++
Sbjct: 438 ELYFSGVAKAIHEENP-SVEGGVNGKNLGPINQWWISGFDGGEKALIGFSTAFAEYFLME 496

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  Y   + L  EK    I + K + +    N D   ++L+  +  ++  S        
Sbjct: 497 PSPEYAPIFGLMQEK----IYISKIVVEFLQSNPDAVYEDLINKIETTVPPS-AINVNRF 551

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+ +Q+   D+    ++      P + +L
Sbjct: 552 TEDSLLRHAQFVVSQVESYDDAKDDDETPIFLSPCMRSL 590


>gi|149020534|gb|EDL78339.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Rattus
            norvegicus]
          Length = 1503

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 318/909 (34%), Positives = 474/909 (52%), Gaps = 137/909 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+ +     Y K  +  E + +G  V V  D+  +   +  V  ++E  
Sbjct: 613  NKDRISWLGEPVKIEENRTYYWKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDK 672

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQ 851
             G ++FH      G+ TVLG T++  E+FL  +C +++L  I   V V  R  S  W  +
Sbjct: 673  NG-QMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYRGPSPNWAME 731

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K     T +Y    ++ +  A F  P  +          C 
Sbjct: 732  GGMD----PEAMLPGAEDGK-----TYFY--QFWYSQDYARFESPPKTQPTEDNKHKFCL 780

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 781  SCIRLAELRQKEMPKVLEQLEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKMAS 840

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K+ K  +V    
Sbjct: 841  PMKRSKRDPVNENLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGKK-KGGKVNEAD 899

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S +  Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 900  IKIRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTVEYGEDLLESIQ 959

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
              +   P  F   +F E  +  +K S +  P H +   + G    +   + K       E
Sbjct: 960  DYSQGGPDRF---YFLEAYNSKTK-SFEDPPNHARSPGNKGKGKGKGKGKGKPQVSEPKE 1015

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             E        A +   L TLD+F+GCGGL+EG  Q+GIS T WAIE  EPA +AF+LN+P
Sbjct: 1016 PE-------AAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNNP 1068

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + GGP
Sbjct: 1069 GTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCGGP 1110

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL
Sbjct: 1111 PCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTL 1170

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIM 1342
              L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L ++
Sbjct: 1171 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVV 1230

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
            + D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+
Sbjct: 1231 VDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASAPEISYNGEPQSWFQRQLRGS 1289

Query: 1403 --MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD---------- 1450
                +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G + +          
Sbjct: 1290 HYQPILRDHICKDMSALVAARMRHIPLSPGSDWRDLPNIQVRLRDGVITNKLRYTFHDTK 1349

Query: 1451 ------------------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                                          LIPWCLP+T  RHN W GL+GRL+W+G F 
Sbjct: 1350 NGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFS 1409

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +HRQ+GNAVPP L
Sbjct: 1410 TTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGNAVPPPL 1469

Query: 1541 AFALGRKLK 1549
            A A+G ++K
Sbjct: 1470 AKAIGLEIK 1478



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG+   + E +    E GV  +  G I  W ISG++ G   +I  ST  A+Y  ++
Sbjct: 320 ELYFSGVAKAIHEENP-SVEGGVNGKNLGPINQWWISGFDGGEKALIGFSTAFAEYFLME 378

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  Y   + L  EK    I + K + +    N D   ++L+  +  ++  S        
Sbjct: 379 PSPEYAPIFGLMQEK----IYISKIVVEFLQSNPDAVYEDLINKIETTVPPS-AINVNRF 433

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+ +Q+   D+    ++      P + +L
Sbjct: 434 TEDSLLRHAQFVVSQVESYDDAKDDDETPIFLSPCMRSL 472


>gi|315583649|pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free State
 gi|377656587|pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To Hemimethylated
            Cpg Dna
 gi|377656588|pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To Hemimethylated
            Cpg Dna
          Length = 873

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 315/911 (34%), Positives = 479/911 (52%), Gaps = 141/911 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
            +K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 1    SKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 60

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 61   NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 120

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 121  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 169

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 170  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 229

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 230  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 287

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 288  IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 347

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 348  DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 403

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 404  PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 454

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 455  NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 496

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 497  GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 556

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 557  TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 616

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 617  VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 675

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 676  GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 735

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 736  VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 795

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 796  FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 855

Query: 1539 TLAFALGRKLK 1549
             LA A+G ++K
Sbjct: 856  PLAKAIGLEIK 866


>gi|315583643|pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
            Dna
 gi|315583644|pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
            Dna
          Length = 954

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 316/916 (34%), Positives = 480/916 (52%), Gaps = 141/916 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W G+ ++ +     Y+K  +  E++ +G  V V  D+  +   +  V  ++E  
Sbjct: 82   NKDRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDK 141

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
             G  +FH      G+ TVLG T++  E+FL  +C +++L  I  K  V+    S  W  +
Sbjct: 142  NGQMMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAME 201

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K        Y   L++ +  A F  P  +          C 
Sbjct: 202  GGTD----PETTLPGAEDGKT-------YFFQLWYNQEYARFESPPKTQPTEDNKHKFCL 250

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 251  SCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVAS 310

Query: 959  TFK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K                        G N+   +PY + ++ EI   K  K+ +V    
Sbjct: 311  PVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGK--KKGKVNEAD 368

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP---- 1046
            +K+R  +F+RP++   S   +Y +DI  +Y+S+E  ++    + G+C V    D+     
Sbjct: 369  IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 428

Query: 1047 --ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIE 1102
              +   P  F   +F E  +  +K + +  P H +       G    +   + +  +  E
Sbjct: 429  DYSQGGPDRF---YFLEAYNSKTK-NFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKE 484

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
             E  +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN
Sbjct: 485  PEAAIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLN 535

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            +P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + G
Sbjct: 536  NPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCG 577

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            GPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +L
Sbjct: 578  GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 637

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELK 1340
            TL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L 
Sbjct: 638  TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 697

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
            +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS + + Y  +P+SWFQ+++R
Sbjct: 698  VVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLR 756

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 757  GSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHD 816

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 817  VKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 876

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPDSY+F G+I  +HRQ+GNAVPP
Sbjct: 877  FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPP 936

Query: 1539 TLAFALGRKLKEAVES 1554
             LA A+G ++K  + S
Sbjct: 937  PLAKAIGLEIKLCLLS 952


>gi|340373134|ref|XP_003385097.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Amphimedon
            queenslandica]
          Length = 1444

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 316/926 (34%), Positives = 476/926 (51%), Gaps = 137/926 (14%)

Query: 739  ITWEGEC-VRKSGLALYKKAIVHG-EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC 796
            + W GE    + G + Y + +++  E V L   V V  +  D    +  +  M+E + G 
Sbjct: 545  VEWIGEPDFVEGGKSYYTEVLINNKEKVCLYDVVSVCPEVPDDPLYLTRIMSMYEDSNGK 604

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRS--VPWGHQHRK 854
            K+FHG    R + TVLG T + RE+FL + C D  L  I   V V+ +     W     +
Sbjct: 605  KMFHGWWFHRSTDTVLGETGDPRELFLIDDCEDNPLGAIMDKVEVEYKPPVSNWFMCGGE 664

Query: 855  DIANADKVDRARAEERKKKGLPTEYYCKSLY----WPERGAFFILPVDSMGLGVG---SC 907
            ++++    D    EE  K     +YY +SL      P     +++  D+     G    C
Sbjct: 665  EVSD----DEKEIEEDGKTFFVQKYYDQSLARFEDIPSEYIRYLISDDAHPPTDGFIPQC 720

Query: 908  HACGTKESEK-----------EKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAE 956
             +C  +   K           E E  K+ + +SF      Y + D VY+SPH +++   +
Sbjct: 721  ASCERRNHMKTVHSAVPINKIESEKPKITNYSSFQLNEESYSIGDCVYLSPHTYSFPNVK 780

Query: 957  GETFKA-----------------------------GRNV-GLKPYVVCQLLEIIVPKEPK 986
              +  A                             G N+    P+ + Q+LEI       
Sbjct: 781  KTSGTAANKKQKKEEEEFDESEYPEKYRKVSDYVKGSNIDSPSPFQIGQVLEIFSKSLGG 840

Query: 987  RA--EVKSTQVKVRRFFRPDDISA--EKAYCSDIREVYYSE-ETHLIFVEAIAGKCEVRK 1041
            +     K   +K+R ++RP D     E     D+  +Y+S+  T ++  + + GKC V+ 
Sbjct: 841  KLIDNNKIVHIKLRMYYRPQDTHKGDEATAQYDLNLLYWSDLVTTVVAGDVVCGKCFVKF 900

Query: 1042 KNDIPA------CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI--KLRYSSGSLDSEAAS 1093
            K DI         N P    H +F E     +K   +  P H   K +          A 
Sbjct: 901  KEDITEDIDSYFSNKP---NHFYFVEAYCADTK-EFEDPPVHAMNKGKGKGKGKGKGPAK 956

Query: 1094 RRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEE 1153
              K+       D+ + ++    S    L  LD+FAGCGGLSEG  Q+G++ + WA+E +E
Sbjct: 957  GSKESIATTSTDDDKKDEITPDSSFKKLRMLDVFAGCGGLSEGFHQAGVADSCWAVEIDE 1016

Query: 1154 PAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPL 1213
            PA +AF+LN+ ++ +  ++CN++L  VME          T+   +L           LP 
Sbjct: 1017 PAAQAFRLNNSQTTVFTDDCNILLSLVMEG-------AKTNSRGQL-----------LPQ 1058

Query: 1214 PGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS 1273
             G V+ + GGPPCQGFSGMNRFN   +S+ +  +++++LSF +Y++PR+FLLENVRNFVS
Sbjct: 1059 KGDVELLCGGPPCQGFSGMNRFNSREYSQFKNSLVISYLSFCEYYRPRFFLLENVRNFVS 1118

Query: 1274 FNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV 1333
            F K    +LTL  L++MGYQ  FG+L+AG +GV Q+R+RA I AA+P + LP +P P HV
Sbjct: 1119 FKKSMVLKLTLRCLVKMGYQCTFGVLQAGQYGVPQTRRRAIILAAAPGEKLPHFPNPTHV 1178

Query: 1334 FA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDP 1391
            F+  A +L ++++D     ++R   + AP+R +TVRD++ DLP + NG++   M Y  +P
Sbjct: 1179 FSPRACQLTVVVNDIKYEGSIR--MDSAPYRTITVRDSMSDLPHIKNGSAVRSMNYNGEP 1236

Query: 1392 VSWFQKRIRGNM--AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS----- 1444
               +Q+ +RGN    VL DHI KEMN L   R + IP  PG+DW DLP++ ++LS     
Sbjct: 1237 HCHYQRLMRGNQHQPVLYDHICKEMNPLVAARMRFIPIGPGSDWRDLPNKCIRLSDGTTA 1296

Query: 1445 ---------------------------TGQVVD--------LIPWCLPNTAKRHNQWKGL 1469
                                       TGQ  D        LIPWCLP+T  RHN W GL
Sbjct: 1297 PKLQYTHHDKKNGRAKNKSLRGVCPCATGQPCDSSYRQYGTLIPWCLPHTGNRHNHWAGL 1356

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            +GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+++F G+I  KH
Sbjct: 1357 YGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTFRFFGTILDKH 1416

Query: 1530 RQIGNAVPPTLAFALGRKLKEAVESK 1555
            RQ+GNAVPP LA A+G ++K +VE K
Sbjct: 1417 RQVGNAVPPPLAKAIGLEIKRSVEKK 1442



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 117/286 (40%), Gaps = 20/286 (6%)

Query: 12  SNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEK--MKKLSQDSEEPRKRPKRMAACT 69
           SN   A  +   K+   +P  ++P  K S + Q  K       + S++PR +   +    
Sbjct: 137 SNGTSAATNGNNKSHDLRPHDDIPANKTSEAPQSSKPPCTYCKRSSDDPRLK-IFIGDPP 195

Query: 70  DFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQP 129
           +  ++ + +++ S  V +   + A D++    +T     D+     N  + H + GL + 
Sbjct: 196 NANDEFITLADPSLSVLSADQESALDDVPQHKITGFSVYDK-----NHHLCHFDTGLVE- 249

Query: 130 LEMLEIDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDI 188
               +  +LF SG + P+ +  + +   G+     G I SW I+G++ G   ++  ST  
Sbjct: 250 ----KNVELFFSGWVKPIYDE-NPDPSDGIPTRQLGPINSWWIAGFDGGEKALVGFSTAY 304

Query: 189 ADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSK 248
           A+Y  +  +  Y +      EK      + + L +      +  ++++   V     G  
Sbjct: 305 AEYILMDASDDYAEIMASVQEKIYLSKILIEYLEEFPAATYEDLLNKIQTSVPPQSIGCT 364

Query: 249 CFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            F      +D ++   +FI  Q+   D+   +++      P + AL
Sbjct: 365 SF-----TEDSLLRHAQFIVEQVESYDQYCDEDEDLLLVSPCMRAL 405


>gi|4160670|dbj|BAA37118.1| DNA cytosine 5 methyltransferase [Rattus rattus]
          Length = 1622

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 317/910 (34%), Positives = 473/910 (51%), Gaps = 138/910 (15%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+ +     Y K  +  E + +G  V V  D+  +   +  V  ++E  
Sbjct: 731  NKDRISWLGEPVKIEENRTYYWKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDK 790

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQ 851
             G ++FH      G+ TVLG T++  E+FL  +C +++L  I   V V  R  S  W  +
Sbjct: 791  NG-QMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYRGPSPNWAME 849

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K     T +Y    ++ +  A F  P  +          C 
Sbjct: 850  GGMD----PEAMLPGAEDGK-----TYFY--QFWYSQDYARFESPPKTQPAEDNKHKFCL 898

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 899  SCIRLAELRQKEMPKVLEQLEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKMAS 958

Query: 959  TFK------------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKST 993
              K                         G N+   +PY + ++ EI   K+ K  +V   
Sbjct: 959  PMKRSKRDPVNENPVPRDTYRKYSDYIKGSNLDAPEPYRIGRIKEIYCGKK-KGGKVNEA 1017

Query: 994  QVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP--- 1046
             +K+R  +F+RP++   S +  Y +DI  +Y+S+E  ++    + G+C V    D+    
Sbjct: 1018 DIKIRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTVEYGEDLLESI 1077

Query: 1047 ---ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEG 1103
               +   P  F   +F E  +  +K S +  P H +   + G    +   + K       
Sbjct: 1078 QDYSQGGPDRF---YFLEAYNSKTK-SFEDPPNHARSPGNKGKGKGKGKGKGKPQVSEPK 1133

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            E E        A +   L TLD+F+GCGGL+EG  Q+GIS T WAIE  EPA +AF+LN+
Sbjct: 1134 EPE-------AAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNN 1186

Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
            P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + GG
Sbjct: 1187 PGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCGG 1228

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRN VSF +    +LT
Sbjct: 1229 PPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNSVSFRRSMVLKLT 1288

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKI 1341
            L  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +
Sbjct: 1289 LRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSV 1348

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
            ++ D    S +   ++G PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG
Sbjct: 1349 VVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASAPEISYNGEPQSWFQRQLRG 1407

Query: 1402 N--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD--------- 1450
            +    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G + +         
Sbjct: 1408 SHYQPILRDHICKDMSALVAARMRHIPLSPGSDWRDLPNIQVRLRDGVITNKLRYTFHDT 1467

Query: 1451 -------------------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                                           LIPWCLP+T  RHN W GL+GRL+W+G F
Sbjct: 1468 KNGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFF 1527

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
             T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +HRQ+GNAVPP 
Sbjct: 1528 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGNAVPPP 1587

Query: 1540 LAFALGRKLK 1549
            LA A+G ++K
Sbjct: 1588 LAKAIGLEIK 1597



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG+   + E +    E GV  +  G I  W ISG++ G   +I  ST  A+Y  ++
Sbjct: 438 ELYFSGVAKAIHEENP-SVEGGVNGKNLGPINQWWISGFDGGEKALIGFSTAFAEYFLME 496

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  Y   + L  EK    I + K + +    N D   ++L+  +  ++  S        
Sbjct: 497 PSPEYAPIFGLMQEK----IYISKIVVEFLQSNPDAVYEDLINKIETTVPPS-AINVNRF 551

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+ +Q+   D+    ++      P + +L
Sbjct: 552 TEDSLLRHAQFVVSQVESYDDAKDDDETPIFLSPCMRSL 590


>gi|348509192|ref|XP_003442135.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Oreochromis
            niloticus]
          Length = 1505

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 371/1303 (28%), Positives = 616/1303 (47%), Gaps = 231/1303 (17%)

Query: 402  DELLA-YDSDYDSCD-IDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGK 459
            DE L+ +DS+ D  +  + LP+  + ++S+Y+    L   +   ++  +++++      K
Sbjct: 266  DERLSLFDSNEDGFESYEDLPQHKITNFSVYDKRGHLCPFDSGLIE--KNVELYFSCVVK 323

Query: 460  MISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIY-LSSIKEWMIEF--GSSMIFISIRTD 516
             I D+    C+D                GG P   L  I  W I    G     I   T 
Sbjct: 324  PIYDDNP--CMD----------------GGVPAKKLGPINAWWITGFDGGEKALIGFTTA 365

Query: 517  LAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQH 576
             A Y L +PS++YAP +  + +   ++  ++  L++    +   + D++ ++        
Sbjct: 366  FADYILMQPSEEYAPIFALMQEKIYMSKIVVEFLQKNPDAT---YEDLLNKIE------- 415

Query: 577  SYISSDPAAV------ERYVVVHGQIVLQLFAEY-----PDEQ-------IKKCAFIIGL 618
               +  PA +      E  ++ H Q V++    Y      DEQ       ++    + G+
Sbjct: 416  --TTVPPAGLNFNCFTEDTLLRHAQFVVEQVESYDEAGDSDEQPIIVTPCMRDLIKLAGV 473

Query: 619  MKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYS 678
                      + +    K++K         S GP         +ATTT+L+ +I+  ++S
Sbjct: 474  TLGKRRAARRQAIRHPTKIEKD--------SKGPT--------KATTTKLVYQIFDAFFS 517

Query: 679  NYSPEDGKEET-------ACEANEDEEVEEQGENEE----DDTEEEKLISEERQISCSVA 727
            +   ++ KE          CE  +  +  +    ++      + + K   ++R+   ++A
Sbjct: 518  DQIEQNDKESAMKRQRCGVCEVCQSPDCGKCAACKDMIKFGGSGKSKQACKQRRCP-NLA 576

Query: 728  VQI------------------------KSRSTKKEITWEGECVRKSGLA-LYKKAIVHGE 762
            V+                         + + T+ ++TW GE +   G    Y+K  ++ E
Sbjct: 577  VKEAEDDENIEEEDVPVEKPKKVPHAKRKKQTQCKLTWIGESIHTEGKKQYYRKVSLNDE 636

Query: 763  VVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVF 822
            ++ +G  V V  ++      +  +  M+E   G K+FH     RG  TVLG T++  E+ 
Sbjct: 637  LLEVGDCVSVSSEDPSIPLYLARITSMWEDNNG-KMFHAHWFLRGIDTVLGETSDPLELV 695

Query: 823  LANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYY 880
            + ++C D+ L  +  K  V+    S  W  +   D      VD    E+  K      ++
Sbjct: 696  IVDECEDMLLNYVQGKVNVMYKAPSNNWFMEGGMD------VDLKVIEDDGKS-----FF 744

Query: 881  CKSLYWPERGAFFILPVDSMG-----LGVGSCHACGTKESEKEKETFKV----HSKTSFV 931
             +  Y  E   F + P  S          GSC     +E   +   F+        T  +
Sbjct: 745  YQFWYDTEYARFEMPPKTSPSEECKFKFCGSCVRIKEREENDKPHVFEPLENEDHDTKAL 804

Query: 932  YGTA-----EYFVHDYVYISPHHFTWDKAEGETFK------------------------A 962
            Y  A     ++ V D VY+ P  F +        K                         
Sbjct: 805  YAMACFKGEQFRVGDSVYLPPEAFNFSVKPASPVKRSHRKDDVDEDLYPEYYRKSSDYIK 864

Query: 963  GRNV-GLKPYVVCQLLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIRE 1018
            G N+   +P+ V ++ EI   +    + ++   ++++ +F+RP++     + +Y +DI +
Sbjct: 865  GSNLDAPEPFRVGRIKEIFCHRRSNGKPDMSDVKLRLYKFYRPENTHKGVKASYHTDINQ 924

Query: 1019 VYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPA 1076
            +Y+S+E   + +  + G+C+V    D+     +  ++    F+    +     S +  P 
Sbjct: 925  LYWSDEEVTVNMGDVLGRCQVEYAEDLNESIQDYSSVGPDRFYFLEAYSAKAKSFEDPPN 984

Query: 1077 HIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEG 1136
            H +     G    +   + K       +++L+ + Q       +  TLD+F+GCGGLSEG
Sbjct: 985  HARSTVHKGKGKGKGKGKGKGKASA-AQEQLDSQPQPKPKVPKY-RTLDVFSGCGGLSEG 1042

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEA 1196
              Q+GIS T WAIE  EPA +AF+LN+P + +   +CNV+L+ VM              +
Sbjct: 1043 FHQAGISETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------S 1088

Query: 1197 AELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFAD 1256
             E   SL +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  +++++LS+ D
Sbjct: 1089 GEKTNSLGQK----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCD 1144

Query: 1257 YFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIW 1316
            Y++P++FLLENVRNFVSF      +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I 
Sbjct: 1145 YYRPKFFLLENVRNFVSFKNSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1204

Query: 1317 AASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLP 1374
            AA+P + LP +PEP+HVFA  A  L +++ +    S V +  NG  +R +TVRDT+ DLP
Sbjct: 1205 AAAPGEKLPRYPEPLHVFAPRACSLSVVVGEKRYVSNV-TRGNGGIYRTITVRDTMSDLP 1263

Query: 1375 AVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGAD 1432
             + NGA+   + Y  +P SWFQ++IRG     +L DHI K+M+ L   R + IP  PG+D
Sbjct: 1264 EIRNGAAALEISYNGEPQSWFQRQIRGTQYQPILRDHICKDMSALVEGRMRYIPLAPGSD 1323

Query: 1433 WHDLPDEKVKLSTG----------------------------------------QVVDLI 1452
            W DLP+ +V+L  G                                        Q   LI
Sbjct: 1324 WRDLPNIEVRLKDGTLTKKLRYTHHDKKNGRSGTGALRGVCTCAGGKPCDPSDRQFNTLI 1383

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
            PWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARS
Sbjct: 1384 PWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARS 1443

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            QGFPD+Y+F G+I  KHRQ+GNAVPP L+ A+G ++K  +  +
Sbjct: 1444 QGFPDTYRFFGNILDKHRQVGNAVPPPLSRAIGLEIKRCITER 1486



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 18/194 (9%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++ +F ++D+ G   P +   I+   +L+ S ++ P+ + +    + GV  +  G
Sbjct: 284 DLPQHKITNFSVYDKRGHLCPFDSGLIEKNVELYFSCVVKPIYDDNPC-MDGGVPAKKLG 342

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  ++P+  Y   + L  EK      V + L K 
Sbjct: 343 PINAWWITGFDGGEKALIGFTTAFADYILMQPSEEYAPIFALMQEKIYMSKIVVEFLQK- 401

Query: 225 SGGNSDCSIDELLAGVVRSMSGS----KCFRGGVSIKDFVISQGEFIFNQLIGLDETSKK 280
              N D + ++LL  +  ++  +     CF      +D ++   +F+  Q+   DE    
Sbjct: 402 ---NPDATYEDLLNKIETTVPPAGLNFNCF-----TEDTLLRHAQFVVEQVESYDEAGDS 453

Query: 281 NDQKFAELPVLVAL 294
           ++Q     P +  L
Sbjct: 454 DEQPIIVTPCMRDL 467


>gi|405116965|gb|AFR91943.1| DNA cytosine-5-methyltransferase 1 [Patiria pectinifera]
          Length = 1592

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 353/1203 (29%), Positives = 578/1203 (48%), Gaps = 189/1203 (15%)

Query: 488  GGFPI-YLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAI 544
            GG P   +  I EW      G     I   T  A Y L  PS+ Y P+++ + +   ++ 
Sbjct: 412  GGIPTKAMGPINEWWTAGFDGGEKALIGFGTAFAEYILMAPSEAYTPFWKAMQEKIYMSK 471

Query: 545  SIITMLKEQTRVSRLSFTDVIKRL-SEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAE 603
             +I  ++         + D+I ++ + +  +  S  + D       ++ H Q V++    
Sbjct: 472  ILIEFIQNNPEAE---YEDLINQIETTVPPENCSSFTEDS------LLRHAQFVVEQVES 522

Query: 604  YPDEQIKKCAFIIGL--MKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVM 661
            Y +   ++   +I    M+ + +      L K++ V+K+       A   P    K+   
Sbjct: 523  YDEGADEEETLLITTPCMRDLIKLAGVT-LGKRRAVRKA-------ARKAPKAEKKQMRS 574

Query: 662  QATTTRLINRIWGEYYSNYSPED------------------------------------G 685
             AT T L+  I+  ++     ++                                    G
Sbjct: 575  MATVTPLVRNIFDIFFKGQIQKEQGNIIRKRRCGICEVCQAADCGKCVACQDMIKFGGTG 634

Query: 686  KEETACEANE--DEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEG 743
            + + AC +    +  V+E  +N++ + EEE+ + + R+     A++ K R  +  + W G
Sbjct: 635  RTKQACISRRCPNMAVKEAEDNDDTENEEEENVIDTRRRGHKTALETK-RKKRTPVDWLG 693

Query: 744  ECVRKSG-LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGI 802
            + ++  G  + Y  A+V  E V  G  VLV  D+ ++   I  + YMF+  G   +FH  
Sbjct: 694  DPIKVEGSRSYYASALVGDEKVDAGDFVLVHPDDPERPLFIAKIVYMFQEKGDDLMFHAH 753

Query: 803  IMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKV 862
                GS TVLG T++  E+F  ++C+D  L  +     V  +           I N +  
Sbjct: 754  WFMYGSETVLGETSDPLELFQVDECQDTYLASVSSKCKVIYKEASPDWYSLGGIENPE-- 811

Query: 863  DRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGTKESEKEK 919
            D A  +E   +     ++ +  Y PE   F  +       G      C +C   E  +++
Sbjct: 812  DDAVIKEDDHR----TFFYQKWYDPELARFEDVKTVPRPKGAPKHRFCASCVRTEETQKR 867

Query: 920  ETFKVHSKT------SFVYGTA------EYFVHDYVYISPHHFTWD-------------- 953
            E  +V  +T      S VY ++      +Y + D V++ P  F+++              
Sbjct: 868  EAPQVGEQTKNPDGDSKVYYSSSSFQGVDYRIGDSVFLMPDAFSFNIKAKSAPIKKYTKK 927

Query: 954  -----------KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR 1002
                       +   +  K       +P+ + +++ I       R   +  +++V++F+R
Sbjct: 928  EVDEELYPEYYRKTTDYIKGNNRECPEPFRIGRIVGIFT-----RKGSEDIKLRVQKFYR 982

Query: 1003 PDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPA-----CNAPAIFQ 1055
            P++    A     SD+  +Y+S E   + +  + GK  V   +D+P      CN     Q
Sbjct: 983  PENTHKGASAGQQSDLNLLYWSNEEATVDLTGVQGKPTVVCGDDVPGSIHDYCNG---GQ 1039

Query: 1056 HIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGA 1115
            + F+    ++      +  P+  +   ++ +        + KGK    E+ ++VE+    
Sbjct: 1040 YRFYFLEAYNSETKQFEDPPSEAR---NTSTKGKGKGKGKGKGKGKSSEESVKVEEDEEL 1096

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
              +  L +LD+FAGCGGLSEG  Q+G+  + WAIE +EPA +AF+LN+P S +  ++CN+
Sbjct: 1097 FFQK-LKSLDVFAGCGGLSEGFHQAGLCESNWAIEIDEPAAQAFRLNNPGSTVFTDDCNL 1155

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
            +L  VME  G+  +                     LP  G+V+ + GGPPCQGFSGMNRF
Sbjct: 1156 LLSLVME--GEKTNGRG----------------QKLPQRGEVEVLCGGPPCQGFSGMNRF 1197

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
            N   +SK +  +I ++LS+ DY++P++FLLENVRNFVS+ K    +L L  L+ MGYQ  
Sbjct: 1198 NSREYSKFKNSLISSYLSYCDYYRPKFFLLENVRNFVSYKKNMVLKLALRCLVRMGYQCT 1257

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQYSAVRS 1354
            FG+L+AG +GV Q+R+RA I AA+P   LP +PEP HVFA    ++ +L D  + ++  S
Sbjct: 1258 FGVLQAGHYGVPQTRRRAIILAAAPGQKLPFYPEPNHVFAPRACQLSVLVDERKINSNIS 1317

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISK 1412
                AP+R +TVR  + DLP + NG  K  + Y  +P S FQ++IRGN    +L DHI K
Sbjct: 1318 WLESAPYRTITVRAAMSDLPEIHNGHQKLEISYDGEPQSAFQRKIRGNQYQPILRDHICK 1377

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV----------------------- 1449
            EM++L   R + IP  PG+DW DLP+ ++ L  G +                        
Sbjct: 1378 EMSQLVATRMRHIPLAPGSDWRDLPNIQITLPDGNICRKLRYTHKDKKNGYSSNGSLRGV 1437

Query: 1450 -----------------DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKV 1492
                              LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK 
Sbjct: 1438 CSCAEGEKCDTAYRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQ 1497

Query: 1493 GMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            G   HP+Q R+++VRECARSQGFPD+Y+F G+I  KHRQ+GNAVPP L+ A+GR++K+ V
Sbjct: 1498 GRVLHPEQHRVVSVRECARSQGFPDTYRFFGTILEKHRQVGNAVPPPLSAAIGREIKKCV 1557

Query: 1553 ESK 1555
             +K
Sbjct: 1558 VAK 1560



 Score = 44.3 bits (103), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 90/209 (43%), Gaps = 22/209 (10%)

Query: 114 RLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRIESW 170
           ++ +F ++D+N      +   I+   +LF SG + P+ +  +   E G+  +  G I  W
Sbjct: 367 KITNFCVYDKNTHLCAFDSGLIEKNKELFFSGYVKPIYDD-NSSIEGGIPTKAMGPINEW 425

Query: 171 SISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNS 229
             +G++ G   +I   T  A+Y  + P+ +Y  +++   EK    I + K L +    N 
Sbjct: 426 WTAGFDGGEKALIGFGTAFAEYILMAPSEAYTPFWKAMQEK----IYMSKILIEFIQNNP 481

Query: 230 DCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELP 289
           +   ++L+  +  ++    C       +D ++   +F+  Q+   DE + + +      P
Sbjct: 482 EAEYEDLINQIETTVPPENC---SSFTEDSLLRHAQFVVEQVESYDEGADEEETLLITTP 538

Query: 290 VLVALKEESSKRENFVQVNAASLGGNLAI 318
            +           + +++   +LG   A+
Sbjct: 539 CM----------RDLIKLAGVTLGKRRAV 557


>gi|383852983|ref|XP_003702004.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Megachile
            rotundata]
          Length = 1698

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 314/958 (32%), Positives = 485/958 (50%), Gaps = 144/958 (15%)

Query: 699  VEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITW-EGECVRKSGLALYKKA 757
            ++E  +++ ++ +E + + E ++I      +   +  KK++TW E +    +    YK  
Sbjct: 715  IQEADDSDLENDDEYEALMENKKIEELEHTKKDFKEFKKDVTWVEDKIAADNQKTFYKSV 774

Query: 758  IVHGEVVSLGSAVLVEVDELDQLPV-IYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTA 816
            +V  E + +   VLVE      +P+ +  + YM+E   G K FH     RG+ T+LG T+
Sbjct: 775  MVGDERIEINDCVLVEPRN-PAIPLHVAKIIYMWETKNGLKQFHANWFHRGTDTILGETS 833

Query: 817  NEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKDIANADKVDRARAEERKKKG 874
            +  E+FL++ C D+  + +K    V  +  P  W      +++  D++     +      
Sbjct: 834  DPIELFLSDDCDDVPFKSVKSKCTVHFKKAPENWDEIGNTNLSLEDEIKDVDGKT----- 888

Query: 875  LPTEYYCKSLYWPERGAFFILPVDSMGLGVGS----CHACGTKESEKEKETFKVH----- 925
                ++ +  Y PE   F     D   L        C AC    + ++    KV+     
Sbjct: 889  ----FFYQKRYTPETARFEDPSPDPECLRKEYIHRFCPACTRLRALQQFNMPKVYELIEE 944

Query: 926  -SKTSFVYGTAEYFVHDY-----VYISP--HHFTWDKAEGETFKA--------------- 962
             S    +YG  +Y   +Y     V++ P  + F +  A  +T KA               
Sbjct: 945  KSSKEVIYGVVKYKGEEYRVGTAVFLQPEAYKFKYKIAYQDTSKAKKKNVDEDMYPEFYR 1004

Query: 963  -------GRNVGL-KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC- 1013
                   G N+   KP+ +  +  I               +KV + +RP++   + +   
Sbjct: 1005 KSSDHVKGSNLDTPKPFCLGYINAIYANTNDMIVSPMDINIKVNKLYRPENTHRDISLME 1064

Query: 1014 -SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAIFQHIFFCEHLHDPSKGS 1070
             +D+  VY+S+E   I    + GKC +    ++        A   + F+    ++  + S
Sbjct: 1065 QADLNMVYWSDEVCTIKFTEVVGKCYLTYSENLNESIEEWTASGPNRFYFNEAYNVQEKS 1124

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL-----EVEKQGGASQ-------E 1118
              + P H             A S  K GK             E +K+  A+Q        
Sbjct: 1125 FDEPPYH-------------AISIGKSGKSKGNLKLKGKKTEENKKKIFANQPIEYKPIS 1171

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
              L TLD+FAGCGGLSEGL Q+ I+   WAIE EEPA  A++LN+P + +   +CN++L+
Sbjct: 1172 RKLKTLDVFAGCGGLSEGLHQADIAENLWAIEKEEPAAYAYRLNYPNATVFTEDCNILLQ 1231

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
             VM   GDA     T+E  +            LP  GQV+ + GGPPCQGFSGMNRFN  
Sbjct: 1232 KVMN--GDA-----TNEIGQ-----------KLPQKGQVELLCGGPPCQGFSGMNRFNSR 1273

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
             +S  +  +++++LS+ DY++P++F++ENVRNFVSF K    +LTL  L+ MGYQ  FGI
Sbjct: 1274 QYSLFKNSLVVSYLSYCDYYRPKFFIMENVRNFVSFKKSMVLKLTLRCLVRMGYQCTFGI 1333

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQYSAVRSTAN 1357
            L+AG +GV Q+R+R  I AA+P  TLP++PEP HVF+    ++ +L DN +YS+  S  +
Sbjct: 1334 LQAGNYGVPQTRRRMVILAAAPGQTLPKYPEPTHVFSKRACQLSVLVDNKKYSSNCSWID 1393

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMN 1415
             AP+R +TV+D + DLP + NG +K  M Y ++P+S FQ+++RG     VL DHI KEM 
Sbjct: 1394 SAPYRTITVKDAMFDLPEIKNGWNKEEMPYNSEPLSHFQRKMRGKQYQPVLRDHICKEMA 1453

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------------------- 1446
             L   R   IP   G+DW DLP+  ++LS G                             
Sbjct: 1454 PLVEGRMAHIPIASGSDWRDLPNITIRLSDGTYSKKLEYPYDDKKAGKSSTGAYRGVCSC 1513

Query: 1447 -----------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMC 1495
                       Q   LIPWCLP+T  RHN W GL+GRL+W+G F T+IT+P+PMGK G  
Sbjct: 1514 CNGKPCDPTDRQFNTLIPWCLPHTGNRHNHWSGLYGRLEWDGFFSTTITNPEPMGKQGRV 1573

Query: 1496 FHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
             HP + R+++VRECARSQGFPDS++F+GSI  KHRQ+GNAVPP L+ A+G ++++ ++
Sbjct: 1574 LHPVETRVVSVRECARSQGFPDSFRFYGSILDKHRQVGNAVPPPLSAAIGYEIRKCIK 1631



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 18/193 (9%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFG 165
           + P  +L  F ++D+NG   P +   I+    L+ SG +  + E  D   E GV  +  G
Sbjct: 425 EHPQNKLTYFSVYDKNGHLCPFDTGLIEKNVLLYFSGYMKAIYEE-DSSPEGGVPTKDMG 483

Query: 166 RIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEK---ARACIEVYKKL 221
            I  W +SG++ G   +I  +T   +Y  ++P+ +Y  + ++  EK   ++  IE    L
Sbjct: 484 PINEWYVSGFDGGELALIGFNTAFGEYILMEPSEAYAPFMDVVKEKIYMSKLVIEFL--L 541

Query: 222 SKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKN 281
            + S    D  +   L  +V     +K        +D ++   +FI +Q++  D ++  N
Sbjct: 542 DEISPSYED--LLNRLQTIVPPKGLTK------FTEDSLLRHAQFICDQVLSFDNSASSN 593

Query: 282 DQKFAELPVLVAL 294
           +      P + AL
Sbjct: 594 ETLLITTPCMRAL 606


>gi|383862947|ref|XP_003706944.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Megachile
            rotundata]
          Length = 1440

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 312/920 (33%), Positives = 465/920 (50%), Gaps = 127/920 (13%)

Query: 733  RSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFE 791
            +  +KEITW GE V   G    Y   +V  E +     VL+E ++      +  V YM+E
Sbjct: 543  KHVEKEITWIGEPVIDDGRRTFYNSVMVTDEEIKANDYVLIESNDPTVPLQVAKVMYMWE 602

Query: 792  ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WG 849
               G KL H    +RGS TVLG T++  E+FL ++C ++    IK    V  ++ P  W 
Sbjct: 603  DKSGAKLCHANWFRRGSDTVLGETSDPLELFLLDECDNVPFTSIKSKATVLYKASPNNWS 662

Query: 850  HQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMG----LGVG 905
                 DI   D++        + K   T +Y K  Y PE   F     D +     +   
Sbjct: 663  ELGNTDIPLEDEI--------QNKDGKTFFYQKK-YTPETARFEDPSPDPICPRKEISHR 713

Query: 906  SCHAC-----------------GTKESEKEKETFKVHSK-TSFVYGTAEYFVH---DYVY 944
             C AC                 G ++S KE     V  K   F  GTA + +     Y Y
Sbjct: 714  FCPACVRFTALQCYYTPKVFDRGEEKSNKEVIYNTVKYKGEDFTVGTAVFLMPGAIKYKY 773

Query: 945  ISPHHFTWDKAEGET---------------FKAGRNVGLKPYVVCQLLEIIVPKEPKRAE 989
             S +H +    +G+                 K       +P+ +  +  I      +   
Sbjct: 774  TSINHISTKPKKGKVDEDMYPEYYRKSSDHVKGSNYDTPEPFHIGYINAIYATTNSQLVA 833

Query: 990  VKSTQVKVRRFFRPDDISAEKAYCS--DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPA 1047
                 +K+ + +RP++           D+  VY+S+E   +    +AGKC +    ++  
Sbjct: 834  SSEIWIKINKMYRPENTHKGLTLMQQVDLNMVYWSDEVCDVRFSDVAGKCYLMYLENLD- 892

Query: 1048 CNAP----AIFQHIFFCEHLHDPSKGSLKQLPAH---IKLRYSSGSLDSEAASRRKKGKC 1100
              +P    A   + F+    ++ S+ +    P H   I                + K K 
Sbjct: 893  -QSPEEWTAAGPNRFYFSQAYNASEKTFVDPPNHAMSIGKSGKGKGKGKGKGKAKYKNKQ 951

Query: 1101 IEGEDELEVEKQ-GGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159
            ++ +++  + K     +    L TLD+FAGCGGLSEGL+Q+GI   +WAIE +EPA  A+
Sbjct: 952  LDNDNKKIINKPVDYCTVPKKLKTLDVFAGCGGLSEGLRQAGIIDNQWAIEKDEPAACAY 1011

Query: 1160 KLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDF 1219
            +LN+P + +   +CNV+LR VM                     L +N    LP  G+V+ 
Sbjct: 1012 RLNNPNTTVFCEDCNVLLRKVMN------------------GELRDNNGQRLPQKGEVEL 1053

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            + GGPPCQGFSGMNRFN   +S  +  ++++ LS+ DY++P++F++ENVRNFVSF K   
Sbjct: 1054 LCGGPPCQGFSGMNRFNSRQYSLFKNSLVVSCLSYCDYYRPKFFIMENVRNFVSFKKSMV 1113

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--AP 1337
             +LTL  L+ MGYQ  FGIL+AG +G+ Q+R+R  I AA+P + LP++PEP HVF+  A 
Sbjct: 1114 LKLTLRCLVRMGYQCTFGILQAGNYGIPQTRRRLIILAAAPGEVLPKYPEPTHVFSKRAC 1173

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK 1397
            +L +++ DN +YS+       AP+R ++VRD + DLP + NG +K  + Y ++P+S FQ+
Sbjct: 1174 QLSVIV-DNKKYSSNCDWTESAPYRTISVRDAMSDLPNIRNGWNKEEIAYGDEPISHFQR 1232

Query: 1398 RIRGNM--AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------- 1446
            +IR     A+L DHI K+M  L   R   IP   G+DW DLP+  V+LS G         
Sbjct: 1233 KIRPKEPDAILRDHICKDMAPLVEARIAHIPTASGSDWRDLPNIAVRLSDGTYSKKLEYT 1292

Query: 1447 -------------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
                                           Q   LIPWCLP+T KRHNQW GL+GRL+W
Sbjct: 1293 HNDKKSGKSSTGALRGVCNCSAGKICDPMDRQYNTLIPWCLPHTGKRHNQWAGLYGRLEW 1352

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +G F T+IT+P+PMGK G   HP+Q R+++VRECARSQGFPDS++F+G+I  KHRQIGNA
Sbjct: 1353 DGFFGTTITNPEPMGKQGRVLHPEQTRVVSVRECARSQGFPDSFRFYGNILDKHRQIGNA 1412

Query: 1536 VPPTLAFALGRKLKEAVESK 1555
            VPP L  ALG ++++ + ++
Sbjct: 1413 VPPPLGAALGLEIRQCLRTE 1432



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 13/197 (6%)

Query: 103 TARQDGD-RPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKG 158
           T   +GD RP  ++  F ++D+NG   P +   I+    L+ SG + P+ E  +   E G
Sbjct: 213 TMFYEGDERPQNKITHFCVYDKNGHLCPFDTGLIEKNVILYFSGYMKPIYEE-NSSPEGG 271

Query: 159 VRCEGFGRIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEV 217
           +  +  G I  W +SG++ G   +I  +T  A+Y  ++PA +Y  + +   EK    I +
Sbjct: 272 MPTKDIGPINEWWVSGFDGGELALIGFNTPFAEYILMEPAEAYAPFMDSVKEK----IYM 327

Query: 218 YKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDET 277
            K + +      + + ++LL  +   +      R     +D ++   +FI +Q+I  D +
Sbjct: 328 SKIVIEFLLDEINPTYEDLLHRLQTIVPPKGLSR---FTEDSLLRYAQFICDQVISFDAS 384

Query: 278 SKKNDQKFAELPVLVAL 294
           ++  D      P + AL
Sbjct: 385 ARPEDPLLITSPCMRAL 401


>gi|198416008|ref|XP_002122948.1| PREDICTED: Zn-finger (CXXC)-5 [Ciona intestinalis]
          Length = 1305

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 372/1281 (29%), Positives = 600/1281 (46%), Gaps = 242/1281 (18%)

Query: 420  PRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTS 479
            P+  + D+++Y+  + L   +   ++  +++++   G  K I DE  G           +
Sbjct: 119  PQHKITDFTVYDKSTHLCPFDAGLIE--KNVELYFSGLVKPIYDEDPGV---------GT 167

Query: 480  GVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVL 537
            G+ G +        L  I EW      G     +   +  A Y L +PS  YAP +  + 
Sbjct: 168  GIPGKR--------LGPINEWFTAGFDGGEKALVGFSSAFADYFLMEPSHAYAPLWASIQ 219

Query: 538  KTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERY----VVVH 593
            +   ++  +I  L +   V    + D++ R+        + +      V ++    ++ H
Sbjct: 220  EKIHMSKIVIEFLSD---VPDADYEDLVNRI-------QTSVPPPTLGVAKFTEDSLLRH 269

Query: 594  GQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPV 653
             Q V++    Y + +  +   ++G     +  H     + K++V +    +  +A     
Sbjct: 270  AQFVVEQVESYDNARSDEEDSLLGTTCVRDLIHLAGVTLGKRRVARRSAVVKEKAM---- 325

Query: 654  VVSKRKVMQATTTRLINRIWGEYYSN---------------------YSPEDGKEETAC- 691
               K    +ATTTRL+  +  +++                         PE GK  T+C 
Sbjct: 326  ---KASSTKATTTRLVAEVMEKFFGGTVDVTTGNKIRRRRCGVCEACLKPECGKC-TSCK 381

Query: 692  ------------EANEDEEVEEQG----ENEEDDTEEEKLISEERQISCSVAVQIKSRST 735
                        +   D      G    E+ + D ++EK+     ++    A ++ +   
Sbjct: 382  DMVKFGGGGKLKQTCIDRRCPNLGLDLMEDSDPDDKDEKVKPSPSKMKVIKAGKVTT--- 438

Query: 736  KKEITWEGECVRKSGLALYKKAI-VHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATG 794
                +W GE + + G  +Y   + V G+V+  G  V V+  +   LP I  V YM+  +G
Sbjct: 439  ----SWVGEALYEEGGKVYYPGVRVGGDVIEGGECVSVKNKDEGGLPYIGRVVYMWGESG 494

Query: 795  GCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRK 854
            G K+ H     R + T+L  T+   E+ + ++C DL ++ I   V V  R VP  HQ+  
Sbjct: 495  G-KMVHVDWFMRAADTILQETSQPDELLIIDECDDLSVECIAGKVDVSHR-VP--HQNWS 550

Query: 855  DIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHAC---- 910
             +   ++      +     G+ + YY K +Y PE   F   P +        C +C    
Sbjct: 551  FMGGVEE------QHPTTDGVSSFYYQK-MYVPEFARFVDPPSNEPTDDPDFCPSCVRIN 603

Query: 911  -------GTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTW----------- 952
                      ++E ++E  K+  +     G  EY V D VY+S   +++           
Sbjct: 604  EGKMRQVAVGKNELKRENGKIFYEFVCKDGV-EYGVGDSVYLSVETYSFKSKNKHKKQVL 662

Query: 953  -------DKAEGETF--KAGRNVG-----LKPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
                   D+ E   F  K G   G      +P+ + ++ EI   K+       S  + V 
Sbjct: 663  PKSLDEIDEDEYPEFYRKGGYVKGSNLEVAEPFRIGRINEIFGGKK------XSISLVVT 716

Query: 999  RFFRPDDISA---EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQ 1055
            +F+RP++ +      +YC D+  +Y+S +   +    + GKCEV  + D+    A    +
Sbjct: 717  KFYRPENTNKPLKSNSYC-DLNLLYWSNDKVEVDFSFVEGKCEVECELDLSVTVAEYSRK 775

Query: 1056 --HIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRR----------KKGKCIEG 1103
              + F+   +++   G+   +P     R     L  +A   +          KK + I G
Sbjct: 776  AANRFYFSEVYNEEDGTF-TVPPSTARRSGVELLKQKAKGVKPKLTKMNKMMKKDETIVG 834

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            EDE ++ K         L +LD+F+GCGGLSEG  Q+GI+   +AIE  EPA +A++LN+
Sbjct: 835  EDETKIPK---------LRSLDVFSGCGGLSEGFHQAGIAEPSYAIELWEPAAQAYRLNN 885

Query: 1164 PESLMLINNCNVILRAVME-----KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVD 1218
            P + +   +CNV+L  VM      KCG                         LP  G V+
Sbjct: 886  PGATVFTEDCNVLLEMVMNGEERSKCG-----------------------QRLPQKGDVE 922

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             + GGPPCQGFSGMNRFN   +S+ +  +++++LS+ DY++PR+FLLENVRNFVSF    
Sbjct: 923  LLCGGPPCQGFSGMNRFNSREYSRFKNSLVVSYLSYCDYYRPRFFLLENVRNFVSFKNCM 982

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--A 1336
              +L+LA+LL MGYQ  FG+L+AG +GVSQ+R+RA I AA+P + LP +PEP+H F+   
Sbjct: 983  VLKLSLAALLRMGYQCTFGVLQAGHYGVSQTRRRAIILAAAPGEQLPLYPEPLHTFSTRG 1042

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
              L   + D  +Y+     +  AP+R +TV D + DLP + NG +K  M Y  +P++ FQ
Sbjct: 1043 GSLSAQVGDT-RYTNNIKWSTSAPYRTITVHDAMSDLPKIPNGHAKLEMPYTGEPLTHFQ 1101

Query: 1397 KRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG-------- 1446
            + +RG     V+ DHI K+M+ L   R   IP  PG+DW DLP++  KLS G        
Sbjct: 1102 RMMRGKDYQGVVRDHICKDMSPLVAARMALIPLIPGSDWRDLPNKPHKLSDGTTAKVLRY 1161

Query: 1447 --------------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
                                            Q   LIPWCLP+T  RHN W GL+GRL 
Sbjct: 1162 EYHDKKQGRSSTGGMRGVCSCAEGRACDAMDRQFNTLIPWCLPHTGNRHNNWAGLYGRLC 1221

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+G F T++T+P+PMGK G   HP Q R+++VRECARSQGFPDSY+F GSI  KHR++GN
Sbjct: 1222 WDGFFSTTVTNPEPMGKQGRVLHPQQHRVVSVRECARSQGFPDSYRFFGSILDKHREVGN 1281

Query: 1535 AVPPTLAFALGRKLKEAVESK 1555
            AVPP ++ A+G ++K+++E K
Sbjct: 1282 AVPPPMSKAIGLQIKKSLEWK 1302


>gi|283549176|ref|NP_001164521.1| DNA methyltransferase 1a [Nasonia vitripennis]
          Length = 1349

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 344/1226 (28%), Positives = 577/1226 (47%), Gaps = 211/1226 (17%)

Query: 488  GGFPIY-LSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAI 544
            GG P   +  I EW +    G     +S  T++  Y L  PS++YA +   V + + ++ 
Sbjct: 172  GGIPGKDMGPIVEWWVSGFDGGEQAIVSFSTEIGDYVLMDPSEEYAAFMISVREKSFMSK 231

Query: 545  SIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEY 604
            ++I  L ++      S+ D++ +L  +     +     P   E  ++ H Q +      +
Sbjct: 232  TVIEFLLDE---ESPSYEDLLNKLQTV-----AMPKGLPKFTEDILLHHAQFICDQIVSF 283

Query: 605  PDEQIKKCAFIIG--LMKKMEE-------RHHTKWLVKKKKVQKSEINLNPRASMGPVVV 655
             +        +I    M+ + +       +  T    KK+  ++ E +   R  M     
Sbjct: 284  DESATTDDPLLITTPCMRALIDLAGITFNKGKTVRKGKKRNSRRQEDDWR-RGLMRKAQK 342

Query: 656  SKRKV-MQATTTRLINRIWGEYYSNYSPED------------------------------ 684
             K+    +AT T+L+N ++  ++ +    +                              
Sbjct: 343  EKKPSWTKATATQLVNNVFDSFFPDQLANNNTDTVALKRRRCGVCEPCQQPDCGACSACK 402

Query: 685  --------GKEETACEANEDEEVEEQGENEEDDTEEE--------KLISEERQISCSVAV 728
                    G+ + AC       +E Q  N+ED  ++E         +++  +++      
Sbjct: 403  SMIKFGGPGRSKQACVKRRCPNMEIQEANDEDPDDQEGPEPDAEPSIVAYRKKLG----- 457

Query: 729  QIKSRSTKKEITWEGECV-RKSGLALYKKAIVHGEVVSLGSAVLVE-VDELDQLPVIYFV 786
             +KSR+ K  I W G+ +   S  + Y    +  E + +   V +E VD    L ++  +
Sbjct: 458  NLKSRTGK--IEWVGKPIGTDSKGSFYSAVELDSETIEINDFVFIESVDPTVPLQIVKVI 515

Query: 787  EYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSV 846
             YM+E   G K+FH   + RGS TVLG T+N  E+FL + C+D+ +  +K    V  R  
Sbjct: 516  -YMWENKMGIKMFHATWLWRGSETVLGETSNSSELFLVDDCQDVPVSYVKSKTTVLHRDT 574

Query: 847  P--WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLG- 903
            P  W       + N+  +D ++ +        T +Y +  Y P   A F  P+  +    
Sbjct: 575  PDNWNELGNTSVNNS--MDESKEDI-------TSFYYQKRYDPN-NARFEDPLPDLECRP 624

Query: 904  ------VGSCHACGTKESEKEKETF-KVHSKTS--FVYGTA-----EYFVHDYVYISPHH 949
                    +C  C   + +   + F K+  K+S   +YG       E+ V   V++ P  
Sbjct: 625  EIKYRFCSACTRCTCLQQQNRPQVFDKLEEKSSKEVLYGMVKFKDEEFRVGSAVFLQPGT 684

Query: 950  FTW-----------------------------DKAEGETFKAGRNVGLKPYVVCQLLEII 980
            F +                             D+ +G  F        +P+ +  +  I 
Sbjct: 685  FKFKYPLPYQKANRTKREVDEDRFPEYYRKFNDRVKGSNFDTP-----EPFEIGYITSIY 739

Query: 981  VPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC--SDIREVYYSEETHLIFVEAIAGKCE 1038
                 K     S  +KV++ +RP++    ++    SD+  +Y+SEE   +    + GKC 
Sbjct: 740  ATTNVKLLASTSLHIKVKKLYRPENTFKSESMKGRSDLNMLYWSEEEVTLPFTCVVGKCY 799

Query: 1039 VRKKN--DIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRK 1096
            +      DI          + F+   ++   +    + P+      S G L  ++   + 
Sbjct: 800  LTYSENLDISVEEWTVAGPNRFYFTQMYSHKEEEFDEPPSKA---CSIGKLIKKSDKIKS 856

Query: 1097 KGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAG 1156
            K K  +    +++       ++  L TLD+FAGCGGLSEGL Q+G++ + WAIE +E A 
Sbjct: 857  KSKKADAPKLIDIPPDFPQIKKK-LRTLDVFAGCGGLSEGLHQAGVAESSWAIEVDEAAA 915

Query: 1157 EAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ 1216
             A++LN+P + +   +CN  L+ VM+                +A          LP  G+
Sbjct: 916  HAYRLNNPNAAVFTGDCNAYLKKVMD-------------GETMAGG------QRLPQRGE 956

Query: 1217 VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276
            VD + GGPPCQGFSGMNRFN   +S  +  +++++LS+ DY++PR+F++ENVRNFV+F K
Sbjct: 957  VDLLCGGPPCQGFSGMNRFNSRAYSLFKNSLVVSYLSYCDYYRPRFFIMENVRNFVTFKK 1016

Query: 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF-- 1334
                +LTL  L+ MGYQ  FGIL+AG +GV Q+R+R  I AA+P + LP++P P+HVF  
Sbjct: 1017 SMVLKLTLRCLIRMGYQCTFGILQAGNYGVPQTRRRMIILAAAPGEVLPKYPNPLHVFSK 1076

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
            +A  L +++ DN +Y         AP++  T+RD + DLP++ +G ++ +M Y ++P+S 
Sbjct: 1077 SACNLSVVI-DNKKYFPTYDWVESAPYKVTTIRDALSDLPSIKSGKNEDVMSYGSEPLSH 1135

Query: 1395 FQKRIRGNM--AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD-- 1450
            FQ+++R  +  ++L DHI K++  L   R   IP   G+DW DLP+  + LS G   +  
Sbjct: 1136 FQRKLRAGVSDSLLLDHICKDLGPLVEARMAHIPTVSGSDWRDLPNIVIPLSDGNHTNKL 1195

Query: 1451 --------------------------------------LIPWCLPNTAKRHNQWKGLFGR 1472
                                                  LIPWCLP+T  RHN W GL+GR
Sbjct: 1196 KYNYHDKKAGKSSTGALRGVCSCCTGKECNPLDRQDNTLIPWCLPHTGNRHNHWAGLYGR 1255

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            ++W+G F T+IT+P+PMGK G   HPDQ R+++VRECARSQGFPD+++F+G+IQ KHRQ+
Sbjct: 1256 IEWDGFFSTTITNPEPMGKQGRVLHPDQTRVVSVRECARSQGFPDNFRFYGNIQDKHRQV 1315

Query: 1533 GNAVPPTLAFALGRKLKEAVESKRST 1558
            GNAVPP LA A+G +++++V    S+
Sbjct: 1316 GNAVPPPLAAAIGMEIRKSVSIAESS 1341



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 133/313 (42%), Gaps = 34/313 (10%)

Query: 2   GSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKR 61
            + A+  +  +N Q  +D  + K  K + + +    +D    ++ K  K  +  ++  K+
Sbjct: 5   ANGAVGGAINTNGQAHSDDDDPKKPKEEIQDDENYVEDQQPNKRVKTGKREKQGKKETKK 64

Query: 62  PKRMA------ACTDFKEKSVR---------ISEKSYLVEAKKDQYADDEIVAVGLTARQ 106
           P R A            ++ +R         + E S L++ K   +  DE+         
Sbjct: 65  PVRPAEPICEICLQKLNDEDLRLYIGHPNNAVDEYSVLLDPKLCLFNGDELDIT------ 118

Query: 107 DGD-RPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCE 162
           +GD R   ++  F ++D+NG   P +   I+   +++ SG + P+ +  D   E G+  +
Sbjct: 119 EGDARALNKVTCFSVYDKNGHLCPFDGGLIEKNINIYFSGYVKPIYDD-DPSIEGGIPGK 177

Query: 163 GFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKL 221
             G I  W +SG++ G   ++  ST+I DY  + P+  Y  +     EK+     V + L
Sbjct: 178 DMGPIVEWWVSGFDGGEQAIVSFSTEIGDYVLMDPSEEYAAFMISVREKSFMSKTVIEFL 237

Query: 222 SKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKN 281
                 + +  +++L    V    G   F      +D ++   +FI +Q++  DE++  +
Sbjct: 238 LDEESPSYEDLLNKL--QTVAMPKGLPKF-----TEDILLHHAQFICDQIVSFDESATTD 290

Query: 282 DQKFAELPVLVAL 294
           D      P + AL
Sbjct: 291 DPLLITTPCMRAL 303


>gi|110765384|ref|XP_001122269.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI [Apis mellifera]
          Length = 1427

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 306/912 (33%), Positives = 467/912 (51%), Gaps = 117/912 (12%)

Query: 733  RSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFE 791
            +  +KEITW GE +   G    YK  +V  E +     VL+E ++      I  V YM+E
Sbjct: 530  KHVEKEITWVGESIINDGRRTFYKSVMVVDEEIKANDYVLIESNDPTVPLQIAKVIYMWE 589

Query: 792  ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQ 851
               G KL H    +RGS TVLG T++  E+FL ++C ++    +K    V  ++ P   +
Sbjct: 590  DKNGAKLCHANWFRRGSDTVLGETSDSLELFLLDECDNVPFTSVKSKATVIYKTNP---K 646

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDS----MGLGVGSC 907
            +  ++ NAD +     + +  K   T +Y K  Y PE   F    +D       +    C
Sbjct: 647  NWNELGNADILPEDEIQNKDGK---TFFYQKK-YIPETARFEDCSLDPECPRKEISHRFC 702

Query: 908  HAC------------GTKESEKEKETFKV------HSKTSFVYGTAEYFVH---DYVYIS 946
             AC               + E+EK + +V      +    F  G+A + +     Y Y S
Sbjct: 703  PACIRFTTLQCYYTPKVFDREEEKNSKEVTYNIVKYKNEEFKVGSAVFLMPGAIKYKYTS 762

Query: 947  PHHFTWDKAEGET---------------FKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVK 991
             +H +    +G+                 K       +P+ +  +  I      K     
Sbjct: 763  TYHISQKVKKGKVDEDMYPEYYRKSSDHVKGSNYDTPEPFHIGYINSIYATTNNKLVASS 822

Query: 992  STQVKVRRFFRPDDISAEKAYCS--DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC- 1048
               +K+ + +RP++           D+  VY+S+E   I    +AGKC +    ++    
Sbjct: 823  DIWIKINKMYRPENTHKGLTLMQQVDLNMVYWSDEVCDIKFSDVAGKCYLVYSENLDQSV 882

Query: 1049 -NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
                    + F+    ++ S+ +    P +  +              + K K +E  D+ 
Sbjct: 883  EEWTTAGPYRFYFSQAYNASEKTFVD-PPYYAMNIGKLGSGKGKGKAKCKSKKLETSDKK 941

Query: 1108 EVEKQGGASQ-ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166
             ++K     +    L TLD+FAGCGGLSEGL+Q+GI   +WAIE +EPA  A++LN+P +
Sbjct: 942  IIDKPINYCKVPKKLKTLDVFAGCGGLSEGLRQAGIVDNQWAIEKDEPAACAYRLNNPNT 1001

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPC 1226
             +   +CNV+LR VM   GD                L +N    LP  G+V+ + GGPPC
Sbjct: 1002 TVFCEDCNVLLRKVMN--GD----------------LCDNNGQRLPQKGEVELLCGGPPC 1043

Query: 1227 QGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            QGFSGMNRFN   +S  +  ++++ LS+ DY++P++F++ENVRNFVSF +    +LTL  
Sbjct: 1044 QGFSGMNRFNSRQYSLFKNSLVVSCLSYCDYYRPKFFIMENVRNFVSFKRSMVLKLTLRC 1103

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLS 1344
            L+ MGYQ  FGIL+AG +G+ Q+R+R  I AA+P + LP++PEP HVF+  A +L +++ 
Sbjct: 1104 LVRMGYQCTFGILQAGNYGIPQTRRRLIILAAAPGEVLPKYPEPTHVFSKRACQLSVIV- 1162

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM- 1403
            DN +YS+       AP+R ++VRD + DLP + NG +   + Y ++P+S FQ+++R    
Sbjct: 1163 DNKKYSSNCDWTESAPYRTISVRDAMSDLPNIRNGWNNEEIAYSDEPISHFQRKVRPKEP 1222

Query: 1404 -AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------- 1446
             A+L DHI K+M  L   R   IP   G+DW DLP+  V+LS G                
Sbjct: 1223 DAILRDHICKDMAPLVEARIAHIPTASGSDWRDLPNITVRLSDGTYSKKLEYMYHDKKAG 1282

Query: 1447 ------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                                    Q   LIPWCLP+T KRHN W GL+GRL+W+G F T+
Sbjct: 1283 KSSTGALRGVCSCCMGKMCDPIARQYNTLIPWCLPHTGKRHNHWAGLYGRLEWDGFFGTT 1342

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            IT+P+PMGK G   HP+Q R+++VRECARSQGFPDS++F+G+I  KHRQIGNAVPP L  
Sbjct: 1343 ITNPEPMGKQGRVLHPEQTRVVSVRECARSQGFPDSFRFYGNILDKHRQIGNAVPPPLGA 1402

Query: 1543 ALGRKLKEAVES 1554
            ALG ++++ +++
Sbjct: 1403 ALGFEIRKCLKN 1414



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 21/223 (9%)

Query: 78  ISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDD 137
           + E   L + +   +  +EIV       +  +RP  ++  F ++D+NG     +   I+ 
Sbjct: 181 VEEMIALTDPRLSLFTGEEIVI-----HESDERPQNKITHFCVYDKNGHLCSFDTGLIEK 235

Query: 138 ---LFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGS-PVIWLSTDIADYDC 193
              L+ SG + P+ E +    E GV  +  G I  W +SG++ G   ++  +T  A+Y  
Sbjct: 236 NIVLYFSGYMKPIYEENSC-PEGGVPTKDMGPINEWWVSGFDGGELALVGFTTAFAEYIL 294

Query: 194 LKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGG 253
           ++PA  Y  + +   EK    I + K + +      + + ++LL   ++++   K    G
Sbjct: 295 MEPAEVYSPFMDSVKEK----IYMSKIVIEFLLDEINPTYEDLL-NKLQTIVPPK----G 345

Query: 254 VS--IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
           +S   +D ++   +FI +Q+I  D ++   D      P + AL
Sbjct: 346 LSRFTEDSLLRYAQFICDQVISFDASAGPEDPLLITSPCMRAL 388


>gi|209978474|gb|ACJ04671.1| DNA methyltransferase 1 [Carassius auratus]
          Length = 1503

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 319/918 (34%), Positives = 472/918 (51%), Gaps = 147/918 (16%)

Query: 739  ITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE ++  G    Y K  V  EVV +G  V   V   D    +Y          G K
Sbjct: 614  ISWVGEPIKTDGRKEYYMKVRVENEVVEVGDCV--SVSPADPSHPLYLARITALWEDGEK 671

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            +FH     RG+ TVLG +++  E+FL ++C D++L  +   V V  ++          I 
Sbjct: 672  MFHAHWFCRGTDTVLGESSDPLELFLVDECEDMQLSFVHGKVNVLYKAPSENWFMEGGID 731

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP--VDSMGLGVGSCHAC-GTKE 914
            +  KV     E          ++ + LY  E   F   P  + S       C +C   KE
Sbjct: 732  DDMKVIEDDGES---------FFYQLLYDGECARFESPPKVIPSEDHKYKFCASCVRNKE 782

Query: 915  SEKEK-----ETFKVHSKTSFV-YGTA-----EYFVHDYVYISPHHFTWDKAEGETFK-- 961
             E +      E  +V    S V YG A     +Y V D VY+ P  F +        K  
Sbjct: 783  REAQDLPNVCEPLEVEKSDSKVFYGLATLKGEQYRVGDSVYLPPEAFNFAVKVASPLKRS 842

Query: 962  ----------------------AGRNV-GLKPYVVCQLLEIIVPK----EPKRAEVKSTQ 994
                                   G N+   +P+ + ++ EI   K    +P R + K   
Sbjct: 843  HRKEDVDEDLHPEYYRKSSDYIKGSNLDAPEPFRIGRIKEIFCNKRSDGKPDRMDPK--- 899

Query: 995  VKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP------ 1046
            +++ +F+RP++     + AY SD+ ++Y+S+E   + +  + G+C+V    D+       
Sbjct: 900  LRLYKFYRPENTHKGPKGAYHSDVNQLYWSDEEATVNMAEVLGRCQVEYAEDLVESVQDY 959

Query: 1047 ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDE 1106
            +   P  F   +F E  +  +K S +  P+H +   + G    +   + K     +    
Sbjct: 960  SSRGPDRF---YFLEAYNAKTK-SFEDPPSHARSAVNKGKGKGKGKGKGKGKAASQ---- 1011

Query: 1107 LEVEKQGGASQEN---HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
               E Q    QE     L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+
Sbjct: 1012 ---ESQDKEPQEPTVPKLRTLDVFSGCGGLSEGFHQAGISETHWAIEMWDPAAQAFRLNN 1068

Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
            P + +   +CNV+L+ VM              + E   SL +     LP  G V+ + GG
Sbjct: 1069 PGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLCGG 1110

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPCQGFSGMNRFN  T+S  +  + +++LS+ DY++P++FLLENVRNFVSF +    +LT
Sbjct: 1111 PPCQGFSGMNRFNSRTYSAFKNSLAVSYLSYCDYYRPKFFLLENVRNFVSFKRSMVLKLT 1170

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA----APEL 1339
            L  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA    +P +
Sbjct: 1171 LRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPRFPEPLHVFAPRACSPSV 1230

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
             +   D  +Y +  +  NG  +R +TVRDT+ DLP + NGA+   + Y  +P SWFQ+ I
Sbjct: 1231 VV---DEKRYVSNVTRGNGGIYRTITVRDTMSDLPEIRNGAAALEISYNGEPQSWFQRHI 1287

Query: 1400 RGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------- 1446
            RG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G           
Sbjct: 1288 RGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLRDGTNTKKLRYTHA 1347

Query: 1447 -----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                                         Q   LIPWCLP+T  RHN W GL+GRL+W+G
Sbjct: 1348 DKKNGRSGTGALRGVCSCAEGKPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDG 1407

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
             F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G++  KHRQ+GNAVP
Sbjct: 1408 FFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNVLDKHRQVGNAVP 1467

Query: 1538 PTLAFALGRKLKEAVESK 1555
            P L+ A+G ++K+ V+ K
Sbjct: 1468 PPLSKAIGLEIKKCVQGK 1485



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 22/278 (7%)

Query: 26  KKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLV 85
           K+ K ++E PET+ +T+GQ   +K +S     P K P       D   K  +      L 
Sbjct: 203 KRLKTETENPETEKTTNGQ---IKPVSAAKTPPPKCPDCRQYLDDSDLKFFQGDPDDALD 259

Query: 86  EAKKDQYADDEIVAVGLTARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---D 137
           E    +   DE +++   A +DG     D P  ++ +F ++D+ G   P +   I+   +
Sbjct: 260 EP---EMLTDERLSL-FDANEDGFESYDDLPQHKITNFSVYDKRGHLCPFDSGLIEKNVE 315

Query: 138 LFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKP 196
           L+ S  + P+ + +    + GV  +  G I +W I+G++ G   +I  +T  ADY  + P
Sbjct: 316 LYFSCAVKPIYDDNPC-MDGGVPAKKLGPINAWWITGFDGGEKALIGFTTAFADYILMDP 374

Query: 197 ASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSI 256
              Y   + L  EK      V + L K    N D + ++LL  +  ++  +         
Sbjct: 375 REEYSSIFALMQEKIYMSKIVVEFLQK----NQDATYEDLLNKIETTVPPAG-LNFNRFT 429

Query: 257 KDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
           +D ++   +F+  Q+   DE    ++Q     P +  L
Sbjct: 430 EDTLLRHAQFVVEQVESYDEAGDSDEQPIIITPCMRDL 467


>gi|350410581|ref|XP_003489082.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Bombus
            impatiens]
          Length = 1441

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 365/1277 (28%), Positives = 595/1277 (46%), Gaps = 211/1277 (16%)

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKM--ISDEGSGFCLDTDS 474
            D+ P+  L  + +Y+ +  L S +   ++     +V ++ SG M  I +E S        
Sbjct: 220  DERPQNKLTHFCVYDKNGHLCSFDTGLIEK----NVVLYFSGYMKPIYEENS-------- 267

Query: 475  SQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPW 532
              C  G    +D G        I EW +    G  +  +   T  A Y L +P++ YAP+
Sbjct: 268  --CPEGGVPTKDMG-------PINEWWVSGFDGGELALVGFTTAFAEYILMEPAEPYAPF 318

Query: 533  YEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVV 592
             + V +   ++  +I  L ++   +   + D++ +L  I           P  + R+   
Sbjct: 319  MDSVKEKIYMSKIVIEFLLDEINPT---YEDLLNKLQTI---------VPPKGLARFT-- 364

Query: 593  HGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGP 652
              +  L  +A++  +Q+           + E+         +  V  + + LN R ++  
Sbjct: 365  --EDSLLRYAQFICDQV----ISFDASARPEDPLLITSPCMRALVTLAGVTLNKRIALRR 418

Query: 653  VV---VSKRKVM--QATTTRLINRIWGEYYSNYSPEDGKEETA----------------- 690
                    +KV   +ATTT+L+N ++  ++S+    +  +E +                 
Sbjct: 419  TQSRDTKNKKVTWTKATTTKLVNNMFETFFSDQIATNNDKEVSGPKRHRCGVCETCQQPD 478

Query: 691  ---CEANEDE---------------------EVEEQGENEEDDTEEEKLISEERQISCSV 726
               C A +D                       ++E  +++++D +    + E  +I+  +
Sbjct: 479  CGICTACKDMIKFGGSGRSKQACNRRRCPNMAIQEADDSDQEDDDFNDTLVENVKITQKM 538

Query: 727  AVQIKSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYF 785
             ++ + +  +KEITW GE +   G    Y   IV  E +     VL+E ++      I  
Sbjct: 539  ILK-EFKHVEKEITWVGEPIIDDGRRTFYNSVIVVDEEIKGNDCVLIESNDPTVPLQIAK 597

Query: 786  VEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRS 845
            V YM+E   G KL H    +RGS TVLG T++  E+FL ++C ++    +K    V  ++
Sbjct: 598  VIYMWEDKNGAKLCHANWFRRGSDTVLGETSDPLELFLLDECDNVPFTSVKSKATVIYKT 657

Query: 846  VPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDS----MG 901
             P       ++   D++        + K   T +Y K  Y PE   F     D       
Sbjct: 658  CPKNWNELGNVLPEDEI--------QNKDGKTFFYQKK-YTPETARFEDCASDPECPRKE 708

Query: 902  LGVGSCHACG--------------TKESEKEK------------ETFKVHSKTSFVYGTA 935
            +    C AC                +E EK              E F+V S    +    
Sbjct: 709  ISHRFCPACVRFTTLQCYYTPKVFNREEEKSSKEVTYSMAKYKGEEFRVGSTVFLMPAAI 768

Query: 936  EYFVHDYVYISPH----------HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEP 985
            +Y      +ISP           +  + +   +  K       +P+ +  +  I      
Sbjct: 769  KYKFTSTYHISPKVKKGKVDEDMYPEYYRKSSDHVKGSNYDTPEPFHIGYINSIYATTNN 828

Query: 986  KRAEVKSTQVKVRRFFRPDDISAEKAYCS--DIREVYYSEETHLIFVEAIAGKCEVRKKN 1043
            K        +K+ + +RP++           D+  VY+SEE   +    +AGKC +    
Sbjct: 829  KLVASSDIWIKINKLYRPENTHKGLTLMQQVDLNTVYWSEEVCDVKFSDVAGKCYLAYSE 888

Query: 1044 DIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCI 1101
            ++        A   + F+    ++  + +    P +  +      +       + K K +
Sbjct: 889  NLDQSVEEWTAAGPNRFYFSQAYNALEKTFVD-PPYYAMNIGKSVIGKGKGKAKCKSKKV 947

Query: 1102 EGEDELEVEKQGGASQE-NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160
            E  ++  V+K  G  +    L TLD+FAGCGGLSEGL+Q+GI   +WAIE +EPA  A++
Sbjct: 948  ENSNKKIVDKPIGYCKVIRKLKTLDVFAGCGGLSEGLRQAGIVDNQWAIERDEPAACAYR 1007

Query: 1161 LNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFI 1220
            LN+P + +   +CNV+L  VM+  GD                L +N    LP  G+V+ +
Sbjct: 1008 LNNPNTTVFCEDCNVLLSKVMK--GD----------------LCDNNGQRLPQKGEVELL 1049

Query: 1221 NGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280
             GGPPCQGFSGMNRFN   +S  +  ++ + LS+ DY++P++F++ENVRNFVSF +    
Sbjct: 1050 CGGPPCQGFSGMNRFNSRQYSLFKNSLVASCLSYCDYYRPKFFIMENVRNFVSFKRSMVL 1109

Query: 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APE 1338
            +LTL  L+ MGYQ  FGIL+AG +G+ Q+R+R  I AA+P + LP++PEP HVF+  A +
Sbjct: 1110 KLTLRCLVRMGYQCTFGILQAGNYGIPQTRRRLIILAAAPGEVLPKYPEPTHVFSKRACQ 1169

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
            L +++ DN +YS+       AP+R ++VRD + DLP + NG +   M Y ++P+S FQ++
Sbjct: 1170 LSVIV-DNKKYSSNCDWIESAPYRTISVRDAMSDLPNIRNGWNTEEMAYSDEPISHFQRK 1228

Query: 1399 IRGNM--AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------- 1446
            +R     A+L DHI K+M  L   R   IP   G+DW DLP+  V+LS G          
Sbjct: 1229 VRPKEPDAILRDHICKDMAPLVEARIAHIPTASGSDWRDLPNIAVRLSDGTYSKKLEYLY 1288

Query: 1447 ------------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
                                          Q   LIPWCLP+T +RHN W GL+GRL+W+
Sbjct: 1289 HDKKAGKSSTGAHRGVCSCCAGKMCDPMARQYNTLIPWCLPHTGRRHNHWAGLYGRLEWD 1348

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
            G F T+IT+P+PMGK G   HP+Q R+++VRECARSQGFPD+++F+G+I  KHRQIGNAV
Sbjct: 1349 GFFGTTITNPEPMGKQGRVLHPEQTRVVSVRECARSQGFPDTFRFYGNILDKHRQIGNAV 1408

Query: 1537 PPTLAFALGRKLKEAVE 1553
            PP L  ALG ++++ +E
Sbjct: 1409 PPPLGAALGFEIRKCLE 1425



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFG 165
           +RP  +L  F ++D+NG     +   I+    L+ SG + P+ E +    E GV  +  G
Sbjct: 221 ERPQNKLTHFCVYDKNGHLCSFDTGLIEKNVVLYFSGYMKPIYEENSC-PEGGVPTKDMG 279

Query: 166 RIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G   ++  +T  A+Y  ++PA  Y  + +   EK    I + K + + 
Sbjct: 280 PINEWWVSGFDGGELALVGFTTAFAEYILMEPAEPYAPFMDSVKEK----IYMSKIVIEF 335

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
                + + ++LL  +   +      R     +D ++   +FI +Q+I  D +++  D  
Sbjct: 336 LLDEINPTYEDLLNKLQTIVPPKGLAR---FTEDSLLRYAQFICDQVISFDASARPEDPL 392

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 393 LITSPCMRAL 402


>gi|345482937|ref|XP_001600175.2| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI [Nasonia
            vitripennis]
          Length = 1404

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 301/911 (33%), Positives = 468/911 (51%), Gaps = 125/911 (13%)

Query: 739  ITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVE-VDELDQLPVIYFVEYMFEATGGCK 797
            I W GE ++ +    Y   +++ +V+     + +E ++    + VI  V+YM+E   G K
Sbjct: 516  IEWMGEPIQSAKGDFYNAVMINHDVIKKNDYIFIEPINSSVPMQVIK-VKYMWENKMGIK 574

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            + HG  + RGS T+LG T+  RE+FL ++C+D+ L  ++    V +R        + ++ 
Sbjct: 575  ILHGTWLWRGSETILGETSLPRELFLVDECQDVPLIYVQAKANVLVREYSNDCTEKGNLC 634

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF--ILPVDSMGLGVGSCHACGT--- 912
              + +D        K+     +Y K   +    A F  +LP  +   G   C  C T   
Sbjct: 635  VGNIIDAL------KENSMILFYQKR--YDHVAARFEDLLPELNPPKGAEHCF-CSTCAR 685

Query: 913  ------KESEKEKETFKVHSKTSFVYGTAEYFVHDY-----VYISPHHFTW-------DK 954
                    + +  E           YG   Y   ++     VY+ P  FT+       D 
Sbjct: 686  DILSKMNRTPQLLELLDDTDDKRIKYGIIRYLNEEFRVGSAVYLKPKTFTFEFPNMNQDT 745

Query: 955  AEG------------ETFKA------GRNVGL-KPYVVCQLLEIIVPKEPKRAEVKSTQV 995
            + G            E ++       G NV   +P+ +  +  I    + K     +  V
Sbjct: 746  SRGQKREIVDEEKYPEAYRKFNDRVKGSNVDTPEPFDIGYITSIYSTSKSKLLAGVNAYV 805

Query: 996  KVRRFFRPDDISAEKAYC--SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAP 1051
             V++ +RP++    ++    SD+  +Y+S+E   + +  I GKC +    ++        
Sbjct: 806  TVKKMYRPENTHRGESLKKKSDMNMLYWSDEECDVRLNCIVGKCYIAYSENLNQSIEEWS 865

Query: 1052 AIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEK 1111
            A   H F+    +D +     + PAH     +     S     + K K  + E  +E   
Sbjct: 866  ASGPHRFYFSEAYDLNNEEYTEPPAH-----ACSVTKSFKKDVKAKSKSKKVETIIEDIP 920

Query: 1112 QGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN 1171
                   + L TLD+FAGCGGLSEGL+Q+G++ + WAIE +  A  A++LN+P++ +   
Sbjct: 921  VSLPQISHKLRTLDVFAGCGGLSEGLKQAGVAESLWAIENDTAAAHAYRLNNPKASVFTT 980

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSG 1231
            +CN  L  V+           TS   +           +LP  G+VD + GGPPCQGFSG
Sbjct: 981  DCNSFLEKVING--------ETSLGGQ-----------SLPKKGEVDLLCGGPPCQGFSG 1021

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
            MNRFN   +S  +  +I++F+SF DY++PR+FL+ENVRNFVSF K    +LTL+ L  MG
Sbjct: 1022 MNRFNSRAYSSFKNSLIVSFISFCDYYKPRFFLMENVRNFVSFKKSAVLKLTLSCLSRMG 1081

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS-DNYQYS 1350
            YQ  FGIL+AG++G+ Q+R+R  + AA+P + LP +P P+HVF+    ++ +  DN +Y 
Sbjct: 1082 YQCTFGILQAGSYGIPQTRRRMILIAAAPGEILPRFPNPLHVFSKSTCQLTVDVDNVKYF 1141

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM---AVLT 1407
                    AP+RA+TV D + DLP + +G+++ +M Y+NDP++ FQ+++R  M     L 
Sbjct: 1142 TFTDVHESAPYRAITVYDALSDLPKIKSGSNEVVMRYENDPLTHFQRKMRSGMDDELALY 1201

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------------- 1446
            DHI K++  L   R   IP + G+DW DLP+  V+LS G                     
Sbjct: 1202 DHICKDLGPLVEARMGLIPTKTGSDWRDLPNIVVRLSDGTCTTKLEYKYNDKKAGVSSTG 1261

Query: 1447 -------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ 1487
                               QV  LIPWCLP+TA RHN W GL+GR++W+G F T+IT+P+
Sbjct: 1262 APRGICSCSEGKSCSLRDKQVNTLIPWCLPHTANRHNHWAGLYGRIEWDGFFSTTITNPE 1321

Query: 1488 PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            PMGK G   HP+Q R+++VRECARSQGFPDS++F+GSIQ KHRQIGNAVPP LA A+G +
Sbjct: 1322 PMGKQGRVLHPEQTRVVSVRECARSQGFPDSFRFYGSIQDKHRQIGNAVPPPLAKAIGLE 1381

Query: 1548 LKEAVESKRST 1558
            ++++V  K + 
Sbjct: 1382 IRKSVSLKEAN 1392



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 27/167 (16%)

Query: 138 LFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGS-PVIWLSTDIADYDCLKP 196
           +++SG + P+  S D   E  V  +  G I  W ++G++ G   +I LST + +Y  ++P
Sbjct: 207 IYLSGYVKPIY-SDDSSIEGAVPSKDIGPIVEWFVTGFDGGQDAIIVLSTPLGEYYLMQP 265

Query: 197 ASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDE-------LLAG--VVRSMSGS 247
           +  Y  +          C++    +SKT     +C +DE       LL     +   SG 
Sbjct: 266 SDDYSPFMR--------CVKEKTFISKTV---IECLLDEPNSEYEDLLNKFETIPMPSGL 314

Query: 248 KCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
             F      ++ +I   +FI +Q++  DE++  ++ +    P + ++
Sbjct: 315 PRF-----TEELLIHHAQFICDQILSFDESALSDEPQLIHAPCVKSI 356


>gi|283549178|ref|NP_001164522.1| DNA methyltransferase 1a [Apis mellifera]
          Length = 1366

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 299/916 (32%), Positives = 456/916 (49%), Gaps = 128/916 (13%)

Query: 738  EITWEGECVRKSGLALYKKAIVHG-EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC 796
            +I W G+ +    L  Y K+++ G E + +   VLVE         +  V YM+E   G 
Sbjct: 475  DIIWIGDQIANDNLKTYYKSVIVGDEEIGINDYVLVEPRNPAIPSHVAKVIYMWENKNGI 534

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDI 856
            K FH   + RG+ T+LG T++  E+FL++ C D+  + ++    V  + +    ++  ++
Sbjct: 535  KQFHANWLHRGNDTILGETSDPIELFLSDDCDDIPFKSVRSKCTVIFKEI---QKNWNEL 591

Query: 857  ANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS----CHACGT 912
             N D       E   K      ++ +  Y PE   F     D   L   +    C AC  
Sbjct: 592  GNMD----LNFENDIKDLDGKTFFFQKRYIPETARFEDPVPDVKYLHKKNSYRFCPACTR 647

Query: 913  KESEKEKETFKVHSKTS------FVYGTAEYFVHDY-----VYISPHHFTW--------- 952
                ++  T KV+ +         +YG  +Y   DY     V++ P  F +         
Sbjct: 648  LNMLEQFNTPKVYERIEEINSKEVIYGLVKYKGEDYRVGTTVFLQPDVFNFKYKTTYQDV 707

Query: 953  ---------------------DKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVK 991
                                 D  +G  F         P+ +  + +I            
Sbjct: 708  LKLKKENVDEDMYPEFYRKSSDHIKGSNFDTP-----DPFCIGYINKIFANTNDMLVSPS 762

Query: 992  STQVKVRRFFRPDDISAEKAYC--SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
               + V + +RP++          +D+  VY+S E   I    + GKC +    ++    
Sbjct: 763  DINIMVNKLYRPENTHKSSTLMEQADLNMVYWSNEVCNIKFIKVVGKCYLTYSENLNQSI 822

Query: 1050 APAIFQ--HIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
               I    + F+    ++  + +  + P H     S G       + + KGK  E  ++ 
Sbjct: 823  EEWIAAGPYRFYFNEAYNVQEKTFDEPPYHA---ISIGKCGKSKGNLKFKGKKTEESEKR 879

Query: 1108 EVEKQGGASQE--NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165
             +       ++    L TLD+FAGCGGLSEGL Q+G++   WAIE EE A  A++LN+P 
Sbjct: 880  AIVNTPIEYKKISEKLKTLDVFAGCGGLSEGLHQAGVAENLWAIEKEESAAYAYRLNNPN 939

Query: 1166 SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPP 1225
            + + I +CNV+L+ VM   G+     +T+E  +            LP  GQV+ + GGPP
Sbjct: 940  ATVFIEDCNVLLKKVMN--GE-----TTNEIGQ-----------KLPQKGQVELLCGGPP 981

Query: 1226 CQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
            CQGFSGMNRFN   +S  +  +++++LS+ DY++P +F++ENVRNFVSF +    +LTL 
Sbjct: 982  CQGFSGMNRFNSRQYSLFKNSLVVSYLSYCDYYRPNFFIMENVRNFVSFKRSMVLKLTLR 1041

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLS 1344
             L+ MGYQ  FGIL+AG +G+ Q+R+R  I AA+P   LP++PEP HVF+    ++ +L 
Sbjct: 1042 CLIRMGYQCTFGILQAGNYGIPQTRRRMIILAAAPGQMLPKYPEPSHVFSKRACQLSVLV 1101

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN-- 1402
            DN +YS+  +  + APFR ++V+D + DLP + NG +K  M Y N+P + FQ+++RG   
Sbjct: 1102 DNKKYSSNCNWIDSAPFRTISVKDAMFDLPEIKNGWNKEEMSYTNEPTTHFQRKMRGKQY 1161

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------- 1446
              +L DHI KEM  L   R   IP   G+DW DLP+  V+LS G                
Sbjct: 1162 QPLLRDHICKEMTPLVEARMAHIPIASGSDWRDLPNIAVRLSDGTYCKQLEYTHDDKKAG 1221

Query: 1447 ------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                                    Q   LIPWCLP+T  RHN W GL+GRL+W G F T+
Sbjct: 1222 RSSVGAYRGVCCCCTGKSCDPTDRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWNGYFSTT 1281

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            IT+P+PMGK G   HP Q R+++VRECARSQGFPDS++F+G+I  KHRQIGNAVPP L  
Sbjct: 1282 ITNPEPMGKQGRVLHPVQTRVVSVRECARSQGFPDSFRFYGTILDKHRQIGNAVPPPLGV 1341

Query: 1543 ALGRKLKEAVESKRST 1558
            A+G +++  +++K  T
Sbjct: 1342 AIGHEIRNCIQNKDIT 1357



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 18/193 (9%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFG 165
           +RP  +L  F ++D+NG     +   I+    L+ SG I  + E  D   E GV  +  G
Sbjct: 147 ERPQNKLTYFSVYDKNGHLCSFDTGLIEKNVMLYFSGYIKAIYEE-DASPEGGVPTKDMG 205

Query: 166 RIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G   +I  +T  A+Y  + P+  Y  + ++  EK    I + K + + 
Sbjct: 206 PINEWYVSGFDGGELALIGFNTAFAEYILMDPSEEYAPFMDIVKEK----IYMSKLVIEF 261

Query: 225 SGGNSDCSIDELL---AGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKN 281
                + S ++LL     +V   + SK        +D ++   +FI +Q++  D ++   
Sbjct: 262 LLDEINPSYEDLLNKFQTIVPPKNMSK------FTEDSLLRHAQFICDQVLSFDNSADSE 315

Query: 282 DQKFAELPVLVAL 294
           D      P + AL
Sbjct: 316 DTLLITSPCMRAL 328


>gi|340719551|ref|XP_003398214.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Bombus
            terrestris]
          Length = 1442

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 306/911 (33%), Positives = 458/911 (50%), Gaps = 119/911 (13%)

Query: 733  RSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFE 791
            +  +KEITW GE +   G    Y   IV  E +     VL+E ++      I  V YM+E
Sbjct: 545  KHVEKEITWVGEPIVDDGRRTFYNSVIVVDEEIKGNDCVLIESNDPTVPLQIAKVIYMWE 604

Query: 792  ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQ 851
               G KL H    +RGS TVLG T++  E+FL ++C ++    +K    V  ++ P    
Sbjct: 605  DKSGAKLCHANWFRRGSDTVLGETSDPLELFLLDECDNVPFTSVKSKATVIYKTCPKNWN 664

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDS----MGLGVGSC 907
               ++   D++        + K   T +Y K  Y PE   F     D       +    C
Sbjct: 665  ELGNVLPEDEI--------QNKDGKTFFYQKK-YTPETARFEDCTSDPECPRKEISHRFC 715

Query: 908  HACG--------------TKESEKEK------------ETFKVHSKTSFVYGTAEYFVHD 941
             AC                +E EK              E F+V S    +    +Y    
Sbjct: 716  PACVRFTTLQCYYTPKVFNREEEKSNKEVTYSMVKYKGEEFRVGSTVFLMPAAIKYKFTS 775

Query: 942  YVYISPH----------HFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVK 991
              +ISP           +  + +   +  K       +P+ +  +  I      K     
Sbjct: 776  TYHISPKVKKGKVDEDMYPEYYRKSSDHVKGSNCDTPEPFHIGYINSIYATTNNKLVASS 835

Query: 992  STQVKVRRFFRPDDISAEKAYCS--DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC- 1048
               +K+ + +RP++           D+  VY+SEE   +    +AGKC +    ++    
Sbjct: 836  DIWIKINKLYRPENTHKGLTLMQQVDLNMVYWSEEVCDVKFSDVAGKCYLAYSENLDQSV 895

Query: 1049 -NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
                A   + F+    ++  + +    P +  +      +       + K K +E  D+ 
Sbjct: 896  EEWTAAGPNRFYFSQAYNALEKTFVD-PPYYAMNIGKSVIGKGKGKAKCKSKKLENSDKK 954

Query: 1108 EVEKQGGASQE-NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166
             V+K     +    L TLD+FAGCGGLSEGL+Q+GI   +WAIE +EPA  A++LN+P +
Sbjct: 955  IVDKPIDYCKVIRKLKTLDVFAGCGGLSEGLRQAGIVDNQWAIERDEPAACAYRLNNPNT 1014

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPC 1226
             +   +CNV+LR VM+  GD                L +N    LP  G+V+ + GGPPC
Sbjct: 1015 TVFCEDCNVLLRKVMK--GD----------------LCDNNGQRLPQKGEVELLCGGPPC 1056

Query: 1227 QGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            QGFSGMNRFN   +S  +  ++++ LS+ DY++P++F++ENVRNFVSF +    +LTL  
Sbjct: 1057 QGFSGMNRFNSRQYSLFKNSLVVSCLSYCDYYRPKFFIMENVRNFVSFKRSMVLKLTLRC 1116

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLS 1344
            LL MGYQ  FGIL+AG +G+ Q+R+R  I AA+P + LP++PEP HVF+  A +L +++ 
Sbjct: 1117 LLRMGYQCTFGILQAGNYGIPQTRRRLIILAAAPGEVLPKYPEPTHVFSKRACQLSVIV- 1175

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM- 1403
            DN +YS+       AP+R ++VRD + DLP + NG +   M Y ++P+S FQ+++R    
Sbjct: 1176 DNKKYSSNCDWIESAPYRTISVRDAMSDLPNIRNGWNTEEMAYSDEPISHFQRKVRPKEP 1235

Query: 1404 -AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------- 1446
             A+L DHI K+M  L   R   IP   G+DW DLP+  V+LS G                
Sbjct: 1236 DAILRDHICKDMAPLVEARIAHIPTASGSDWRDLPNIAVRLSDGTYSKKLEYLYHDKKAG 1295

Query: 1447 ------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                                    Q   LIPWCLP+T +RHN W GL+GRL+W+G F T+
Sbjct: 1296 KSSIGAHRGVCSCCAGKMCDPIARQYNTLIPWCLPHTGRRHNHWAGLYGRLEWDGFFGTT 1355

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            IT+P+PMGK G   HP+Q R+++VRECARSQGFPDS++F+G+I  KHRQIGNAVPP L  
Sbjct: 1356 ITNPEPMGKQGRVLHPEQTRVVSVRECARSQGFPDSFRFYGNILDKHRQIGNAVPPPLGA 1415

Query: 1543 ALGRKLKEAVE 1553
            ALG ++++ +E
Sbjct: 1416 ALGFEIRKCLE 1426



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFG 165
           +RP  +L  F ++D+NG     +   I+    L+ SG + P+ E +    E GV  +  G
Sbjct: 222 ERPQNKLTHFCVYDKNGHLCSFDTGLIEKNVVLYFSGYMKPIYEENSC-PEGGVPTKDMG 280

Query: 166 RIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W +SG++ G   ++  +T  A+Y  ++PA +Y  + +   EK    I + K + + 
Sbjct: 281 PINEWWVSGFDGGELALVGFTTAFAEYILMEPAEAYAPFMDSVKEK----IYMSKIVIEF 336

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
                + + ++LL  +   +      R     +D ++   +FI +Q+I  D +++  D  
Sbjct: 337 LLDEINPTYEDLLNKLQTIVPPKGLAR---FTEDSLLRYAQFICDQVISFDASARPEDPL 393

Query: 285 FAELPVLVAL 294
               P + AL
Sbjct: 394 LITSPCMRAL 403


>gi|402904162|ref|XP_003914916.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Papio anubis]
          Length = 1706

 Score =  488 bits (1256), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 316/945 (33%), Positives = 470/945 (49%), Gaps = 170/945 (17%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 787  ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSINGQ 846

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I   V V  +S    W  +   D
Sbjct: 847  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKSPSENWAMEGGMD 906

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
              +  + D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 907  PESLLEGDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKFKFCASCAR 954

Query: 913  KESEKEKETFKVHSK-----TSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +     +  +Y +A      Y V D VY+ P  FT++       K 
Sbjct: 955  LAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGIPYRVGDGVYLPPEAFTFNIKLSSPVKR 1014

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY + ++ EI  PK+   R      +++V
Sbjct: 1015 PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRV 1074

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 1075 NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 1134

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E E+
Sbjct: 1135 GPNRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEKEI 1190

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1191 KLP-------KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVF 1243

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CN++L+ VM              A E   S  +     LP  G V+ + GGPPCQGF
Sbjct: 1244 TEDCNILLKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGF 1285

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL------- 1282
            SGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVS                
Sbjct: 1286 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSXXXXXXXXXXXXXXXX 1345

Query: 1283 --------------TLASLLEMGYQVRFGILE-------------AGAFGVSQSRKRAFI 1315
                          +  SL E   Q     ++             AG +GV+Q+R+RA I
Sbjct: 1346 XAGRWMWPAHDPASSQPSLTESRVQWHRPAIQAAEAGVVLCPTGGAGQYGVAQTRRRAII 1405

Query: 1316 WAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDL 1373
             AA+P + LP +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DL
Sbjct: 1406 LAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDL 1464

Query: 1374 PAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            P V NGAS   + Y  +P SWFQ+++RG     +L DHI K+M+ L   R + IP  PG+
Sbjct: 1465 PEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGS 1524

Query: 1432 DWHDLPDEKVKLSTG-----------------------------------------QVVD 1450
            DW DLP+ +V+LS G                                         Q   
Sbjct: 1525 DWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNT 1584

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECA
Sbjct: 1585 LIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECA 1644

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            RSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++K  + +K
Sbjct: 1645 RSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAK 1689



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 459 PQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 517

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 518 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 573

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            NSD + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 574 SNSDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 628

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 629 QPIFLTPCMRDL 640


>gi|307193684|gb|EFN76367.1| DNA (cytosine-5)-methyltransferase 1 [Harpegnathos saltator]
          Length = 1460

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 361/1224 (29%), Positives = 571/1224 (46%), Gaps = 222/1224 (18%)

Query: 488  GGFPIY-LSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAI 544
            GG P   +  I EW +    G  +  I   T  A Y L +PS+ YAP+   V +   ++ 
Sbjct: 238  GGVPTKDMGPINEWYVSGFDGGELALIGFNTAFAEYILMEPSEAYAPFMTAVREKIYMSK 297

Query: 545  SIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERY----VVVHGQIVLQL 600
             +I  L ++   S   + D++ +L           S  P  + ++    ++ H Q +   
Sbjct: 298  LVIEFLLDEITPS---YEDLLNKLQ---------TSVPPKGMTKFTEDSLLRHAQFICDQ 345

Query: 601  FAEYPDE-QIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRK 659
               + D  +I+    II    +    +    L K+  V+++  N             K+K
Sbjct: 346  VLSFDDSAEIEDALLIISPCMRSLANYGGVTLGKRTAVRRAPPN-------------KQK 392

Query: 660  VMQ-----ATTTRLINRIWGEYYSN----YSPED-------------------------- 684
            V Q     ATTT+L++ ++  ++++    +  +D                          
Sbjct: 393  VKQPAWTKATTTKLVSNMFENFFTDQLAKHDDDDKIKMGPKRQRCGICENCQQPDCGACV 452

Query: 685  -----------GKEETACEANE------DEEVEEQGENEEDDTEEEKLISEERQISCSVA 727
                       G+ + AC           E  +   ENEEDD  E     EE+       
Sbjct: 453  SCKDMIKFGGTGRSKQACVRRRCPNMAIQEADDSDLENEEDDGLENDEKIEEKP------ 506

Query: 728  VQIKSRSTKKEITWEGE-CVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPV-IYF 785
             +   +  KK+I W G+  + +     YK  +V  E + L   VLVE      +P+ I  
Sbjct: 507  -KKDFKELKKDIVWMGDDKIIEGRRTFYKSVMVGNEKIELNDYVLVEPRN-SAIPLHIAK 564

Query: 786  VEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRS 845
            V YM+E   G K FH   ++RG+ T+LG TA+  EVFL++ C D+  + +     V  + 
Sbjct: 565  VMYMWENKIGIKQFHANWVRRGTDTILGETADPMEVFLSDDCEDVPFKSVNSKATVLHKK 624

Query: 846  VPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVG 905
             P   +    + N D  D  +  + K       ++ K  Y  E   F     D   L   
Sbjct: 625  TP---EDWSKLGNMDINDTIKDTDGKT------FFYKMRYTSETARFEDPLPDPECLRKE 675

Query: 906  S----CHACGTKESEKEK------ETFKVHSKTSFVYGTAEYFVHDY-----VYISPHHF 950
            +    C AC    + ++       E  +  S     YG  +Y   +Y     V++ P  F
Sbjct: 676  NSHRFCPACAHLRTLEQYNRPRVCERLEEKSSREVTYGIVKYKGEEYRVGSAVFLRPSAF 735

Query: 951  ----TWDKAE--------------GETFKA--------GRNV-GLKPYVVCQLLEIIVPK 983
                 W   E               E ++         G N+   +P+ +  +  I    
Sbjct: 736  KFKYIWTYQEIPLPKKENVDEDIYSEFYRKSSDHLRIKGSNLLTPEPFHIGYINAIYATT 795

Query: 984  EPKRAEVKSTQVKVRRFFRPDDISAEKAYC--SDIREVYYSEETHLIFVEAIAGKCEVRK 1041
                       +KV R +RP++   +      +D+  VY+S+E   +    +AGKC +  
Sbjct: 796  NNMLVSPSDIYIKVNRMYRPENTHRDSTLMEQADLNMVYWSDEVFNVRFTEVAGKCYLAY 855

Query: 1042 KNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRR 1095
              ++       + + P  F   +F E  ++  + +  + P  I      G    +   + 
Sbjct: 856  SENLSESVEEWSASGPYRF---YFTES-YNAKEKTFDEPPYSIINMGKPGKGKGKGKLKT 911

Query: 1096 KKGKCIEGEDELEVEKQGGASQ-ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
            K  +  E E++  ++K    S     L TLDIFAGCGGLS+GL ++G++ T WAIE EE 
Sbjct: 912  KTVE--ETENKPVIDKPANYSTITRRLRTLDIFAGCGGLSDGLHEAGVAETLWAIEKEET 969

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            A  AF+LN+P + +   +CN +LR VM+  GD                +DEN     P  
Sbjct: 970  AAYAFRLNYPNATVFSTDCNTLLRKVMK--GD---------------RIDENG-QKYPQK 1011

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G+V+ + GGPPCQGFSGMNRFN   +S  +  ++++ LS+ DY++P++F++ENVRNFV+F
Sbjct: 1012 GEVELLCGGPPCQGFSGMNRFNLRQYSLFKNSLVVSCLSYLDYYRPKFFVMENVRNFVTF 1071

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
             +    +LTL  L+ MGYQ  FGIL+AG +GV Q+R+R  I AA+P +TLP +PEP +VF
Sbjct: 1072 KRSMVLKLTLCCLVRMGYQCTFGILQAGNYGVPQTRRRLIILAAAPGETLPCYPEPTNVF 1131

Query: 1335 AAPELKI-MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVS 1393
                 ++ ++ DN +YS+  +    APFR ++VRD + DLP + NG +K  M Y N+P+S
Sbjct: 1132 TRRCCRLSVVVDNRKYSSNCAWKESAPFRTISVRDAMSDLPPIKNGWNKEEMPYGNEPMS 1191

Query: 1394 WFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS------- 1444
             FQ+++RG     +L DHI KEM  +   R   IP   G+DW DLP+  ++LS       
Sbjct: 1192 HFQRKVRGKQYQPMLRDHICKEMAPIIEARIAHIPTASGSDWRDLPNIVLQLSDNTFANK 1251

Query: 1445 -------------------------TGQVVD--------LIPWCLPNTAKRHNQWKGLFG 1471
                                     TG+  D        LIPWCLP+T  RHN W GL+G
Sbjct: 1252 LEYTYHDKRAGESSISALRGVCSCCTGRPCDPTDKQFNTLIPWCLPHTGNRHNHWSGLYG 1311

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL+W+G F T++T+P+PMGK G   HP Q R+++VRECARSQGF D ++F+G++  KHRQ
Sbjct: 1312 RLEWDGFFSTTVTNPEPMGKQGRVLHPVQTRVVSVRECARSQGFRDMFRFYGTVHDKHRQ 1371

Query: 1532 IGNAVPPTLAFALGRKLKEAVESK 1555
            +GNAVPP L  A+G ++++ + ++
Sbjct: 1372 VGNAVPPPLGTAIGHEIRKCIRNE 1395



 Score = 50.1 bits (118), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 127/306 (41%), Gaps = 32/306 (10%)

Query: 1   MGSAALLDSKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRK 60
           M +    D +  N Q   D +E + +KR     +  TKD    + + + ++  D+     
Sbjct: 84  MNNKVEFDKENYNPQVNQDQTEEQLEKR-----IKITKDKNHDEMQSILEVKVDTSLIAN 138

Query: 61  RPKRMAACTDFKEKSVR------ISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRR 114
           R +      D   K  +      + E+  L + K   +  DE         +  +RP  +
Sbjct: 139 RCEYCKQKIDLNLKLYQGHPNGAVEEQIALTDPKLCLFTGDESFI-----HESDERPQNK 193

Query: 115 LNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFGRIESWS 171
           L  F ++D+NG   P +   I+    L+ SG +  + E  D   E GV  +  G I  W 
Sbjct: 194 LTYFSVYDKNGHLCPFDTGLIEKNVMLYFSGYMKAIYEE-DPSPEGGVPTKDMGPINEWY 252

Query: 172 ISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSD 230
           +SG++ G   +I  +T  A+Y  ++P+ +Y      F    R  I + K + +       
Sbjct: 253 VSGFDGGELALIGFNTAFAEYILMEPSEAYAP----FMTAVREKIYMSKLVIEFLLDEIT 308

Query: 231 CSIDELLAGVVRSM--SGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAEL 288
            S ++LL  +  S+   G   F      +D ++   +FI +Q++  D++++  D      
Sbjct: 309 PSYEDLLNKLQTSVPPKGMTKF-----TEDSLLRHAQFICDQVLSFDDSAEIEDALLIIS 363

Query: 289 PVLVAL 294
           P + +L
Sbjct: 364 PCMRSL 369


>gi|449674400|ref|XP_002155714.2| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI-like [Hydra
            magnipapillata]
          Length = 1283

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 318/937 (33%), Positives = 478/937 (51%), Gaps = 145/937 (15%)

Query: 697  EEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGE-CVRKSGLALYK 755
            +E EE     +D  E+E ++    +   S     K +  K  + W  E  V + G  LYK
Sbjct: 396  QEAEEDALCSQD--EDEPMLKSPSKTDLSPRHHRKGQEKKSFVKWACEDFVERKGKKLYK 453

Query: 756  KAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT 815
               ++ E++++G  V V   +      I  V YM+E   G K FH   + R S TVLG  
Sbjct: 454  SVQINNELINIGEFVQVYPTDPSDPLYICRVMYMWEDLNGDKKFHAQWLYRSSETVLGEV 513

Query: 816  ANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKK 873
             +  EVFL++ C D++L  I  K  V     S  W            K D   +EE    
Sbjct: 514  GDPSEVFLSDDCDDIKLGAIMSKCNVSSKFASENW-------FMEGGKEDCIISEEN--- 563

Query: 874  GLPTEYYCKSLYWPERGAFFILPVDSM--GLGVGSCHACG------------------TK 913
                E + +  Y  E G F   P + +        C +C                   T+
Sbjct: 564  ---NELFYQKWYDYEDGLFTDPPTEFLLSKFDEKYCPSCERTKTKLKYKQPTLGDELETE 620

Query: 914  ESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVV 973
             S K +  FK+  K+                  P + +  K E E  +  R      Y+ 
Sbjct: 621  NSTKSEHCFKIKQKSEL----------------PKNKSVVKDEDEYPELYRKSN--DYIK 662

Query: 974  CQLLEIIVPKEPKRAE----VKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHL 1027
               + I+   EP R +    +KS  +KVR+F+RP++           D+  VY+S E   
Sbjct: 663  GSNINIV---EPFRIDNYGGMKSIMLKVRKFYRPENTHKGMSGTMNCDLNMVYWSNEEAT 719

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHI------FFCEHLHDPSKGSLKQLPAHIKLR 1081
            +  + + GKC V   +D        +F+        F+    +D  K      P      
Sbjct: 720  VDFQMVEGKCYVLFADDADM----DMFKFTEAGPDRFYFREAYDADKKEFDVPPREAWNS 775

Query: 1082 YSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSG 1141
                      +++++ G         +VEK         L TLDIFAGCGGLSEGL Q G
Sbjct: 776  NKGKGKGKSKSTKQQNGLESNFPAYEKVEK---------LRTLDIFAGCGGLSEGLDQVG 826

Query: 1142 ISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAA 1201
            + ++ WAIE+E  A +A++LN+P +++   +CN +L+ +ME  G  +D            
Sbjct: 827  VVNSCWAIEFEPSAAQAYRLNNPSAIVFNQDCNNVLKQIME--GKEKD------------ 872

Query: 1202 SLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPR 1261
                ++   LP  G+VD + GGPPCQGFSGMNRFNQ  +S  +  ++ ++LS+ DYF+P+
Sbjct: 873  ----DLGQRLPRRGEVDLLCGGPPCQGFSGMNRFNQREYSMFKNSLVTSYLSYCDYFRPK 928

Query: 1262 YFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPH 1321
            +F+LENVRNFVSF K    +LTL+ L++MGYQ  FG+L+AG++GV Q+R+RA I AA+P 
Sbjct: 929  FFILENVRNFVSFKKSMVLKLTLSCLVKMGYQCEFGVLQAGSYGVPQTRRRAIIIAAAPG 988

Query: 1322 DTLPEWPEPMHVFAAPELKIMLSDN-YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGA 1380
            + LP++PEP HVFA+  L + ++ N ++Y A++   + AP+R  TV D + DLP + NGA
Sbjct: 989  EILPKFPEPQHVFASKALSLSVTINSHKYQALKRL-HSAPYRTTTVYDAMSDLPEIKNGA 1047

Query: 1381 SKTIMEYQNDPVSWFQKRIRG-NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE 1439
            +K  + Y  +P++ FQK+IRG +M VL DHI K+M+ L   R   IP  PG+DW DLP++
Sbjct: 1048 NKMEIGYDTEPLTHFQKKIRGKHMQVLRDHICKDMSPLVEARMSYIPCIPGSDWRDLPNK 1107

Query: 1440 KVKLSTG----------------------------------------QVVDLIPWCLPNT 1459
             VKL  G                                        Q   LIPWCLP+T
Sbjct: 1108 VVKLRDGNTTKLLLYLHKDKKQGPGKNGENRGVCACANGKPCDPSDRQFNTLIPWCLPHT 1167

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
              RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VREC+RSQGFPDS+
Sbjct: 1168 GNRHNNWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECSRSQGFPDSF 1227

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            +F+G+I  KHRQIGNAV P ++ A+G+++++++ +K+
Sbjct: 1228 RFYGNILDKHRQIGNAVAPPMSAAIGQEIRKSIIAKK 1264



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           DRP  ++ +F ++D+ G     +   I+   +LF SG + P+ +  + + E G+  +  G
Sbjct: 107 DRPQHKVTEFSVYDKCGHLCAFDTGLIEKNVELFFSGYVKPIFDE-NPDIEGGISTKAMG 165

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G + +I   T  A+Y  ++P+  Y  +     EK    I + K + + 
Sbjct: 166 PINEWWIAGFDGGENALIGFGTAFAEYILMRPSDDYASFMNAVTEK----IYMSKIVIEF 221

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETS 278
              N D   +ELL  +  ++    C +     +D ++   +F+  Q+   D  +
Sbjct: 222 LLNNPDSEYEELLNKLETTVPPENCAK---FTEDTLLQHAQFLVEQVESYDSAA 272


>gi|357626147|gb|EHJ76342.1| DNA cytosine-5 methyltransferase [Danaus plexippus]
          Length = 1363

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 370/1257 (29%), Positives = 587/1257 (46%), Gaps = 226/1257 (17%)

Query: 451  DVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSM 508
            DV I+ SG + S       + +DS          +D G        I EW I    G S 
Sbjct: 178  DVRIYMSGYLKS-------ICSDSPDIDEESIAVKDVG-------PIIEWFIHGFDGGSR 223

Query: 509  IFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRL 568
              I++ T+   Y L KPS +Y P  + + +   ++  ++  L+E   + + ++ D+++ +
Sbjct: 224  NCITLSTEFGEYNLLKPSAEYTPLMDNLYEKIWLSKVVVEYLEEYHYL-QPTYEDLLEVI 282

Query: 569  SEIKKDQHSYIS-SDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHH 627
             E     HS     D    E  +  H Q V         ++  +    +  M+++ +   
Sbjct: 283  RE-----HSIPDLEDKRMTEEMLHKHAQFVCDQVVSLEADEDNEPLITLPCMRELIKLMG 337

Query: 628  TKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPE---- 683
             K+   K+KV         RA +    + K+   +ATTT L+ + +  +++N   +    
Sbjct: 338  IKF--GKRKV---------RAKIDYKKIDKKAWTKATTTPLVQKTFEHFFANQLDKTNHE 386

Query: 684  -----------------DGKEETACEAN------------------EDEEVEEQGENEED 708
                             D  E  AC A                    +  V++  ++E +
Sbjct: 387  LVLRRKRCGVCEACQLPDCGECNACRAMLKFGGHGRTKKACVRRLCPNMAVQQAEDSEIE 446

Query: 709  DTEEEKLISEER---QISCSVAVQIKSRSTKKEITWEGECVRKSGLALY-KKAIVHGEVV 764
            D EE + ++E+R   +I  ++ V++   S K  I W G+ V+     +Y +K  + G  +
Sbjct: 447  DEEEYQQMAEKRHLDKIDDALPVKLTGGSNKI-IRWIGDPVKADATKVYYEKVEIDGSEL 505

Query: 765  SLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK--LFHGIIMQRGSHTVLGNTANEREVF 822
            SLG  V+VE  + +   ++  V YM++ +   K   FH  +  R S TVLG   + REVF
Sbjct: 506  SLGDFVMVETSQSNIPALVARVTYMWKESINPKSGYFHAEVFIRSSDTVLGEVGDPREVF 565

Query: 823  LANQ-CRDLELQDIKQTVVVDIRSVP--WGHQHRKDIANADKVDRARAEERKKKGLPTEY 879
            L ++ C    L  I +   V+ +  P  W     K++     VD    ++ K       Y
Sbjct: 566  LGDRCCHGAPLSSILRKAFVEKKETPADWFKLGGKEV-----VDHFFEDDGKT------Y 614

Query: 880  YCKSLYWPERGAFFILPVDSMGLGVGS----CHACGTKESEKEKETFKVHSKTS------ 929
            + +  Y      F  LP D            C +C  K     ++  K+  K +      
Sbjct: 615  FYQKYYERFTARFEDLPNDPECPNALRKHRFCPSCERKTRRDARDIPKISGKLTEKSEIV 674

Query: 930  -----FVYGTAEYFVHDY-----VYISPHHFTW----------------DKAE------- 956
                 F + T  +  HDY     V++ P  F +                DK +       
Sbjct: 675  KEANRFEWTTIRWRDHDYKKGCGVFLKPGTFRFKNSMINSSNGINRVKLDKVDEDIYPEY 734

Query: 957  ---GETFKAGRNVGL-KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAY 1012
                + +  G N+   +P+ V  +  +    E      +   +KV   +RP++ +    +
Sbjct: 735  YRKTDNYLRGSNIDTGEPFCVGYIAAVTAASEGPLVIPQDIYIKVNVMYRPENTNNRFPH 794

Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIF-FCEHLHDPSK--- 1068
              D+  VY+S+E   I   A+ G C +   ++IP  +      HI+ + E   DPS+   
Sbjct: 795  HEDVNVVYWSDEIKEISFSAVVGPCNICYVDNIPQQD------HIYDWLE--KDPSRVYF 846

Query: 1069 --------GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENH 1120
                    G ++ +P H+K          +   + K  K  +    ++V++     +   
Sbjct: 847  RMAFNKKSGQVEDVPQHVKYVGRGDKGKDKGKGKGKSSKGAQSTVTVKVDE----VKVRP 902

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L TLD+FAGCGGLSEGL +SG++  +WA+E  E A  A+ +N+   ++   +CN +L+  
Sbjct: 903  LRTLDVFAGCGGLSEGLHRSGVAECRWAVENLEAAAHAYSINNKNCIVFNEDCNALLKDA 962

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M+         +T  A  L           +P+ G+V+ + GGPPCQGFSGMNRFN   +
Sbjct: 963  MDG--------ATHSAGGL----------RIPMQGEVELLCGGPPCQGFSGMNRFNSREY 1004

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S  +  ++ ++LSF D+++P+YF+LENVRNFV+F KG   +LTL +LL+MGYQ  FGIL+
Sbjct: 1005 SNFKNSLVASYLSFCDFYRPKYFILENVRNFVAFKKGMVLKLTLRALLDMGYQCTFGILQ 1064

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS-DNYQYSAVRSTANGA 1359
            AG +GV Q+R+R  I AA+P   LP +PEP HVF+     +  + D  ++         A
Sbjct: 1065 AGNYGVPQTRRRLIILAAAPGYKLPLYPEPTHVFSRRACSLTTTIDGKRFVTNIQWDESA 1124

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNEL 1417
            P R  T++D + DLP + NGA++  ++Y   P ++FQ+ IR     A L DHI K M  L
Sbjct: 1125 PRRTCTIQDAMSDLPQICNGANRIEIDYGCMPETYFQRLIRSRDESAKLRDHICKNMAPL 1184

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------------------- 1446
               R  +IP  PG+DW DLP+  V LS G                               
Sbjct: 1185 IQARMSRIPTTPGSDWRDLPNISVALSDGTKCKVLQYRYDDIKNGRSTSGALRGVCACSA 1244

Query: 1447 ----QVVD-----LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1497
                 V D     LIPWCLP+TA RHN W GL+GR+ W+G F T++TDP+PMGK G   H
Sbjct: 1245 GGVCSVADKQENTLIPWCLPHTANRHNNWAGLYGRISWDGYFSTTVTDPEPMGKQGRVLH 1304

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
            P+Q+R+++VRECARSQGFPD+Y F GSIQ KHRQ+GNAVPP L  ALGR++K+A+ +
Sbjct: 1305 PEQNRVVSVRECARSQGFPDTYLFAGSIQDKHRQVGNAVPPPLGAALGREIKKALSA 1361



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 122 DENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG 178
           D++G   P++  ++E D  +++SG +  +   S    E+ +  +  G I  W I G++ G
Sbjct: 162 DQHGHLCPIDGGLIESDVRIYMSGYLKSICSDSPDIDEESIAVKDVGPIIEWFIHGFDGG 221

Query: 179 S-PVIWLSTDIADYDCLKPASSYKKYYELFFEK 210
           S   I LST+  +Y+ LKP++ Y    +  +EK
Sbjct: 222 SRNCITLSTEFGEYNLLKPSAEYTPLMDNLYEK 254


>gi|444525514|gb|ELV14061.1| DNA (cytosine-5)-methyltransferase 1 [Tupaia chinensis]
          Length = 1472

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 381/1294 (29%), Positives = 594/1294 (45%), Gaps = 219/1294 (16%)

Query: 397  SEEEFDELLAYDSDYDSCDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFG 456
            + E+     A +S ++S   + LP+  L  +S+Y     L  ++   ++  +++++   G
Sbjct: 192  TNEKLSIFDANESGFES--YEALPQHKLTYFSVYCKHGHLCPIDTGLIE--KNVELFFSG 247

Query: 457  SGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIR 514
            S K I D         D      GV+G          L  I EW I    G     I   
Sbjct: 248  SAKPIYD---------DDPSLEGGVNGKN--------LGPINEWWITGFDGGEKALIGFS 290

Query: 515  TDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKD 574
            T  A Y L  PS +YAP +   L   ++ IS I +   Q      ++ D+I ++      
Sbjct: 291  TSFAEYILMDPSPEYAPIFG--LMQEKIYISKIVVEFLQNNPDS-TYEDLINKIETTVPP 347

Query: 575  QHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKK 634
                ++      E  ++ H Q V++    Y DE        I L   M +      L+K 
Sbjct: 348  SGLNLNR---FTEDSLLRHAQFVVEQVESY-DEAGDSDEQPIFLTPCMRD------LIKL 397

Query: 635  KKVQKSEINLNPRASMGPVVVSKRK-VMQATTTRLINRIWGEYYSNYSPEDGKEET---- 689
              V   +     R ++      K K   +ATTT+L+ +I+  +++    +D +E+     
Sbjct: 398  AGVTLGQRRAERRQTIRHSTREKDKGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAF 457

Query: 690  ------ACEANEDEE----------VEEQGENEEDDTEEEKLISE--------------- 718
                   CE  +  E          V+  G        +E+                   
Sbjct: 458  KRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDN 517

Query: 719  --ERQISCSVAVQIKSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVD 775
              E      +    K +  K  I+W GE V+  G  + YKK  +  E + +G  V V  D
Sbjct: 518  IPEMPSPKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPD 577

Query: 776  ELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI 835
            +  +   +  V  ++E +   ++FH      G+ TVLG T++  E+FL ++C D++L  I
Sbjct: 578  DSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYI 637

Query: 836  --KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF 893
              K TVV    S  W  +   D  +  + D  +             Y   L++ +  A F
Sbjct: 638  HSKVTVVYKAPSESWALEGGLDPESMLEGDDGKT------------YFYQLWYDQDYARF 685

Query: 894  ILPVDSMGLGVGS---CHACGTKESEKEKETFKVHSK-----TSFVYGTAE-----YFVH 940
              P  +          C +C      ++KE  +V  +     +  +Y +A      Y V 
Sbjct: 686  ESPPQTQPTEENKYKFCASCARLAEMRQKEIPRVLEQLDDLDSRVLYSSATKNGTLYRVG 745

Query: 941  DYVYISPHHFTWDKAEGETFKAGRNVGL------------------------KPYVVCQL 976
            D VY+ P  F ++       K  R   +                        +PY + ++
Sbjct: 746  DGVYLPPEAFAFNIKLSSPVKRPRKEPVDEELYPEHYRKYSDYIKGSNLDAPEPYRIGRI 805

Query: 977  LEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAI 1033
             EI   K+   R      ++++ +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+
Sbjct: 806  KEIFCTKKSNGRPNETDIKIRLNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAV 865

Query: 1034 AGKCEVRKKNDIPAC------NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
             G+C V    D+P C        P  F   +F E  +  +K S +  P H +   + G  
Sbjct: 866  QGRCTVEYGEDLPECVQDYSDGGPDRF---YFLEAYNAKTK-SFEDPPNHARSPGNKGKG 921

Query: 1088 DSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKW 1147
              +   + K   C   E E E++          L TLD+F+GCGGLSEG  Q+GIS T W
Sbjct: 922  KGKGKGKAKSQTCEPSEREAEIKLP-------KLRTLDVFSGCGGLSEGFHQAGISETLW 974

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV 1207
            AIE  +PA +AF+LN+P + +   +CNV+L+ VM              A E A +  +  
Sbjct: 975  AIEMWDPAAQAFRLNNPGTAVFTEDCNVLLKLVM--------------AGETANARGQR- 1019

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
               LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLEN
Sbjct: 1020 ---LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLEN 1076

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            VRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +
Sbjct: 1077 VRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLF 1136

Query: 1328 PEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM 1385
            PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP + NGAS   +
Sbjct: 1137 PEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASALEI 1195

Query: 1386 EYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKL 1443
             Y  +P SWFQ+++RG+    +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L
Sbjct: 1196 SYNGEPQSWFQRQLRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRL 1255

Query: 1444 STGQVVDLI------------------------------------------PWCLPNTAK 1461
            S G +   +                                          PW LP    
Sbjct: 1256 SDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEGAARAASPCSHRDGGTGPWGLPAART 1315

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
              +  +GL  R   E   P S     P G+V    HP+Q R+++VRECARSQGFPD+Y+ 
Sbjct: 1316 WGSLPRGLGHRALAESKHPLS-----PQGRV---LHPEQHRVVSVRECARSQGFPDTYRL 1367

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             G+I  KHRQ+GNAVPP LA A+G ++K  V +K
Sbjct: 1368 FGNILDKHRQVGNAVPPPLAKAIGLEIKLCVAAK 1401



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 18/192 (9%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ ++G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 213 PQHKLTYFSVYCKHGHLCPIDTGLIEKNVELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 271

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P+  Y   + L  EK    I + K + +   
Sbjct: 272 NEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEK----IYISKIVVEFLQ 327

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQLIGLDETSKKND 282
            N D + ++L+  +  ++  S     G+++  F    ++   +F+  Q+   DE    ++
Sbjct: 328 NNPDSTYEDLINKIETTVPPS-----GLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDE 382

Query: 283 QKFAELPVLVAL 294
           Q     P +  L
Sbjct: 383 QPIFLTPCMRDL 394


>gi|351700800|gb|EHB03719.1| DNA (cytosine-5)-methyltransferase 1 [Heterocephalus glaber]
          Length = 1601

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 311/926 (33%), Positives = 456/926 (49%), Gaps = 169/926 (18%)

Query: 731  KSRSTKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            K +  K  I+W GE ++  G  + Y++  + GE + +G  V V  D+  +   +  V  +
Sbjct: 726  KMKQNKNRISWVGEAIKTDGKKSYYQQVCMDGETLEVGDCVSVIPDDPSKPLYLARVTAL 785

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVP 847
            +E +   ++FH      GS TVLG T++ RE+FL ++C D++L  I  K  V+    S  
Sbjct: 786  WEDSSNGQMFHAHWFCAGSDTVLGATSDPRELFLVDECEDMQLSYIHSKVNVIYKPPSEN 845

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTE--YYCKSLYWPERGAFF-----ILPVDSM 900
            W  +   D             E    G+P +   Y   L++ +  A F     I P +  
Sbjct: 846  WAMEGGMD------------PEATLPGIPKDGKTYFYQLWYDQDYARFESPPKIQPTEDN 893

Query: 901  GLGVGSCHACGTKESEKEKETFKVHSK-----TSFVYGTAE-----YFVHDYVYISPHHF 950
                  C +C      ++KE  +V  +     T  +Y +A      Y V D VY+ P  F
Sbjct: 894  KYKF--CASCARLAEMRQKEMPRVLEQLEDMDTRVLYSSATKNGILYRVGDGVYLPPEAF 951

Query: 951  TWDKAEGETFKAGRNVGL------------------------KPYVVCQLLEIIVPKE-- 984
            T++       K  R   +                        +PY + ++ EI  PK+  
Sbjct: 952  TFNIKLSSPVKRPRKEPVDEELYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSN 1011

Query: 985  --PKRAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR 1040
              P  AE+K   +K+ +F+RP++   S   +Y +DI  +Y+S+E  ++   A+ G+C V 
Sbjct: 1012 GKPNEAEIK---IKLYKFYRPENTHKSNPASYHADINLLYWSDEEAVVEFRAVQGRCTVE 1068

Query: 1041 KKNDIPAC------NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASR 1094
               D+P C        P  F   +F E  +  SK + +  P H +   + G    +   +
Sbjct: 1069 YGEDLPECLQEYSTGGPDRF---YFLEAYNAKSK-TFEDPPNHARSPGNKGKGKGKGKGK 1124

Query: 1095 RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
             K          LE  +   A     L TLD+F+GCGGLSEG  Q+GI  T WAIE  EP
Sbjct: 1125 TKS-------QALEPSEPEQAIDLPKLRTLDVFSGCGGLSEGFHQAGICETLWAIEMWEP 1177

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            A +AF+LN+P S +   +CNV+L+ VM              A E+   L +     LP  
Sbjct: 1178 AAQAFRLNNPGSTVFTEDCNVLLKLVM--------------AGEVTNLLRQR----LPQK 1219

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF
Sbjct: 1220 GDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSF 1279

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
             +    +LTL  L+ MGYQ  FG+L+    GV                     P   HV 
Sbjct: 1280 KRSMVLKLTLRCLVRMGYQCTFGVLQV-PVGV---------------------PPRQHVL 1317

Query: 1335 AAP-ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVS 1393
                  +   S     +  R   + APFR +TVRDT+ DLP + NGAS   + Y  +P S
Sbjct: 1318 CCCLGSRAGQSGGVSPALFRPRLSSAPFRTITVRDTMSDLPEIRNGASAPEIAYNGEPQS 1377

Query: 1394 WFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----- 1446
            WFQ+++RG+     L DHI K+M+ L   R + IP  PG+DW DLP+ +V L+ G     
Sbjct: 1378 WFQRQLRGSHYQPTLRDHICKDMSPLVAARMRHIPLAPGSDWRDLPNIEVHLTDGTLAKK 1437

Query: 1447 -------------------------------------QVVDLIPWCLPNTAKRHNQWKGL 1469
                                                 Q   LIPWCLP+T  RHN W GL
Sbjct: 1438 LRYTHHDKKNSCSSSGNLRGVCSCAEAAGRACDPTARQFNTLIPWCLPHTGNRHNHWAGL 1497

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            +GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +H
Sbjct: 1498 YGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRH 1557

Query: 1530 RQIGNAVPPTLAFALGRKLKEAVESK 1555
            RQ+GNAVPP LA A+G ++K  + +K
Sbjct: 1558 RQVGNAVPPPLAKAIGLEIKLCMLAK 1583



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+    L+ SG    + E +    E GV  +  G I
Sbjct: 405 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVKLYFSGTAKAIYEENP-SLEGGVNGKNLGPI 463

Query: 168 ESWSISGYEDGSPV-IWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+GY+ G  V I  ST  A+Y  ++P+  YK ++ L  EK    I + K + +   
Sbjct: 464 NEWWIAGYDGGEKVLIGFSTGFAEYFLMEPSPDYKPFFGLIQEK----IYMSKIVIEFLQ 519

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
           GN D + ++L+  +  ++  S         +D ++   +F+ +Q+   D+    ++Q   
Sbjct: 520 GNPDATYEDLINKIETTVPPST-INVNRFTEDSLLRHAQFVVSQVESYDDAKDSDEQPIF 578

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 579 LSPCMRDL 586


>gi|283462212|gb|ADB22400.1| DNA (cytosine-5-)-methyltransferase [Saccoglossus kowalevskii]
          Length = 820

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 293/843 (34%), Positives = 434/843 (51%), Gaps = 136/843 (16%)

Query: 806  RGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKDIANADKVD 863
            RG  TVLG  A+  EVF  ++C D  L+ +     +  ++ P  W     +++ N    D
Sbjct: 6    RGVDTVLGEMADPLEVFAVDECEDTALEYVMGKSKIMYKAPPENWSMLGGEEVENFITDD 65

Query: 864  RARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGTKESEKEKE 920
                           +Y +  Y P+   F  +PV      + S   C +C   E  ++ E
Sbjct: 66   DGNT-----------FYYQKWYDPDCARFEDIPVTQRPDDMPSHRYCDSCQRMEQIRKNE 114

Query: 921  TFKVHSK-------TSFVY------GTAEYFVHDYVYISPHHFTWD-------------- 953
            T  V  K          VY      G  +Y V D  Y+ P  F ++              
Sbjct: 115  TPHVSEKLEEDKQNPKVVYYSVLSKGGLDYRVGDSCYLLPGSFYFNVKPAPPPSKVSRKE 174

Query: 954  -----------KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR 1002
                       +   E  K       +P+ + ++++I   K P +  V+  ++KV +F+R
Sbjct: 175  NVDEEVYPEYYRKTSEYVKGSNIECPEPFRIGRIIKIFTKKSPNKL-VEEIKLKVVKFYR 233

Query: 1003 PDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQ---HI 1057
            P++       +Y SD+  +Y+S+E   I    I GKC V  + ++         +     
Sbjct: 234  PENTHKGVTASYTSDLNLLYWSDEEAEIAAYDIQGKCTVMFEEELNESVQEYTRKGRDRF 293

Query: 1058 FFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQ 1117
            +F E     SK   ++ P+  +     G    +  S             +EV KQ  A +
Sbjct: 294  YFLEAYCSKSK-EFEEPPSRARTIKGKGKGKGKGKS---------STPVIEV-KQVAAVK 342

Query: 1118 EN----HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            +N     L +LD+FAGCGGLSEG  QSG++ + WAIE EEPA +AF+LN+P   +  ++C
Sbjct: 343  DNFQYRKLRSLDVFAGCGGLSEGFHQSGVAESTWAIEKEEPAAQAFRLNNPGCTVFTDDC 402

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            N +LR VM+  G+  + V                   LP  GQV+ + GGPPCQGFSGMN
Sbjct: 403  NTLLRLVMD--GETTNSVG----------------QKLPQKGQVELLCGGPPCQGFSGMN 444

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFN   +SK +  +++++LS+ DY++P++FLLENVRNFVSF K    +LT+ SLL MGYQ
Sbjct: 445  RFNSREYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKKSMVLKLTMRSLLSMGYQ 504

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS-DNYQYSAV 1352
              FG+++AG +GV+Q+R+RA I AA+P + LP +PEP HVF+     + ++ D  +Y + 
Sbjct: 505  CTFGVVQAGLYGVAQTRRRAIILAAAPGEKLPFYPEPAHVFSPRACPLSVTIDEKKYESN 564

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG--NMAVLTDHI 1410
             +    AP+R +TVRD + DLP + NG +K  M Y  +  + +QK IRG  +  +L DHI
Sbjct: 565  MARVWSAPYRTITVRDALSDLPEIRNGYNKLEMSYDREAQNGYQKAIRGSQHQPILRDHI 624

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------------ 1446
             KEM+ L   R + IP  PG+DW DLP+  V+LS G                        
Sbjct: 625  CKEMSALVEGRMRHIPLAPGSDWRDLPNIAVRLSDGNTCKKLRYLHPDKKNGKGPNGQLR 684

Query: 1447 ----------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
                            Q   LIPWCLP+T  RHN W GL+GR++W+G F T++T+P+PMG
Sbjct: 685  GVCACAMNKPCDPTDRQFNTLIPWCLPHTGNRHNNWAGLYGRVEWDGYFSTTVTNPEPMG 744

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            K G   HP+Q R+++VRECARSQGFPD+Y+F+G+I  KHRQ+GNAVPP LA  LG ++K+
Sbjct: 745  KQGRVLHPEQHRVVSVRECARSQGFPDTYRFYGTILDKHRQVGNAVPPPLAKHLGLEIKK 804

Query: 1551 AVE 1553
              E
Sbjct: 805  CAE 807


>gi|242022906|ref|XP_002431878.1| DNA cytosine-5,-methyltransferase, putative [Pediculus humanus
            corporis]
 gi|212517219|gb|EEB19140.1| DNA cytosine-5,-methyltransferase, putative [Pediculus humanus
            corporis]
          Length = 1330

 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 314/943 (33%), Positives = 472/943 (50%), Gaps = 129/943 (13%)

Query: 699  VEEQGENEEDDTEEEKLISE--ERQISCSVAVQIKSRSTKKE-ITWEGECVRKSGLALYK 755
            +EE  E++ +D E  +  SE  E++I    ++ I   ST++   TW+G         + +
Sbjct: 426  LEEAEESDPEDEEVYQAKSEKLEKKIQ---SIDISLISTRRNPYTWDG---------ISQ 473

Query: 756  KAIVHGEVVSLGSAVLVEVDELDQLPV-IYFVEYMFEATGGCKLFHGIIMQRGSHTVLGN 814
             A+V+GE +S G  +    +E+   P+ I  VE+ F+    C   H   + RGS TVLG 
Sbjct: 474  TAVVNGETISAGDFIFA-FEEMASSPMHIARVEFFFKR-NFCDKVHCQKLCRGSETVLGE 531

Query: 815  TANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKDIANADKVDRARAEERKK 872
             ++ +E+F+  +C D  +  I   + V I+  P  W      +    D  D  +    KK
Sbjct: 532  MSHPQELFMIYECVDWPIHKIAMKINVKIQKPPSNWFELGGVNEEKEDLNDDGKTFFVKK 591

Query: 873  KGLPTEYYCKSLYWPERGAFFI---LPVDSMGLGVGSCHACGTKESEKEKETFKVHS--- 926
                     ++L   E+G   I    P   +  G+     C   E EK K      S   
Sbjct: 592  SYFSNYARFENLIEFEKGDNNIENQKPDTKLFCGI-----CKWSEREKNKNIPTTRSLIE 646

Query: 927  -------KTSFVYGTAE-YFVHDYVYISPHHFTW--DKAEGETFKAGRNV--GLKPYVVC 974
                   K  FV    E Y +   V++ P  F +     E E  K+  +V  G+ P    
Sbjct: 647  DKNSNQKKYRFVDWRGEVYSIGSCVFLHPETFKFKIQPVEKEKLKSKTDVDDGMYPEFYR 706

Query: 975  QLLEII------------------VPKEPKRAEVKSTQVKVRRFFRPDDISAEKA---YC 1013
            +  E I                  +  E  + E    ++KV +F+RP++    K      
Sbjct: 707  KTTENIKGCNEKTPGPFNIGYIREIYTETFKGE-DVIKLKVNKFYRPENTHLNKTRKDLF 765

Query: 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQ 1073
             D+  +Y+S E   I    + GKC VR   D    N      + F+ +  +D    +  +
Sbjct: 766  YDLNLLYWSTEEEKISFTDVEGKCYVRYLEDDNKDNWLKNGPNRFYFQESYDSESENFTE 825

Query: 1074 LPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGL 1133
              ++  +   S     +   ++ + +     DE  +E        + L TLD+FAGCGGL
Sbjct: 826  PKSYFSITGKSNKGKGKGKLKKTE-QISSKLDEENMEDIIWPEISDKLRTLDVFAGCGGL 884

Query: 1134 SEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVST 1193
            SEGL QSG+S T WAIE +  A  AFK N+P + +   +CN +L+ VM            
Sbjct: 885  SEGLHQSGVSKTLWAIEQDSDAASAFKQNNPNATVFTEDCNTLLKEVM------------ 932

Query: 1194 SEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS 1253
                  +  L  +    LP  G+VD I GGPPCQGFSGMNRFN   +S+ +  ++++FLS
Sbjct: 933  ------SGKLKNDKGQCLPQKGEVDLICGGPPCQGFSGMNRFNSRQYSQFKNSLVVSFLS 986

Query: 1254 FADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            + DYF+P+YF+LENVRNFV+F +    + TL  L+ MGYQ  FG+L+AG +G+ Q+R+R 
Sbjct: 987  YCDYFRPKYFILENVRNFVAFKRSMVLKQTLYCLISMGYQCTFGVLQAGNYGIPQTRRRL 1046

Query: 1314 FIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIG 1371
            FI AA+P+  LP +PEP HVF+  A  L++ + D  +++     +  AP R +TVRD + 
Sbjct: 1047 FILAAAPNLKLPLFPEPTHVFSLRASNLQVTVDDK-RFTTNCKWSTSAPLRTITVRDALS 1105

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA--VLTDHISKEMNELNLIRCQKIPKRP 1429
            DLP + NGA + +M Y  D  + FQ+ IRGN +  +L DH  K M+ L   R + IP   
Sbjct: 1106 DLPEIPNGADRVVMNYNEDCKTHFQRLIRGNQSQPILRDHTCKYMSPLVEARIRHIPTTK 1165

Query: 1430 GADWHDLPDEKVKLSTGQVV---------------------------------------- 1449
            G+DW DLP+  + LS G  +                                        
Sbjct: 1166 GSDWRDLPNISMTLSDGTTIKQLKYMHHDRKNGKSPQGYLRGVCACASGRRCDPLDRQYN 1225

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             LIPWCLP+TA RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VREC
Sbjct: 1226 TLIPWCLPHTANRHNHWSGLYGRLEWDGYFSTTVTNPEPMGKQGRVLHPEQTRVVSVREC 1285

Query: 1510 ARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            ARSQGFPDS+QF+G I  KHRQ+GNAVPP +A A+G ++++++
Sbjct: 1286 ARSQGFPDSFQFYGPIIEKHRQVGNAVPPPMARAIGLEIRKSI 1328



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 98/209 (46%), Gaps = 18/209 (8%)

Query: 110 RPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFGR 166
           RP+ +L  F + DE G     +   I+    L++SG I P+ +  +   E GV     G 
Sbjct: 132 RPSNKLTHFSVFDEYGHLCFFDSGLIEKNALLYVSGYIKPIYDE-NSSPEDGVPAHKLGP 190

Query: 167 IESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTS 225
           +  W I+G++ G + ++ +ST   DY  ++P+  Y+ Y +L  +K+     V + L  + 
Sbjct: 191 LSEWWITGFDGGENGLLGISTPYCDYYLMEPSPEYEPYMKLARQKSLLSKTVIEFLYDSP 250

Query: 226 GGNSDCSIDELLA-GVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
               +  ++ L A  V ++M+           +D ++   +F+ +Q+  +D  +KK+   
Sbjct: 251 NPTYEELLNRLQAVNVPKTMAQFD--------EDTLMRNAQFLIDQVTNMDTAAKKDSSA 302

Query: 285 FAELPVLVALKEESSKRENFVQVNAASLG 313
             +  +L+     +      ++++ A+LG
Sbjct: 303 DDDDQLLIT----TPAMRTIIRLSGATLG 327


>gi|24416628|dbj|BAC22505.1| cytosine methyltransferase [Marchantia paleacea subsp. diptera]
          Length = 284

 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/284 (77%), Positives = 242/284 (85%)

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
            Q  WSKVQCEMILAFLS+ADYF+PRYFLLENVRNFVSFNKGQTFRLT+ASLLEMGYQVRF
Sbjct: 1    QRVWSKVQCEMILAFLSYADYFRPRYFLLENVRNFVSFNKGQTFRLTMASLLEMGYQVRF 60

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
            G+L+AG FGVSQSRKRAFIWAA+P ++LP+WPE  HV A+ +L + L    QY+AVR   
Sbjct: 61   GVLQAGNFGVSQSRKRAFIWAAAPDESLPDWPEARHVSASSQLGVTLPGGGQYAAVRDAG 120

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
             GAPFRA+TVRDTI DLP V NGA      Y     SWFQ  IRG   VLTDHISKEMNE
Sbjct: 121  LGAPFRAITVRDTIADLPPVANGADTLKTVYTQPAESWFQMHIRGKTDVLTDHISKEMNE 180

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            LNLIRCQ+IPKRPGAD  DLP EK+KLSTGQ+VDLIPWCLPNTA RHNQWKGLFGRLDW+
Sbjct: 181  LNLIRCQRIPKRPGADCRDLPAEKIKLSTGQLVDLIPWCLPNTAARHNQWKGLFGRLDWD 240

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
            GNFPTSITDPQPMGKVGMCFHP Q+RI+TVRECARSQGFPDSY+
Sbjct: 241  GNFPTSITDPQPMGKVGMCFHPVQNRIVTVRECARSQGFPDSYK 284


>gi|23306230|emb|CAD43077.1| DNA methyltransferase 1a [Paracentrotus lividus]
          Length = 1461

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 286/802 (35%), Positives = 416/802 (51%), Gaps = 122/802 (15%)

Query: 844  RSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF-----FILPVD 898
            R  P       D  + D++D +  +E K  G    ++ +  Y PE   F      + P D
Sbjct: 670  RRCPNMAIQEADENDIDEMDNSSNKENKDDG--KTFFYQKWYDPELARFEDYEVLMAPYD 727

Query: 899  SMGLGVGSCHACGTKESEKEKETFKVHSK------------TSFVYGTAEYFVHDYVYIS 946
                   SC  C   E  +EKET +  +K            +S  Y   E+ + D VY+ 
Sbjct: 728  IPAHRFCSC--CLNNERAQEKETARPGAKLEDQDDSSKVLYSSCHYKGNEFQIGDGVYLL 785

Query: 947  PHHFTWD-------------------------KAEGETFKAGRNVGLKPYVVCQLLEIIV 981
            P  F+++                         +   E  K       +P+ V +++ I  
Sbjct: 786  PEAFSFNIKQKIVTKKPVSKKDVDEDLYPENYRKSSEYVKGSNLECPEPFRVGKIISIYT 845

Query: 982  PKEPKRAEVKSTQVKVRRFFRPDDISAEK--AYCSDIREVYYSEETHLIFVEAIAGKCEV 1039
             K        + +++V + +RP+D    +  AY +D+  +Y+SEE  +  +E + GKC V
Sbjct: 846  TKS-----SSTVRLRVNKMYRPEDTHKGRTAAYQADLNVLYWSEEEAVTELEVVQGKCSV 900

Query: 1040 RKKNDIPACNA--PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKK 1097
                D+        A   H F+    +D  +   +  P+    +  S  +  +   + K 
Sbjct: 901  VCAEDLNVSTTEYSAGGPHKFYFREAYDSERKCFEDPPS----KSRSTRMKGKGKGKGKG 956

Query: 1098 GKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGE 1157
                +   E E EK+   +  N L  LD+FAGCGGLSEG  Q+GI  + WAIE EEPA +
Sbjct: 957  KAKGKMAVEKEEEKESTETPFNKLKCLDVFAGCGGLSEGFHQAGICESSWAIEKEEPAAQ 1016

Query: 1158 AFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQV 1217
            A++LN+P S +  ++CN +LR VM+     E    T +               LP  G V
Sbjct: 1017 AYRLNNPGSTVFSDDCNELLRLVMQ----GEKTSRTGQ--------------KLPQKGDV 1058

Query: 1218 DFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            + + GGPPCQGFSGMNRFN   +SK +  +I ++LS+ DY++PR+FLLENVRNFVS+ K 
Sbjct: 1059 ELLCGGPPCQGFSGMNRFNSREYSKFKNSLISSYLSYCDYYRPRFFLLENVRNFVSYKKN 1118

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA-- 1335
               +L L  L+ MGYQ  FGIL+AG +GV Q+R+RA I AA+P + LP +PEP+HVF+  
Sbjct: 1119 MVLKLALRCLIRMGYQCTFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLHVFSTR 1178

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
            A  L +M+ +  +  +       AP+R +TVRD++ DLP + NGA K  + Y  +P S F
Sbjct: 1179 ACSLSVMIGEK-KIESNNQWCLSAPYRTITVRDSMSDLPTINNGAQKLEISYDGEPQSDF 1237

Query: 1396 QKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------- 1446
            QK+IRGN    +L+DHI K+M+ L   R + IP  PG+DW DLP+  V L  G       
Sbjct: 1238 QKKIRGNQYQPILSDHICKDMSSLVAARMKHIPLAPGSDWRDLPNIPVTLKDGTTCRKLR 1297

Query: 1447 ---------------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
                                             Q   LIPWCLP+T   HN W GL+GRL
Sbjct: 1298 YTHRDKKNGKSSTGALRGVCSCAEGDACDPSDRQFSTLIPWCLPHTGNWHNNWAGLYGRL 1357

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
            +W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F GSI  KHRQIG
Sbjct: 1358 EWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQIG 1417

Query: 1534 NAVPPTLAFALGRKLKEAVESK 1555
            NAVPP +A A+G ++K  +++K
Sbjct: 1418 NAVPPPMAAAIGMEIKVCLQTK 1439



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +R   ++ +F ++D++      +  M+E + +L+ SG + P+ +  +   E G+  +  G
Sbjct: 389 ERLQHKITNFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDD-NPSTEGGIPTKRIG 447

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G   +I  ST  A+Y  + P+  YK ++    EK    I + K L + 
Sbjct: 448 PINEWYTTGFDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEK----IYMSKILIEF 503

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++LL  V  ++    C R     +D ++   +F+  Q+   D+ + +++  
Sbjct: 504 LQNNVDPVYEDLLTQVETTVPPEGCNR---FTEDSLLRHAQFVVEQVESYDDAADRDEVL 560

Query: 285 FAELPVLVAL 294
              +P +  L
Sbjct: 561 LITMPCMRDL 570


>gi|3818628|gb|AAC69603.1| DNA methyltransferase [Danio rerio]
          Length = 700

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/643 (39%), Positives = 373/643 (58%), Gaps = 87/643 (13%)

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEE 1024
            +P+ + ++ EI   K     +  +T++K+R  +F+RP++     + AY SDI ++Y+S+E
Sbjct: 71   QPFRIGRIKEIFCNKR-SNGKPDTTEIKLRLYKFYRPENTHKGPKGAYHSDINQLYWSDE 129

Query: 1025 THLIFVEAIAGKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI 1078
               + +  +  +C V    D+       +   P  F   +F E  +  +K S +  P H 
Sbjct: 130  EATVSMTEVLTRCRVEYAEDLVESVQDYSNKGPDRF---YFLEAYNAKTK-SFEDPPNHA 185

Query: 1079 KLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQEN---HLATLDIFAGCGGLSE 1135
            +   + G    +   + K  +             G  +QE     L TLD+F+GCGGLSE
Sbjct: 186  RSAVNKGKGKGKGKGKGKGKQ--------RSRTTGSGAQEPVVPKLRTLDVFSGCGGLSE 237

Query: 1136 GLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSE 1195
            G  Q+GIS T WAIE  +PA +AF+LN+P + +   +CNV+L+ VM              
Sbjct: 238  GFHQAGISETHWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVM-------------- 283

Query: 1196 AAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFA 1255
            + E   SL +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  +++++LS+ 
Sbjct: 284  SGEKTNSLGQK----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSYLSYC 339

Query: 1256 DYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI 1315
            DY++PR+FLLENVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I
Sbjct: 340  DYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAII 399

Query: 1316 WAASPHDTLPEWPEPMHVFAAPELKIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLP 1374
             AA+P + LP +PEP+HVFA     + ++ D  +Y +  +  NG  +R +TVRDT+ DLP
Sbjct: 400  LAAAPGEKLPRYPEPLHVFAPRACSLSVAVDEKKYVSNVTRGNGGIYRTITVRDTMSDLP 459

Query: 1375 AVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGAD 1432
             + NGA+   + Y  +P SWFQ++IRG+    +L DHI K+M+ L   R + IP  PG+D
Sbjct: 460  EIRNGAAALEISYNGEPQSWFQRQIRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSD 519

Query: 1433 WHDLPDEKVKLSTG----------------------------------------QVVDLI 1452
            W DLP+ +V+L  G                                        Q   LI
Sbjct: 520  WRDLPNIEVRLRDGTTTKKLRYTHSDKKNGRSGTGALRGVCSCSEGKQCDPADRQFNTLI 579

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
            PWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARS
Sbjct: 580  PWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARS 639

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            QGFPD+Y+F G++  KHRQ+GNAVPP L+  +G ++K+ V  K
Sbjct: 640  QGFPDTYRFFGNVLDKHRQVGNAVPPPLSETIGLEVKKCVLEK 682


>gi|431918990|gb|ELK17857.1| DNA (cytosine-5)-methyltransferase 1 [Pteropus alecto]
          Length = 1535

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 307/910 (33%), Positives = 450/910 (49%), Gaps = 192/910 (21%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W GE V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 708  ISWIGEAVKTDGKKSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSIQGQ 767

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K TVV    S  W  +   D
Sbjct: 768  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVTVVYKAPSENWALEGGMD 827

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   +   AE+  K    T +Y   L++ +  A F  P ++          C +C  
Sbjct: 828  ------PEALMAEDDGK----TYFY--QLWYDQDYARFESPPNTQPTEDNKYKFCVSCAR 875

Query: 913  KESEKEKETFKVHSKTS-----FVYGTA-----EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +        +Y +A     +Y V D VY+ P  FT++       K 
Sbjct: 876  LAEVRQKEFPRVMEQLEDLDGRVLYSSATKDGVQYRVGDGVYLLPEAFTFNIKLSSPVKR 935

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
             R   +                        +PY + ++ EI   K+    +   T VK+R
Sbjct: 936  PRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCVKK-SNGKPNETDVKIR 994

Query: 999  --RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------ 1048
              +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C      
Sbjct: 995  LNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECLQDFSA 1054

Query: 1049 NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELE 1108
              P  F   +F E  +  SK S +  P H +   + G    +   + K   C   E E E
Sbjct: 1055 GGPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKAKSQTCEPSEPETE 1110

Query: 1109 VEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLM 1168
            +       Q   L TLD+F+GCGGLSEG  Q+G                           
Sbjct: 1111 I-------QLPKLRTLDVFSGCGGLSEGFHQAG--------------------------- 1136

Query: 1169 LINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
                    L+ VM              A E+  S  +     LP  G V+ + GGPPCQG
Sbjct: 1137 --------LQLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQG 1170

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
            FSGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+
Sbjct: 1171 FSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLV 1230

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQ 1348
             MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HV ++            
Sbjct: 1231 RMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVLSS------------ 1278

Query: 1349 YSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVL 1406
                       PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +L
Sbjct: 1279 ----------GPFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQLRGSQYQPIL 1328

Query: 1407 TDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG-------------------- 1446
             DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G                    
Sbjct: 1329 RDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTYHDKKNGCSST 1388

Query: 1447 ---------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
                                 Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+
Sbjct: 1389 GALRGVCSCVEASKACDSTARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTN 1448

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G
Sbjct: 1449 PEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG 1508

Query: 1546 RKLKEAVESK 1555
             ++K  + +K
Sbjct: 1509 LEIKRCMLAK 1518



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 111 PNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFGRI 167
           P  +L  F ++ + G   P++   I+   +LF SG   P+ +  D   E GV  +  G I
Sbjct: 381 PQHKLTCFSVYCKRGHLCPIDTGLIEKNVELFFSGSAKPIYDD-DPSLEGGVNGKNLGPI 439

Query: 168 ESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSG 226
             W I+G++ G   +I  ST  A+Y  + P   Y   + +  EK    I + K + +   
Sbjct: 440 NEWWITGFDGGEKALIGFSTSFAEYILMDPNPEYAPMFSVMQEK----IYISKIVVEFLQ 495

Query: 227 GNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFA 286
            N D + ++L+  +  ++  S         +D ++   +F+  Q+   DE    ++Q   
Sbjct: 496 SNPDSTYEDLINKIETTVPPS-VLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIF 554

Query: 287 ELPVLVAL 294
             P +  L
Sbjct: 555 LTPCMRDL 562


>gi|332023953|gb|EGI64171.1| DNA (cytosine-5)-methyltransferase PliMCI [Acromyrmex echinatior]
          Length = 1449

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 362/1293 (27%), Positives = 597/1293 (46%), Gaps = 246/1293 (19%)

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKM--ISDEGSGFCLDTDS 474
            D+ P+  L  +S+Y+ +  L   +   +    D +V ++ SG M  I +E S        
Sbjct: 196  DERPQNKLTHFSVYDMNGHLCPFDTGLV----DNNVLLYFSGYMKPIYEENSS------- 244

Query: 475  SQCTSGVSGAQDAGGFPIY-LSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAP 531
                         GG P   +  I EW +    G  +  +   T  A Y L +PS+ YAP
Sbjct: 245  -----------PEGGIPTKDMGPINEWYVTGFDGGELALVGFGTAFAEYILMEPSETYAP 293

Query: 532  WYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVV 591
            + + V +   ++  +I  L ++   +   + D++ +L  +   + +   +     E  ++
Sbjct: 294  FMDAVKEKIYMSKLVIEFLLDEINST---YEDLLNKLQTVVPPKETITFT-----EDTLL 345

Query: 592  VHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKV---QKSEINLNPRA 648
             H Q + +    +      KCA     +  +      + L+K   V   +KS + L  RA
Sbjct: 346  RHAQFICERVVSF-----DKCAGAEDTL--LITAPCMRSLMKLSGVTLGKKSVVRLTKRA 398

Query: 649  SMGPVVVSKRKVMQATTTRLINRIWGEYYSN-----------------------YSPE-- 683
               P V +    M ATTT+L+N ++   ++                          P+  
Sbjct: 399  ---PKVKTPGWSM-ATTTKLVNNMFENIFAGQLAKHNNNNKLLKRTRCRACENCLQPDCG 454

Query: 684  -------------DGKEETAC-----------EANEDEEVEEQGENEEDDTEEEKLISEE 719
                          G ++ AC           EAN+ +E + + E + +   E++++ E 
Sbjct: 455  SCPACKDMTKFGGKGIQKQACIRRRCPNLAIQEANDSDEEQYENEEQYESLAEDQMVQES 514

Query: 720  RQISCSVAVQIKSRSTKKEITWEGEC-VRKSGLALYKKAIVHGEVVSLGSAVLVEVDELD 778
            +            +  KK+I WE E  +  +    YK   V  E + +   VL+E  +  
Sbjct: 515  KNED--------FKELKKDIVWEEENKIVDAQKTYYKSVTVGNEKIEINDYVLLEPRDPT 566

Query: 779  QLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQT 838
                I  V +M+E   G K FH   ++RG+ T+LG T++  E+FL++QC +   + ++  
Sbjct: 567  IPLQICKVMFMWETKNGEKRFHANRLRRGTDTILGETSDPIELFLSDQCCEASFKSVRSK 626

Query: 839  VVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVD 898
              V  + +P   ++  ++ N D  +  +  + K       ++ K  Y P+   F   P D
Sbjct: 627  ATVIHQKMP---ENWSELGNMDTDNYIKDTDGKT------FFYKLKYDPDSARFEAPPPD 677

Query: 899  SMGLGVGS----CHAC------GTKESEKEKETFKVHSKTSFVYGTA-----EYFVHDYV 943
                G       C +C        ++  K     +V S    +Y        EY V + V
Sbjct: 678  PECPGKQISHRFCPSCIRLAILTQQDIPKVYNQIEVKSNKEVIYELVKHKGEEYKVGNAV 737

Query: 944  YISPHHFTWDKAEGETFKAGRNVGL---------------------------KPYVVCQL 976
            ++ P+ F ++      ++  +N  +                           +PY +  +
Sbjct: 738  FLYPNAFMFE--HKRKYQESKNSKMSYVDEDTYPEFYRKVDDKSSFSNVDTPEPYHIGYI 795

Query: 977  LEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC--SDIREVYYSEETHLIFVEAIA 1034
              I               +KV + +RP++   + A    SD+  +Y+S E   +    +A
Sbjct: 796  NTIYATTTDILVAPTDIFIKVNKMYRPENTHRDIALMEQSDVNMIYWSNEICTVNFSVVA 855

Query: 1035 GKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI-----KLRYS 1083
            GKC +    ++       + + P  F   +F E  ++P + +  + P  I       +  
Sbjct: 856  GKCYLAYFKNMSESIEEWSMSGPNRF---YFTE-AYNPKEKTFDEPPYDIINTSKSGKGK 911

Query: 1084 SGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGIS 1143
                 ++   R +K + IE            ++    L  LDIFAGCGGLSEG+ Q+G++
Sbjct: 912  GKCKSTKKVERTEKKQVIETPINY-------STIPRKLRMLDIFAGCGGLSEGMHQAGVA 964

Query: 1144 STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASL 1203
             + WAIE E  A  A++LN+P++++   +CN +L+ VM+  GD  D              
Sbjct: 965  ESLWAIEKESSAANAYRLNNPKTMVFSEDCNKLLQRVMD--GDRVD-------------- 1008

Query: 1204 DENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYF 1263
              N    LP  G V+ + GGPPCQGFSGMNRFN   +S  +  +I+ FLS+ DY++P++F
Sbjct: 1009 --NNGQKLPQKGDVELLCGGPPCQGFSGMNRFNLRQYSLFKNSLIVTFLSYCDYYRPKFF 1066

Query: 1264 LLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT 1323
            ++ENVRNFV   K    +LTL  L+ MGYQ  FGIL+AG++GV Q+R+R  + AA+P + 
Sbjct: 1067 VMENVRNFVFCKKSMVLKLTLRCLIRMGYQCTFGILQAGSYGVPQTRRRMILLAAAPGEI 1126

Query: 1324 LPEWPEPMHVFAAPELKI-MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASK 1382
            LP++P P HVF+     + ++ D+ +Y         AP+RA+TV+D + DLP +  G++ 
Sbjct: 1127 LPKFPIPTHVFSKRCCSLAVIVDSKRYITNCVQKESAPYRAITVKDALYDLPEIKCGSNI 1186

Query: 1383 TIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440
              M Y  +P++ FQ+++RG    + LTDHI KEM+ L   R   IP   G+DW DLP+  
Sbjct: 1187 EEMSYVGEPITHFQRKMRGKPYQSKLTDHICKEMSPLVEARMSYIPTTNGSDWRDLPNIV 1246

Query: 1441 VKLSTG---------------------------------QVVD--------LIPWCLPNT 1459
            V+LS G                                 Q+ D        LIPWCLP+T
Sbjct: 1247 VQLSDGTYTKKLDYMYNDKRVGRSKTNAFRGVCRCSIRKQLCDPTDKQFNTLIPWCLPHT 1306

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
            A RHN WKGL+GR++W G F T+IT+P+PMGK G   HP Q+R+++VRECARSQGF DSY
Sbjct: 1307 ASRHNNWKGLYGRIEWSGFFSTTITNPEPMGKQGRVLHPVQNRVVSVRECARSQGFLDSY 1366

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            +F G+I  KHRQ+GNAVPP LA A+G ++++ +
Sbjct: 1367 RFFGTITDKHRQVGNAVPPPLAAAIGHEIRKCI 1399



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 12/193 (6%)

Query: 106 QDGDRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCE 162
           Q  +RP  +L  F ++D NG   P +   +D+   L+ SG + P+ E  +   E G+  +
Sbjct: 194 QSDERPQNKLTHFSVYDMNGHLCPFDTGLVDNNVLLYFSGYMKPIYEE-NSSPEGGIPTK 252

Query: 163 GFGRIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKL 221
             G I  W ++G++ G   ++   T  A+Y  ++P+ +Y  + +   EK    I + K +
Sbjct: 253 DMGPINEWYVTGFDGGELALVGFGTAFAEYILMEPSETYAPFMDAVKEK----IYMSKLV 308

Query: 222 SKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKN 281
            +      + + ++LL  +   +   +        +D ++   +FI  +++  D+ +   
Sbjct: 309 IEFLLDEINSTYEDLLNKLQTVVPPKETI---TFTEDTLLRHAQFICERVVSFDKCAGAE 365

Query: 282 DQKFAELPVLVAL 294
           D      P + +L
Sbjct: 366 DTLLITAPCMRSL 378


>gi|20137608|sp|Q9Z330.2|DNMT1_RAT RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            AltName: Full=DNA MTase RnoIP; Short=M.RnoIP; AltName:
            Full=DNA methyltransferase I; AltName: Full=MCMT
          Length = 1622

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 307/915 (33%), Positives = 461/915 (50%), Gaps = 148/915 (16%)

Query: 735  TKKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+ +     Y K  +  E + +G  V V  D+  +   +  V  ++E  
Sbjct: 731  NKDRISWLGEPVKIEENRTYYWKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDK 790

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQ 851
             G ++FH      G+ TVLG T++  E+FL  +C +++L  I   V V  R  S  W  +
Sbjct: 791  NG-QMFHAHWFCAGTDTVLGATSDPLELFLVGECENMQLSYIHSKVKVIYRGPSPNWAME 849

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     +     AE+ K     T +Y    ++ +  A F  P  +          C 
Sbjct: 850  GGMD----PEAMLPGAEDGK-----TYFY--QFWYSQDYARFESPPKTQPAEDNKHKFCL 898

Query: 909  ACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGE 958
            +C      ++KE  KV  +          +S       Y + D VY+ P  FT++     
Sbjct: 899  SCIRLAELRQKEMPKVLEQLEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKMAS 958

Query: 959  TFK------------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKST 993
              K                         G N+   +PY + ++ EI   K+ K  +V   
Sbjct: 959  PMKRSKRDPVNENPVPRDTYRKYSDYIKGSNLDAPEPYRIGRIKEIYCGKK-KGGKVNEA 1017

Query: 994  QVKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP--- 1046
             +K+R  +F+RP++   S +  Y +DI  +Y+S+E  ++    + G+C V    D+    
Sbjct: 1018 DIKIRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTVEYGEDLLESI 1077

Query: 1047 ---ACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEG 1103
               +   P  F   +F E  +  +K S +  P H +   + G    +   + K       
Sbjct: 1078 QDYSQGGPDRF---YFLEAYNSKTK-SFEDPPNHARSPGNKGKGKGKGKGKGKPQVSEPK 1133

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            E E        A +   L TLD+F+GCGGL+EG  Q+GIS T WAIE  EPA +AF+LN+
Sbjct: 1134 EPE-------AAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNN 1186

Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
            P + +   +CNV+L+ VM              A E+  SL +     LP  G V+ + GG
Sbjct: 1187 PGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR----LPQKGDVEMLCGG 1228

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LT
Sbjct: 1229 PPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLT 1288

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKI 1341
            L  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +
Sbjct: 1289 LRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSV 1348

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
            ++ D    S +   ++G PFR +T+RDT+ DLP + NGAS   + Y+     W    +  
Sbjct: 1349 VVDDKKFVSNITRLSSG-PFRTITMRDTMSDLPEIQNGASAPEISYK-----WRATVLVP 1402

Query: 1402 NMA---VLTDHISKEMNELNL----IRCQKIPKRPGADWHDLPDEKVKLSTGQVVD---- 1450
              A    L  H      +++      R + IP  PG+DW DLP+ +V+L  G + +    
Sbjct: 1403 EAAARVALPAHPQGPYPQVHERAGGCRMRHIPLSPGSDWRDLPNIQVRLRDGVITNKLRY 1462

Query: 1451 ------------------------------------LIPWCLPNTAKRHNQWKGLFGRLD 1474
                                                LIPWCLP+T  RHN W GL+GRL+
Sbjct: 1463 TFHDTKNGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPHTGNRHNHWAGLYGRLE 1522

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  +HRQ+GN
Sbjct: 1523 WDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDRHRQVGN 1582

Query: 1535 AVPPTLAFALGRKLK 1549
            AVPP LA A+G ++K
Sbjct: 1583 AVPPPLAKAIGLEIK 1597



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 137 DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLK 195
           +L+ SG+   + E +    E GV  +  G I  W ISG++ G   +I  ST  A+Y  ++
Sbjct: 438 ELYFSGVAKAIHEENP-SVEGGVNGKNLGPINQWWISGFDGGEKALIGFSTAFAEYFLME 496

Query: 196 PASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVS 255
           P+  Y   + L  EK    I + K + +    N D   ++L+  +  ++  S        
Sbjct: 497 PSPEYAPIFGLMQEK----IYISKIVVEFLQSNPDAVYEDLINKIETTVPPS-AINVNRF 551

Query: 256 IKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            +D ++   +F+ +Q+   D+    ++      P + +L
Sbjct: 552 TEDSLLRHAQFVVSQVESYDDAKDDDETPIFLSPCMRSL 590


>gi|193783730|dbj|BAG53712.1| unnamed protein product [Homo sapiens]
          Length = 540

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/544 (43%), Positives = 329/544 (60%), Gaps = 72/544 (13%)

Query: 1057 IFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGAS 1116
             +F E  +  SK S +  P H +   + G    +   + K   C   E E+E++      
Sbjct: 7    FYFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLP---- 61

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
                L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S +   +CN++
Sbjct: 62   ---KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNIL 118

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
            L+ VM              A E   S  +     LP  G V+ + GGPPCQGFSGMNRFN
Sbjct: 119  LKLVM--------------AGETTNSRGQR----LPQKGDVEMLCGGPPCQGFSGMNRFN 160

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
              T+SK +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ MGYQ  F
Sbjct: 161  SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTF 220

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRS 1354
            G+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D    S +  
Sbjct: 221  GVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITR 280

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISK 1412
             ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG     +L DHI K
Sbjct: 281  LSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICK 339

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG-------------------------- 1446
            +M+ L   R + IP  PG+DW DLP+ +V+LS G                          
Sbjct: 340  DMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGV 399

Query: 1447 ---------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
                           Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK
Sbjct: 400  CSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGK 459

Query: 1492 VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++K  
Sbjct: 460  QGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLC 519

Query: 1552 VESK 1555
            + +K
Sbjct: 520  MLAK 523


>gi|432099546|gb|ELK28687.1| DNA (cytosine-5)-methyltransferase 1 [Myotis davidii]
          Length = 1604

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 302/918 (32%), Positives = 443/918 (48%), Gaps = 166/918 (18%)

Query: 735  TKKEITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEAT 793
             K  I+W GE V+  G    YKK  +  E + +G  V V  D+  +   +  V  ++E +
Sbjct: 728  NKDRISWIGEAVKTDGKKTYYKKVCIDSETLKVGDCVSVIPDDSSKPLYLARVTALWEDS 787

Query: 794  GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQ 851
                +FH      G+ TVLG T++  E+FL ++C D++L  I  K TVV    S  W  +
Sbjct: 788  SQGPMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVTVVYKAPSENWAME 847

Query: 852  HRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CH 908
               D     + D  +             Y   L++ +  A F  P  +          C 
Sbjct: 848  GGMDPETLMEEDNGKT------------YFYQLWYDQDYARFESPPKTEPTEDNKYKFCA 895

Query: 909  ACGTKESEKEKETFKVHS-----KTSFVYGTA-----EYFVHDYVYISPHHFTWDKAEGE 958
            +C      K+KE  +        +    Y +A     +Y V D VY+ P  FT++     
Sbjct: 896  SCAHLVEMKQKEIPRALELLEDLEDRVFYSSASKDGIQYRVGDGVYLLPEAFTFNIKLSS 955

Query: 959  TFKAGRNVGL------------------------KPYVVCQLLEIIVPKEPKRAEVKSTQ 994
              K  R   +                        +PY + ++ EI   K+    +   T 
Sbjct: 956  PMKRPRKEPVNEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIREIFCVKK-NNGKPNETD 1014

Query: 995  VKVR--RFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC-- 1048
            +K+R  +F+RP++   S   ++ +DI  +Y+S+E  ++    + G+C V    D+P C  
Sbjct: 1015 IKIRLNKFYRPENTHKSTPASHHTDINLLYWSDEEAVVDFSDVQGRCTVEYGEDLPGCLQ 1074

Query: 1049 ----NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104
                  P  F   +F E  +  +K S +  P H +   + G    +   R K       E
Sbjct: 1075 DFSTGGPDRF---YFLEAYNAKNK-SFEDPPNHARSPGNKGKGKGKGKGRPKSQTSEPKE 1130

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             ++++       Q   L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P
Sbjct: 1131 PKVDI-------QLPKLRTLDVFSGCGGLSEGFHQAGISQTLWAIEMWDPAAQAFRLNNP 1183

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             S +L                            E+  SL +     LP  G V+ + GGP
Sbjct: 1184 GSTVL----------------------------EVTNSLGQK----LPQKGDVEMLCGGP 1211

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL
Sbjct: 1212 PCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTL 1271

Query: 1285 ASLLEMGYQVRFGIL-----EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
              L+ MGYQ  FG+L     EA    V  +  R    ++    T+  W   + V  +  L
Sbjct: 1272 RCLVRMGYQCTFGVLQGDGCEAAPTPVKPAAFREGSASSQEMATVIRWTAAVCVPRSAML 1331

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
               LS               PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++
Sbjct: 1332 YCRLS-------------SCPFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQL 1378

Query: 1400 RGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------- 1446
            RG+    +L DHI K+M+ L   R + +P  PG+DW DLP+ +V+LS G           
Sbjct: 1379 RGSQYQPILRDHICKDMSALVAARMRNVPLAPGSDWRDLPNIEVRLSDGTMTRKLRYTYH 1438

Query: 1447 -----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                                         Q   LIPWCLP+T  RHN W GL+GRL+W+G
Sbjct: 1439 DRKNGCSSTGALRGVCSCASGKACDSTARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDG 1498

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
             F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVP
Sbjct: 1499 FFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVP 1558

Query: 1538 PTLAFALGRKLKEAVESK 1555
            P LA A+G ++K  + +K
Sbjct: 1559 PPLAKAIGLEIKRCMLAK 1576



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 38/297 (12%)

Query: 10  KESNDQKATDSSEMKNKKRKPKSEVPETKD--------STSGQKEKMKKLSQDSEEPR-K 60
           K+S D    D  E + K+R+  S+ P+ K         S   Q +K  +  Q  ++P  K
Sbjct: 310 KDSQDSDGKDEDEKEEKRRRSTSKDPDEKKVAQAKTVLSPKNQLQKCLQCGQYLDDPELK 369

Query: 61  RPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQDGDRPNRRLNDFIL 120
               +    D  E  +  +E+  + +A +  +   E              P  RL  F +
Sbjct: 370 YEHHLPNAVD--EVPMLTNERLSIFDANESGFESYEYF------------PQNRLTCFSV 415

Query: 121 HDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYED 177
           + ++G   P++  ++E D  L+ SG   P+ +  D   E GV  +  G I  W I+G++ 
Sbjct: 416 YCKHGHLCPIDTGLIEKDIKLYFSGSAKPIYD-DDPSPEGGVNGKNLGPITEWWITGFDG 474

Query: 178 G-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDEL 236
           G   +I  ST  A+Y  ++P+  Y   + L  EK    I + K + +    N D + ++L
Sbjct: 475 GEKALIGFSTAYAEYILMEPSPEYSPMFSLMQEK----IYISKIVVEFLQNNRDATYEDL 530

Query: 237 LAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVA 293
           +  +  ++  S       + +D ++   +F+  Q+   D     +     ELP+ + 
Sbjct: 531 INKIETTVPPSTLNLNRFT-EDSLLRHAQFVVEQVESYDAAGDSD-----ELPIFLT 581


>gi|328708218|ref|XP_003243626.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Acyrthosiphon
            pisum]
          Length = 1227

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 361/1266 (28%), Positives = 569/1266 (44%), Gaps = 257/1266 (20%)

Query: 415  DIDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSG--KMISDEGSGFCLDT 472
            D D + +  L ++S+Y+ +  + S++   M    + +VTI+ +G  K I D         
Sbjct: 85   DNDDVVQHNLTNYSIYDENGHMCSIDSGVM----ERNVTIYMTGYVKPIYD--------- 131

Query: 473  DSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYA 530
            +S     G++  +        L  I EW +    G +   I I T+ A Y L +P  +Y 
Sbjct: 132  NSPSIEDGIAARE--------LGPILEWWLSSYDGGTQALIGINTEYADYLLIEPHPKYK 183

Query: 531  PWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSY--------ISSD 582
             +              +T + E+  +SR    +VIK +   + D  +Y         S +
Sbjct: 184  KY--------------MTSVTEKIHLSR----EVIKNILSSEYDDPTYEDILNCIINSVN 225

Query: 583  PAAVERY----VVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQ 638
            PA   ++    ++ H Q VL    EY         + + L +       T+     K V+
Sbjct: 226  PATGNKFTEEDLISHAQFVLNQVLEYDLND----TYHLPLAETQCIETLTQLSGAAKPVK 281

Query: 639  KSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEE 698
                    R       ++KR+  +ATTT L+  ++   ++     D KE    E N ++ 
Sbjct: 282  ALSRRAGQRTQYVKTDINKREFSKATTTELVKDVFENMFAAQLDIDDKEN---EGNMNKL 338

Query: 699  VEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLALYKKAI 758
            V+       DD    K+  E   I          R    ++ W+ + + +    + K   
Sbjct: 339  VKTMF----DDVCNTKIKKEISDI----------RVNANQVLWKDKVLCEKMFVVVK--- 381

Query: 759  VHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANE 818
                            + +  +P+I  +EY F+ T    + H  +      TVLG TA+ 
Sbjct: 382  ----------------NNVSTIPLIGCIEYFFK-TKFKNMAHIQLFMHSYETVLGETADP 424

Query: 819  REVFLANQCRDLELQDIKQT--VVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLP 876
            +E+F    C +++++++ +   VV  I S  W       + N+   D      RK K   
Sbjct: 425  QEIFSLKNCTNIDIKNVVRVLDVVQKIPSKNWFQ-----LGNSKLQDLLEPVNRKNKN-- 477

Query: 877  TEYYCKSLYWPERGAF-FILPVD-SMGLGVGSCHAC---GTKESEKEKETFKV---HSKT 928
              ++ +  Y  + G F +  P++ +  +  G C  C     ++  KE E ++        
Sbjct: 478  -SFFYQLQYDDKFGRFEYPKPLEPNTVITEGYCSNCEDFDLEQKSKEPELYEFIEQDKNI 536

Query: 929  SFVYG----TAEYFVHDYVYISPHHFT--------------------------------- 951
            S+ Y       EY V  ++Y+ P  F                                  
Sbjct: 537  SYFYKFKLFDEEYKVGSFIYLQPEIFKTASRSNMIGEEPFELKKTSKNISNQEQKVIDET 596

Query: 952  -----WDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDI 1006
                 + K+   T +        P+ + ++L I      +    K+ ++ VRR +R + I
Sbjct: 597  KYPEYYRKSLENTMRGSNETTPDPFEIAEILAIYFVDWDR----KNIKLIVRRMYRAEQI 652

Query: 1007 SAEK-AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHD 1065
              E  A  SD+  +++SEE   +  + I GKC                  ++ F  ++ D
Sbjct: 653  PIEDYAKNSDMNMLFWSEEEFRVTYQNIRGKC------------------YVSFISNIQD 694

Query: 1066 P---SKGSLKQLPAHIKLRYSSGSLDSE---AASRRKKGKCI------EGEDELEVEKQG 1113
            P   S G   +     K  +  GS+ SE    +  +  GK +      +  DE +++   
Sbjct: 695  PLLWSSGGPDRFYFTKKYDFIFGSIVSEHELPSEAKLTGKEVYVNYKYQYVDENKLQYIP 754

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
               +   L  LDIFAGCGGLS GL+ SG+  + WAIE ++ A  AFKLN+PE+ + + +C
Sbjct: 755  SYKKIKPLRGLDIFAGCGGLSRGLEDSGLVISNWAIECDDKAAGAFKLNNPEATVFVEDC 814

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            N +L+  M              A E + S ++N+    P  G+VDFI GGPPCQGFSGMN
Sbjct: 815  NHLLKLAM--------------AGEKSNSKNQNI----PQKGEVDFICGGPPCQGFSGMN 856

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFN   +S  +  +I++FLS+ D+++P+YF++ENVRNFVSF +    +LTL  +  MGYQ
Sbjct: 857  RFNSGQYSLFKNSLIVSFLSYIDFYRPKYFVMENVRNFVSFKRSMVLKLTLRCITRMGYQ 916

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF--AAPELKIMLSDNYQYSA 1351
              FGIL+AG FGV Q+R+R  I AA+P + LP +PEP++VF   +  L + + D  ++  
Sbjct: 917  CTFGILQAGNFGVPQTRRRLIIMAAAPGEKLPFYPEPINVFNRKSSSLSVQVGDE-KFKT 975

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR--GNM---AVL 1406
                 N AP R +TV D   DLP + NGA +  + Y + P++  QK +R   N    + L
Sbjct: 976  NCKYVNSAPLRTLTVYDAWSDLPGISNGAYQERIPYNSTPITHLQKLLRYPDNQYADSTL 1035

Query: 1407 TDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG-------------------- 1446
             DHI KEM+ L   R   IP   G+DW DLP+  V+L  G                    
Sbjct: 1036 CDHICKEMSSLVQARMALIPVCEGSDWRDLPNITVQLPEGLKTNTLLYTHHDIKNGYGPN 1095

Query: 1447 --------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDP 1486
                                Q   +IPWCLP+T  RHN W GL+GRL W G   T+IT+P
Sbjct: 1096 GALRGVCTCASGDKCDPQDRQNNTIIPWCLPHTGNRHNNWAGLYGRLAWSGFCSTTITNP 1155

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGR 1546
            +PMGK G   HP+Q R+++VRECARSQGF DS+ F GSI  KHRQIGNAVPP +  A+G 
Sbjct: 1156 EPMGKQGRVLHPEQHRVVSVRECARSQGFKDSFIFCGSIFDKHRQIGNAVPPPMGTAIGH 1215

Query: 1547 KLKEAV 1552
             + +A+
Sbjct: 1216 AIIKAI 1221



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 22/190 (11%)

Query: 95  DEIVAVGLTARQDGDRPNRRLNDFILHDENGLPQPLEMLEIDD--------LFISGLILP 146
           +E++A   T   D  + N  L ++ ++DENG      M  ID         ++++G + P
Sbjct: 76  NEVLANIYTDNDDVVQHN--LTNYSIYDENG-----HMCSIDSGVMERNVTIYMTGYVKP 128

Query: 147 LQESSDREKEKGVRCEGFGRIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYE 205
           + ++S    E G+     G I  W +S Y+ G+  +I ++T+ ADY  ++P   YKKY  
Sbjct: 129 IYDNSP-SIEDGIAARELGPILEWWLSSYDGGTQALIGINTEYADYLLIEPHPKYKKYMT 187

Query: 206 LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGE 265
              EK     EV K +   S    D + +++L  ++ S++ +    G    ++ +IS  +
Sbjct: 188 SVTEKIHLSREVIKNI--LSSEYDDPTYEDILNCIINSVNPAT---GNKFTEEDLISHAQ 242

Query: 266 FIFNQLIGLD 275
           F+ NQ++  D
Sbjct: 243 FVLNQVLEYD 252


>gi|112983430|ref|NP_001036980.1| DNA cytosine-5 methyltransferase [Bombyx mori]
 gi|54888739|dbj|BAD67189.1| DNA cytosine-5 methyltransferase [Bombyx mori]
          Length = 1409

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/642 (38%), Positives = 345/642 (53%), Gaps = 80/642 (12%)

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLI 1028
            +P+ V  +  +    E      +   +KV    RP++ S++     D   +Y++ E   I
Sbjct: 795  EPFCVGYIAAVTAASEGPLVVPQDIYLKVNVLLRPENTSSKFPQHEDTNVLYWTTEIREI 854

Query: 1029 FVEAIAGKCEVRKKNDIPA--------CNAPAIFQ-HIFFCEHLHDPSKGSLKQLPAHIK 1079
                + G C +  + ++P          N P  F   + +C+     S G    LP +  
Sbjct: 855  PFSTVVGHCHLIYEQNVPQNISLQEWLGNDPCRFYFRMAYCK-----STGEFTDLPQNAI 909

Query: 1080 LRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQ 1139
                +     +   + K  K IE      VE++        L TLD+FAGCGGLSEGL Q
Sbjct: 910  SVGRTDRTKDKGKGKGKSTKTIETVPAKVVEEKIRP-----LRTLDVFAGCGGLSEGLHQ 964

Query: 1140 SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199
            +G++  KWAIE  E A  A+ LN+   ++   +CN +L+ VM            S A   
Sbjct: 965  AGVAECKWAIENVEAASHAYSLNNKSCIVFNEDCNALLKTVM------------SGAKHS 1012

Query: 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQ 1259
            A  L       LP+ G+V+ + GGPPCQGFSGMNRFN   +S  +  ++ ++LSF DY++
Sbjct: 1013 ANGL------RLPMQGEVELLCGGPPCQGFSGMNRFNSREYSNFKNSLVASYLSFCDYYR 1066

Query: 1260 PRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS 1319
            P+YF+LENVRNFV+F KG   +LTL +LL+MGYQ  FGIL+AG +GV Q+R+R  I AA+
Sbjct: 1067 PKYFILENVRNFVAFKKGMVLKLTLRALLDMGYQCTFGILQAGNYGVPQTRRRLIILAAA 1126

Query: 1320 PHDTLPEWPEPMHVFAAPELKIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN 1378
            P   LP +PEP HVF+     +  + D  ++S        AP R  T++D + DLP + N
Sbjct: 1127 PGYNLPFYPEPTHVFSRRACTLTTTIDGKRFSTNIHWDESAPKRTCTIQDAMSDLPQICN 1186

Query: 1379 GASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436
            GA+K  +EY + P S FQ+ +R N   + L DHI K M  L   R  +IP  PG+DW DL
Sbjct: 1187 GANKIEIEYGSMPESHFQRLVRSNDENSKLRDHICKNMAPLIQARISRIPTTPGSDWRDL 1246

Query: 1437 PDEKVKLSTG----------------------------------------QVVDLIPWCL 1456
            P+  V LS G                                        Q   LIPWCL
Sbjct: 1247 PNISVTLSDGTKCKVLQYRYDDKRNGRSSSGAVRGVCACASGRACSPLDKQENTLIPWCL 1306

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
            P+T  RHN W GL+GRL W G F T++TDP+PMGK G   HPDQ R+++VRECARSQGFP
Sbjct: 1307 PHTGNRHNHWAGLYGRLSWGGYFSTTVTDPEPMGKQGRVLHPDQHRVVSVRECARSQGFP 1366

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            D+Y F GS+Q KHRQIGNAVPP L  ALGR++K+A+    +T
Sbjct: 1367 DTYLFAGSVQDKHRQIGNAVPPPLGAALGREIKKALTLSLTT 1408



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 173/422 (40%), Gaps = 75/422 (17%)

Query: 451 DVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSM 508
           DV I+ SG + S       + +DSS+        +D G        I EW I    G   
Sbjct: 224 DVRIYMSGYLKS-------ICSDSSEIDEESIPVKDVG-------PIIEWFIHGFDGGDR 269

Query: 509 IFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRL 568
             I++ T+   Y L KPS+ Y P    + +   ++  ++  L+E   + + S+ D++   
Sbjct: 270 NCITLSTEFGEYNLLKPSEAYTPLMNNLYEKIWLSKVVVEFLEEYHYL-QPSYEDLL--- 325

Query: 569 SEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHT 628
            E+ +D      ++    E  +  H Q V         E+  +    +  M+++ +    
Sbjct: 326 -EVVRDFSIPELNNKKMTEEMLHKHAQFVCDQVVSLEIEEDDEPLITLPCMRELIKLMGI 384

Query: 629 KWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPE----- 683
           K+   K+K+         R  +      K+   +ATTT L+ + +  ++SN   +     
Sbjct: 385 KF--GKRKI---------RTQIQYKKTDKKAWTKATTTPLVRKTFESFFSNQLDKTNHEL 433

Query: 684 ----------------DGKEETACEANE------------------DEEVEEQGENEEDD 709
                           D  E  AC A                    +  VE+  +++ DD
Sbjct: 434 VLRRKRCGVCEACQLPDCGECNACRAMAKFGGHGRTKKACVRRLCPNMAVEQAEDSDPDD 493

Query: 710 TEEEKLISEERQISCSVAVQIK-SRSTKKEITWEGECVRKSGLALY-KKAIVHGEVVSLG 767
            +E + ISE++Q     AV +K + S  K + W GE V+     +Y +K  + G  +  G
Sbjct: 494 EDEYQQISEKKQDKIDDAVPVKLTGSNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNG 553

Query: 768 SAVLVEVDELDQLPVIYFVEYMFEATGGCK--LFHGIIMQRGSHTVLGNTANEREVFLAN 825
             V++E  + +   ++  V YM++     K   FHG +  R S TVLG  ++ REVFL +
Sbjct: 554 DFVMIETSQTNIPTLVAKVVYMWKEIHNPKSGYFHGEVFIRASDTVLGEVSDPREVFLGD 613

Query: 826 QC 827
           +C
Sbjct: 614 RC 615



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 24/239 (10%)

Query: 68  CTDFKEKSVRISEKSYLVEAKKDQYA--DDEIVAVGLTARQDGD---RPNRRLNDFILHD 122
           C  F   S  I  + +  +A ++  A  +D++V   L++ +DGD   RP   +  F + D
Sbjct: 152 CGQFLNNSDLIYYQGHPQDAVEEYIALTNDKLV---LSSGEDGDIMERPQTNITGFTIFD 208

Query: 123 ENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGS 179
           E G   P++  ++E D  +++SG +  +   S    E+ +  +  G I  W I G++ G 
Sbjct: 209 EQGHLCPIDGGLVENDVRIYMSGYLKSICSDSSEIDEESIPVKDVGPIIEWFIHGFDGGD 268

Query: 180 -PVIWLSTDIADYDCLKPASSYKKYYELFFEK---ARACIEVYKKLSKTSGGNSDCSIDE 235
              I LST+  +Y+ LKP+ +Y       +EK   ++  +E  ++         D     
Sbjct: 269 RNCITLSTEFGEYNLLKPSEAYTPLMNNLYEKIWLSKVVVEFLEEYHYLQPSYED----- 323

Query: 236 LLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVAL 294
            L  VVR  S  +        ++ +    +F+ +Q++ L+   +++D+    LP +  L
Sbjct: 324 -LLEVVRDFSIPE-LNNKKMTEEMLHKHAQFVCDQVVSLE--IEEDDEPLITLPCMREL 378


>gi|321469202|gb|EFX80183.1| hypothetical protein DAPPUDRAFT_346987 [Daphnia pulex]
          Length = 1400

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/477 (46%), Positives = 299/477 (62%), Gaps = 65/477 (13%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L TLDIFAGCGGLSEGL QSG++ T WAIE E  A +AF+LN+P++ +  ++CN IL+  
Sbjct: 926  LKTLDIFAGCGGLSEGLHQSGVAKTYWAIECEPTAAQAFRLNNPDAAVFTDDCNTILKMA 985

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            ++                    L++N    LP    V+ + GGPPCQGFSGMNRFN   +
Sbjct: 986  ID------------------GQLEQNG-QVLPPKDGVELLCGGPPCQGFSGMNRFNSRQY 1026

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S  +  +I+++LS+ DY++PR+F+LENVRNFVSF +    +LT+  L+ MGYQ  FG+L+
Sbjct: 1027 SSFRNSLIVSYLSYCDYYRPRFFILENVRNFVSFKRNMVLKLTMRCLVRMGYQCTFGVLQ 1086

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANG 1358
            AG +GVSQ+R+RAFI+AA+P + LP +PEP HVF+    +L + +  +  YS  R   + 
Sbjct: 1087 AGNYGVSQTRRRAFIFAAAPGEKLPLYPEPTHVFSRRGCQLSVAVGRDKFYSNCRWLLS- 1145

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN----MAVLTDHISKEM 1414
            AP+R +TVRD + DLP + NGA +  + Y  DP S FQ+ +RG      +VL DHISKEM
Sbjct: 1146 APYRTVTVRDAMSDLPEIPNGAKQEEISYGGDPQSHFQRWMRGTDSEQSSVLRDHISKEM 1205

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---------------------------- 1446
              L   R   IP +PG+DW DLP+ +V+L  G                            
Sbjct: 1206 APLVEARIAFIPSKPGSDWRDLPNTEVRLKDGVMTVKLRYTHEDKNGRSLSGAMRGVCSC 1265

Query: 1447 -----------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMC 1495
                       Q   LIPWCLP+T  RHN W GL+GRL+W+G F T+IT+P+PMGK G  
Sbjct: 1266 AEGRQCDPLDKQHNTLIPWCLPHTGNRHNNWAGLYGRLEWDGFFSTTITNPEPMGKQGRV 1325

Query: 1496 FHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             HP+Q R+++VRECARSQGFPDSY+F G+I  KHRQ+GNAVPP LA A+G ++ + V
Sbjct: 1326 LHPEQHRVVSVRECARSQGFPDSYRFFGNITDKHRQVGNAVPPPLARAIGLEIHKCV 1382



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/387 (21%), Positives = 146/387 (37%), Gaps = 64/387 (16%)

Query: 494 LSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLK 551
           +  I EW I    G     +   T  A Y L   S+ Y P    + +   ++ ++I +L 
Sbjct: 237 IGPINEWFISGFDGGEKAIMCFATSYADYYLMSASELYEPIMNELEEKIFLSKTVIELLI 296

Query: 552 EQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKK 611
           E        + D++ RL        S +S D  ++ RY       V    A   +++   
Sbjct: 297 EDDNAE---YEDLLTRLQNSLMPNGSRVSED--SLLRYAEFVCDRVYHFDAAGAEDEP-- 349

Query: 612 CAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINR 671
              I+    +   +     L K++  +K E    P+A  GP         +ATTT L+  
Sbjct: 350 -PLILSPCMRTLIQLSGITLGKRRATRKLEKRRQPKAKKGP------NWTKATTTPLVGY 402

Query: 672 IWGEYYSN--------YSPEDGKEETACEANEDEEVEEQGE------------------- 704
           ++  ++ +        + P      T C   E  +  + G+                   
Sbjct: 403 VFESFFRDQMEQGEDKFGPTSAPRRTRCGICEACQQTDCGKCNFCRDMVKFGGSGRSKQS 462

Query: 705 -------------NEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK-SG 750
                         ++DD  +  L +E   +S  V  +   +    +I W+G  +++   
Sbjct: 463 CVLRKCPNRAVQVADDDDELDAVLDTEIEVVSLDVDHKKPVKRHAYKIEWDGPELKEVDD 522

Query: 751 LALYKKAIVHGEV-VSLGSAVLVEVDELDQLPVIYFVEYMF---EATGGCKLFHGIIMQR 806
           L  Y  AIV+G++ V  G  V +E D+   +P +Y  E +    +   G +  H     R
Sbjct: 523 LTFYSAAIVNGDMRVFAGGHVTIEPDD-PSIP-MYIAEVIALWEDGKSGEQFLHARWFCR 580

Query: 807 GSHTVLGNTANE-REVFLANQCRDLEL 832
           G+ TVLG T ++ RE+ L   C DL L
Sbjct: 581 GTDTVLGETCDDPRELVLIEDCEDLLL 607


>gi|47220040|emb|CAG12188.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1209

 Score =  438 bits (1127), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 291/914 (31%), Positives = 440/914 (48%), Gaps = 179/914 (19%)

Query: 731  KSRSTKKEITWEGECVRKSG-LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            + + T+  + W GE V   G    YK+  ++ EV+ +G  V V  ++      +  +  +
Sbjct: 377  RKKQTECNLMWIGEPVLTEGKRNYYKQVSLNNEVLEVGDCVSVSSEDPSTPLYLARITSL 436

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVP 847
            +E   G K+FH +   RG HTVLG  ++  E+ L ++C D+ L  +  K  + VDI+ + 
Sbjct: 437  WEDAHG-KMFHAMWFLRGIHTVLGECSDPLELVLVDECEDMHLSYVQGKGGLDVDIKVI- 494

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP--VDSMGLGVG 905
                                E+  K      ++ +  Y P+   F   P    S      
Sbjct: 495  --------------------EDDGK-----SFFYQFWYDPDFARFETPPKTTPSEDCKFK 529

Query: 906  SCHACGTKESEKEKETFKVH--------SKTSFV---YGTAEYFVHDYVYISPHHFTW-- 952
             C +C     +KE+E   V         SK  F    +   ++ V   VY+ P  F +  
Sbjct: 530  FCASCVRTTEQKEQEIPHVFELLDEDSDSKALFALACFKGEQFRVGHSVYLPPDAFNFSL 589

Query: 953  ------------DKAEGETFK----------AGRNV-GLKPYVVCQLLEIIVPK----EP 985
                        D  + E +            G N+    P+ + ++ EI  PK    +P
Sbjct: 590  KPASPVKRSHRKDDVDEELYPEYYRKSSDYIKGSNLDAPDPFRIGRIKEIFCPKRSNGKP 649

Query: 986  KRAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKN 1043
              +EVK   +++ +F+RP++     +  Y +DI ++Y+S+E   + +  + G+C+V    
Sbjct: 650  DTSEVK---LRLYKFYRPENTHKGVKATYHADINQLYWSDEEVTVDMAQVLGRCQVEYGE 706

Query: 1044 DI--PACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCI 1101
            D+  P     +     F+    ++    S +  P H +     G    +   + K     
Sbjct: 707  DLNEPVQEYSSGGPDRFYFLEAYNAKTKSFEDPPNHARSVVHKGKGKGKGKGKGKGKAAS 766

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
            E +D      +    +     TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+L
Sbjct: 767  ESQD---TPNEPQTLKVPKYRTLDVFSGCGGLSEGFHQAGISETLWAIEMWEPAAQAFRL 823

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN 1221
            N+P + +   +CN++L+ VM              + E   SL +     LP  G V+ + 
Sbjct: 824  NNPGATVFTEDCNILLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLC 865

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            GGPPCQGFSGMNRFN  T+S  +  +++++LS+ DY++P++FLLENVRNFVSF      +
Sbjct: 866  GGPPCQGFSGMNRFNSRTYSAFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKSSMVLK 925

Query: 1282 LTLASLLEMGYQVRFGILE-AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELK 1340
            LTL  L+ MGYQ  FG+L+ +G  G   S      WAA                      
Sbjct: 926  LTLRCLVRMGYQCTFGVLQVSGTPGCVGSG-----WAA---------------------- 958

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
                         S  NG  +R +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IR
Sbjct: 959  ---------GVYLSRGNGGIYRTITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIR 1009

Query: 1401 GN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------ 1446
            G     +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G            
Sbjct: 1010 GTQYQPILRDHICKDMSALVEGRMRHIPLAPGSDWRDLPNIEVRLRDGTMTKKLRYTHSD 1069

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 1070 KKNGRSSTGALRGVCTCAGGTPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 1129

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G+I  KHRQ+GNAVPP
Sbjct: 1130 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNILDKHRQVGNAVPP 1189

Query: 1539 TLAFALGRKLKEAV 1552
             L+ A+G ++K+ V
Sbjct: 1190 PLSRAIGLEIKKCV 1203



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  ++ +F ++D+ G   P +   I+   +L+ S ++ P+ + +    + GV  +  G
Sbjct: 56  DLPQHKITNFSVYDKRGHLCPFDSGLIEKNVELYFSCVVKPIYDDNPC-LDGGVPAKKLG 114

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I +W I+G++ G   +I  +T  ADY  ++ +  Y   + L  EK      V + L K 
Sbjct: 115 PINAWWITGFDGGEKALIGFTTAFADYILMQSSEEYAPIFALMQEKIYMSKIVVEFLQKN 174

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
                +  ++++   V  +     CF      +D ++   +F+  Q+   DE    ++++
Sbjct: 175 REATYEDLLNKIETTVPPAGLNFNCF-----TEDTLLRHAQFVVEQVESYDEAGDSDEER 229

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 230 IIVTPCMRDL 239


>gi|449268905|gb|EMC79734.1| DNA (cytosine-5)-methyltransferase 1, partial [Columba livia]
          Length = 1252

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 369/1315 (28%), Positives = 579/1315 (44%), Gaps = 272/1315 (20%)

Query: 402  DELLA-YDSDYDSCD-IDQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGK 459
            DE L+ +D++ D  +  + LP+  +  +S+Y+    L   +   ++   +I++   G+ K
Sbjct: 39   DERLSLFDANEDGFESYEDLPQHKVTSFSVYDKRGHLCPFDTGLIE--RNIELYFSGAVK 96

Query: 460  MISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEF--GSSMIFISIRTDL 517
             I D+    CLD        GV   +        L  I  W I    G     I   T  
Sbjct: 97   PIYDDNP--CLD-------GGVRAKK--------LGPINAWWITGFDGGEKALIGFSTAF 139

Query: 518  AWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHS 577
            A Y L +PS++YAP +  + +   ++  ++  L+    VS   + D++ ++         
Sbjct: 140  ADYILMEPSEEYAPIFALMQEKIYMSKIVVEFLQNNRDVS---YEDLLNKIE-------- 188

Query: 578  YISSDPAAV------ERYVVVHGQIVLQLFAEY--------PDEQIKKCAF-IIGLMKKM 622
              +  PA +      E  ++ H Q V++    Y        P   I  C   +I L    
Sbjct: 189  -TTVPPAGLNFNRFTEDSLLRHAQFVVEQVESYDEAGDSDEPPVLITPCMRDLIKLAGVT 247

Query: 623  EERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRK-VMQATTTRLINRIWGEYYSNYS 681
              +     + +++ V++  I         P  + K K   +ATTT+L+  I+  ++S   
Sbjct: 248  LGKRVPSPVGRRRAVRRQAIR-------HPTKIDKDKGPTKATTTKLVYHIFDTFFSEQI 300

Query: 682  PEDGKEET-----------ACEANEDEEVEE----QGENEEDDTEEEKLISEERQISCSV 726
             +D +E+             CE  +  E  +    Q   +   +   K    +R+   ++
Sbjct: 301  EKDEREDDKENAMKRRRCGVCEVCQQPECGKCKACQNMVKFGGSGRSKQACLQRRCP-NL 359

Query: 727  AVQI------------------------KSRSTKKEITWEGECVRKSGLA-LYKKAIVHG 761
            AV+                         K +  K  I+W GE ++  G    Y++  +  
Sbjct: 360  AVREADEDEEVDDNIPEMPSPKKMLQGRKKKQNKSRISWVGEPIKSDGKKDYYQRVCIDS 419

Query: 762  EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREV 821
            E + +G  V V  D+  +   +  V  M+E + G ++FH      GS TVLG T++  E+
Sbjct: 420  ETLEVGDCVSVSPDDPTKPLYLARVTAMWEDSSG-QMFHAHWFCPGSDTVLGATSDPLEL 478

Query: 822  FLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEY 879
            FL ++C D++L  I  K  V+    S  W  +   ++      D  R             
Sbjct: 479  FLVDECEDMQLSYIHGKVKVIYKAPSENWSMEGGLEVEIKMVEDDGRT------------ 526

Query: 880  YCKSLYWPERGAFFILPVDSMGLGVGS---CHACGTKESEKEKETFKV-----HSKTSFV 931
            Y   +++ +  A F  P  +          C +C   +  ++KE  KV            
Sbjct: 527  YFYQMWYDQEYARFESPPKTQPAEDNKYKFCMSCTRLDEVRQKEIPKVAEPLEEGDGKMF 586

Query: 932  YGTA-----EYFVHDYVYISPHHFTWD------------------------KAEGETFKA 962
            YG A     +Y V D VY+ P  F++                         +   E  K 
Sbjct: 587  YGVATKNGVQYRVGDGVYLLPDAFSFSMKPASPAKRPKKEAVDEELYPEHYRKYSEYIKG 646

Query: 963  GRNVGLKPYVVCQLLEIIVP----KEPKRAEVKSTQVKVRRFFRPDDI--SAEKAYCSDI 1016
                   PY V ++ EI        +P  A++K   +++ +F+RP++   S + +Y +DI
Sbjct: 647  SNLDAPDPYRVGRIKEIFCNIRSNGKPNEADIK---LRICKFYRPENTHKSVKASYHADI 703

Query: 1017 REVYYSEETHLIFVEAIAGKCEVRKKNDIPAC---NAPAIFQHIFFCEHLHDPSKGSLKQ 1073
              +Y+S+E   +   A+ G+C V    D+       +       +F E  +  +K S + 
Sbjct: 704  NLLYWSDEEATVDFRAVQGRCTVVYGEDLTESIQDYSAGGLDRFYFLEAYNAKTK-SFED 762

Query: 1074 LPAHIKLRYSSGSLDSEAASRRKKGKCIEGED------ELEVEKQGGASQENHLATLDIF 1127
             P H +   + G    +   + K       E       EL++ K         L TLD+F
Sbjct: 763  PPNHARSSGNKGKGKGKGKGKGKGKSSSSCEQSEQEPAELKLPK---------LRTLDVF 813

Query: 1128 AGCGGLSEGLQQSGISS-TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGD 1186
            +GCGGLSEG  Q+G    + W             +    + +   +CNV+L+ VM     
Sbjct: 814  SGCGGLSEGFHQAGSGPVSAW-------------MGDQCTTVFTEDCNVLLKLVM----- 855

Query: 1187 AEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCE 1246
                     + E   SL +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  
Sbjct: 856  ---------SGEKTNSLGQK----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNS 902

Query: 1247 MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGV 1306
            ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL  L+ MGYQ  FG+L+ G    
Sbjct: 903  LVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQVG---- 958

Query: 1307 SQSRKRAFIWAASPHDT----LPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
                      AA+P D      P W  P  V AAP    +         V       PFR
Sbjct: 959  ----------AATPRDAELGRKPFWAPPGSV-AAPRPSGVTIGALTAPRVPPRTYSGPFR 1007

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLI 1420
             +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IRG+    +L DHI K+M+ L   
Sbjct: 1008 TITVRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIRGSQYQPILRDHICKDMSALVAA 1067

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTG---------------------------------- 1446
            R + IP  PG+DW DLP+ +V+LS G                                  
Sbjct: 1068 RMRHIPLAPGSDWRDLPNIEVRLSDGTTTRKLRYTHHEKKNGRSSSGALRGVCCCAEGKP 1127

Query: 1447 ------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQ 1500
                  Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q
Sbjct: 1128 CDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQ 1187

Query: 1501 DRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             R+++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP LA A+G ++K  V +K
Sbjct: 1188 HRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKWCVLAK 1242



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 28/203 (13%)

Query: 104 ARQDG-----DRPNRRLNDFILHDENGLPQPLEMLEID---DLFISGLILPLQESSDREK 155
           A +DG     D P  ++  F ++D+ G   P +   I+   +L+ SG + P+ + +    
Sbjct: 47  ANEDGFESYEDLPQHKVTSFSVYDKRGHLCPFDTGLIERNIELYFSGAVKPIYDDNPC-L 105

Query: 156 EKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
           + GVR +  G I +W I+G++ G   +I  ST  ADY  ++P+  Y   + L  EK    
Sbjct: 106 DGGVRAKKLGPINAWWITGFDGGEKALIGFSTAFADYILMEPSEEYAPIFALMQEK---- 161

Query: 215 IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDF----VISQGEFIFNQ 270
           I + K + +    N D S ++LL  +  ++  +     G++   F    ++   +F+  Q
Sbjct: 162 IYMSKIVVEFLQNNRDVSYEDLLNKIETTVPPA-----GLNFNRFTEDSLLRHAQFVVEQ 216

Query: 271 LIGLDETSKKNDQKFAELPVLVA 293
           +   DE    +     E PVL+ 
Sbjct: 217 VESYDEAGDSD-----EPPVLIT 234


>gi|343172218|gb|AEL98813.1| DNA (cytosine-5)-methyltransferase, partial [Silene latifolia]
          Length = 264

 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/266 (76%), Positives = 228/266 (85%), Gaps = 2/266 (0%)

Query: 1094 RRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEE 1153
            R+KKGK  E +D   ++ +   S +N LATLDIFAGCGGLSEGL++SG+S TKWAIEYEE
Sbjct: 1    RKKKGKGKEVDDNENLDDK--KSFKNQLATLDIFAGCGGLSEGLERSGVSQTKWAIEYEE 58

Query: 1154 PAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPL 1213
            PAGEAF LNHPE+ + +NNCNVIL A+M  CGD +DC+ST EA++ A  LDEN IN LP 
Sbjct: 59   PAGEAFNLNHPEASVFVNNCNVILSAIMSACGDEDDCMSTPEASDQAKKLDENEINKLPR 118

Query: 1214 PGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS 1273
            PGQVDFINGGPPCQGFSGMNRFN+S WSKVQCEMILAFLSFADYF+P+YFLLENVRNFVS
Sbjct: 119  PGQVDFINGGPPCQGFSGMNRFNKSAWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVS 178

Query: 1274 FNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV 1333
            FNKGQTFRL +ASLLEMGYQVRFGIL+AGAFGVSQSRKRAFIWAASP +TLP+WPEPMHV
Sbjct: 179  FNKGQTFRLAIASLLEMGYQVRFGILDAGAFGVSQSRKRAFIWAASPEETLPDWPEPMHV 238

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANGA 1359
            FA  ELKI L    QY+AVRSTA GA
Sbjct: 239  FAGSELKISLGSGTQYAAVRSTATGA 264


>gi|343172220|gb|AEL98814.1| DNA (cytosine-5)-methyltransferase, partial [Silene latifolia]
          Length = 264

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/266 (75%), Positives = 227/266 (85%), Gaps = 2/266 (0%)

Query: 1094 RRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEE 1153
            R+KKGK  E +D   ++ +   S +N LATLDIFAGCGGLSEGL++SG+S TKWAIEYEE
Sbjct: 1    RKKKGKGKEVDDNENLDDK--KSFKNQLATLDIFAGCGGLSEGLERSGVSQTKWAIEYEE 58

Query: 1154 PAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPL 1213
            PAGEAF LNHPE+ + +NNCNVIL A+M  CGD +DC+ST EA++ A  LDE+ IN LP 
Sbjct: 59   PAGEAFNLNHPEASLFVNNCNVILSAIMSACGDEDDCISTPEASDQAKKLDESEINKLPR 118

Query: 1214 PGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS 1273
            PGQVDFINGGPPCQGFSGMNRFN+S WSKVQCEMILAFLSFADY +P+YFLLENVRNFVS
Sbjct: 119  PGQVDFINGGPPCQGFSGMNRFNKSAWSKVQCEMILAFLSFADYLRPKYFLLENVRNFVS 178

Query: 1274 FNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV 1333
            FNKGQTFRL +ASLLEMGYQVRFGIL+AGAFGVSQSRKRAFIWAASP +TLP+WPEPMHV
Sbjct: 179  FNKGQTFRLAIASLLEMGYQVRFGILDAGAFGVSQSRKRAFIWAASPEETLPDWPEPMHV 238

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANGA 1359
            FA  ELKI L    QY+AVRSTA GA
Sbjct: 239  FAGSELKISLGSGTQYAAVRSTATGA 264


>gi|224613538|gb|ACN60348.1| DNA [Salmo salar]
          Length = 466

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/452 (44%), Positives = 284/452 (62%), Gaps = 63/452 (13%)

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
            T WAIE  +PA +AF+LN+P + +   +CNV+L+ VM              + E   SL 
Sbjct: 2    TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------SGEKTNSLG 47

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
            +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  +++++LS+ DY++P++FL
Sbjct: 48   QR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFL 103

Query: 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL 1324
            LENVRNFVSF      +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + L
Sbjct: 104  LENVRNFVSFKSSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKL 163

Query: 1325 PEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASK 1382
            P +PEP+HVFA  A  L +++ D   +S V +  NG  +R +TVRDT+ DLP + NGAS 
Sbjct: 164  PRYPEPLHVFAPRACSLNVVVDDKKYFSNV-TRGNGGVYRTITVRDTMSDLPEIRNGASA 222

Query: 1383 TIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440
              + Y  +P SWFQ++IRG     +L DHI K+++ L   R + IP  PG+DW DLP+ +
Sbjct: 223  LEISYNGEPQSWFQRQIRGTQYQPILKDHICKDLSALVAARMRHIPLAPGSDWRDLPNIE 282

Query: 1441 VKLSTG----------------------------------------QVVDLIPWCLPNTA 1460
            V+L  G                                        Q   LIPWCLP+T 
Sbjct: 283  VRLRDGTSSKKLRYTHPDKKNGRSSSGALRGVCTCSGGVPCDPADRQFNTLIPWCLPHTG 342

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
             RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+
Sbjct: 343  NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 402

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            F G++  KHRQ+GNAVPP L+ A+G ++K+ V
Sbjct: 403  FFGNVLDKHRQVGNAVPPPLSRAIGLEIKKCV 434


>gi|222840488|gb|ACM68681.1| DNA methyltransferase 1 [Capra hircus]
          Length = 1420

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 262/764 (34%), Positives = 394/764 (51%), Gaps = 95/764 (12%)

Query: 739  ITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
            I+W G+ V+  G  + YKK  +  E + +G  V V  D+  +   +  V  ++E +   +
Sbjct: 655  ISWVGDAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 714

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKD 855
            +FH      G+ TVLG T++  E+FL ++C D++L  I  K  V+    S  W  +   D
Sbjct: 715  MFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVQVIYKAPSENWALEGGVD 774

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHACGT 912
                   D  +             Y   L++ +  A F  P  +          C +C  
Sbjct: 775  PEALMSEDDGKT------------YFYQLWYDQDYARFESPPKTQPTEDNKYKFCVSCAR 822

Query: 913  KESEKEKETFKVHSKTSFVYGTA----------EYFVHDYVYISPHHFTWDKAEGETFKA 962
                ++KE  +V  +   + G            +Y V D VY+ P  FT++       K 
Sbjct: 823  LAEMRQKEIPRVMEQLQDLEGRVLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKR 882

Query: 963  GRNVGL------------------------KPYVVCQLLEIIVPKEPK-RAEVKSTQVKV 997
             R   +                        +PY V ++ EI   K+   R      ++KV
Sbjct: 883  PRKEPVDEALYPEHYRKYSDYIKGSNLDAPEPYRVGRIKEIFCSKKSNGRPNETDIKIKV 942

Query: 998  RRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC------N 1049
             +F+RP++   S   +Y +DI  +Y+S+E  ++  +A+ G+C V    D+P C       
Sbjct: 943  NKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECLQDFSAG 1002

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
             P  F   +F E  +  SK S +  P H +   + G    +  +R K   C   E E E+
Sbjct: 1003 GPDRF---YFLEAYNAKSK-SFEDPPNHARSPGNKGKGKGKGKNRTKSQTCEPSELETEI 1058

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            +          L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P S + 
Sbjct: 1059 KLP-------KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVF 1111

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +CNV+L+ VM              A E+  S  +     LP  G V+ + GGPPCQGF
Sbjct: 1112 TEDCNVLLKLVM--------------AGEVTNSRGQK----LPQKGDVEMLCGGPPCQGF 1153

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFN  T+SK +  ++++FLS+ DY++PRYFLLENVRNFVSF +    +LTL  L+ 
Sbjct: 1154 SGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKRSMVLKLTLRCLVR 1213

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNY 1347
            MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D  
Sbjct: 1214 MGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAPRACQLSVVVDDKK 1273

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAV 1405
              S +   ++G PFR +TVRDT+ DLP V NGAS   + Y  +P SWFQ+++RG+    +
Sbjct: 1274 FVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGSQYQPI 1332

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            L DHI K+M+ L   R + IP  PG+DW DLP+ +V+LS G + 
Sbjct: 1333 LRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTLA 1376



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           D P  +L  F ++ + G   P++  ++E D +L  SG   P+ E  D   E G+  + FG
Sbjct: 326 DLPQHKLTCFSVYCKRGHLCPIDTGLIEKDVELLFSGSAKPIYED-DPSPEGGINGKNFG 384

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W I+G++ G   ++  ST  A+Y  + P+  Y   + +  EK    I + K + + 
Sbjct: 385 PINEWWIAGFDGGEKALLGFSTSFAEYILMDPSPEYAPLFSVMQEK----IYISKIVVEF 440

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
             GN D + ++L+  +  ++          + +D ++   +F+  Q+   D     ++Q 
Sbjct: 441 LQGNPDSTYEDLINKIETTVPPCMLNLNRFT-EDSLLRHAQFVVEQVESYDRAGDSDEQP 499

Query: 285 FAELPVLVAL 294
               P +  L
Sbjct: 500 IFLSPCMRDL 509


>gi|242023477|ref|XP_002432160.1| DNA methyltransferase, putative [Pediculus humanus corporis]
 gi|212517542|gb|EEB19422.1| DNA methyltransferase, putative [Pediculus humanus corporis]
          Length = 1161

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 316/1149 (27%), Positives = 518/1149 (45%), Gaps = 243/1149 (21%)

Query: 494  LSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLK 551
            L  I EW I    G +   I+ RT  A Y L + S +Y+ +     + A +   +I  L 
Sbjct: 155  LGPIVEWWISGYDGGNSFLIAFRTPYAEYILMESSSEYSSFMRIPKQKALLTKIVIEFL- 213

Query: 552  EQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKK 611
                 S+ +F +++ RL+E+         S P  +E                 P +++  
Sbjct: 214  --NNTSKPTFEELLNRLNEV---------SVPDDIE-----------------PFDELSI 245

Query: 612  CAFIIGLMKKMEERHHTKWLVKKKKVQ----KSEINLNPRASMGPVVVSKRKVMQATTTR 667
            C     ++ ++ E    K L+    +Q    K +IN+  +   G      + + + TTT 
Sbjct: 246  CKNAQFIIDQVREVDSNKKLISTPAIQDMIKKYKINIG-KLDYGRKRFGYKSIFKTTTTT 304

Query: 668  LINRIWGEYYSNYSPEDG-KEETACEANEDEEVEEQGENEEDDTEEEKLISEERQISCSV 726
             + R   +++  ++ E+G  ++TA           +  N  DD+  +K+I          
Sbjct: 305  PLVRNHFKFF--FNKENGLSDKTA-----------KKINSIDDSSPKKII---------- 341

Query: 727  AVQIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFV 786
                       + +WE    + S  A     +V+ E+  +   V +  ++  +   ++ +
Sbjct: 342  -----------KFSWE----KNSNFA-----VVNDEIFHVKDFVEINTNQSVKENKVFRI 381

Query: 787  EYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSV 846
            E  FE     K+ H I   +GS T+LGN  +  E+F   +C D  +  I + + V+IR  
Sbjct: 382  ERFFEQNFTKKV-HCIEFIKGSETILGNACDPFEIFYIEECSDWPICKITKKLNVEIRKP 440

Query: 847  P--WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGV 904
            P  W          +  V                ++ +  Y    G F     D      
Sbjct: 441  PSTWDQYLNYQPTPSQNV----------------FFIQKKYLEAYGTF----EDYEENSS 480

Query: 905  GSCHACGTKESEKEKE---TF--KVHSKTSFVY-----GTAEYFVHDYVYISPHHFTWDK 954
              C  C  K  E++     TF  KVH     +Y        EY     V++ P    ++ 
Sbjct: 481  SECSVCNKKLKEEKATAITTFGQKVHDSGIILYEKIVRTNEEYVPGCCVFLEPFSVVFEA 540

Query: 955  AEG-------------------ETFKAGRNVGL-----KPYVVCQLLEIIVPKEPKRAEV 990
             +                    E ++  + + L     +P+VV  +  I           
Sbjct: 541  QKSSLRIEKTLVTIKANEVIYPEIYRKAKEINLTEECPEPFVVAYVENIF---SLVGGSQ 597

Query: 991  KSTQVKVRRFFRPDDISAEKA---YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPA 1047
            K+  + V+ F+RP++    KA      D++ +Y+SEE   + ++ + G+C V      P 
Sbjct: 598  KNLFLTVKLFYRPENTRVIKAGDKRLFDLQLLYWSEEEVKVSLDHVQGRCNVIHSEFPP- 656

Query: 1048 CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
                                     Q+ + I+  + SG   +     + +   I   +E 
Sbjct: 657  -------------------------QVNSKIQFYFHSGFNSANETFYKVQNAVIRNAEE- 690

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
                         L TL+ F+GCGGL+EGL+QSGI+   WAI+ ++P  EAFKLN    +
Sbjct: 691  ------NVKDVKKLKTLNAFSGCGGLAEGLRQSGIADIAWAIDIDKPTSEAFKLNFSNIV 744

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
            M  ++CN  L+ V+                    + D++  N  P  G+V+F+ GGPPCQ
Sbjct: 745  MFESDCNFFLKEVLS-----------------GKTFDKDG-NRYPEKGEVEFLCGGPPCQ 786

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            GFS MNRF     S+    +I+ +LSF DY++P++FLLENV+NF+SF K   F+  L+ L
Sbjct: 787  GFSTMNRFTTKEESQYNNSLIITYLSFCDYYRPKFFLLENVKNFLSFKKSLFFKHVLSCL 846

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD-- 1345
            + MGYQ  FG+L+AG +G+ QSR+R FI AA+P   LP +P+P HVF    LK   S+  
Sbjct: 847  VTMGYQCSFGVLQAGNYGLPQSRRRLFILAAAPGYRLPFFPKPTHVFYG-SLKNFDSEMN 905

Query: 1346 --NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM 1403
              N++    ++ +  APFR +TVRD I DLP VG  ++K    + + P S+ Q+ ++ + 
Sbjct: 906  YTNFRCRFSKTLSPSAPFRNVTVRDAIFDLPPVGKASNKN---FSSSPTSY-QRFLKTSS 961

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD------------- 1450
              + DHI+KE++ LN  R + IP   G DW DLP+ +V+L  G + +             
Sbjct: 962  YSVHDHITKEISPLNEARIRHIPASKGCDWRDLPNIQVRLRDGTLTNLLKYSYHDRKNGK 1021

Query: 1451 ---------------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
                                       LIPW L +TA R+N W GL+GRLDW+G F T  
Sbjct: 1022 SCCGLLRGVCSCASGKSCTPKARQNNTLIPWFLAHTANRNNNWSGLYGRLDWDGVFNTVT 1081

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T+P+P  + G   HP++DRI+T+RE AR+QG PDS++F+G++  K RQ+GNAVPP +A A
Sbjct: 1082 TNPEPSNQQGKVLHPEEDRIITIRESARAQGMPDSFKFYGAVADKFRQVGNAVPPPIARA 1141

Query: 1544 LGRKLKEAV 1552
            +G ++ +++
Sbjct: 1142 IGHEILKSL 1150



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 110 RPNRRLNDFILHDENGLPQPLE--MLEIDDL-FISGLILPLQESSDREKEKGVRCEGFGR 166
           +P  ++  F + D  G   P +  ++E D L F SG I P+ +  D     GV  +  G 
Sbjct: 99  KPLHKITCFTVFDGEGHLCPFDTGLIENDQLIFFSGYIKPIYDD-DPSPNNGVPAQELGP 157

Query: 167 IESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTS 225
           I  W ISGY+ G S +I   T  A+Y  ++ +S Y  +  +  +KA     V + L+ TS
Sbjct: 158 IVEWWISGYDGGNSFLIAFRTPYAEYILMESSSEYSSFMRIPKQKALLTKIVIEFLNNTS 217


>gi|208964726|gb|ACI31553.1| MET1 [Nicotiana benthamiana]
          Length = 227

 Score =  408 bits (1048), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/227 (83%), Positives = 209/227 (92%)

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            EDEL V +    SQ+N LATLDIFAGCGGLSEGLQ+SG+S TKWAIEYEEPAG+AFKLNH
Sbjct: 1    EDELRVGQLNETSQQNRLATLDIFAGCGGLSEGLQRSGVSDTKWAIEYEEPAGDAFKLNH 60

Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
            PE+ + I NCNV LRAVM+KCGDAEDC+ST EA+ELAA++DEN +N+LPLPGQVDFINGG
Sbjct: 61   PEAEVFIQNCNVFLRAVMQKCGDAEDCISTPEASELAAAMDENELNSLPLPGQVDFINGG 120

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY++P+YFLLENVRNFVSFN+ QTFRLT
Sbjct: 121  PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYYRPKYFLLENVRNFVSFNQKQTFRLT 180

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
            +ASLLEMGYQVRFGILEAGAFGV QSRKRAFIWAASP + LPEWPEP
Sbjct: 181  VASLLEMGYQVRFGILEAGAFGVPQSRKRAFIWAASPEEILPEWPEP 227


>gi|189233760|ref|XP_001814230.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase [Tribolium
            castaneum]
          Length = 1187

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 326/608 (53%), Gaps = 98/608 (16%)

Query: 995  VKVRRFFRPDDISAEK--AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC---- 1048
            + +R FFRP++       +Y SDI  +++S +   +    + GKC V   +D        
Sbjct: 629  MAIRVFFRPENTKGGSMLSYQSDINLLFWSTKFITVPFRKVMGKCYVVYCSDEQKAREWS 688

Query: 1049 -NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
               P    + ++    +DP  G L      +   YS   L     +         G+DE 
Sbjct: 689  EGGP----YRYYFRQQYDPDCGEL------VPPTYSCTRLALREGA---------GQDER 729

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
               +         L  LD+FAGCGGLS+G   +G+++TKWAIE ++PA + F+ N+    
Sbjct: 730  PFGRP--------LKCLDVFAGCGGLSQGFHAAGVANTKWAIENDKPALDTFRHNNRTCH 781

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
            +  ++CNV+LR VM   G                         LP   +V+ I GGPPCQ
Sbjct: 782  VFRDDCNVLLRNVMSGKG------------------------GLPPKSEVEMIVGGPPCQ 817

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            GFSGMNRFN+  +S  +  ++++ LS  DY++P  F+LENVRNF+ +  G   +LTL  L
Sbjct: 818  GFSGMNRFNEGEYSLFKNSLVVSLLSLCDYYRPLIFVLENVRNFMLYKGGLILKLTLQCL 877

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDN 1346
            + +GYQVR  I+EAG FGV Q+R+R  + A++P   LP  PEP HVF     ++ +  D 
Sbjct: 878  VAIGYQVRISIVEAGEFGVPQARRRFILIASAPGYQLPRIPEPQHVFLQRGSRLDIYVDG 937

Query: 1347 YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDP-VSWFQKRIRGNMAV 1405
             +Y+        AP+R + VRD I DLPA+ +  ++  M Y +D   S FQ+++RGN   
Sbjct: 938  VKYTNGNFWTQSAPYRMLHVRDAIADLPAIEHDDNRPQMPYDDDEGTSHFQRKMRGNQEE 997

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD--------------- 1450
            L DHI K +  +   R + IP + GADW +LP+ +V+L  G + +               
Sbjct: 998  LLDHICKPIAPIVQTRIKLIPPKGGADWRNLPNVRVQLPDGTMTEVLQYRYRTKKQKDGE 1057

Query: 1451 -----------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ 1487
                                   LIPWCLP+TA RHN W G++GRLDW G F T+ T+P+
Sbjct: 1058 PNRGVCACSVEKACDPNDRQSNTLIPWCLPHTADRHNNWAGVYGRLDWSGYFATTTTNPE 1117

Query: 1488 PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            PMGK G   HPDQ+R+++VRECARSQGFPD  +F GS+  K+RQIGNAVPP LA A+G +
Sbjct: 1118 PMGKQGRVIHPDQNRLISVRECARSQGFPDKTKFFGSVTSKYRQIGNAVPPPLAKAIGLE 1177

Query: 1548 LKEAVESK 1555
            +K A+ ++
Sbjct: 1178 IKRALRNR 1185



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)

Query: 106 QDGDRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCE 162
           ++GD P+ ++  F ++D N    PL+   +     L I G I P+ +  D   E G+   
Sbjct: 40  EEGDLPSHKITCFSIYDLNDHLCPLDTGLLQKEVYLHIGGYIKPIFDD-DPSPENGIATL 98

Query: 163 GFGRIESWSISGYEDGSPVIW-LSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKL 221
             G I  W I+G++ G  V+  + T+ A Y  ++P+  Y   ++   EK      V + L
Sbjct: 99  DMGPIHEWFIAGFDGGEKVLLGIITNYAQYVLMEPSLEYAPIFKSLQEKTVLFKFVIEFL 158

Query: 222 SKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLD-ETSKK 280
              S  +   S +ELLA V  S          +  ++F++   +F+ +Q+   D +    
Sbjct: 159 --LSNFSRAPSYEELLAAVENS-------DNPLLTEEFLLQNAQFVCDQIHSFDLDAGDN 209

Query: 281 NDQKFAELPVLVAL 294
           ND     +P +  L
Sbjct: 210 NDMPLLTMPCVRTL 223


>gi|68655480|emb|CAJ01710.1| putative cytosine-5 DNA methyltransferase [Hordeum vulgare subsp.
            vulgare]
          Length = 251

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/239 (77%), Positives = 213/239 (89%)

Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
            PE+ + ++NCNVIL+A+M+KCGD++DCVSTSEAAE AA L E  I NLP+PG+V+FINGG
Sbjct: 10   PEAAVFVDNCNVILKAIMDKCGDSDDCVSTSEAAEQAAKLAEENIKNLPVPGEVEFINGG 69

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPCQGFSGMNRFNQS WSKVQCEMILAFLSFA+YF+PR+FLLENVRNFVSFNKGQTFRL 
Sbjct: 70   PPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLA 129

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
            +ASLLEMGYQVRFGILEAG FGV+QSRKRAFIWAA+P + LP+WPEPMHVFA+PELKI L
Sbjct: 130  VASLLEMGYQVRFGILEAGTFGVAQSRKRAFIWAAAPGENLPDWPEPMHVFASPELKITL 189

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
             D   Y+A +STA GAPFRA+TVRDTIGDLP V NGASK I+EY  +P SWFQK+IRG+
Sbjct: 190  PDGKYYAAAKSTAAGAPFRAITVRDTIGDLPKVENGASKLILEYGGEPTSWFQKKIRGS 248


>gi|395518186|ref|XP_003763246.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like, partial
            [Sarcophilus harrisii]
          Length = 692

 Score =  388 bits (996), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 248/705 (35%), Positives = 373/705 (52%), Gaps = 88/705 (12%)

Query: 789  MFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SV 846
            ++E   G ++FH      GS TVLG T++  E+FL ++C D++L  I   V V  +  S 
Sbjct: 4    LWEDNNG-QMFHAHWFYSGSDTVLGATSDPLELFLVDECEDMQLSYIHSKVNVFYKAPSE 62

Query: 847  PWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV--DSMGLGV 904
             W  +   DI    +V  A  + R        Y+ +  Y P+   F   P+   +     
Sbjct: 63   NWSMEGGSDI----EVPVAENDGRT-------YFYQFWYDPDYARFESPPIVKPTEDNKY 111

Query: 905  GSCHACGTKESEKEKETFKVHSKTSFV-----YGTA-----EYFVHDYVYISPHHF---- 950
              C +C       EK T KV    + V     Y  A     +Y   D V++ P  F    
Sbjct: 112  KFCASCVRLSEMLEKNTPKVLEPLAEVDDKIFYNLAMKKGVQYRKGDGVFLLPDAFGFLI 171

Query: 951  -------------------TWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVK 991
                                + +   +  K       +PY + Q+ EI   KE   A +K
Sbjct: 172  KPPVITRNLKESVNEDQYPEYYRKHSDYVKGSNQDAPQPYRIGQIKEIFCEKESNGAVIK 231

Query: 992  STQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR--KKNDIPA 1047
               +++ +F+RP++   S+ K Y  DI  +Y+S E  ++  E + G+C V+  +  D P 
Sbjct: 232  ---LRINKFYRPENTHKSSTKKYIEDINLLYWSYEEAVVDFEDVQGRCVVKYCEATDTPE 288

Query: 1048 CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDEL 1107
                   +H +F E  ++  K S +++P     +Y+ G        R++KG+  E    L
Sbjct: 289  KYNLGDKEHFYFQE-AYNAKKKSFEEVP-----KYARGK-----EKRKEKGRGSEKLITL 337

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
            E  ++        L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PAG+AF LN+P+++
Sbjct: 338  EPIQEMKEVNVPKLRTLDVFSGCGGLSEGFHQAGISETMWAIEMWKPAGQAFLLNYPKTI 397

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
            +L  +CN++L+ VM              + E   S+ +     LP  G V+ I GGPPCQ
Sbjct: 398  VLSEDCNILLKMVM--------------SGETTNSMGQK----LPQKGDVEMICGGPPCQ 439

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            GFSGMNRFN  T+SK +  +I +FLS+ DY++P++FLLENVRNFVSF +    +LTL  L
Sbjct: 440  GFSGMNRFNTLTYSKFKNSLIASFLSYCDYYRPKFFLLENVRNFVSFKRSMVLKLTLRCL 499

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA-PELKIMLSDN 1346
            ++MGYQ  FGIL+AG +G++Q+R+RAFI AA+P + LP +PEP+HVF+    L   + DN
Sbjct: 500  VQMGYQCTFGILQAGHYGIAQTRRRAFILAAAPGEKLPMFPEPLHVFSTRSSLLSAVIDN 559

Query: 1347 YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG--NMA 1404
             ++ +       APFR +TV D++ DLP + NGAS   + Y+ +P +WFQ++IRG  +  
Sbjct: 560  KRFVSNVKRLTSAPFRTITVYDSLSDLPTIKNGASLEEISYEGEPKTWFQRQIRGPRHQQ 619

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            VL DHI K MN L + R + IP  PG+DW DLP+ +V +S G V 
Sbjct: 620  VLKDHICKTMNALVMARIKLIPLVPGSDWRDLPNIQVHISDGSVT 664


>gi|270015149|gb|EFA11597.1| DNA methyltransferase 1 [Tribolium castaneum]
          Length = 1882

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/800 (32%), Positives = 377/800 (47%), Gaps = 146/800 (18%)

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP--WGHQHRKD 855
            + H  +  RG+ T+LG  AN +E+F +N+C D  +  I     V  ++ P  W      D
Sbjct: 456  MVHVYLFYRGNETILGEVANPQELFASNECEDCPVAAIVGQAKVVYKATPDNWA-----D 510

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLG--VGSCHACGTK 913
            +   + +           G    +Y K  Y  E   F     D + +   + SC  C   
Sbjct: 511  LGGIECL---------PSGDDRFFYAKQ-YDSETATF----TDYVKVRNELDSCGHCRLN 556

Query: 914  ESEKEKET-----FKVHSKTSFVYGTAEYFVHDYVY--ISPHHFTWDKAE-------GET 959
            E  K+ ET      KV  +  F       F+   VY    P   T+D A+        E 
Sbjct: 557  EERKKIETPTFKDNKVQWRNEFYEAGNSVFLDPSVYQFPIPVECTFDDAKEMNESKYPEY 616

Query: 960  FK---AGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK--AYCS 1014
            ++   A  +    P   C  L   +   P         + +R FFRP++       +Y S
Sbjct: 617  YRKREANASCKKMPQPFCIGLIETLCDGPA-----GVLMAIRVFFRPENTKGGSMLSYQS 671

Query: 1015 DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN-----APAIFQHIFFCEHLHDPSKG 1069
            DI  +++S +   +    + GKC V   +D           P    + ++    +DP  G
Sbjct: 672  DINLLFWSTKFITVPFRKVMGKCYVVYCSDEQKAREWSEGGP----YRYYFRQQYDPDCG 727

Query: 1070 SLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAG 1129
             L      +   YS   L       R  G+                     L  LD+FAG
Sbjct: 728  EL------VPPTYSCTRLALREGDERPFGR--------------------PLKCLDVFAG 761

Query: 1130 CGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAED 1189
            CGGLS+G   +G+++TKWAIE ++PA + F+ N+    +  ++CNV+LR VM   G    
Sbjct: 762  CGGLSQGFHAAGVANTKWAIENDKPALDTFRHNNRTCHVFRDDCNVLLRNVMSGKG---- 817

Query: 1190 CVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL 1249
                                 LP   +V+ I GGPPCQGFSGMNRFN+  +S  +  +++
Sbjct: 818  --------------------GLPPKSEVEMIVGGPPCQGFSGMNRFNEGEYSLFKNSLVV 857

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
            + LS  DY++P  F+LENVRNF+ +  G   +LTL  L+ +GYQVR  I+EAG FGV Q+
Sbjct: 858  SLLSLCDYYRPLIFVLENVRNFMLYKGGLILKLTLQCLVAIGYQVRISIVEAGEFGVPQA 917

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            R+R  + A++P   LP  PEP HVF     ++ +  D  +Y+        AP+R + VRD
Sbjct: 918  RRRFILIASAPGYQLPRIPEPQHVFLQRGSRLDIYVDGVKYTNGNFWTQSAPYRMLHVRD 977

Query: 1369 TIGDLPAVGNGASKTIMEYQNDP-VSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPK 1427
             I DLPA+ +  ++  M Y +D   S FQ+++RGN   L DHI K +  +   R + IP 
Sbjct: 978  AIADLPAIEHDDNRPQMPYDDDEGTSHFQRKMRGNQEELLDHICKPIAPIVQTRIKLIPP 1037

Query: 1428 RPGADWHDLPDEKVKLSTGQVVD------------------------------------- 1450
            + GADW +LP+ +V+L  G + +                                     
Sbjct: 1038 KGGADWRNLPNVRVQLPDGTMTEVLQYRYRTKKQKDGEPNRGVCACSVEKACDPNDRQSN 1097

Query: 1451 -LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             LIPWCLP+TA RHN W G++GRLDW G F T+ T+P+PMGK G   HPDQ+R+++VREC
Sbjct: 1098 TLIPWCLPHTADRHNNWAGVYGRLDWSGYFATTTTNPEPMGKQGRVIHPDQNRLISVREC 1157

Query: 1510 ARSQGFPDSYQFHGSIQHKH 1529
            ARSQGFPD  +F GS+  KH
Sbjct: 1158 ARSQGFPDKTKFFGSVTSKH 1177



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 31/261 (11%)

Query: 52  SQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTAR------ 105
           +Q++ +  K+ KR +  +D  +   +   ++ +     D YA++   +V LT+       
Sbjct: 12  AQETGDNTKKHKRTSTHSDKCKFCAQTLNQAVVYTNFPDDYAEE---SVALTSERLNVYN 68

Query: 106 -------QDGDRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREK 155
                  ++GD P+ ++  F ++D N    PL+   +     L I G I P+ +  D   
Sbjct: 69  GTENISFEEGDLPSHKITCFSIYDLNDHLCPLDTGLLQKEVYLHIGGYIKPIFDD-DPSP 127

Query: 156 EKGVRCEGFGRIESWSISGYEDGSPVIW-LSTDIADYDCLKPASSYKKYYELFFEKARAC 214
           E G+     G I  W I+G++ G  V+  + T+ A Y  ++P+  Y   ++   EK    
Sbjct: 128 ENGIATLDMGPIHEWFIAGFDGGEKVLLGIITNYAQYVLMEPSLEYAPIFKSLQEKTVLF 187

Query: 215 IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
             V + L   S  +   S +ELLA V  S          +  ++F++   +F+ +Q+   
Sbjct: 188 KFVIEFL--LSNFSRAPSYEELLAAVENS-------DNPLLTEEFLLQNAQFVCDQIHSF 238

Query: 275 D-ETSKKNDQKFAELPVLVAL 294
           D +    ND     +P +  L
Sbjct: 239 DLDAGDNNDMPLLTMPCVRTL 259


>gi|344240107|gb|EGV96210.1| DNA (cytosine-5)-methyltransferase 1 [Cricetulus griseus]
          Length = 1494

 Score =  378 bits (971), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 252/765 (32%), Positives = 393/765 (51%), Gaps = 97/765 (12%)

Query: 736  KKEITWEGECVR-KSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATG 794
            K  I+W G+ ++ +     Y+K  +  E + +G  V V  D+  +   +  V  ++E   
Sbjct: 724  KDRISWLGQPLKIEEKRTYYQKVCIDEETLEVGDCVSVIPDDSSKPLYLARVTALWEDKN 783

Query: 795  GCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIR--SVPWGHQH 852
            G ++FH      G+ TVLG T++  E+FL  +C D++L  I   V V  R  S  W  + 
Sbjct: 784  G-QMFHAHWFCAGTDTVLGATSDPLELFLVGECEDMQLSYIHSKVKVVYRAPSENWAMEG 842

Query: 853  RKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS---CHA 909
              D+          AE+  K    T +Y   L++ +  A F  P  +          C +
Sbjct: 843  GMDLETV----LPGAEDDGK----TYFY--QLWYNQDYARFESPPKTQPTQDNKHKFCLS 892

Query: 910  CGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDKAEGET 959
            C      + KE  KV  +          +S       Y + D VY+ P  FT++      
Sbjct: 893  CIRLGELRHKEMPKVLEQLDEVDGRLYCSSITKNGVVYRIGDSVYLPPEAFTFNLKLASP 952

Query: 960  FK-----------------------AGRNV-GLKPYVVCQLLEIIVPKEPKRAEVKSTQV 995
             K                        G N+   +PY + ++  I   K+  +A     ++
Sbjct: 953  LKRTKKEPVDENLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKAIHCGKKNGKANEADIKI 1012

Query: 996  KVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP------A 1047
            ++ +F+RP++   SA   Y +DI  +++S+E  ++    + G+C V  ++D+       +
Sbjct: 1013 RINKFYRPENTHRSASAFYGTDINLLFWSDEEAVVDFSDVQGRCTVEFEDDLLENLQDYS 1072

Query: 1048 CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK--LRYSSGSLDSEAASRRKKGKCIEGED 1105
               P  F   +F E  +  SK   +  P H +  L    G    +  ++ +  +  E E 
Sbjct: 1073 KGGPDRF---YFSEAYNAKSK-KFEDPPNHARNPLNKGKGKGKGKGNAKCQVSEPKEPET 1128

Query: 1106 ELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165
             +++ K         L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P 
Sbjct: 1129 AIKLPK---------LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPS 1179

Query: 1166 SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPP 1225
            S +   +CNV+L+ VM              A +L  SL +     LP  G V+ + GGPP
Sbjct: 1180 STVFTEDCNVLLKLVM--------------AGKLTNSLGQR----LPQKGDVEMLCGGPP 1221

Query: 1226 CQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
            CQGFSGMNRFN  T+S  +  ++++FLS+ DY++PR+FLLENVRNFVSF +    +LTL 
Sbjct: 1222 CQGFSGMNRFNSRTYSTFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLR 1281

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIML 1343
             L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++
Sbjct: 1282 CLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVV 1341

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN- 1402
             D    S +    +G P+R +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++R + 
Sbjct: 1342 DDKKFVSNITRLTSG-PYRTITVRDTMSDLPEIQNGASAPEISYSGEPQSWFQRQLRDSA 1400

Query: 1403 -MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG 1446
               +L DHI K+M+ L   R + IP+ PG+DW DLP+ +V LS G
Sbjct: 1401 YQPILRDHICKDMSPLVAARMKNIPRSPGSDWRDLPNIEVLLSDG 1445



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 156 EKGVRCEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARAC 214
           E GV  +  G I  W I+GY+ G   +I  ST  A+Y  ++P+  Y   + L  EK    
Sbjct: 447 EGGVNAKNLGPINEWWITGYDGGEKALIGFSTPFAEYILMEPSPDYAPIFGLMQEK---- 502

Query: 215 IEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGL 274
           I + K + +    N     ++L+  +  ++  S         +D ++   EF+ NQ+   
Sbjct: 503 IYISKIVVEFLRDNPHAIYEDLINKIQTTVPPS-ALNLNRFTEDSLLRHAEFVVNQVESY 561

Query: 275 DETSKKNDQKFAELPVLVAL 294
           ++    ++      P + AL
Sbjct: 562 NDAKDNDETPIFLSPCMRAL 581


>gi|340728437|ref|XP_003402531.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like, partial [Bombus terrestris]
          Length = 635

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 300/576 (52%), Gaps = 78/576 (13%)

Query: 970  PYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC--SDIREVYYSEETHL 1027
            P+ +  + EI               +KV + +RP++          +D+  VY+S+E   
Sbjct: 83   PFCIGYINEIYASTNDMLVAPSDINIKVNKLYRPENTHKYLTLMEQADLNMVYWSDEVCN 142

Query: 1028 IFVEAIAGKCEVRKKNDIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSG 1085
            I    + GKC +    ++        A   + F+    ++  + +  + P H     S G
Sbjct: 143  IKFIEVVGKCYLAYSENLNQTVDEWTAEGPNRFYFNEAYNAQEKTFNEPPYHA---ISIG 199

Query: 1086 SLDSEAASRRKKGKCIEGEDELEVEKQGGASQE-------NHLATLDIFAGCGGLSEGLQ 1138
                   + + KGK  E     E  K+   ++          L TLD+FAGCGGLSEGL 
Sbjct: 200  KSGKSKGNLKFKGKKTE-----ESXKRAFVNRPIEYNKILKKLRTLDVFAGCGGLSEGLY 254

Query: 1139 QSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198
            Q+GI+   WAIE EE A  A++LN+P + +  ++CN++L+ VM+  G   + V       
Sbjct: 255  QAGITENLWAIEKEEAAANAYRLNNPNATVFTDDCNILLKMVMDVSGXKTNKVGQK---- 310

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
                        LP  GQV+ + GGPPCQGFSGMNRFN   +S  +  +++++LS+ DY+
Sbjct: 311  ------------LPQKGQVELLCGGPPCQGFSGMNRFNSRQYSLFKNSLVVSYLSYCDYY 358

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
            +P +F++ENVRNFV+F +    +LTL  L+ MGYQ  FGIL+AG +G+ Q+R+R  I AA
Sbjct: 359  RPNFFIMENVRNFVTFERSMVLKLTLRCLVRMGYQCTFGILQAGNYGIPQTRRRIIILAA 418

Query: 1319 SPHDTLPEWPEPMHVFAAPELKI-MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVG 1377
            +P   LP++PEP HVF+    ++ +L DN +YS   S    APFR + VRD + DLP + 
Sbjct: 419  APGQILPQYPEPTHVFSKRTCRLSVLVDNKKYSTNCSWTESAPFRTINVRDALFDLPEIK 478

Query: 1378 NGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHD 1435
            NG +K  M Y ND +S FQ+RIRG     +L DHI KEM  L   R   IP   G+DW D
Sbjct: 479  NGWNKEEMSYTNDAISHFQRRIRGKQYQPLLRDHICKEMTPLVETRIAHIPVASGSDWRD 538

Query: 1436 LPDEKVKLSTG----------------------------------------QVVDLIPWC 1455
            LP+  V+LS G                                        Q   LIPWC
Sbjct: 539  LPNIVVRLSDGTCTKKLEYTHDDKKVGKSSTGAYRGVCSCCMGKQCDPTDRQFNTLIPWC 598

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
            LP+T  RHN W GL+GRL+W G F T+IT+P+PMGK
Sbjct: 599  LPHTGNRHNHWAGLYGRLEWSGFFSTTITNPEPMGK 634


>gi|348546033|ref|XP_003460483.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like, partial
            [Oreochromis niloticus]
          Length = 772

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 240/770 (31%), Positives = 390/770 (50%), Gaps = 84/770 (10%)

Query: 731  KSRSTKKEITWEGECVRKSGLA-LYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYM 789
            + + T+ ++TW GE +   G    Y+K  ++ E++ +G  V V  ++      +  +  M
Sbjct: 25   RKKQTQCKLTWIGESIHTEGKKQYYRKVSLNDELLEVGDCVSVSSEDPSIPLYLARITSM 84

Query: 790  FEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVP 847
            +E   G K+FH     RG  TVLG T++  E+ + ++C D+ L  +  K  V+    S  
Sbjct: 85   WEDNNG-KMFHAHWFLRGIDTVLGETSDPLELVIVDECEDMLLNYVQGKVNVMYKAPSNN 143

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMG-----L 902
            W  +   D      VD    E+  K      ++ +  Y  E   F + P  S        
Sbjct: 144  WFMEGGMD------VDLKVIEDDGK-----SFFYQFWYDTEYARFEMPPKTSPSEECKFK 192

Query: 903  GVGSCHACGTKESEKEKETFKV----HSKTSFVYGTA-----EYFVHDYVYISPHHFTWD 953
              GSC     +E   +   F+        T  +Y  A     ++ V D VY+ P  F + 
Sbjct: 193  FCGSCVRIKEREENDKPHVFEPLENEDHDTKALYAMACFKGEQFRVGDSVYLPPEAFNFS 252

Query: 954  KAEGETFK------------------------AGRNV-GLKPYVVCQLLEIIVPKEPK-R 987
                   K                         G N+   +P+ V ++ EI   +    +
Sbjct: 253  VKPASPVKRSHRKDDVDEDLYPEYYRKSSDYIKGSNLDAPEPFRVGRIKEIFCHRRSNGK 312

Query: 988  AEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDI 1045
             ++   ++++ +F+RP++     + +Y +DI ++Y+S+E   + +  + G+C+V    D+
Sbjct: 313  PDMSDVKLRLYKFYRPENTHKGVKASYHTDINQLYWSDEEVTVNMGDVLGRCQVEYAEDL 372

Query: 1046 PAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEG 1103
                 +  ++    F+    +     S +  P H +     G    +   + K       
Sbjct: 373  NESIQDYSSVGPDRFYFLEAYSAKAKSFEDPPNHARSTVHKGKGKGKGKGKGKGKASA-A 431

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            +++L+ + Q       +  TLD+F+GCGGLSEG  Q+GIS T WAIE  EPA +AF+LN+
Sbjct: 432  QEQLDSQPQPKPKVPKY-RTLDVFSGCGGLSEGFHQAGISETLWAIEMWEPAAQAFRLNN 490

Query: 1164 PESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
            P + +   +CNV+L+ VM              + E   SL +     LP  G V+ + GG
Sbjct: 491  PGTTVFTEDCNVLLKLVM--------------SGEKTNSLGQK----LPQKGDVEMLCGG 532

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPCQGFSGMNRFN  T+SK +  +++++LS+ DY++P++FLLENVRNFVSF      +LT
Sbjct: 533  PPCQGFSGMNRFNSRTYSKFKNSLVVSYLSYCDYYRPKFFLLENVRNFVSFKNSMVLKLT 592

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKI 1341
            L  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A  L +
Sbjct: 593  LRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPRYPEPLHVFAPRACSLSV 652

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
            ++ +  +Y +  +  NG  +R +TVRDT+ DLP + NGA+   + Y  +P SWFQ++IRG
Sbjct: 653  VVGEK-RYVSNVTRGNGGIYRTITVRDTMSDLPEIRNGAAALEISYNGEPQSWFQRQIRG 711

Query: 1402 N--MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
                 +L DHI K+M+ L   R + IP  PG+DW DLP+ +V+L  G + 
Sbjct: 712  TQYQPILRDHICKDMSALVEGRMRYIPLAPGSDWRDLPNIEVRLKDGTLT 761


>gi|159474758|ref|XP_001695492.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158275975|gb|EDP01750.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1663

 Score =  358 bits (920), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/537 (40%), Positives = 282/537 (52%), Gaps = 108/537 (20%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +DIFAG GGLS GL QSG++ T++A+E++  A  AF+ NHP   +   +C+V+L A M 
Sbjct: 1092 AMDIFAGAGGLSLGLHQSGVADTRYAVEFDTAAAAAFRANHPGVAVHRLDCSVMLTAAMV 1151

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINN------------------LPLPGQVDFINGGP 1224
            + G  ++CV+  E    A +L +                       LP PG VD + GGP
Sbjct: 1152 QAGARDNCVAAPEVMAEAEALLQRQQQQQQGQQQGQQEEGQPPPEALPGPGAVDLLVGGP 1211

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQGFSGMNR N S  S ++  MI A+LS+AD+ +PRYFLLENVRNF +   G+ FRL L
Sbjct: 1212 PCQGFSGMNRDNGSEGSVLKKSMIKAYLSYADFLRPRYFLLENVRNFAAHEGGRYFRLAL 1271

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI--- 1341
             SLL+MGYQVR G+L A   GV QSR R FIWAA P + LP WP+P+H F    L +   
Sbjct: 1272 RSLLDMGYQVRVGVLNAAHHGVPQSRSRTFIWAALPGERLPHWPQPLHAFDHTMLSLPVP 1331

Query: 1342 --------------MLSDN---------------------YQYSAVRSTANGAPFRAMTV 1366
                          +  DN                      +Y A    A GAP R +TV
Sbjct: 1332 VPAWVLEHPDCVAALQRDNANVTVQDRGGRGDGGGEGVATLRYWAASPAAGGAPLRPVTV 1391

Query: 1367 RDTIGDLPAVGNGAS---KTIMEYQNDPVSWFQKRIRG---------------------- 1401
             D + DL  V N      + +  Y + P + FQ+ IRG                      
Sbjct: 1392 WDAVSDLAPVDNADGNDWRRVAPYGSAPQTPFQRAIRGAGVGVDVEAALGEGAGGSDGGG 1451

Query: 1402 ---------------NMAVLTDHISKEMNELNLIRCQKIPK-RPGADWHDLPD------- 1438
                           + A+++DH+ K M   N  R   IPK  PGADWH L D       
Sbjct: 1452 GVAGAVSVALDESAASAALVSDHVPKRMQRENYTR--HIPKDTPGADWHSLYDVVAADPS 1509

Query: 1439 -EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFH 1497
             E + +  G+   L+P  L  +A RHN WKGL+GRL   G FPT IT+P P GKVG  FH
Sbjct: 1510 LELIHMPGGKTKPLVP-NLWKSADRHNGWKGLYGRLPRWGCFPTVITEPSPSGKVGQVFH 1568

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
            P QDRI+TVRE AR+QGFPDSY F G ++ ++ Q+GNAV P +  ALGR+L +AV +
Sbjct: 1569 PLQDRIMTVREYARAQGFPDSYVFSGKVKARYCQVGNAVAPPVGLALGRQLAQAVAA 1625


>gi|242037791|ref|XP_002466290.1| hypothetical protein SORBIDRAFT_01g005082 [Sorghum bicolor]
 gi|241920144|gb|EER93288.1| hypothetical protein SORBIDRAFT_01g005082 [Sorghum bicolor]
          Length = 196

 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 160/195 (82%), Positives = 181/195 (92%)

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
            APFR++TVRDT+GDLP V NGASK  ++Y ++PVSWFQK+IR +  +L DHISKEMNELN
Sbjct: 1    APFRSITVRDTVGDLPPVENGASKPTIQYGSEPVSWFQKKIRDSTVLLNDHISKEMNELN 60

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            LIRC+ IPKRPG DWH+LPDEKVKLSTGQ+VDLIPWCLPNTAKRHNQWKGL+GRLDWEGN
Sbjct: 61   LIRCKHIPKRPGCDWHELPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGN 120

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            FPTS+TDPQPMGKVGMCFHP+QDRI+TVRECARSQGFPDSY+F GSIQ KHRQIGNAVPP
Sbjct: 121  FPTSVTDPQPMGKVGMCFHPEQDRIVTVRECARSQGFPDSYRFAGSIQCKHRQIGNAVPP 180

Query: 1539 TLAFALGRKLKEAVE 1553
             LA+ALGRKLKEA++
Sbjct: 181  PLAYALGRKLKEAID 195


>gi|440794374|gb|ELR15535.1| C5 cytosine-specific DNA methylase superfamily protein [Acanthamoeba
            castellanii str. Neff]
          Length = 1562

 Score =  356 bits (913), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 273/852 (32%), Positives = 398/852 (46%), Gaps = 147/852 (17%)

Query: 783  IYFVEYMFE---ATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTV 839
            IY V YM E     GG    H   M +G  TVL       E+FL++ C  + +  + + V
Sbjct: 747  IYRVIYMCEEQGKKGGTMSVHARRMLKGRETVLQEVGGSEELFLSDICETIVVAHVVRKV 806

Query: 840  -VVDIRSVPWGHQHRKDIAN------ADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892
             VV +  VP  H    D         AD    A  + RK +  P     K          
Sbjct: 807  NVVFMPPVPQEHPTYDDKETYFYRFYADLETGAFEDARKHEVPPRTDEEKEG-------- 858

Query: 893  FILPVDSMGLGVGSCHACGTKESEKEKETFKVHSK-----------TSFVYGTAEYFVHD 941
              L +D+       CH+C TK  +++    +  +K            SF++    Y  HD
Sbjct: 859  --LVIDTKHF----CHSCFTKRRKEQAAKKRWLNKPIRVDGAKSYYNSFIFNGVTYHQHD 912

Query: 942  YVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFF 1001
            ++Y+ P+    D  E    K GR +   PY + Q+ ++    + +        V++RR F
Sbjct: 913  FIYLVPN----DMKEN-VRKEGREMPATPYEIHQITKLWSANQTR-------YVRLRRLF 960

Query: 1002 RPDDI--SAEKAYCSDIREVYYSEETHLIFVE--AIAGKCEVRKKNDIPACNAPAIFQ-H 1056
            R  ++      +   D RE+++S +   + ++   + GKC VR   DI    A  +   H
Sbjct: 961  RFGELPRKVRDSLNRDDRELFWSYQEKNVRLDDVPVEGKCLVRHIADIDDLEAYRLDDWH 1020

Query: 1057 IFFCEHLHDPSKGSLKQL-PAHIKL-RYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
             FF +  +D +   ++ L PA ++L + +  SLD++    R+K   +             
Sbjct: 1021 RFFVQTTYDAAAKLVEDLDPAEVELAKDTLASLDAQ----REKATLVR------------ 1064

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
              QE  LA +D+FAGCGG + GL       T  A+E+   A + F+ N P++ +L  + N
Sbjct: 1065 QKQEPILA-MDLFAGCGGFTHGLHACEYIKTTHAVEWVASAVKTFRNNRPDTNVLHGDIN 1123

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
             +L+  +E+    E+   T +   + A       N LP  G ++FI  GPPCQGF+GMNR
Sbjct: 1124 ALLKHAIER---HEEATKTGKKEAMEA-------NQLPPKGAINFIYCGPPCQGFTGMNR 1173

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG---------------QT 1279
            F ++    V   +I   LS  D+++P YFLLENVR  V F  G                 
Sbjct: 1174 FPKA--DDVLNSLIATTLSCVDFYRPTYFLLENVRGMVDFKLGGVQETKARMSGGIKLGV 1231

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
             +  L +L  MGYQ RF + +AG +GV QSR+R FIW      TLP++P+P H F  P  
Sbjct: 1232 VKFILRALTAMGYQARFSLQQAGMYGVPQSRRRFFIWGVLRGHTLPQFPQPTHTFPKPGS 1291

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV-------------GNGASKT--- 1383
              ML  N        TA  AP R ++V + I DLPA               +G  K    
Sbjct: 1292 LSMLLPNVGVRLEPVTARSAPHRYISVSEAISDLPAFEYDEPEEPKDERSRSGPHKDKWI 1351

Query: 1384 ---IMEYQNDPVSWFQK--RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA------- 1431
               + EY  +P S FQK  R R     L +H++K   E+N+ R   +PKRP         
Sbjct: 1352 GSEVREYDAEPESDFQKAMRRRTKDKKLYNHVTKTFTEMNVKRICNVPKRPAVGEPYPDN 1411

Query: 1432 ----DWHDLPDEKVKLSTGQVVDLIPWCL--PNT-AKRHNQWKGLFGRLDWEGNFPTSIT 1484
                D  DLP             L PWCL  PN+ A +H  W GL+GRLD++G F T++T
Sbjct: 1412 PPFYDHRDLPPS-----------LSPWCLSNPNSKAAKHRMWPGLYGRLDYQGYFQTALT 1460

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG---SIQHKHRQIGNAVPPTLA 1541
            +  PMGK G   HP Q R++TVRE ARSQGFPD ++F+    +++  HRQIGNAVPP LA
Sbjct: 1461 EVCPMGKQGKVLHPYQSRVITVREHARSQGFPDDFRFYAERDNLKDMHRQIGNAVPPRLA 1520

Query: 1542 FALGRKLKEAVE 1553
             AL R+L  A+E
Sbjct: 1521 SALSRQLARAIE 1532


>gi|304441893|gb|ADM34182.1| DNA methyltransferase 1 [Aplysia californica]
          Length = 405

 Score =  353 bits (907), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 45/371 (12%)

Query: 1226 CQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
            CQGFSGMNRFN   +SK +  +I ++LS+ DY++PR+FLLENVRNFVSF +    +L L 
Sbjct: 1    CQGFSGMNRFNSREYSKFKNSLIASYLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLALR 60

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIML 1343
             L+ MGYQ  FG+L+AG++GV+Q+R+RA I AA+P + LP +PEP H FA  A +L +M+
Sbjct: 61   CLVRMGYQCTFGVLQAGSYGVAQTRRRAIILAAAPGEKLPVYPEPQHTFAPRAMQLSVMV 120

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG-- 1401
             D    S +++  +  P+R +TVRD + DLP + NGA    + Y+ D  + FQ+ IRG  
Sbjct: 121  DDRKFNSNIKNMTS-TPYRTITVRDAMSDLPEIKNGAKAEEISYKGDAQTHFQRLIRGHQ 179

Query: 1402 NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------- 1446
            +  +L DH+ KEM+ L   R   IP  PG+DW DLP+ +++LS G               
Sbjct: 180  HQPILRDHVCKEMSPLVAARMTHIPLVPGSDWRDLPNLEIRLSDGSKAKKLLYTHPDKRN 239

Query: 1447 -------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
                                     Q   L PWCLP+T  RHN W GL+GRL+W+G F T
Sbjct: 240  GKGSNGQRXXVXACATXRVCDPLDRQFXTLXPWCLPHTGNRHNHWAGLYGRLEWDGFFST 299

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            ++T+P+PMGK G   HP+Q R+++VRECARSQGFPD+Y+F G+I  KHRQIGNAVPP + 
Sbjct: 300  TVTNPEPMGKXGRVLHPEQHRVVSVRECARSQGFPDTYRFFGNILDKHRQIGNAVPPPMG 359

Query: 1542 FALGRKLKEAV 1552
             A+G ++K+ +
Sbjct: 360  RAIGLEIKKCL 370


>gi|23306233|emb|CAD43080.2| DNA methyltransferase 1d [Paracentrotus lividus]
          Length = 1429

 Score =  342 bits (876), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 239/756 (31%), Positives = 375/756 (49%), Gaps = 85/756 (11%)

Query: 692  EANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSG- 750
            EA+E++ ++E   +   + ++EK   + R++   +      +  + ++TW G+ +  +  
Sbjct: 679  EADEND-IDEMDNSSNKENKDEKKAKKGRKLETPL-----KKKKRAKVTWLGDPIEVTEE 732

Query: 751  LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHT 810
             A YK A++  E +  G  VL+  D+  +   +  V YM++ + G  +FH      GS T
Sbjct: 733  RAYYKAAMLDDEKIENGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHRQWFVYGSET 792

Query: 811  VLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAE 868
            VLG T++  EVF  ++C+D  L  +  K TV+    S  W      D    D V +   E
Sbjct: 793  VLGETSDPLEVFPIDECQDTYLGSVNAKCTVISGAPSHDWSMIGGIDDPETDHVIK---E 849

Query: 869  ERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSK- 927
            +  K     ++Y   L   E     + P D       SC  C   E  +EKET +  +K 
Sbjct: 850  DDGKTFFYQKWYDPELARFEDYEVLMAPYDIPAHRFCSC--CLNNERAQEKETARPGAKL 907

Query: 928  -----------TSFVYGTAEYFVHDYVYISPHHFTWD----------------------- 953
                       +S  Y   E+ + D VY+ P  F+++                       
Sbjct: 908  EDQDDSSKVLYSSCHYKGNEFQIGDGVYLLPEAFSFNIKQKIVTKKPVSKKDVDEDLYPE 967

Query: 954  --KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK- 1010
              +   E  K       +P+ V +++ I   K        + +++V + +RP+D    + 
Sbjct: 968  NYRKSSEYVKGSNLECPEPFRVGKIISIYTTK-----SSSTVRLRVNKMYRPEDTHKGRT 1022

Query: 1011 -AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA--PAIFQHIFFCEHLHDPS 1067
             AY +D+  +Y+SEE  +  +E + GKC V    D+        A   H F+    +D  
Sbjct: 1023 AAYQADLNVLYWSEEEAVTELEVVQGKCSVVCAEDLNVSTTEYSAGGPHKFYFREAYDSE 1082

Query: 1068 KGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
            +   +  P+    +  S  +  +   + K     +   E E EK+   +  N L  LD+F
Sbjct: 1083 RKCFEDPPS----KSRSTRMKGKGKGKGKGKAKGKMAVEKEEEKESTETPFNKLKCLDVF 1138

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDA 1187
            AGCGGLSEG  Q+GI  + WAIE EEPA +A++LN+P S +  ++CN +LR VM+     
Sbjct: 1139 AGCGGLSEGFHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQ----G 1194

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM 1247
            E    T +               LP  G V+ + GGPPCQGFSGMNRFN   +SK +  +
Sbjct: 1195 EKTSRTGQ--------------KLPQKGDVELLCGGPPCQGFSGMNRFNSREYSKFKNSL 1240

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
            I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGYQ  FGIL+AG +GV 
Sbjct: 1241 ISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVP 1300

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
            Q+R+RA I AA+P + LP +PEP+HVF+  A  L +M+ +  +  +       AP+R +T
Sbjct: 1301 QTRRRAIILAAAPGEKLPFYPEPLHVFSTRACSLSVMIGEK-KIESNNQWCLSAPYRTIT 1359

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
            VRD++ DLP + NGA K  + Y  +P S FQK+IRG
Sbjct: 1360 VRDSMSDLPTINNGAQKLEISYDGEPQSDFQKKIRG 1395



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +R   ++ +F ++D++      +  M+E + +L+ SG + P+ +  +   E G+  +  G
Sbjct: 389 ERLQHKITNFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDD-NPSTEGGIPTKRIG 447

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G   +I  ST  A+Y  + P+  YK ++    EK    I + K L + 
Sbjct: 448 PINEWYTTGFDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEK----IYMSKILIEF 503

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++LL  V  ++    C R     +D ++   +F+  Q+   D+ + +++  
Sbjct: 504 LQNNVDPVYEDLLTQVETTVPPEGCNR---FTEDSLLRHAQFVVEQVESYDDAADRDEVL 560

Query: 285 FAELPVLVAL 294
              +P +  L
Sbjct: 561 LITMPCMRDL 570


>gi|6273357|gb|AAF06333.1| DNA methyltransferase 1 [Xenopus laevis]
          Length = 373

 Score =  333 bits (853), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/349 (44%), Positives = 223/349 (63%), Gaps = 43/349 (12%)

Query: 1247 MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGV 1306
            +++++LS+ DY++P++FLLENVRNFVSF      +LTL  L+ MGYQ  FG+L+AG +GV
Sbjct: 5    LVVSYLSYCDYYRPKFFLLENVRNFVSFKSSMVLKLTLRCLVRMGYQCTFGVLQAGQYGV 64

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQYSAVRSTANGAPFRAMT 1365
            +Q+R+RA + AA+P + LP +PEP+HVFA     + ++ D  +Y +  +  + + FR +T
Sbjct: 65   AQTRRRAIVLAAAPGEKLPMFPEPLHVFAPRACSLGVIVDEKKYVSNITRTSSSLFRTIT 124

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNELNLIRCQ 1423
            VRDT+ DLP + NGAS   + Y  +P SWFQ++IRG+    +L DHI K+++ L   R +
Sbjct: 125  VRDTMSDLPEIRNGASALEISYNGEPQSWFQRQIRGSQYQPILRDHICKDLSALVAARMR 184

Query: 1424 KIPKRPGADWHDLPDEKVKLSTG------------------------------------- 1446
             IP  PG+DW DLP+ +V+LS G                                     
Sbjct: 185  HIPLAPGSDWRDLPNMEVRLSDGTTSRKLRYSHHDKKNGRSSNGALRGVCSCAEGKPCDP 244

Query: 1447 ---QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRI 1503
               Q   LIPWCLP+T  RHN W GL+GRL+W+G   T++T+P+PMGK G   HP+Q R+
Sbjct: 245  ADRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFLSTTVTNPEPMGKQGRVLHPEQHRV 304

Query: 1504 LTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            ++VRECARSQGFPD+Y+  G+I  KHRQ+GNAVPP L+ A+G ++K  V
Sbjct: 305  VSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLSKAIGLEIKACV 353


>gi|443724442|gb|ELU12454.1| hypothetical protein CAPTEDRAFT_222429 [Capitella teleta]
          Length = 1007

 Score =  333 bits (853), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 177/475 (37%), Positives = 258/475 (54%), Gaps = 60/475 (12%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E  L +LD+F+GCGGLS GL Q+G+S   WA+E +    EAFK N P+  +   +CN +L
Sbjct: 555  EAKLRSLDLFSGCGGLSLGLSQAGVSEACWAVERDPVIAEAFKRNFPKCCVYAADCNAML 614

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
             +++      E C  + +                PL G+VD I+ GPPCQG+S +N+F  
Sbjct: 615  GSILA----GESCDPSGQV--------------YPLKGEVDLISAGPPCQGYSLLNKFTS 656

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
            S   + +  +++  LSF DY+QP+YF++ENV  F +   G   +L +  LLE+GYQ RFG
Sbjct: 657  SEAYQFKNSLVVTALSFCDYYQPKYFVMENVSTFATHKGGNLLKLVIRCLLELGYQCRFG 716

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            IL+AG++GV QSR+R  + AA+    LP +PEP+H F      + + D  ++        
Sbjct: 717  ILQAGSYGVPQSRRRFILMAAAQGLLLPAFPEPIHAFPVAFCDVYI-DKRKFKPGLERIK 775

Query: 1358 GAPFRAMTVRDTIGDLPAV-GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
                R + +RD   DLP V  N  +   ++     + W       + +V+ DH  + ++ 
Sbjct: 776  IGHLRPLQIRDAFDDLPDVAANSTTAVHIKPTAKSLPW-----SSDSSVVFDHCVRPVDA 830

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------------------------ 1446
            LN  R   IP+  GADW DLP+  V LS G                              
Sbjct: 831  LNAARFAHIPRVRGADWRDLPNISVPLSDGSQTNILKYPFKGQIEGCVRKGVCACVEGKK 890

Query: 1447 -----QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQD 1501
                 Q   LIPW LP+TA+ +N WKG++GRLD  G F T IT+PQP  K G   HP +D
Sbjct: 891  CKSERQKNTLIPWWLPHTAQSNNHWKGVYGRLDERGCFRTIITNPQPGVKQGRVLHPSKD 950

Query: 1502 RILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            RI +VRECAR QGFPD Y F G+I+ ++ Q+GNAVPP LA A+G ++++++ S +
Sbjct: 951  RIASVRECARGQGFPDDYIFVGTIEKRYIQVGNAVPPPLAKAIGIEIRKSLISSQ 1005



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/420 (21%), Positives = 169/420 (40%), Gaps = 71/420 (16%)

Query: 646  PRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEEV---EEQ 702
            PR S+   V+ K++ M ATTT  + +++ + + +          A   + D EV   +++
Sbjct: 54   PRQSL---VIVKKEKMVATTTAAVRQLFSKDFKSLF-------GAATMSGDLEVIISDDE 103

Query: 703  GENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLA-LYKKAIVHG 761
            GE + D       +S   +         K+R    E+ W G  +R+   +  Y+ A V  
Sbjct: 104  GEEDGDAPPRSAQLSRNPRGH-------KNRMLAGEVEW-GPLLREDHCSSHYESATVDN 155

Query: 762  EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK-LFHGIIMQRGSHTVLGNTANERE 820
              +S G  V +E D+  + P +  V  +FE     +   H   +   S T+L  T  + E
Sbjct: 156  VKISPGDYVQIEHDDSAKEPHLGRVISLFERQDSPEPQVHIHWLHYTSTTLLRETGKDNE 215

Query: 821  VFLA-NQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEY 879
            ++ + ++C+D++L  +   V V   S        +   N   V    ++ER         
Sbjct: 216  LYFSYDECQDVDLSSVMCRVNVTEVS--------QLTVNDSHVHYGMSDER--------L 259

Query: 880  YCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFV 939
            YC    + +    F  P         +C +C   ++ + KE+  + S     Y   EY +
Sbjct: 260  YCVEYVYNDTTGAFTSPAKPKKF---TCPSCAVLKARRLKESPSI-SDGILQYWQNEYSI 315

Query: 940  HDYVYISPHHFTWDKAEGETFK--------------------AGRNVGLKPYVVCQLLEI 979
              Y+++     T +K    T +                    +G    + P  + +LL I
Sbjct: 316  GCYMFVQ----TENKENSATLQDKEKVVANSKFPEQWRRQNDSGEPPRVAPLTIGRLLGI 371

Query: 980  IVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV 1039
                +    EV  T   ++RFFRP++ S EK +  DIR V+ S++     ++   G+C V
Sbjct: 372  HWADDDDAHEVVLT---LQRFFRPEETSLEKPWLKDIRLVFPSDQIFEARLDTTWGRCNV 428


>gi|405957557|gb|EKC23761.1| DNA (cytosine-5)-methyltransferase 1, partial [Crassostrea gigas]
          Length = 993

 Score =  331 bits (849), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 223/727 (30%), Positives = 356/727 (48%), Gaps = 101/727 (13%)

Query: 738  EITWEGECVRKSGL-ALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC 796
            +++W G+ V + G  + Y   +++ E VS G  + ++ +++     I  V Y++E   G 
Sbjct: 308  KLSWVGDPVLQDGKNSYYSAVLINDEKVSFGDFISIKPEDVAIPVYIAMVNYLWENASGN 367

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQ-DIKQTVVVDIRSVP-WGHQHRK 854
            K+ H   + RGS T+LG T +  E+F  + C  ++L+  +++  V+   + P W  Q   
Sbjct: 368  KMCHVQWLCRGSDTILGETGDPLELFFVDDCESIKLESSLRKVKVLHKETSPDWFMQG-- 425

Query: 855  DIANADKVDRARAEERKKKGLPTE-----YYCKSLYWPERGAFFILPVDSMGLGVGS--- 906
                          E  +K  P E     +Y +  Y P+   F  +P             
Sbjct: 426  ------------GIEHPEKDFPIEDDSNTFYYQKWYDPDLARFEDIPTSDKPKDQRHHKF 473

Query: 907  CHACGTKESEKEKETFKV--------HSKTSFVYGTA-----EYFVHDYVYISPHHFTWD 953
            C  C   +  ++KE   +         S T   Y +      EY V D  Y+ P  F ++
Sbjct: 474  CLTCDRLDQLRKKENPSLGPEIESEDSSATRTFYSSVGRDGFEYKVGDCCYMEPSAFGFN 533

Query: 954  KAE------------------------GETFKAGRNVGLKPYVVCQLLEIIVPKE--PKR 987
              +                        G+  K       +P+ V ++L I   K    K 
Sbjct: 534  VKQPPAKKVKTERKEVDEELYPEGYRKGDYIKGSNESVPEPFRVGRILAIFCKKSSGSKI 593

Query: 988  AEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDI 1045
            A +   +VKV +F+RP+D        Y +D+  +Y+S+E   +  + + GKC+V    ++
Sbjct: 594  ANLGEIKVKVAKFYRPEDTHKGPSAGYHTDMNMLYWSDEEATVDFKLVKGKCQVTYSENL 653

Query: 1046 PA-----CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKC 1100
             +     C         +F E  +D      ++ P   ++    G    +   +      
Sbjct: 654  RSLEEYLCGG---LDRFYFTE-AYDSETKMFEEPPRQARVSGGKGKGKGKGKGKSSGP-- 707

Query: 1101 IEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160
               E+E    K+        L TLD+FAGCGG+SEG  Q+GI+ + WAIE EEPAG+AF+
Sbjct: 708  -SAEEETTEPKK---PTYRRLRTLDVFAGCGGISEGFHQAGIAESCWAIEKEEPAGQAFR 763

Query: 1161 LNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFI 1220
            LN+P   +  ++CNV+L+ VME  G+ ++                 +   LP  G V+ +
Sbjct: 764  LNNPGCTVFTDDCNVLLKLVME--GEKQN----------------EMGQKLPQKGDVELL 805

Query: 1221 NGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280
             GGPPCQGFSGMNRFN   +S+ +  +I ++LS+ DY++PR+FLLENVRNFVSF +    
Sbjct: 806  CGGPPCQGFSGMNRFNSREYSRFKNSLIASYLSYCDYYRPRFFLLENVRNFVSFKRSMVL 865

Query: 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELK 1340
            +L L  L  MGYQ  FG+L+AG++GV Q+R+RA I AA+P + LP +PEP HVFA   ++
Sbjct: 866  KLALRCLTTMGYQCTFGVLQAGSYGVPQTRRRAIILAAAPGEKLPFFPEPQHVFAPRAMQ 925

Query: 1341 IMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK-R 1398
            + +  D+ ++ +  +    APFR +TVRDT+ DLP + NGA    + YQ DP S FQ+ R
Sbjct: 926  LSVQVDDKKFMSNITRMESAPFRTITVRDTMSDLPEIRNGAKAEEISYQGDPQSHFQRIR 985

Query: 1399 IRGNMAV 1405
            + G+ AV
Sbjct: 986  LSGHWAV 992



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 93/187 (49%), Gaps = 16/187 (8%)

Query: 114 RLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFGRIESW 170
           ++ +F ++D+N    P +   I+    L+ SG++ P+ +  +   E G+R    G I  W
Sbjct: 3   KITNFSVYDKNTHLCPFDTGLIEKNVFLYFSGVVKPIYDE-NSSPEGGIRACKMGPINEW 61

Query: 171 SISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNS 229
             +G++ G + +I  ST  A+Y  + P+ +YK Y +   EK    I + K + +    N 
Sbjct: 62  WTAGFDGGENALIGFSTAYAEYILMSPSEAYKPYMDTMREK----IHMSKVVIEFMQNNQ 117

Query: 230 DCSIDELLAGVVRSMSGSKCFRGGVS--IKDFVISQGEFIFNQLIGLDETSKKNDQKFAE 287
           + + ++LL  +  ++  +     G+S   +D ++   +F+ +Q+   DE +++++     
Sbjct: 118 EATYEDLLNKIQTTVPPT-----GLSSLTEDSLLRHAQFVLDQVQSYDEAAEEDEGLLIT 172

Query: 288 LPVLVAL 294
            P + AL
Sbjct: 173 TPCMRAL 179


>gi|385139885|gb|AFI41915.1| Met1-type cytosine DNA-methyltransferase, partial [Betula
            platyphylla]
          Length = 169

 Score =  319 bits (817), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/169 (93%), Positives = 164/169 (97%)

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
            INNCNVILRAVMEKCGDA+DC+STSEAAELAA+L E  INNLPLPGQVDFINGGPPCQGF
Sbjct: 1    INNCNVILRAVMEKCGDADDCISTSEAAELAAALKEKDINNLPLPGQVDFINGGPPCQGF 60

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            SGMNRFNQSTWSKVQCEMILAFLSFADYF+P+YFLLENVRNFVSFNKGQTFRLTLASLLE
Sbjct: 61   SGMNRFNQSTWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVSFNKGQTFRLTLASLLE 120

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
            MGYQVRFGILEAGAFGVSQSRKRAFIWAASP + LPEWPEPMHVFAAPE
Sbjct: 121  MGYQVRFGILEAGAFGVSQSRKRAFIWAASPEEILPEWPEPMHVFAAPE 169


>gi|23306232|emb|CAD43079.1| DNA methyltransferase 1c [Paracentrotus lividus]
          Length = 1375

 Score =  317 bits (812), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 226/731 (30%), Positives = 359/731 (49%), Gaps = 85/731 (11%)

Query: 692  EANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSG- 750
            EA+E++ ++E   +   + ++EK   + R++   +      +  + ++TW G+ +  +  
Sbjct: 679  EADEND-IDEMDNSSNKENKDEKKAKKGRKLETPL-----KKKKRAKVTWLGDPIEVTEE 732

Query: 751  LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHT 810
             A YK A++  E +  G  VL+  D+  +   +  V YM++ + G  +FH      GS T
Sbjct: 733  RAYYKAAMLDDEKIENGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHRQWFVYGSET 792

Query: 811  VLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAE 868
            VLG T++  EVF  ++C+D  L  +  K TV+    S  W      D    D V +   E
Sbjct: 793  VLGETSDPLEVFPIDECQDTYLGSVNAKCTVISGAPSHDWSMIGGIDDPETDHVIK---E 849

Query: 869  ERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSK- 927
            +  K     ++Y   L   E     + P D       SC  C   E  +EKET +  +K 
Sbjct: 850  DDGKTFFYQKWYDPELARFEDYEVLMAPYDIPAHRFCSC--CLNNERAQEKETARPGAKL 907

Query: 928  -----------TSFVYGTAEYFVHDYVYISPHHFTWD----------------------- 953
                       +S  Y   E+ + D VY+ P  F+++                       
Sbjct: 908  EDQDDSSKVLYSSCHYKGNEFQIGDGVYLLPEAFSFNIKQKIVTKKPVSKKDVDEDLYPE 967

Query: 954  --KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK- 1010
              +   E  K       +P+ V +++ I   K        + +++V + +RP+D    + 
Sbjct: 968  NYRKSSEYVKGSNLECPEPFRVGKIISIYTTK-----SSSTVRLRVNKMYRPEDTHKGRT 1022

Query: 1011 -AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA--PAIFQHIFFCEHLHDPS 1067
             AY +D+  +Y+SEE  +  +E + GKC V    D+        A   H F+    +D  
Sbjct: 1023 AAYQADLNVLYWSEEEAVTELEVVQGKCSVVCAEDLNVSTTEYSAGGPHKFYFREAYDSE 1082

Query: 1068 KGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
            +   +  P+    +  S  +  +   + K     +   E E EK+   +  N L  LD+F
Sbjct: 1083 RKCFEDPPS----KSRSTRMKGKGKGKGKGKAKGKMAVEKEEEKESTETPFNKLKCLDVF 1138

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDA 1187
            AGCGGLSEG  Q+GI  + WAIE EEPA +A++LN+P S +  ++CN +LR VM+     
Sbjct: 1139 AGCGGLSEGFHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQ----G 1194

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM 1247
            E    T +               LP  G V+ + GGPPCQGFSGMNRFN   +SK +  +
Sbjct: 1195 EKTSRTGQ--------------KLPQKGDVELLCGGPPCQGFSGMNRFNSREYSKFKNSL 1240

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
            I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGYQ  FGIL+AG +GV 
Sbjct: 1241 ISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVP 1300

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
            Q+R+RA I AA+P + LP +PEP+HVF+  A  L +M+ +  +  +       AP+R +T
Sbjct: 1301 QTRRRAIILAAAPGEKLPFYPEPLHVFSTRACSLSVMIGEK-KIESNNQWCLSAPYRTIT 1359

Query: 1366 VRDTIGDLPAV 1376
            VRD++ DLP +
Sbjct: 1360 VRDSMSDLPTI 1370



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +R   ++ +F ++D++      +  M+E + +L+ SG + P+ +  +   E G+  +  G
Sbjct: 389 ERLQHKITNFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDD-NPSTEGGIPTKRIG 447

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G   +I  ST  A+Y  + P+  YK ++    EK    I + K L + 
Sbjct: 448 PINEWYTTGFDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEK----IYMSKILIEF 503

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++LL  V  ++    C R     +D ++   +F+  Q+   D+ + +++  
Sbjct: 504 LQNNVDPVYEDLLTQVETTVPPEGCNR---FTEDSLLRHAQFVVEQVESYDDAADRDEVL 560

Query: 285 FAELPVLVAL 294
              +P +  L
Sbjct: 561 LITMPCMRDL 570


>gi|67970373|dbj|BAE01529.1| unnamed protein product [Macaca fascicularis]
          Length = 493

 Score =  316 bits (810), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 185/492 (37%), Positives = 271/492 (55%), Gaps = 65/492 (13%)

Query: 937  YFVHDYVYISPHHFTWDKAEGETFKAGRNVGL------------------------KPYV 972
            Y V D VY+ P  FT++       K  R   +                        +PY 
Sbjct: 32   YRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYR 91

Query: 973  VCQLLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIF 1029
            + ++ EI  PK+   R      +++V +F+RP++   S   +Y +DI  +Y+S+E  ++ 
Sbjct: 92   IGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVD 151

Query: 1030 VEAIAGKCEVRKKNDIPAC------NAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYS 1083
             +A+ G+C V    D+P C        P  F   +F E  +  SK S +  P H +   +
Sbjct: 152  FKAVQGRCTVEYGEDLPECVQVYSMGGPNRF---YFLEAYNAKSK-SFEDPPNHARSPGN 207

Query: 1084 SGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGIS 1143
             G    +   + K   C   E E+E++          L TLD+F+GCGGLSEG  Q+GIS
Sbjct: 208  KGKGKGKGKGKPKSQACEPSEPEMEIKLP-------KLRTLDVFSGCGGLSEGFHQAGIS 260

Query: 1144 STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASL 1203
             T WAIE  +PA +AF+LN+P S +   +CN++L+ VM              A E   S 
Sbjct: 261  DTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVM--------------AGETTNSR 306

Query: 1204 DENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYF 1263
             +     LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+F
Sbjct: 307  GQR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFF 362

Query: 1264 LLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT 1323
            LLENVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + 
Sbjct: 363  LLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEK 422

Query: 1324 LPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
            LP +PEP+HVFA  A +L +++ D    S +   ++G PFR +TVRDT+ DLP V NGAS
Sbjct: 423  LPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGAS 481

Query: 1382 KTIMEYQNDPVS 1393
               + Y  +P S
Sbjct: 482  ALEISYNGEPQS 493


>gi|194698662|gb|ACF83415.1| unknown [Zea mays]
          Length = 163

 Score =  302 bits (773), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 134/154 (87%), Positives = 145/154 (94%)

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
            M VL DHISKEMNELNLIRCQ IPKRPG DWHDLPDEKVKLS GQ+ DLIPWCLPNTAKR
Sbjct: 1    MMVLNDHISKEMNELNLIRCQHIPKRPGCDWHDLPDEKVKLSNGQMADLIPWCLPNTAKR 60

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
            HNQWKGL+GRLDWEGNFPTS+TDPQPMGKVGMCFHPDQDRI+TVRECARSQGFPDSY+F 
Sbjct: 61   HNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDSYEFA 120

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            G+IQ+KHRQIGNAVPP LA+ALGRKLKEAV+ ++
Sbjct: 121  GNIQNKHRQIGNAVPPPLAYALGRKLKEAVDKRQ 154


>gi|23306234|emb|CAD43089.1| DNA methyltransferase 1e [Paracentrotus lividus]
          Length = 1335

 Score =  298 bits (764), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 336/689 (48%), Gaps = 82/689 (11%)

Query: 692  EANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSG- 750
            EA+E++ ++E   +   + ++EK   + R++   +      +  + ++TW G+ +  +  
Sbjct: 679  EADEND-IDEMDNSSNKENKDEKKAKKGRKLETPL-----KKKKRAKVTWLGDPIEVTEE 732

Query: 751  LALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHT 810
             A YK A++  E +  G  VL+  D+  +   +  V YM++ + G  +FH      GS T
Sbjct: 733  RAYYKAAMLDDEKIENGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHRQWFVYGSET 792

Query: 811  VLGNTANEREVFLANQCRDLELQDI--KQTVVVDIRSVPWGHQHRKDIANADKVDRARAE 868
            VLG T++  EVF  ++C+D  L  +  K TV+    S  W      D    D V +   E
Sbjct: 793  VLGETSDPLEVFPIDECQDTYLGSVNAKCTVISGAPSHDWSMIGGIDDPETDHVIK---E 849

Query: 869  ERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSK- 927
            +  K     ++Y   L   E     + P D       SC  C   E  +EKET +  +K 
Sbjct: 850  DDGKTFFYQKWYDPELARFEDYEVLMAPYDIPAHRFCSC--CLNNERAQEKETARPGAKL 907

Query: 928  -----------TSFVYGTAEYFVHDYVYISPHHFTWD----------------------- 953
                       +S  Y   E+ + D VY+ P  F+++                       
Sbjct: 908  EDQDDSSKVLYSSCHYKGNEFQIGDGVYLLPEAFSFNIKQKIVTKKPVSKKDVDEDLYPE 967

Query: 954  --KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK- 1010
              +   E  K       +P+ V +++ I   K        + +++V + +RP+D    + 
Sbjct: 968  NYRKSSEYVKGSNLECPEPFRVGKIISIYTTK-----SSSTVRLRVNKMYRPEDTHKGRT 1022

Query: 1011 -AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA--PAIFQHIFFCEHLHDPS 1067
             AY +D+  +Y+SEE  +  +E + GKC V    D+        A   H F+    +D  
Sbjct: 1023 AAYQADLNVLYWSEEEAVTELEVVQGKCSVVCAEDLNVSTTEYSAGGPHKFYFREAYDSE 1082

Query: 1068 KGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
            +   +  P+    +  S  +  +   + K     +   E E EK+   +  N L  LD+F
Sbjct: 1083 RKCFEDPPS----KSRSTRMKGKGKGKGKGKAKGKMAVEKEEEKESTETPFNKLKCLDVF 1138

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDA 1187
            AGCGGLSEG  Q+GI  + WAIE EEPA +A++LN+P S +  ++CN +LR VM+     
Sbjct: 1139 AGCGGLSEGFHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQ----G 1194

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM 1247
            E    T +               LP  G V+ + GGPPCQGFSGMNRFN   +SK +  +
Sbjct: 1195 EKTSRTGQ--------------KLPQKGDVELLCGGPPCQGFSGMNRFNSREYSKFKNSL 1240

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
            I ++LS+ DY++PR+FLLENVRNFVS+ K    +L L  L+ MGYQ  FGIL+AG +GV 
Sbjct: 1241 ISSYLSYCDYYRPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVP 1300

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
            Q+R+RA I AA+P + LP +PEP+HVF+ 
Sbjct: 1301 QTRRRAIILAAAPGEKLPFYPEPLHVFST 1329



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 109 DRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVRCEGFG 165
           +R   ++ +F ++D++      +  M+E + +L+ SG + P+ +  +   E G+  +  G
Sbjct: 389 ERLQHKITNFCVYDKSTHICAFDRGMIEKNKELYFSGYVKPIYDD-NPSTEGGIPTKRIG 447

Query: 166 RIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKT 224
            I  W  +G++ G   +I  ST  A+Y  + P+  YK ++    EK    I + K L + 
Sbjct: 448 PINEWYTTGFDGGHKALIGFSTAFAEYIVMSPSEEYKPFWTAVQEK----IYMSKILIEF 503

Query: 225 SGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQK 284
              N D   ++LL  V  ++    C R     +D ++   +F+  Q+   D+ + +++  
Sbjct: 504 LQNNVDPVYEDLLTQVETTVPPEGCNR---FTEDSLLRHAQFVVEQVESYDDAADRDEVL 560

Query: 285 FAELPVLVAL 294
              +P +  L
Sbjct: 561 LITMPCMRDL 570


>gi|156549014|ref|XP_001607336.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI [Nasonia
            vitripennis]
          Length = 1682

 Score =  294 bits (753), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 248/957 (25%), Positives = 413/957 (43%), Gaps = 182/957 (19%)

Query: 700  EEQGENEEDDTEEEKLISEERQISCSV---AVQIKSRSTKKEITWEGE--CVRKSGLALY 754
            E Q  N+ED  +   L   +   S SV    + I S S   ++ W G+   V  SG   Y
Sbjct: 804  EIQEANDEDAKDSVNLSQLKGNSSISVFKKTINIFS-SFNAKLEWLGDPLIVEGSGNTFY 862

Query: 755  KKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGN 814
                   E V +G  VLV   +      +  + YM+E   G   FH  +   G  TVLG 
Sbjct: 863  AAVKHEEETVCVGDFVLVRSVDQSVPAQVVKIAYMWEDNVGLAHFHANLYWWGKDTVLGE 922

Query: 815  TANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKG 874
             A   E+F  N+C ++ +  I + + +D R +P               D +  E+ K   
Sbjct: 923  LARPNELFSINKCNNISVNCITERINIDERYMPRNQ------------DVSTDEDIKANN 970

Query: 875  LPTEYYCKSLYWPERGAFFIL--PVDSMGLGVG-SCHACGTKESEKEK-------ETFKV 924
            +    +C+  Y P  G+F  L  P +   L    SC  C  K    E+       E  K 
Sbjct: 971  I----FCEKSYDPSDGSFHDLTKPEEVSVLPTHRSCINCEGKHRRSERVEPRTVDELGKK 1026

Query: 925  HSKTSF---VYGTAEYFVHDYVYISPHHFTWD--------KAEG------------ETFK 961
               T +   +Y   EY V   VY+ P    +         K+ G            E ++
Sbjct: 1027 EEGTLYRAVIYKDEEYIVGSCVYLKPKSLYFQFPMLLDHAKSSGKISKKIDEEKYPELYR 1086

Query: 962  AGRNVGLK-------PYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC- 1013
               +  +        P+ +  + EI               +KV++ +RP++    +    
Sbjct: 1087 KAEDAVIDSKFDMPAPFDIGYITEIFT--------TDKLYIKVKKLYRPENTHRNEVLIK 1138

Query: 1014 -SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP------ACNAPAIFQHIFFCEHLHDP 1066
             +D+  +Y+S E   +    +  KC V    D        +   P  F   +F +  HD 
Sbjct: 1139 QNDMNMLYWSNEVCTVSFNYVVRKCYVAHIKDFSKSVEEWSNLGPDRF---YFMQMYHDK 1195

Query: 1067 SKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDI 1126
                ++                          + + G +++ ++        + + +L+I
Sbjct: 1196 KFTDIE--------------------------RNMYGCEDVPLDPPIDYPDVDAMTSLEI 1229

Query: 1127 FAGCGGLSEGLQQSGISST--KWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            FAGCGGLS GL++SG+      WAIE +  A   F+LN+P+  +L+ + +++L+  M+  
Sbjct: 1230 FAGCGGLSLGLRESGVIKKLGSWAIESDVDAANTFQLNNPDITVLVGHPDIVLKNAMK-- 1287

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
            G+ ED        +L           LP    V+F+    PC+ +  M        S   
Sbjct: 1288 GEFED-----SDGKL-----------LPRKDDVEFLCATLPCENYKTMTDITVFKHS--- 1328

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
               I  FLS+ DY++P  F+LE     +   +    +LTLA L+ MGYQV F +++ G +
Sbjct: 1329 --YIATFLSYCDYYKPSLFILEADEKLIK--RSFVLKLTLACLVSMGYQVTFDLMQVGCY 1384

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP--ELKIMLSDNYQYSAVRSTANGAPFR 1362
            G  Q+R+R+ +  A+P   LP++PE +HVF  P  EL I++ D+ +Y+        AP+R
Sbjct: 1385 GAPQNRRRSVLLGAAPDSVLPKFPERLHVFPKPLCELGIVI-DSKKYTQDTFWTESAPYR 1443

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM--AVLTDHISKEMNELNLI 1420
            ++TV+D + DLP      ++  M Y     S F K +R NM    + +H+ K++  L   
Sbjct: 1444 SVTVQDALIDLPTTKVAITEE-MNYDAKSTSLFSKIMRLNMLEPTVFNHVCKDLGPLVEC 1502

Query: 1421 RCQKIPKRPGADWHDLPDEKVKL--------------------------------STGQV 1448
            R  +IP   G+DW +LP+ +++L                                ++G+ 
Sbjct: 1503 RISQIPLAVGSDWRNLPNIEMQLKDESYAKKLIYNYDDVEAGKSSNGELRGVCSCASGER 1562

Query: 1449 VD--------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQ 1500
             D        LIPW L ++A+++  W G++ RL W+G F  +IT+PQP+G  G   HP Q
Sbjct: 1563 CDPRDRQHGCLIPWHLVHSARKNKHWAGIYSRLQWDGFFNGAITNPQPLGTQGPVLHPTQ 1622

Query: 1501 DRILTVRECARSQGFPDSYQFHG--SIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             R+++VRECAR+QGFPD +       I + +R IG A  P L  A+G ++  ++ ++
Sbjct: 1623 PRVVSVRECARAQGFPDEFVLPQKIGIHNMYRIIGRASSPFLGRAIGHEIARSLAAR 1679



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 12/195 (6%)

Query: 104 ARQDGDRPNRRLNDFILHDENGLPQPLE--MLEID-DLFISGLILPLQESSDREKEKGVR 160
           +R+D  R   ++  F ++  NG   P +  ++E D +++ SG + P+  S D   E GV 
Sbjct: 508 SREDT-RAYNKITSFSVYCNNGHLCPFDSGLIERDVEIYFSGYVKPIY-SDDPSIENGVP 565

Query: 161 CEGFGRIESWSISGYEDG-SPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYK 219
            + FG I  W  +G++ G  P + +ST+I DY  ++P+  YK +      K    I + K
Sbjct: 566 GKNFGPIVEWWSTGFDIGEQPTVAISTEIGDYILMEPSDEYKPFMHSVLIK----ILIGK 621

Query: 220 KLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSK 279
            + +        + ++LL  +  + S           +D ++    FI+ Q++  DET+K
Sbjct: 622 IVIEYLVYEPHATYEDLLNKLQSASSKYDILPNMT--EDVLLEYAPFIYLQVMSYDETAK 679

Query: 280 KNDQKFAELPVLVAL 294
            N+      P +  L
Sbjct: 680 LNEPLMLVAPCIRRL 694


>gi|2906004|gb|AAC03766.1| C5-DNA-methyltransferase [Ascobolus immersus]
          Length = 1356

 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 241/854 (28%), Positives = 372/854 (43%), Gaps = 194/854 (22%)

Query: 807  GSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRAR 866
            G  T+L   A+ RE+FL + C D    D+   V    +  P G +    +   + +    
Sbjct: 500  GCDTILQEMASRRELFLTDSC-DTVFADVIYGVA---KLTPLGAKDIPTVEFHESMATMM 555

Query: 867  AEERKKKGLPTEYYCKSLYWPERGAFFILP-VDSMGLGV-----------GSCHACGTK- 913
             E         E++ +  Y  + G+F  L  VD+  +G            G C  C  K 
Sbjct: 556  GE--------NEFFVRFKYNYQDGSFTDLKDVDAEQIGTLQPRVNTHRNPGYCSNCRIKY 607

Query: 914  -------------ESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETF 960
                         ++E E   F+  SK   +Y        ++VY+ P     +K  G TF
Sbjct: 608  DNERTGDKWIYENDTEGEPRLFR-SSKGWCIYA------QEFVYLQPV----EKQPGTTF 656

Query: 961  KAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR--PDDISAEKAYCSDIRE 1018
            + G       Y+               +E+  + V V    R   DD S   +Y SD R 
Sbjct: 657  RVG-------YI---------------SEINKSSVIVELLARVDDDDKSGHISY-SDPRH 693

Query: 1019 VYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIF----QHIFFCEHLHDPSKGSLKQL 1074
            +Y++     +  + I  KC V   +      AP ++    + +++  + ++  KG  + +
Sbjct: 694  LYFTGTDIKVTFDKIIRKCFVFHDSGDQKAKAPLMYGTLQRDLYY--YRYEKRKGKAELV 751

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLS 1134
            P          +L+             + E   ++E+ G  S +  L  LDIFAGCGGL+
Sbjct: 752  PVREIRSIHEQTLN-------------DWESRTQIERHGAVSGKK-LKGLDIFAGCGGLT 797

Query: 1135 EGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194
             GL  SG   TKW IE+   A     LN P++ +     NV+L   ++    +ED     
Sbjct: 798  LGLDLSGAVDTKWDIEFAPSAANTLALNFPDAQVFNQCANVLLSRAIQ----SED----E 849

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
             + ++   L   V+ +LP  G+VDFI GGPPCQGFSG+NR+ +   + ++  ++  FLS+
Sbjct: 850  GSLDIEYDLQGRVLPDLPKKGEVDFIYGGPPCQGFSGVNRYKKG--NDIKNSLVATFLSY 907

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQT---------------FRLTLASLLEMGYQVRFGIL 1299
             D+++PR+ LLENV+  ++   G +                +    +L+ M YQ R G++
Sbjct: 908  VDHYKPRFVLLENVKGLITTKLGNSKNAEGKWEGGISNGVVKFIYRTLISMNYQCRIGLV 967

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG- 1358
            ++G +GV QSR R    AA   + LP+ PEPMH F   + +  L    +Y    +T NG 
Sbjct: 968  QSGEYGVPQSRPRVIFLAARMGERLPDLPEPMHAFEVLDSQYALPHIKRY---HTTQNGV 1024

Query: 1359 APFRAMTVRDTIGDLP------------------AVGNGASKTI---------------- 1384
            AP   +T+ + + DLP                  A    + KTI                
Sbjct: 1025 APLPRITIGEAVSDLPKFQYANPGVWPRHDPYSSAKAQPSDKTIEKFSVSKATSFVGYLL 1084

Query: 1385 MEYQNDPVSWFQKRIRGNMA---------------VLTDHISKEMNELNLIRCQKIPKRP 1429
              Y + P S FQ+R+R  +                ++T H+++  N+    R   +P  P
Sbjct: 1085 QPYHSRPQSEFQRRLRTKLVPSDEPAEKTSLLTTKLVTAHVTRLFNKETTQRIVCVPMWP 1144

Query: 1430 GADWHDLPDEKVKLSTGQVVDLIPWCL--PNT-AKRHNQWKGLFGRLDWEGNFPTSITDP 1486
            GAD   LP E           + PWCL  PN+ A++H  W GLFGRL  E  F T++TD 
Sbjct: 1145 GADHRSLPKE-----------MRPWCLVDPNSQAEKHRFWPGLFGRLGMEDFFSTALTDV 1193

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH--------GSIQHKHRQIGNAVPP 1538
            QP GK G   HP Q R+ TVRE AR+QGFPD + F         G ++  HR IGNAVP 
Sbjct: 1194 QPCGKQGKVLHPTQRRVYTVRELARAQGFPDWFAFTDGDADSGLGGVKKWHRNIGNAVPV 1253

Query: 1539 TLAFALGRKLKEAV 1552
             L   +GR +  +V
Sbjct: 1254 PLGEQIGRCIGYSV 1267


>gi|110737925|dbj|BAF00900.1| DNA (cytosine-5)-methyltransferase [Arabidopsis thaliana]
          Length = 164

 Score =  288 bits (738), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/159 (79%), Positives = 140/159 (88%)

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            IRGN   LTDHI K MNELNLIRC+ IP RPGADWHDLP  KV LS G+V ++IP+CLPN
Sbjct: 1    IRGNTIALTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLSDGRVEEMIPFCLPN 60

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
            TA+RHN WKGL+GRLDW+GNFPTS+TDPQPMGKVGMCFHP+Q RILTVRECARSQGFPDS
Sbjct: 61   TAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRILTVRECARSQGFPDS 120

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
            Y+F G+I HKHRQIGNAVPP LAFALGRKLKEA+  K+S
Sbjct: 121  YEFAGNINHKHRQIGNAVPPPLAFALGRKLKEALHLKKS 159


>gi|2956677|emb|CAB09661.1| DNA-C5-methyltransferase [Ascobolus immersus]
          Length = 1336

 Score =  287 bits (735), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 240/854 (28%), Positives = 371/854 (43%), Gaps = 194/854 (22%)

Query: 807  GSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRAR 866
            G  T+L   A+ RE+FL + C D    D+   V    +  P G +    +   + +    
Sbjct: 500  GCDTILQEMASRRELFLTDSC-DTVFADVIYGVA---KLTPLGAKDIPTVEFHESMATMM 555

Query: 867  AEERKKKGLPTEYYCKSLYWPERGAFFILP-VDSMGLGV-----------GSCHACGTK- 913
             E         E++ +  Y  + G+F  L  VD+  +G            G C  C  K 
Sbjct: 556  GE--------NEFFVRFKYNYQDGSFTDLKDVDAEQIGTPQPRVNTHRNPGYCSNCRIKY 607

Query: 914  -------------ESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETF 960
                         ++E E   F+  SK   +Y        ++VY+ P     +K  G TF
Sbjct: 608  DNERTGDKWIYENDTEGEPRLFR-SSKGWCIYA------QEFVYLQPV----EKQPGTTF 656

Query: 961  KAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR--PDDISAEKAYCSDIRE 1018
            + G       Y+               +E+  + V V    R   DD S   +Y SD R 
Sbjct: 657  RVG-------YI---------------SEINKSSVIVELLARVDDDDKSGHISY-SDPRH 693

Query: 1019 VYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIF----QHIFFCEHLHDPSKGSLKQL 1074
            +Y++     +  + I  KC V   +      A  ++    + +++  + ++  KG  + +
Sbjct: 694  LYFTGTDIKVTFDKIIRKCFVFHDSGDQKAKAALMYGTLQRDLYY--YRYEKRKGKAELV 751

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLS 1134
            P          +L+             + E   ++E+ G  S +  L  LDIFAGCGGL+
Sbjct: 752  PVREIRSIHEQTLN-------------DWESRTQIERHGAVSGKK-LKGLDIFAGCGGLT 797

Query: 1135 EGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194
             GL  SG   TKWAIE+   A     LN P++ +     NV+L   ++    +ED     
Sbjct: 798  LGLDLSGAVDTKWAIEFAPSAANTLALNFPDAQVFNQCANVLLSRAIQ----SED----E 849

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
             + ++   L   V+ +LP  G+VDFI GGPPCQGFSG+NR+ +   + ++  ++  FLS+
Sbjct: 850  GSLDIEYDLQGRVLPDLPKKGEVDFIYGGPPCQGFSGVNRYKKG--NDIKNSLVATFLSY 907

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQT---------------FRLTLASLLEMGYQVRFGIL 1299
             D+++PR+ LLENV+  ++   G +                +    +L+ M YQ R G++
Sbjct: 908  VDHYKPRFVLLENVKGLITTKLGNSKNAEGKWEGGISNGVVKFIYRTLISMNYQCRIGLV 967

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG- 1358
            ++G +GV QSR R    AA   + LP+ PEPMH F   + +  L    +Y    +T NG 
Sbjct: 968  QSGEYGVPQSRPRVIFLAARMGERLPDLPEPMHAFEVLDSQYALPHIKRY---HTTQNGV 1024

Query: 1359 APFRAMTVRDTIGDLP------------------AVGNGASKTI---------------- 1384
            AP   +T+ + + DLP                  A    + KTI                
Sbjct: 1025 APLPRITIGEAVSDLPKFQYANPGVWPRHDPYSSAKAQPSDKTIEKFSVSKATSFVGYLL 1084

Query: 1385 MEYQNDPVSWFQKRIRGNMA---------------VLTDHISKEMNELNLIRCQKIPKRP 1429
              Y + P S FQ+R+R  +                ++T H+++  N+    R   +P  P
Sbjct: 1085 QPYHSRPQSEFQRRLRTKLVPSDDPAEEPSLLTTKLVTAHVTRLFNKETTQRIVCVPMWP 1144

Query: 1430 GADWHDLPDEKVKLSTGQVVDLIPWCL--PNT-AKRHNQWKGLFGRLDWEGNFPTSITDP 1486
            GAD   LP E           + PWCL  PN+ A++H  W GLFGRL  E  F T++TD 
Sbjct: 1145 GADHRSLPKE-----------MRPWCLVDPNSQAEKHRFWPGLFGRLGMEDFFSTALTDV 1193

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH--------GSIQHKHRQIGNAVPP 1538
            QP GK G   HP   R+ TVRE AR+QGFPD + F         G ++  HR IGNAVP 
Sbjct: 1194 QPCGKQGKVLHPTPRRVYTVRELARAQGFPDWFAFTDDDADSGLGGVKEWHRNIGNAVPV 1253

Query: 1539 TLAFALGRKLKEAV 1552
             L   +GR +  +V
Sbjct: 1254 PLGEQIGRCIGYSV 1267


>gi|426281416|gb|AFY23862.1| DNA methyltransferase 1, partial [Schistocerca gregaria]
          Length = 337

 Score =  283 bits (723), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 147/336 (43%), Positives = 206/336 (61%), Gaps = 45/336 (13%)

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            RFN   +S  +  +I+++LS+ DY++PRYF+LENVRNFVSF +    +LTL  L +MGYQ
Sbjct: 1    RFNSRQYSLFKNSLIVSYLSYCDYYRPRYFILENVRNFVSFKRSMVLKLTLRCLQKMGYQ 60

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSA 1351
              FGIL+AG +GV Q+R+RA I AA+P + LP +PEP H F+  A +L +++ +N ++++
Sbjct: 61   CTFGILQAGNYGVPQTRRRAXILAAAPGEVLPNFPEPTHXFSPRACQLSVVVDEN-KFTS 119

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDH 1409
                 + AP R +TVRD++ DLP + NG  K  M Y  +P++ FQ+ +RGN    +L DH
Sbjct: 120  NCKWVDSAPRRTITVRDSMSDLPEIRNGHKKEEMSYGGEPLTHFQRLVRGNQYQPILRDH 179

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG----------------------- 1446
            I KEM  +   R   IP   G+DW DLP+  V+LS G                       
Sbjct: 180  ICKEMAPIIEARIANIPTGVGSDWRDLPNIVVRLSDGSYTKKLIYTHHDKKNGRSSTGAL 239

Query: 1447 -----------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM 1489
                             Q   LIPWCLP+T  R N W GL+GRL+W+G F T++T+P+PM
Sbjct: 240  RGVCACATGKPCDPMDKQTNTLIPWCLPHTGNRXNHWAGLYGRLEWDGFFSTTVTNPEPM 299

Query: 1490 GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
            GK G   HP+Q R+++VRECARSQGFPD+Y+F GSI
Sbjct: 300  GKQGRVLHPEQTRVVSVRECARSQGFPDTYRFFGSI 335


>gi|161621504|gb|ABX75256.1| cytosine-5-methyltransferase [Malus x domestica]
          Length = 148

 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/148 (88%), Positives = 140/148 (94%)

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIEYEEPAG+AFKLNHPESL+ INNCNVILRAVMEKCGD +DC+STSEAAELA +LDE 
Sbjct: 1    WAIEYEEPAGDAFKLNHPESLVFINNCNVILRAVMEKCGDTDDCISTSEAAELAKALDEK 60

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            V N+LPLP QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA LSFADYF+P+YFLLE
Sbjct: 61   VKNDLPLPWQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILASLSFADYFRPKYFLLE 120

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
            NVRN VSFN+GQTFRLTLASLLEMGYQV
Sbjct: 121  NVRNLVSFNEGQTFRLTLASLLEMGYQV 148


>gi|341868929|gb|AEK98588.1| domain rearranged methyltransferase 1 [Vitis amurensis]
          Length = 137

 Score =  276 bits (707), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/137 (91%), Positives = 131/137 (95%)

Query: 1152 EEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNL 1211
            EEPAG+AFKLNHPESLM INNCNVILRAVMEKCGDA+DC+STSEAAELA SL E  INNL
Sbjct: 1    EEPAGDAFKLNHPESLMFINNCNVILRAVMEKCGDADDCLSTSEAAELATSLGEKDINNL 60

Query: 1212 PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
            PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF+PR+FLLENVRNF
Sbjct: 61   PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFRPRFFLLENVRNF 120

Query: 1272 VSFNKGQTFRLTLASLL 1288
            VSFNKGQTFRLT+A LL
Sbjct: 121  VSFNKGQTFRLTVALLL 137


>gi|109638623|ref|YP_656628.1| ORF120 [Ranid herpesvirus 2]
 gi|109138110|gb|ABG25588.1| ORF120 [Ranid herpesvirus 2]
          Length = 861

 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 242/467 (51%), Gaps = 70/467 (14%)

Query: 1119 NH--LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            NH  L T D F G GGLS GL+QSG+   KW I+ +  A   F  NH          N  
Sbjct: 421  NHRPLLTFDAFCGAGGLSLGLEQSGLCDVKWGIDTDAAALATFSKNH----------NFS 470

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
            + A  E   +  D        ++ A  +++     P PGQV+ + GGPPCQGFSG N F 
Sbjct: 471  VCAYHEPLENMLD--------KVVADPEQSY---YPRPGQVECLVGGPPCQGFSGCNFFP 519

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
            +   +  + +M++ +L   + + P+ F+LENV+NF     G  F+  L  LL + Y V  
Sbjct: 520  KGEKAGEKRQMMVEYLRMCEMYLPKLFILENVQNFTVQEDGAVFKAVLHKLLSLQYSVLC 579

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEW-PEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            G+++AG +G+ QSR+R  I AA     LP+  P  +H FA   L++  S   ++  +  T
Sbjct: 580  GVVQAGMYGLPQSRRRLLIVAARDDFPLPDMLPPQLHAFAPSALRLCNSTE-KFEPLHVT 638

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                 FR +T+R+ I DL    +  S           +WF +++R     L +H+++ ++
Sbjct: 639  VPI--FRTITLREAIMDLQNTKSTFSTG--------CTWFTRKMRAPKQ-LHNHVTRPLS 687

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD------------------------- 1450
              N  R ++IP  PGADW DLP+  VKL  GQV+                          
Sbjct: 688  LANQARIERIPYLPGADWRDLPNVSVKLPNGQVLHPLTYGEKGSVCPCGSGERCLKDVHK 747

Query: 1451 ---------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQD 1501
                     LIPW LP+TA+R++ W G +GRLDW G   T +T P P  K G   HP + 
Sbjct: 748  ANGTRPAETLIPWFLPHTAERNSNWVGCYGRLDWNGYVGTLLTSPDPAHKQGRLLHPSRQ 807

Query: 1502 RILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            RILTVRE AR QGFPD++ F G+I+  ++QIGNAVPP L+ A+G+++
Sbjct: 808  RILTVREYARIQGFPDTFIFQGAIEDTYKQIGNAVPPPLSCAVGQRI 854


>gi|395333804|gb|EJF66181.1| S-adenosyl-L-methionine-dependent methyltransferase [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1200

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 293/1161 (25%), Positives = 466/1161 (40%), Gaps = 219/1161 (18%)

Query: 490  FP-IYLSSIKE----WMIEFGSSMIF---ISIRTDLAWYRLGKPSKQYAPWYEPVLKTAR 541
            FP + LSSI E    W+ + G S      + + T+ AWY LG PS  YAP Y+       
Sbjct: 139  FPLVQLSSILEFSVHWVEKNGRSYSLDENVYLLTEHAWYILGSPSSSYAPHYKSFRAHHG 198

Query: 542  VAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISS--DPAAVERYVVVHGQIVLQ 599
            +   + + L E    S     + +    + +   H   SS    A   +  V +   VL 
Sbjct: 199  LFHILFSCLAEMPNASADKLLNHLPSQLKERHGAHPLCSSVSREALTSQPFVAYLTTVLT 258

Query: 600  LFAEYPDEQIKKCAFIIGLMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRK 659
            ++ E  D++           +++ +R      V +  + K      P A        +  
Sbjct: 259  IWWEARDQR-----------QQLFQR------VVRSPLVKHLYPALPEAFPATDAAEQAT 301

Query: 660  VMQATTTRLINRIWGEYYSNYSPEDGKEETACEA-------NEDEEVEEQGENEEDDTEE 712
            V+      +  +++ +        +G     C+A         D +V E GE  ED    
Sbjct: 302  VVTPRVGAIAQKLFSQPLRVVQMSEGVRNVPCQAVPIWPVHKGDPQVIEWGEGTEDPHIF 361

Query: 713  EKLISEERQISCSVAVQI------KSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSL 766
            + ++ +    S    V +      +++  K  ++    C  K+ LA  K           
Sbjct: 362  KSVVLDGTTYSAGDVVIVDAGEDERAKRAKHAVSASAWC--KNNLATKKW---------- 409

Query: 767  GSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQ 826
                  +++        YF E      G  KLFH   +Q GS T L   A+ R +F  N+
Sbjct: 410  ----FCKIN--------YFFEKYEPRLGWQKLFHAQWLQHGSQTFLQEAAHSRALFWLNE 457

Query: 827  CRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYW 886
            C DL+++ I     +     PW                  AE  +    P   +   L  
Sbjct: 458  CEDLQVECIYSHCNLQ----PW--------------PPGEAEPLEDDDGPENLFFTGLTL 499

Query: 887  PERGAFFI-LPVDSMGLGVGSCH-------ACGTKESEKEKETFKVHSKTSFVYGTAEYF 938
             +    FI L    +   +  C         CG    E  +E           Y   +Y 
Sbjct: 500  NDTDHSFIHLSTQEIEQALSYCTDELRPCIPCGLDALEAMQEQCIPLESGGVTYRGIDYH 559

Query: 939  VHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
            V+D+VY   HH            +G N          LL I    E      +   V+VR
Sbjct: 560  VNDFVY---HH-----------NSGGN----------LLHIGQVVEFSDLSCEEPMVQVR 595

Query: 999  RFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIF 1058
            RF R D +  +KA  SD R ++ ++    + ++A+ GK  V   +              F
Sbjct: 596  RFGRYDHVVKDKAIPSDNRRLFMTDVIISVKMKAVEGKAFVACPSSPWQREQWVKADDHF 655

Query: 1059 FCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQE 1118
            +C    D    SL   P  +++   +  +           +C     E   E++      
Sbjct: 656  YC----DLFAKSLT--PQSLEILQPTALVHC--------NRCYAAVLEEATEEELLLKTS 701

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            + L  L++FAG GGLS GL  SG   T+WA+E  E A + F+ NH  SL+   N + +L+
Sbjct: 702  SKLRGLELFAGAGGLSTGLDLSGFVETRWAVELSESACKTFQANHQSSLVYNQNTSTLLQ 761

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP--GQVDFINGGPPCQGFSGMNRFN 1236
             V          V T+E       + +   N  P+P  G+VDFI GGPPCQ FS +N   
Sbjct: 762  HV----------VDTAEGHHPRPLVSKTGTNLPPMPQRGEVDFIYGGPPCQSFSQINHNK 811

Query: 1237 Q--STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF-NKGQ-------------TF 1280
            +     S + C MI    S+ ++++P YFLLENVR  ++    GQ               
Sbjct: 812  KIDDPRSTLACNMI----SYVEFYRPMYFLLENVRGILNAPTDGQPRDQPLDRNICMGVV 867

Query: 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA-APEL 1339
            +  L SL  +GYQV F IL+AG +G  Q R+R     A     LP++P P H +  + + 
Sbjct: 868  KFILRSLTALGYQVHFRILQAGQYGTPQGRQRVIFLGARCDIPLPQFPTPQHDYPKSVQA 927

Query: 1340 KIMLSDNYQYSAVRSTANG---APFRAMTVRDTIGDLPA----------------VGNGA 1380
            K +      Y  +R T  G       A+T  + IGDLP                 V  G 
Sbjct: 928  KNLPDGGVLYPYLRPTGCGQACVSLPAITTEEAIGDLPKFDWKNPHLVIARSRQDVQKGQ 987

Query: 1381 SK----------------------TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
            ++                      T + Y   P+S FQ  +RG+  ++T H ++  +   
Sbjct: 988  ARLAEGIICVEAVPSPSRSLTGFPTPVAYPQPPLSRFQSWVRGDSDIVTYHYTRRWSPAV 1047

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R   +P +PGA+  DLP         +++ +  W  P+ + + + +  ++GR+D +G 
Sbjct: 1048 VERVVNVPIQPGANHADLP---------KILQIPCWLNPDGSSK-SAYTTVYGRIDNDGC 1097

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-------HGSIQHKHRQ 1531
            F T++T   P  K G   HP Q+RI+T+RE AR+QGFPDSYQF       +  +  + RQ
Sbjct: 1098 FMTALTTLAPNQKGGKVIHPTQNRIITIREAARAQGFPDSYQFLSIHDLPNRCLDDQARQ 1157

Query: 1532 IGNAVPPTLAFALGRKLKEAV 1552
            IGNAVP  LA ALG+++ +++
Sbjct: 1158 IGNAVPVPLAAALGKEIGKSL 1178


>gi|4704471|gb|AAD28102.1| cytosine DNA methyltransferase [Rattus norvegicus]
          Length = 349

 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 206/372 (55%), Gaps = 73/372 (19%)

Query: 1147 WAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN 1206
            WAIE  EPA +AF+LN+P + +   +CNV+L+ VM              A E+  SL + 
Sbjct: 2    WAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVM--------------AGEVTNSLGQR 47

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
                LP  G V+ + GGPPCQGFSGMNRFN  T+SK +  ++++FLS+ DY++PR+FLLE
Sbjct: 48   ----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLE 103

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NVRNFVSF +    +LTL  L+ MGYQ  FG+L+AG +GV+Q+R+RA I AA+P + LP 
Sbjct: 104  NVRNFVSFRRSMVLKLTLRCLVRMGYQCIFGVLQAGQYGVAQTRRRAIILAAAPGEKLPL 163

Query: 1327 WPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +PEP+HVFA  A +L +++ D    S +   ++G PFR +T+RDT+ DLP + NGAS   
Sbjct: 164  FPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITMRDTMSDLPEIQNGASAPE 222

Query: 1385 MEYQNDPVSWFQKRIRGNMA---VLTDHISKEMNELN----LIRCQKIPKRPGADWHDLP 1437
            + Y+     W    +    A    L  H      +++      R + IP  PG+DW DLP
Sbjct: 223  ISYK-----WRATVLVPEAAARVALPAHPQGPYPQVHERAGGCRMRHIPLSPGSDWRDLP 277

Query: 1438 DEKVKLSTGQVVD----------------------------------------LIPWCLP 1457
            + +V+L  G + +                                        LIPWCLP
Sbjct: 278  NIQVRLRDGVITNKLRYTFHDTKNGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLP 337

Query: 1458 NTAKRHNQWKGL 1469
            +T  RHN W GL
Sbjct: 338  HTGNRHNHWAGL 349


>gi|297788908|ref|XP_002862484.1| hypothetical protein ARALYDRAFT_920657 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297308026|gb|EFH38742.1| hypothetical protein ARALYDRAFT_920657 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 163

 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/174 (70%), Positives = 141/174 (81%), Gaps = 14/174 (8%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
             LATLDIFAGCGGLS GL              E+   +AFK NHP++ + ++NCNVILRA
Sbjct: 2    RLATLDIFAGCGGLSYGL--------------EKAVAQAFKQNHPDATVFVDNCNVILRA 47

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            +MEKCGD +DC+ST EAAELAA LD+N  + LPLPGQVDFINGGPPCQGFSGMNRF+  +
Sbjct: 48   IMEKCGDVDDCISTVEAAELAAKLDDNQKSTLPLPGQVDFINGGPPCQGFSGMNRFSDRS 107

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            WSKVQCEMILAFLSFADYF+P+YFLLENV+  VSFN GQTF+LT+ASLLEMGYQ
Sbjct: 108  WSKVQCEMILAFLSFADYFRPKYFLLENVKKIVSFNNGQTFQLTIASLLEMGYQ 161


>gi|341868925|gb|AEK98586.1| domain rearranged methyltransferase 1 [Vitis amurensis]
          Length = 137

 Score =  259 bits (663), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 125/137 (91%), Positives = 132/137 (96%)

Query: 1152 EEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNL 1211
            EEPAG+AFKLNHPESLM INNCNVILRAVMEKCGD +DC+STSEAAELAA+L E  INNL
Sbjct: 1    EEPAGDAFKLNHPESLMFINNCNVILRAVMEKCGDDDDCISTSEAAELAAALGEKDINNL 60

Query: 1212 PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
            PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF+P++FLLENVRNF
Sbjct: 61   PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFRPKFFLLENVRNF 120

Query: 1272 VSFNKGQTFRLTLASLL 1288
            VSFNKGQTFRLTLASLL
Sbjct: 121  VSFNKGQTFRLTLASLL 137


>gi|336379961|gb|EGO21115.1| hypothetical protein SERLADRAFT_417509 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1251

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 208/837 (24%), Positives = 338/837 (40%), Gaps = 200/837 (23%)

Query: 786  VEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFL-ANQCRDLELQDIKQTVVVDIR 844
            ++Y+FE + G K FH   +   S T+L  T +   +FL    C D++L+ I Q   +   
Sbjct: 459  IQYLFETSDGHKRFHAQWLAHSSKTLLQETGHPHALFLMTTDCEDIDLEAISQKCNIRQL 518

Query: 845  SV--------------------PWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSL 884
            SV                     W + H   + +    D ARA     +G P        
Sbjct: 519  SVEQDEPPENSFTQENDFFSGLAW-NTHDHSLIDLHPEDVARALAHCTEGEP-------- 569

Query: 885  YWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVY 944
                                  C +CG + S + + +        F + + +Y VHD+VY
Sbjct: 570  ----------------------CFSCGLRNSREAEASPSPLPGCGFTHYSVKYHVHDFVY 607

Query: 945  I---SPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFF 1001
            I   SP+   +D                   + Q++++       +A  +   + VR + 
Sbjct: 608  IKSCSPNILEYD-------------------IGQIVKV-------KAMERPPTITVRLYG 641

Query: 1002 RPDDISAE--------KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI 1053
            R DDI           +   SD R ++ + +   +  + I G C V   +     +    
Sbjct: 642  RYDDIVRRVRGKRDKFQVLGSDDRRLFKTSKFKAVTTDTIDGMCYVMHSSRDDTIDD--- 698

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKG---------KCIEGE 1104
                 +C+H +            H  +   + SL +++    ++          +C E  
Sbjct: 699  -----WCKHDN------------HFYVHQYANSLKTDSLEELEELEEKNFTYCKQCYEDR 741

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             +     +    +   L  L++F+G GGL  GL  SG   T+WA+E+   A   ++ NH 
Sbjct: 742  KQTLRHTEELLQKNEPLRGLELFSGAGGLGTGLDMSGFVETRWAVEFSPSAAMTYQANHS 801

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +     NV+L+  +       D         L       V+  +P PG VDFI GGP
Sbjct: 802  HTTVYNQCTNVLLQHAI-------DTHEGKNPKPLKGIHSGKVLPGMPKPGDVDFIYGGP 854

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN-KGQ----- 1278
            PCQ FSG+N + ++  + ++  +I   LS+ ++++P YFLLENV   +++  KG+     
Sbjct: 855  PCQSFSGINHWKKA--NDIRSTLICNMLSYVEFYRPSYFLLENVTGILNYRLKGRMEGRS 912

Query: 1279 --------TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
                      +  L SL  +GYQ+RF +L+AG +G  Q R+R   W A     LPE P P
Sbjct: 913  TVDGIEMGVVKFILRSLAALGYQIRFNVLQAGQYGAPQGRQRVIFWGAKRGLLLPELPIP 972

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANG----APFRAMTVRDTIGDLPAVG--------- 1377
             H F +   K+                     +PFRA+T+ D IGDLP            
Sbjct: 973  THGFVSRNYKVSTGTRLPRMTRSKDPTDDHLCSPFRAVTINDAIGDLPGFDWINPHLVYP 1032

Query: 1378 ---------------------------------NGASKTIMEYQNDPVSWFQKRIRGNMA 1404
                                              G SK  M Y + P++ +QK IRG+  
Sbjct: 1033 STSRDKTEKRTRETEHGILAFDAGYEDRRSQKYPGYSKP-MSYAHQPMTRYQKWIRGSQK 1091

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
             +    ++   +  + R   +P +P AD+H LP +K+ +            + +      
Sbjct: 1092 KVKYQYTRRFGDGIIERVINVPLKPNADYHSLP-KKLHMK-----------MFDKKGAKE 1139

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
            +++GL+GRLD E  F T++T   P  K G   HP Q RI+TVRECAR+QGFPDSY+F
Sbjct: 1140 RFRGLYGRLDGESQFKTALTTVAPNAKGGNLLHPSQKRIVTVRECARAQGFPDSYEF 1196


>gi|341868927|gb|AEK98587.1| domain rearranged methyltransferase 1 [Vitis amurensis]
          Length = 137

 Score =  257 bits (657), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 124/137 (90%), Positives = 131/137 (95%)

Query: 1152 EEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNL 1211
            EEPAG+AFKLNHPESLM INNCNVILRAVMEKCGD +DC+STSEAAELAA+L E  INNL
Sbjct: 1    EEPAGDAFKLNHPESLMFINNCNVILRAVMEKCGDDDDCISTSEAAELAAALGEKDINNL 60

Query: 1212 PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
            PLPGQVDFINGGPPCQGFSGMNRF QSTWSKVQCEMILAFLSFADYF+P++FLLENVRNF
Sbjct: 61   PLPGQVDFINGGPPCQGFSGMNRFTQSTWSKVQCEMILAFLSFADYFRPKFFLLENVRNF 120

Query: 1272 VSFNKGQTFRLTLASLL 1288
            VSFNKGQTFRLTLASLL
Sbjct: 121  VSFNKGQTFRLTLASLL 137


>gi|109638476|ref|YP_656741.1| ORF86 [Ranid herpesvirus 1]
 gi|4219046|gb|AAD12284.1| ORF86 [Ranid herpesvirus 1]
          Length = 739

 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 242/482 (50%), Gaps = 71/482 (14%)

Query: 1115 ASQENH-----LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            A++++H     L T+D+F+GCGGLS GL  +G+   +WAI+    A +A K NH  +  +
Sbjct: 265  ATKQSHVPIRPLHTMDVFSGCGGLSLGLCDAGLCDVRWAIDNWPVALDALKANHANATTI 324

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              +  V L A+ E                        + +  P  G+V+ + GGPPCQG+
Sbjct: 325  EADVGVALHALQE---------------------SGTMSHPWPAVGEVECMVGGPPCQGY 363

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            S +NRF  +  +K +  ++  +++ A Y++P   ++ENVRN  ++ KG+     +  L  
Sbjct: 364  SILNRFPHAHSTKAKNTLVNLYIALALYYKPAVLIMENVRNLTAYKKGRVLCGVVEMLRG 423

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP-MHVFA--APELKIMLSDN 1346
             GY V   IL+AG +GV Q+R+R  + A  P + LPE P P +H F+  A  L + +S +
Sbjct: 424  GGYDVMLNILQAGHYGVPQTRQRVIVVATLP-NALPEGPPPALHAFSHKACNLTLPMSPH 482

Query: 1347 YQYSAVR-----STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
                ++R     + +  APFR +T+ +    L      A  T     + P+SW+ + I  
Sbjct: 483  GAGRSMRYLCGPNPSAAAPFRTITLAEAFSGL------AEVTTSPCPSGPMSWYARAIAK 536

Query: 1402 NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK-------VKLSTGQVVD---- 1450
            +      H S+    +N  R   +P  PGADW D+P+E+       V LS  + +D    
Sbjct: 537  SEGAPCFHESRSFEWINNERIASVPAVPGADWRDIPNEERTSPDGTVTLSKLRYIDEKLG 596

Query: 1451 -------------------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK 1491
                               L+PW LP+ A   N + GL+GR D  G   T +T+P P  K
Sbjct: 597  IVCPCQLDKTAPHVKHGKTLVPWWLPHKASSKNGYAGLYGRNDMSGFLSTVLTNPMPGNK 656

Query: 1492 VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             G   HP Q R+L+ RE AR QGFPDSY   G++   ++Q+GNAVPP +A A+G ++  A
Sbjct: 657  QGRVLHPRQPRVLSARESARGQGFPDSYVLKGALLDVYKQVGNAVPPPMARAIGLRIASA 716

Query: 1552 VE 1553
            + 
Sbjct: 717  LR 718


>gi|440637271|gb|ELR07190.1| hypothetical protein GMDG_02417 [Geomyces destructans 20631-21]
          Length = 1233

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 231/851 (27%), Positives = 362/851 (42%), Gaps = 155/851 (18%)

Query: 789  MFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPW 848
            +F    G  + H      G  T L  TA  +E+FL ++C D+E+  I   V         
Sbjct: 394  IFANKRGDPMAHVRWFSHGGDTFLDETAGPKELFLLDRCDDIEMSTIVGKV--------- 444

Query: 849  GHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLY-----WPERGAFFILPVDSMGLG 903
                  ++    ++  +   +R KK  P  Y+ +  Y      P R        +++  G
Sbjct: 445  ------NVERCTQIGPSEESDRFKK--PNCYFYRFFYDDEETTPVRFEDASFHEENIKFG 496

Query: 904  ----VGSCHACGTKESEKEKETFKV-------HSKTSFVYGTAEYFVHDYVYISPHHFTW 952
                   C  C  +E  + + + +V        S TSF +   +Y ++D VY+ P     
Sbjct: 497  GTENSQQCFCCARREEIQHELSTRVTGTINEDRSATSFSHDGIKYKLNDCVYMLP----- 551

Query: 953  DKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPK--RAEVKSTQVKVRRFFRPDDI---- 1006
             +A  E    G+ + +K    C        K+P   R  V+   V V+   R DD     
Sbjct: 552  -RASDEPHTIGQIIHIK----CTGGFNWAVKDPSKLRDSVQGIHVTVQILRRYDDFNSDY 606

Query: 1007 -----SAEKAYCSDIREVYYSEETHLIFVE-AIAGKCEVRKKNDIPACNAPAIFQHIFFC 1060
                 S EK    D R +Y +     I V+  + GKC+V     I         +  F+ 
Sbjct: 607  RTEFKSGEKHAIRDSRRLYLTNRRKTIDVDDKLLGKCQVVHPGRINNLAKYKDLEDTFYV 666

Query: 1061 EHLH-DPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQEN 1119
                 D S G+  +    ++       L++E       G  + G +E   E    A  + 
Sbjct: 667  SGREPDCSDGTATRRTFDLE---DLEPLNTEDFHDSVDGNEMVGMEEKRHETFSKAGLK- 722

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL-R 1178
             L  +D+FAGCGGLS GL + G   T + IE++  A    K N P   +   N N +L R
Sbjct: 723  -LRAMDVFAGCGGLSSGLHEGGAVETLYGIEWDIDASRTLKRNFPHMKVYNENANTLLQR 781

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
            A+ E+ G A   +   +   +           +P  G +DF+ GGPPCQ FSG NR  ++
Sbjct: 782  AIQEERGTATGVMKDLQGKPMPP---------MPKRGDIDFLYGGPPCQDFSGCNRCPKA 832

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT----------------FRL 1282
              + ++  ++  FLSF D+++P+YFLLENVR  +    G T                 + 
Sbjct: 833  --NSIKNSLLTTFLSFVDHYRPKYFLLENVRGLLQHRLGSTQKKSGPGVQGGIQQGSVKF 890

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV---FAAPEL 1339
             L +L  +GY  +F +L+A   G  QSR+R F W A     LP +P+P HV    +AP  
Sbjct: 891  ILRALTSLGYSAQFHMLQAAEHGAPQSRRRVFFWGALLGRKLPLYPQPTHVCKGLSAP-- 948

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPA------------------------ 1375
                      +   +  + AP   +TV D I DLPA                        
Sbjct: 949  ----------TNTFTMGSTAPHNPVTVGDAISDLPAFDWRIKVPGEDRQARRQRELGIPT 998

Query: 1376 --VGNGASKTIME----YQNDPVSWFQKRIR----GNMAVLTDHISKEMNELNLIRCQKI 1425
              V  G    + +    Y   P++ FQ+ +R    GN  ++ +H++++     ++R  +I
Sbjct: 999  VDVPLGGKAPVGDNCSLYAYGPITEFQREVRRYVKGN--IVKNHVTRQWGSQTMLRLARI 1056

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT-AKRHNQWKGLFGRLDWEGNFPTSIT 1484
            P RP A+ +DLP E          D+   CL N  A + N +   + RLD++  F T +T
Sbjct: 1057 PMRPQANHNDLPLEH---------DMA--CLRNQRASKSNFYPNRYHRLDFKEQFQTCLT 1105

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK---HRQIGNAVPPTLA 1541
            +  P G+ G   HP Q RILTVRE AR+QGF D++ +  + Q     ++QIGNAV     
Sbjct: 1106 NVDPGGENGKILHPTQRRILTVREFARAQGFLDTFTWDPNAQSPSAMYKQIGNAVSLQHG 1165

Query: 1542 FALGRKLKEAV 1552
             ALG++L  A+
Sbjct: 1166 RALGKELFNAL 1176


>gi|341868931|gb|AEK98589.1| domain rearranged methyltransferase 1 [Vitis amurensis]
          Length = 137

 Score =  253 bits (646), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 113/137 (82%), Positives = 122/137 (89%)

Query: 1152 EEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNL 1211
            E PAGEAF LNHP++LM IN+CNVILRA+M  CGDA+DCVSTSEA ELA  LDE  I NL
Sbjct: 1    EGPAGEAFHLNHPDALMFINDCNVILRAIMSACGDADDCVSTSEATELAEKLDEKDIRNL 60

Query: 1212 PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
            P PGQVDFINGGPPCQGFSGMNRFNQ  WSK+QCEMILAFLSFADYF+PR+FLLENVRNF
Sbjct: 61   PRPGQVDFINGGPPCQGFSGMNRFNQGKWSKMQCEMILAFLSFADYFRPRFFLLENVRNF 120

Query: 1272 VSFNKGQTFRLTLASLL 1288
            V+FNKGQTFRLT ASLL
Sbjct: 121  VTFNKGQTFRLTPASLL 137


>gi|170088424|ref|XP_001875435.1| C5-DNA-methyltransferase [Laccaria bicolor S238N-H82]
 gi|164650635|gb|EDR14876.1| C5-DNA-methyltransferase [Laccaria bicolor S238N-H82]
          Length = 1309

 Score =  250 bits (639), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 276/1159 (23%), Positives = 455/1159 (39%), Gaps = 246/1159 (21%)

Query: 511  ISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSE 570
            I IRT  AWY LG PS  Y  ++ P     ++   + +  ++   ++  SF D +  +  
Sbjct: 265  IYIRTSYAWYILGFPSATYEDFFTPFWIRHQLVYRLASEARKHIHMTYQSFIDTLGGVYT 324

Query: 571  IKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHTKW 630
            +  D+H   +SD         + G+ + Q   E PD  IK  A+II ++ +++       
Sbjct: 325  L--DKHLPSASD---------LLGRDLTQSDLELPD--IK--AYIIAILLELQADFQITR 369

Query: 631  LVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETA 690
            +   + +    +       + P   S+R+VM     +  N +     + +        T 
Sbjct: 370  VPLIRSILDGAVE---DVGLSPTKKSRRRVMTKNRNQE-NEVLKHRETTFL-------TP 418

Query: 691  CEANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSG 750
              +   + + +      D  EE ++ ++      S+ V         +I W G+ + ++ 
Sbjct: 419  IVSQIAQHLFDGSLVASDPIEEMEVDNQ------SLKVHKTHHENPLKIVW-GQALGQN- 470

Query: 751  LALYKKAIVHGEVVSLGSAVLVE---------------VDELDQLPVIYFVEYMFE---A 792
            +  ++   V G    +G  V+V+               V++  Q     ++ + FE    
Sbjct: 471  VEFFENITVDGVRYQVGDVVMVQPEGGERAKHSSSQSTVNQYGQNWWFCYITHFFEHQSQ 530

Query: 793  TGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQH 852
             G  K+FHG     GS TVL  TA+ R +FL N C    +  I Q    + R +  G Q 
Sbjct: 531  KGRTKMFHGQWFVHGSETVLQETAHSRALFLLNSCDSNPINAIYQKC--NFRFLELGEQE 588

Query: 853  RKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS--CHAC 910
              D    D  D               ++C  LY  +   F  +P D +     S  C +C
Sbjct: 589  PFDDFAVDAND---------------FHCSYLYDDDHAKFTHIPSDFLDNSHQSEPCFSC 633

Query: 911  GTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
              K+ EK ++   +  +  F      Y +HD+ YI PH                NV    
Sbjct: 634  HEKQKEKNQQKLYL-LENGFTQHGVNYHIHDFTYIRPH---------------GNVR--- 674

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFV 1030
              V  + +I   K+    +    +V V+   R         Y  D R +Y + +   I  
Sbjct: 675  --VLNIAQITNTKK----DGDDLRVSVQYLGR---------YKDDERHLYMTNKKEQISS 719

Query: 1031 EAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL-PAHIKLRYSSGSLDS 1089
            + + G C ++   ++ A          F+     D   G+L  L P   K R+       
Sbjct: 720  DMLEGVCYLQYLTNVEAIECWVSHDDHFYLNQEQD-DHGNLSLLNPG--KFRFCQ----- 771

Query: 1090 EAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAI 1149
                      C +G+ ++  + +G + Q + L  +++F+G GGL  G+  SG   TK+A+
Sbjct: 772  ---------ICQDGQKQVIKDGKGFSQQNSKLIGMELFSGAGGLGLGIDMSGFVETKYAV 822

Query: 1150 EYEEPAGEAFK-----------------LNHPESLMLINNCNVILRAVMEKCGDAEDCVS 1192
            E+   A + +K                  N+P+ L+   + + +L+  + K        +
Sbjct: 823  EFSPSAAKTYKCRETYFLCIFYAYLFTRTNNPDVLVYNQDSSTLLQQALAK-------DN 875

Query: 1193 TSEAAELAASLDENVINNLPLPG-QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1251
                  L +   +     +P  G QVDFI GGPPCQ FS  N   +   + ++  +  + 
Sbjct: 876  GKNPPPLLSKDGKTHCPEMPQKGCQVDFIFGGPPCQSFSLANHHRKK--NDIRSTLPCSM 933

Query: 1252 LSFADYFQPRYFLLENVRNFVS--FNKGQTFRLTLASL--------LEMGYQVRFGILEA 1301
            LS+ +Y+ P YFLLENVR  +S     G+T  +  A +        L +GYQ+ + +L+A
Sbjct: 934  LSYVEYYNPDYFLLENVRGLLSHTLQDGRTNTVVQAGMVKFICRTSLALGYQIHYKLLQA 993

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF----AAPELKIMLSDNYQYSAVRSTAN 1357
              +G  Q R R   W A     LP++P P H F    A P L    +  +     RS  +
Sbjct: 994  SHYGTPQGRSRVIFWGAKQGLVLPQFPLPSHAFEGRLACPSLP---TGGHIPPPSRSKIS 1050

Query: 1358 G-----APFRAMTVRDTIGDLP---------------------------------AVGNG 1379
            G     AP + + V D IGDLP                                  +  G
Sbjct: 1051 GDYHQYAPLKPILVDDAIGDLPPFEWTNPHQVIPRTSSQKDKRRSLKTPIPQFDAVLLQG 1110

Query: 1380 ASKTIME---------YQNDPVSWFQKRIRGNM--------AVLTDHISKEMNELNLIRC 1422
               TI           Y + P + +QK +R  M        + + DH +   +   +   
Sbjct: 1111 NKGTIFSNPGFPEGVPYMSGPQNRYQKWLRQGMVDEESDTESEVQDHFTSRFSAFLIEAS 1170

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR-HNQWK-GLFGRLDWEGNFP 1480
              +P RP AD   LP E                 P  A     QWK   +GR+D +G F 
Sbjct: 1171 VTVPLRPYADHKALPTE---------------LQPTYAMAGRKQWKHSFYGRMDGDGQFK 1215

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH-------KHRQIG 1533
             ++T   P  K     HP Q R++++RECARSQGFPD + F  S +H       K RQIG
Sbjct: 1216 CTMTRASPNLKNSWLLHPHQKRMISIRECARSQGFPDGFIFESSNEHPQRVVADKMRQIG 1275

Query: 1534 NAVPPTLAFALGRKLKEAV 1552
            NAV    A ALG++L  ++
Sbjct: 1276 NAVAVPFALALGKELGTSL 1294


>gi|449547195|gb|EMD38163.1| hypothetical protein CERSUDRAFT_122915 [Ceriporiopsis subvermispora
            B]
          Length = 1081

 Score =  249 bits (636), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 225/842 (26%), Positives = 353/842 (41%), Gaps = 159/842 (18%)

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDI 856
            K FH   +Q GS T+L  TA+ + +F   +C DL+++ I            +GH + + +
Sbjct: 294  KYFHAQWLQHGSQTLLQETAHSKSLFWLTECDDLQVECI------------FGHCNLRIL 341

Query: 857  ANADKVDRARAEERKKKGLPTEYYCKSLYW-PERGAFFILPVDSMGLGV------GSCHA 909
              AD       EE        +++   L W P   AF  +P   +   V       +C  
Sbjct: 342  GLADDEPLDEGEENN------DFFTNGLTWDPLYTAFVQIPEREVDSAVRTCEPHTTCFP 395

Query: 910  CGTKESEKEKETFKV-HSKTSFVYGTAEYFVHDYVYI---SPHHFTWDKAEGETFKAGRN 965
            CG K   +E+  +K      S      +Y + D+VY+   S   + +  AE    + G +
Sbjct: 396  CGLKALRQERSMWKFSEDDGSISQHGVDYHISDFVYLRVKSEEAYLYQIAEIVNIEPGGS 455

Query: 966  VGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEET 1025
            + +    +    ++I+ ++ K  E  S     RR F    I+  +A              
Sbjct: 456  LPIVEASLYGRYDLIL-RDLKGNEAWSLPKDNRRLFATPTITRVEA-------------- 500

Query: 1026 HLIFVEAIAGKCEV---RKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRY 1082
                  AI GK  V   R K+++          H +       P   SLK L   + L Y
Sbjct: 501  -----SAIEGKVYVKPCRTKSELDEWLQAD--DHYYVDLWAQSPRVTSLKAL---MNLDY 550

Query: 1083 SSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGI 1142
            +           R   +C+   D    E +   +Q   L  LD+F+G GGLS GL  S  
Sbjct: 551  TCT---------RSCPQCLHAHDSERAEAKRFLNQRGPLRALDLFSGAGGLSTGLNCSDS 601

Query: 1143 SSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAAS 1202
             +TKWA+E+   A  +++ NHP++++     N++L+  +       D +   +   L  S
Sbjct: 602  VNTKWAVEFSPSAALSYQANHPDTIVYNQCTNLLLQHAI-------DTLEHKKTGPL-MS 653

Query: 1203 LDE---NVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQ 1259
            L+E     + +LP PG+VDFI GGPPCQ FS MN   ++    ++  ++   LS+ + ++
Sbjct: 654  LNEKKRTQLPSLPKPGEVDFIFGGPPCQSFSLMNHSKKA--DDIRSTLVCNMLSWVELYR 711

Query: 1260 PRYFLLENV--------------RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFG 1305
            P YFL+ENV              R+ V   K    +  + +   +GYQ+ F +L+AG +G
Sbjct: 712  PSYFLIENVIGMLFHPLGGEQSGRSVVGGVKMGMVKFIVRAATALGYQIHFRVLQAGQYG 771

Query: 1306 VSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR----------ST 1355
              Q R+R     A     LP++P P H F        L        +           + 
Sbjct: 772  APQGRRRLIFIGARRDLPLPQFPAPSHSFPRKTQCYNLPTGDTLQPITRCQIDEEDDITL 831

Query: 1356 ANGAPFRAMTVRDTIGDLPAVG-----------------------NG---------ASKT 1383
               AP   +TV D IGDLP                          NG         + KT
Sbjct: 832  EPWAPLPTVTVMDAIGDLPQFDWINPHIELRKSKGDIREAREREENGIPSFDAVARSCKT 891

Query: 1384 I------MEYQNDPVSWFQKRIRGNMAVLTDH-ISKEMNELNLIRCQKIPKRPGADWHDL 1436
            +        Y   P++ +Q   R       ++  S+    + + R   IP R  AD  DL
Sbjct: 892  LPGFTAPAPYSFPPLTRYQTWARETAGEEVEYQYSRTFTHMVVERVANIPFRADADHVDL 951

Query: 1437 PDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF 1496
            P           V  +P    +       ++G++GR+D  G+F T++T  +P  K G   
Sbjct: 952  PR----------VLYVPRMFESEGVPKKCYRGIYGRIDGNGHFWTAMTTIKPNAKGGRVL 1001

Query: 1497 HPDQDRILTVRECARSQGFPDSYQF-------HGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            HP Q RI+TVRECAR+QGFPD Y+F       +  I  +HRQIGNAVP  LA ALG++++
Sbjct: 1002 HPTQKRIITVRECARAQGFPDHYKFLSNNSRLYDVIADQHRQIGNAVPVPLAMALGKEIE 1061

Query: 1550 EA 1551
             A
Sbjct: 1062 RA 1063


>gi|409082235|gb|EKM82593.1| hypothetical protein AGABI1DRAFT_125058 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1360

 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 282/1136 (24%), Positives = 458/1136 (40%), Gaps = 211/1136 (18%)

Query: 511  ISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSE 570
            I IRT+ AWY LG+PSK Y   Y P        + I+ ++             + K L  
Sbjct: 323  IYIRTESAWYILGRPSKLYRDDYTPFW----TQVCILHLI-------------IAKALQN 365

Query: 571  IKKDQHSYIS--SDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKMEERHHT 628
             K     +I+   DP    +++V    I+ +       EQ     FI+ ++  + +  + 
Sbjct: 366  PKSTYDEFINDFDDPQFKNKFIVSAKMILGRDLNRDDLEQDNIKPFIVSILDDLCQDCNL 425

Query: 629  KWLVKKKKVQK---SEINLNPRASMGPVVVSKRKVMQAT-TTRLINRIWGEYYSNYSPED 684
               +K   +     + I+ +   S         +  +AT  T ++ R+  E   N++ + 
Sbjct: 426  STKLKDSPLLAYFMAGISTSSSNSTSEKKSKLPEQARATVVTPIVGRV-AEQLFNHAFQV 484

Query: 685  GKEETACEANE-DEEVEEQGENEEDDTEEEKLI-----SEERQISCSVAV-QIKSRSTKK 737
              E+   E++E  EE+E   E+ ED T    +I     +E RQ   SV + +++ R+   
Sbjct: 485  VGEQQEQESHEVAEEIELVKEHNEDPT---SIIWGVRATENRQFFTSVKIDEVEYRA--- 538

Query: 738  EITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCK 797
                 GE V         +       ++   +V    ++L    + YF E       G K
Sbjct: 539  -----GEVVMVIPGQDSDRVREQNSKMAAAQSVNQYGNQLWFCQIFYFFE-----EEGKK 588

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            LFHG  +  GS T+L   A+ + ++L N C    +  I +   V I          +D  
Sbjct: 589  LFHGQWLVHGSKTILQEAAHSKSLYLINSCASNPVASIFKKCEVRIL--------ERDET 640

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV-DSMGLGVGS------CHAC 910
                    RAE          Y+C  L+  E  AF  LP  +   +   +      C++C
Sbjct: 641  EPHDDQNPRAE---------NYHCGFLWDEEHAAFLNLPTKEEYNIAFHTLPSYSPCYSC 691

Query: 911  GTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
            G +    E E+ ++  K  F      Y ++DYVYI P                 ++ LK 
Sbjct: 692  GLEAMTTEAESVRLLQK-GFSLSNVAYHINDYVYIHPP------------PHENSLLLK- 737

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDD---ISAEKAYCSDIREVYYSEETHL 1027
              + Q++E+  P       +   Q++VR   R +D   +  EK    + R ++ +     
Sbjct: 738  --IGQIVEVSGP-------ISDIQIRVRYLERYNDTPQMEKEKKMMDNERHLFLTFRIGE 788

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
            +  + + GKC V+   +        I++     +H     KG              S   
Sbjct: 789  VQPDQLDGKCFVQFLEE-----DGEIYEWTKHNDHFFLNQKG-------------HSVLF 830

Query: 1088 DSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKW 1147
            D EA       KC++   E     +        L  L++F+G GG   G++ S     KW
Sbjct: 831  DIEAGDFDFCEKCVKTRREELARAEQLFEHNGPLRGLELFSGAGGFGTGMELSEFVEAKW 890

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV 1207
            A+EY   A + +  NHP + +   + + +L+  +++           +      S D  +
Sbjct: 891  AVEYSPVAAKTYARNHPAAKVYCQDTSRLLQHTIDE--------HQGKNPPPLQSNDNKI 942

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
               +P  G+VDFI GGPPCQ FSG N   Q+    ++  M    LSF +++   YFLLEN
Sbjct: 943  CPPMPNRGEVDFIFGGPPCQSFSGANHHRQA--DDIRSTMPCNMLSFLEHYDADYFLLEN 1000

Query: 1268 VRNFVSF-----NKGQTF---------RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            VR   ++      KG+           +L +  L+ +G QV++ +L+AG +G  Q+R+R 
Sbjct: 1001 VRGLANYPLLSEQKGRILSGGVKSGMVKLIMQCLVALGRQVQWKVLQAGQYGAPQNRERV 1060

Query: 1314 FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY-SAVRSTANG-----APFRAMTVR 1367
              WAA     LP+ P P++ +    +  +L    +     RS   G     AP   +TV+
Sbjct: 1061 IFWAAKRGLVLPKHPVPLYAWKRGAMSSLLPTGTKLPPPTRSLVPGVCHQYAPLPPITVK 1120

Query: 1368 DTIGDLP----------------------------------AVGNGASKTI--------- 1384
              IGDLP                                  AV +G+   +         
Sbjct: 1121 TAIGDLPAFDWINPHIIVRPTKADLQFDAQRSQVLGIPQFNAVHSGSQNELDSYPGYPYG 1180

Query: 1385 MEYQNDPVSWFQKRIRGNMA--VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVK 1442
             EY+  P + FQ  +R  M    L  H +K  +   +     +P   GAD   LP   + 
Sbjct: 1181 TEYKTGPQNRFQMWMRKGMGDNKLQGHYTKRFSLRAVEATTTVPLEEGADHTSLP---LA 1237

Query: 1443 LSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDR 1502
            L  G  V+      P T       K  +GRL  +G+F  ++T   P  K     HPDQ R
Sbjct: 1238 LQPGHRVE------PKTK------KSFYGRLSNDGHFACTMTQLTPATKNARPLHPDQRR 1285

Query: 1503 ILTVRECARSQGFPDSYQFHGS------IQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            ++TVRE ARSQGFPD+Y F  +         + RQIGNAVP  +A ALG++L  A+
Sbjct: 1286 MVTVRELARSQGFPDNYVFETTGSGSAIFYDQIRQIGNAVPVPMALALGKELGVAL 1341


>gi|449541865|gb|EMD32847.1| hypothetical protein CERSUDRAFT_99217 [Ceriporiopsis subvermispora B]
          Length = 1248

 Score =  244 bits (622), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 295/1265 (23%), Positives = 512/1265 (40%), Gaps = 206/1265 (16%)

Query: 394  YRPSEEEFDE---LLAYDSDYDSCD-IDQLPRRMLHDWSLY--NSDSRLISLELLPMKPC 447
            Y+P+ ++ +E   L+ +  D    D  +  P R+L D+ ++  N    ++SLELL  +  
Sbjct: 69   YKPNPDDLEEKADLIIFGEDRSQDDDPNTKPVRILSDFCIFDPNHGMEIVSLELL--QES 126

Query: 448  EDI-DVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGS 506
            + + D     +G +  D    F    D  Q    +   +D     +  S+I  +  ++  
Sbjct: 127  DGVADRHFEAAGWVFPD----FLNPEDEGQ-EDDIDDKRDFNFQRVRTSAIMNFSFDYTI 181

Query: 507  SMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSR----LSFT 562
                + I+T+ A+Y+L   +K Y   +   L+  R+A  +I+   E   ++     L+F 
Sbjct: 182  PDDPLYIQTEFAYYKLTSATKIYQDCFSNFLRPKRIAQQVISSAVENPELTFREFCLNFQ 241

Query: 563  DVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGLMKKM 622
            +V    S  + D  S I +  AA+ + V    QI   +  +   +  K  +F     + +
Sbjct: 242  NVNASESFTESDITSAIPTISAAL-KGVDNGAQIASTVLLKAILDGQKPLSFT---RRAL 297

Query: 623  EERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSP 682
            + +H +  LV+++ + +        A +  +V+        + T  I R+    +     
Sbjct: 298  QNQHDS--LVRQRMLPRQSRWAT--ADIDVLVLRPENQTPTSVTPFIARLAYGLFRERFV 353

Query: 683  EDGKEETACEANEDEEVEEQGENE------EDDTEEEKLISEERQISCSVAVQIKSRSTK 736
              G      +AN   +V  + +         +    EK     R +   ++ +I+    K
Sbjct: 354  VLGPRPKMLDANTYTDVARKKDRNMLWYTISEGHRLEKATQHTRNVVFRMSDRIRDEFFK 413

Query: 737  KEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC 796
              +T +G   +   + L +     G  +        EV E   L   ++   +       
Sbjct: 414  C-VTVDGIQYKVGDVVLVRAGKYGGRKLEPLPLKRDEVPEHASLARYFWFAKILYIDQMR 472

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDI 856
            K FH    +  S T+L    + RE+FL N C D           +DIR     H  R   
Sbjct: 473  KRFHVRWYEHSSFTMLQALGDHRELFLWNGCDD-----------IDIR-----HALRNIT 516

Query: 857  ANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCH------AC 910
             +    DR+          P+EY+C  +Y P   +F  L      +   + H       C
Sbjct: 517  VHHQCTDRSMVP-------PSEYFCNLVYDPSDASFTDLEESEFAIAAKASHPPENCPVC 569

Query: 911  GTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
              +  +++ +  +V  +   V+    Y V D+  I       D   GE  +         
Sbjct: 570  LFRTQKQQDQGGRVIPR-GIVWRNTPYHVGDFALIRA-----DDGPGEIVQ--------- 614

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDIS--AEKAYCSDIREVYYSEETHLI 1028
                  +E I  +  +       Q+ VR   R  D           D R ++ ++    I
Sbjct: 615  ------VEDIAAQGSRDVRKFVAQLTVRLLGRMSDHMQICPGTVLKDERHLFLTDMRREI 668

Query: 1029 FVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLD 1088
             V+ I  +C V+               H+   E+L    +  L   P H    Y    +D
Sbjct: 669  SVDRIEHRCFVQ-------------VAHVGTRENL----RAWLDSSPYHFYAHYKF--VD 709

Query: 1089 SEAASRRKKG-----------KCIEGEDELEVEKQG--GASQENHLATLDIFAGCGGLSE 1135
            ++  S  KK            +C +  +++  E+     A+Q   +  LD+FAG G    
Sbjct: 710  NQPGSWAKKTILSPKKALMCKQCTDENEKILGEENDFLNATQRRPMKGLDLFAGAGAFGL 769

Query: 1136 GLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSE 1195
             ++ +G      AIE    A    K+N P++++     NV+LR            + + E
Sbjct: 770  AMEATGCIKITHAIEISPSAARTLKINSPDTIVYNQCANVVLRY----------AIKSQE 819

Query: 1196 AAELAASLDENVINN-----LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
                   + +N++        P PG++D +  G PCQ  S +N F ++   K    +I  
Sbjct: 820  LQGQKFEIPQNILGTEQLAPPPKPGEIDVLIAGFPCQPHSTLNMFQKANDRKTH--LIAT 877

Query: 1251 FLSFADYFQPRYFLLENVRNFVSF-------NKGQT--------FRLTLASLLEMGYQVR 1295
             +++ D+++P+Y  LENVR F+S        N+ +          +  +A+ LE+G+QVR
Sbjct: 878  LMAYIDHYKPKYVFLENVRGFLSHALQAVQANRHKVVGGVEKGGLKWLVATFLELGFQVR 937

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRS 1354
            FG+L+A  +G  QSR R F+ A+     LP++P P H F   + L+I L+D+   +AVR+
Sbjct: 938  FGLLQAAHYGTPQSRVRFFLIASRRGLPLPQFPTPTHFFHVKDNLEIKLTDDEPAAAVRT 997

Query: 1355 TANGAPFRAMTVRDTIGDLP-----------AVGNGASKTI------------------- 1384
             A  APF  +++ D IGDLP           A   G S++                    
Sbjct: 998  AAGVAPFSFVSIEDAIGDLPRFDWENPKKLEARQGGRSRSASMRASEEPAPERQVREVAC 1057

Query: 1385 -------------MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
                         +EY ++P + FQ + R    +   H ++ +    + R   IP R  A
Sbjct: 1058 RSDKPFCGFAGSNVEYFSEPRTTFQVKSREKPTMDLQHYTRVLKPETVERVINIPLRAKA 1117

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQW-KGLFGRLDWEGNFPTSITDPQPMG 1490
            D+  LP   V L   Q  D      P++A   N +  GL+GRL     F T++T+ +P  
Sbjct: 1118 DYRSLP---VYLHEWQFAD------PSSALARNGFPPGLYGRLAPNECFHTTVTNVEPTA 1168

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHG---SIQHKHRQIGNAVPPTLAFALGRK 1547
            K     HP   R++TVRE ARSQGFPD + F+     ++   RQIGNAVP  LA ALG++
Sbjct: 1169 KQSWVLHPWCKRVITVRELARSQGFPDHFVFYARDSDVKTMQRQIGNAVPWPLAAALGQE 1228

Query: 1548 LKEAV 1552
            L+ A+
Sbjct: 1229 LRAAL 1233


>gi|392567063|gb|EIW60238.1| S-adenosyl-L-methionine-dependent methyltransferase [Trametes
            versicolor FP-101664 SS1]
          Length = 1101

 Score =  243 bits (621), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 242/505 (47%), Gaps = 91/505 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L++FAG GGLS GL  SG+  T+WA+E+   A   +K NHP++++     N +L   
Sbjct: 593  LRGLELFAGAGGLSTGLDMSGMVQTRWAVEFSPSAARTYKANHPDTIVYSQCSNKLLEHA 652

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENV---INNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
            +   G A+D  ST        SLD  V   +  LP PG+VDFI GGPPCQ FS MN   +
Sbjct: 653  I---GLAQD--STLPPLR---SLDPEVSECLPPLPQPGEVDFIYGGPPCQSFSNMNHHKK 704

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG--------------QTFRLT 1283
            +  + ++  ++   +S+ +Y++P +FLLENV   +S+  G                 +  
Sbjct: 705  A--NDIRSTLVCNMISYVEYYRPMFFLLENVVGMLSYRLGGEQDHNRVVGGIEMGVVKFI 762

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
            L SL  +GYQV F +L+AG  G  Q R+R     A     LP +P P H F  P   + L
Sbjct: 763  LGSLTILGYQVHFKVLQAGQHGAPQGRRRVIFLGAQRDVPLPAFPLPQHAFPTPVHNVNL 822

Query: 1344 -SDNYQYSAVRSTAN-----GAPFRAMTVRDTIGDL---------------PAV------ 1376
             +    +  +R  A+      AP   +TVR+ I DL               P+V      
Sbjct: 823  PTGEVLHPVIRVGADEDGHQCAPLPPVTVREAISDLVSAKLIDPNSAKRSTPSVLHELGS 882

Query: 1377 --GNGASK------------------TIMEYQNDPVSWFQKRIR-GNMAVLTDHISKEMN 1415
                G ++                  T + Y   P+S +Q  +R GN   +  H ++ ++
Sbjct: 883  RIAQGIARFTACAHDETGQAHPSGFYTPVPYPQPPLSRYQSWLRAGNGDTVQYHYTRWLS 942

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            +L + R   IP +P A   DLP   + L   ++          T K  + ++ L+GR+  
Sbjct: 943  KLVVERVVNIPMKPNAGHEDLP---LDLRVTKLYKT------ETGKPKSVYRSLYGRIAS 993

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-------HGSIQHK 1528
             G F T++T   P  K G   HPDQ RILT+RECAR+QGFPD YQF       +  +  +
Sbjct: 994  NGQFVTAMTTIAPNAKGGRVIHPDQKRILTIRECARAQGFPDRYQFLSRNEKANDHVADQ 1053

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAVE 1553
             RQ+GNAVP  LA ALG+ +  A+ 
Sbjct: 1054 MRQVGNAVPVPLALALGKAIGNALH 1078


>gi|402224966|gb|EJU05028.1| S-adenosyl-L-methionine-dependent methyltransferase [Dacryopinax sp.
            DJM-731 SS1]
          Length = 1321

 Score =  241 bits (616), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 303/1276 (23%), Positives = 494/1276 (38%), Gaps = 234/1276 (18%)

Query: 408  DSDYDSCDIDQLPRRMLHDWSLY--NSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEG 465
            +S  D  + + LP R+L D+ LY  N+++R++SLE L  +P   +    F S   +  E 
Sbjct: 136  ESSEDPPNSESLPIRVLTDFILYDENNNNRIVSLEAL-YEPGTSLRAYGFVSSLPVDPEN 194

Query: 466  SGFC--LDTDSSQCTSGVSGAQDAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLG 523
                   D D+   TS      D   + + LS+I    I+   +     +RT  AWY L 
Sbjct: 195  EEELEIADEDAESETS------DENTYELNLSAIFSLQIDPNPTEPMFWLRTSFAWYILD 248

Query: 524  KPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRL-------------------SFTDV 564
            +P  +  P Y P  K   +A   ++  +  TR  +L                   SFTD 
Sbjct: 249  RPDPRCLPVYVPYWKHLYLARLALSKTRTVTRRYKLTYDSIMQEELGGAVSLFSTSFTDE 308

Query: 565  IKRLSEIKKDQHSY-----ISSDPAAVERYVV--VHGQIVLQLFAEYPDEQIKKCAFIIG 617
              R  ++  +   Y     ++ +     R  +   + +++L         +I K     G
Sbjct: 309  EIRGLDVCSESDFYDLINDVNDEDNEKTRTALELAYTELLLSRVKNPKQRKITK-----G 363

Query: 618  LMKKMEERH------HTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLINR 671
            L K+   RH      H +  +   +  K  +N+                +++  + L  R
Sbjct: 364  LPKRTVARHVTRDGRHPELNLMGSRNTKKHVNIEFEVLKHRNPTYATPFVRSLASDLCFR 423

Query: 672  IWGEYYSNYSPEDGKEETACEANEDEEVEEQGE---NEEDDTEEEKLISEERQISCSVAV 728
            ++G+   +   EDG EE+A     D E    G    + E DT     +S+ R        
Sbjct: 424  LYGQ---SIKEEDG-EESAINLTCDPETVLDGAFSFSSEPDTSLVWKLSDHRDEEYVNEE 479

Query: 729  QIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPV------ 782
             + S  +       G    + GL+L             G  V+V  D  D+ PV      
Sbjct: 480  AVNSYLSAAS----GSATGRKGLSL-----------RAGDLVVVRGDPRDEDPVGASKRL 524

Query: 783  ----------IYFVEYMF---EATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRD 829
                       +F + +F            H   +   S T LG   + RE+ L N C  
Sbjct: 525  VGKGAANDWVYWFAQVIFFYKNPRDRESEAHVRWLAHSSRTQLGEAGHPRELVLRNLCSS 584

Query: 830  LELQDIKQTVVVD-IRSVPW-----GHQHRKDIANADKVDRARAEERKKKGLPTEYYCKS 883
            + L  I   + V  IR  PW     G  +R        +DR     R       +  C S
Sbjct: 585  INLSTILNKIKVQYIR--PWEEEPSGFPYRA-------IDRDNFFYRYAANHEGDLLCAS 635

Query: 884  LYWPERGAFFILPV---DSMGLGVGSCHACGTKESEKEKETFKVHSKTS--FVYGTAEYF 938
                     F+ P    D+  +    C  C  ++S +E    ++    S   +Y    Y 
Sbjct: 636  R--------FMFPTETEDTDSIHAYGCFTCHLRQSIEEDNIPRMPKPDSGLLLYKGVTYH 687

Query: 939  VHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
            + D+VY     F W           +N   K Y + Q+++I         +  +  + + 
Sbjct: 688  LFDFVY-----FGW---------TDKNHVNKAYRIGQIVKI-------NRQAINPSMTLT 726

Query: 999  RFFRPDDI-SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHI 1057
             F R D++  A      D + +  ++    I+ E I GKC V  ++ I    +  +    
Sbjct: 727  LFERYDEVVCAVGEEYRDHKRLVATQRKVSIYAERIRGKCYVMHRDAIRDFASWMLADDR 786

Query: 1058 FFCEHLHDPSKGSLKQLPAHIK------LRYSSGSLDSEAASRRKKGKCIEGEDELEVEK 1111
            FF +H    S G+    P  +       +RY                 C + +  ++   
Sbjct: 787  FFVDHAAPISNGNATWSPTALTPLPLSDVRY-----------------CHDVDCNIQRIS 829

Query: 1112 QGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN 1171
            +        L  LD++ G GGLS GL++SG   T W ++    A   FK N P ++ +  
Sbjct: 830  KQNPRPTRKLRALDLYHGAGGLSHGLEKSGAFETCWGVDLSPSAHMTFKKNFPNAIAIFQ 889

Query: 1172 NCNVILRAVMEKC-GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
              N +LR  +E   G   D +      ++A          LP PG  D I  GPPCQG+S
Sbjct: 890  CANEVLRHAIENAQGADHDSLYPIGGGDVACP-------PLPNPGDPDIIICGPPCQGYS 942

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR--------- 1281
             +N + ++    ++  ++   LS+ DYF+PR+FLLENV+  ++ ++G+  +         
Sbjct: 943  VLNSYRRT--DDIKNTLVANALSYVDYFRPRFFLLENVQPLLN-SRGKVLKPGDIDERII 999

Query: 1282 ------LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
                    +  L   GYQVR  +L+AG FGV+Q R R F WAA  ++ LPE+P P H +A
Sbjct: 1000 ENAVRKFIVRFLTARGYQVRVTVLQAGEFGVAQHRARVFFWAAKRNEALPEFPLPTHTWA 1059

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM---------- 1385
                           + R    GAP   +TV+D IGDLP       K +M          
Sbjct: 1060 R-----------TTPSRRDALGGAPLPCVTVKDVIGDLPEWHWINPKKLMPRPVVPKPAG 1108

Query: 1386 ---------------------EYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
                                  Y   P + +QK +RGN   +  H +      ++ R   
Sbjct: 1109 PHFDAVTYDRKTRTCGYAGFVPYATLPATAYQKELRGNRKGVRYHSTLTYVGESVERVCN 1168

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            +P+  G    D   +  +L  G+       C  + A R    +G + R+  +    T +T
Sbjct: 1169 VPRPKGDKCLDAGRDYRELD-GRFSVWHLTCPHSRAARGGYGEGKYARVYPDRPARTVLT 1227

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF---HGSIQHKHRQIGNAVPPTLA 1541
              +P GK G   H +Q+R+L+ +E AR QGF D++ F      ++   R IGNAVP  L 
Sbjct: 1228 RNEPTGKQGRVLHYNQNRVLSAQENARLQGFADTFTFISGTDDLRDIMRLIGNAVPIPLG 1287

Query: 1542 FALGRKLKEAVESKRS 1557
            + LGR+L  A  +K +
Sbjct: 1288 YHLGRQLASAALAKEA 1303


>gi|380019136|ref|XP_003693470.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like, partial [Apis
            florea]
          Length = 298

 Score =  240 bits (613), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/285 (43%), Positives = 176/285 (61%), Gaps = 45/285 (15%)

Query: 1314 FIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIG 1371
             I AA+P + LP++PEP HVF+  A +L +++ DN +YS+       AP+R ++VRD + 
Sbjct: 2    IILAAAPGEVLPKYPEPTHVFSKRACQLSVIV-DNKKYSSNCDWIESAPYRTISVRDAMS 60

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM--AVLTDHISKEMNELNLIRCQKIPKRP 1429
            DLP + NG +   + Y ++P+S FQ++IR     A+L DHI K+M  L   R   IP   
Sbjct: 61   DLPNIRNGWNNEEIAYSDEPISHFQRKIRPKEPDAILRDHICKDMAPLVEARIAHIPTAS 120

Query: 1430 GADWHDLPDEKVKLS--------------------------------TGQVVD------- 1450
            G+DW DLP+  V+LS                                TG++ D       
Sbjct: 121  GSDWRDLPNIAVRLSDGTYSKKLEYMYHDKKVGKSSSGALRGVCSCCTGKMCDPIARQYN 180

Query: 1451 -LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             LIPWCLP+T KRHN W GL+GRL+W+G F T+IT+P+PMGK G   HP+Q R+++VREC
Sbjct: 181  TLIPWCLPHTGKRHNHWAGLYGRLEWDGFFGTTITNPEPMGKQGRVLHPEQTRVVSVREC 240

Query: 1510 ARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
            ARSQGFPDS++F+G+I  KHRQIGNAVPP L  ALG ++++ +++
Sbjct: 241  ARSQGFPDSFRFYGNILDKHRQIGNAVPPPLGAALGFEIRKCLKN 285


>gi|299753284|ref|XP_001833175.2| hypothetical protein CC1G_01237 [Coprinopsis cinerea okayama7#130]
 gi|298410229|gb|EAU88864.2| hypothetical protein CC1G_01237 [Coprinopsis cinerea okayama7#130]
          Length = 1253

 Score =  236 bits (602), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 316/1330 (23%), Positives = 508/1330 (38%), Gaps = 288/1330 (21%)

Query: 358  QSKKQKKTQGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAY-DSDYDSCDI 416
            +S+++    G +   N ++  +NEDEI              EE  +L+ Y ++  +  D 
Sbjct: 54   RSEEEDDFVGDSLPENGYFYTVNEDEI--------------EETGDLVVYGETSPEDADD 99

Query: 417  DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
              +P R + D+ LY    RL S+E++PM   E  D+      +M S   SG     +   
Sbjct: 100  GDIPVRFITDFHLY----RLDSMEVVPMSQLEQGDL------EMASYGMSGIVQPWEEDS 149

Query: 477  CTSGVSGAQDAGGFPIYLSSIKEW-------MIEFGSSMI--------FISIRTDLAWYR 521
                     ++    ++LSS  +W       ++E+    +         + +RT  AWY 
Sbjct: 150  SDDDTLSDIES----LHLSSYTDWDRVRLTRIVEYDVHHVDRTGVLDPKLYVRTQYAWYI 205

Query: 522  LGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISS 581
            LG+P+  Y P++ P+    R+    +    E    +RLS++D+   L E  +DQ +    
Sbjct: 206  LGEPALTYRPFFAPLWTRHRLTHLFLCAAMED---ARLSYSDLQNTLPE--RDQQT---- 256

Query: 582  DPAAVERYVVVHGQIVLQLFAEYPDEQIKKCAFIIGL---MKKMEERHHTKWLVKKKKVQ 638
                                     + I   + I+G     + +E      +LV K    
Sbjct: 257  -------------------------QGITTASDILGREFSAEDLENAEVNSYLVTKVLDL 291

Query: 639  KSEINLNPRASMGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETACEANEDEE 698
            K  + +   A +  +  S  ++ +       +R   E+ + + P  G    +    E   
Sbjct: 292  KRRLKITRSALVRALCYSTGELDEGHVAAFDDRSSSEFTARHKPSAGPRRKSKALPEAIV 351

Query: 699  VEEQGENE-EDDTEEEKLISEERQISCSVAVQIKSRS-----TKKEITWEGECVRKSGLA 752
                  N   +      L S ++ ++ + A  IK  +         I W     R  G+ 
Sbjct: 352  YTTPLVNALSEGLFSVPLQSSKKTVNDTDAAAIKDDTPSHPFNPTHIRWG----RAIGVN 407

Query: 753  LYKKAIVHGEVVSLGSAVLVEVDELDQLP------VIYF--------VEYMFEATGG--- 795
             YK+A V G    +G  V+V  D     P        YF        ++Y  +   G   
Sbjct: 408  KYKEAFVDGVRYQIGDVVMVVPDGNYNAPNNVGRTTNYFGDNYWFCRIQYFHDVKSGPGI 467

Query: 796  CKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKD 855
             K+FHG  +  GS T +G  ++   +F+ + C D  +  I +                  
Sbjct: 468  AKMFHGQWLLHGSRTFIGELSHPGALFVIDSCGDNPINCIFKKCNF-------------- 513

Query: 856  IANADKVDRARAEERKKKGLPT--EYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTK 913
                 K+ R   +E +    P   E++C  +Y  ER  ++ LP     L  G C+ C   
Sbjct: 514  -----KILRPGDDEPQVHSDPNANEFHCGLMYDEERLKYYNLPTSFEILSPGDCYGCSAL 568

Query: 914  ESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVV 973
            E  +     K   K SF YG   Y  +D+VYI P        E     A  + GL+  + 
Sbjct: 569  EMAESMGVPKRIGKMSFSYGGIVYHQNDFVYIIPTGNRTRLLEIAQILAVHDDGLRLSIS 628

Query: 974  CQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKA--YCSDIREVYYSEETHLIFVE 1031
             Q LE                 K  R   P+D +   A     D R +  S     ++  
Sbjct: 629  VQYLE--------------RYTKSLRCLEPEDFTRAPASRLFYDERRLVLSNHEGTVYPH 674

Query: 1032 AIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEA 1091
            +++G C V+  +D    +        F+ +    PS  +L  LP  I             
Sbjct: 675  SLSGVCFVQLLDDQNRIDDWVKDDDHFYVDPSSLPSSKTL--LPCDI------------- 719

Query: 1092 ASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEY 1151
                    C+        E Q     +     +++FAG GGL  G++ S    T++ IE+
Sbjct: 720  --------CLSSHKATLQEIQRFIHSDKKAVAMELFAGAGGLGLGMELSQFVETRYVIEF 771

Query: 1152 EEPAGEAFKLNHPESLMLINNCNVILR-AVMEKCGDA----EDCVSTSEAAELAASLDEN 1206
             + A   +  NHP++ +   + N++L+ AV E  G A    E   S  E  ++  S  EN
Sbjct: 772  SDSAAFTYHKNHPKAKVYCQDTNLLLKQAVEEDSGKAYVPLESLCSQLECPKMP-SRQEN 830

Query: 1207 VINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            +          DFI GGPPCQGFS  N   +   + ++  M +  LS+A+++ P YFLLE
Sbjct: 831  I----------DFILGGPPCQGFSRANHTRKE--NDIRTTMPVNMLSYAEHYDPTYFLLE 878

Query: 1267 NVRNFVSF--------NKGQT-----FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            NV   + F        + G+       +  + +L+ +GYQV + +L+A  +GV QSR R 
Sbjct: 879  NVTGLLDFKLRDHRLGSNGEIIERGMLKFIVRALIALGYQVHWNVLQAAQYGVPQSRNRL 938

Query: 1314 FIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTA--------NGAPFRA 1363
             IWAA    TLP++P P H F       KI+ S +   +  R+            APF  
Sbjct: 939  IIWAAKRGATLPKFPVPTHAFEGNGHRPKILGSASSLPNVSRALIPDEHGRYHQCAPFLP 998

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEY--QNDPVS--WFQKRIR------------------G 1401
            +++ D I DLPA        I  Y    D     WF K+I                   G
Sbjct: 999  ISIFDAIADLPAFEWSNPYLIQPYPAMQDTTHRLWFGKKIPQLDAVSLTGKEGVDDTPVG 1058

Query: 1402 NMAVLTDHISKEMN--------------------------ELNLIR-CQKIPKRPGADWH 1434
              + L  +    MN                          + +L+     +P +  A   
Sbjct: 1059 YYSTLGSYAIPPMNRYQQWLREGMRTSQTRRVQGQYTRTFQAHLVESTTTVPLKANATHK 1118

Query: 1435 DLPDEKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG 1493
            DLP           + L P   LP   + +N     +GRLD   +F  ++T   P  K  
Sbjct: 1119 DLP-----------LSLRPKMALPGEKQENN---CFYGRLDGSAHFKCAMTQFSPTMKNS 1164

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFH------GSI---------QHKHRQIGNAVPP 1538
               HP Q R+ +VRE AR+QGFPDSY F+      G I           + +QIGNAV  
Sbjct: 1165 WPLHPLQKRVYSVRELARAQGFPDSYNFYSTSLRAGKIVDDGEADREMKQIKQIGNAVAV 1224

Query: 1539 TLAFALGRKL 1548
              A ALG++L
Sbjct: 1225 PFAKALGKEL 1234


>gi|170084587|ref|XP_001873517.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651069|gb|EDR15309.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1273

 Score =  236 bits (601), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 305/1274 (23%), Positives = 492/1274 (38%), Gaps = 262/1274 (20%)

Query: 420  PRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTS 479
            P R+L ++S ++   R    E++P+   E+        GK  + EG+G+ +    S    
Sbjct: 98   PIRILTNFSFFDPRHRN---EMVPLTDLEE------DHGKDQAFEGAGYAV-AKPSDMDE 147

Query: 480  GVSGAQDAGGFPIYL--SSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVL 537
                 ++    P+YL   +I  + I +      + I T  A+Y L K SK Y P+Y P  
Sbjct: 148  DEGQEEEDEDEPVYLRLGAIFRYTISYNPEDELVCIETLFAYYILEKASKAYEPFYRPFY 207

Query: 538  KTARVAISIITMLKEQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHG-QI 596
                +A  +I    EQ   S  +F    K   +I     +Y+  D      +  V G + 
Sbjct: 208  TPRHIARLVILFAAEQHPESPEAFLRNFKETVDIFG--RTYVEQD-----LWDAVPGIRR 260

Query: 597  VLQLFAEYPDEQIKKCAFIIGLMKKM-----EERHHTKWLVKKKKVQKSEINLNPRASMG 651
             ++ F +    +++K   I  L+ K       ERH+     ++ ++ +S+  +     + 
Sbjct: 261  AIEEFDQSDQTRLRKAPIIRYLLSKSLPTSDRERHYIPQPARRTRILQSKAFI---GDLD 317

Query: 652  PVVVSKRKVMQATTTRLINRI-WGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDT 710
              V+ K  + + T T  I  + WG  +                   E+++  G      +
Sbjct: 318  TAVLKKENLNRTTVTPSIFALAWGRVH-------------------EKLDIIGPPYHPLS 358

Query: 711  EEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAV 770
            + EK  S++R+    +   +          W  +          K AIV GE   +G  V
Sbjct: 359  KAEKE-SQKREAFLRLCRLVTKAKGPNPTDWSKDERVSPTSEFLKSAIVGGEKYEVGDVV 417

Query: 771  LV------------EVDELDQ---LPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT 815
            LV            +V++L     LP +++   +   +    ++H      GS  +LG  
Sbjct: 418  LVRNGEAPFWTLNADVNDLSPEVILPDLFWFARIIWISHANMMYHLQWYNHGSQIMLGEL 477

Query: 816  ANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGL 875
            A+ +E+FLANQC + EL+ I   V V          H    +NA K +            
Sbjct: 478  AHPQEIFLANQCEEKELETIVAKVKV----------HDGPFSNAVKRE------------ 515

Query: 876  PTEYYCKSLYWPERGAFFILPVDSMGL--------GVGSCHACG--TKESEKEKETFKVH 925
              E++C+ ++    GAF  +  D +             SC      T+  + E+      
Sbjct: 516  --EFFCRFMFDEGSGAFTSIDSDLLANLRSLPPRDNCASCQVMAERTRTEKMERVNTDGR 573

Query: 926  SKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEP 985
             +    Y    Y + D V          +AE      G         V +L       E 
Sbjct: 574  CQNGVTYNGKTYHIDDVVLF--------RAESGPAHIG--------CVTRL-------EF 610

Query: 986  KRAEVKS---TQVKVRRFFR--------PDDISAEKAYCSDIREVYYSEETHLIFVEAIA 1034
             R E  S   T V+VRR  R        P D+  ++ +    +E+       LI V    
Sbjct: 611  PRRETDSKTPTMVQVRRIGRISSLKHILPQDVLVDERHLFLTKEMTTFNAADLIQVVLAP 670

Query: 1035 GKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASR 1094
                +  ++D+                      +  L   P H  LRY   SL+ E  ++
Sbjct: 671  PMSSLTGEDDL----------------------EEWLALSPDHFYLRYQFDSLNPETWNQ 708

Query: 1095 RKKGKCIEGEDEL--------EVEKQGGASQ------ENHLATLDIFAGCGGLSEGLQQ- 1139
            R+K    + ED L         + ++  ASQ       + L TLD+F G G  S+GL + 
Sbjct: 709  RQKMP--KNEDFLVCQTCWRDRLREKKLASQFSAYLERDPLPTLDLFGGVGAFSKGLAEG 766

Query: 1140 SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC-GDAEDCVSTSEAAE 1198
            S       A+E    A +  + N P +++     N +LR  ++ C G   D         
Sbjct: 767  SECLRVTHAVEIGPSAAKTLERNSPGTIVYNQCANTMLRYAIKSCEGHKPD-------PP 819

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
            +     +  +   P PG++     G PCQ  S +NRF       ++  +IL  LS+ D++
Sbjct: 820  VQLFDGKTPVPAPPKPGEIKVFTIGFPCQTHSTLNRFQDV--RDIKSNLILNALSWIDFY 877

Query: 1259 QPRYFLLENVRNFVSFNKGQTFRLTLASL------------LEMGYQVRFGILEAGAFGV 1306
            +P     ENV  F+ F    T    +  +            L+MGYQVR G+L+A  +G 
Sbjct: 878  RPMLCYFENVAGFLQFRVFHTENSDVEGIEMGGLKLLKRGLLDMGYQVREGLLQAAHYGT 937

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHVF-----------------AAPELKIMLSDNYQY 1349
             Q R+R F+ AA     LP  P+P H F                  +  L I+  +  + 
Sbjct: 938  PQRRERFFLIAALDGTPLPALPQPTHDFPKEFFKNTNSDVTYKTTPSTSLSIVYPNKKRI 997

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLP---------------------------AVGNGASK 1382
              +RS    A    +T+ D I DLP                           A+     K
Sbjct: 998  QPIRSANGTALHPCVTIGDAIDDLPRFDWTHRDEQRSRRGREGVPGFPCDTEALARRGVK 1057

Query: 1383 TI-----MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHD-- 1435
                     Y + P + +Q++ R        H ++ +    + RC  I   P AD+    
Sbjct: 1058 QCGYVGRPPYHHPPKTVYQRQARMKPVRNLQHFTRILKADTVKRCINIRLEPNADYKSTL 1117

Query: 1436 -------LPDEKVKLSTGQVVDLIPW--CLPNTAKRHNQWK-GLFGRLDWEGNFPTSITD 1485
                   + DE  K       DL+ W    P++A     +K G +GRLD    FPT++T+
Sbjct: 1118 LFAFTMVITDEWRK---ALRADLLEWNTANPSSAMVRKGFKSGAYGRLDMNAVFPTTVTN 1174

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK----HRQIGNAVPPTLA 1541
              P  K   C HPD  R+LT+RE ARSQGFPDS++F  S++ K     RQIGNAVP  LA
Sbjct: 1175 AGPTAKQSRCLHPDSHRMLTIREFARSQGFPDSFEF-VSLKDKVITIQRQIGNAVPLPLA 1233

Query: 1542 FALGRKLKEAVESK 1555
             ALGR+L+ A+  K
Sbjct: 1234 NALGRELRAALFQK 1247


>gi|356560887|ref|XP_003548718.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Glycine max]
          Length = 1143

 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/379 (36%), Positives = 200/379 (52%), Gaps = 54/379 (14%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG+VD I GGPPCQG SG NRF    S     +   I+ F+    + +PRY L+E
Sbjct: 699  NILPLPGEVDVICGGPPCQGISGYNRFRNCASPLDDERNRQIVIFMDMVKFLKPRYVLME 758

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F+KG   R  L+ L+ M YQ R GI+ AG +G+ Q R R F+W A P + +P+
Sbjct: 759  NVVDILRFDKGSLGRYALSRLVHMNYQARLGIIAAGCYGLPQFRLRVFLWGAHPSEVIPQ 818

Query: 1327 WPEPMH-----VFAAPELK--IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG 1379
            +P P H      +  PE +  ++  D  Q   +         +A  ++D I DLPAV N 
Sbjct: 819  FPLPTHDVIVRYWPPPEFERNVVAYDEEQPRELE--------KATVIQDAISDLPAVMNT 870

Query: 1380 ASKTIMEYQNDPVSWFQKRIRGN---------------MAVLTDHISKEMNELNLIRCQK 1424
             ++  M YQN P + FQ+ IR                   +L DH    + E + +R  +
Sbjct: 871  ETRDEMPYQNPPETEFQRYIRSTKYEMTGSKSNGTTEKRPLLYDHRPYFLFEDDYLRVCQ 930

Query: 1425 IPKRPGADWHDL--------------PDEKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGL 1469
            IPKR GA++ DL              P E   L +G+   L+P +C       H + K  
Sbjct: 931  IPKRKGANFRDLPGVIVGADNVVRRHPTENPLLPSGK--PLVPEYCF---TFEHGKSKRP 985

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            F RL W+ N PT++T P    +V    HP+QDR+LT+RE AR QGFPD Y+F+G+++ ++
Sbjct: 986  FARLWWDENLPTALTFPSCHNQV--VLHPEQDRVLTIREFARLQGFPDYYRFYGTVKERY 1043

Query: 1530 RQIGNAVPPTLAFALGRKL 1548
             QIGNAV   ++ ALG  L
Sbjct: 1044 CQIGNAVAVPVSRALGYAL 1062



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 36/188 (19%)

Query: 996  KVRRFFR-PDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV-----RKKNDIPACN 1049
            +V+ F+R  D +  ++    D R V+YS   +   ++ I GK  V     R    + + +
Sbjct: 412  RVQWFYRIQDTVVQDEGGFHDKRRVFYSAIMNDNLIDCIMGKANVTHITPRVGLKLASIS 471

Query: 1050 APAIFQHIFFC------EHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEG 1103
            +   +  + +C        L++P K +    P+ ++      SL ++A++  +   C E 
Sbjct: 472  SSDFYYDMEYCVDYSTFRTLNNPVKTNELSPPSVLE------SLSTDASTVTESQPCSE- 524

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEA 1158
                          +  LA LD+++GCGG+S GL     ++     T+WA++ +  AGE+
Sbjct: 525  ------------LNKTELALLDLYSGCGGMSTGLCLGAKTASVNLVTRWAVDSDRSAGES 572

Query: 1159 FKLNHPES 1166
             KLNH ++
Sbjct: 573  LKLNHSDT 580


>gi|159461700|gb|ABW96889.1| CMT-type DNA-methyltransferase [Elaeis guineensis]
          Length = 925

 Score =  234 bits (597), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 202/387 (52%), Gaps = 50/387 (12%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG+VD I GGPPCQG SG NRF    +     + + ++ F+   D+ +P+Y L+E
Sbjct: 521  NILPLPGKVDVICGGPPCQGISGFNRFRNYNAPLEDPKNQQMVVFMDIVDFLKPKYVLME 580

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  L+ L+ M YQ R G++ AG +G+ Q R R F+W A P + LP+
Sbjct: 581  NVVDILKFAHGFLLRYALSRLVAMNYQARLGMMVAGCYGLPQFRMRVFLWGACPTEILPQ 640

Query: 1327 WPEPMHVF----AAP---ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG 1379
            +P P H       AP   E  I+  D  Q+  +         RA+ + D I DLP VGN 
Sbjct: 641  FPLPTHDVVVRGGAPNEFEQNIVAYDENQHRQLE--------RALLLEDAISDLPQVGNN 692

Query: 1380 ASKTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQ 1423
              +  M Y   P + FQ  IR                   A+L DH   ++NE + +R  
Sbjct: 693  EMRDEMPYGRPPRTEFQHFIRLTREELVNSASGAGRLSQKAILFDHRPLQLNEDDYLRVC 752

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVD--------LIPW---CLPNTAKRHNQWKGL--F 1470
            +IPK+ GA++ DLP   VK+    VV+        L+P     +P+ A    + K L  F
Sbjct: 753  RIPKKKGANFRDLPG--VKVGPDNVVEWDPEIERVLLPSGKPLVPDYAMSFIKGKSLKPF 810

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            GRL W+   PT +T  +P  +     HP+QDR+L++RE AR QGFPD Y+  G ++ ++ 
Sbjct: 811  GRLWWDETVPTVVTRAEPHNQA--LLHPEQDRVLSIRENARLQGFPDFYRLRGPVKERYI 868

Query: 1531 QIGNAVPPTLAFALGRKLKEAVESKRS 1557
            Q+GNAV   +A ALG  +  A + K S
Sbjct: 869  QVGNAVAVPVARALGYSMGLAFQGKCS 895



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 38/190 (20%)

Query: 1000 FFRPDD-----ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV----------RKKND 1044
            FFR +D     I+ +     D R V+ SEE +   ++ I  K  +           K++ 
Sbjct: 227  FFRAEDTVIKEIAHDPKTVHDPRRVFLSEEKNDNVLDCIVSKIRIVRVESNIDLKAKEDS 286

Query: 1045 IPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEA---ASRRKKGKCI 1101
            IP C+         + +  +  S  +   LP    LR  S +  + +   AS   KGKC 
Sbjct: 287  IPPCD--------LYYDMSYSLSYSTFGNLPPE-SLRAGSETSSTISSEDASNVCKGKC- 336

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAG 1156
              + + E    G   ++  L+ LD+++GCG +S GL      SG+   T+WA++    A 
Sbjct: 337  --QSDSEASSSG---EKRVLSLLDLYSGCGAMSTGLCLGANLSGLKLETRWAVDINPYAC 391

Query: 1157 EAFKLNHPES 1166
            E+ KLNHP +
Sbjct: 392  ESLKLNHPHT 401


>gi|409045793|gb|EKM55273.1| hypothetical protein PHACADRAFT_184086 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score =  233 bits (594), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 228/849 (26%), Positives = 359/849 (42%), Gaps = 170/849 (20%)

Query: 799  FHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIAN 858
            FHG     GS  +L  TA+ + ++L ++C D +L  I Q V  D++ +  G Q       
Sbjct: 442  FHGQYYMHGSKLLLQETAHPQALYLIDECDDQQLGCIFQKV--DVQEL--GLQ------- 490

Query: 859  ADKVDRARAEERKKKGLPTEYYCKSLYWPERG-AFFILPVDSMGLGVGSCHA------CG 911
                           G  T+ +   L W +   AF  L  + +   + +C        CG
Sbjct: 491  ------GDEPPFLNTGTSTKQFFSGLLWDQAMVAFHQLSPNDIQRALNACTPGKECINCG 544

Query: 912  TKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP- 970
              +    + ++ +  +   +     Y V D+VY+ P                  +   P 
Sbjct: 545  LSQLRMVQNSWDI-KEDRILQHDVSYHVGDFVYLRP-----------------TIPTPPE 586

Query: 971  -YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK------AYCSDIREVYYSE 1023
             YV+ Q+ EI+    P + + +  QV+VR   R D +   K         +D   +  ++
Sbjct: 587  LYVIGQITEIM----PIKGKGEH-QVRVRLIERYDVVIRTKWGPRKEGTKTDEHRLILTD 641

Query: 1024 ETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYS 1083
            E     V  I GK  V   + +                H   P    L      I LR  
Sbjct: 642  ELQPFDVSHIEGKAYVTHPSSLQV--------------HGFSPDDWVLHDDHYLIDLRAP 687

Query: 1084 SGSLDSEAASR---RKKGKC----IEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEG 1136
            S         +   R+   C     +    L+V++     Q   L  L++FAG GGL+ G
Sbjct: 688  SIRAKCSQMEKLLPRQLHYCQTCFAQRLKTLQVDRDL-LEQHGPLRCLELFAGAGGLASG 746

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEA 1196
            L QSG   TKWA+E    A  +F  N+P   +     NV+LR  +E           S  
Sbjct: 747  LHQSGFVETKWAVESSPSAALSFAANNPRCTVYTQCSNVLLRHAIET-----QQAPRSRP 801

Query: 1197 AELAA--SLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
             ++A+    D++ +  +P PG+VDFI GGPPCQ FSG NR+ ++    ++  +I   +S+
Sbjct: 802  RQVASLNHKDKDALPPMPKPGEVDFICGGPPCQSFSGANRWKKA--DDIRSTLICNTISY 859

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQ-------------TFRLTLASLLEMGYQVRFGILEA 1301
             D+++P+YFLLENV   +S   G                +    +L+ +GYQV   +L+A
Sbjct: 860  VDFYRPKYFLLENVTGLLSVPLGTEKQDQMTDGVAMGVVKFIFRALVSLGYQVHCKVLQA 919

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA-------PELKIM---LSDNYQYSA 1351
              +G  QSR+R   WAA     LP++P P H FA        P  +++   +      SA
Sbjct: 920  AQYGTPQSRERVIFWAARRDVPLPDFPYPTHHFAKGVRSFNLPTGEVLHRPVRVAPHESA 979

Query: 1352 VRST-ANGAPFRAMTVRDTIGDLP--------------------------AVGN------ 1378
             RS  A  AP  A+TV D IGDL                           AV N      
Sbjct: 980  KRSEYAQYAPLCAITVEDAIGDLQKFDWLPSGPLTDEDIHRLAQGIVRFEAVTNREARFP 1039

Query: 1379 --GASKTIMEYQNDPVSWFQKRIRGNMAV---LTDHISKEMNELNLIRCQKIPKRPGADW 1433
              G       + + P++ +Q + R  + V   +  H +++ +   + R   +P R GA+ 
Sbjct: 1040 YAGYCGKGTAFLHPPLNRYQMQAREGLDVDDNVVYHYTQKFSAKIVDRVLHVPLRAGANH 1099

Query: 1434 HDLPDE---KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
             DLP +   K KL             PN  K   +++  + R+D + +F T +T  +P G
Sbjct: 1100 QDLPPQYRDKRKLQ------------PN-GKSKKEYERHYKRIDRDSHFMTMLTTVKPSG 1146

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-------SIQHKHRQIGNAVPPTLAFA 1543
               +  HP Q R+LT+RECAR+QGFPDS++F          ++ + RQIGNAVP  LA A
Sbjct: 1147 TNAIVLHPTQKRVLTIRECARAQGFPDSHKFLSVHSIPAKVVEDQLRQIGNAVPVPLARA 1206

Query: 1544 LGRKLKEAV 1552
            LG++L + +
Sbjct: 1207 LGKELGKVL 1215


>gi|389748984|gb|EIM90161.1| S-adenosyl-L-methionine-dependent methyltransferase [Stereum hirsutum
            FP-91666 SS1]
          Length = 1151

 Score =  231 bits (588), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 193/640 (30%), Positives = 281/640 (43%), Gaps = 85/640 (13%)

Query: 974  CQLLEIIVPKEPKRAEVKSTQVKVRRFFR-----PDDISAEKAYCSDIREVYYSEETHLI 1028
            CQ   II  + P R E   T +++  F       PDD+        D R V+ S+E   +
Sbjct: 531  CQAGMIIDFRVPARGEPTVT-LQLIGFVNDIPSLPDDV------MKDERHVFLSDERVSV 583

Query: 1029 FVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLD 1088
             +  +  +  +     IP  +      H     H H        QLP     R++   LD
Sbjct: 584  ALRYLGDQLHIAHLRAIPDLST----WHSLSPFHFH-----LTYQLPNAKPSRWTPEPLD 634

Query: 1089 SEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWA 1148
               A  R    C++ + +    K+ G  +   L  LD+FAG G    G++++G      A
Sbjct: 635  YRKA--RICVSCMKVQIKKFQRKKEGRGEGPTLRALDVFAGVGAFGLGMEEAGGIKVTHA 692

Query: 1149 IEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVI 1208
            IE    A +  KLN P   +   + N++L     +    E   +      LA   D+  +
Sbjct: 693  IEISPSAAKTLKLNAPNVTVYNQDANLVLHKAAMQYYKPELASTDPPLKSLAD--DKTPL 750

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
               P P  +D I  G PCQ  S +N F ++  SK    +IL  LS+ D F+P+Y L ENV
Sbjct: 751  PPPPHPRDIDVILAGFPCQPHSRLNMFQKANDSK--SNLILVLLSYVDLFKPKYCLFENV 808

Query: 1269 RNFVSFNKGQT---------------FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            R F+ FN   T                +    ++L M YQVR  +L+ G +G+ Q+R R 
Sbjct: 809  RGFLQFNLNATQKDQYSVEGGIDMGGIKFLQYAMLTMDYQVRIMLLQGGHYGLPQTRIRF 868

Query: 1314 FIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGD 1372
            F+ AA     LPE P+P H F A + L+I  ++      V++    APFR+ T+ D IGD
Sbjct: 869  FMVAAKRGYHLPEVPQPTHQFPANDGLEIKFTNGMVIRPVQTNGRSAPFRSTTIEDAIGD 928

Query: 1373 LPAV--------------------------------GNGASKTIMEYQNDPVSWFQKRIR 1400
            LP                                  G       MEY + P + FQ + R
Sbjct: 929  LPRFDWKNPQKLEKTPLPGTRQREDEVLTLDCDPDKGFVGLTGRMEYFSPPRTSFQFKCR 988

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                    HI++ +NE  + R + IP  P AD+    +E  KL   Q  D       ++ 
Sbjct: 989  ERPTSNLQHINRVLNEGTVERVRNIPLEPRADYRS--EENPKLWEWQFSDRA-----SSI 1041

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY- 1519
             +     GL+GRL+ +G F T++T+ +P  K     HP   RILTVRE ARSQGFPD + 
Sbjct: 1042 AKKGFRGGLYGRLNKDGFFQTTVTNVEPTAKQSRVLHPWCHRILTVRELARSQGFPDWFV 1101

Query: 1520 --QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
                 G I+  HRQIGNAVP  +  ALGR L+ AV  K++
Sbjct: 1102 CVSETGDIKTMHRQIGNAVPLPVGAALGRSLRAAVLKKKA 1141


>gi|336367242|gb|EGN95587.1| hypothetical protein SERLA73DRAFT_76683 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1285

 Score =  230 bits (586), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 207/870 (23%), Positives = 345/870 (39%), Gaps = 213/870 (24%)

Query: 786  VEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFL-ANQCRDLELQDIKQTVVVDIR 844
            ++Y+FE + G K FH   +   S T+L  T +   +FL    C D++L+ I Q   +   
Sbjct: 511  IQYLFETSDGHKRFHAQWLAHSSKTLLQETGHPHALFLMTTDCEDIDLEAISQKCNIRQL 570

Query: 845  SV--------------------PWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSL 884
            SV                     W + H   + +    D ARA     +G P        
Sbjct: 571  SVEQDEPPENSFTQENDFFSGLAW-NTHDHSLIDLHPEDVARALAHCTEGEP-------- 621

Query: 885  YWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVY 944
                                  C +CG + S + + +        F + + +Y VHD+VY
Sbjct: 622  ----------------------CFSCGLRNSREAEASPSPLPGCGFTHYSVKYHVHDFVY 659

Query: 945  I---SPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFF 1001
            I   SP+   +D                   + Q++++       +A  +   + VR + 
Sbjct: 660  IKSCSPNILEYD-------------------IGQIVKV-------KAMERPPTITVRLYG 693

Query: 1002 RPDDISAE--------KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI 1053
            R DDI           +   SD R ++ + +   +  + I G C V   +     +    
Sbjct: 694  RYDDIVRRVRGKRDKFQVLGSDDRRLFKTSKFKAVTTDTIDGMCYVMHSSRDDTIDD--- 750

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKG---------KCIEGE 1104
                 +C+H +            H  +   + SL +++    ++          +C E  
Sbjct: 751  -----WCKHDN------------HFYVHQYANSLKTDSLEELEELEEKNFTYCKQCYEDR 793

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
             +     +    +   L  L++F+G GGL  GL  SG   T+WA+E+   A   ++ NH 
Sbjct: 794  KQTLRHTEELLQKNEPLRGLELFSGAGGLGTGLDMSGFVETRWAVEFSPSAAMTYQANHS 853

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
             + +     NV+L+  +       D         L       V+  +P PG VDFI GGP
Sbjct: 854  HTTVYNQCTNVLLQHAI-------DTHEGKNPKPLKGIHSGKVLPGMPKPGDVDFIYGGP 906

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN-KGQ----- 1278
            PCQ FSG+N + ++  + ++  +I   LS+ ++++P YFLLENV   +++  KG+     
Sbjct: 907  PCQSFSGINHWKKA--NDIRSTLICNMLSYVEFYRPSYFLLENVTGILNYRLKGRMEGRS 964

Query: 1279 --------TFRLTLASLLEMGYQVRFGI--LEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
                      +  L SL  +GYQ+RF +  L+AG +G  Q R+R   W A     LPE P
Sbjct: 965  TVDGIEMGVVKFILRSLAALGYQIRFNVLQLQAGQYGAPQGRQRVIFWGAKRGLLLPELP 1024

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANG----APFRAMTVRDTIGDLPAVG------- 1377
             P H F +   K+                     +PFRA+T+ D IGDLP          
Sbjct: 1025 IPTHGFVSRNYKVSTGTRLPRMTRSKDPTDDHLCSPFRAVTINDAIGDLPGFDWINPHLV 1084

Query: 1378 -----------------------------------NGASKTIMEYQNDPVSWFQKRIRGN 1402
                                                G SK  M Y + P++ +QK IRG+
Sbjct: 1085 YPSTSRDKTEKRTRETEHGILAFDAGYEDRRSQKYPGYSKP-MSYAHQPMTRYQKWIRGS 1143

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
               +    ++   +  + R   +P +P AD+H LP +K+ +            + +    
Sbjct: 1144 QKKVKYQYTRRFGDGIIERVINVPLKPNADYHSLP-KKLHMK-----------MFDKKGA 1191

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
              +++GL+GRLD E  F T++T   P  K G+ +       +T    A++    D  +  
Sbjct: 1192 KERFRGLYGRLDGESQFKTALTTVAPNAK-GVTY------FITSYHTAKA----DRNRPE 1240

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
              +  +HRQIGNAVP  LA ALG+ L +A+
Sbjct: 1241 KIVADQHRQIGNAVPVPLALALGKSLGQAL 1270


>gi|449456909|ref|XP_004146191.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cucumis
            sativus]
 gi|449512953|ref|XP_004164187.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cucumis
            sativus]
          Length = 1243

 Score =  229 bits (585), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 197/380 (51%), Gaps = 54/380 (14%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM-------ILAFLSFADYFQPRYF 1263
            LPLPG VD I GGPPCQG SG NRF  +      C M       I+ F+    + +P+Y 
Sbjct: 846  LPLPGDVDVICGGPPCQGISGYNRFRNT-----DCPMDDERNRQIVIFMDIVKFLKPKYV 900

Query: 1264 LLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT 1323
            L+ENV + + FN+    R  ++ L+ M YQ R G + AG FG+ Q R R F+W A P + 
Sbjct: 901  LMENVTDILRFNQASLGRYAVSRLVHMNYQARLGTIAAGCFGLPQFRLRVFLWGARPSEK 960

Query: 1324 LPEWPEPMH-----VFAAPELK--IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV 1376
            LP++P P H      +  PE +   +  D  Q   +         +A+ ++D + DLPAV
Sbjct: 961  LPQFPLPTHEVIVRYWPPPEFERNTVAYDENQPRQLE--------KAVVLQDALSDLPAV 1012

Query: 1377 GNGASKTIMEYQNDPVSWFQKRIRGNMAVLT-------------DHISKEMNELNLIRCQ 1423
             N  S   M Y+  P + FQ+ IR +   +T             DH    + E + +R  
Sbjct: 1013 SNSESWEKMPYEKPPETEFQRYIRSSKYEMTGCETDNRSTDTLYDHQPHLLGEDDHLRVC 1072

Query: 1424 KIPKRPGADWHDLP------DEKVKLSTGQVVDLIP---WCLPNTAKRHNQW--KGLFGR 1472
             IPKR GA++ DLP      D  V+      V L+P     +P+ A    Q   K  FGR
Sbjct: 1073 NIPKRKGANFRDLPGVIVGSDNVVRRDPANEV-LLPSGKLMVPDYAISFEQGRSKRPFGR 1131

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT +T P     V +  HP+QDR+LT+RE AR QGFPD Y+F GS++ ++RQ+
Sbjct: 1132 LWWDETVPTVVTFPSCHSSVAL--HPEQDRVLTIREYARLQGFPDYYKFSGSVKERYRQV 1189

Query: 1533 GNAVPPTLAFALGRKLKEAV 1552
            GNAV  +++ ALG  L  AV
Sbjct: 1190 GNAVAVSVSRALGYSLGLAV 1209



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 5/51 (9%)

Query: 1121 LATLDIFAGCGGLSEGL-QQSGISS----TKWAIEYEEPAGEAFKLNHPES 1166
            L  LD+F+GCGG+S GL   + +SS    ++WA++    A E+ +LNHPE+
Sbjct: 676  LELLDLFSGCGGMSTGLCLGAKLSSIDLISRWAVDSHMSACESLRLNHPET 726


>gi|395332104|gb|EJF64483.1| S-adenosyl-L-methionine-dependent methyltransferase [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1249

 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 222/823 (26%), Positives = 342/823 (41%), Gaps = 145/823 (17%)

Query: 800  HGIIMQRGSHTVLGNTANEREVFLANQ-CRDLELQDIKQTVVVDIRSVPWGHQHRKDIAN 858
            H    +  S T L   +N +E+FL  Q C  + L+D+    VV        + HR     
Sbjct: 491  HVQFYEHSSKTYLEEISNPQELFLCPQYCGTIALRDVLGKAVV-------CNDHRP--GK 541

Query: 859  ADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV-DSMGLGV-GSCHACGTKESE 916
             + +D            P  ++C+ +Y    G+F  +   D   L    +C AC    ++
Sbjct: 542  GEDLD------------PLHFFCRFMYDEVDGSFKDVDTSDGDALDPPDNCPAC-LLSTQ 588

Query: 917  KEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQL 976
            +E +      K    Y  + Y   DY  I         A  +  KA   VG+        
Sbjct: 589  RESDLVPTIVKGGMSYLGSTYHHDDYALI---------ANTKQKKAPALVGM-------- 631

Query: 977  LEIIVPKEPKRA--EVKST-QVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAI 1033
               I+   P+R   E++ T  V VR   R  D+ +E ++ +      +  E  +  +E  
Sbjct: 632  ---IIRIRPRRQDDEIQGTILVTVRLLGRIADLLSEPSFAAPADAFAHERELFMTGLEMD 688

Query: 1034 AGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGS----LKQLPAHIKLRYSSGSLDS 1089
                ++ K+                 C  LH  S+      L + P H  +RY+S SL+ 
Sbjct: 689  VSGNDLIKR-----------------CSVLHHSSRTHMDAWLARSPFHFFVRYASQSLEP 731

Query: 1090 EA------ASRRKKGKCIE---GEDELEVEKQGGASQENHLATL---DIFAGCGGLSEGL 1137
            +        SR+KK    +    EDE+  ++    +++   A L   D FAG G     +
Sbjct: 732  KTWNGLTELSRKKKVPVCQVCFQEDEVRAQQLKAFTRQQPRACLRGFDPFAGVGAFGLPM 791

Query: 1138 QQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197
            + +G      AIE    A    + N P + +     N++LR  ++      +     +  
Sbjct: 792  EATGCIKITHAIEISPSAAATMQKNSPHTTVYNQCSNIVLRYAVKSRAKQWEGSPPLDIQ 851

Query: 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY 1257
            E AA  D       P PG +D I  G PCQ  S +N F ++   K    ++L  LS+ DY
Sbjct: 852  ERAALPDP------PKPGDIDCIVAGFPCQPHSTLNMFQKANDRK--SHLLLNLLSWIDY 903

Query: 1258 FQPRYFLLENVRNFVSFN----KGQTFRLT-----------LASLLEMGYQVRFGILEAG 1302
             QP+Y + ENVR F+++N    +   FR+            + +LL +GYQV F +L+AG
Sbjct: 904  LQPKYCVFENVRGFLNYNLNASQAGRFRMVGGIKMGGLKFFIHALLTLGYQVHFSLLQAG 963

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRSTANGAPF 1361
             +G  Q R R F+ A+     LP +P P H    P+ L I   +  + + V +    APF
Sbjct: 964  QYGTPQRRVRFFLLASQKSYPLPSFPLPTHAVLNPDALSIRFPNGVEINPVPTGDGTAPF 1023

Query: 1362 RAMTVRDTIGDLPAV--------GNGASKTIM---------------EYQNDPVSWFQKR 1398
            RA+ +RD I DL A         G    K +                +Y   P + +QK 
Sbjct: 1024 RAVCIRDAIDDLVAFDWKDPGKNGMKPRKGVFSIECDPKKPYCGPPGDYARPPKNSYQKA 1083

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
             R        H ++      + R   +P +  AD+  LPDE  +           W   N
Sbjct: 1084 CRTKPTTQLQHYTRAFKHAVVSRITNVPLKSRADYRFLPDEHSE-----------WQFRN 1132

Query: 1459 TAK---RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
             A    R     G++GRLD +  F T++T+  P  K     HP   RI T+RE ARSQGF
Sbjct: 1133 PASATARLGFKPGMYGRLDEKEWFHTTVTNVDPTAKQSYVLHPKYRRIFTIRELARSQGF 1192

Query: 1516 PDSYQF--HGS-IQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            PD + F  HG  ++  HRQIGNAVP  +  ALGR+L+ A+  K
Sbjct: 1193 PDWFTFIAHGDRMKTLHRQIGNAVPWQVGEALGRELERAMFEK 1235


>gi|296088422|emb|CBI37413.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  227 bits (579), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 197/379 (51%), Gaps = 42/379 (11%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LP PG VD I GGPPCQG SG NRF    S  S  +   I+ F+    + +P+Y L+ENV
Sbjct: 341  LPRPGDVDVICGGPPCQGISGYNRFRNVDSPLSDERNHQIVIFMDIVKFLKPKYVLMENV 400

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  +K    R  ++ L+ M YQ R G++ AG +G+ Q R R F+W A P ++LP++P
Sbjct: 401  VDLLKLDKASLGRYAISRLVHMKYQARLGMIAAGCYGLPQFRLRVFLWGAHPGESLPQFP 460

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
             P H   A   K      ++ + V +   G P    +A+ +RD I DLPAV N  ++  M
Sbjct: 461  LPTHDVVA---KYWPPSEFECNIV-AYDEGQPRELEKAVVLRDAISDLPAVTNYETRDEM 516

Query: 1386 EYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
             Y   P + FQK IR                G  ++L DH    +NE N +R  +IP+R 
Sbjct: 517  LYGKPPETEFQKYIRSTKDAMAGSSSSGITKGYNSILYDHRPYPLNEDNYLRICQIPRRK 576

Query: 1430 GADWHDLPDEKVKLSTGQVVD-------------LIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ DL    V      V D             L+P C+   +    + K  F RL W+
Sbjct: 577  GANFRDLSGVIVGTDNVAVRDPTMKPILLPSGHPLVPDCV--FSYEQGKSKRPFARLWWD 634

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
               PT +T P    +     HP+QDR+LT+RECAR QGFPD Y+F G+++ ++ QIGNAV
Sbjct: 635  ETVPTVLTFPYLRNQA--ILHPEQDRVLTIRECARLQGFPDYYRFRGTVKERYCQIGNAV 692

Query: 1537 PPTLAFALGRKLKEAVESK 1555
               +A ALG  L  A +++
Sbjct: 693  AFPVARALGYMLGMAFQNQ 711



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)

Query: 1113 GGASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLNHPES 1166
            G    +  LA LD+++GCGG+S GL      S     TKWA+++++ A E+ KLNHPE+
Sbjct: 160  GCKPDKAELALLDLYSGCGGMSTGLCLGAKLSCVNLVTKWALDFDKSACESLKLNHPET 218


>gi|359474666|ref|XP_002267685.2| PREDICTED: uncharacterized protein LOC100255190 [Vitis vinifera]
          Length = 1789

 Score =  226 bits (576), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 197/379 (51%), Gaps = 42/379 (11%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LP PG VD I GGPPCQG SG NRF    S  S  +   I+ F+    + +P+Y L+ENV
Sbjct: 1401 LPRPGDVDVICGGPPCQGISGYNRFRNVDSPLSDERNHQIVIFMDIVKFLKPKYVLMENV 1460

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  +K    R  ++ L+ M YQ R G++ AG +G+ Q R R F+W A P ++LP++P
Sbjct: 1461 VDLLKLDKASLGRYAISRLVHMKYQARLGMIAAGCYGLPQFRLRVFLWGAHPGESLPQFP 1520

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
             P H   A   K      ++ + V +   G P    +A+ +RD I DLPAV N  ++  M
Sbjct: 1521 LPTHDVVA---KYWPPSEFECNIV-AYDEGQPRELEKAVVLRDAISDLPAVTNYETRDEM 1576

Query: 1386 EYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
             Y   P + FQK IR                G  ++L DH    +NE N +R  +IP+R 
Sbjct: 1577 LYGKPPETEFQKYIRSTKDAMAGSSSSGITKGYNSILYDHRPYPLNEDNYLRICQIPRRK 1636

Query: 1430 GADWHDLPDEKVKLSTGQVVD-------------LIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ DL    V      V D             L+P C+   +    + K  F RL W+
Sbjct: 1637 GANFRDLSGVIVGTDNVAVRDPTMKPILLPSGHPLVPDCV--FSYEQGKSKRPFARLWWD 1694

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
               PT +T P    +     HP+QDR+LT+RECAR QGFPD Y+F G+++ ++ QIGNAV
Sbjct: 1695 ETVPTVLTFPYLRNQA--ILHPEQDRVLTIRECARLQGFPDYYRFRGTVKERYCQIGNAV 1752

Query: 1537 PPTLAFALGRKLKEAVESK 1555
               +A ALG  L  A +++
Sbjct: 1753 AFPVARALGYMLGMAFQNQ 1771



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 5/59 (8%)

Query: 1113 GGASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLNHPES 1166
            G    +  LA LD+++GCGG+S GL      S     TKWA+++++ A E+ KLNHPE+
Sbjct: 1220 GCKPDKAELALLDLYSGCGGMSTGLCLGAKLSCVNLVTKWALDFDKSACESLKLNHPET 1278


>gi|392571000|gb|EIW64172.1| S-adenosyl-L-methionine-dependent methyltransferase [Trametes
            versicolor FP-101664 SS1]
          Length = 1239

 Score =  226 bits (575), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 238/899 (26%), Positives = 367/899 (40%), Gaps = 173/899 (19%)

Query: 754  YKKAIVHGEVVSLGSAVLVEV------------DELDQLPVIYFV-EYMFEAT-----GG 795
            +   IV G    +G  V+V+             D+L +LP    + +Y + A        
Sbjct: 407  WSAVIVDGVTYEIGECVVVQANTYRKRPPRDLPDDLTELPATAIIADYFWFAKIIYIDQH 466

Query: 796  CKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKD 855
             +  H    +  S T L   ++  EVFL   C D++                      + 
Sbjct: 467  KRTLHVQWYEHSSKTYLDEISDPHEVFLWPTCDDIDA---------------------RI 505

Query: 856  IANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL-----GVGSCHAC 910
            +     + RA   +R    L  EY+C+  Y  E G+F  +   ++ L        +C  C
Sbjct: 506  VVGKATIHRAPPADRDFGAL--EYFCRFAYHEEDGSFQDIDDRTIALLQTVHPPENCATC 563

Query: 911  GTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKP 970
              +E + E E+  V    +  YG   Y V DY   +                    G  P
Sbjct: 564  HFQEQQTE-ESACVVEGGALHYGGHVYHVDDYALYA------------------ASGGGP 604

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFV 1030
              V ++ EI  P+ P R+   S +++V R  R  D+          RE++ +  T  I +
Sbjct: 605  ACVGRIAEIHPPR-PARSST-SPKIRVARLGRRSDVGYFPNKMVHERELFLTGPTETIEL 662

Query: 1031 EAIA--GKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLD 1088
            +A A    C V  ++D+               E   D S  +     AH +L   S    
Sbjct: 663  DAKALLKPCVVVHRSDV------------LDLEAWFDISPFNFY---AHYRLPTLSSPWA 707

Query: 1089 SEAASRRKK----GKCIEGEDE-LEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGIS 1143
                 RR        C+E  +E  ++  +  +  +  L T D F G G     +++ G  
Sbjct: 708  QREVLRRTDVLACDICLEQHNERFQLLSELSSGGQVCLRTFDPFGGVGAFGLAMEELGCM 767

Query: 1144 STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR-AVMEKCGDAEDCVSTSEAAELAAS 1202
                A+E    A    + N PE+++     N++ + AV    G+         ++++   
Sbjct: 768  KLTHAVEITPSAALTLRKNSPETVVFNQCSNLVFQYAVKYHAGNLS-------SSDMVRD 820

Query: 1203 LDENV-INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPR 1261
            L +N  I   P PG +D I  G PCQ  S +N F ++   K    +IL  LS+ D+ +P+
Sbjct: 821  LHDNTPIGKPPCPGDIDCIVAGFPCQPHSQLNMFKKANDRKTN--LILNLLSWVDFLRPK 878

Query: 1262 YFLLENVRNFVSFN---------------KGQTFRLTLASLLEMGYQVRFGILEAGAFGV 1306
            Y   ENVR F+S                 K    +    SLL MGYQVRFG+L+AG +G 
Sbjct: 879  YCFFENVRGFLSSTLHARQASKYRVEGGIKMGGLKFLTRSLLAMGYQVRFGLLQAGHYGT 938

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRSTANG-APFRAM 1364
             Q+R R F+ AA     LP+ P+P H F   + L+I  S +        TANG APF+ +
Sbjct: 939  PQARVRFFLVAAQIGYPLPKLPQPTHDFPLQDGLEIKFSPDLPPIRPILTANGTAPFKFV 998

Query: 1365 TVRDTIGDLPAV----------GNGASKT---------------------------IMEY 1387
            + ++ I DLP             +G S T                            + Y
Sbjct: 999  STKEAIEDLPVFDWRDPHKIMRSSGTSHTREGVLTLECDVEQQPRGCGLTGPCPSRSLSY 1058

Query: 1388 QND-PVSWFQKRIRGNMAVLTDHISK-----EMNELNLIRCQKIPKRPGADWHDLPDEKV 1441
            + D P + FQ R R        HI++        ++ L R   IP R GAD+ +L     
Sbjct: 1059 RFDKPRNSFQARCRSRPTRDLQHITRVTPACTRTDIYLNRVVNIPLRAGADYREL---NA 1115

Query: 1442 KLSTGQVVDLIPWCLPNTAKRHNQWK-GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQ 1500
            +L   Q         P +A   + ++ G++GRLD +  F T++T+  P  K     HP  
Sbjct: 1116 RLWEWQSAH------PTSAMARDGFRPGMYGRLDEDKWFHTTVTNVSPTAKQSRVIHPTS 1169

Query: 1501 DRILTVRECARSQGFPDSYQFH---GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
             RILTVRE ARSQGFPD + FH   G+++   R IGNAVP  ++ AL R+L+EA+  KR
Sbjct: 1170 KRILTVRELARSQGFPDWFVFHAVDGNVKTLQRHIGNAVPWPVSVALARELREALLKKR 1228


>gi|388890583|gb|AFK80345.1| chromomethylase 3 [Nicotiana benthamiana]
          Length = 740

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 199/373 (53%), Gaps = 45/373 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQS--TWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V  I GGPPCQG SG NRF  S       + + +  F+   ++  PR+ L+ENV
Sbjct: 354  LPLPGEVAVICGGPPCQGVSGFNRFRNSKNPLGDSKNKQLETFMDIVEFLNPRFVLMENV 413

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQ R G++ AGA+G+ Q R+R F+W A P + LP++P
Sbjct: 414  VDLVKFADGFLGRYALGRLVGMDYQARMGMMVAGAYGLPQFRRRVFMWGALPSENLPQYP 473

Query: 1329 EPMHVFAAP-------ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H            EL ++  D     A++S A    F    ++D I DLP V N   
Sbjct: 474  LPTHNVVVRGGMPKEFELNVVAYD----EALKSRAKERTF----LKDAISDLPPVENDEP 525

Query: 1382 KTIMEYQNDPVSWFQKRIRGNM-----AVLTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436
            +  M Y ++P S FQ  IR        +VL DH    +NE +  R  +IPKR GA++ DL
Sbjct: 526  RDEMPYIDEPKSAFQHFIRSRRDGALGSVLYDHRPLRLNEDDYERVCQIPKRKGANFRDL 585

Query: 1437 PD---------------EKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            P                E+VK+++G+   L+P + +  T  R    K  FGRL W+   P
Sbjct: 586  PGVRVRANNTVELDPDVERVKVASGK--PLVPDYAI--TFVRGTSTKP-FGRLWWDEIVP 640

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T +T  +P  +V    HP+QDR+LT+RE AR QGFPD Y+  G I+ ++ Q+GNAV   +
Sbjct: 641  TVVTRAEPHNQV--ILHPEQDRVLTIRENARLQGFPDYYKLTGPIKERYMQVGNAVAVPV 698

Query: 1541 AFALGRKLKEAVE 1553
            A ALG  L  A+E
Sbjct: 699  ARALGYSLALALE 711



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 1117 QENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            Q+  +  LD+++GCG +S GL       G+   TKWA++  + A ++ K NHPE+
Sbjct: 172  QKLEMNLLDLYSGCGAMSTGLCLGADIGGVKLVTKWAVDLNQYACDSLKWNHPET 226


>gi|297737359|emb|CBI26560.3| unnamed protein product [Vitis vinifera]
          Length = 847

 Score =  225 bits (574), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 193/380 (50%), Gaps = 49/380 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LP PG  D I GGPPCQG SG NR     S +   +   I+ F+   ++ +P+Y L+ENV
Sbjct: 449  LPRPGDADVICGGPPCQGISGYNRHRNADSPFDDERNRQIIVFMDIVNFLKPKYVLMENV 508

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F KG   R  L+ L+ M YQ R GI+ AG +G+ Q R R F W A P + LP++ 
Sbjct: 509  VDILQFAKGSVGRYALSRLVRMNYQARLGIMAAGCYGLPQYRLRVFFWGAHPDERLPQFA 568

Query: 1329 EPMH----VFAAP---ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H     + AP   E  I+  D  Q   +         +A+ + D I DLP V N  +
Sbjct: 569  LPTHDVILKYGAPTAFERNIVAYDEGQSPDLE--------KALVLGDAIADLPPVSNNET 620

Query: 1382 KTIMEYQNDPVSWFQKRIRGN----------------MAVLTDHISKEMNELNLIRCQKI 1425
            +  M Y+  P + FQK IR                   +VL DH+   +NE + +R  +I
Sbjct: 621  REQMSYRRPPETEFQKYIRATKWEMMGSACKGTRKAEKSVLYDHLPLPLNEDDYLRVCRI 680

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIP----------WCLPNTAKRHNQWKGL--FGRL 1473
            PK+ GA++ DLP   V +    V    P            +P+ A   ++ K    F RL
Sbjct: 681  PKKKGANFRDLPG--VVVGANNVARRDPKTEMELPSGKQMVPDYALNFSEGKSTKPFARL 738

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             W+   PT +T P P  +  +  HP+QDR+LTVRE AR QGFPD Y+F G ++ ++ QIG
Sbjct: 739  WWDETVPTVLTKPDPHCQAYL--HPEQDRVLTVRESARLQGFPDYYKFCGQVKERYCQIG 796

Query: 1534 NAVPPTLAFALGRKLKEAVE 1553
            NAV   +A ALG  +  AV+
Sbjct: 797  NAVAVPVARALGYAMGLAVQ 816



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 996  KVRRFFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIF 1054
            +V+ FFRP+D +  E+    + + ++YS   +   ++ I  K  + +    P+ N  +  
Sbjct: 157  RVQWFFRPEDTVMEEEGAFHEKKRLFYSNLVNDNLLDCIVSKVNIIQIT--PSVNLKS-- 212

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEA-ASRRKKGKCIEG--EDELEVEK 1111
            + I  C+  +D     +K L  +    + +  +D+ A  +      C++    + ++ E 
Sbjct: 213  KSILPCDFYYD-----MKYLIDYST--FCTMEVDNSADRTNLSTSACLKTVHMNGIKPEF 265

Query: 1112 QGGASQENH---LATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNH 1163
               +S + +   LA LDI++GCGG+S GL    + SG+   T+WA++  + A E+ KLNH
Sbjct: 266  NRMSSHKPYKPELALLDIYSGCGGMSTGLCLGAKLSGVDLVTRWALDINKSACESLKLNH 325

Query: 1164 PES 1166
            PE+
Sbjct: 326  PET 328


>gi|359490000|ref|XP_002274960.2| PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Vitis
            vinifera]
          Length = 1298

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 193/380 (50%), Gaps = 49/380 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LP PG  D I GGPPCQG SG NR     S +   +   I+ F+   ++ +P+Y L+ENV
Sbjct: 900  LPRPGDADVICGGPPCQGISGYNRHRNADSPFDDERNRQIIVFMDIVNFLKPKYVLMENV 959

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F KG   R  L+ L+ M YQ R GI+ AG +G+ Q R R F W A P + LP++ 
Sbjct: 960  VDILQFAKGSVGRYALSRLVRMNYQARLGIMAAGCYGLPQYRLRVFFWGAHPDERLPQFA 1019

Query: 1329 EPMH----VFAAP---ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H     + AP   E  I+  D  Q   +         +A+ + D I DLP V N  +
Sbjct: 1020 LPTHDVILKYGAPTAFERNIVAYDEGQSPDLE--------KALVLGDAIADLPPVSNNET 1071

Query: 1382 KTIMEYQNDPVSWFQKRIRGN----------------MAVLTDHISKEMNELNLIRCQKI 1425
            +  M Y+  P + FQK IR                   +VL DH+   +NE + +R  +I
Sbjct: 1072 REQMSYRRPPETEFQKYIRATKWEMMGSACKGTRKAEKSVLYDHLPLPLNEDDYLRVCRI 1131

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIP----------WCLPNTAKRHNQWKGL--FGRL 1473
            PK+ GA++ DLP   V +    V    P            +P+ A   ++ K    F RL
Sbjct: 1132 PKKKGANFRDLPG--VVVGANNVARRDPKTEMELPSGKQMVPDYALNFSEGKSTKPFARL 1189

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             W+   PT +T P P  +  +  HP+QDR+LTVRE AR QGFPD Y+F G ++ ++ QIG
Sbjct: 1190 WWDETVPTVLTKPDPHCQAYL--HPEQDRVLTVRESARLQGFPDYYKFCGQVKERYCQIG 1247

Query: 1534 NAVPPTLAFALGRKLKEAVE 1553
            NAV   +A ALG  +  AV+
Sbjct: 1248 NAVAVPVARALGYAMGLAVQ 1267



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 5/51 (9%)

Query: 1121 LATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LA LDI++GCGG+S GL    + SG+   T+WA++  + A E+ KLNHPE+
Sbjct: 729  LALLDIYSGCGGMSTGLCLGAKLSGVDLVTRWALDINKSACESLKLNHPET 779


>gi|42566945|ref|NP_193637.2| chromomethylase 2 [Arabidopsis thaliana]
 gi|322510132|sp|Q94F87.3|CMT2_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase CMT2; AltName:
            Full=Chromomethylase 2; AltName: Full=Protein
            CHROMOMETHYLASE 2
 gi|332658726|gb|AEE84126.1| chromomethylase 2 [Arabidopsis thaliana]
          Length = 1295

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 195/372 (52%), Gaps = 38/372 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V  I GGPPCQG SG NR     S  +  + + I+ F+   +Y +P Y L+ENV
Sbjct: 900  LPLPGRVGVICGGPPCQGISGYNRHRNVDSPLNDERNQQIIVFMDIVEYLKPSYVLMENV 959

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  +KG   R  L+ L+ M YQ R GI+ AG +G+SQ R R F+W A P+  LP +P
Sbjct: 960  VDILRMDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQFRSRVFMWGAVPNKNLPPFP 1019

Query: 1329 EPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTI 1384
             P H V     L +    N     V + A G P    +A+ ++D I DLP V N   +  
Sbjct: 1020 LPTHDVIVRYGLPLEFERN-----VVAYAEGQPRKLEKALVLKDAISDLPHVSNDEDREK 1074

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLT---------------DHISKEMNELNLIRCQKIPKRP 1429
            + Y++ P + FQ+ IR     LT               DH    +NE +  R  +IPKR 
Sbjct: 1075 LPYESLPKTDFQRYIRSTKRDLTGSAIDNCNKRTMLLHDHRPFHINEDDYARVCQIPKRK 1134

Query: 1430 GADWHDLPDEKVKLST-GQVVDLIPWCLPNTAK---------RHNQWKGLFGRLDWEGNF 1479
            GA++ DLP   V+ +T  +   + P  LP+            +  + K  F RL W+   
Sbjct: 1135 GANFRDLPGLIVRNNTVCRDPSMEPVILPSGKPLVPGYVFTFQQGKSKRPFARLWWDETV 1194

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT +T P    +     HP+QDR+LT+RE AR QGFPD +QF G+I+ ++ QIGNAV  +
Sbjct: 1195 PTVLTVPTCHSQA--LLHPEQDRVLTIRESARLQGFPDYFQFCGTIKERYCQIGNAVAVS 1252

Query: 1540 LAFALGRKLKEA 1551
            ++ ALG  L  A
Sbjct: 1253 VSRALGYSLGMA 1264



 Score = 47.8 bits (112), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 35/231 (15%)

Query: 949  HFTWDKAEGETFKAGRNVGLK----PYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPD 1004
            H++  K +G TF  G    +K       V Q++E        +     +  +V+ F+R  
Sbjct: 569  HYSQAKVDGHTFSLGDFAYIKGEEEETHVGQIVEFF------KTTDGESYFRVQWFYRAT 622

Query: 1005 DISAEK-AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFF-CEH 1062
            D   E+ A   D R ++YS   +   V+ +  K  V + +        +I    +F  E+
Sbjct: 623  DTIMERQATNHDKRRLFYSTVMNDNPVDCLISKVTVLQVSPRVGLKPNSIKSDYYFDMEY 682

Query: 1063 LHDPSKGSLKQLP--AHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENH 1120
              + S     + P  +  KL   +  + +E+     K K   GE                
Sbjct: 683  CVEYSTFQTLRNPKTSENKLECCADVVPTESTESILKKKSFSGE---------------- 726

Query: 1121 LATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            L  LD+++GCGG+S GL    + SG+   TKWA++    A ++ KLNHP +
Sbjct: 727  LPVLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNT 777


>gi|403417903|emb|CCM04603.1| predicted protein [Fibroporia radiculosa]
          Length = 1212

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 209/811 (25%), Positives = 334/811 (41%), Gaps = 146/811 (18%)

Query: 797  KLFHGIIMQRGSHTVLGNTANEREVFLANQCR--DLELQDIKQTVVVDIRSVPWGHQHRK 854
            K  H   M+  S T+L    + +E+FL   C   +++L DI     +D  +V W  +   
Sbjct: 484  KKVHCQWMEHASKTMLEEIGDPQELFLCGTCTKPNVDLHDI-----LDKATVCWNSRRNN 538

Query: 855  DIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGV------GSCH 908
            ++A                  P+E+YC S ++ E  A +    D   +         +C 
Sbjct: 539  NLA------------------PSEFYC-SFFYDEPNALYRDLDDPNSIAALASEPPENCP 579

Query: 909  ACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGL 968
             C   E ++E E      +    YG   Y VHD+  +        +AE +   A      
Sbjct: 580  VCLLSE-QREHERVGQLIEDGVAYGGLNYHVHDFALL--------RAENDVDSAD----- 625

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDIS--AEKAYCSDIREVYYS-EET 1025
                + Q+L++      + A +    + VR   R  DI          D + ++ + EE 
Sbjct: 626  ----IVQILDVRFSTRARSAHL--AVMSVRMLGRIGDIMHICPHGIIKDEQHLFLTDEEI 679

Query: 1026 HLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSG 1085
            H + V  +  +C V   +   +  +P I + +                 P+H+  R+   
Sbjct: 680  HDVPVTRLVNRCYVLHPD---SARSPGIDEWLSLS--------------PSHMYARFHFP 722

Query: 1086 SLDSEAASRRKK---------GKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEG 1136
            +      S RK+          KCI+ ++E     +   S  N L   D F G G    G
Sbjct: 723  TRTPSNWSERKRLKYWDVFICPKCIKDDNEQVANLRQFLSPSNQLKAFDPFGGVGAFGLG 782

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEA 1196
            +++SG      A+E    A    + N P              A+    G         EA
Sbjct: 783  MEESGCVKMVHAVEISPSAARTLQNNSPNY------------AIKTHAG------HQVEA 824

Query: 1197 AELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFAD 1256
             E  +   +  + + P PGQ+D I  G PCQ  S +N F ++   K    +IL  LS+ D
Sbjct: 825  PETISRRGQ--LPDPPKPGQIDCIVAGFPCQPHSRLNMFQRANDRK--SHLILNLLSWID 880

Query: 1257 YFQPRYFLLENVRNFVSFNKGQT---------------FRLTLASLLEMGYQVRFGILEA 1301
            + +P+Y  LENVR F+S++   T                +  + +LL M YQVR G+L+A
Sbjct: 881  FLRPKYCFLENVRGFLSYSLNATQAGRYRVEGGIAMGGLKFVIHALLAMNYQVRMGLLQA 940

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRSTANGAP 1360
              +G  Q+R R F+ AA     LP  P+P H F   + L + L++      V + +  AP
Sbjct: 941  AHYGTPQTRVRFFLIAARHSYLLPSMPQPTHSFPVKDALALKLTNGGMALPVLTGSGLAP 1000

Query: 1361 FRAMTVRDTIGDLPA------VGNGASKTIMEYQNDPVSWFQ----KRIRGNMAVLTDHI 1410
            F+ +++ D I DLP       +  G    +  Y N P+        K+ R        H 
Sbjct: 1001 FKYISIDDAISDLPREIPKAFLAAGIGGVVRIYLNSPIVVMNQSLYKKCREKGTRDLQHF 1060

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN---TAKRHNQWK 1467
            ++ + +  + R  +IP    AD+  L +E           L  W   N      R     
Sbjct: 1061 TRVLPDKVIQRVVEIPLEARADYTRLREE-----------LWEWQFSNPTSAVARDGFRA 1109

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG---S 1524
            GL+GRLD    F T++T+ +P  K     +P   R++TVRE ARSQGFPD + F+     
Sbjct: 1110 GLYGRLDKNEWFQTTVTNVEPTAKQSRVLNPYCKRVVTVRELARSQGFPDHFVFYAENSD 1169

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            ++  HRQIGNAVP  +  ALGR+L++A  +K
Sbjct: 1170 VKTMHRQIGNAVPWPVGAALGRELRDAALTK 1200


>gi|297804242|ref|XP_002870005.1| chromomethylase 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297315841|gb|EFH46264.1| chromomethylase 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1253

 Score =  224 bits (571), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/376 (36%), Positives = 195/376 (51%), Gaps = 46/376 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  I GGPPCQG SG NR+    S  +  + + I+ F+   +Y +P Y L+ENV
Sbjct: 858  LPLPGCVGVICGGPPCQGISGYNRYRNVDSPLNDERNQQIIVFMDIVEYLKPSYVLMENV 917

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  +KG   R  L+ L+ M YQ R GI+ AG +G+SQ R R F+W A P+  LP +P
Sbjct: 918  VDILRLDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQFRSRVFMWGAVPNKNLPPFP 977

Query: 1329 EPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTI 1384
             P H V     L +    N     V +   G P    +A+ ++D I DLP V N   +  
Sbjct: 978  LPTHDVIVRYGLPLEFERN-----VVAYVEGQPRKLEKALVLKDAISDLPHVSNDEDREK 1032

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLT---------------DHISKEMNELNLIRCQKIPKRP 1429
            + Y++ P + FQ+ IR     LT               DH    +NE +  R  +IPKR 
Sbjct: 1033 LPYESPPETDFQRYIRSTKRDLTGSATDNSNKRKMLLHDHRPFHINEDDYARVCQIPKRK 1092

Query: 1430 GADWHDLPD--------------EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            GA++ DLP               E V L +G+   L+P  + N   +  + K  F RL W
Sbjct: 1093 GANFRDLPGLIVRNNTVCRDPSMEPVILPSGK--PLVPGYVFNF--QQGKSKRPFARLWW 1148

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +T P    +     HP+QDR+LT+RE AR QGFPD +QF G+I+ ++ QIGNA
Sbjct: 1149 DETVPTVLTVPTCHSQA--LLHPEQDRMLTIRESARLQGFPDYFQFCGTIKERYCQIGNA 1206

Query: 1536 VPPTLAFALGRKLKEA 1551
            V  +++ ALG  L  A
Sbjct: 1207 VAVSVSRALGYSLGMA 1222



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 35/231 (15%)

Query: 949  HFTWDKAEGETFKAGRNVGLK----PYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPD 1004
            H+   K +G TF  G    +K       V ++LE        +   + +  +V+ F+R  
Sbjct: 527  HYLQAKVDGHTFSLGDFACIKGEEEETHVGKILEFF------KTTDEESYFRVQWFYRAT 580

Query: 1005 D-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFF-CEH 1062
            D +  ++A   D + ++YS   +   V+ +  K  V + + +      +I    +F  E+
Sbjct: 581  DTVMKQQATNHDKKRLFYSTVMNDNPVDCLISKVTVLQVSPMAGLKPNSIKSDYYFDMEY 640

Query: 1063 LHDPSKGSLKQLP--AHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENH 1120
              + S     + P  +  KL   +  + +E+     K K   GE                
Sbjct: 641  CVEYSTFQTLKNPKSSENKLECCADVVPTESTESILKKKIFSGE---------------- 684

Query: 1121 LATLDIFAGCGGLSEGL----QQSGISS-TKWAIEYEEPAGEAFKLNHPES 1166
            L  LD+++GCGG+S GL    + SG+   TKWA++    A E+ KLNHP +
Sbjct: 685  LPVLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNMAACESLKLNHPNT 735


>gi|426201069|gb|EKV50992.1| hypothetical protein AGABI2DRAFT_113733 [Agaricus bisporus var.
            bisporus H97]
          Length = 1362

 Score =  224 bits (570), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 195/650 (30%), Positives = 286/650 (44%), Gaps = 106/650 (16%)

Query: 970  PYVVCQLLEIIVP---KEPKRAEVKSTQVKVRRFFR-PDDISAEKAYCSDIREVYYSEET 1025
            P  + Q++EII     + P R  VK    KV R +     I        D R V+ ++E 
Sbjct: 702  PSKIGQIIEIIRSTGGRAPLRLRVK----KVGRLWDLVGKIVNPTEEIKDERHVFLTDEE 757

Query: 1026 HLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSG 1085
             +I    I  KC               +F H  F + L    +  L   P H  L+Y   
Sbjct: 758  AVIPYADIITKC--------------TVFSHESFGQRLS--LRNWLNMSPTHFYLQYHFP 801

Query: 1086 SLDSEAASRRKK------GKCIEGEDE-----LEVEKQGGASQENHLATLDIFAGCGGLS 1134
            +L  EA   +K+        C     E      +++      QEN +A LD+F G G  S
Sbjct: 802  TLQPEAWDEKKRVSFRDLSVCSSCTKEALAKYYDMQTFKTKMQENPMAVLDLFGGAGAFS 861

Query: 1135 EGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC-NVILRAVMEKCGDAEDCVS 1192
             GL++ S       A+E    A +  + N      +IN C N +L+  ++K    E    
Sbjct: 862  LGLKEGSECLKVTHALEISPSAAKTIRRNC-AGTQVINQCVNAVLKYAIKKHEGHE---- 916

Query: 1193 TSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFL 1252
             +   +L  S  +  I  +P PG VD I  G PCQ  SG+N F   T +  +  ++L  L
Sbjct: 917  VNRPLQLWDS--KTPIPEVPRPGSVDLITAGFPCQTHSGLNMFK--TANDPKSSLMLTAL 972

Query: 1253 SFADYFQPRYFLLENVRNFVSFN------------KGQT---FRLTLASLLEMGYQVRFG 1297
            S+ DY++P+Y  LENV  F+ FN             G T    +L + +LL+M YQVR+ 
Sbjct: 973  SWVDYYRPKYVYLENVAGFLRFNLDTRQAGLHRVEGGVTMGGLKLLVRALLDMRYQVRYS 1032

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA-APELKIMLSDNYQYSAVRSTA 1356
            +L+AG +G  Q R R F+ A+     LP  P+P H F  + +L I + +      +R   
Sbjct: 1033 LLQAGHYGTPQRRIRFFLIASQSTLPLPNLPQPTHDFPQSHKLFITMPNGDIIRPIRPGP 1092

Query: 1357 NGAPFRAMTVRDTIGDLPA---------------VGNGASKTIM--------------EY 1387
              AP   +++ D IGDLP                +  G    ++              EY
Sbjct: 1093 GTAPHPFVSIEDAIGDLPKFDWKRPGQTRRPRDDLMRGDIPALVCEHKKSHCGYEGRKEY 1152

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDL-PDEKVKLSTG 1446
              +P + +QK  R        H +K + E  + R   I  +PGAD+  L PD    +   
Sbjct: 1153 DCEPRTKYQKDAREKETTNLQHFTKTVKERKVERVLGISLKPGADYRSLRPD----MHEW 1208

Query: 1447 QVVDLIPWCLP-NTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILT 1505
            Q      W  P ++  R N   G +GRLD +  FPT +T+  PM K     HP   R++T
Sbjct: 1209 Q------WANPISSTGRQNFRPGWYGRLDKDSCFPTIVTNIDPMAKQCRVLHPSCKRMVT 1262

Query: 1506 VRECARSQGFPDSY---QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            VRE AR+QGFPD +    F G++   HRQIGNAVP  L  ALGR+ +E +
Sbjct: 1263 VRELARAQGFPDWFVFESFRGNVVTMHRQIGNAVPLPLGRALGREFQETL 1312


>gi|347839917|emb|CCD54489.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 983

 Score =  224 bits (570), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 215/827 (25%), Positives = 351/827 (42%), Gaps = 140/827 (16%)

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            + H    +RG  T++G  A  R++F+ ++C ++   +IK  + VD R          D A
Sbjct: 1    MAHVRYFERGCDTIIGEAACPRQLFVTSRCANILKTEIKAKIRVDFRG-------ESDNA 53

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF----ILPVDSMGLGVGSCHACGTK 913
               ++     E  +       Y+ +  Y     +F     I+  D   L V  C  C  K
Sbjct: 54   GGSEIHLIEEEYYRSA---DRYFYRFRYDISSESFTEVEEIVKKDQKTL-VEECECCSLK 109

Query: 914  ESEKEKE-------TFKVHSK--TSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGR 964
            +  +E++        F    K  T F+Y    Y + D+VY     F      G       
Sbjct: 110  KVMREEKYRPLRILNFDEEQKVATRFIYKGTRYELKDFVY-----FILKPTSGSR----- 159

Query: 965  NVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRF------FRPDDISAEKAY-CSDIR 1017
              G  PY + Q+ +  +     + +V+ T     R+       RP++      +   D R
Sbjct: 160  --GPHPYNIGQIKDARITSLRGQLDVQLTVDNYERYDDYFQPKRPEEGGVNVPFPIHDNR 217

Query: 1018 EVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHL--HDPSKGS----- 1070
             V+    + L+  + + G C VR  + I   N        F+ +    +D  K S     
Sbjct: 218  RVF-RWNSKLVNPKDLDGHCFVRHIHHIDDLNNYKDLDDTFWVQDYIPYDLKKDSITVED 276

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
            LK +P    L Y  G+            + +E E + EV K  G        TLD+F+G 
Sbjct: 277  LKLMPKE-HLSYLKGN-----------KQRLERERKQEVNKMHGTK----FNTLDVFSGA 320

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            GGLS+GL +SG+    +AIE +  A + F  N P +++   + N  L   M+        
Sbjct: 321  GGLSQGLHESGVIGNSYAIESDTVACQTFAKNFPSAIVYNYDANKFLERAMK-------- 372

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEM- 1247
            +       +A  +  N++  +P  G +D I GGPPCQG+S  NR N       +  C M 
Sbjct: 373  IDAGYVEGIAYDIAGNLMPKMPAKGDIDMIVGGPPCQGWSRANRKNNPNKILKEPICPMR 432

Query: 1248 --ILAFLSFADYFQPRYFLLENV----------RNFVSFN------KGQTFRLTLASLLE 1289
              I  FLS+ D+++P+YFLLENV           +  +++      K    +     L  
Sbjct: 433  EAIATFLSYVDFYRPKYFLLENVPGIKHHPLNGNDIPNYSPDGGPLKNGAMKFIFRFLTS 492

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
            +GYQ +   L+AGA+GV  SRKR  IWA  P   LP++PEP +VF +      +  N  Y
Sbjct: 493  LGYQCQHATLQAGAYGVPSSRKRVIIWACLPGHKLPKYPEPTNVFKS------VPRNPPY 546

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVG------------------NGASKTIMEYQNDP 1391
                     AP   + + D I DL  +G                   G+ K I    + P
Sbjct: 547  -----LRRSAPHWPINIGDCISDLSLIGVENPHEETKHSTSKNKKNVGSGKQIC--ASTP 599

Query: 1392 VSWFQKRIRGNMAV--LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
             S +Q+R++ + +   L +H++  ++ +   R + +P   GAD+  + +   KL T  + 
Sbjct: 600  RSEYQRRVQNSDSCQPLHNHVTGRISVIQNERVRTVPLEAGADYRRMDE---KLMTKAMR 656

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
            +++     N   ++ + +G +GRL  +  F    T      +     HP   R+ T+RE 
Sbjct: 657  EVLEEMGKNKNYQNKKLEGRYGRLSADDLFKIFTT-----TRDKWTLHPYLPRVFTIREL 711

Query: 1510 ARSQGFPDSYQFHGSIQHKH---RQIGNAVPPTLAFALGRKLKEAVE 1553
            AR  GFPDS+ +   I       +QIGNAVPP  A ALG +L++ ++
Sbjct: 712  ARGMGFPDSFVWDMIITKLSDVLKQIGNAVPPPFARALGNELRKVLQ 758


>gi|169977312|emb|CAQ18903.1| chromomethylase [Nicotiana sylvestris]
 gi|169977314|emb|CAQ18904.1| chromomethylase [Nicotiana sylvestris]
 gi|169977316|emb|CAQ18905.1| chromomethylase [Nicotiana sylvestris]
 gi|169977318|emb|CAQ18906.1| chromomethylase [Nicotiana sylvestris]
          Length = 741

 Score =  224 bits (570), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 199/373 (53%), Gaps = 45/373 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQS--TWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V+ I GGPPCQG SG NRF  S       + + +  F+   ++  PR+ L+ENV
Sbjct: 355  LPLPGEVEVICGGPPCQGVSGFNRFRNSKNPLGDSKNKQLETFMDIVEFLNPRFVLMENV 414

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQ R G++ AGA+G+ Q R+R F+W A P + LP++P
Sbjct: 415  VDLVKFADGFLGRYALGRLVGMNYQTRMGMMVAGAYGLPQFRRRVFMWGALPSEKLPQYP 474

Query: 1329 EPMHVFAAP-------ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H            EL ++  D      ++        R + ++D I DLP V N   
Sbjct: 475  LPTHNVVVRGGMPKEFELNVVAYDEALKVELK--------RELFLKDAISDLPPVENDEP 526

Query: 1382 KTIMEYQNDPVSWFQKRIR----GNM-AVLTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436
            K  M Y ++P S FQ  IR    G + +VL DH    +NE +  R  +IPKR GA++ DL
Sbjct: 527  KDEMPYIDEPKSAFQHFIRSRRDGTLGSVLYDHRPLRLNEDDYERVCQIPKRKGANFRDL 586

Query: 1437 PD---------------EKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            P                E+VK+++G+   L+P + +  T  R    K  FGRL W+   P
Sbjct: 587  PGVRVRANNTVELDPDVERVKVASGK--PLVPDYAI--TFVRGTSTKP-FGRLWWDEIVP 641

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T +T  +P  +V    HP+QDR+LT+RE AR QG PD Y+  G I+ ++ Q+GNAV   +
Sbjct: 642  TVVTRAEPHNQV--ILHPEQDRVLTIRENARLQGLPDYYKLTGPIKERYMQVGNAVAVPV 699

Query: 1541 AFALGRKLKEAVE 1553
            A ALG  L  A+E
Sbjct: 700  ARALGYSLALAME 712


>gi|14583094|gb|AAK69757.1|AF383171_1 chromomethylase CMT2 [Arabidopsis thaliana]
          Length = 1244

 Score =  223 bits (567), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 194/372 (52%), Gaps = 38/372 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V  I GGPPCQG SG NR     S  +  + + I+ F+   +Y +P Y L+ENV
Sbjct: 849  LPLPGRVGVICGGPPCQGISGYNRHRNVDSPLNDERNQQIIVFMDIVEYLKPSYVLMENV 908

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  +KG   R  L+ L+ M YQ R GI+ AG +G+SQ R R F+W A P+  LP +P
Sbjct: 909  VDILRMDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQFRSRVFMWGAVPNKNLPPFP 968

Query: 1329 EPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTI 1384
             P H V     L +    N     V + A G P    +A+ ++D I DLP V N   +  
Sbjct: 969  LPTHDVIVRYGLPLEFERN-----VVAYAEGQPRKLEKALVLKDAISDLPHVSNDEDREK 1023

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLT---------------DHISKEMNELNLIRCQKIPKRP 1429
            + Y++ P + FQ+ IR     LT               DH    +NE +  R  +IP R 
Sbjct: 1024 LPYESLPKTDFQRYIRSTKRDLTGSAIDNCNKRTMLLHDHRPFHINEDDYARVCQIPNRK 1083

Query: 1430 GADWHDLPDEKVKLST-GQVVDLIPWCLPNTAK---------RHNQWKGLFGRLDWEGNF 1479
            GA++ DLP   V+ +T  +   + P  LP+            +  + K  F RL W+   
Sbjct: 1084 GANFRDLPGIIVRNNTVCRDPSMEPVILPSGKPLVPGYVFTFQQGKSKRPFARLWWDETV 1143

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT +T P    +     HP+QDR+LT+RE AR QGFPD +QF G+I+ ++ QIGNAV  +
Sbjct: 1144 PTVLTVPTCHSQA--LLHPEQDRVLTIRESARLQGFPDYFQFCGTIKERYCQIGNAVAVS 1201

Query: 1540 LAFALGRKLKEA 1551
            ++ ALG  L  A
Sbjct: 1202 VSRALGYSLGMA 1213



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 5/51 (9%)

Query: 1121 LATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            L  LD+++GCGG+S GL    + SG+   TKWA++    A ++ KLNHP +
Sbjct: 676  LPVLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNT 726


>gi|290999391|ref|XP_002682263.1| cytosine-5 DNA methyltransferase [Naegleria gruberi]
 gi|284095890|gb|EFC49519.1| cytosine-5 DNA methyltransferase [Naegleria gruberi]
          Length = 1527

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 192/688 (27%), Positives = 301/688 (43%), Gaps = 135/688 (19%)

Query: 936  EYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQV 995
            EY + D++Y+   +   +                PY +C +       + +R      Q+
Sbjct: 730  EYNIGDFIYLKTPYLNHEM---------------PYYICMVDSFFENWKGQR------QM 768

Query: 996  KVRRFFRPDDISA------EKAYCSDIREVYYSEETHLIFVEAIAGKCEV---RKKNDIP 1046
            +VR   R  DI            C D +E+Y ++E    F++ I G+C V   RK  D  
Sbjct: 769  RVRWLRRYQDIKILTTGEYHNVLCYDHQELYLTDEYDDNFIKNIKGRCAVFFVRKTEDFE 828

Query: 1047 ACNAPAIFQHIFFCEH--LHDPSKGSLKQL-PAHIKLRYSSGSLDSEAASRRKKGKCIEG 1103
                    + IF+C+   +    + SL +L P  I+L +                KC+E 
Sbjct: 829  KIEGSRDKKDIFYCKSKIVIVGEQISLLELSPQEIELTF----------------KCME- 871

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGE------ 1157
             + L   K     +E  +  LDIF+GCGGLS GL+++GI   K++IE+ +PA +      
Sbjct: 872  -NNLNAIKDQFIPKEK-ITALDIFSGCGGLSLGLERAGI-HVKYSIEFWKPAADTHHYYF 928

Query: 1158 ----AFKLNHPESLMLINNCNVI-----------------------------------LR 1178
                 F  N  E L  I   N +                                   L 
Sbjct: 929  KDCHTFCKNAEEFLKHIKVANELKKRFGLLDKKCQIKGSPGKRRVIHIKNAKRKKDGSLW 988

Query: 1179 AVMEKCG-----DAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
             ++EK G     D E     S  AE+   L     N +P P ++D I GGPPCQGFS +N
Sbjct: 989  LMVEKQGQDLWMDVEKM--DSYRAEIVHFLSTKYAN-IPAPDEIDLIAGGPPCQGFSLLN 1045

Query: 1234 RFNQSTWSKV----QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            RF ++  SK     +  ++L FL +  YF+P+Y L+ENV   ++          +  L  
Sbjct: 1046 RFKETDSSKFLSHDKNRLVLVFLDYVKYFKPKYVLIENVTGILNTTVFDVPSAIIEKLDA 1105

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL--PEWPEPMHVFAAPELKIMLSDNY 1347
             GY+ +F  + A  FG+ Q+R R   + A   + L  P++P+  H  A+ ++  +L +  
Sbjct: 1106 RGYEAKFSTVNAQHFGLPQTRTRVIFFGARKDENLKVPDFPKNTH--ASHKVSAVLDNAS 1163

Query: 1348 QYSAVRSTAN--GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAV 1405
            Q   V +       P   +++RD I DL    + +S++  EY   P + +QK  R +   
Sbjct: 1164 QVKLVANVRKIVAGPLPPVSLRDVISDLIPFED-SSESTAEYL-PPKTVYQKLYRKDSDT 1221

Query: 1406 LTDHISKEMNELN--LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
              DHIS+   E+   LI+C  +P+ PG ++ DL +              P          
Sbjct: 1222 CIDHISQSYGEVTSALIKC--LPRYPGCNFRDLAESAR-----------PLLKEGYLTYR 1268

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
            +  K +  RL W  + PT +T   P        HP+Q R+++VRE AR QGFPD + F G
Sbjct: 1269 DFSKNILARLQWSKSCPTLVTHLNPYSM--KVIHPNQHRVISVREAARCQGFPDDFIFTG 1326

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            SI  K++QIGNAVP  +A ALG ++ +A
Sbjct: 1327 SIHDKYKQIGNAVPVNMAKALGGEIIKA 1354


>gi|222624499|gb|EEE58631.1| hypothetical protein OsJ_09996 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 194/377 (51%), Gaps = 48/377 (12%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG VD I GGPPCQG SG NRF +        + + ++ F+    Y +P+Y L+E
Sbjct: 619  NILPLPGAVDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRPKYVLME 678

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  ++ L+ M YQ R G++ AG +G+ Q R RAF+W A P   LP+
Sbjct: 679  NVVDILKFADGFLGRYAMSCLVAMNYQARLGMMAAGYYGLPQFRMRAFLWGALPSMVLPK 738

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAV--RSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +P P H      ++ ++   +  S V           +A+ + D I DLP VGN   K +
Sbjct: 739  FPLPTHDAV---VRGIVPTTFSQSVVAYNEVDTRCLRKALLLADAISDLPKVGNDQPKDV 795

Query: 1385 MEYQNDPVSWFQKRIRGNM----------------AVLTDHISKEMNELNLIRCQKIPKR 1428
            +EY   P + FQ+ IR N                   L DH   ++N+ +  R Q+IP +
Sbjct: 796  IEYSVAPKTEFQRYIRNNRKDIQDYSFRGDDPSEEGKLFDHQPLKLNKDDYERVQRIPVK 855

Query: 1429 PGADWHDL------PDEKV---------KLSTGQVVDLIPWCLPNTAKRHNQWKGL--FG 1471
             GA++ DL      PD  V         +LS+G+ +      +P+ A    + K    FG
Sbjct: 856  KGANFRDLKGVIVGPDNTVRLDPNISRERLSSGKPL------VPDYAISFVKGKSTKPFG 909

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+   PT +T  +P  ++    HP QDR+LT+RE AR QGFPD Y+  G ++ K+ Q
Sbjct: 910  RLWWDETVPTVVTRAEPHNQI--ILHPSQDRVLTIRENARLQGFPDYYRLIGPLKEKYIQ 967

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GNAV   +A ALG  L
Sbjct: 968  VGNAVAIPVARALGYAL 984


>gi|347952210|gb|AEP33250.1| CMT-type DNA-methyltransferase [Posidonia oceanica]
          Length = 802

 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 198/377 (52%), Gaps = 46/377 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQS--TWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF  S       +   ++ ++   D+ +P+Y L+ENV
Sbjct: 386  LPLPGDVDAVCGGPPCQGISGFNRFRNSDNPLDDEKNRQMVTYMDIVDHLKPKYVLMENV 445

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  L+ L+   YQ R GI+ AG +G+ Q R RAF W + P+  LP++P
Sbjct: 446  VDILKFSKGFLGRYALSFLVSRNYQARLGIMAAGCYGLPQFRLRAFFWGSDPYKMLPQFP 505

Query: 1329 EPMH--VF--AAP---ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H  VF   AP   E  ++  D  Q   +         +A+ + D + DLP+V    +
Sbjct: 506  LPTHDVVFKCGAPTEFERNVVAYDENQPRVLE--------KALVIEDALSDLPSVTLLET 557

Query: 1382 KTIMEYQNDPVSWFQKRIRGN----------------MAVLTDHISKEMNELNLIRCQKI 1425
            +  + Y   P + FQ+ IR +                 +VL DH S ++++ N  R  +I
Sbjct: 558  RDQLSYGKAPQTEFQRYIRASKSEIMCSKDYDAKKSRTSVLYDHCSLQLSKENYSRICQI 617

Query: 1426 PKRPGADWHD------LPDEKVKLSTGQVVDLIPW---CLPNTAKRHNQWKGL--FGRLD 1474
            P+R GA + D      LPD   +    + ++L+P     +PN    +   K L  FGRL 
Sbjct: 618  PRRKGACFRDLPGVIVLPDNSTQRDPSKEMELLPSGKPLVPNFCFTYENGKSLRPFGRLW 677

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+   PT +T   P  +     HP+QDR+LTVRE AR QGFPD Y+F G+I+ ++ QIGN
Sbjct: 678  WDETVPTVLTTAGPHFQA--ILHPEQDRVLTVRENARLQGFPDFYRFSGTIKERYCQIGN 735

Query: 1535 AVPPTLAFALGRKLKEA 1551
            AV   ++ ALG  +  A
Sbjct: 736  AVAIPVSRALGYAMGVA 752


>gi|242217704|ref|XP_002474649.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726179|gb|EED80137.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1157

 Score =  220 bits (561), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 216/825 (26%), Positives = 328/825 (39%), Gaps = 160/825 (19%)

Query: 800  HGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANA 859
            H   ++  S T+LG   +  E+FL N C      +I    +V    V WG      ++  
Sbjct: 408  HCQWLEHSSMTMLGVIGDPEELFLCNSC---SADNIHIQAIVGKAPVHWG------VSPM 458

Query: 860  DKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGS------CHACGTK 913
            D VD            P ++ C+ +Y  E  A FI   D  G    S      C  C   
Sbjct: 459  DLVD------------PDDFCCRFVY-NELDASFISVDDVYGFAAESSALPQNCPVCLLS 505

Query: 914  ESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVV 973
            ++  +++  +   K    Y  A Y VHD+  ++                G + G  P +V
Sbjct: 506  QAHADEDDCR-SVKDGIAYHGATYHVHDFALLA---------------NGSHEG--PAIV 547

Query: 974  CQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCS-----DIREVYYSEETHLI 1028
             Q+L+I            S  + VR   R   IS   + C      D + ++ ++E   I
Sbjct: 548  VQILDI------GSGSRGSEVLTVRLLGR---ISGIISICPNNMIKDEQHLFLTDEEKTI 598

Query: 1029 FVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLD 1088
              E +   C V   + +P                L D     L   P H  ++Y    ++
Sbjct: 599  HPEQLIRHCSVLHPDAVPV--------------ELSD----WLSSSPYHFYIKYHFPVMN 640

Query: 1089 S---------EAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQ 1139
                      +A        C E      +  +        L   D F G G    GL++
Sbjct: 641  PIKWHTHTVVQARDILVCSSCYEDNKAKVLSMKNFLQSNPPLKAFDPFGGVGAFGLGLEE 700

Query: 1140 SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC-NVILRAVMEKCGDAEDCVSTSEAAE 1198
            SG       IE    A +A + N P + M+ N C NV+L+  ++     +  V       
Sbjct: 701  SGCLKVVQTIEISPSAAQALQENCPHT-MVYNQCSNVVLQYAIKNHAGHKPQVPR----- 754

Query: 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF 1258
             A    +  + + P PGQ+D I  G PCQ  S +N F ++   K    +IL  LS+ ++ 
Sbjct: 755  -AIGNGQRALPDPPTPGQIDCIIAGFPCQPHSQLNMFQRADDRK--SHLILNLLSWVNFL 811

Query: 1259 QPRYFLLENVRNFVSFNKGQT---------------FRLTLASLLEMGYQVRFGILEAGA 1303
            QPR+ L ENVR F+S+N   T                +  + SLL M YQVRF +L+A  
Sbjct: 812  QPRFCLFENVRGFLSYNLNATQAGRYRVEGGIKMGGLKFLVHSLLAMNYQVRFALLQAAH 871

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRSTANGAPFR 1362
            +G  QSR R F+ AA     LP +P+P H F   + LK+  ++      + +     P  
Sbjct: 872  YGTPQSRIRFFLIAARSGHPLPAFPQPTHDFPLKDSLKLEFTNKGIARPIWTQNGTVPHN 931

Query: 1363 AMTVRDTIGDLP-----------------------AVGNGASKT-------IMEYQNDPV 1392
             ++V D I DLP                        V   AS++       +  Y   P 
Sbjct: 932  YVSVDDAISDLPRFHWSNPRKLFKNHPQQDNDGIPEVACDASRSYCRPPGALDSYHTPPK 991

Query: 1393 SWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLI 1452
            + FQ + R          ++   E  + R   IP +P AD+  L             D+ 
Sbjct: 992  TSFQVKCRQRKPTDLQQFTRVFKEETVERVVNIPLQPKADYKSLHP-----------DMW 1040

Query: 1453 PWCLPNTAK---RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             W   N A    R     GL+GR+D    F T++T  +P  K     +P   R++TVRE 
Sbjct: 1041 EWLFANPASATARDGFHSGLYGRIDASRWFQTTVTKVEPTAKQSWVLNPYCKRMVTVREL 1100

Query: 1510 ARSQGFPDSYQFHG---SIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            ARSQGFPD ++F+     ++  HRQIGNAVP  ++ ALGR+L+EA
Sbjct: 1101 ARSQGFPDHFRFYSYNDDVKTMHRQIGNAVPFPVSSALGRELREA 1145


>gi|27529842|dbj|BAC53936.1| chromomethylase-like protein [Nicotiana tabacum]
          Length = 741

 Score =  219 bits (558), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 196/367 (53%), Gaps = 33/367 (8%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V  I GGPPCQG SG NRF  ST      + + +  F+   ++  PR+ L+ENV
Sbjct: 355  LPLPGEVQVICGGPPCQGVSGFNRFRNSTNPLGDSKNKQLETFMDIVEFLNPRFVLMENV 414

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQ R G++ AGA+G+ Q R+RA +W A P +TLP++P
Sbjct: 415  VDLVKFADGFLGRYALGRLVGMNYQARMGMMVAGAYGLPQFRRRASMWGALPSETLPQYP 474

Query: 1329 EPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
             P H V    E+       +   A          R + ++D I  LP V +      M Y
Sbjct: 475  LPTHNVVVRGEMPKAFE--FNVVAYDEALTVELKRELFLKDAISALPPVEHDEPTDEMPY 532

Query: 1388 QNDPVSWFQKRIR----GNM-AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD---- 1438
             ++P S FQ  IR    G + +VL DH    +NE +  R  +IPKR GA++ DLP     
Sbjct: 533  IDEPKSAFQHFIRSRRNGTLGSVLYDHRPLRLNEDDYQRVCQIPKRKGANFRDLPGVRVR 592

Query: 1439 -----------EKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDP 1486
                       E+VK+++G+   L+P + +  T  R    K  FGRL W+   PT +T  
Sbjct: 593  ANNTVELDPDVERVKVASGK--PLVPDYAI--TFVRGTSTKP-FGRLWWDEIVPTVVTRA 647

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGR 1546
            +P  +V    HP+QDR+LT+RE AR QGFPD Y+  G I+ ++ Q+GNAV   +A  LG 
Sbjct: 648  EPHNQV--ILHPEQDRVLTIRENARLQGFPDYYKLTGPIKERYMQVGNAVAVPVARVLGY 705

Query: 1547 KLKEAVE 1553
             L  A+E
Sbjct: 706  SLALALE 712


>gi|218192371|gb|EEC74798.1| hypothetical protein OsI_10599 [Oryza sativa Indica Group]
          Length = 1760

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 194/377 (51%), Gaps = 48/377 (12%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG VD I GGPPCQG SG NRF +        + + ++ F+    Y +P+Y L+E
Sbjct: 619  NILPLPGAVDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRPKYVLME 678

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  ++ L+ M YQ R G++ AG +G+ Q R RAF+W A P   LP+
Sbjct: 679  NVVDILKFADGFLGRYAMSCLVAMNYQARLGMMAAGYYGLPQFRMRAFLWGALPSMVLPK 738

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAV--RSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +P P H      ++ ++   +  S V           +A+ + D I DLP VGN   K +
Sbjct: 739  FPLPTHDAV---VRGIVPTTFSQSVVAYNEVDTRCLRKALLLADAISDLPKVGNDQPKDV 795

Query: 1385 MEYQNDPVSWFQKRIRGNM----------------AVLTDHISKEMNELNLIRCQKIPKR 1428
            +EY   P + FQ+ IR N                   L DH   ++N+ +  R Q+IP +
Sbjct: 796  IEYSVAPKTEFQRYIRNNRKDIQDYSFRGDDPSEEGKLFDHQPLKLNKDDYERVQRIPVK 855

Query: 1429 PGADWHDL------PDEKV---------KLSTGQVVDLIPWCLPNTAKRHNQWKGL--FG 1471
             GA++ DL      PD  V         +LS+G+ +      +P+ A    + K    FG
Sbjct: 856  KGANFRDLKGVIVGPDNTVRLDPNISRERLSSGKPL------VPDYAISFVKGKSTKPFG 909

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+   PT +T  +P  ++    HP QDR+LT+RE AR QGFPD Y+  G ++ K+ Q
Sbjct: 910  RLWWDETVPTVVTRAEPHNQI--ILHPSQDRVLTIRENARLQGFPDYYRLIGPLKEKYIQ 967

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GNAV   +A ALG  L
Sbjct: 968  VGNAVAIPVARALGYAL 984


>gi|24421681|gb|AAN60988.1| Putative DNA cytosine methyltransferase MET2a [Oryza sativa Japonica
            Group]
 gi|108706955|gb|ABF94750.1| C-5 cytosine-specific DNA methylase family protein, expressed [Oryza
            sativa Japonica Group]
          Length = 1761

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 194/377 (51%), Gaps = 48/377 (12%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG VD I GGPPCQG SG NRF +        + + ++ F+    Y +P+Y L+E
Sbjct: 619  NILPLPGAVDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRPKYVLME 678

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  ++ L+ M YQ R G++ AG +G+ Q R RAF+W A P   LP+
Sbjct: 679  NVVDILKFADGFLGRYAMSCLVAMNYQARLGMMAAGYYGLPQFRMRAFLWGALPSMVLPK 738

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAV--RSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
            +P P H      ++ ++   +  S V           +A+ + D I DLP VGN   K +
Sbjct: 739  FPLPTHDAV---VRGIVPTTFSQSVVAYNEVDTRCLRKALLLADAISDLPKVGNDQPKDV 795

Query: 1385 MEYQNDPVSWFQKRIRGNM----------------AVLTDHISKEMNELNLIRCQKIPKR 1428
            +EY   P + FQ+ IR N                   L DH   ++N+ +  R Q+IP +
Sbjct: 796  IEYSVAPKTEFQRYIRNNRKDIQDYSFRGDDPSEEGKLFDHQPLKLNKDDYERVQRIPVK 855

Query: 1429 PGADWHDL------PDEKV---------KLSTGQVVDLIPWCLPNTAKRHNQWKGL--FG 1471
             GA++ DL      PD  V         +LS+G+ +      +P+ A    + K    FG
Sbjct: 856  KGANFRDLKGVIVGPDNTVRLDPNISRERLSSGKPL------VPDYAISFVKGKSTKPFG 909

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+   PT +T  +P  ++    HP QDR+LT+RE AR QGFPD Y+  G ++ K+ Q
Sbjct: 910  RLWWDETVPTVVTRAEPHNQI--ILHPSQDRVLTIRENARLQGFPDYYRLIGPLKEKYIQ 967

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GNAV   +A ALG  L
Sbjct: 968  VGNAVAIPVARALGYAL 984



 Score = 47.0 bits (110), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 1000 FFRPDD--ISAEKAYCSDIRE----VYYSEETHLIFVEAIAGKCEVRK--KNDIPACNAP 1051
            FFR  D  IS++     D R     V+ S+E +   +E I  K ++     N  P   A 
Sbjct: 327  FFRTADTVISSKLLKVHDHRHNHKRVFLSKEKNDNLIECIVSKVKIAHVDPNMTPQARAH 386

Query: 1052 AIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGED----EL 1107
            AI     + +  +  +  +   LPA      + G+L SEA S      C + ++    +L
Sbjct: 387  AISDCDLYYDMSYSVAYSTFANLPAD-----NDGALGSEATSNIS---CDDADNSSKGKL 438

Query: 1108 EVEKQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKL 1161
              +     S++   A+L D+++GCG +S GL      SGI+  T+WA++  + A    K 
Sbjct: 439  SADIVAPYSEQTETASLLDLYSGCGAMSTGLCLGFAFSGINLETRWAVDINKYACACLKH 498

Query: 1162 NHPES 1166
            NHP S
Sbjct: 499  NHPYS 503


>gi|359478779|ref|XP_002283355.2| PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like [Vitis
            vinifera]
          Length = 956

 Score =  218 bits (556), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 193/370 (52%), Gaps = 29/370 (7%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   ++     + + ++ F+   +Y +PR+ L+ENV
Sbjct: 567  LPLPGDVDVICGGPPCQGISGFNRFRNKENPLEDPKNKQLVVFMDVVNYLKPRFVLMENV 626

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQ R G++ AGA+G+ Q R R F+W A   + LP++P
Sbjct: 627  VDIVKFAGGYLGRYALGRLIGMNYQTRMGMMAAGAYGLPQFRMRVFMWGARFEEVLPQYP 686

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVR----DTIGDLPAVGNGASKTI 1384
             P H      ++ ++   ++ + V +   G  F  +  +    D I DLP V N  ++  
Sbjct: 687  LPTHDVI---IRGVIPLEFEMNTV-AYDEGHKFDELETKLLLADAISDLPPVTNDEARDE 742

Query: 1385 MEYQNDPVSWFQK--RIRGN----MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP- 1437
            M Y   P + FQ+  R+R N     ++L DH   E+N  +  R  +IPK  GA++ DLP 
Sbjct: 743  MPYGKAPQTEFQRFIRLRKNGLQTNSLLYDHRPLELNADDYQRVCQIPKTKGANFRDLPG 802

Query: 1438 -----DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-----LFGRLDWEGNFPTSITDPQ 1487
                 D KV+         +P   P        + G      FGRL W+   PT +T  +
Sbjct: 803  VLVGADNKVEWDPNVERIYLPSGKPLVPDYAMSFVGGSSSKPFGRLWWDETVPTVVTRAE 862

Query: 1488 PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            P  +V    HP+QDR+L++RE AR QGFPD YQ  G ++ ++ Q+GNAV   +A ALG  
Sbjct: 863  PHNQV--ILHPEQDRVLSIRENARLQGFPDYYQLRGPVKERYIQVGNAVAVPVARALGYA 920

Query: 1548 LKEAVESKRS 1557
            L  A +   S
Sbjct: 921  LGLAAQGSVS 930



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 18/214 (8%)

Query: 961  KAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRP-DDISAEKAYCSDIREV 1019
            KAG N     + +C+++E+ V      A   +     + F+R  D +  + A   D + V
Sbjct: 234  KAGDNAD---HYICKIVELFV------ALDGTPYFTAQWFYRARDTVIKDHANLIDNKRV 284

Query: 1020 YYSEETHLIFVEAIAGKCEVRK--KNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAH 1077
            ++SE      ++ +  K  + +   N        AI    ++ + L+     S  +LP  
Sbjct: 285  FFSEMRDDNPLDCLVQKLNIARVPHNLDLEARKLAISSCDYYYDMLYLLDYSSFIKLPPE 344

Query: 1078 IKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL 1137
               R +S +L + ++     G   E + + E   Q      + +  LD+++GCG +S GL
Sbjct: 345  -NSRVNSEALSTISSEANMDGSTCELKSDSEEVSQARERSLSEMTLLDLYSGCGAMSSGL 403

Query: 1138 ----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
                + SG++  T+WAI+    A E+ +LNHPE+
Sbjct: 404  CLGAKMSGVNLVTRWAIDINAYACESVRLNHPET 437


>gi|224057130|ref|XP_002299134.1| DNA methyltransferase [Populus trichocarpa]
 gi|222846392|gb|EEE83939.1| DNA methyltransferase [Populus trichocarpa]
          Length = 973

 Score =  218 bits (556), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 38/372 (10%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG V+ I GGPPCQG SG NRF   ++     + + ++ F+   D+ +P++ L+E
Sbjct: 583  NILPLPGDVEVICGGPPCQGISGFNRFRNVKNPLEDPKNKQLVVFMDIVDFLKPKFVLME 642

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  +  L+ M YQ R G+L AGA+G+ Q R R F+W A   + LP+
Sbjct: 643  NVVDLLKFADGFLGRYAMGCLVSMKYQARLGMLAAGAYGLPQFRMRVFLWGACATEKLPQ 702

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF--RAMTVRDTIGDLPAVGNGASKTI 1384
            +P P H      ++ ++   ++ + V       P   R + + D I DLPAV N   +  
Sbjct: 703  YPLPTHDVL---VRGVVPLEFEGNTVAYEEGVKPQLERKLFLEDAISDLPAVANDEKRDE 759

Query: 1385 MEYQNDPVSWFQKRIRGNMA------VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
            M Y   P + FQ+ IR          +L DH   E+N+ +  R  +IPKR G ++ DLP 
Sbjct: 760  MPYGESPKTEFQRMIRLKKMGLELNDLLFDHRPLELNDDDYQRVCQIPKRKGGNFRDLPG 819

Query: 1439 EKVK---------------LSTGQVVDLIPWCLPNTAKR--HNQWKGLFGRLDWEGNFPT 1481
             +V+               LS+G+ +      +P+ A    +      F RL W+   PT
Sbjct: 820  VRVRPDKKVEWDPEVPRQYLSSGKPL------VPDYAMTFVNGSSSKPFARLWWDETVPT 873

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             +T  +P  +  M  HP+QDR+LT+RE AR QGFPD YQ  G I+ ++ Q+GNAV   +A
Sbjct: 874  VVTRAEPHNQAIM--HPEQDRVLTIRENARLQGFPDYYQLCGPIKERYIQVGNAVAVPVA 931

Query: 1542 FALGRKLKEAVE 1553
             ALG  L  A +
Sbjct: 932  RALGYALGRAFQ 943



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 18/201 (8%)

Query: 973  VCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEA 1032
            +C+++E+        +E ++     + ++R  D   +  Y SD + V++SE  +   ++ 
Sbjct: 261  ICRIIEMF------ESEDRTPHFTAQWYYRSTDTIIKDKYISDPKCVFFSEIRNDNPLDC 314

Query: 1033 IAGKCE-VRKKNDIPACNAPA-IFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSE 1090
            +  K + VR    + +    A      F+C+ L+     +  +LP+      ++    S 
Sbjct: 315  LTRKLKIVRLALGVDSETRRAKTLNCDFYCDMLYLLPYSTFVKLPSE---NNTTAPESSS 371

Query: 1091 AASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-ST 1145
              S       ++ E +   E  G   +++ +A LD+++GCG +S GL      SG++  T
Sbjct: 372  TISSDIDAAGVKFECDEVCESSG--RRKSEVALLDLYSGCGAMSTGLCLGANLSGLNLVT 429

Query: 1146 KWAIEYEEPAGEAFKLNHPES 1166
            KWA++  + A E+ +LNHPE+
Sbjct: 430  KWAVDLNKHACESLRLNHPET 450


>gi|443920769|gb|ELU40612.1| C5-DNA-methyltransferase [Rhizoctonia solani AG-1 IA]
          Length = 1230

 Score =  218 bits (555), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 236/521 (45%), Gaps = 100/521 (19%)

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            G S+   +  LD+F+G GGLS+GL  SG+   K+AI+++  A E +K N P    +  + 
Sbjct: 722  GNSRVTRMRMLDMFSGAGGLSQGLVLSGVCEPKYAIDHDAAALETYKQNFPGVSAIHQDV 781

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ--VDFINGGPPCQGFSG 1231
            NV L         ++  V++    + A +  ++   +  LPG+  VDFI  GPPCQ FSG
Sbjct: 782  NVAL---------SDTLVASVAGHDRAPTPSDSDSEDSTLPGRYDVDFICAGPPCQSFSG 832

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS------------------ 1273
             NRF + T    +  MI+A ++  D+++P+YFL+ENV N ++                  
Sbjct: 833  ANRFRKDT--DPRTTMIIAVMAAVDHYRPKYFLVENVPNALTNRILGPSARGRSSDSAET 890

Query: 1274 ------FNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
                  + +    R    + L++GY +R GIL+A   G  Q R+RAFI  A    TLP +
Sbjct: 891  DFHEDNYVEQGILRFITRAALDLGYAIRVGILQASEHGAPQHRRRAFIMGARHGHTLPNF 950

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF------RAMTVRDTIGDLP------- 1374
            P P +    PE  + L  +             P       R +T+ D I DL        
Sbjct: 951  PLPSYCVPKPETGLRLPSSRYGDPTHQKDGNVPIVGNGIHRRVTMWDAISDLAPFEWVNP 1010

Query: 1375 ------------------------------------AVGNGASKTIMEYQNDPVSWFQKR 1398
                                                AVG GA   +    + P + +Q+ 
Sbjct: 1011 YFAIPETEASRAEDRRRRTRGETRIPVYVAVKDDRQAVGIGAGGPVPYRGDSPFTSYQQE 1070

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
             RG+  ++++H +        +    IP    AD   LP+    L  G  +  +      
Sbjct: 1071 ARGSETMVSEHYTSSFKSPLFVDVVNIPLSAKADHRALPE---VLKRGDFLSNV----FG 1123

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPD-------QDRILTVRECAR 1511
            +      ++G FGR D +  F T +T  +P  K G C HPD       Q R+LT+RE AR
Sbjct: 1124 SGGASGYYQGAFGRYDKKAPFATILTSLRPAKKNGFCIHPDVGGFTLAQKRMLTMRELAR 1183

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            +QGFPD ++FHG+++  +RQIGNAV   ++ A+G ++K+A+
Sbjct: 1184 AQGFPDHFRFHGTVEQVNRQIGNAVVIQVSRAIGLEIKKAI 1224


>gi|241997518|ref|XP_002433408.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
 gi|215490831|gb|EEC00472.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
          Length = 414

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 181/323 (56%), Gaps = 24/323 (7%)

Query: 1126 IFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCG 1185
            +FA   G+S GL+  G+S T WAIE  E A  AF LN P++ + + +CN  L+ V+E  G
Sbjct: 8    VFASSTGISCGLEAVGVSDTLWAIESLEVAARAFSLNFPKATVFVQDCNSFLKEVLE--G 65

Query: 1186 DAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQC 1245
               +                      P  G+VDF+ GGPPCQG+S +NR   +  S+++ 
Sbjct: 66   QETNAKG----------------QRFPKKGEVDFLCGGPPCQGYSLLNRHRGNWNSRLKN 109

Query: 1246 EMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFG 1305
             ++   LS  DY++PR+FL+ENV++F+S  KG   +LTL SLL +GYQ  FG+L+AG++G
Sbjct: 110  SLVSTLLSLCDYYRPRFFLMENVKSFISEEKGLVMQLTLQSLLRLGYQCCFGVLQAGSYG 169

Query: 1306 VSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
            + Q RKR  I AA+P + LP++PEP   F  P    +     ++    +    AP R +T
Sbjct: 170  LPQDRKRLVILAAAPGELLPKFPEPKTSF--PSNNFVTVKGKKFGPTTTWCTSAPLRTVT 227

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN-MAVLTDHISKEMNELNLIRCQK 1424
            +RD I DL ++    S +     ++P+S +Q+ ++G+    + DH+ K +  L   R   
Sbjct: 228  LRDAISDLASLEPSDSASSF---SEPMSCYQRMLKGDSRGPIRDHVPKLLTPLVQARVDH 284

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQ 1447
            IPK P A+W  LP+ K+ L  G+
Sbjct: 285  IPKVPRANWRSLPNIKLLLRNGK 307


>gi|14647157|gb|AAK71870.1| chromomethylase 3 [Arabidopsis thaliana]
          Length = 839

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 196/378 (51%), Gaps = 46/378 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF          + + +L +++  +Y +P++ L+ENV
Sbjct: 445  LPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENV 504

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +   KG   R  +  LL+M YQVR G++ AGA+G++Q R R F+W A P + +P++P
Sbjct: 505  VDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEIIPQFP 564

Query: 1329 EPMH--VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
             P H  V     +K    +   Y    +         + ++D I DLPAV N   +  + 
Sbjct: 565  LPTHDLVHRGNIVKEFQGNIVAYDEGHTVKLA---DKLLLKDVISDLPAVANSEKRDEIT 621

Query: 1387 YQNDPVSWFQK--RIRGNMA------------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            Y  DP + FQK  R+R + A            VL DH    +N  +  R  ++PKR GA+
Sbjct: 622  YDKDPTTPFQKFIRLRKDEASGSQSKSKSKKHVLYDHHPLNLNINDYERVCQVPKRKGAN 681

Query: 1433 WHDLP---------------DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGRLDW 1475
            + D P                E+VKL +G+ +      +P+ A  +   K    FGRL W
Sbjct: 682  FRDFPGVIVGPGNVVKLEEGKERVKLESGKTL------VPDYALTYVDGKSCKPFGRLWW 735

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +T  +P  +V    HP+Q+R+L++RE AR QGFPD Y+  G  + K+ Q+GNA
Sbjct: 736  DEIVPTVVTRAEPHNQV--IIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKYIQVGNA 793

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            V   +A ALG  L  A +
Sbjct: 794  VAVPVAKALGYALGTAFQ 811



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 12/177 (6%)

Query: 998  RRFFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR--KKNDIPACNAPAIF 1054
            R F+RP D +  E     + + V++SE      +  +  K  +     N+      PA  
Sbjct: 147  RWFYRPSDTVMKEFEILINKKRVFFSEIQDTNELGLLEKKLNILMIPLNENTKETIPATE 206

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
               FFC+  +     + + +     +  S  S  S     R+    I    E   E +G 
Sbjct: 207  NCDFFCDMNYFLPYDTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQETEG- 265

Query: 1115 ASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
               +     LD+++GCG +S GL    Q SG++  TKWA++    A ++ + NHPE+
Sbjct: 266  ---QKEATLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET 319


>gi|356497585|ref|XP_003517640.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like [Glycine max]
          Length = 868

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 190/374 (50%), Gaps = 35/374 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   +S     + + ++ F+    Y +P++ L+ENV
Sbjct: 476  LPLPGDVDVICGGPPCQGISGFNRFRNKESPLDDEKNKQLVVFMDIVQYLKPKFTLMENV 535

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F +G   R  L  LL+M YQ R GI+ AGA+G+ Q R R F+W A+P   LP++P
Sbjct: 536  VDLVKFAEGFLGRYALGRLLQMNYQARLGIMAAGAYGLPQFRLRVFLWGAAPSQKLPQFP 595

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
             P H      + I L       A          + + + D I DLP V N   +  ++Y 
Sbjct: 596  LPTHDVIVRGV-IPLEFEINTVAYNEGQKVQLQKKLLLEDAISDLPRVQNNERRDEIKYD 654

Query: 1389 NDPVSWFQKRIR----GNM---AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD--- 1438
                + FQ+ IR    GN    ++L DH   E+N  +  R  +IPK+ G  + DLP    
Sbjct: 655  KAAQTEFQRFIRLSKHGNTSLNSLLYDHRPLELNADDYQRVCRIPKKKGGCFRDLPGVRV 714

Query: 1439 ------------EKVKLSTGQ--VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                        E+V L +G+  V D     +  T+ +       F RL W+   PT +T
Sbjct: 715  GADNKVEWDPDVERVYLDSGKPLVPDYAMTFVNGTSSKP------FARLWWDETVPTVVT 768

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
              +P  +     HP+QDR+LT+RE AR QGFPD Y+  G ++ ++ Q+GNAV   +A AL
Sbjct: 769  RAEPHNQA--ILHPEQDRVLTIRENARLQGFPDFYKLCGPVKERYIQVGNAVAVPVARAL 826

Query: 1545 GRKLKEAVESKRST 1558
            G  L  A E   ST
Sbjct: 827  GYTLGLAFEGSTST 840



 Score = 47.0 bits (110), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 1116 SQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            S++  +  LD++ GCG +S GL      SG++  T+WA++  + A E  KLNHPE+
Sbjct: 290  SKDPEMKLLDLYCGCGAMSTGLCLGGNLSGVNLVTRWAVDLNQHACECLKLNHPET 345


>gi|336377037|gb|EGO05372.1| hypothetical protein SERLA73DRAFT_68986 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390079|gb|EGO31222.1| hypothetical protein SERLADRAFT_432870 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1211

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 227/922 (24%), Positives = 375/922 (40%), Gaps = 171/922 (18%)

Query: 713  EKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLV 772
            E+   EER +      ++K RS      W   CV+  G+      +V   VV++G     
Sbjct: 370  ERAAVEERPVHIQPEQRLKPRSR-----WL-RCVQIGGVNYSLGDVV---VVAIGQYENK 420

Query: 773  EVDEL----DQLPVIYFVEYMFEAT-----GGCKLFHGIIMQRGSHTVLGNTANEREVFL 823
            +  EL    D  P  +  ++ + A      G  +  H +  +  + TVL   ++ +E+FL
Sbjct: 421  KAPELPHPKDIPPKAHLADFFWFAKIIYLDGEHETMHVLWFEHSTKTVLQEISDPQELFL 480

Query: 824  ANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKS 883
             + C  L    I   V V                  D + +    +      P ++YC+ 
Sbjct: 481  TDICNSLAFSLIVGKVTVHF---------------PDPLTKLPTFK------PQDFYCRL 519

Query: 884  LYWPERGAFFILPVDSMGLGVGS-----CHACGTKESEKEKETFKVHSKTSFVYGTAEYF 938
            +Y  +  +F  +      L V S     C  C   E  +++E +         +    Y 
Sbjct: 520  VYDCKTASFTDINARQASLAVNSAPPDNCPGCLLVE-HRDQELYGKKITNGVAWHGVSYH 578

Query: 939  VHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVR 998
            ++D+V I          EG            P  V  L  I  P   + ++  S  VKV+
Sbjct: 579  INDFVLIK-------AKEG------------PCHVGHLTSISFPTRLRESDEPS--VKVK 617

Query: 999  RFFRPDDISAE-KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHI 1057
             F R D +         D R ++ +++   + +  + G C V   N +P           
Sbjct: 618  LFGRMDKLGLRPHNIIKDERHLFATDDEMEVVLSDLLGLCFVYPHNSLP----------- 666

Query: 1058 FFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGK---------CI-EGEDEL 1107
                   DP +  L   P H  +RY   SLD  + ++R+  +         C+ E  D+ 
Sbjct: 667  -------DP-RAWLLAAPNHFFVRYHFPSLDVRSWNQRRDMEPHELLICKTCVQENLDKH 718

Query: 1108 EVEKQGGA-SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166
               K+  + ++   L   D F G G    GL++SG      A+E    A    K N P++
Sbjct: 719  NTLKEFMSNARRRPLRAFDPFGGSGAFGLGLEESGCIKVTHAVEISPSAARTMKRNCPDT 778

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLP---LPGQVDFINGG 1223
             +     N IL+  ++K              +   ++D N   NLP    PG +D I  G
Sbjct: 779  TVYNQCANKILQWAIKK--------HEGLPVDRLKTIDNN--KNLPPPLRPGDIDCIVAG 828

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN-------- 1275
             PCQ  S +N + ++  + ++  +IL  LS+ D+ QPRY + ENVR F+ +N        
Sbjct: 829  FPCQPHSRLNMYQKA--NDLKSNLILNVLSWIDFLQPRYCIFENVRGFLQYNLKAHQVDE 886

Query: 1276 -------KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
                   +    +  +  ++ MGYQVR G+L+A  +G  Q+R R F+ A+     LPE P
Sbjct: 887  HKVAGGIEMGGLKFVMRVMIAMGYQVRVGLLQAAHYGTPQTRVRFFLVASKHGYPLPELP 946

Query: 1329 EPMHVFAAPE-LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVG------NGAS 1381
            +P H F   + L+I   + +    ++     AP   +++ D I DLP          G S
Sbjct: 947  QPSHDFPLVDSLEIKFPNGHYVRPIKFMNGTAPHSYVSIDDAIHDLPLFDWSNPDRAGRS 1006

Query: 1382 KTIME------------------------YQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
            +   E                        Y+++P + FQ   R          ++    +
Sbjct: 1007 RQDPETRDDIKQVKCDKQKAWCGLRGQAVYRHEPRTAFQLWCRRKPTEDLQQYTRTYLPI 1066

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK-GLFGRLDWE 1476
             + R + IP +  AD+ D+P    +  T           P +A   + ++ GL+GRLD  
Sbjct: 1067 KVKRVRSIPLKAKADYRDMPSALWEWQTAN---------PGSAMARSGFRPGLYGRLDRS 1117

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG---SIQHKHRQIG 1533
              F T++T+  P  K     +P   RI+TVRE ARSQGFPD + F+    ++   HRQIG
Sbjct: 1118 LWFQTTVTNVDPTAKQCRVLNPYCMRIVTVRELARSQGFPDYFTFYADGDNVITMHRQIG 1177

Query: 1534 NAVPPTLAFALGRKLKEAVESK 1555
            NAVP  ++ ALGR+L+ A+  K
Sbjct: 1178 NAVPWPVSLALGRELRSALIKK 1199


>gi|14583092|gb|AAK69756.1|AF383170_1 chromomethylase CMT3 [Arabidopsis thaliana]
          Length = 839

 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 196/378 (51%), Gaps = 46/378 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF          + + +L +++  +Y +P++ L+ENV
Sbjct: 445  LPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENV 504

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +   KG   R  +  LL+M YQVR G++ AGA+G++Q R R F+W A P + +P++P
Sbjct: 505  VDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEIIPQFP 564

Query: 1329 EPMH--VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
             P H  V     +K    +   Y    +         + ++D I DLPAV N   +  + 
Sbjct: 565  LPTHDLVHRGNIVKEFQGNIVAYDEGHTVKLA---DKLLLKDVISDLPAVANSEKRDEIT 621

Query: 1387 YQNDPVSWFQK--RIRGNMA------------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            Y  DP + FQK  R+R + A            VL DH    +N  +  R  ++PKR GA+
Sbjct: 622  YDKDPTTPFQKFIRLRKDEASGSQSKSKSKKHVLYDHHPLNLNINDYERVCQVPKRKGAN 681

Query: 1433 WHDLP---------------DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGRLDW 1475
            + D P                E+VKL +G+ +      +P+ A  +   K    FGRL W
Sbjct: 682  FRDFPGVIVGPGNVVKLEEGKERVKLESGKTL------VPDYALTYVDGKSCKPFGRLWW 735

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +T  +P  +V    HP+Q+R+L++RE AR QGFPD Y+  G  + K+ Q+GNA
Sbjct: 736  DEIVPTVVTRAEPHNQV--IIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKYIQVGNA 793

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            V   +A ALG  L  A +
Sbjct: 794  VAVPVAKALGYALGTAFQ 811



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 998  RRFFRPDDISAEKAYCSDIRE--VYYSEETHLIFVEAIAGKCEVR--KKNDIPACNAPAI 1053
            R F+RP D +  K +   I+E  V++SE      +  +  K  +     N+      PA 
Sbjct: 147  RWFYRPSD-TVMKEFEILIKEKRVFFSEIQDTNELGLLEKKLNILMIPLNENTKETIPAT 205

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
                FFC+  +     + + +     +  S  S  S     R+    I    E   E +G
Sbjct: 206  ENCDFFCDMNYFLPYDTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQETEG 265

Query: 1114 GASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
                      LD+++GCG +S GL    Q SG++  TKWA++    A ++ + NHPE+
Sbjct: 266  ----HKKATLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET 319


>gi|110739012|dbj|BAF01425.1| putative chromomethylase [Arabidopsis thaliana]
          Length = 839

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 196/378 (51%), Gaps = 46/378 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF          + + +L +++  +Y +P++ L+ENV
Sbjct: 445  LPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENV 504

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +   KG   R  +  LL+M YQVR G++ AGA+G++Q R R F+W A P + +P++P
Sbjct: 505  VDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEIIPQFP 564

Query: 1329 EPMH--VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
             P H  V     +K    +   Y    +         + ++D I DLPAV N   +  + 
Sbjct: 565  LPTHDLVHRGNIVKEFQGNIVAYDEGHTVKLA---DKLLLKDVISDLPAVANSEKRDEIT 621

Query: 1387 YQNDPVSWFQK--RIRGNMA------------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            Y  DP + FQK  R+R + A            VL DH    +N  +  R  ++PKR GA+
Sbjct: 622  YDKDPTTPFQKFIRLRKDEASGSQSKSKSKKHVLYDHHPLNLNINDYERVCQVPKRKGAN 681

Query: 1433 WHDLP---------------DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGRLDW 1475
            + D P                E+VKL +G+ +      +P+ A  +   K    FGRL W
Sbjct: 682  FRDFPGVIVGPGNVVKLEEGKERVKLESGKTL------VPDYALTYVDGKSCKPFGRLWW 735

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +T  +P  +V    HP+Q+R+L++RE AR QGFPD Y+  G  + K+ Q+GNA
Sbjct: 736  DEIVPTVVTRAEPHNQV--IIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKYIQVGNA 793

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            V   +A ALG  L  A +
Sbjct: 794  VAVPVAKALGYALGTAFQ 811



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 12/177 (6%)

Query: 998  RRFFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR--KKNDIPACNAPAIF 1054
            R F+RP D +  E       + V++SE      +  +  K  +     N+      PA  
Sbjct: 147  RWFYRPSDTVMKEFEILIKKKRVFFSEIQDTNELGLLEKKLNILMIPLNENTKETIPATE 206

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
               FFC+  +     + + +     +  S  S  S     R+    I    E   E +G 
Sbjct: 207  NCDFFCDMNYFLPYDTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQETEG- 265

Query: 1115 ASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
                     LD+++GCG +S GL    Q SG++  TKWA++    A ++ + NHPE+
Sbjct: 266  ---HKKATLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET 319


>gi|15222449|ref|NP_177135.1| DNA (cytosine-5)-methyltransferase CMT3 [Arabidopsis thaliana]
 gi|110832800|sp|Q94F88.2|CMT3_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase CMT3; AltName:
            Full=Chromomethylase 3; AltName: Full=Protein
            CHROMOMETHYLASE 3
 gi|12325192|gb|AAG52543.1|AC013289_10 putative chromomethylase; 17383-22406 [Arabidopsis thaliana]
 gi|332196852|gb|AEE34973.1| DNA (cytosine-5)-methyltransferase CMT3 [Arabidopsis thaliana]
          Length = 839

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 196/378 (51%), Gaps = 46/378 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF          + + +L +++  +Y +P++ L+ENV
Sbjct: 445  LPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENV 504

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +   KG   R  +  LL+M YQVR G++ AGA+G++Q R R F+W A P + +P++P
Sbjct: 505  VDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEIIPQFP 564

Query: 1329 EPMH--VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
             P H  V     +K    +   Y    +         + ++D I DLPAV N   +  + 
Sbjct: 565  LPTHDLVHRGNIVKEFQGNIVAYDEGHTVKLA---DKLLLKDVISDLPAVANSEKRDEIT 621

Query: 1387 YQNDPVSWFQK--RIRGNMA------------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            Y  DP + FQK  R+R + A            VL DH    +N  +  R  ++PKR GA+
Sbjct: 622  YDKDPTTPFQKFIRLRKDEASGSQSKSKSKKHVLYDHHPLNLNINDYERVCQVPKRKGAN 681

Query: 1433 WHDLP---------------DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGRLDW 1475
            + D P                E+VKL +G+ +      +P+ A  +   K    FGRL W
Sbjct: 682  FRDFPGVIVGPGNVVKLEEGKERVKLESGKTL------VPDYALTYVDGKSCKPFGRLWW 735

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +T  +P  +V    HP+Q+R+L++RE AR QGFPD Y+  G  + K+ Q+GNA
Sbjct: 736  DEIVPTVVTRAEPHNQV--IIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKYIQVGNA 793

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            V   +A ALG  L  A +
Sbjct: 794  VAVPVAKALGYALGTAFQ 811



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 12/177 (6%)

Query: 998  RRFFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR--KKNDIPACNAPAIF 1054
            R F+RP D +  E       + V++SE      +  +  K  +     N+      PA  
Sbjct: 147  RWFYRPSDTVMKEFEILIKKKRVFFSEIQDTNELGLLEKKLNILMIPLNENTKETIPATE 206

Query: 1055 QHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGG 1114
               FFC+  +     + + +     +  S  S  S     R+    I    E   E +G 
Sbjct: 207  NCDFFCDMNYFLPYDTFEAIQQETMMAISESSTISSDTDIREGAAAISEIGECSQETEG- 265

Query: 1115 ASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
                     LD+++GCG +S GL    Q SG++  TKWA++    A ++ + NHPE+
Sbjct: 266  ---HKKATLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET 319


>gi|296212502|ref|XP_002752890.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Callithrix jacchus]
          Length = 298

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 150/257 (58%), Gaps = 43/257 (16%)

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
            ++ D+ ++ +  +  +  PF  +TVRDT+ DL  V NGAS   + Y  +P SWFQ+++ G
Sbjct: 25   LVVDDKKFVSNITRLSSGPFWTITVRDTMSDLLEVQNGASALEISYNGEPQSWFQRQLWG 84

Query: 1402 NM--AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG------------- 1446
                 +L DHI K+M+ L   R Q IP  PG+DW DLP+ +V+LS G             
Sbjct: 85   TQYQPILRDHICKDMSALVAARMQHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHNR 144

Query: 1447 ----------------------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                                        Q   LIPWCLP+T  RHN W GL+GRL+W+G 
Sbjct: 145  KNGRSSSRALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 204

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            F T++T+P+PMGK G   HP+Q R+++VRECA SQGFPD+Y+  G+I  KHRQ+GNAVPP
Sbjct: 205  FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECACSQGFPDTYRLFGNILDKHRQVGNAVPP 264

Query: 1539 TLAFALGRKLKEAVESK 1555
             LA A+G ++K  V +K
Sbjct: 265  PLAKAIGLEIKLCVLAK 281


>gi|255557861|ref|XP_002519960.1| protein with unknown function [Ricinus communis]
 gi|223541006|gb|EEF42564.1| protein with unknown function [Ricinus communis]
          Length = 734

 Score =  216 bits (550), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 192/372 (51%), Gaps = 37/372 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF    +  S  +   I+ F+    + +P++ L+ENV
Sbjct: 335  LPLPGDVDVICGGPPCQGISGYNRFRNVNAPLSDERNRQIVVFMDIVQFLKPKFVLMENV 394

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+K    R  L+ L+ M YQ R G + AG +G+ Q R R F+W A P + LP++P
Sbjct: 395  VDILKFDKASFARYALSRLVHMKYQARLGTIAAGCYGLPQFRLRVFLWGAHPSEKLPQFP 454

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
             P H      ++    + ++ + V +   G P    +A  ++D I DLP V    ++  M
Sbjct: 455  LPTHDVI---VRYWPPNEFERNTV-AYDEGQPRELEKAAVLQDAISDLPPVTTHETREEM 510

Query: 1386 EYQNDPVSWFQKRIRGN---------------MAVLTDHISKEMNELNLIRCQKIPKRPG 1430
             Y+  P + FQ+ IR                   +L+DH    + E +  R   IPKR G
Sbjct: 511  AYEKPPETEFQRFIRSTEHEMTGSSQRGTTQMNNLLSDHRPYALTEEDCARVCLIPKRKG 570

Query: 1431 ADWHDLP------DEKVKLSTGQVVDLIPW---CLPNTAKRHNQWKGL--FGRLDWEGNF 1479
            A++ DLP      D  V+    +   L+P     +P+ A    Q K    + RL W+   
Sbjct: 571  ANFRDLPGILVGNDNVVRRDPTKEQVLLPSGKPLVPDFAFTFEQGKSKRPYARLWWDETV 630

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT +T P    +  +  HP+QDR LT+RECAR QGFPD Y+F G+++ ++RQIGNAV   
Sbjct: 631  PTVVTYPSIHSQAML--HPEQDRALTIRECARLQGFPDYYRFSGTVKERYRQIGNAVAVP 688

Query: 1540 LAFALGRKLKEA 1551
            +  ALG  L  A
Sbjct: 689  VGRALGYALGMA 700



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 996  KVRRFFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIF 1054
            +V+ F+R +D +  E+A   D + ++YS   +   ++ I  K  + +   +    +    
Sbjct: 41   RVQWFYRAEDTVIKEEAGFHDKKRLFYSTIMNDNPIDCIISKVRIVQLPSMIGSKSSIRS 100

Query: 1055 QHIFF-CEHLHDPSKGSLKQLPAHIKLRYSSGSLDS-EAASRRKKGKCIEGEDELEVEKQ 1112
               +F  E+  D S      +  H  LR +S S +  EA S       +E         +
Sbjct: 101  TDFYFDMEYNVDYSSFRTLLIGKHFCLRDNSSSPNVVEAVSTTGGNTSLEN-------MR 153

Query: 1113 GGASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLNHPES 1166
               S +  LA LD+F+GCGG+S GL      S     T+WA++  + A E+ KLNHPE+
Sbjct: 154  SSESNKAELALLDLFSGCGGMSTGLCLGAKVSCVDLVTRWALDSNKSACESLKLNHPET 212


>gi|162460714|ref|NP_001105167.1| DNA (cytosine-5)-methyltransferase 3 [Zea mays]
 gi|75167623|sp|Q9ARI6.1|CMT2_MAIZE RecName: Full=DNA (cytosine-5)-methyltransferase 2; AltName:
            Full=Chromomethylase 2; AltName: Full=DNA cytosine
            methyltransferase MET5; AltName: Full=Zea
            methyltransferase5; Short=Zmet5
 gi|13272199|gb|AAK15805.1| chromomethylase [Zea mays]
          Length = 915

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 193/673 (28%), Positives = 290/673 (43%), Gaps = 146/673 (21%)

Query: 998  RRFFRPDDISAEK-------AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D             +  D R V+ SEE +   ++ I  K ++   +  P  + 
Sbjct: 227  RWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMDP 284

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDE-LEV 1109
             A  Q I  C+  +D S        A+I     +G   SE AS       I  +D  LE 
Sbjct: 285  KAKAQLIEHCDLYYDMSYSVAYSTFANIS--SENGQSGSETAS------GISSDDAGLET 336

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHP 1164
                    E     LD+++GCGG+S GL      SG+   T+WA++    A ++ K NHP
Sbjct: 337  SSN---MPERTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHP 393

Query: 1165 ES----------LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN-------- 1206
            ++          L L+    V+    + +  D +  ++ SE  E A +LD++        
Sbjct: 394  QTEVRNEKADEFLALLKEWAVLCEKYVHQ--DVDSNLAGSEDQEDADTLDKDEFVVQKLI 451

Query: 1207 ------------------------------VINNL---PL-----------------PGQ 1216
                                           I+NL   PL                 PG 
Sbjct: 452  GIRYDGTGRKKGVYFKVQWEEYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGD 511

Query: 1217 VDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            VD I GGPPCQG SG NRF          + + ++ F+    Y +P+Y L+ENV + + F
Sbjct: 512  VDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKF 571

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
              G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P P +  
Sbjct: 572  ADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDV 631

Query: 1335 ----AAPEL--KIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
                 AP    + M++ D  Q  +++        +A+ + D   DLP V N     +MEY
Sbjct: 632  VVRGGAPNAFSQCMVAYDETQRPSLK--------KALLLGDAFSDLPKVENHQPNDVMEY 683

Query: 1388 QNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
               P + FQ+ IR                 +   L DH    +N  +  R ++IP + GA
Sbjct: 684  GGSPKTEFQRYIRLGRKDMLDWSFGEEAGPDEGKLLDHQPLRLNNDDYERVKQIPVKKGA 743

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKRHNQWKGL--FGRLDWEGN 1478
            ++ DL  + VK+    VV+  P             +P+ A    + K L  FGRL W+  
Sbjct: 744  NFRDL--KGVKVGANNVVEWDPEVERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDQT 801

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K+ Q+GNAV  
Sbjct: 802  VPTVVTRAEPHNQV--ILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAV 859

Query: 1539 TLAFALGRKLKEA 1551
             +A ALG  L +A
Sbjct: 860  PVARALGYCLGQA 872


>gi|75157426|sp|Q8LPU5.1|CMT3_MAIZE RecName: Full=DNA (cytosine-5)-methyltransferase 3; AltName:
            Full=Chromomethylase 3; AltName: Full=DNA
            methyltransferase 105
 gi|20977600|gb|AAM28227.1| DNA methyltransferase 105 [Zea mays]
 gi|414585461|tpg|DAA36032.1| TPA: DNA (cytosine-5)-methyltransferase 2 [Zea mays]
          Length = 915

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 193/673 (28%), Positives = 290/673 (43%), Gaps = 146/673 (21%)

Query: 998  RRFFRPDDISAEK-------AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D             +  D R V+ SEE +   ++ I  K ++   +  P  + 
Sbjct: 227  RWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMDP 284

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDE-LEV 1109
             A  Q I  C+  +D S        A+I     +G   SE AS       I  +D  LE 
Sbjct: 285  KAKAQLIEHCDLYYDMSYSVAYSTFANIS--SENGQSGSETAS------GISSDDAGLET 336

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHP 1164
                    E     LD+++GCGG+S GL      SG+   T+WA++    A ++ K NHP
Sbjct: 337  SSN---MPERTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHP 393

Query: 1165 ES----------LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN-------- 1206
            ++          L L+    V+    + +  D +  ++ SE  E A +LD++        
Sbjct: 394  QTEVRNEKADEFLALLKEWAVLCEKYVHQ--DVDSNLAGSEDQEDADTLDKDEFVVQKLI 451

Query: 1207 ------------------------------VINNL---PL-----------------PGQ 1216
                                           I+NL   PL                 PG 
Sbjct: 452  GIRYDGTGRKKGVYFKVQWEGYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGD 511

Query: 1217 VDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            VD I GGPPCQG SG NRF          + + ++ F+    Y +P+Y L+ENV + + F
Sbjct: 512  VDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKF 571

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
              G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P P +  
Sbjct: 572  ADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDV 631

Query: 1335 ----AAPEL--KIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
                 AP    + M++ D  Q  +++        +A+ + D   DLP V N     +MEY
Sbjct: 632  VVRGGAPNAFSQCMVAYDETQRPSLK--------KALLLGDAFSDLPKVENHQPNDVMEY 683

Query: 1388 QNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
               P + FQ+ IR                 +   L DH    +N  +  R ++IP + GA
Sbjct: 684  GGSPKTEFQRYIRLGRKDMLDWSFGEEAGPDEGKLLDHQPLRLNNDDYERVKQIPVKKGA 743

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKRHNQWKGL--FGRLDWEGN 1478
            ++ DL  + VK+    VV+  P             +P+ A    + K L  FGRL W+  
Sbjct: 744  NFRDL--KGVKVGANNVVEWDPEVERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDET 801

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K+ Q+GNAV  
Sbjct: 802  VPTVVTRAEPHNQV--ILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAV 859

Query: 1539 TLAFALGRKLKEA 1551
             +A ALG  L +A
Sbjct: 860  PVARALGYCLGQA 872


>gi|218188370|gb|EEC70797.1| hypothetical protein OsI_02246 [Oryza sativa Indica Group]
          Length = 907

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 194/381 (50%), Gaps = 50/381 (13%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   +      + + ++ F+    Y +P+Y L+ENV
Sbjct: 498  LPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 557

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  L+ L+ M YQ R G++ AG +G+ Q R R F+W A P   LP++P
Sbjct: 558  VDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYP 617

Query: 1329 EPMHVF----AAPEL---KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H       AP      I+  D  Q   +++        A+ + D I DLP V N   
Sbjct: 618  LPTHNVVVRGGAPNAFSQSIVAYDETQKPTLKN--------ALLLGDAISDLPEVNNHQP 669

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY + P + FQ+ IR                 ++  L DH   ++N+ +  R Q+I
Sbjct: 670  NEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQI 729

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIP-----------WCLPNTAKRHNQWKGL--FGR 1472
            P + GA++ DL  + V++    +V+  P             +P+ A    + + L  FGR
Sbjct: 730  PVKKGANFRDL--KGVRVGANNIVEWDPDVPRVYLSSGKPLVPDYAMSFIKGRSLKPFGR 787

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT +T  +P  ++    HP+Q R+LTVRE AR QGFPD Y+  G I+ K+ Q+
Sbjct: 788  LWWDETVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQV 845

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAV   +A ALG  L  A +
Sbjct: 846  GNAVAVPVARALGYSLGLAYQ 866



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 998  RRFFRPDD-----ISAEKA--YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D     I  E A     D++ V+ SEE +   ++ I  K ++   +  P   +
Sbjct: 211  RWFFRAEDTVISSIMMENADDEKHDLKRVFLSEEKNDNVLDCIISKVKIVHID--PNMES 268

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A  + +  C+  +D S        A+I L   +   D+ +          +G+    V 
Sbjct: 269  EAKARRLADCDLYYDMSYTVAYSTFANIPLENGASGSDTASDISSDDVDSSKGK----VV 324

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPE 1165
                AS       LD+++GCGG+S GL      +G++  T+WA+++   A E+ K NHP 
Sbjct: 325  SDSEASSVGKATLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPR 384

Query: 1166 S 1166
            +
Sbjct: 385  T 385


>gi|116062018|dbj|BAF34637.1| chromomethylase [Brassica rapa]
          Length = 805

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 193/374 (51%), Gaps = 36/374 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF   +      + E +L ++   ++ +P+Y L+ENV
Sbjct: 416  LPLPGGVDVVCGGPPCQGISGYNRFRNEKEPLKDKKNEQLLEYMKIVEFLKPKYVLMENV 475

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  +  L++M YQ R G++ AG++G++Q R+R F+W A   +TLP++P
Sbjct: 476  VDMLRFVDGFLARYAVGRLVQMNYQTRMGMMAAGSYGLAQFRRRFFLWGAMSSETLPQFP 535

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
             P H  A     + ++ +    A   T N      + + D + DLP V N   +  M Y 
Sbjct: 536  LPTHD-AVNRGHVPVNFHSNVVAYEETDNVKLADKILLSDVLTDLPVVANNERRAEMPYD 594

Query: 1389 NDPVSWFQKRIR----GNMA------------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
             DP + FQK IR    G +A            VL DH    +N+ +  R  +IPK+  A+
Sbjct: 595  KDPKTPFQKFIRLTQEGMLASPKDPKSNSKNEVLYDHHPLNLNKDDYQRVCRIPKKKQAN 654

Query: 1433 WHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKR--HNQWKGLFGRLDWEGNF 1479
            + DLP   V ++    V+  P             +P  A +    + K  FGRL W+   
Sbjct: 655  FRDLPG--VTVNANNKVEWDPKIPRIYLESNHPLIPEYAMKFVEGKSKKPFGRLWWDETV 712

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT I   +P   V    HP+QDR+LTVRE AR QGFPD Y+  G  + K+ Q+GNAV   
Sbjct: 713  PTVIGRAEPHNHV--IIHPNQDRVLTVRENARLQGFPDYYRLFGPTKKKYTQVGNAVAVP 770

Query: 1540 LAFALGRKLKEAVE 1553
            +A ALG  L +A +
Sbjct: 771  VARALGYALGQAFQ 784



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 1116 SQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPESLM 1168
            +Q      LD++ GCG +S GL    Q SG+   TKWA++  E A ++ K NHPE+++
Sbjct: 240  NQRTDATMLDLYCGCGAMSTGLCMGAQLSGLKLVTKWAVDTCEYAVQSIKYNHPETVV 297


>gi|226088548|dbj|BAH37019.1| chromomethylase OsMET2a [Oryza sativa Japonica Group]
          Length = 907

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 194/381 (50%), Gaps = 50/381 (13%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   +      + + ++ F+    Y +P+Y L+ENV
Sbjct: 498  LPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 557

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  L+ L+ M YQ R G++ AG +G+ Q R R F+W A P   LP++P
Sbjct: 558  VDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYP 617

Query: 1329 EPMHVF----AAPEL---KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H       AP      I+  D  Q   +++        A+ + D I DLP V N   
Sbjct: 618  LPTHNVVVRGGAPNAFSQSIVAYDETQKPTLKN--------ALLLGDAISDLPEVNNHQP 669

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY + P + FQ+ IR                 ++  L DH   ++N+ +  R Q+I
Sbjct: 670  NEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQI 729

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIP-----------WCLPNTAKRHNQWKGL--FGR 1472
            P + GA++ DL  + V++    +V+  P             +P+ A    + + L  FGR
Sbjct: 730  PVKKGANFRDL--KGVRVGANNIVEWDPDVPRVYLSSGKPLVPDYAMSFIKGRSLKPFGR 787

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT +T  +P  ++    HP+Q R+LTVRE AR QGFPD Y+  G I+ K+ Q+
Sbjct: 788  LWWDETVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQV 845

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAV   +A ALG  L  A +
Sbjct: 846  GNAVAVPVARALGYSLGLAYQ 866



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 998  RRFFRPDD-----ISAEKA--YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D     I  E A     D++ V+ SEE +   ++ I  K ++   +  P   +
Sbjct: 211  RWFFRAEDTVISSIMMENADDEKHDLKRVFLSEEKNDNVLDCIISKVKIVYID--PNMES 268

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A  + +  C+  +D S        A+I L   +   D+ +          +G+    V 
Sbjct: 269  EAKARRLADCDLYYDMSYTVAYSTFANIPLENGASGSDTASDISSDDVDSSKGK----VV 324

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPE 1165
                AS       LD+++GCGG+S GL      +G++  T+WA+++   A E+ K NHP 
Sbjct: 325  SDSEASSVGKATLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPR 384

Query: 1166 S 1166
            +
Sbjct: 385  T 385


>gi|222612319|gb|EEE50451.1| hypothetical protein OsJ_30466 [Oryza sativa Japonica Group]
          Length = 907

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 194/381 (50%), Gaps = 50/381 (13%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   +      + + ++ F+    Y +P+Y L+ENV
Sbjct: 498  LPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 557

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  L+ L+ M YQ R G++ AG +G+ Q R R F+W A P   LP++P
Sbjct: 558  VDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYP 617

Query: 1329 EPMHVF----AAPEL---KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H       AP      I+  D  Q   +++        A+ + D I DLP V N   
Sbjct: 618  LPTHNVVVRGGAPNAFSQSIVAYDETQKPTLKN--------ALLLGDAISDLPEVNNHQP 669

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY + P + FQ+ IR                 ++  L DH   ++N+ +  R Q+I
Sbjct: 670  NEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQI 729

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIP-----------WCLPNTAKRHNQWKGL--FGR 1472
            P + GA++ DL  + V++    +V+  P             +P+ A    + + L  FGR
Sbjct: 730  PVKKGANFRDL--KGVRVGANNIVEWDPDVPRVYLSSGKPLVPDYAMSFIKGRSLKPFGR 787

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT +T  +P  ++    HP+Q R+LTVRE AR QGFPD Y+  G I+ K+ Q+
Sbjct: 788  LWWDETVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQV 845

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAV   +A ALG  L  A +
Sbjct: 846  GNAVAVPVARALGYSLGLAYQ 866



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 998  RRFFRPDD-----ISAEKA--YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D     I  E A     D++ V+ SEE +   ++ I  K ++   +  P   +
Sbjct: 211  RWFFRAEDTVISSIMMENADDEKHDLKRVFLSEEKNDNVLDCIISKVKIVYID--PNMES 268

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A  + +  C+  +D S        A+I L   +   D+ +          +G+    V 
Sbjct: 269  EAKARRLADCDLYYDMSYTVAYSTFANIPLENGASGSDTASDISSDDVDSSKGK----VV 324

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPE 1165
                AS       LD+++GCGG+S GL      +G++  T+WA+++   A E+ K NHP 
Sbjct: 325  SDSEASSVGKATLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPR 384

Query: 1166 S 1166
            +
Sbjct: 385  T 385


>gi|393216766|gb|EJD02256.1| S-adenosyl-L-methionine-dependent methyltransferase, partial
            [Fomitiporia mediterranea MF3/22]
          Length = 1118

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 228/915 (24%), Positives = 363/915 (39%), Gaps = 201/915 (21%)

Query: 739  ITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLP---------VIYFVEYM 789
            I W  E     GL  YK   + G    +   V V  D   +           ++YF E  
Sbjct: 274  IAWGEEIPASQGL--YKSVFMDGVEYHMNDTVAVSTDGNGETAAGSSTWFGIIMYFYEVA 331

Query: 790  FEATG----GCKLFHGIIMQRGSHTVLGNTANEREVFLANQC--------------RDLE 831
                G      K FH    + GS T+LG TAN + +FL +QC              R L 
Sbjct: 332  ERKPGRSPRSGKYFHIRWFEHGSRTILGETANPQALFLLDQCDDNPVETILQKISVRHLS 391

Query: 832  LQDIKQTVVVD----IRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWP 887
            + D++  V+ D      S    ++  +D  +   VD   AE+  K  +   Y  +  Y  
Sbjct: 392  VSDLEPLVISDNDVGSSSFHLSYKWDQDKMSLSAVD-FDAEKSPKPSIARAYAAQPEY-- 448

Query: 888  ERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISP 947
                               C++C  K+S   +   +    T  +Y    Y V+D+VY+  
Sbjct: 449  -----------------EKCYSCAVKDSSAYRTNEESLPMTLEIYDK-HYHVNDFVYVK- 489

Query: 948  HHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDIS 1007
                            R +GL    + Q+ +I+ P +       + Q++V  F RP   +
Sbjct: 490  -------------MPTRQIGL--LEIAQIAKIL-PSD------GNPQLEVTLFERPK-YT 526

Query: 1008 AEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPS 1067
             ++A     R +  + +   +  + + G C + + +DI   +A            L  P 
Sbjct: 527  PKEATPLLQRSLLSTGKVKKMSADCLDGHCFILRISDIDDIDA-----------WLEGPD 575

Query: 1068 KGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
               + Q                      +  KC+    EL  E +    +E  L  +D+F
Sbjct: 576  NFVIDQ-----------------KRPLEQCQKCLIAR-ELFSESEDSV-KELPLRAMDLF 616

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDA 1187
            +G GGL+ G+ QSG   T WA+E    A ++ K NH ++++   +C+ +L+ V E     
Sbjct: 617  SGAGGLTTGMDQSGFIKTCWAVERCPAAAQSLKANHADTVVYNQDCSELLKHVAELHAGK 676

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM 1247
                  S   E  A      +  LP PG+VD I GGPPCQ FSGMN + +    +  C  
Sbjct: 677  TPPTLRSLGPENEA------LPPLPSPGEVDLIMGGPPCQPFSGMNSWKRVDDIRQTC-- 728

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFN-KGQ-------------TFRLTLASLLEMGYQ 1293
            I   LS+ +++ P+Y  +ENV   + +  KG+               +  + +   +GYQ
Sbjct: 729  IPTVLSYVEFYSPKYVCIENVTGLLYYRLKGRQEGRRIVGGIESGMVKFVMRAFTSLGYQ 788

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
             +  +L A  +G  Q R R   WAA     LP+WP   H+       +       + A  
Sbjct: 789  CQMKVLNAADYGSPQQRNRVIFWAARLDLALPKWPTQTHIPRQGHKAVQRRITNGFLAPL 848

Query: 1354 STAN-------GAPFRAMTVRDTIGDLPA---------VGNGASK----------TI--- 1384
            ++ N        APF A+T+++ I DLPA           +GA K          T+   
Sbjct: 849  ASRNESGEKHEQAPFYAVTIKEAIDDLPAWDWENPGIVYPDGARKQDSNKPTFPATVDQR 908

Query: 1385 ----------------MEYQNDPVSWFQKRIR---GNMAVLTDHISKEMNELNLIRCQKI 1425
                            + Y + P + +Q   R   G++A +  H +     L + R   +
Sbjct: 909  KLDTEDAQAVSGYNYPVRYASAPRTLYQAFCRKGQGHLARVEAHCTILYPSLVVERTVNV 968

Query: 1426 PKRPGADWHDLPDE-KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            P +P A+++DLP   K + + G             +K+   W     RLD    F T +T
Sbjct: 969  PIKPLANFNDLPKSLKGEKAKGDA----------ESKKDTYW-----RLDENEQFRTLMT 1013

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS-------IQHKHRQIGNAVP 1537
               P  K     HP   R+L+ RE AR+QGFPD Y+F  +       +++  RQIGNAVP
Sbjct: 1014 SYNPGSKGACVIHPTDKRVLSARELARAQGFPDDYEFCPAEERIAVKMRNMQRQIGNAVP 1073

Query: 1538 PTLAFALGRKLKEAV 1552
              LA+ALGR L E +
Sbjct: 1074 VHLAYALGRALGEGL 1088



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 27/168 (16%)

Query: 366 QGSTSGMNKFYIKINEDEIANDYPFPVFYRPSEEEFDELLAYDSDYDSCDIDQLPRRMLH 425
           Q S+S +NK+   ++EDEI              ++  ELLA +SD    +   LP R+L 
Sbjct: 56  QASSSSINKY--TVHEDEINEC-----------DDLCELLA-ESDPAPGNRKTLPVRILT 101

Query: 426 DWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQ 485
            + +Y+ +S     ++LPM+   D D+  +G+    S +      D D+       S A 
Sbjct: 102 SFDIYDYESE--DRKVLPMEVDPDEDLVCYGASGFTSVQFQSDDEDEDA------FSDAV 153

Query: 486 DAGGFPIYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWY 533
           DA   P+ L++I+E   +       I IRT  AWY L  PS+ Y  +Y
Sbjct: 154 DAC-IPVKLTAIQEVWTDKDE----IWIRTHFAWYILEDPSESYQTYY 196


>gi|357140240|ref|XP_003571678.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3-like [Brachypodium
            distachyon]
          Length = 898

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/385 (34%), Positives = 193/385 (50%), Gaps = 50/385 (12%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG V+ I GGPPCQG SG NRF   +      + + ++ F+    Y +P++ L+E
Sbjct: 487  NILPLPGDVEVICGGPPCQGISGFNRFRNRKEPLKDEKNQQMVTFMDIVSYLKPKFVLME 546

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  L+ L+ + YQ R GI+ AG +G+ Q R R F+W A P   LP+
Sbjct: 547  NVVDILKFADGYLGRYALSRLVSLNYQARLGIMVAGCYGLPQFRMRVFLWGALPAMVLPK 606

Query: 1327 WPEPMHVF----AAPEL---KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG 1379
            +P P H       AP      I+  D  Q   ++        +A+ + D I DLP   N 
Sbjct: 607  YPLPTHDVVVRGGAPNAFSQSIVAYDETQKPTLK--------KALLLGDAISDLPKANNF 658

Query: 1380 ASKTIMEYQNDPVSWFQKRIR-----------GNMAV-----LTDHISKEMNELNLIRCQ 1423
                +MEY   P + FQ  IR           G+        L DH    +N+ +  R Q
Sbjct: 659  QPHEVMEYGAQPKTEFQSYIRLSRKDMLDYSFGDNTCPEEGKLLDHQPLRLNQDDYDRVQ 718

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKRHNQWKGL--F 1470
            +IP + GA++ DLP   VK+    +V+  P             +P+ A    + + L  F
Sbjct: 719  QIPVKKGANFRDLPG--VKVGANNIVEWDPEVQRVYLKSGKPLVPDYAMSFIKGRSLKPF 776

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            GRL W+   PT +T  +P  ++    HP+Q R+LTVRE AR QGFPD Y+ +G I+ K+ 
Sbjct: 777  GRLWWDETVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYRMNGPIKEKYI 834

Query: 1531 QIGNAVPPTLAFALGRKLKEAVESK 1555
            Q+GNAV   +A ALG  L  A + +
Sbjct: 835  QVGNAVAVPVARALGYSLGRAYQGE 859


>gi|330370547|gb|AEC12443.1| chromomethylase 3 [Gossypium hirsutum]
          Length = 824

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/409 (32%), Positives = 205/409 (50%), Gaps = 54/409 (13%)

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ--S 1238
            ++  GD  +C+     +   A +       LPLPG VD I GGPPCQG SG NRF    +
Sbjct: 402  LDGLGDCRECLKDFVTSGFKAKI-------LPLPGDVDVICGGPPCQGISGFNRFRNKDN 454

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 + + +  F    +Y +P++ L+ENV + V F +G   R  L+ L+ + YQVR G+
Sbjct: 455  PLQDEKNKQLQVFTEIVEYLKPKFVLMENVVDIVKFAEGYLGRYALSKLIHLNYQVRMGM 514

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            + AGA+G+ Q R RAF W A P+  LP++P P H      L+ ++   ++ + V     G
Sbjct: 515  MAAGAYGLPQFRMRAFFWGARPNQKLPQYPLPTHDLV---LRGVIPVEFEMNTV-GWEEG 570

Query: 1359 APF---RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR--------------- 1400
                  + + + D I DLP+VGN   K  M+Y+ +P + FQ+ IR               
Sbjct: 571  KKIELEKKLLLEDAISDLPSVGNYEDKDEMDYEKEPKTEFQRFIRLRREEMPGFSSLNAK 630

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD---------------EKVKLST 1445
                +L DH   ++N  +  R  ++PKR GA++ D P                E+V L +
Sbjct: 631  PTKHLLYDHRPLQLNTDDYQRVCRVPKRKGANFRDFPGVIVNSGNKVEWDPNVERVYLES 690

Query: 1446 GQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1504
            G+   L+P + +       ++    F RL W+   PT +T  +P  +     HP QDR+L
Sbjct: 691  GK--PLVPDYAMSFVGGSSSK---PFARLWWDETVPTVVTRAEPHNQA--ILHPVQDRVL 743

Query: 1505 TVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            ++RE AR QGFPD Y+  G ++ ++ Q+GNAV   ++ ALG  L  A +
Sbjct: 744  SIRENARLQGFPDYYKLFGPVKERYIQVGNAVAVPVSRALGYALGLAYQ 792



 Score = 47.4 bits (111), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 33/181 (18%)

Query: 1000 FFRPDDISAEK-AYCSDIREVYYSEETHLIFVEAIAGKCEVRK-----KN-DIPACNAPA 1052
            F+R  D   +   +  D + V++S+      ++ +  K  + K     KN +IP+C+   
Sbjct: 141  FYRAQDTVLKTLGHLIDKKRVFFSQIQDDNPLDCLVAKLNIAKVDLEAKNKEIPSCD--- 197

Query: 1053 IFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQ 1112
                 ++C+ L+     S   LP   K   S      EA+S           D+      
Sbjct: 198  -----YYCDMLYKLEYSSFTNLPPEGKTNASE-----EASSTIS--------DDSPDTVN 239

Query: 1113 GGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPESL 1167
            G  S     + LD+++GCG +S GL      +G+   TKWA++  + A E+ + NHPE+ 
Sbjct: 240  GANSGSEDASLLDLYSGCGAMSTGLCLGANMAGLRLVTKWAVDINKYACESLQWNHPETT 299

Query: 1168 M 1168
            +
Sbjct: 300  V 300


>gi|302785127|ref|XP_002974335.1| hypothetical protein SELMODRAFT_30570 [Selaginella moellendorffii]
 gi|300157933|gb|EFJ24557.1| hypothetical protein SELMODRAFT_30570 [Selaginella moellendorffii]
          Length = 773

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 198/367 (53%), Gaps = 35/367 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQC---EMILAFLSFADYFQPRYFLLEN 1267
            LPLPG VD + GGPPCQG SG NRF ++T + + C     ++ F+    + +P++ L+EN
Sbjct: 394  LPLPGDVDMVCGGPPCQGASGYNRF-RNTEAPLTCPRNRQMVIFMDIVGFLRPKFVLMEN 452

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V + + F +G   R  +  L++M YQ + G++ AG++G+ Q R R F+W A+P + LP +
Sbjct: 453  VVDILKFQQGLLGRYAMFRLVDMRYQAKLGMMAAGSYGLPQFRMRVFLWGAAPSEMLPAF 512

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
            P P H       K  + + +  + V+        +A+ + D+I DLP V N  ++  + Y
Sbjct: 513  PLPTH---DAIYKGNVPNQFSRNVVKHIGERQLEKALFLGDSISDLPPVKNCETRDEIPY 569

Query: 1388 QNDPVSWFQKRIRG---NMAV------------LTDHISKEMNELNLIRCQKIPKRPGAD 1432
            ++ P + FQKRIR    + AV            + DH    +N+ +  R  +IPKR GA+
Sbjct: 570  RDGPKTEFQKRIRSARDDFAVFYGRGPRAMNSTVHDHRPLRLNDDDYQRACRIPKRKGAN 629

Query: 1433 WHDLPDEKVKLSTGQVVDL------IPW---CLPNTAKRHNQWKGL--FGRLDWEGNFPT 1481
            + DL   K+K      +DL      +P     +P+ A    + + L  F R+ W+   PT
Sbjct: 630  FRDLGGLKIKDDNSVTLDLTVEREYLPSGKPLIPDYAISFIKGRSLKPFARMWWDETVPT 689

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             IT  +P        HP QDR+LTVRE AR QGFPD Y+  GS++ ++ Q+GNAV   +A
Sbjct: 690  VITRAEPHNH--RMLHPTQDRVLTVRENARLQGFPDWYKLTGSVKERYIQVGNAVAVPVA 747

Query: 1542 FALGRKL 1548
             ALG  L
Sbjct: 748  RALGFSL 754



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLNHPES 1166
            L  LD++ GCG +S GL            TKWA++Y E A  + K NHPE+
Sbjct: 215  LILLDLYCGCGAMSTGLSMGAALGGVKLVTKWAVDYNEHACNSMKYNHPET 265


>gi|297841705|ref|XP_002888734.1| chromomethylase CMT3 [Arabidopsis lyrata subsp. lyrata]
 gi|297334575|gb|EFH64993.1| chromomethylase CMT3 [Arabidopsis lyrata subsp. lyrata]
          Length = 838

 Score =  214 bits (544), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 194/377 (51%), Gaps = 45/377 (11%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD + GGPPCQG SG NRF          + + +L +++  ++ +P+Y L+ENV
Sbjct: 445  LPLPGGVDVVCGGPPCQGISGHNRFRNLLEPLKDEKNKQLLVYMNIVEFLKPKYVLMENV 504

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  ++G   R  +  L++M YQVR G++ AGA+G++Q R R F+W A P   +P++P
Sbjct: 505  VDMLKMSEGYLARYAVGRLIQMNYQVRMGMMAAGAYGLAQFRLRFFLWGALPSMMIPQFP 564

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA--MTVRDTIGDLPAVGNGASKTIME 1386
             P H       +  +   +Q + V          A  + +RD I DLPAV N   +  + 
Sbjct: 565  LPTHDLVQ---RGNIVKEFQGNTVAYDEGHTVKLADKLLLRDVISDLPAVDNSEQRDEIP 621

Query: 1387 YQNDPVSWFQKRIR-------GNMA-------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            Y  DPV+ FQ+ IR       G++        VL DH    +N  +  R  ++PKR GA+
Sbjct: 622  YDQDPVTPFQQFIRLRKDEALGSLTKSKSKKHVLYDHHPLNLNINDYQRVCRVPKRKGAN 681

Query: 1433 WHDLP--------------DEKVKLSTGQVVDLIPWCLPNTAKRH--NQWKGLFGRLDWE 1476
            + D P              D K+ L +G+ +      +PN A           FGRL W+
Sbjct: 682  FRDFPGVIVGPGNVVHLDEDMKIMLQSGKQL------VPNYALTFVDGTSSKPFGRLWWD 735

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
               PT +T  +P  +V    HP QDR+L++RE AR QGFPD Y+  G  + K+ Q+GNAV
Sbjct: 736  EIVPTVVTRAEPHNQV--IIHPTQDRVLSIRENARLQGFPDDYKLFGPTKQKYIQVGNAV 793

Query: 1537 PPTLAFALGRKLKEAVE 1553
               +A ALG  L  A +
Sbjct: 794  AVPVAKALGYALGIAFQ 810



 Score = 41.2 bits (95), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S GL    Q SG++  TKWA++    A ++   NHPE+
Sbjct: 272  LDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLGHNHPET 319


>gi|255579031|ref|XP_002530367.1| protein with unknown function [Ricinus communis]
 gi|223530114|gb|EEF32028.1| protein with unknown function [Ricinus communis]
          Length = 845

 Score =  213 bits (541), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 189/367 (51%), Gaps = 39/367 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG  DFI GGPPCQG SG NRF   ++     +   ++ ++   +Y +P+Y L+ENV
Sbjct: 455  LPLPGDADFICGGPPCQGISGFNRFRNTKAPLDDPKNHQMVVYMDIVEYLKPKYVLMENV 514

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  L  L+ M YQ R G++ AG++G+ Q R R F+W + P ++LP++P
Sbjct: 515  VDILRFAGGFLVRYALGRLISMNYQARLGMMAAGSYGLPQFRMRVFMWGSQPSESLPQYP 574

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF----RAMTVRDTIGDLPAVGNGASKTI 1384
             P H     E+ +      ++  +    N        +A+ + D I DLP V N  S+  
Sbjct: 575  LPTH-----EVVVKGGIPNEFEEITVAYNKLDPCQLEKALYLGDAILDLPPVNNDESQDE 629

Query: 1385 MEYQNDPVSWFQKRIR---------------GNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
             +Y   P S FQK IR                +  +L DH   ++N+ +  R  ++PK+ 
Sbjct: 630  RKYGTTPQSDFQKYIRLKKSDVVGFATDKNASHPQMLYDHRPLKLNDDDYQRVCRVPKKK 689

Query: 1430 GADWHDLP------DEKVKLSTGQVVDLIPW---CLPNTAKRHNQWKGL--FGRLDWEGN 1478
            GA++ D P      D KV+        L+P     +P+ A    +      FGRL W+  
Sbjct: 690  GANFRDFPGVLVGTDNKVEWDPAVERVLLPSGKPLVPDYAMSFVRGTSCKPFGRLWWDET 749

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
              T +T  +P  ++    HP QDR+L++RE AR QGFPD YQ HG ++ ++ Q+GNAV  
Sbjct: 750  VATVVTRAEPHNQI--VIHPMQDRVLSIRENARLQGFPDCYQLHGPVKERYTQVGNAVAV 807

Query: 1539 TLAFALG 1545
             +A ALG
Sbjct: 808  PVATALG 814



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 1107 LEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKL 1161
            L+V  +  +S+++ L  LD+++GCG +S GL      SG+   TKWA++    A ++ K 
Sbjct: 261  LKVLSKVHSSEKSELYLLDLYSGCGAMSTGLCMGASLSGVKLVTKWAVDINAFACKSLKT 320

Query: 1162 NHPES 1166
            NHPE+
Sbjct: 321  NHPET 325


>gi|226088550|dbj|BAH37020.1| chromomethylase OsMET2b [Oryza sativa Japonica Group]
          Length = 690

 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 188/364 (51%), Gaps = 46/364 (12%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LPLPG VD I GGPPCQG SG NRF +        + + ++ F+    Y +P+Y L+E
Sbjct: 337  NILPLPGAVDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRPKYVLME 396

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  ++ L+ M YQ R G++ AG +G+ Q R RAF+W A P   LP+
Sbjct: 397  NVVDILKFADGFLGRYAMSCLVAMNYQARLGMMAAGYYGLPQFRMRAFLWGALPSMVLPK 456

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR-AMTVRDTIGDLPAVGNGASKTIM 1385
            +P P H   A    I+ +   Q     +  +    R A+ + D I DLP VGN   K ++
Sbjct: 457  FPLPTH--DAVVRGIVPTTFSQSVVAYNEVDTRCLRKALLLADAISDLPKVGNDQPKDVI 514

Query: 1386 EYQNDPVSWFQKRIRGNM----------------AVLTDHISKEMNELNLIRCQKIPKRP 1429
            EY   P + FQ+ IR N                   L DH   ++N+ +  R Q+IP + 
Sbjct: 515  EYSVAPKTEFQRYIRNNRKDIQDYSFRGDDPSEEGKLFDHQPLKLNKDDYERVQRIPVKK 574

Query: 1430 GADWHDL------PDEKV---------KLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGR 1472
            GA++ DL      PD  V         +LS+G+ +      +P+ A    + K    FGR
Sbjct: 575  GANFRDLKGVIVGPDNTVRLDPNISRERLSSGKPL------VPDYAISFVKGKSTKPFGR 628

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT +T  +P  ++    HP QDR+LT+RE AR QGFPD Y+  G ++ K+ Q+
Sbjct: 629  LWWDETVPTVVTRAEPHNQI--ILHPSQDRVLTIRENARLQGFPDYYRLIGPLKEKYIQV 686

Query: 1533 GNAV 1536
            GNAV
Sbjct: 687  GNAV 690



 Score = 48.9 bits (115), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 1000 FFRPDD--ISAEKAYCSDIRE----VYYSEETHLIFVEAIAGKCEVRK--KNDIPACNAP 1051
            FFR  D  IS++     D R     V+ S+E +   +E I  K ++     N  P   A 
Sbjct: 45   FFRTADTVISSKLLKVHDHRHNHKRVFLSKEKNDNLIECIVSKVKIAHVDPNMTPQARAH 104

Query: 1052 AIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGED----EL 1107
            AI     + +  +  +  +   LPA      + G+L SEA S      C + ++    +L
Sbjct: 105  AISDCDLYYDMSYSVAYSTFANLPAD-----NDGALGSEATSNIS---CDDADNSSKGKL 156

Query: 1108 EVEKQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKL 1161
              +     S++   A+L D+++GCG +S GL      SGI+  T+WA++  + A    K 
Sbjct: 157  SADIVAPYSEQTETASLLDLYSGCGAMSTGLCLGFAFSGINLETRWAVDINKYACACLKH 216

Query: 1162 NHPES 1166
            NHP S
Sbjct: 217  NHPYS 221


>gi|302818367|ref|XP_002990857.1| hypothetical protein SELMODRAFT_132507 [Selaginella moellendorffii]
 gi|300141418|gb|EFJ08130.1| hypothetical protein SELMODRAFT_132507 [Selaginella moellendorffii]
          Length = 933

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 195/367 (53%), Gaps = 35/367 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQC---EMILAFLSFADYFQPRYFLLEN 1267
            LPLPG VD + GGPPCQG SG NRF ++T + + C     ++ F+    + +P++ L+EN
Sbjct: 547  LPLPGDVDMVCGGPPCQGASGYNRF-RNTEAPLTCPRNRQMVIFMDIVGFLRPKFVLMEN 605

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V + + F +G   R  +  L++M YQ + G++ AG++G+ Q R R F+W A+P + LP +
Sbjct: 606  VVDILKFQQGLLGRYAMFRLVDMRYQAKLGMMAAGSYGLPQFRMRVFLWGAAPSEMLPAF 665

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
            P P H       K  + + +  + V+        +A+ + D+I DLP V N  ++  + Y
Sbjct: 666  PLPSHDAI---YKGNVPNQFSRNVVKHIGERQLEKALFLGDSISDLPPVKNCETRDEIPY 722

Query: 1388 QNDPVSWFQKRIRGNM---------------AVLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            ++ P + FQ RIR                  + + DH    +N+ +  R  +IPKR GA+
Sbjct: 723  RDGPKTEFQTRIRSARDDFTVFYGRGPRAMNSTVHDHRPLRLNDDDYQRACRIPKRKGAN 782

Query: 1433 WHDLPDEKVKLSTGQVVDL------IPW---CLPNTAKRHNQWKGL--FGRLDWEGNFPT 1481
            + DL   K+K      +DL      +P     +P+ A    + + L  F R+ W+   PT
Sbjct: 783  FRDLGGLKIKDDNSVTLDLTVEREYLPSGKPLIPDYAISFIKGRSLKPFARMWWDETVPT 842

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             IT  +P        HP QDR+LTVRE AR QGFPD Y+  GS++ ++ Q+GNAV   +A
Sbjct: 843  VITRAEPHNH--RMLHPTQDRVLTVRENARLQGFPDWYKLTGSVKERYIQVGNAVAMPVA 900

Query: 1542 FALGRKL 1548
             ALG  L
Sbjct: 901  RALGYSL 907



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 1121 LATLDIFAGCGGLSEGLQQS----GIS-STKWAIEYEEPAGEAFKLNHPES 1166
            L  LD++ GCG +S GL       G++  TKWA++Y E A  + K NHPE+
Sbjct: 368  LILLDLYCGCGAMSTGLSMGAALGGVNLVTKWAVDYNEHACNSMKYNHPET 418


>gi|449462605|ref|XP_004149031.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis
            sativus]
          Length = 855

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 192/379 (50%), Gaps = 47/379 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   ++     + + ++ ++   +Y +P+Y L+ENV
Sbjct: 457  LPLPGDVDVICGGPPCQGISGFNRFRNKENPLEDEKNKQLVVYMDLVEYLRPKYVLMENV 516

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQVR G++ AGA+G+ Q R R F+W A P + LP++P
Sbjct: 517  VDIVKFANGFLGRYALGRLISMNYQVRMGMMAAGAYGLPQFRMRMFMWGAQPTEKLPQYP 576

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
             P H      ++ ++   ++ + V            + + + D I DLPAV N   +  M
Sbjct: 577  LPTHDVV---VRGVIPTEFEMNVVAYEEGHKDVHLEKKLLLEDAISDLPAVENDERRDEM 633

Query: 1386 EYQNDPVSWFQKRIRG--------------NMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
             Y   P + FQ  IR                   L DH   E+N  +  R  +IPKR GA
Sbjct: 634  PYHEPPKTEFQHLIRSPREEMFDTSTMSKPATHPLYDHRPLELNTDDYQRVCQIPKRKGA 693

Query: 1432 DWHDL------PDEKVK---------LSTGQVVDLIPWCLPNTAKR--HNQWKGLFGRLD 1474
            ++ DL      PD++V+         L +G+ +      +P+ A    +      F RL 
Sbjct: 694  NFRDLSGVRVRPDKRVEWDPDVKRVYLESGKPL------VPDYAMSFVNGSSSKPFARLW 747

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+   PT +T  +P  +     HP+QDR++T+RE AR QGFPD Y+  G ++ ++ Q+GN
Sbjct: 748  WDETVPTVVTRAEPHNQA--ITHPEQDRVMTIRENARLQGFPDYYKLFGPVKERYIQVGN 805

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            AV   +A ALG  L  A +
Sbjct: 806  AVAVPVARALGYSLGMAFQ 824



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 47/244 (19%)

Query: 948  HHFTWDKAEGETFKAGRNVGLKPY-----VVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR 1002
            HH++  K +  T+    +  +K        +C+++E+        A         + ++R
Sbjct: 113  HHYSQAKVDNITYNLLDDAHVKAEGEEDDYICKIIEMF------EAVDGQLYFTAQWYYR 166

Query: 1003 PDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV--------RKKNDIPACNAPAI 1053
              D +  + A+  + + V++SE      ++ +  K  +         KKN +P+C+    
Sbjct: 167  AKDTVVKDHAHLINDKRVFFSEVRDDNPLDCLVKKLNIARIPLTMDEKKNCLPSCD---- 222

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQ- 1112
                F+C+ L+      L    + +KL  S   + SE +S       ++  +  EV  Q 
Sbjct: 223  ----FYCDMLY------LLPYSSFVKLPTSEKKVGSETSSTISSD--VDTNEACEVNSQI 270

Query: 1113 GGASQENH-----LATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLN 1162
            G  +Q        +A LD+++GCG +S GL      SG++  TKWA++  + A E+ + N
Sbjct: 271  GDVTQAQQCCKPDVALLDLYSGCGAMSTGLCLGGNLSGVNLVTKWAVDLNQYACESLRFN 330

Query: 1163 HPES 1166
            HPE+
Sbjct: 331  HPET 334


>gi|449526100|ref|XP_004170052.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like, partial
            [Cucumis sativus]
          Length = 753

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 192/379 (50%), Gaps = 47/379 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   ++     + + ++ ++   +Y +P+Y L+ENV
Sbjct: 355  LPLPGDVDVICGGPPCQGISGFNRFRNKENPLEDEKNKQLVVYMDLVEYLRPKYVLMENV 414

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQVR G++ AGA+G+ Q R R F+W A P + LP++P
Sbjct: 415  VDIVKFANGFLGRYALGRLISMNYQVRMGMMAAGAYGLPQFRMRMFMWGAQPTEKLPQYP 474

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
             P H      ++ ++   ++ + V            + + + D I DLPAV N   +  M
Sbjct: 475  LPTHDVV---VRGVIPTEFEMNVVAYEEGHKDVHLEKKLLLEDAISDLPAVENDERRDEM 531

Query: 1386 EYQNDPVSWFQKRIRG--------------NMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
             Y   P + FQ  IR                   L DH   E+N  +  R  +IPKR GA
Sbjct: 532  PYHEPPKTEFQHLIRSPREEMFDTSTMSKPATHPLYDHRPLELNTDDYQRVCQIPKRKGA 591

Query: 1432 DWHDL------PDEKVK---------LSTGQVVDLIPWCLPNTAKR--HNQWKGLFGRLD 1474
            ++ DL      PD++V+         L +G+ +      +P+ A    +      F RL 
Sbjct: 592  NFRDLSGVRVRPDKRVEWDPDVKRVYLESGKPL------VPDYAMSFVNGSSSKPFARLW 645

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+   PT +T  +P  +     HP+QDR++T+RE AR QGFPD Y+  G ++ ++ Q+GN
Sbjct: 646  WDETVPTVVTRAEPHNQA--ITHPEQDRVMTIRENARLQGFPDYYKLFGPVKERYIQVGN 703

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            AV   +A ALG  L  A +
Sbjct: 704  AVAVPVARALGYSLGMAFQ 722



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 47/244 (19%)

Query: 948  HHFTWDKAEGETFKAGRNVGLKPY-----VVCQLLEIIVPKEPKRAEVKSTQVKVRRFFR 1002
            HH++  K +  T+    +  +K        +C+++E+        A         + ++R
Sbjct: 11   HHYSQAKVDNITYNLLDDAHVKAEGEEDDYICKIIEMF------EAVDGQLYFTAQWYYR 64

Query: 1003 P-DDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV--------RKKNDIPACNAPAI 1053
              D +  + A+  + + V++SE      ++ +  K  +         KKN +P+C+    
Sbjct: 65   AKDTVVKDHAHLINDKRVFFSEVRDDNPLDCLVKKLNIARIPLTMDEKKNCLPSCD---- 120

Query: 1054 FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQ- 1112
                F+C+ L+      L    + +KL  S   + SE +S       ++  +  EV  Q 
Sbjct: 121  ----FYCDMLY------LLPYSSFVKLPTSEKKVGSETSSTISSD--VDTNEACEVNSQI 168

Query: 1113 GGASQENH-----LATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLN 1162
            G  +Q        +A LD+++GCG +S GL   G  S     TKWA++  + A E+ + N
Sbjct: 169  GDVTQAQQCCKPDVALLDLYSGCGAMSTGLCLGGNLSGVNLVTKWAVDLNQYACESLRFN 228

Query: 1163 HPES 1166
            HPE+
Sbjct: 229  HPET 232


>gi|357141720|ref|XP_003572323.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3-like [Brachypodium
            distachyon]
          Length = 897

 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 194/378 (51%), Gaps = 40/378 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   +      + + ++ F+    Y +P++ L+ENV
Sbjct: 488  LPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNQQMVTFMDIVSYLKPKFVLMENV 547

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  L+ L+ + YQ R G++ AG +G+ Q R R F+W A P   LP++P
Sbjct: 548  VDILKFADGYLGRYALSRLVALNYQARLGMMVAGCYGLPQFRMRVFLWGALPDMVLPKYP 607

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF--RAMTVRDTIGDLPAVGNGASKTIME 1386
             P +      ++ ++ + +  S V       P   +A+ + D I DLP   N     +ME
Sbjct: 608  LPTYDVV---VRGIVPNAFSQSVVAYDETQKPTLKKALLLGDAISDLPEANNYQLHEVME 664

Query: 1387 YQNDPVSWFQKRIR-----------GNMAV-----LTDHISKEMNELNLIRCQKIPKRPG 1430
            Y   P + FQ+ IR           G+        L DH    +N+ +  R Q+IP + G
Sbjct: 665  YGTKPKTEFQRYIRLGRKDMLDHSFGDNTCPEEGKLLDHQPLRLNQDDYDRVQQIPVKKG 724

Query: 1431 ADWHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKRHNQWKGL--FGRLDWEG 1477
            A++ DLP   +K+    +V+  P             +P+ A    + + L  FGRL W+ 
Sbjct: 725  ANFRDLPG--IKVGANNIVEWDPEVPRVYLKSGKPLVPDYAMSFIKGRSLKPFGRLWWDE 782

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T +T  +P  ++    HP+Q R+L+VRE AR QGFPD Y+ +G I+ K+ Q+GNAV 
Sbjct: 783  TVSTVVTRAEPHNQI--ILHPNQARVLSVRENARLQGFPDYYRMNGPIKEKYIQVGNAVA 840

Query: 1538 PTLAFALGRKLKEAVESK 1555
              +A ALG  L +A + +
Sbjct: 841  VPVARALGYSLGQAYQGE 858



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 37/182 (20%)

Query: 998  RRFFRPDDISAEKA-----YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPA 1052
            R FFRP+D     A     +  D + V+ SEET+   ++ I  K +              
Sbjct: 215  RWFFRPEDTVISTAKFVDDHTHDPKRVFLSEETNDNVLDCIIKKVK-------------- 260

Query: 1053 IFQHIFFCEHLHDPSKGSLKQLPAHIKLRYS-----SGSLDSEAASRRKKGKCIEGEDEL 1107
                I   +   DP   +     +  +L Y      + S  +   S   +   I  + +L
Sbjct: 261  ----IIHVDPNMDPEGKAQLVADSEAELYYDMSYAVAYSTFANIPSDTNENSGISSDADL 316

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLN 1162
            E     G       A LD+++GCGG+S GL      +G+   T+WA++    A ++ K N
Sbjct: 317  E----AGTPPVRTAALLDLYSGCGGMSTGLCLGAALAGLKLETRWAVDLNSFACKSLKYN 372

Query: 1163 HP 1164
            HP
Sbjct: 373  HP 374


>gi|297746421|emb|CBI16477.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  211 bits (536), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 192/379 (50%), Gaps = 38/379 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   ++     + + ++ F+   +Y +PR+ L+ENV
Sbjct: 423  LPLPGDVDVICGGPPCQGISGFNRFRNKENPLEDPKNKQLVVFMDVVNYLKPRFVLMENV 482

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQ R G++ AGA+G+ Q R R F+W A   + LP++P
Sbjct: 483  VDIVKFAGGYLGRYALGRLIGMNYQTRMGMMAAGAYGLPQFRMRVFMWGARFEEVLPQYP 542

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVR----DTIGDLPAVGNGASKTI 1384
             P H      ++ ++   ++ + V +   G  F  +  +    D I DLP V N  ++  
Sbjct: 543  LPTHDVI---IRGVIPLEFEMNTV-AYDEGHKFDELETKLLLADAISDLPPVTNDEARDE 598

Query: 1385 MEYQNDPVSWFQK--RIRGNMAV-------------LTDHISKEMNELNLIRCQKIPKRP 1429
            M Y   P + FQ+  R+R N  +             L DH   E+N  +  R  +IPK  
Sbjct: 599  MPYGKAPQTEFQRFIRLRKNEMLGTSPSESNPSGNKLYDHRPLELNADDYQRVCQIPKTK 658

Query: 1430 GADWHDLP------DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-----LFGRLDWEGN 1478
            GA++ DLP      D KV+         +P   P        + G      FGRL W+  
Sbjct: 659  GANFRDLPGVLVGADNKVEWDPNVERIYLPSGKPLVPDYAMSFVGGSSSKPFGRLWWDET 718

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             PT +T  +P  +V    HP+QDR+L++RE AR QGFPD YQ  G ++ ++ Q+GNAV  
Sbjct: 719  VPTVVTRAEPHNQV--ILHPEQDRVLSIRENARLQGFPDYYQLRGPVKERYIQVGNAVAV 776

Query: 1539 TLAFALGRKLKEAVESKRS 1557
             +A ALG  L  A +   S
Sbjct: 777  PVARALGYALGLAAQGSVS 795



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEA 1158
            E+  E   Q      + +  LD+++GCG +S GL    + SG++  T+WAI+    A E+
Sbjct: 187  ENNSEEVSQARERSLSEMTLLDLYSGCGAMSSGLCLGAKMSGVNLVTRWAIDINAYACES 246

Query: 1159 FKLNHPES 1166
             +LNHPE+
Sbjct: 247  VRLNHPET 254


>gi|68655470|emb|CAJ01708.1| chromomethylase 1 [Hordeum vulgare subsp. vulgare]
          Length = 735

 Score =  210 bits (534), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 192/380 (50%), Gaps = 40/380 (10%)

Query: 1209 NNLPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLE 1266
            N LP PGQVD I GGPPCQG SG NRF    +     + + ++ ++    Y QP++ L+E
Sbjct: 323  NILPQPGQVDVICGGPPCQGISGFNRFRNRDNPLQDEKNQQMVTYMDIVSYLQPKFVLME 382

Query: 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
            NV + + F  G   R  L+ L+ + YQ R G++ AG +G+ Q R R F+W + P   LP+
Sbjct: 383  NVVDILKFADGYLGRYALSRLVSLNYQARLGMMVAGCYGLPQFRMRVFLWGSLPTMVLPK 442

Query: 1327 WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF--RAMTVRDTIGDLPAVGNGASKTI 1384
            +P P H      ++    + +  S V       P   +A+ + D I DLP V N     +
Sbjct: 443  YPLPTHDVV---VRGGAPNAFSQSIVAYDETQRPILKKALLLGDAISDLPKVDNYQPHEV 499

Query: 1385 MEYQNDPVSWFQKRIRGNM----------------AVLTDHISKEMNELNLIRCQKIPKR 1428
            +EY+  P + FQ+ IR +                   L DH    +N+ +  R Q+IP +
Sbjct: 500  IEYRGQPKTEFQRYIRLSRKDMLDYSFGDDTCPEEGKLLDHQPLRLNQDDYDRVQQIPIK 559

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKRHNQWKG--LFGRLDW 1475
             GA+  DLP   VK+    +V+  P             +P+ A    + +    FGRL W
Sbjct: 560  KGANSRDLP--GVKVGANNIVEWDPEVERVYLKSGKPLVPDYAMSFIKGRSPKPFGRLWW 617

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +T  +P  ++    HP+Q R+LTVRE AR QGFPD Y+ +G ++ K+ Q+GNA
Sbjct: 618  DETVPTVVTRAEPHNQI--ILHPNQGRVLTVRENARLQGFPDYYRMNGPMKEKYIQVGNA 675

Query: 1536 VPPTLAFALGRKLKEAVESK 1555
            V   +A ALG  L  A + +
Sbjct: 676  VAVPVARALGYSLGRAYQGE 695


>gi|242077178|ref|XP_002448525.1| hypothetical protein SORBIDRAFT_06g028430 [Sorghum bicolor]
 gi|241939708|gb|EES12853.1| hypothetical protein SORBIDRAFT_06g028430 [Sorghum bicolor]
          Length = 913

 Score =  209 bits (532), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 190/378 (50%), Gaps = 48/378 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF          + + ++ F+    Y +P+Y L+ENV
Sbjct: 504  LPLPGDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 563

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P
Sbjct: 564  VDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYP 623

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF--RAMTVRDTIGDLPAVGNGASKTIME 1386
             P +      ++    + +    V       P   +A+ + D I DLP V N   K +ME
Sbjct: 624  LPTYDVV---VRGNTPNAFSQCMVAYDEKQKPHLKKALLLGDAISDLPKVENHQPKEVME 680

Query: 1387 YQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRPG 1430
            Y   P + FQ+ IR                 +   L DH    +N  +  R Q+IP + G
Sbjct: 681  YGGSPKTEFQRYIRLSRKDMLDWSFGEEAGPDKGKLLDHQPLRLNNDDYERVQQIPVKKG 740

Query: 1431 ADWHDL--------------PD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGRL 1473
            A++ DL              P+ E+VKLS+G+ +      +P+ A    + K L  FGRL
Sbjct: 741  ANFRDLKGVKVGANNIVEWDPEIERVKLSSGKPL------VPDYAMSFIKGKSLKPFGRL 794

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             W+   PT +T  +P  ++    HP Q R+LT+RE AR QGFPD Y+  G I+ K+ Q+G
Sbjct: 795  WWDETVPTVVTRAEPHNQI--ILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVG 852

Query: 1534 NAVPPTLAFALGRKLKEA 1551
            NAV   +A ALG  L +A
Sbjct: 853  NAVAVPVARALGYCLGQA 870



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 26/221 (11%)

Query: 998  RRFFRPDDISAEK-------AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D             +  D R V+ SEE +   ++ I  K ++   +  P  + 
Sbjct: 224  RWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMDP 281

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
             A  Q I  C+  +D S        A+I     +G   SE AS         G    +V+
Sbjct: 282  KAKAQLIEHCDLYYDMSYSVAYSTFANIS--SENGQSGSETAS---------GISSDDVD 330

Query: 1111 KQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHP 1164
             +  +S     ATL D+++GCGG+S GL      SG+   T+WA++    A ++ K NHP
Sbjct: 331  LEAPSSMPERTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHP 390

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDE 1205
            ++ +     +  L  + E     E  V     + LA S D+
Sbjct: 391  QTEVRNEKADEFLALLKEWAVLCEKYVHQDVDSNLAGSEDQ 431


>gi|388857258|emb|CCF49100.1| related to Cytosine-specific methyltransferase [Ustilago hordei]
          Length = 767

 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 222/481 (46%), Gaps = 88/481 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L+ ++I  G GGLS GL  SG   TK+AI+ +E +   FK +HP + +            
Sbjct: 319  LSAMEIMCGAGGLSLGLDLSGACETKFAIDMDEDSIRTFKAHHPSATVF----------- 367

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
               CGDA D +     A L     E +    P PG++D I+ GPPCQGFS  NR      
Sbjct: 368  ---CGDAGDAL---RRAMLGLRSQEGL--RFPCPGEIDMISAGPPCQGFSRKNRHAHREA 419

Query: 1241 SKVQCE--MILAFLSFADYFQPRYFLLENVRNFVSFNKGQ----TFRLTLASLLEMGYQV 1294
            ++      ++ + L + DY +P+YF++ENV  F     G       +L +  L++MGY V
Sbjct: 420  AEKDSRNLLVCSVLGWVDYLRPKYFVMENVEGFTMSRLGGREQGMVKLVMRCLMKMGYAV 479

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA-PELKIMLSDNYQ--YSA 1351
              G  ++GAFG  QSRKR  + A+    TLP  P+P H F   P    +  D  +  Y++
Sbjct: 480  TCGYAQSGAFGCPQSRKRFLLLASKDEVTLPNLPQPTHEFLGRPAHTFLWEDGSETTYNS 539

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAV-------------------------------GNGA 1380
              ST  GA   A+T  D I DLP                                 G   
Sbjct: 540  A-STLVGATLPAVTASDAISDLPVFDWKDPHVTYLGSDAIEVQRALQGIPQLVVKQGRPT 598

Query: 1381 SKTIMEYQNDPVSWFQKRIR---GNMAV-LTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436
                  Y++ P++ +Q+R+R   G  A  LT H +   + L + R   +   PGA++   
Sbjct: 599  GPEETSYRSQPLNSYQERMRVLAGETACSLTQHQTPGYHALAVERVVNVALYPGANFESW 658

Query: 1437 PDEKVK----LSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKV 1492
             +  VK    L T +  D            H +++    R+D +G F   +T    M   
Sbjct: 659  SEPGVKKPALLGTDRYTD-----------EHFRYE----RVDSDGYFKVLMTK---MTTQ 700

Query: 1493 GMCFHPDQDRILTVRECARSQGFPDSYQFH--GSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            G   HP Q R+LTVRECAR+QGFPD   FH   ++Q  +RQIGNAVP  L+ A+G+ L  
Sbjct: 701  GSMLHPTQRRLLTVRECARAQGFPDWVHFHTDANLQSAYRQIGNAVPVPLSQAIGKSLTA 760

Query: 1551 A 1551
            A
Sbjct: 761  A 761


>gi|240979618|ref|XP_002403217.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
 gi|215491328|gb|EEC00969.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
          Length = 230

 Score =  208 bits (530), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/218 (44%), Positives = 130/218 (59%), Gaps = 41/218 (18%)

Query: 1372 DLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            DLP + NGA +  + Y  + ++ FQ+ +RG  AVL DH+ KEM  L   R + IP  PG+
Sbjct: 3    DLPEIRNGAKREEIPYGAEALTPFQRTLRGGGAVLRDHVCKEMAPLVEARMRHIPLEPGS 62

Query: 1432 DWHDLPDEKVKLSTG-----------------------------------------QVVD 1450
            DW DLP+  V+LS G                                         Q   
Sbjct: 63   DWRDLPNAVVRLSDGVTFTRKLRYTHHDRKNGKSSTGALRGVCPCAEDAPCDPVCRQDNT 122

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            LIPWCLP+T  RHN W GL+GRLDW+G F T++T+P+PMGK G   HP+Q R+++VRECA
Sbjct: 123  LIPWCLPHTGNRHNHWAGLYGRLDWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECA 182

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            RSQGFPD+Y+F G+I  +HRQ+GNAVPP LA A+GR++
Sbjct: 183  RSQGFPDTYRFFGTILDRHRQVGNAVPPPLARAIGREI 220


>gi|411012959|gb|AFV99136.1| CMT-type cytosine DNA-methyltransferase 3b [Malus x domestica]
          Length = 1096

 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 193/380 (50%), Gaps = 45/380 (11%)

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLL 1265
            +  LPLPG VD + GGPPCQG SG NRF   +S  +  + + +  ++    Y  P++ L+
Sbjct: 567  LKKLPLPGDVDVVCGGPPCQGVSGFNRFRNTESPLADDKNQQLEVYMDIVRYLXPKFVLM 626

Query: 1266 ENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP 1325
            ENV + + F  G   R  L  L++M YQVR G++ AGA+G+ Q R R F+W A P + LP
Sbjct: 627  ENVVDILKFADGFLGRYALGRLVDMNYQVRMGMMAAGAYGLPQFRMRVFLWGARPTEILP 686

Query: 1326 EWPEPMH-VFAAPELKIMLSDN-YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKT 1383
            ++P P H V +          N   Y     T  G   +++ + D I DLPAV N   + 
Sbjct: 687  QYPLPTHDVVSRGVTPTQFEGNAVAYDEGHQTQLG---KSLFLDDAISDLPAVANNEERD 743

Query: 1384 IMEYQNDPVSWFQKRIRGN-------------MAVLTDHISKEMNELNLIRCQKIPKRPG 1430
             M Y   P + FQ+ IR +               VL DH   ++N  +  R  ++PKR G
Sbjct: 744  EMPYGVAPKTEFQRLIRLSKEYLMGTSKDNSIQNVLYDHRPLQLNPDDYARVCEVPKRKG 803

Query: 1431 ADWHDLPDEKVK---------------LSTGQVVDLIPWCLPNTAKR--HNQWKGLFGRL 1473
            A + DLP  +V+               L++G+ +      +P+ A    +      F RL
Sbjct: 804  ACFRDLPGVRVRGDNKVEWDPEVPRVYLASGKPL------IPDYAMSFVNGSSSKPFARL 857

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             W+   PT +T  +P  +  M  HP+QDR+LT+RE AR QGF D Y+  G I+ ++ Q+G
Sbjct: 858  WWDETVPTVVTRAEPHNQAIM--HPEQDRVLTIRENARLQGFXDFYKLSGPIKERYMQVG 915

Query: 1534 NAVPPTLAFALGRKLKEAVE 1553
            NAV   +A ALG  L  A++
Sbjct: 916  NAVAVPVARALGYALGLALK 935



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 20/131 (15%)

Query: 1041 KKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKC 1100
            K   IP CN        ++C+  +     +   L A       +GS DS  +   +   C
Sbjct: 320  KSKSIPVCN--------YYCDTKYLLPYSTFVNLXAE---NMQTGSDDSTISV--EDDVC 366

Query: 1101 IEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPA 1155
            ++ E  ++ +   G   ++ +  LD+++GCG +S GL      +     T+WA++Y + A
Sbjct: 367  LDSE--VDSKLPNGERAKSEVRLLDLYSGCGAMSTGLCLGAHLANVNLVTRWAVDYNKYA 424

Query: 1156 GEAFKLNHPES 1166
             ++   NHPE+
Sbjct: 425  CKSLAQNHPET 435


>gi|409045787|gb|EKM55267.1| hypothetical protein PHACADRAFT_184079 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1376

 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 223/866 (25%), Positives = 343/866 (39%), Gaps = 185/866 (21%)

Query: 788  YMFEA--TGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRS 845
            YM+E   T G ++ H      G+  +L  TA+   +FL ++C  + L  I   V + I  
Sbjct: 575  YMYEEPNTIGYQMAHVQYYSHGAEIILKETAHPFGLFLLDECNSIHLDSIYGKVNLRIL- 633

Query: 846  VPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVG 905
                             D    EER         Y   + W    A F            
Sbjct: 634  -------------GPTEDEPLIEERDN------LYFTGVCWDANNAIF--------FDRT 666

Query: 906  SCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAE----GETFK 961
            S      +  + + + + +H     V+G   Y V D+VYI       DK +     +  +
Sbjct: 667  SEEEERARLLQGDDDGWAIHDGI-LVHGGVTYHVDDFVYIRQE---LDKTDVYLIAQIIE 722

Query: 962  AGRN---------VGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAY 1012
              R+         V L+ Y  C L    + +   RAE    +   RR FR D        
Sbjct: 723  VHRSTHLEKLYHSVDLRVYQRCDL----ILRAETRAEFGLWETDERRLFRSDT------- 771

Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFF-CEHLHDPSKGSL 1071
                    Y +   + ++E  A        +D    N      H +  C+   D  + S 
Sbjct: 772  --------YVDGVDVRYIEGKAFVVHRSSLSDDELENWCTHDDHFYVDCKAKSDKPRSSN 823

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            +  P   K             S R   KC+    E   E+Q      + L  L++FAG G
Sbjct: 824  EFEPLSRK-------------SFRTCHKCVGLRKEQLTEQQELMDSHSPLRGLELFAGAG 870

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME--KCGDAED 1189
            GLS G  +SG   T WA+E    A   ++ NHP + +   + N  LR  +E  +  D E 
Sbjct: 871  GLSTGFDESGYVKTMWAVELGASACLTYEENHPYAQVYHGSVNTTLRHAIEAYEGQDPEP 930

Query: 1190 CVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL 1249
             +S     EL           +P PG+VDFI GGPPCQGFS MN  +  T    +  ++ 
Sbjct: 931  LISEELGQELPP---------MPRPGEVDFIYGGPPCQGFSRMN--HSRTVDDYRNTLVC 979

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQT----------------FRLTLASLLEMGYQ 1293
              LS+ +++ P++F+LENV   +      T                 +L L +L  +GYQ
Sbjct: 980  NMLSYVEFYHPKFFMLENVEGILYHPLAATQSGPGRKMEGGVRMGVVKLILRTLTSLGYQ 1039

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQYSAV 1352
            V F +L+AG +G  QSR R     A     LP +P P H  A    +I +++ N    AV
Sbjct: 1040 VHFKLLQAGQYGAPQSRLRVIFLGAQRGLPLPSFPIPTHCTADDVQQIKLVTGNLLRPAV 1099

Query: 1353 R-------------STANGAPFRAMTVRDTIGDLPAVG--NGASKT----IME------- 1386
            R             +    AP   ++V D I DLP     N A  T    I E       
Sbjct: 1100 RIIPFEDKDVVNRKAWLQFAPHLRVSVEDAISDLPKFDWINPALITDPDNIYEINKRKAE 1159

Query: 1387 ---------------------------YQNDPVSWFQKRIRGNMAV---LTDHISKEMNE 1416
                                       Y ++P+S +QK +R  +     ++   +K   E
Sbjct: 1160 GIHRFDALYISESTHGSPYAGYVNPEPYTSEPLSRYQKWMRRGVDPDEGVSYQYTKRYKE 1219

Query: 1417 LNLIRC-QKIPKRPGADWHDLPDE---KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             ++I C   +P +  A+  +LP+E   K   + GQ+          + K   ++  ++ R
Sbjct: 1220 -SVIECVVNVPLKENANHINLPNELKNKRWYTGGQI----------SGKPKPEYLTIYAR 1268

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF----HGSIQHK 1528
            ++ + +F T++T   P  K G   HP Q R+LT+RE AR+QGFPD  +F      + + +
Sbjct: 1269 VNGKWHFQTALTSANPNAKGGRLLHPTQKRVLTIREFARAQGFPDQQKFLSIKENAFEDQ 1328

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAVES 1554
             RQ+GNAVP  LAFALG+ +   + S
Sbjct: 1329 QRQVGNAVPVPLAFALGKSIGAVLTS 1354



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 417 DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476
           D +P RML D+S+Y+    L  L       C D + T+  SG +    GS    D DSS+
Sbjct: 212 DDVPMRMLKDFSIYDFSFNL-PLVYFDRNLCLDTNRTLGASGYVEPYMGS----DNDSSE 266

Query: 477 CTSGVSGAQDAGGFPIYLSSIKEWMIE-FGSSMIF-----ISIRTDLAWYRLGKPSKQYA 530
             S     Q      I +S+IKE  +       +F     + IRTD AWY L  PS QYA
Sbjct: 267 EASADGDRQLQR---ICISNIKEICVHAVCEKPVFELDPNVYIRTDYAWYILDTPSPQYA 323

Query: 531 PWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIK 566
           P++       R+   +IT       ++   F D +K
Sbjct: 324 PFWTEFSIKERIFYELITAALGDHGITYEEFVDHLK 359


>gi|224071435|ref|XP_002303458.1| DNA methyltransferase [Populus trichocarpa]
 gi|222840890|gb|EEE78437.1| DNA methyltransferase [Populus trichocarpa]
          Length = 729

 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 190/378 (50%), Gaps = 42/378 (11%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG  D I GGPPCQG SG NR+    S  +  +   I+ F+    + +P+Y L+ENV
Sbjct: 344  LPLPGDADVICGGPPCQGISGYNRYRNVDSPLADERNIQIVVFMDIVQFLKPKYVLMENV 403

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASP-------H 1321
             + + F+K    R  L+ L+ M YQ R G + AG +G+ Q R R F+W A P       H
Sbjct: 404  VDILRFDKASFARYALSRLVHMKYQARLGTVAAGCYGLPQFRLRVFLWGAHPKEASFIIH 463

Query: 1322 DTLPEWPEPMH-----VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV 1376
              LP++P P H      +  PE +   +  Y     R        +A  +RD I DLP V
Sbjct: 464  GKLPQFPLPSHDVIVRYWPPPEFE-RNTVAYDEDQPRDDLE----KATVLRDAISDLPDV 518

Query: 1377 GNGASKTIMEYQNDPVSWFQKRIR----GNMA------VLTDHISKEMNELNLIRCQKIP 1426
             +  ++  M Y   P + FQ+ IR    GN++      +L DH    + E +  R  +IP
Sbjct: 519  TSHETREEMAYDKPPETDFQQFIRSTRNGNLSGTRMINLLYDHRPYSLTEEDFARVCQIP 578

Query: 1427 KRPGADWHDLP------DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-----LFGRLDW 1475
            K+ GA++ DLP      D   +    +   L+P   P        ++G      + RL W
Sbjct: 579  KKKGANFRDLPGVVVGADNVARRDPTEEQMLLPSGKPLVPDFALNFEGGKSRRPYARLWW 638

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +    T +T P    +  M  HP+QDR+LT+RECAR QGFPD Y+F G+++ ++RQIGNA
Sbjct: 639  DETVSTVVTFPDLHSQAVM--HPEQDRVLTIRECARLQGFPDYYRFCGTVKQRYRQIGNA 696

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            V   +  ALG  L  A +
Sbjct: 697  VAVPVGRALGFTLGMAFQ 714



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 1103 GEDELEVEKQGG-ASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAG 1156
            G D++ +E      S +  L  LD+F+GCGG+S GL      S     T+WA++ +E A 
Sbjct: 152  GTDDISMENMSTCGSYKAKLTLLDLFSGCGGMSTGLCLGAKVSCVDLVTRWALDSDESAC 211

Query: 1157 EAFKLNHPES 1166
            ++ KLNHPE+
Sbjct: 212  QSLKLNHPET 221


>gi|168034417|ref|XP_001769709.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679058|gb|EDQ65510.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 700

 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 196/376 (52%), Gaps = 36/376 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG  D I GGPPCQG SG NRF       +  + + ++ ++   D+ +PR+F++ENV
Sbjct: 312  LPLPGDCDVICGGPPCQGASGFNRFRNRVDPLADPRNKQMVVYMDIVDFLRPRFFIMENV 371

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  LA  + M YQ + GI+ AG +G+ Q R R F+W A+  + LP +P
Sbjct: 372  VDILKFCDGILGRYALARAVGMNYQSKVGIMVAGCYGMPQFRARCFLWGAASDEILPPYP 431

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAP---FRAMTVRDTIGDLPAVGNGASKTIM 1385
             P H      ++      ++   V    N  P      + ++D + DLPAVGN  SK  +
Sbjct: 432  MPTHKVI---VRGGFPQKWERCLVAYEENKQPEWLQLPLVLKDALSDLPAVGNDQSKDDI 488

Query: 1386 EYQNDPVSWFQKRIR----GNM-------AVLTDHISKEMNELNLIRCQKIPKRPGADWH 1434
             Y  +P   FQ  +R    G++       A+L DH    +N  +  R ++IPK+ GA++ 
Sbjct: 489  SYDEEPQCDFQHFLRLPKKGSLGPQQKKKAILPDHRPLCLNADDYERVKQIPKKKGANFR 548

Query: 1435 DLPDEKVKLSTGQVVDLI--PWCLPNTAK-----------RHNQWKGLFGRLDWEGNFPT 1481
            DL    +K + G  VD++  P  L  + K           R   +K  FGRL W+   PT
Sbjct: 549  DLKGIIIK-ADGVTVDVVREPRELLKSGKPLVPDYAISFIRGRSFKP-FGRLWWDETVPT 606

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             +T  +P  ++    HP+QDR+LT+RE AR QGF D Y+  G I+ ++ Q+GNAV   +A
Sbjct: 607  VVTRAEPHNQI--ILHPEQDRVLTIRENARLQGFSDYYKLFGPIKQRYMQVGNAVAVPVA 664

Query: 1542 FALGRKLKEAVESKRS 1557
             ALG  L ++   K S
Sbjct: 665  TALGYVLGQSFLRKVS 680



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 52/235 (22%)

Query: 949  HFTWDKAEGETFKAGRNV----GLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPD 1004
            H+   + EG+ +K G  V    GL+   + ++ E          E KS     + FFR  
Sbjct: 1    HYRQAEVEGKLYKLGDCVHVHSGLEDPFIGRITEFY------EKEDKSPWFHAQWFFRSY 54

Query: 1005 DISAEKAYCSDIREVYYSE-----ETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFF 1059
            D  +      D +++YYSE     E H+I  +    +   + ++D      PA       
Sbjct: 55   DTVSRN---HDPKKIYYSEVADENELHVIVGKVSVIRIASKDRSDRSPIKTPA------- 104

Query: 1060 CEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQEN 1119
            C++  D  KG + Q      L                  K + G      E     S  N
Sbjct: 105  CDYYFD--KGYMFQYGTFYTL-----------------PKDLPGHGSKSTESDNSCSDSN 145

Query: 1120 H---LATLDIFAGCGGLSEG----LQQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
                   LD++ GCG +S G    +  +GI+  TKWA++  E A  + K NHPE+
Sbjct: 146  DKKDFYLLDLYCGCGAMSTGICLGMNLAGINLVTKWAVDLNEFACMSLKYNHPET 200


>gi|413919506|gb|AFW59438.1| DNA (cytosine-5)-methyltransferase 1 [Zea mays]
          Length = 915

 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 194/383 (50%), Gaps = 58/383 (15%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NR+          + + ++ F+    Y +P+Y L+ENV
Sbjct: 505  LPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 564

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P
Sbjct: 565  VDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYP 624

Query: 1329 EPMHVF----AAPEL--KIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P +       AP    + M++ D  Q  +++        +A+ + D I DLP V N   
Sbjct: 625  LPTYDVVVRGGAPNAFSQCMVAYDETQKPSLK--------KALLLGDAISDLPKVQNHQP 676

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY   P + FQ+ IR                 +   L DH    +N  +  R Q+I
Sbjct: 677  NDVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQI 736

Query: 1426 PKRPGADWHDL--------------PD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL- 1469
            P + GA++ DL              P+ E+VKLS+G+ +      +P+ A    + K L 
Sbjct: 737  PVKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPL------VPDYAMSFIKGKSLK 790

Query: 1470 -FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
             FGRL W+   PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K
Sbjct: 791  PFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEK 848

Query: 1529 HRQIGNAVPPTLAFALGRKLKEA 1551
            + Q+GNAV   +A ALG  L +A
Sbjct: 849  YIQVGNAVAVPVARALGYCLGQA 871



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 28/183 (15%)

Query: 998  RRFFRPDD--------ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
            R FFR +D        IS +  +  D R V+ SEE +   ++ I  K ++   +  P  +
Sbjct: 226  RWFFRAEDTVINSLVSISVD-GHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMD 282

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
              A  Q I  C+  +D S        A+I     +G  DS+ AS         G    +V
Sbjct: 283  PKAKAQLIESCDLYYDMSYSVAYSTFANIS--SENGQSDSDTAS---------GISSDDV 331

Query: 1110 EKQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNH 1163
            + +  +S     ATL D+++GCGG+S GL      SG+   T+WA+++   A ++ K NH
Sbjct: 332  DLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 391

Query: 1164 PES 1166
            P++
Sbjct: 392  PQT 394


>gi|162463785|ref|NP_001104978.1| DNA (cytosine-5)-methyltransferase 1 [Zea mays]
 gi|75168496|sp|Q9AXT8.1|CMT1_MAIZE RecName: Full=DNA (cytosine-5)-methyltransferase 1; AltName:
            Full=Chromomethylase 1; AltName: Full=DNA cytosine
            methyltransferase MET2a; AltName: Full=Zea
            methyltransferase2; Short=Zmet2
 gi|13021690|gb|AAK11516.1|AF243043_1 DNA cytosine methyltransferase MET2a [Zea mays]
 gi|260749135|gb|ACX48824.1| chromomethylase [Zea mays]
          Length = 912

 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 194/383 (50%), Gaps = 58/383 (15%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NR+          + + ++ F+    Y +P+Y L+ENV
Sbjct: 502  LPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 561

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P
Sbjct: 562  VDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYP 621

Query: 1329 EPMHVF----AAPEL--KIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P +       AP    + M++ D  Q  +++        +A+ + D I DLP V N   
Sbjct: 622  LPTYDVVVRGGAPNAFSQCMVAYDETQKPSLK--------KALLLGDAISDLPKVQNHQP 673

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY   P + FQ+ IR                 +   L DH    +N  +  R Q+I
Sbjct: 674  NDVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQI 733

Query: 1426 PKRPGADWHDL--------------PD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL- 1469
            P + GA++ DL              P+ E+VKLS+G+ +      +P+ A    + K L 
Sbjct: 734  PVKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPL------VPDYAMSFIKGKSLK 787

Query: 1470 -FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
             FGRL W+   PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K
Sbjct: 788  PFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEK 845

Query: 1529 HRQIGNAVPPTLAFALGRKLKEA 1551
            + Q+GNAV   +A ALG  L +A
Sbjct: 846  YIQVGNAVAVPVARALGYCLGQA 868



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 28/183 (15%)

Query: 998  RRFFRPDD--------ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
            R FFR +D        IS +  +  D R V+ SEE +   ++ I  K ++   +  P  +
Sbjct: 223  RWFFRAEDTVINSLVSISVD-GHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMD 279

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
              A  Q I  C+  +D S        A+I     +G   S+ AS         G    +V
Sbjct: 280  PKAKAQLIESCDLYYDMSYSVAYSTFANIS--SENGQSGSDTAS---------GISSDDV 328

Query: 1110 EKQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNH 1163
            + +  +S     ATL D+++GCGG+S GL      SG+   T+WA+++   A ++ K NH
Sbjct: 329  DLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 388

Query: 1164 PES 1166
            P++
Sbjct: 389  PQT 391


>gi|409107274|pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2
            Peptide And Sah
 gi|409107275|pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2
            Peptide And Sah
 gi|409107277|pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2
            Peptide And Sah
 gi|409107278|pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2
            Peptide And Sah
          Length = 784

 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 194/383 (50%), Gaps = 58/383 (15%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NR+          + + ++ F+    Y +P+Y L+ENV
Sbjct: 374  LPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 433

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P
Sbjct: 434  VDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYP 493

Query: 1329 EPMHVF----AAPEL--KIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P +       AP    + M++ D  Q  +++        +A+ + D I DLP V N   
Sbjct: 494  LPTYDVVVRGGAPNAFSQCMVAYDETQKPSLK--------KALLLGDAISDLPKVQNHQP 545

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY   P + FQ+ IR                 +   L DH    +N  +  R Q+I
Sbjct: 546  NDVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQI 605

Query: 1426 PKRPGADWHDL--------------PD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL- 1469
            P + GA++ DL              P+ E+VKLS+G+ +      +P+ A    + K L 
Sbjct: 606  PVKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPL------VPDYAMSFIKGKSLK 659

Query: 1470 -FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
             FGRL W+   PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K
Sbjct: 660  PFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEK 717

Query: 1529 HRQIGNAVPPTLAFALGRKLKEA 1551
            + Q+GNAV   +A ALG  L +A
Sbjct: 718  YIQVGNAVAVPVARALGYCLGQA 740



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 28/183 (15%)

Query: 998  RRFFRPDD--------ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
            R FFR +D        IS +  +  D R V+ SEE +   ++ I  K ++   +  P  +
Sbjct: 95   RWFFRAEDTVINSLVSISVD-GHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMD 151

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
              A  Q I  C+  +D S        A+I     +G   S+ AS         G    +V
Sbjct: 152  PKAKAQLIESCDLYYDMSYSVAYSTFANIS--SENGQSGSDTAS---------GISSDDV 200

Query: 1110 EKQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNH 1163
            + +  +S     ATL D+++GCGG+S GL      SG+   T+WA+++   A ++ K NH
Sbjct: 201  DLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260

Query: 1164 PES 1166
            P++
Sbjct: 261  PQT 263


>gi|297739809|emb|CBI29991.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 183/368 (49%), Gaps = 40/368 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VDFI GGPPCQG SG NRF   ++     +   ++ F+   +Y +P+Y L+ENV
Sbjct: 428  LPLPGDVDFICGGPPCQGVSGFNRFRNTEAPLDDPKNHQLVVFMDIVNYLKPKYVLMENV 487

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  +  L+ M YQ R G++ AG++GV Q R R F+W A P + LP +P
Sbjct: 488  VDILKFAGGFLGRYAMGRLVSMNYQARLGMMAAGSYGVPQYRMRVFLWGAHPMEKLPPYP 547

Query: 1329 EPMHVF----AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
             P H        P     ++  Y  S +         +A+ + D I DLP V N   +  
Sbjct: 548  LPTHDVIGRGVVPNEFEEITVGYDKSELCKLE-----KALFLGDAISDLPPVTNYNGQDE 602

Query: 1385 MEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            M Y     + FQ+ IR                    +L DH   ++NE +  R  +IPK+
Sbjct: 603  MPYNKAAHTEFQRYIRLRKHDMVYCSDAEKDASEPPMLYDHRPLQLNEDDNERVCRIPKK 662

Query: 1429 PGADWHDLP------DEKVKLSTGQVVDLIPW---CLPNTAKRHNQWKGL--FGRLDWEG 1477
             GA++ DLP      D +V+        L+P     +P+ A    + K    F RL W+ 
Sbjct: 663  KGANFRDLPGVMVGSDNRVEWDPSMERVLLPSGKPLVPDYAMSFVRGKSTKPFARLWWDE 722

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T +T  +P  +     HP QDR+LT+RE AR QGFPD Y+  G ++ ++ Q+GNAV 
Sbjct: 723  IVATVVTRAEPHNQA--IIHPTQDRVLTIRENARFQGFPDCYKLCGPVKERYIQVGNAVA 780

Query: 1538 PTLAFALG 1545
              +A ALG
Sbjct: 781  VPVALALG 788



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 39/190 (20%)

Query: 1000 FFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV----------RKKNDIPAC 1048
            FFR +D +  + A+  D + V+YS+      ++ I  K E+           K+  IP C
Sbjct: 129  FFRAEDTVIKDHAHLVDQKRVFYSDMRDDNPLDCIVSKVEIVQVAPNVDLAEKEKTIPPC 188

Query: 1049 N----APAIFQHIFFCEHLHDPSKGSLKQ---LPAHIKLRYSSGSLDSEAASRRKKGKCI 1101
            +         +H+ F   L + S+    +   + + I L  ++  ++S            
Sbjct: 189  DLYYDMSYSLKHLTFANLLTENSRTESDESSTISSEIGLNSTTDGINSAI---------- 238

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAG 1156
             GE   +V K  G+     +  LD+++GCG +S GL      SG+   T+WA++    A 
Sbjct: 239  -GESS-QVHKFQGSG----MTLLDLYSGCGAMSTGLCLGASLSGLKLVTRWAVDINPHAC 292

Query: 1157 EAFKLNHPES 1166
            E+ KLNHPE+
Sbjct: 293  ESLKLNHPET 302


>gi|225441510|ref|XP_002275932.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Vitis vinifera]
          Length = 829

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 183/368 (49%), Gaps = 40/368 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VDFI GGPPCQG SG NRF   ++     +   ++ F+   +Y +P+Y L+ENV
Sbjct: 430  LPLPGDVDFICGGPPCQGVSGFNRFRNTEAPLDDPKNHQLVVFMDIVNYLKPKYVLMENV 489

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  +  L+ M YQ R G++ AG++GV Q R R F+W A P + LP +P
Sbjct: 490  VDILKFAGGFLGRYAMGRLVSMNYQARLGMMAAGSYGVPQYRMRVFLWGAHPMEKLPPYP 549

Query: 1329 EPMHVF----AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
             P H        P     ++  Y  S +         +A+ + D I DLP V N   +  
Sbjct: 550  LPTHDVIGRGVVPNEFEEITVGYDKSELCKLE-----KALFLGDAISDLPPVTNYNGQDE 604

Query: 1385 MEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKR 1428
            M Y     + FQ+ IR                    +L DH   ++NE +  R  +IPK+
Sbjct: 605  MPYNKAAHTEFQRYIRLRKHDMVYCSDAEKDASEPPMLYDHRPLQLNEDDNERVCRIPKK 664

Query: 1429 PGADWHDLP------DEKVKLSTGQVVDLIPW---CLPNTAKRHNQWKGL--FGRLDWEG 1477
             GA++ DLP      D +V+        L+P     +P+ A    + K    F RL W+ 
Sbjct: 665  KGANFRDLPGVMVGSDNRVEWDPSMERVLLPSGKPLVPDYAMSFVRGKSTKPFARLWWDE 724

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T +T  +P  +     HP QDR+LT+RE AR QGFPD Y+  G ++ ++ Q+GNAV 
Sbjct: 725  IVATVVTRAEPHNQA--IIHPTQDRVLTIRENARFQGFPDCYKLCGPVKERYIQVGNAVA 782

Query: 1538 PTLAFALG 1545
              +A ALG
Sbjct: 783  VPVALALG 790



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 39/190 (20%)

Query: 1000 FFRPDD-ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEV----------RKKNDIPAC 1048
            FFR +D +  + A+  D + V+YS+      ++ I  K E+           K+  IP C
Sbjct: 131  FFRAEDTVIKDHAHLVDQKRVFYSDMRDDNPLDCIVSKVEIVQVAPNVDLAEKEKTIPPC 190

Query: 1049 N----APAIFQHIFFCEHLHDPSKGSLKQ---LPAHIKLRYSSGSLDSEAASRRKKGKCI 1101
            +         +H+ F   L + S+    +   + + I L  ++  ++S            
Sbjct: 191  DLYYDMSYSLKHLTFANLLTENSRTESDESSTISSEIGLNSTTDGINSAI---------- 240

Query: 1102 EGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAG 1156
             GE   +V K  G+     +  LD+++GCG +S GL      SG+   T+WA++    A 
Sbjct: 241  -GESS-QVHKFQGSG----MTLLDLYSGCGAMSTGLCLGASLSGLKLVTRWAVDINPHAC 294

Query: 1157 EAFKLNHPES 1166
            E+ KLNHPE+
Sbjct: 295  ESLKLNHPET 304


>gi|115480860|ref|NP_001064023.1| Os10g0104900 [Oryza sativa Japonica Group]
 gi|113638632|dbj|BAF25937.1| Os10g0104900, partial [Oryza sativa Japonica Group]
          Length = 406

 Score =  204 bits (518), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 192/381 (50%), Gaps = 58/381 (15%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV 1272
            G VD I GGPPCQG SG NRF   +      + + ++ F+    Y +P+Y L+ENV + +
Sbjct: 1    GDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDIL 60

Query: 1273 SFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH 1332
             F  G   R  L+ L+ M YQ R G++ AG +G+ Q R R F+W A P   LP++P P H
Sbjct: 61   KFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYPLPTH 120

Query: 1333 VF----AAPEL---KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM 1385
                   AP      I+  D  Q   +++        A+ + D I DLP V N     +M
Sbjct: 121  NVVVRGGAPNAFSQSIVAYDETQKPTLKN--------ALLLGDAISDLPEVNNHQPNEVM 172

Query: 1386 EYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRP 1429
            EY + P + FQ+ IR                 ++  L DH   ++N+ +  R Q+IP + 
Sbjct: 173  EYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKK 232

Query: 1430 GADWHDL--------------PD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGR 1472
            GA++ DL              PD  +V LS+G+ +      +P+ A    + + L  FGR
Sbjct: 233  GANFRDLKGVRVGANNIVEWDPDVPRVYLSSGKPL------VPDYAMSFIKGRSLKPFGR 286

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT +T  +P  ++    HP+Q R+LTVRE AR QGFPD Y+  G I+ K+ Q+
Sbjct: 287  LWWDETVPTVVTRAEPHNQI--ILHPNQARVLTVRENARLQGFPDYYKMFGPIKEKYIQV 344

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAV   +A ALG  L  A +
Sbjct: 345  GNAVAVPVARALGYSLGLAYQ 365


>gi|357484051|ref|XP_003612312.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
 gi|355513647|gb|AES95270.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
          Length = 835

 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/393 (33%), Positives = 196/393 (49%), Gaps = 45/393 (11%)

Query: 1197 AELAASLDENVINN-----LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMIL 1249
            +E   ++ + VIN      LPLPGQ DFI GGPPCQG SG NRF    +     + + ++
Sbjct: 419  SECKDAMKDFVINGYKEKILPLPGQADFICGGPPCQGVSGFNRFRNKNAPLEDEKNKQLI 478

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
             +++  D+ +P+Y L+ENV + + F  G   R  +  L+ M YQ R G++ AG++G+ Q 
Sbjct: 479  VYMNIIDFLKPKYVLMENVVDILKFAGGFLGRYAVGRLVAMNYQARMGMMAAGSYGLPQF 538

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF-RAMTVRD 1368
            R R F+W A   + LP +P P H   +    ++ ++  + +   ST       +A+ +  
Sbjct: 539  RMRVFLWGALATEKLPSYPLPTHKVVS--RSVIPTEFEEITVAYSTNENCQLAKALNLEG 596

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR---------------GNMAVLTDHISKE 1413
             I DLP V N  S     Y   P + FQK IR                   +L DH   +
Sbjct: 597  AINDLPPVENDDSDDERSYGTTPRTDFQKYIRLQRSEMVNYSADSQSAPSGMLYDHRPLK 656

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPD--------------EKVKLSTGQVVDLIPWCLPNT 1459
            +N  +  R   IPK+ GA++ DL                E+V L +G+   L+P     T
Sbjct: 657  LNTDDYERVCHIPKKKGANFRDLKGVLVKENKVEWDPSVERVYLKSGK--PLVP-DYAMT 713

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
              R    K  FGRL W+    T +T  +P  +V    HP+QDR+L++RE AR QGFPD Y
Sbjct: 714  FVRGTSSKP-FGRLWWDEIVSTVVTRAEPHNQV--LLHPEQDRVLSIRENARLQGFPDCY 770

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            +  G ++ ++ Q+GNAV   +A ALG  L  A+
Sbjct: 771  KLCGPVKQRYMQVGNAVAVPVALALGYTLGLAI 803



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPESLM 1168
            LD+++GCG +S GL      SGI   TKWA++  + A E+ KLNHPE+ +
Sbjct: 268  LDLYSGCGAMSTGLCFGASISGIKLVTKWAVDINKYACESLKLNHPETYV 317


>gi|356495335|ref|XP_003516534.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max]
          Length = 834

 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 48/371 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG  +FI GGPPCQG SG NRF   ++     + + +L ++   D+ +P+Y L+ENV
Sbjct: 434  LPLPGDANFICGGPPCQGVSGFNRFRNAEAPLEDTKNKQLLVYMDIIDFLKPKYVLMENV 493

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+ G   R  +  L+ M YQ R G++ AG++G+ Q R R F+W A P + LP +P
Sbjct: 494  VDILKFSGGYLGRYAIGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGARPTEQLPPYP 553

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAV----RSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
             P H   +   +  +   ++   V    + T   A   A+ + D I DLP V N  ++  
Sbjct: 554  LPTHEVVS---RGFVPTEFEEITVAYDKKDTCQLA--GALLLDDAISDLPPVTNDENQDE 608

Query: 1385 MEYQNDPVSWFQKRIR-------GNMA--------VLTDHISKEMNELNLIRCQKIPKRP 1429
              Y     + FQ+ IR       G+MA        +L DH   ++N+ +  R  +IP++ 
Sbjct: 609  RNYGAPARTEFQRYIRLKKNEMVGSMATAQSTPRRILYDHRPLQLNKDDYDRVCQIPQKK 668

Query: 1430 GADWHDLPD--------------EKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLD 1474
            GA++ DLP               E+V L +G+   L+P + +  T  R    K  FGRL 
Sbjct: 669  GANFRDLPGVLVNGNKVEWDPSVERVMLDSGK--PLVPDYAM--TFVRGTSTKP-FGRLW 723

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+   PT +T  +P  +     HP Q+R+LT+RE AR QGFPD Y+  G ++ ++ Q+GN
Sbjct: 724  WDEIVPTVVTRAEPHNQA--ILHPRQNRVLTIRENARLQGFPDCYKLCGPVKERYIQVGN 781

Query: 1535 AVPPTLAFALG 1545
            AV   +A ALG
Sbjct: 782  AVAVPVALALG 792



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 1015 DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            D + V+ S+   +  ++ I  K ++ KKN  P+ +  +    + FC++ +D     +K  
Sbjct: 156  DKKRVFISDVKDVNPLDCIVSKVKIFKKN--PSVDLASKKAKLPFCDYYYD-----MKYT 208

Query: 1075 PAHIKL-RYSSGSLDSEAASRRKKGK----CIEGEDELEVEK-QGGASQENHLATLDIFA 1128
              ++      +G  DS+A+S          C+   +  + +  Q  +S  +    LD+++
Sbjct: 209  VPYLTFSNLVNGKNDSDASSTISSESGSIGCVNNANLAKRKTTQNNSSGSSQWTLLDLYS 268

Query: 1129 GCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            GCG +S GL      +GI   T WA++    A ++ KLNHPE+
Sbjct: 269  GCGAMSTGLCLGASLAGIKLVTMWAVDINAHACKSLKLNHPET 311


>gi|213498014|emb|CAS84142.1| chromomethylase [Nicotiana tomentosiformis]
          Length = 500

 Score =  203 bits (516), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 184/349 (52%), Gaps = 45/349 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V  I GGPPCQG SG NRF  ST      + + +  F+   ++  P++ L+ENV
Sbjct: 166  LPLPGEVQVICGGPPCQGVSGFNRFRNSTNPLGDSKNKQLETFMDIVEFLNPQFVLMENV 225

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + V F  G   R  L  L+ M YQ R G++ AGA+G+ Q R+R F+W A P + LP++P
Sbjct: 226  VDLVKFADGFLGRYALGRLVGMNYQARMGMMVAGAYGLPQFRRRVFMWGALPSEKLPQYP 285

Query: 1329 EPMHVFAAP-------ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P H            EL ++  D      ++        R + ++D I DLP V N   
Sbjct: 286  LPTHNVVVRGGMPKEFELNVVAYDEALKVELK--------RELFLKDAISDLPPVENDEP 337

Query: 1382 KTIMEYQNDPVSWFQKRIR----GNM-AVLTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436
               M Y ++P S FQ  IR    G + +VL DH    +NE +  R  +IPKR GA++ DL
Sbjct: 338  TDEMPYIDEPKSAFQHFIRSRRNGTLGSVLYDHRPLRLNEDDYQRVCQIPKRKGANFRDL 397

Query: 1437 PD---------------EKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            P                E+VK+++G+   L+P + +  T  R    K  FGRL W+   P
Sbjct: 398  PGVRVRANNTVELDPDVERVKVASGK--PLVPDYAI--TFVRGTSTKP-FGRLWWDEIVP 452

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            T +T  +P  +V    HP+QDR+LT+RE AR QGFPD Y+  G I+ ++
Sbjct: 453  TVVTRAEPHNQV--ILHPEQDRVLTIRENARLQGFPDYYKLTGPIKERY 499


>gi|261414310|gb|ACX83573.1| DNA chromomethylase [Hieracium piloselloides]
          Length = 607

 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 189/379 (49%), Gaps = 37/379 (9%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQS--TWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF          + + ++ ++   +Y +PR+ L+ENV
Sbjct: 209  LPLPGDVDVITGGPPCQGISGFNRFRNKDKPLEDEKNKQLVVYMDIVEYLKPRFCLMENV 268

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F KG   R  L  L+ M Y  R G++ AG++G+ Q R+R F+W A P + LP++P
Sbjct: 269  VDIIRFAKGFLGRYALGRLVSMNYIARVGLMVAGSYGLPQFRRRMFMWGARPSEKLPQYP 328

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
             P H      +  +    ++ + V    +GA     + + + D I DLP V N  ++  M
Sbjct: 329  LPTHNVVTRGVSPL---EFESNTVVHD-DGAKVELEKELYLGDAISDLPPVPNDEARDEM 384

Query: 1386 EYQNDPVSWFQKRI---RGNMA------------VLTDHISKEMNELNLIRCQKIPKRPG 1430
             Y   P + FQK I   + +M             +L DH   ++N+ +  R  +IPK+ G
Sbjct: 385  PYGEKPKTEFQKFISLKKTDMPGFVGSGQDASDHLLYDHRPLKLNDDDYQRVCQIPKKKG 444

Query: 1431 ADWHDLPDEKVKLSTGQVVD------LIPWCLPNTAKRHNQWKG-----LFGRLDWEGNF 1479
            A++ DL   +VK       D       IP   P        + G      FGRL W+   
Sbjct: 445  ANFRDLKGVRVKADNHVEWDPDVDRVYIPSGKPLVPDYAMTFVGGRSEKPFGRLWWDDTV 504

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT +T  +P  +     HP QDR+LT+RE AR QGFPD Y+  G I+ ++ Q+GNAV   
Sbjct: 505  PTVVTRAEPHNQA--ILHPLQDRVLTIRENARLQGFPDYYKLLGPIKERYIQVGNAVAVP 562

Query: 1540 LAFALGRKLKEAVESKRST 1558
            +A ALG  L  +      T
Sbjct: 563  VARALGYSLAMSCNGNAGT 581



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLNHP 1164
            E Q   ++ + +  LD+++GCG +S GL      +     T+WA++  + A E+ KLNHP
Sbjct: 26   ESQSQNNKSSEMRMLDLYSGCGAMSTGLCLGANMADVNLVTRWAVDLNKYACESLKLNHP 85

Query: 1165 ES 1166
            E+
Sbjct: 86   ET 87


>gi|357120080|ref|XP_003561758.1| PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Brachypodium
            distachyon]
          Length = 782

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 190/382 (49%), Gaps = 39/382 (10%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM---ILAFLSFADYFQPRYFLLEN 1267
            LPLPG VD + GGPPCQG SG NR N+   ++ +CE    I+ F+    + +P+Y  +EN
Sbjct: 386  LPLPGDVDVVCGGPPCQGISGYNR-NREFDAQFKCEENKEIIFFMDVMQFLKPKYVYMEN 444

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V + + F      R  L+ L+ M YQ + GI+ AG +GV Q R R F+    P + LP +
Sbjct: 445  VLDILKFADATLARYALSRLVAMRYQAKLGIMAAGCYGVPQFRMRVFLLGCHPEEKLPPF 504

Query: 1328 PEPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME 1386
            P P H         +    N    +  +T   A  + + + D + DLP VGN  S+  M 
Sbjct: 505  PLPTHEAIRKNGCPLAFERNLVGWSDGTTVQLA--KPIVLEDILSDLPEVGNEESRDEMP 562

Query: 1387 YQNDPVSWFQKRIRG-NMAV------------------LTDHISKEMNELNLIRCQKIPK 1427
            Y  DP + FQ+ IR  N  V                  L DH    ++  N +R  +IPK
Sbjct: 563  YVKDPQTEFQRYIRAFNSEVRGPKSRAAKSKSRKAKPKLYDHRPFVLDNDNYLRVLQIPK 622

Query: 1428 RPGADWHDL------PDEKVKLSTGQVVDLIPWCLP---NTAKRHNQWKGL--FGRLDWE 1476
            + GA++ DL      PD   KL   +   L+P   P   +   ++   K L  FGRL W+
Sbjct: 623  KKGANFRDLPGVVVGPDNVAKLDPTKERILLPSGNPLVLDCILKYEDGKSLRPFGRLWWD 682

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T P    +  +  HP QDR+LT+RE AR QGFPDSY+FHG ++ ++ QI NAV
Sbjct: 683  EVVGTVVTCPNAHTQAFI--HPAQDRLLTIRESARLQGFPDSYRFHGEVKERYCQIENAV 740

Query: 1537 PPTLAFALGRKLKEAVESKRST 1558
               +  ALG  L  A  +K  +
Sbjct: 741  AVPVGRALGYALAMAYLNKTGS 762



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 22/226 (9%)

Query: 996  KVRRFFRPDDISAE-KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC---NAP 1051
            +V+ FFR +D   E +A  +D R ++YS+      ++ I  K  + +   +P C    + 
Sbjct: 101  RVQWFFRAEDTVMEDQAQSNDPRRLFYSDLQDDYSLDCIVSKLTIVQ---VPPCVDKESK 157

Query: 1052 AIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEK 1111
            +I    ++ +  +     +   L    ++  ++  L S  AS  +  K      +   ++
Sbjct: 158  SIPSSQYYYDMKYSLDYSTFSTL----EMEDTNAILQSSHASSIEMKKV-----DFSKKQ 208

Query: 1112 QGGASQENHLATLDIFAGCGGLSEGL----QQSGISSTK-WAIEYEEPAGEAFKLNHPES 1166
            +     +  L+ LD++ GCGG+S GL      +G++  K WA++ +  A E+++LNHPE+
Sbjct: 209  KSPVPNKKDLSLLDLYCGCGGMSTGLCLGAHGAGVNLVKKWAVDDDLVACESYRLNHPET 268

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLP 1212
             +     N  L  + E     +  V  SE  + A  L E  IN +P
Sbjct: 269  RVRNETTNDFLLLLKEWQKLCKKYVEQSEVKDHADGLTE-TINEIP 313


>gi|356540854|ref|XP_003538899.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max]
          Length = 830

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 192/368 (52%), Gaps = 42/368 (11%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG  +FI GGPPCQG SG NRF  +       + + +L ++   D+ +P+Y L+ENV
Sbjct: 429  LPLPGDANFICGGPPCQGVSGFNRFRNAAAPLEDTKNKQLLVYMDIIDFLKPKYVLMENV 488

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+ G   R  +  L+ M YQ R G++ AG++G+ Q R R F+W A P + LP +P
Sbjct: 489  VDILRFSGGYLGRYAICRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGARPTEKLPPYP 548

Query: 1329 EPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
             P H V +   +     +       + T + A   A+ + D I DLP V N  ++    Y
Sbjct: 549  LPTHEVVSRGSVPTEFEEITVAYDKKDTCHLA--GALLLEDAISDLPHVTNDENQDERNY 606

Query: 1388 QNDPVSWFQKRIR-------GNMA--------VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            +    + FQK IR       G+MA        +L DH   ++N+ +  R  +IP++ GA+
Sbjct: 607  EAPSETEFQKYIRLKKNEMVGSMASAQSAPDRILYDHRPLQLNKDDYERVCQIPQKKGAN 666

Query: 1433 WHDLPD--------------EKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEG 1477
            + DLP               ++V L +G+   L+P + +  T  R    K  FGRL W+ 
Sbjct: 667  FRDLPGVLVNGNKVQWDPSVQRVMLDSGK--PLVPDYAM--TFVRGTSSKP-FGRLWWDE 721

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T +T  +P  +     HP Q+R+LT+RE AR QGFPD Y+  G ++ ++ Q+GNAV 
Sbjct: 722  IVSTVVTRAEPHNQA--ILHPTQNRVLTIRENARLQGFPDCYKLCGPVKERYIQVGNAVA 779

Query: 1538 PTLAFALG 1545
              +A ALG
Sbjct: 780  VPVALALG 787



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 1112 QGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            Q  +S  +    LD+++GCG +S GL      +GI   T+WA++    A E+ KLNHPE+
Sbjct: 247  QNNSSGSSEWTLLDLYSGCGAMSTGLCFGASLAGIKLVTRWAVDINAHACESLKLNHPET 306


>gi|392597870|gb|EIW87192.1| S-adenosyl-L-methionine-dependent methyltransferase [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1113

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 183/654 (27%), Positives = 275/654 (42%), Gaps = 119/654 (18%)

Query: 970  PYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIF 1029
            P  +  ++EI  P  P+  +V++  V V+ + R D +  E     D R ++ ++    + 
Sbjct: 467  PCHIGHIVEIRFPTRPRDGDVEA-HVAVKLYGRVDRLGMETE-LQDERHLFATDTRTTVP 524

Query: 1030 VEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDS 1089
            +  + G C V                 I    H  D  K  L + P H   ++   SL++
Sbjct: 525  IHRLGGLCHV-----------------IVPPFHDFDVQKW-LAESPRHFFAKFYFASLNA 566

Query: 1090 EAASRRKKGKCIEGEDELEVEKQGGASQENH-------------LATLDIFAGCGGLSEG 1136
                RR        EDE+ V K       N              L TLD FAG G     
Sbjct: 567  VWWQRRALR-----EDEVTVCKDCVPKDRNESRALDRFLAEGKPLRTLDPFAGVGAFGMA 621

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC-NVILRAVMEKC-GDAEDCVSTS 1194
            ++++G+     AIE    A +  K N    + + N C N+IL+  ++K  G   D + + 
Sbjct: 622  MEETGVVKVTHAIEISPSAAKTLKRNAARDVKVYNQCANLILKQSIKKHEGIPVDELKSI 681

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
            E A L      +         ++D I  G PCQ  S MN + ++T SK    ++L  LS+
Sbjct: 682  EDAPLPPPPLPD---------EIDCIVAGFPCQPHSRMNMYQRTTDSKTY--LMLNLLSW 730

Query: 1255 ADYFQPRYFLLENVRNFVSFN--KGQTFRLTLASLLEMG-------------YQVRFGIL 1299
             DY +P+Y + ENVR F+SF     Q  R T+   +EMG             YQ RF +L
Sbjct: 731  VDYIKPKYIMFENVRGFLSFRLRARQKNRHTITGGIEMGGLKFLIRALTEMDYQCRFAVL 790

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSDNYQYSAVRSTANG 1358
            +A  +G  Q R R F+  A     LP+ P+P H F   + L I L        + +    
Sbjct: 791  QAAHYGTPQGRVRFFLVGARRGLPLPDLPQPSHDFPLEDALVIHLPGGRDVHPILAVQGT 850

Query: 1359 APFRAMTVRDTIGDLP-------------AVGN---------------------GASKTI 1384
            AP R +TV D IGDL              A GN                     G S T+
Sbjct: 851  APHRFVTVEDAIGDLKRFDWRKPNPAHPQANGNNNALQLPSVVCDNERAFCGYQGPSATV 910

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS 1444
              Y+++P + FQ   R   +      ++      + R   +P + GAD+  +P E     
Sbjct: 911  -GYESEPRNTFQAWARSRPSTDIQQYTRTYEPTKVARVMSVPMQAGADYRSIPRE----- 964

Query: 1445 TGQVVDLIPWCLPNTAK---RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQD 1501
                  L  W   N +    R     G++GR+D +  F T++T+  P  K     +P   
Sbjct: 965  ------LWEWQFANPSSAVARGGFRAGMYGRIDQDKWFQTTVTNVDPTAKQCKVLNPWCK 1018

Query: 1502 RILTVRECARSQGFPDSYQFHGS---IQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            R++TVRE ARSQGFPD + F+     I   HRQIGNAVP  ++ AL R+L+  V
Sbjct: 1019 RMVTVRELARSQGFPDHFVFYAGADRILTMHRQIGNAVPWQVSIALARELRSVV 1072


>gi|393216765|gb|EJD02255.1| S-adenosyl-L-methionine-dependent methyltransferase [Fomitiporia
            mediterranea MF3/22]
          Length = 1109

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 211/855 (24%), Positives = 347/855 (40%), Gaps = 182/855 (21%)

Query: 785  FVEYMFEATG--------GCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIK 836
             + Y F+ TG          K FH      GS TVLG TA+ + +FL ++C +  ++ I 
Sbjct: 320  IIIYFFDKTGRRSDGRSKSSKYFHLRWFDHGSRTVLGETASPQALFLLDKCDNNPVETIL 379

Query: 837  QTV--------VVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYC-KSLYWP 887
            Q +        V++   +P       D   +      + +E K      ++ C KS    
Sbjct: 380  QKITVCHLGTDVLEPVVIP-----DNDAGPSSFHLSYKWDEEKMTMSTVDFQCEKSPKSS 434

Query: 888  ERGAFFILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISP 947
               A+      +  L    C++C  K+S   + + +   +T  +Y    Y V D+VY+  
Sbjct: 435  TERAY------AAQLEHKKCYSCAVKDSSAHQTSERSLPRTLEIYD-KHYHVFDFVYVK- 486

Query: 948  HHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDIS 1007
                            +++  +   V Q++ + + +         +QV V  F R    S
Sbjct: 487  ---------------EKDIRHRLLGVAQIVNLPLHR-------GDSQVMVTFFGRSRCNS 524

Query: 1008 AEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPS 1067
             +K      R ++ + +   I  E + G C V + +DI   +A       F  E+     
Sbjct: 525  DDKTPILQ-RSLFPTGKLERIPPERLDGHCFVSEISDIDDLDAWLEGPDNFVVEN----Q 579

Query: 1068 KGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
            K SL+Q    +  R     L+ E   +R+                        L  +++F
Sbjct: 580  KRSLRQCIECLAAR--KAYLECEEFIKRRP-----------------------LRAMNLF 614

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDA 1187
            +G  GL+ G+  SG   T WA+E+      + K NH   ++   +CN +L+  +    D 
Sbjct: 615  SGASGLTVGMDHSGFVKTCWAVEHSPSTARSLKANHEGIIVYNRDCNDLLKYAV----DL 670

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM 1247
            E      +   L    ++ V+ +LP PG+VD I GGPPCQ ++G+NRF +    +  C  
Sbjct: 671  EAGKRLPDLLSLGP--EKEVLPSLPRPGEVDLIMGGPPCQPYTGLNRFKRIDDIRQTC-- 726

Query: 1248 ILAFLSFADYFQPRYFLLENV--------------RNFVSFNKGQTFRLTLASLLEMGYQ 1293
            I   LS+ +++ P+Y L+ENV              R  V   +G   +  + +L  +GYQ
Sbjct: 727  IPTLLSYVEFYSPKYVLIENVTSILHYRLKGRQEGRKIVGGVEGGMVKFIVRTLTSLGYQ 786

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV--FAAPELKIMLSDNYQYSA 1351
                +L +  +G    RK  F WAA     LP+WP P H+       +   +++NYQ  A
Sbjct: 787  CSLKVLNSVDYGSPHQRKCVFFWAARRDLLLPKWPIPTHIPRRGHNTVNRRITNNYQ--A 844

Query: 1352 VRSTANG-------APFRAMTVRDTIGDL-----------------------PAVGNGAS 1381
              ++ +G       APF A+TV++ I DL                       PA    A 
Sbjct: 845  PLASRDGRDVKHERAPFYAVTVKEAIDDLLPWDWENPGIFYPAGARRLRSLKPAFPAAAG 904

Query: 1382 KTIMEYQNDPVSWFQKRIR-----------------GNMAVLTDHISKEMNELNLIRCQK 1424
               ++ ++  VS +   +R                 G    +  H +   +  N+ R   
Sbjct: 905  IRRVDTEDAQVSGYGYPVRYASVPRTLYQAFCRKGQGEFTRVYHHCTSLFSVKNVERTVN 964

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            +P RP A++ DLP + +++ +G              KR   WK      D  G F +  T
Sbjct: 965  VPIRPCANFKDLP-QPLRVGSGN-------------KRGRLWK------DLNGQFHSLQT 1004

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-----HGSIQHK--HRQIGNAVP 1537
               P  +     HP   R+LT+RE AR+QGFPD Y+F        +Q K   RQI  AVP
Sbjct: 1005 TIHPGARNAYIIHPTDRRVLTLRELARAQGFPDDYEFCSVKERADLQLKDIERQIACAVP 1064

Query: 1538 PTLAFALGRKLKEAV 1552
               A+ALGR L E++
Sbjct: 1065 VQQAYALGRGLGESL 1079


>gi|2766715|gb|AAB95486.1| chromomethylase [Arabidopsis arenosa]
 gi|2865435|gb|AAC02671.1| chromomethylase [Arabidopsis arenosa]
          Length = 744

 Score =  200 bits (508), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 41/367 (11%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NRF   Q+     + + +L FL   D+ +P Y L+ENV
Sbjct: 386  LPLPGTVYSVCGGPPCQGISGYNRFRNKQAPLEDKKNQQLLVFLDIIDFLKPSYVLMENV 445

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 446  VDLLRFSKGYLARHAVASFVAMNYQTRLGMMTAGSYGLPQVRNRVFLWAAQPTEKLPPYP 505

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
             P H            ++ Q   ++         A+T+ D I DLP V N  +  +  Y 
Sbjct: 506  LPTHEVEKKYNTPKEFEDLQVGLIQKELLQLD-NALTLADAISDLPPVTNSEANDVRNYN 564

Query: 1389 N-DPVSWFQ-----KRIRGNMAV--------LTDHISKEMNELNLIRCQKIPKRPGADWH 1434
            +  P + F+     KR    + V        L DH   E+ + +L R   IPK+ GA++ 
Sbjct: 565  DAAPKTDFENFISLKRSETLLPVCGGDPARRLFDHHPLELRDDDLERISYIPKKKGANFR 624

Query: 1435 DLPD--------------EKVKLSTGQVVDLIPWCLPNTAKRH--NQWKGLFGRLDWEGN 1478
            D+P               ++ KL +G+ V      +P+ A      + K  FGRL W+  
Sbjct: 625  DMPGVLVHNNKAQLNLRVKRAKLKSGKNV------VPDYAVSFIKGKSKKPFGRLWWDEI 678

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
              T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  GSI+ K+ Q+GNAV  
Sbjct: 679  VNTVVTRAEPHNQC--VIHPMQERVLSVRENARLQGFPDCYKLCGSIKEKYIQVGNAVAV 736

Query: 1539 TLAFALG 1545
             +  ALG
Sbjct: 737  PVGVALG 743


>gi|358345790|ref|XP_003636958.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
 gi|355502893|gb|AES84096.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
          Length = 827

 Score =  200 bits (508), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 195/394 (49%), Gaps = 47/394 (11%)

Query: 1197 AELAASLDENVINN-----LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMIL 1249
            +E   ++ + VIN      LPLPGQ DFI GGPPCQG SG NRF    +     + + ++
Sbjct: 410  SECKDAMKDFVINGYKEKILPLPGQADFICGGPPCQGVSGFNRFRNKNAPLDDEKNKQLI 469

Query: 1250 AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
             ++   ++ +P+Y L+ENV + + F  G   R  +  L+ M YQ R G++ AG++G+ Q 
Sbjct: 470  VYMDIINFLKPKYVLMENVVDILKFAGGFLGRYAVGRLVAMNYQARMGMMAAGSYGLPQF 529

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN--GAPFRAMTVR 1367
            R R F+W A   + LP +P P H     E + ++   ++   V  + N      +A+ + 
Sbjct: 530  RMRVFLWGALTTEKLPSYPLPTHEV---ESRSVIPIEFEAITVAYSTNEKCQLAKALYLG 586

Query: 1368 DTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR---------------GNMAVLTDHISK 1412
            DTI DLP V N  S     Y   P + FQK IR                   +L DH   
Sbjct: 587  DTIDDLPPVENDNSDDEKSYGTTPRTDFQKYIRLKRSEMVNYLADSQSAPSGMLYDHRPL 646

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPD--------------EKVKLSTGQVVDLIPWCLPN 1458
            ++N  +  R   IPK  GA++ DL                ++V L +G+   L+P     
Sbjct: 647  KLNTDDYERVCHIPKEKGANFRDLKGVLVKENKVEWDPSFKRVYLKSGK--PLVP-DYAM 703

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
            T  R    K  FGRL W+    T +T  +P  +     HPDQDR+L++RE AR QGFPD 
Sbjct: 704  TFVRGTSSKP-FGRLWWDEIVSTVVTRAEPHNQA--LLHPDQDRVLSIRENARLQGFPDC 760

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y+  G ++ ++ Q+GNAV   +A ALG  L  A+
Sbjct: 761  YKLCGPVKQRYMQVGNAVAVPVALALGYTLGLAI 794



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S GL      SGI   T+WA++  + A E+ KLNHPE+
Sbjct: 259  LDLYSGCGAMSTGLCFGASISGIKLVTRWAVDINDHACESLKLNHPET 306


>gi|226088552|dbj|BAH37021.1| chromomethylase OsMET2c [Oryza sativa Japonica Group]
          Length = 749

 Score =  199 bits (507), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 187/377 (49%), Gaps = 46/377 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCE---MILAFLSFADYFQPRYFLLEN 1267
            LP PG VD + GGPPCQG SG NR N+   +  +CE    I+ F+    + +P+Y  +EN
Sbjct: 382  LPRPGDVDVVCGGPPCQGISGYNR-NREFEAPFKCEKNKQIIVFMDVVQFLKPKYVYMEN 440

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V + + F      R  L+ L+ M YQ R GI+ AG +G+ Q R R F+      + LP +
Sbjct: 441  VLDILKFADATLARYALSRLVAMHYQARLGIMAAGCYGLPQFRMRVFLLGCHSKEKLPPF 500

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTA---NGAPF---RAMTVRDTIGDLPAVGNGAS 1381
            P P H       + ++ +    +  R+     N  P    R + + D + DLP V NG S
Sbjct: 501  PLPTH-------EAIVKNGCPLAFERNLVGWPNDTPMQLARPIVLEDILSDLPEVANGES 553

Query: 1382 KTIMEYQNDPVSWFQKRIRG-NMAV---------------LTDHISKEMNELNLIRCQKI 1425
            +  M Y   P + FQ+ IR  N+ V               L DH    ++  N  R  +I
Sbjct: 554  RDEMLYVKGPQTEFQRYIRSFNVEVHGPRAHVTKDSKSSKLYDHRPLVLDNDNYQRILQI 613

Query: 1426 PKRPGADWHDL------PDEKVKLSTGQVVDLIPWCLP---NTAKRHNQWKGL--FGRLD 1474
            PKR GA++ DL      PD   +L   +   L+P   P   +    +   K L  FGR+ 
Sbjct: 614  PKRKGANFRDLSGVIVGPDNVARLDPTKERVLLPSGRPLVLDCILAYENGKSLRPFGRVW 673

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+    T +T P    ++    HP QDR+LT+RE AR QGFPD+Y+F G+++ ++RQIGN
Sbjct: 674  WDEVVGTVLTVPN--ARMQALIHPAQDRLLTIRESARLQGFPDNYRFRGTVKDRYRQIGN 731

Query: 1535 AVPPTLAFALGRKLKEA 1551
            AV   +  ALG  L  A
Sbjct: 732  AVAVPVGRALGYALAMA 748



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 21/205 (10%)

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDD-ISAEKAYCSDIREVYYSEETHL 1027
            KP  + +LLE     E K  E      +V+ FF  +D +  E+A   D R ++YS+ T  
Sbjct: 74   KPNYIGRLLEFF---ETKTGEC---YFRVQWFFTAEDTVIGEQAQSHDPRRLFYSDLTDD 127

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
              ++ I  K  + +    P+ +  +  + +   ++ +D          + I++  +   +
Sbjct: 128  NLLDCIVSKVTIVQVP--PSVDGKS--KSVPSSDYYYDMKYSIDYSTFSTIEMEDTDDLM 183

Query: 1088 DSEAASR-RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGI 1142
             S   SR   K K I+    +  + +    ++  L+ LD++ GCGG+S GL    +  G+
Sbjct: 184  QSCYTSRINDKMKKID----VNKKHKSPVLEKMELSLLDLYCGCGGMSTGLCLGARGGGV 239

Query: 1143 S-STKWAIEYEEPAGEAFKLNHPES 1166
            + S +WAI+ +E A E+F+ NHPE+
Sbjct: 240  NLSARWAIDDDEIACESFRNNHPET 264


>gi|416020937|ref|ZP_11566837.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
            str. B076]
 gi|320321292|gb|EFW77421.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
            str. B076]
          Length = 410

 Score =  199 bits (506), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 225/442 (50%), Gaps = 51/442 (11%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            S E  L +LD+FAG GGLSEGL+++G +S  +A E      + +  NHP + +       
Sbjct: 6    SLEGRLTSLDLFAGAGGLSEGLREAGFTSL-YANEISPRYAQTYGANHPSTHV------- 57

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                      D +D +   +A ++  SL           G++D I GGPPCQGFS +N  
Sbjct: 58   ----------DNQD-IREVDARKVRKSLGLKR-------GELDLIAGGPPCQGFS-INAP 98

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
             +ST    +  +   +L F   FQPR  L+ENV   VSF  G T    L SL ++GY   
Sbjct: 99   KRST-EDSRNHLFREYLRFVTEFQPRAVLIENVPGMVSFEGGATLDAILESLKDLGYDAD 157

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
              IL A  +GV Q+R R  I  +    D    +PEP+H   AP +++  +  +    + +
Sbjct: 158  VRILYAPHYGVPQTRWRTIILGSRCGVDPTALFPEPLH--HAP-VRVNFTSQFAGKNLVN 214

Query: 1355 TANGAPFRA-MTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                    + +TV+D IGDLPA+ NG   + + +Y++   + +Q+ +R     +T H + 
Sbjct: 215  LPRSLELPSHVTVKDAIGDLPALCNGEIGEQVKDYRHPADNPYQQLMRAGSIGVTCHEAG 274

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             ++++NL R   IP  PG +W D+PD            L+P  +   A+R +  K  +GR
Sbjct: 275  RLSKINLERMTHIP--PGGNWTDIPDA-----------LLPSGM-RMARRSDHTK-RYGR 319

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            ++ EG   T +T   P    G  FH +QDR  TVRE AR Q FPD+Y F GS   ++ Q+
Sbjct: 320  VNPEGLASTILTKCDP--HWGAYFHYEQDRAFTVREAARIQSFPDTYVFCGSRVEQYEQV 377

Query: 1533 GNAVPPTLAFALGRKLKEAVES 1554
            GNAVPP L  A+G+ +  A+ S
Sbjct: 378  GNAVPPLLGAAVGQAIAFALGS 399


>gi|421735907|ref|ZP_16174779.1| hypothetical protein B217_02580 [Bifidobacterium bifidum IPLA 20015]
 gi|407296797|gb|EKF16307.1| hypothetical protein B217_02580 [Bifidobacterium bifidum IPLA 20015]
          Length = 398

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 212/438 (48%), Gaps = 55/438 (12%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L ++D+FAG GGLSEGL+++G   T +A E      E +  NHP + + +          
Sbjct: 9    LISIDLFAGAGGLSEGLEEAGFH-TLFASEIVPQYAETYARNHPSAKVCV---------- 57

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPL-PGQVDFINGGPPCQGFSGMNRFNQST 1239
                   ED   T           E V   L L  GQ+D + GGPPCQGFS +N   +S 
Sbjct: 58   -------EDIRKTDP---------ERVRRELGLEKGQLDLVAGGPPCQGFS-INAPVRSN 100

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  +   +L + D FQPR  L+ENV   VSF  G T    L +L ++GY     IL
Sbjct: 101  -EDPRNHLFREYLRYVDAFQPRAILIENVPGLVSFEHGGTLHAILDALADLGYGADVHIL 159

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPE--WPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
             A  +GV Q R R  I        +P+  WPEP              D  Q     S   
Sbjct: 160  GAPYYGVPQMRWRTIILGLR-GAVIPQSAWPEPTRHAPVRANFTTTFDGRQIVKQPSPET 218

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGA-SKTIMEYQNDPVSWFQKRIR-GNMAVLTDHISKEMN 1415
             APF   T+R+ IGDLP++ NG   + + EY   P   +Q+ +R G++ VL +H +  ++
Sbjct: 219  DAPF--TTLREAIGDLPSLQNGERGEAVKEYPVRPQCDYQRALRRGSIGVL-NHEAPRLS 275

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
             +N+ R   I +  G +W D+PDE           L+P  +   A++ +  K  +GR  W
Sbjct: 276  AINMQRLNYIQQ--GGNWTDIPDE-----------LLPKGM-RKARKSDHTK-RYGRPMW 320

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +G   T +T   P    G  FHPDQ+R  TVRE AR Q FPD Y F GS   ++ Q+GNA
Sbjct: 321  DGLSSTILTKCDP--HWGAFFHPDQNRAFTVREAARIQSFPDHYVFTGSQAEQYAQVGNA 378

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            VPP LA A+G  L   ++
Sbjct: 379  VPPLLALAVGTSLSAVLK 396


>gi|414585462|tpg|DAA36033.1| TPA: hypothetical protein ZEAMMB73_314017 [Zea mays]
          Length = 849

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 182/650 (28%), Positives = 275/650 (42%), Gaps = 146/650 (22%)

Query: 998  RRFFRPDDISAEK-------AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            R FFR +D             +  D R V+ SEE +   ++ I  K ++   +  P  + 
Sbjct: 227  RWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNMDP 284

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDE-LEV 1109
             A  Q I  C+  +D S        A+I     +G   SE AS       I  +D  LE 
Sbjct: 285  KAKAQLIEHCDLYYDMSYSVAYSTFANIS--SENGQSGSETAS------GISSDDAGLET 336

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHP 1164
                    E     LD+++GCGG+S GL      SG+   T+WA++    A ++ K NHP
Sbjct: 337  SSN---MPERTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHP 393

Query: 1165 ES----------LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN-------- 1206
            ++          L L+    V+    + +  D +  ++ SE  E A +LD++        
Sbjct: 394  QTEVRNEKADEFLALLKEWAVLCEKYVHQ--DVDSNLAGSEDQEDADTLDKDEFVVQKLI 451

Query: 1207 ------------------------------VINNL---PL-----------------PGQ 1216
                                           I+NL   PL                 PG 
Sbjct: 452  GIRYDGTGRKKGVYFKVQWEGYGPEEDTWEPIDNLSDCPLKIREFVQEGRKRKILPLPGD 511

Query: 1217 VDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            VD I GGPPCQG SG NRF          + + ++ F+    Y +P+Y L+ENV + + F
Sbjct: 512  VDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKF 571

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
              G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P P +  
Sbjct: 572  ADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDV 631

Query: 1335 ----AAPEL--KIMLS-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
                 AP    + M++ D  Q  +++        +A+ + D   DLP V N     +MEY
Sbjct: 632  VVRGGAPNAFSQCMVAYDETQRPSLK--------KALLLGDAFSDLPKVENHQPNDVMEY 683

Query: 1388 QNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
               P + FQ+ IR                 +   L DH    +N  +  R ++IP + GA
Sbjct: 684  GGSPKTEFQRYIRLGRKDMLDWSFGEEAGPDEGKLLDHQPLRLNNDDYERVKQIPVKKGA 743

Query: 1432 DWHDLPDEKVKLSTGQVVDLIPWC-----------LPNTAKRHNQWKGL--FGRLDWEGN 1478
            ++ DL  + VK+    VV+  P             +P+ A    + K L  FGRL W+  
Sbjct: 744  NFRDL--KGVKVGANNVVEWDPEVERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDET 801

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
             PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K
Sbjct: 802  VPTVVTRAEPHNQV--ILHPTQARVLTIRENARLQGFPDYYRLFGPIKEK 849


>gi|294667855|ref|ZP_06733064.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292602358|gb|EFF45800.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 410

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 227/446 (50%), Gaps = 51/446 (11%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            S E  L +LD+FAG GGLSEGL+++G +S  +A E      + + +NHP + +       
Sbjct: 6    SLEGRLTSLDLFAGAGGLSEGLREAGFTSL-YANEISPRYAQTYAVNHPGTQV------- 57

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                      D++D +   +A ++   L           G++D I GGPPCQGFS +N  
Sbjct: 58   ----------DSQD-IRKVDARKVRKLLGLKR-------GELDLIAGGPPCQGFS-INAP 98

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
             +ST    +  +   +L F   FQP+  L+ENV   VSF  G T    LA+L ++GY   
Sbjct: 99   KRSTEDS-RNHLFREYLRFVTEFQPQAVLIENVPGMVSFEGGATLDAILAALKQLGYDAD 157

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
              IL A  +GV Q+R R  I  +    D    +PEP+    AP +++  +  +    + +
Sbjct: 158  VRILYAPHYGVPQTRWRTIILGSRCGVDPTALFPEPLR--QAP-VRVNFTSQFAGKNLVN 214

Query: 1355 TANGAPFRA-MTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                    + +TV+D IGDLP + NG   + + +Y++   + +Q+ +R     +T H + 
Sbjct: 215  LPRSLELPSHVTVKDAIGDLPKLRNGEMGEPVKDYRHPADNPYQQLMRVGSTGVTCHEAA 274

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             ++++NL R   IP  PG +W D+PD            L+P  +   A+R +  K  +GR
Sbjct: 275  RLSKINLERMTHIP--PGGNWTDIPDA-----------LLPSGM-RLARRSDHTK-RYGR 319

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            ++ +G   T +T   P    G  FH +QDR  TVRE AR Q FPDSY F GS   ++ Q+
Sbjct: 320  VNPDGLASTILTKCDP--HWGAYFHYEQDRAFTVREAARIQSFPDSYVFCGSRVEQYEQV 377

Query: 1533 GNAVPPTLAFALGRKLKEAVESKRST 1558
            GNAVPP L  A+GR + + + S R T
Sbjct: 378  GNAVPPLLGAAVGRAIAQVLGSVRKT 403


>gi|411012961|gb|AFV99137.1| CMT-type cytosine DNA-methyltransferase 3c [Malus x domestica]
          Length = 974

 Score =  197 bits (501), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 185/362 (51%), Gaps = 39/362 (10%)

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLL 1265
            +  LPLPG VD + GGPPCQG SG NRF   +S  +  + + +  ++    Y +P++ L+
Sbjct: 595  LKKLPLPGDVDVVCGGPPCQGVSGFNRFRNTESPLADEKNQQLEVYMDIVRYLKPKFVLM 654

Query: 1266 ENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP 1325
            ENV + + F  G   R  L  L++M YQ R G++ AGA+G+ Q R R F+W A P + LP
Sbjct: 655  ENVVDILKFADGFLGRYALGRLVDMNYQARMGMMAAGAYGLPQFRMRVFLWGARPTEILP 714

Query: 1326 EWPEPMH-VFAAPELKIMLSDN-YQYSAVRSTANGAPFRAMTVRDTIGDLPA--VGNGAS 1381
            ++P P H V +   +      N   Y   + T      +++ + D I DLPA  +     
Sbjct: 715  QYPLPTHDVISRGVIPTQFEGNAVAYDEGQKTQLA---KSLFLEDAISDLPAKLINILFD 771

Query: 1382 KTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKV 1441
              +M    D  +  QK       VL DH   ++N  +  R  ++PKR GA + D P  +V
Sbjct: 772  ADLMGTSKD--NSLQK-------VLYDHRPLQLNPDDYARVCEVPKRKGACFRDFPGVRV 822

Query: 1442 K---------------LSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDP 1486
            +               L++G+   L+P    +  K  +     F RL W+   PT +T  
Sbjct: 823  RGDNKVEWDPEVPRVYLASGK--PLVPDYAMSFVKGSSS--KPFARLWWDETVPTVVTRA 878

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGR 1546
            +P  +  M  HP+QDR+LT+RE AR QGFPD Y+  G ++ ++ Q+GNAV   +A ALG 
Sbjct: 879  EPHNQAIM--HPEQDRVLTIRENARLQGFPDFYRLSGPVKERYMQVGNAVAVPVARALGY 936

Query: 1547 KL 1548
             L
Sbjct: 937  AL 938


>gi|390993340|ref|ZP_10263514.1| DNA-cytosine methyltransferase family protein [Xanthomonas axonopodis
            pv. punicae str. LMG 859]
 gi|372551927|emb|CCF70489.1| DNA-cytosine methyltransferase family protein [Xanthomonas axonopodis
            pv. punicae str. LMG 859]
          Length = 404

 Score =  197 bits (501), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 224/442 (50%), Gaps = 51/442 (11%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E  L +LD+FAG GGLSEGL+++G +S  +A E      + +  NHP + +         
Sbjct: 2    EGRLTSLDLFAGAGGLSEGLREAGFTSL-YANEISPRYAQTYAANHPATQV--------- 51

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                    D+ D +   +A ++   L           G++D + GGPPCQGFS +N   +
Sbjct: 52   --------DSRD-IRKVDARKVRKLLGLKR-------GELDLVAGGPPCQGFS-INAPKR 94

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
            ST    +  +   +L F   FQPR  L+ENV   VSF  G T    L SL ++GY     
Sbjct: 95   ST-EDSRNHLFREYLRFVTEFQPRAVLIENVPGMVSFEGGATLDAILESLKQLGYDADVR 153

Query: 1298 ILEAGAFGVSQSRKRAFIWAAS-PHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
            IL A  +GV Q+R R  I  +    D +  +PEP+    AP +++  +  +    + +  
Sbjct: 154  ILYAPHYGVPQTRWRTIILGSRCGVDPMALFPEPLR--QAP-VRVNFTSQFAGKNLVNLP 210

Query: 1357 NGAPFRA-MTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                  + +TV+D IGDLPA+ NG   + + +Y++   + +Q+ +R     +T H +  +
Sbjct: 211  RSLELPSHVTVKDAIGDLPALHNGEIGEQVKDYRHPADNPYQQLMRAGSTGVTCHEAARL 270

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
            +++NL R   IP  PG +W D+P+            L+P  +   A+R +  K  +GR++
Sbjct: 271  SKINLERMTHIP--PGGNWTDIPEA-----------LLPRGM-RMARRSDHTK-RYGRVN 315

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
             +G   T +T   P    G  FH +QDR  TVRE AR Q FPD+Y F GS   ++ Q+GN
Sbjct: 316  PDGLASTILTKCDP--HWGAYFHYEQDRAFTVREAARIQSFPDTYVFCGSRVEQYEQVGN 373

Query: 1535 AVPPTLAFALGRKLKEAVESKR 1556
            AVPP L  A+GR + + + S R
Sbjct: 374  AVPPLLGAAVGRAIAQVLGSVR 395


>gi|156936516|ref|YP_001440431.1| hypothetical protein ESA_pESA2p06562 [Cronobacter sakazakii ATCC
            BAA-894]
 gi|156534770|gb|ABU79595.1| hypothetical protein ESA_pESA2p06562 [Cronobacter sakazakii ATCC
            BAA-894]
          Length = 415

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 218/445 (48%), Gaps = 59/445 (13%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L +LD+FAG GGLSEGL+++G +S  +A E      + + +NHP ++             
Sbjct: 16   LTSLDLFAGAGGLSEGLREAGFTSL-YANEISPRYAQTYAVNHPGTI------------- 61

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLP-GQVDFINGGPPCQGFSGMNRFNQST 1239
                      V + +  E+ A     + N L L  G++D I GGPPCQGFS +N   +ST
Sbjct: 62   ----------VESRDIREVDA---HKIRNLLGLKRGELDLIAGGPPCQGFS-INAPKRST 107

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  +   +L F   FQPR  L+ENV   VSF  G T    L SL  +GY+    IL
Sbjct: 108  -EDSRNHLFREYLRFVSEFQPRAVLIENVPGMVSFEGGATLDAILESLKNLGYEADVRIL 166

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +G+ Q+R R  I      D L     P  +F  P  +  +  N+            
Sbjct: 167  YAPHYGIPQTRWRTIILGC--RDGL----NPTELFPEPLRQAPVRVNFTSQFGGKNLVNL 220

Query: 1360 PFRA-----MTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
            P        +TVRD IGDLP++ NG   + +  Y++   + +QK +R     +T H +  
Sbjct: 221  PISLELPSHVTVRDAIGDLPSLCNGEIGEQVKSYRHSADNQYQKLMRIGSDGVTCHEAAR 280

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            ++++NL R   IP+  G +W ++PDE           L+P  +   A+R +  K  +GR+
Sbjct: 281  LSKINLERMAHIPQ--GGNWTNIPDE-----------LLPRGM-RMARRSDHTK-RYGRV 325

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
              +G   T +T   P    G  FH +QDR  TVRE AR Q FPD+Y F GS   ++ Q+G
Sbjct: 326  HPDGLASTILTKCDP--HWGAYFHYEQDRTFTVREAARLQSFPDTYTFCGSRVEQYEQVG 383

Query: 1534 NAVPPTLAFALGRKLKEAVESKRST 1558
            NAVPP L  A+GR +  A+ + + T
Sbjct: 384  NAVPPLLGAAVGRTIARALGNSQRT 408


>gi|409107272|pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
            Complex With Sah
 gi|409107273|pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
            Complex With Sah
          Length = 784

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 181/380 (47%), Gaps = 52/380 (13%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NR+          + +  + F     Y +P+Y L ENV
Sbjct: 374  LPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQXVTFXDIVAYLKPKYVLXENV 433

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   +  L+ L+   YQ R G   AG +G+ Q R R F+W A     LP++P
Sbjct: 434  VDILKFADGYLGKYALSCLVAXKYQARLGXXVAGCYGLPQFRXRVFLWGALSSXVLPKYP 493

Query: 1329 EPMHVF----AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTI 1384
             P +       AP         Y  +   S       +A+ + D I DLP V N     +
Sbjct: 494  LPTYDVVVRGGAPNAFSQCXVAYDETQKPSLK-----KALLLGDAISDLPKVQNHQPNDV 548

Query: 1385 MEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKR 1428
             EY   P + FQ+ IR                 +   L DH    +N  +  R Q+IP +
Sbjct: 549  XEYGGSPKTEFQRYIRLSRKDXLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQIPVK 608

Query: 1429 PGADWHDL--------------PD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FG 1471
             GA++ DL              P+ E+VKLS+G+ +      +P+ A    + K L  FG
Sbjct: 609  KGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPL------VPDYAXSFIKGKSLKPFG 662

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+   PT +T  +P  +V    HP Q R+LT+RE AR QGFPD Y+  G I+ K+ Q
Sbjct: 663  RLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQ 720

Query: 1532 IGNAVPPTLAFALGRKLKEA 1551
            +GNAV   +A ALG  L +A
Sbjct: 721  VGNAVAVPVARALGYCLGQA 740



 Score = 48.5 bits (114), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 28/183 (15%)

Query: 998  RRFFRPDD--------ISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN 1049
            R FFR +D        IS +  +  D R V+ SEE +   ++ I  K ++   +  P  +
Sbjct: 95   RWFFRAEDTVINSLVSISVD-GHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD--PNXD 151

Query: 1050 APAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEV 1109
              A  Q I  C+  +D S        A+I     +G   S+ AS         G    +V
Sbjct: 152  PKAKAQLIESCDLYYDXSYSVAYSTFANIS--SENGQSGSDTAS---------GISSDDV 200

Query: 1110 EKQGGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNH 1163
            + +  +S     ATL D+++GCGG S GL      SG+   T+WA+++   A ++ K NH
Sbjct: 201  DLETSSSXPTRTATLLDLYSGCGGXSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260

Query: 1164 PES 1166
            P++
Sbjct: 261  PQT 263


>gi|2766713|gb|AAB95485.1| chromomethylase [Arabidopsis thaliana]
 gi|2865414|gb|AAC02659.1| chromomethylase [Arabidopsis thaliana]
          Length = 791

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 190/369 (51%), Gaps = 46/369 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMH----VFAAP-ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKT 1383
             P H     F  P E K +     Q   ++         A+T+ D I DLP V N  +  
Sbjct: 522  LPTHEVAKKFNTPKEFKDLQVGRIQMEFLKLD------NALTLADAISDLPPVTNYVAND 575

Query: 1384 IMEYQN-DPVSWFQKRI---RGNMAV----------LTDHISKEMNELNLIRCQKIPKRP 1429
            +M+Y +  P + F+  I   R    +          L DH    + + +L R   IPK+ 
Sbjct: 576  VMDYNDAAPKTEFENFISLKRSETLLPACGGDPTRRLFDHQPLVLGDDDLERVSYIPKQK 635

Query: 1430 GADWHDLPDEKV-------------KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ D+P   V             KL +G+  +++P    +  K   + K  FGRL  +
Sbjct: 636  GANYRDMPGVLVHNNKAEINPRFRAKLKSGK--NVVPAYAISFIK--GKSKKPFGRLWGD 691

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  G+I+ K+ Q+GNAV
Sbjct: 692  EIVNTVVTRAEPHNQC--VIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAV 749

Query: 1537 PPTLAFALG 1545
               +  ALG
Sbjct: 750  AVPVGVALG 758



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|2865422|gb|AAC02663.1| chromomethylase [Arabidopsis thaliana]
          Length = 791

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 190/369 (51%), Gaps = 46/369 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMH----VFAAP-ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKT 1383
             P H     F  P E K +     Q   ++         A+T+ D I DLP V N  +  
Sbjct: 522  LPTHEVAKKFNTPKEFKDLQVGRIQMEFLKLD------NALTLADAISDLPPVTNYVAND 575

Query: 1384 IMEYQN-DPVSWFQKRI---RGNMAV----------LTDHISKEMNELNLIRCQKIPKRP 1429
            +M+Y +  P + F+  I   R    +          L DH    + + +L R   IPK+ 
Sbjct: 576  VMDYNDAAPKTEFENFISLKRSETLLPACGGDPTRRLFDHQPLVLGDDDLERVSYIPKQK 635

Query: 1430 GADWHDLPDEKV-------------KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ D+P   V             KL +G+  +++P    +  K   + K  FGRL  +
Sbjct: 636  GANYRDMPGVLVHNNKAEINPRFRAKLKSGK--NVVPAYAISFIK--GKSKKPFGRLWGD 691

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  G+I+ K+ Q+GNAV
Sbjct: 692  EIVNTVVTRAEPHNQC--VIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAV 749

Query: 1537 PPTLAFALG 1545
               +  ALG
Sbjct: 750  AVPVGVALG 758



 Score = 40.8 bits (94), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|18412893|ref|NP_565245.1| putative DNA (cytosine-5)-methyltransferase CMT1 [Arabidopsis
            thaliana]
 gi|110832797|sp|O49139.2|CMT1_ARATH RecName: Full=Putative DNA (cytosine-5)-methyltransferase CMT1;
            AltName: Full=Chromomethylase 1; AltName: Full=Protein
            CHROMOMETHYLASE 1
 gi|6503286|gb|AAF14662.1|AC011713_10 Identical to gb|AF039367 ecotype Col-0 chromomethylase (CMT1) gene
            from Arabidopsis thaliana [Arabidopsis thaliana]
 gi|2865416|gb|AAC02660.1| chromomethylase [Arabidopsis thaliana]
 gi|332198321|gb|AEE36442.1| putative DNA (cytosine-5)-methyltransferase CMT1 [Arabidopsis
            thaliana]
          Length = 791

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 190/369 (51%), Gaps = 46/369 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMH----VFAAP-ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKT 1383
             P H     F  P E K +     Q   ++         A+T+ D I DLP V N  +  
Sbjct: 522  LPTHEVAKKFNTPKEFKDLQVGRIQMEFLKLD------NALTLADAISDLPPVTNYVAND 575

Query: 1384 IMEYQN-DPVSWFQKRI---RGNMAV----------LTDHISKEMNELNLIRCQKIPKRP 1429
            +M+Y +  P + F+  I   R    +          L DH    + + +L R   IPK+ 
Sbjct: 576  VMDYNDAAPKTEFENFISLKRSETLLPAFGGDPTRRLFDHQPLVLGDDDLERVSYIPKQK 635

Query: 1430 GADWHDLPDEKV-------------KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ D+P   V             KL +G+  +++P    +  K   + K  FGRL  +
Sbjct: 636  GANYRDMPGVLVHNNKAEINPRFRAKLKSGK--NVVPAYAISFIK--GKSKKPFGRLWGD 691

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  G+I+ K+ Q+GNAV
Sbjct: 692  EIVNTVVTRAEPHNQC--VIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAV 749

Query: 1537 PPTLAFALG 1545
               +  ALG
Sbjct: 750  AVPVGVALG 758



 Score = 40.8 bits (94), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|418519200|ref|ZP_13085307.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas axonopodis pv.
            malvacearum str. GSPB1386]
 gi|410700593|gb|EKQ59141.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas axonopodis pv.
            malvacearum str. GSPB1386]
          Length = 400

 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 223/439 (50%), Gaps = 51/439 (11%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            + +LD+FAG GGLSEGL+++G +S  +A E      + +  NHP + +            
Sbjct: 1    MTSLDLFAGAGGLSEGLREAGFTSL-YANEISPRYAQTYAANHPATQV------------ 47

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                 D+ D +   +A ++   L           G++D + GGPPCQGFS +N   +ST 
Sbjct: 48   -----DSRD-IRKVDARKVRKLLGLKR-------GELDLVAGGPPCQGFS-INAPKRST- 92

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   +L F   FQPR  L+ENV   VSF  G T    L SL ++GY     IL 
Sbjct: 93   EDSRNHLFREYLRFVTEFQPRAVLIENVPGMVSFEGGATLDAILESLKQLGYDADVRILY 152

Query: 1301 AGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            A  +GV Q+R R  I  +    D +  +PEP+    AP +++  +  +    + +     
Sbjct: 153  APHYGVPQTRWRTIILGSRCGVDPMALFPEPLR--QAP-VRVNFTSQFAGKNLVNLPRSL 209

Query: 1360 PFRA-MTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
               + +TV+D IGDLPA+ NG   + + +Y++   + +Q+ +R     +T H +  ++++
Sbjct: 210  ELPSHVTVKDAIGDLPALHNGEIGEQVKDYRHPADNPYQQLMRAGSTGVTCHEAARLSKI 269

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
            NL R   IP  PG +W D+P+            L+P  +   A+R +  K  +GR++ +G
Sbjct: 270  NLERMTHIP--PGGNWTDIPEA-----------LLPRGM-RMARRSDHTK-RYGRVNPDG 314

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T +T   P    G  FH +QDR  TVRE AR Q FPD+Y F GS   ++ Q+GNAVP
Sbjct: 315  LASTILTKCDP--HWGAYFHYEQDRAFTVREAARIQSFPDTYVFCGSRVEQYEQVGNAVP 372

Query: 1538 PTLAFALGRKLKEAVESKR 1556
            P L  A+GR + + + S R
Sbjct: 373  PLLGAAVGRAIAQVLGSVR 391


>gi|353240447|emb|CCA72316.1| related to cytosine-specific methyltransferase EC=2.1.1.37-Laccaria
            bicolor [Piriformospora indica DSM 11827]
          Length = 1301

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 226/490 (46%), Gaps = 66/490 (13%)

Query: 1113 GGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINN 1172
              AS    + TLD+F+G GGL+ G+  +G  + KWA+E   PA + F+ N P++ +   +
Sbjct: 819  ANASTGTQMNTLDLFSGAGGLALGVTMTGALAVKWAVEKSIPASQTFRRNFPDAQVYTQD 878

Query: 1173 CNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVIN--NLPLPGQVDFINGGPPCQGFS 1230
             N        +C  A + +   +A     SLD       ++P P  VD I  G PC GFS
Sbjct: 879  IN--------EC--ASNALRRGQARHRVPSLDPQNPRKRHMPPPQAVDVILAGLPCSGFS 928

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK----------GQTF 1280
              + + + T       +++A  +    ++PR+F++ENV   +++                
Sbjct: 929  MQSVYGRDTKEAQVGLVLVARGTHKASYRPRFFIIENVARMINYESLDYSTEETISFAIV 988

Query: 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV------- 1333
            ++ L +L  +GY VR+G+  A  +G  Q R R F + +     LPE P P HV       
Sbjct: 989  KIILRTLTALGYSVRWGLFNAVNYGSPQHRSRLFFYGSRGGSRLPEIPIPTHVASKNSRT 1048

Query: 1334 ----FAAPELKIM--------------LSDNYQYS-AVRSTANGAPFRAMTVRDTIGDLP 1374
                F     K+M              + D   +   VR+  +G   RA  V   IG+ P
Sbjct: 1049 RFQRFTLVPTKLMHYLAALPPVNISSAIGDLPPFDWTVRNPLSGVTQRA-NVPSFIGESP 1107

Query: 1375 AVGNGASKTI-MEYQND-PVSWFQKRIRGNMAV---LTDHISKEMNELN--LIRCQKIPK 1427
            A  + A      +YQ + P + +Q R+R  M V   +T H ++   E +    +   +  
Sbjct: 1108 AGSSTAGYPHGCDYQQERPKTLYQARMRRGMHVGKKVTLHYTRTFKEHSHKAEKVIAVAM 1167

Query: 1428 RPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK-GLFGRLDWEGNFPTSITDP 1486
            RP AD   +P         +V+    +  P +A   + W  G +GRLDW+G F + +T  
Sbjct: 1168 RPNADHRTIP---------RVLYDWAYSHPLSAAARDLWAPGRYGRLDWQGVFNSFVTRI 1218

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGR 1546
             P  K G   HP Q R+LT+RE AR QGFPD YQF G      RQIG AVP  +  ALGR
Sbjct: 1219 DPTSKQGKVLHPSQRRVLTIREVARGQGFPDHYQFCGDPGAIIRQIGEAVPVQMGEALGR 1278

Query: 1547 KLKEAVESKR 1556
             L+ A+ +++
Sbjct: 1279 MLRNAMIAQK 1288



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 134/363 (36%), Gaps = 42/363 (11%)

Query: 492 IYLSSIKEWMIEFGSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLK 551
           I L  + +W I  G     + I T  AWY L +P+ +Y   YE   K+ +++  I++   
Sbjct: 212 IVLGPVLKWWIGDGVGDREMYILTSAAWYVLEEPADEYRRVYERFWKSHKLSQLIMSFAT 271

Query: 552 EQTRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQIKK 611
           +     +  FT+ ++    I+++  S I       +  + + G+ +       P    + 
Sbjct: 272 KNPTGDKAEFTESLESDFTIREESFSRIGRAMTGNDLDLAISGRFIENDHLYLPKSLAQT 331

Query: 612 CA-FIIG-LMKKMEERHHTKWLVKKKKVQKSEINLNPRASMGPVVVSKRKVMQATTTRLI 669
            A  ++G  +K+M+ R   +                 R+   P  V  R   +   + L+
Sbjct: 332 LAESVLGQRLKRMQPRGDPR-------------PYTCRSQQPPPGVDARTTRRTVVSPLV 378

Query: 670 NRIWGEYYSNYSPEDGKEETACEANEDEEVEEQGENEEDDTE-EEKLISEERQISCSVAV 728
           ++I   Y+ N     G          +  VE   +   D  E   K I   + I     +
Sbjct: 379 SKIAARYFRNPFEVVGPPPEHMNPPREPIVERFPDAPLDVGEWVHKDIDSYKNIQYFSRL 438

Query: 729 QIKSRSTKKEITWEGECVRKSGLALYKKAIVHGEVVS--------LGSAVLVEVDELDQL 780
            ++ RS K      G+CV          AI  GE+VS          S  L +      +
Sbjct: 439 SLEGRSYKL-----GDCV----------AIKQGEIVSTRDYRPPATSSNQLADNSWFGII 483

Query: 781 PVIYFVEYMFEATG--GCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQT 838
             +Y  E   EA G    +  H      G  T LG  A   E+FL   C ++ L  I++ 
Sbjct: 484 KRLYTAEDP-EAIGINAIRFAHVQWFVHGCWTDLGELAASNELFLTYDCSNIGLATIQKL 542

Query: 839 VVV 841
           + V
Sbjct: 543 ISV 545


>gi|338999490|ref|ZP_08638133.1| hypothetical protein GME_15605 [Halomonas sp. TD01]
 gi|338763639|gb|EGP18628.1| hypothetical protein GME_15605 [Halomonas sp. TD01]
          Length = 394

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 207/440 (47%), Gaps = 61/440 (13%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            + ++D+F G GGLS GL+ +G   T  A E +    E FK NHP + M+I          
Sbjct: 6    MKSIDLFCGAGGLSCGLKMAGFD-TILANELKASHAETFKHNHPNAEMVI---------- 54

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD     +     +L  +L+EN         ++D + GGPPCQGFS          
Sbjct: 55   ----GDIRQLCAVDLKGKL--NLEEN---------ELDLVAGGPPCQGFSVNAPIRD--L 97

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   FL  A    P+  L+ENV   VS  KG   +     L   GY+V   IL 
Sbjct: 98   DDERNHLFKDFLRIAFELMPKAILIENVPGIVSLGKGTVVKQIYKELESRGYRVEHRILY 157

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH-------VFAAPELKIMLSDNYQYSAVR 1353
            AG +GV Q R R  I A    +    +P+P +          A EL + L   +     +
Sbjct: 158  AGHYGVPQLRFRTIIIAVKGREKEIYFPQPQYNSTARANFAGAKELCLKLLPLFASELKK 217

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
             T         TV D + DLP + +G+  T+M Y+  P   +QK +R N   +T+H    
Sbjct: 218  QT---------TVWDALSDLPPIESGSVNTLMNYEAPPQGEYQKYLRKNSDKVTNHSCNG 268

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            +  +NL R + IP+  G  W D+P            D++P  L   A+R +  K  +GRL
Sbjct: 269  LGPVNLERLKHIPQ--GGSWRDIP-----------FDMLPKGL-QRARRSDHTK-RYGRL 313

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
              +    T +T   P    G  FHP QDR+++VRE AR Q FPD Y F GS+Q ++ Q+G
Sbjct: 314  SPDSLCSTILTKCDP--HWGSFFHPIQDRVISVREAARIQSFPDDYSFLGSLQEQYEQVG 371

Query: 1534 NAVPPTLAFALGRKLKEAVE 1553
            NAVPP +A A+G ++++ ++
Sbjct: 372  NAVPPLMARAIGEEIRKMIQ 391


>gi|222630668|gb|EEE62800.1| hypothetical protein OsJ_17603 [Oryza sativa Japonica Group]
          Length = 1190

 Score =  193 bits (491), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 186/377 (49%), Gaps = 47/377 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCE---MILAFLSFADYFQPRYFLLEN 1267
             PL G VD + GGPPCQG SG NR N+   +  +CE    I+ F+    + +P+Y  +EN
Sbjct: 798  FPL-GDVDVVCGGPPCQGISGYNR-NREFEAPFKCEKNKQIIVFMDVVQFLKPKYVYMEN 855

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V + + F      R  L+ L+ M YQ R GI+ AG +G+ Q R R F+      + LP +
Sbjct: 856  VLDILKFADATLARYALSRLVAMHYQARLGIMAAGCYGLPQFRMRVFLLGCHSKEKLPPF 915

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTA---NGAPF---RAMTVRDTIGDLPAVGNGAS 1381
            P P H       + ++ +    +  R+     N  P    R + + D + DLP V NG S
Sbjct: 916  PLPTH-------EAIVKNGCPLAFERNLVGWPNDTPMQLARPIVLEDILSDLPEVANGES 968

Query: 1382 KTIMEYQNDPVSWFQKRIRG-NMAV---------------LTDHISKEMNELNLIRCQKI 1425
            +  M Y   P + FQ+ IR  N+ V               L DH    ++  N  R  +I
Sbjct: 969  RDEMLYVKGPQTEFQRYIRSFNVEVHGPRAHVTKDSKSSKLYDHRPLVLDNDNYQRILQI 1028

Query: 1426 PKRPGADWHDL------PDEKVKLSTGQVVDLIPWCLP---NTAKRHNQWKGL--FGRLD 1474
            PKR GA++ DL      PD   +L   +   L+P   P   +    +   K L  FGR+ 
Sbjct: 1029 PKRKGANFRDLSGVIVGPDNVARLDPTKERVLLPSGRPLVLDCILAYENGKSLRPFGRVW 1088

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+    T +T P    ++    HP QDR+LT+RE AR QGFPD+Y+F G+++ ++RQIGN
Sbjct: 1089 WDEVVGTVLTVPN--ARMQALIHPAQDRLLTIRESARLQGFPDNYRFRGTVKDRYRQIGN 1146

Query: 1535 AVPPTLAFALGRKLKEA 1551
            AV   +  ALG  L  A
Sbjct: 1147 AVAVPVGRALGYALAMA 1163



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 21/205 (10%)

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDD-ISAEKAYCSDIREVYYSEETHL 1027
            KP  + +LLE     E K  E      +V+ FF  +D +  E+A   D R ++YS+ T  
Sbjct: 431  KPNYIGRLLEFF---ETKTGEC---YFRVQWFFTAEDTVIGEQAQSHDPRRLFYSDLTDD 484

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
              ++ I  K  + +    P+ +  +  + +   ++ +D          + I++  +   +
Sbjct: 485  NLLDCIVSKVTIVQVP--PSVDGKS--KSVPSSDYYYDMKYSIDYSTFSTIEMEDTDDLM 540

Query: 1088 DSEAASR-RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGI 1142
             S   SR   K K I+    +  + +    ++  L+ LD++ GCGG+S GL    +  G+
Sbjct: 541  QSCYTSRINDKMKKID----VNKKHKSPVLEKMELSLLDLYCGCGGMSTGLCLGARGGGV 596

Query: 1143 S-STKWAIEYEEPAGEAFKLNHPES 1166
            + S +WAI+ +E A E+F+ NHPE+
Sbjct: 597  NLSARWAIDDDEIACESFRNNHPET 621


>gi|218196311|gb|EEC78738.1| hypothetical protein OsI_18945 [Oryza sativa Indica Group]
          Length = 1325

 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 186/377 (49%), Gaps = 47/377 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCE---MILAFLSFADYFQPRYFLLEN 1267
             PL G VD + GGPPCQG SG NR N+   +  +CE    I+ F+    + +P+Y  +EN
Sbjct: 933  FPL-GDVDVVCGGPPCQGISGYNR-NREFEAPFKCEKNKQIIVFMDVVQFLKPKYVYMEN 990

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V + + F      R  L+ L+ M YQ R GI+ AG +G+ Q R R F+      + LP +
Sbjct: 991  VLDILKFADATLARYALSRLVAMHYQARLGIMAAGCYGLPQFRMRVFLLGCHSKEKLPPF 1050

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTA---NGAPF---RAMTVRDTIGDLPAVGNGAS 1381
            P P H       + ++ +    +  R+     N  P    R + + D + DLP V NG S
Sbjct: 1051 PLPTH-------EAIVKNGCPLAFERNLVGWPNDTPMQLARPIVLEDILSDLPEVANGES 1103

Query: 1382 KTIMEYQNDPVSWFQKRIRG-NMAV---------------LTDHISKEMNELNLIRCQKI 1425
            +  M Y   P + FQ+ IR  N+ V               L DH    ++  N  R  +I
Sbjct: 1104 RDEMLYVKGPQTEFQRYIRSFNVEVHGPRAHVTKDSKSSKLYDHRPLVLDNDNYQRILQI 1163

Query: 1426 PKRPGADWHDL------PDEKVKLSTGQVVDLIPWCLP---NTAKRHNQWKGL--FGRLD 1474
            PKR GA++ DL      PD   +L   +   L+P   P   +    +   K L  FGR+ 
Sbjct: 1164 PKRKGANFRDLSGVIVGPDNVARLDPTKERVLLPSGRPLVLDCILAYENGKSLRPFGRVW 1223

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+    T +T P    ++    HP QDR+LT+RE AR QGFPD+Y+F G+++ ++RQIGN
Sbjct: 1224 WDEVVGTVLTVPN--ARMQALIHPAQDRLLTIRESARLQGFPDNYRFRGTVKDRYRQIGN 1281

Query: 1535 AVPPTLAFALGRKLKEA 1551
            AV   +  ALG  L  A
Sbjct: 1282 AVAVPVGRALGYALAMA 1298



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 21/205 (10%)

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDD-ISAEKAYCSDIREVYYSEETHL 1027
            KP  + +LLE     E K  E      +V+ FF  +D +  E+A   D R ++YS+ T  
Sbjct: 608  KPNYIGRLLEFF---ETKTGEC---YFRVQWFFTAEDTVIGEQAQSHDPRRLFYSDLTDD 661

Query: 1028 IFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
              ++ I  K  + +    P+ +  +  + +   ++ +D          + I++  +   +
Sbjct: 662  NLLDCIVSKVTIVQVP--PSVDGKS--KSVPSSDYYYDMKYSIDYSTFSTIEMEDTDDLM 717

Query: 1088 DSEAASR-RKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGI 1142
             S   SR   K K I+    +  + +    ++  L+ LD++ GCGG+S GL    +  G+
Sbjct: 718  QSCYTSRINDKMKKID----VNKKHKSPVLEKMELSLLDLYCGCGGMSTGLCLGARGGGV 773

Query: 1143 S-STKWAIEYEEPAGEAFKLNHPES 1166
            + S +WAI+ +E A E+F+ NHPE+
Sbjct: 774  NLSARWAIDDDEIACESFRNNHPET 798


>gi|393230538|gb|EJD38142.1| S-adenosyl-L-methionine-dependent methyltransferase [Auricularia
            delicata TFB-10046 SS5]
          Length = 710

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 229/501 (45%), Gaps = 96/501 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            +  LD F G GGL+ G+++ S    TK+A++ +E A +AF  NHP + +  ++ N  L +
Sbjct: 211  MQMLDPFCGAGGLTAGIERGSRCIQTKFAVDSDEEAAKAFAKNHPHATVFHDDANSFLTS 270

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            +     D   C+      E++ +  ++        G +D I  GPPCQG S +N    + 
Sbjct: 271  L-----DQHTCIPDVNGNEISPADRKH--------GHIDVICAGPPCQGHSTLNSHRTAD 317

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF----------------NKGQTFRLT 1283
              K  C +IL  LS  ++ +PRY ++ENV   + +                  G  F +T
Sbjct: 318  DPK-NC-LILTALSLVEHIRPRYLVIENVVMIMGWRLMAEQRGQGIIRGGETHGGIFLIT 375

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA-APELKIM 1342
             + LL +GYQVR G+L AG  G  Q+R+R F+ AA P  TLP++P P H F  A  LK+ 
Sbjct: 376  -SILLRLGYQVRIGLLNAGMHGTPQNRRRFFLIAAEPGSTLPDFPHPTHAFPKAKTLKMA 434

Query: 1343 LSDNYQYS-------------AVRSTANGAPFRAMTVRDTIGDLPA-------------- 1375
                 Q                +R      P   +TV D IGDL                
Sbjct: 435  PFPTAQPGWPVDDGEEAVGDDEMRLPPLCVPHPKITVGDAIGDLKGYNWKRNPERQHNAP 494

Query: 1376 -----VGNGASKTIME-YQNDPVSWFQKRIRGNMAVLT----DHISKEMNELNLIRCQKI 1425
                 +  G +  +   Y  +  S FQ R R N  V++     H++    E  +     I
Sbjct: 495  SFPCDLKKGCNPNMPNAYARNAASEFQVRARENTEVMSAKQLQHVTAGFKEYIVRNVWDI 554

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK---------RHNQWKGL-----FG 1471
            P R      D  DE  +      +D      P++ +          H    G+     + 
Sbjct: 555  PIRA-----DGEDENARNPGWTAID------PDSRRAQYGLADPTSHVSRDGMREGRYYR 603

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL   G+F T +T+ +P  K     HP+Q+R+++VRE AR+QGFPD ++F G+     RQ
Sbjct: 604  RLKMNGHFATLVTNVRPTAKQSQVLHPNQNRLVSVREQARAQGFPDDFKFVGNAMAMQRQ 663

Query: 1532 IGNAVPPTLAFALGRKLKEAV 1552
            IGNAVP TLA A+GR+L++++
Sbjct: 664  IGNAVPVTLAEAIGRELRKSM 684


>gi|2865420|gb|AAC02662.1| chromomethylase [Arabidopsis thaliana]
          Length = 754

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 186/360 (51%), Gaps = 46/360 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMH----VFAAP-ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKT 1383
             P H     F  P E K +     Q   ++         A+T+ D I DLP V N  +  
Sbjct: 522  LPTHEVAKKFNTPKEFKDLQVGRIQMEFLKLD------NALTLADAISDLPPVTNYVAND 575

Query: 1384 IMEYQN-DPVSWFQKRI---RGNMAV----------LTDHISKEMNELNLIRCQKIPKRP 1429
            +M+Y +  P + F+  I   R    +          L DH    + + +L R   IPK+ 
Sbjct: 576  VMDYNDAAPKTEFENFISLKRSETLLPACGGDPTRRLFDHQPLVLGDDDLERVSYIPKQK 635

Query: 1430 GADWHDLPDEKV-------------KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ D+P   V             KL +G+  +++P    +  K   + K  FGRL  +
Sbjct: 636  GANYRDMPGVLVHNNKAEINPRFRAKLKSGK--NVVPAYAISFIK--GKSKKPFGRLWGD 691

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  G+I+ K+ Q+GNAV
Sbjct: 692  EIVNTVVTRAEPHNQC--VIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAV 749



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|297842789|ref|XP_002889276.1| hypothetical protein ARALYDRAFT_895912 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297335117|gb|EFH65535.1| hypothetical protein ARALYDRAFT_895912 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 876

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 232/497 (46%), Gaps = 105/497 (21%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES----------LM 1168
            LD+++GCG +S G       +G+   TKW+++  + A ++F+ NHPE+          L+
Sbjct: 222  LDLYSGCGAMSTGFCMGASIAGVKLITKWSVDINKFACDSFRHNHPETEVRNEAAEDFLI 281

Query: 1169 LINNCNVIL-RAVMEKCGDAEDCVS---------------TSEAAELAASLDE-----NV 1207
            L+     +  R  +    +  + +S                S   EL+A   E      +
Sbjct: 282  LLKEWKRLCERFSLSSSTEPMESISELEDEESDENDDIDEASTGMELSAGEFEVEKFVGI 341

Query: 1208 I---------NNLPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFAD 1256
            +           L L G V  + GGPPCQG SG NRF   Q+     + + +L FL   D
Sbjct: 342  VFGDPKGTGEKTLHLKGTVYSVCGGPPCQGISGYNRFRNKQAPLEDKKNQQLLVFLDIID 401

Query: 1257 YFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIW 1316
            + +P Y L+ENV + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+W
Sbjct: 402  FLKPSYVLMENVVDLLRFSKGYLARHAVASFVAMNYQTRLGMMTAGSYGLPQVRNRVFLW 461

Query: 1317 AASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV 1376
            AA P + L             + +++  DN                A+T+ D I DLP V
Sbjct: 462  AAQPTEDLQ--------VGLIQKELLQLDN----------------ALTLADAISDLPPV 497

Query: 1377 GNGASKTIMEYQN-DPVSWFQ-----KRIRGNMAV--------LTDHISKEMNELNLIRC 1422
             N  +  +  Y +  P + F+     KR    + V        L DH   E+ + +L R 
Sbjct: 498  TNSEANDVRNYNDAAPKTDFENFISLKRSETLLPVCGGDPARRLFDHQPLELRDDDLERI 557

Query: 1423 QKIPKRPGADWHDLPD--------------EKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
              IPK+ GA++ D+P               ++ KL +G+  +++P    +  K   + K 
Sbjct: 558  SYIPKKKGANFRDMPGVLVHNNKAQLNLRVKRAKLKSGK--NVVPAYAVSFIK--GKSKK 613

Query: 1469 LFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
             FGRL W+    T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  GSI+ K
Sbjct: 614  PFGRLWWDEIVNTVVTRAEPHNQC--VIHPMQERVLSVRENARLQGFPDCYKLCGSIKEK 671

Query: 1529 HRQIGNAVPPTLAFALG 1545
            + Q+GNAV   +  ALG
Sbjct: 672  YIQVGNAVAVPVGVALG 688


>gi|2865433|gb|AAC02670.1| chromomethylase [Arabidopsis suecica]
          Length = 754

 Score =  190 bits (483), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 186/360 (51%), Gaps = 46/360 (12%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGIVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMH----VFAAP-ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKT 1383
             P H     F  P E K +     Q   ++         A+T+ D I DLP V N  +  
Sbjct: 522  LPTHEVAKKFNTPKEFKDLQVGRIQMEFLKLD------NALTLADAISDLPPVTNYVAND 575

Query: 1384 IMEYQN-DPVSWFQKRI---RGNMAV----------LTDHISKEMNELNLIRCQKIPKRP 1429
            +M+Y +  P + F+  I   R    +          L DH    + + +L R   IPK+ 
Sbjct: 576  VMDYNDAAPKTEFENFISLKRSETLLPACGGDPTRRLFDHQPLVLGDDDLERVSYIPKQK 635

Query: 1430 GADWHDLPDEKV-------------KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            GA++ D+P   V             KL +G+  +++P    +  K   + K  FGRL  +
Sbjct: 636  GANYRDMPGVLVHNNKAEINPRFRAKLKSGK--NVVPAYAISFIK--GKSKKPFGRLWGD 691

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T  +P  +     HP Q+R+L+VRE AR QGFPD Y+  G+I+ K+ Q+GNAV
Sbjct: 692  EIVNTVVTRAEPHNQC--VIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAV 749



 Score = 40.8 bits (94), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|299756527|ref|XP_001829400.2| hypothetical protein CC1G_00579 [Coprinopsis cinerea okayama7#130]
 gi|298411717|gb|EAU92360.2| hypothetical protein CC1G_00579 [Coprinopsis cinerea okayama7#130]
          Length = 1235

 Score =  190 bits (482), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 219/848 (25%), Positives = 339/848 (39%), Gaps = 200/848 (23%)

Query: 798  LFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857
            L H   ++ G + +    AN +E+F  N C  L   ++   V V        H H + I 
Sbjct: 466  LVHIQWLEHGCNLLHEEQANPQELFYTNLCCSLPWNNVLGKVTV--------HWHPQGIV 517

Query: 858  NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVG-----SCHAC-- 910
              D               P E+YC+ +Y  E  +F  +  +            +C AC  
Sbjct: 518  KID---------------PHEFYCRMVYDQEFSSFVSINREQYSRLEAESPPENCPACQY 562

Query: 911  -----GTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRN 965
                    E  + K+   V++   F Y   +Y + D+V        +  +      A  N
Sbjct: 563  SEMVQSMNECRRLKDDNGVYN--GFTYRGHKYHLDDFVL-------YVDSSKPPPTAPAN 613

Query: 966  VGLKPYVVCQLLEIIVPKEPKRAEVKSTQ----VKVRRFFRPDDISA--EKAYCSDIREV 1019
            +G   Y++          E K  E    +    V VR+  R  D+ +        D R +
Sbjct: 614  IG---YII----------EAKPMECSGKEHVGYVTVRKVGRIVDLISILPSNIPHDERHL 660

Query: 1020 YYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSL-------- 1071
            + ++ET  + +E +  +C V                        + P + SL        
Sbjct: 661  FLTDETQKVSIEDL--RCVV------------------------YAPCRKSLEGRYTLDE 694

Query: 1072 --KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE----------DELEVEKQGGASQEN 1119
              K    H  L Y+   L+  +   R + KC E              L +EKQ     E 
Sbjct: 695  WVKLSSDHFYLEYNFPRLERNSWRDRVEVKCEEHRVCTTCWKEKLHNLRLEKQFLKEMEK 754

Query: 1120 H-LATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
              L TLD+FAG  G S+GL + SG      AIE    A +  K N P+++ +IN C    
Sbjct: 755  KPLKTLDVFAGVLGYSKGLSEGSGCMEITHAIEISPSAAQTAKRNSPKTV-VINQC---A 810

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
             AV +    + +    +   +L  S ++  I +LP PG  D I  G PCQ  S +N + +
Sbjct: 811  NAVFQYAKKSHEGFQVAPPVQLWDSKEK--IPSLPPPGSFDVIVIGFPCQAHSALNMYKK 868

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV--SFNKGQT-------------FRL 1282
            +  S V+  ++L  +S+  Y   R   LENV  F+    N  Q               ++
Sbjct: 869  A--SDVKNNLVLNAISYIQYMGARIVYLENVMGFMRTPLNARQASPYKVQGGIEMGALKV 926

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             + +LL+MGYQ+RF  L+AG +G  Q R+R  + AA P   LPE P+P H F + +L + 
Sbjct: 927  LIRALLDMGYQLRFAALQAGHYGTPQGRERFILVAALPGTQLPELPQPTHAFPSTQLGLK 986

Query: 1343 L---SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPA---VGNGA---------------- 1380
            L    +      +R+    AP   +T  D+IGDL     V  GA                
Sbjct: 987  LHYGGEEKLIKPIRTAPGTAPHHPVTTEDSIGDLAPFDWVAPGARARPRMDEKGRPVKVI 1046

Query: 1381 ------SKTI-----MEYQNDPVSWFQ---KRIRGNMAVLTD--HISKEMNELNLIRCQK 1424
                  SKT        Y   P + +Q   +++R +   L+D  H +K      + R  K
Sbjct: 1047 VCDNRESKTCGVDEDEPYHTKPRTRYQMEMRQVRESTRPLSDLQHFTKAFKPEVVRRVTK 1106

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            IP+R GA                          +  KR  + K  + R+  +G F T +T
Sbjct: 1107 IPRRDGA--------------------------SVGKRGYKVK-TYARVSRKGFFHTIVT 1139

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS-IQHKHRQIGNAVPPTLAFA 1543
            +  P  K     H   +RIL++RE AR+QGFPD + F  + ++  HR IGNAVP  L  A
Sbjct: 1140 NISPTAKQSSVIHYIDNRILSIRELARAQGFPDDFVFVANKVETIHRLIGNAVPIPLGKA 1199

Query: 1544 LGRKLKEA 1551
            LGR+L++A
Sbjct: 1200 LGRELRKA 1207


>gi|159477138|ref|XP_001696668.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158282893|gb|EDP08645.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1263

 Score =  189 bits (481), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 159/312 (50%), Gaps = 53/312 (16%)

Query: 1140 SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTS--EAA 1197
            SG+SST WA+E++  A +A+  N+P + +L+ +CN +L+  M + G ++ CV     EA 
Sbjct: 719  SGVSSTLWAVEFDANAAKAYTENNPHTEVLVGDCNTLLQEAMARAGQSKYCVVARGREAE 778

Query: 1198 ELAASLD--------------ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            E     D                    LPLPG+V+ + GGPPCQGFSG+NR   S  +  
Sbjct: 779  EGTGKADPAAAASCTSAAEPSPPAAPRLPLPGEVELLVGGPPCQGFSGLNRHAGSEKAVR 838

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT----------------------FR 1281
               ++ ++LS+ D+++PRYF+LENV  F  +   Q                       F+
Sbjct: 839  NNSLVGSYLSYCDFYRPRYFILENVMGFTFYKPVQPTEGSHKSRQRRRRSKSSPSVSYFK 898

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA----- 1336
            L L +LL+MGYQVRFG L AG +GV QSRKR FI AA P + LP WP PMH F       
Sbjct: 899  LALRTLLDMGYQVRFGALNAGNYGVPQSRKRMFIIAALPEEVLPNWPRPMHSFRVAAEAG 958

Query: 1337 ---------PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
                     P + +     Y   A +  A G P RA+TVRD IG+LP +  G        
Sbjct: 959  SNREGQQDQPPIPVPGGMYYANGAGKCLA-GTPLRAVTVRDAIGNLPPITPGTKGDPAVP 1017

Query: 1388 QNDPVSWFQKRI 1399
               P+S FQ+R+
Sbjct: 1018 LPRPMSAFQRRL 1029



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 2/87 (2%)

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPD--QDRILTVRECARSQGFPDSYQFHGSI 1525
            G +GRL   G F T+IT P+     G   HPD  Q R ++VRE ARSQGFPD + F G  
Sbjct: 1152 GFYGRLSHSGYFRTAITTPRVESSTGWSLHPDTAQQRSVSVRELARSQGFPDRHTFGGRT 1211

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAV 1552
               +RQ+GNAVPP LA ALG +L++A+
Sbjct: 1212 DACYRQVGNAVPPPLALALGLQLRQAL 1238


>gi|403413292|emb|CCL99992.1| predicted protein [Fibroporia radiculosa]
          Length = 671

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 198/435 (45%), Gaps = 111/435 (25%)

Query: 1207 VINNLPLPGQVDFINGG------------------PPCQGFSGMNRFNQSTWSKVQCEMI 1248
            ++ ++P PG+VDFI GG                  PPCQ FSGMN + ++    ++  ++
Sbjct: 243  LLPDMPKPGEVDFIYGGNYCAFILIDAIVICSFTGPPCQSFSGMNHYKRA--DDIRNTLV 300

Query: 1249 LAFLSFADYFQPRYFLLENV--------------RNFVSFNKGQTFRLTLASLLEMGYQV 1294
               LS+ +++QP YFLLENV              R  V   K    +  L +L+ +GYQV
Sbjct: 301  CNMLSYVEFYQPLYFLLENVTGLLFYPLNGRQEGRAIVGGVKMGVVKFILRTLVSLGYQV 360

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH-------VFAAPELKIM----L 1343
            RF +L+AG +G  Q RKR   W A     LPE+P P H        F  P   I+     
Sbjct: 361  RFKVLQAGQYGSPQDRKRVIFWGAKQGLPLPEFPLPTHSFPRGVQAFKLPTGDILRPVTR 420

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLP-------------------AVGNGASKTI 1384
            SD+   ++     + AP   +TV + + DLP                   ++    +  I
Sbjct: 421  SDHSATTSKSMRLDFAPLLPVTVNEALSDLPPFDWINPFVSLRPTSQQLDSIQTRLAAGI 480

Query: 1385 MEYQ------------ND-------PVSWFQKRIRGNMAVLTDHISKEMNELNLI-RCQK 1424
              +             ND       P++ +Q+ IR   + L  H        +++ R   
Sbjct: 481  RRFDALTSPHSTYPGFNDATPYLTLPMNSYQEWIRQGSSSLVKHQYTRRFAASVVERVLN 540

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            +P  P AD  DLP  ++++S                     W+G+ GR+D  G F T++T
Sbjct: 541  VPFGPEADHTDLP-HQLRIS-------------------RMWQGVCGRIDENGFFGTALT 580

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-------SIQHKHRQIGNAVP 1537
               P G+ G   HP+Q RI+TVRECAR+QGFPD Y+FH         +  +HRQIGNAVP
Sbjct: 581  TVMPTGQCGKLLHPNQKRIVTVRECARAQGFPDWYEFHSINMKAPDVVADQHRQIGNAVP 640

Query: 1538 PTLAFALGRKLKEAV 1552
              LA ALG+ L +A+
Sbjct: 641  VPLALALGKALGKAL 655


>gi|297837287|ref|XP_002886525.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332366|gb|EFH62784.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 732

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 174/361 (48%), Gaps = 53/361 (14%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQS--TWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NRF          +   +  F+   DY +P+Y L+ENV
Sbjct: 350  LPLPGDVHIVCGGPPCQGLSGFNRFRNKDKPLQDEKNNQVTVFMDIIDYLKPKYVLMENV 409

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F KG   R  +A L+   YQ R GI+ AGA+GV Q R R F+W A P +      
Sbjct: 410  VSLLGFAKGFVGRYAVARLVNKNYQARLGIMAAGAYGVPQCRYRVFLWGAQPSE------ 463

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
                     ELK+   +N     +++        A+T+ D   DLP V N   +  + Y 
Sbjct: 464  ---------ELKV--GNNRSDLQLKT--------ALTLGDATSDLPEVTNFEEREAINYD 504

Query: 1389 NDPVSWFQKRI--------------RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWH 1434
             +P + FQK I                 + +L DH   +MN+ +  R   I K+ GA + 
Sbjct: 505  IEPETEFQKFISLPRADTLISNGEEESQLRILYDHQPLQMNKDDYQRACNISKKKGAYFT 564

Query: 1435 DL-----PDEKVKLSTGQVVDLIPW---CLPNTA--KRHNQWKGLFGRLDWEGNFPTSIT 1484
            DL      D+ V++       ++P     +PN A   R  + K  FGRL ++    T +T
Sbjct: 565  DLGGVVFEDKTVRIDPSVERVILPSGKPMVPNYAITYRDGKSKKPFGRLWYDEIINTVVT 624

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
              QP  +     HP Q+R+L+ RE AR QGFPD Y+ +G +  K+ Q+GNAV   +  AL
Sbjct: 625  RAQPHNQC--VLHPKQNRVLSARENARLQGFPDCYRLYGPVDEKYIQVGNAVAVPVGVAL 682

Query: 1545 G 1545
            G
Sbjct: 683  G 683



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 51/189 (26%)

Query: 996  KVRRFFRPDDISAEKA---YCSDIREVYYSEETHLIFVEAIAGKCEVRK----------K 1042
            + + F+R +D   +     Y  + R V+ S       +  I  K  + K          +
Sbjct: 66   RAQLFYRAEDTVIQDLAGEYLQEKRRVFLSNVEADYSLNLIVSKVHIIKLPAKILLENEE 125

Query: 1043 NDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIE 1102
             DIPAC+    +   +  EHL                   +  S+D+E ++       +E
Sbjct: 126  RDIPACDF--FYDMRYNLEHL-------------------TFSSVDNEISN-------VE 157

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGE 1157
            G D   V   G  ++E ++  LD+++GCG +S GL      SG++  TKWA++    A E
Sbjct: 158  GNDSNNV---GSCNKEKYM--LDLYSGCGAMSTGLCMGASLSGVNLITKWAVDNNSFACE 212

Query: 1158 AFKLNHPES 1166
            + KLNHPE+
Sbjct: 213  SLKLNHPET 221


>gi|179506952|gb|ACB86652.1| EagI methylase [Pantoea agglomerans]
          Length = 401

 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 214/445 (48%), Gaps = 68/445 (15%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N + +LD+FAG GGL+ GL  +G  S  +A E      E +  NHP + M++ +    +R
Sbjct: 3    NKMISLDLFAGAGGLTCGLDMAGFQSI-FANELVPVYAETYSKNHPNAEMVVGD----IR 57

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPL-PGQVDFINGGPPCQGFSGMNRFNQ 1237
            A+ E                       N++ +L L  G++D + GGPPCQGFS       
Sbjct: 58   AIAE----------------------SNLMKSLGLKAGELDLLAGGPPCQGFSINAPIR- 94

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
             T    +  +   +L  A+  +P+  L+ENV   VS  KG         L  MGY V   
Sbjct: 95   -TLDDTRNHLFKDYLRVAEVLKPKAILIENVPGIVSLGKGTVVEQIYKELNRMGYSVAHK 153

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP-------MHVFAAPELKIMLSDNYQYS 1350
            IL AG +GV Q R R    A   H     +PEP        +   + EL   +   +   
Sbjct: 154  ILFAGHYGVPQMRFRTIFIAIYGHGKSISFPEPEYNAKAVANFAGSKELCFQVPPLFADQ 213

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAV--GNGASKTIMEYQNDPVSWFQKRIRGNMA-VLT 1407
             +  T         TV D I DLP +  GNG+++++  Y + P S +QK +R +   ++ 
Sbjct: 214  LIPHT---------TVWDAISDLPPITGGNGSNESV--YLSQPKSDYQKVLRQDSPNIIY 262

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            +H   ++ ++NL R + IP+  G  W D+P E           L+P  L   A+R +  K
Sbjct: 263  NHECAKLGKVNLDRLKHIPQ--GGSWRDIPFE-----------LLPDGL-KRARRSDHTK 308

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
              +GRL  +G   T +T   P    G  FHP QDR+L+VRE AR Q FPDSY F G++  
Sbjct: 309  -RYGRLHPDGLCSTILTKCDP--HWGSFFHPTQDRVLSVREAARIQSFPDSYVFKGNLTQ 365

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAV 1552
            ++ Q+GNAVPP +A A+G ++ + +
Sbjct: 366  QYEQVGNAVPPLMARAIGLEIAKMI 390


>gi|111185554|gb|AAI19484.1| Dnmt1 protein [Mus musculus]
          Length = 197

 Score =  187 bits (475), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 119/177 (67%), Gaps = 18/177 (10%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L TLD+F+GCGGLSEG  Q+GIS T WAIE  +PA +AF+LN+P + +   +CNV+L+ V
Sbjct: 36   LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLV 95

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M              A E+  SL +     LP  G V+ + GGPPCQGFSGMNRFN  T+
Sbjct: 96   M--------------AGEVTNSLGQR----LPQKGDVEMLCGGPPCQGFSGMNRFNSRTY 137

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
            SK +  ++++FLS+ DY++PR+FLLENVRNFVS+ +    +LTL  L+ MGYQ  FG
Sbjct: 138  SKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFG 194


>gi|343427737|emb|CBQ71263.1| related to Cytosine-specific methyltransferase [Sporisorium reilianum
            SRZ2]
          Length = 768

 Score =  186 bits (473), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 153/485 (31%), Positives = 216/485 (44%), Gaps = 91/485 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  ++I  G GGLS GL  SG   TK+AI+ +  + + F+ +HP++ +            
Sbjct: 313  LIGMEIMCGAGGLSLGLDLSGACETKFAIDADADSIKTFRSHHPQAKVF----------- 361

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLP--GQVDFINGGPPCQGFSGMNRF--N 1236
               C DA D +  + +  L+A         +P P  GQVD I+ GPPCQGFS  NR    
Sbjct: 362  ---CCDAGDALRRAISGRLSA-------QGVPFPQRGQVDVISAGPPCQGFSHRNRTAPR 411

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ----TFRLTLASLLEMGY 1292
            ++     +  ++   L + ++ QP+Y +LENV  F     G       +L +  LL++GY
Sbjct: 412  EAAQQDPRNLLVCTVLGWVEHLQPKYLILENVEGFTDSKLGGRKQGMVKLVMKCLLDLGY 471

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF---AAPELKIMLSDNYQY 1349
                G +++GA G  QSR R  + AA     LP  P P H F    A            Y
Sbjct: 472  AATCGFVQSGASGCPQSRGRFILLAARRDLVLPRLPLPTHQFLGRKANPFTWTDGTGKTY 531

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAV--------------------------------- 1376
            +A R+++  A   A+TV D IGDL                                    
Sbjct: 532  AAQRASSAAAMLPAITVSDAIGDLSRFDWKDPHQVYAGPDTIELERAQRGIKQLAVVHCQ 591

Query: 1377 GNGASKTIMEYQNDPVSWFQKRIR---GNMA-VLTDHISKEMNELNLIRCQKIPKRPGAD 1432
             NG SK  +EY   P++ FQ+R+R   G  A  ++ H +   N L + R   +  RPGAD
Sbjct: 592  ANGFSK--IEYATKPLNSFQERMRVFGGEAARTVSQHQTPGFNALAVERVVNVALRPGAD 649

Query: 1433 ---WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM 1489
               W +   +K  L  G   D           R  Q    + R+D    F   +T P   
Sbjct: 650  YDSWSEPDIDKPALLGGFRFD-----------RWQQKHFKYERIDGGLYFKALMTTPT-- 696

Query: 1490 GKVGMCFHPDQDRILTVRECARSQGFPDSYQFH---GSIQHKHRQIGNAVPPTLAFALGR 1546
              VG   HPDQ RI +VRECAR+QGFPD  +F     ++   +RQIGNAVP  LA AL +
Sbjct: 697  -AVGSMIHPDQRRIFSVRECARAQGFPDWIEFECGDANVSAAYRQIGNAVPVPLAVALAK 755

Query: 1547 KLKEA 1551
             L  A
Sbjct: 756  SLTAA 760


>gi|56695946|ref|YP_166300.1| C-5 cytosine-specific family DNA methylase [Ruegeria pomeroyi DSS-3]
 gi|56677683|gb|AAV94349.1| DNA methylase, C-5 cytosine-specific family [Ruegeria pomeroyi DSS-3]
          Length = 373

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 203/436 (46%), Gaps = 71/436 (16%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F G GGLS GL+ +G +      +  + AG+ F+  HP +  +             
Sbjct: 5    AIDLFCGAGGLSAGLEMAGFTVLA-GNDIFDAAGKTFEATHPRAKFI------------- 50

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPL-PGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
              G  ED               E+++    L PG++  + GGPPCQ +S  N  +Q    
Sbjct: 51   -PGPIEDLTI------------EHLLEVTGLKPGELTVLAGGPPCQAYSVYN--HQRGMH 95

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              +  +   +L   D  +P + ++ENV    S   G+      + L  +GY+V   +L A
Sbjct: 96   DERATLFKEYLRIVDGLRPEWIVMENVTGIYSIGGGEAVAAIKSELAALGYEVEEAVLRA 155

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R+R  ++  +        PEP H                           PF
Sbjct: 156  EEYGVPQERRR-VVFIGNRVGVPISHPEPTH---------------------GPGRSMPF 193

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
              +T++D IGDLPA+ NG +K    Y +   + +Q+++RGN  V+T+H +  + ++N+ R
Sbjct: 194  --VTIKDAIGDLPALENGEAKPDAAYLDGKPTSYQRQMRGNATVITNHAAPRLGQVNMDR 251

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
               IP  PG  W D+P            DL+P  +   AKR +  K  +GR+ W+G   T
Sbjct: 252  LPHIP--PGGSWRDIP-----------FDLLPAGM-KRAKRSDHTK-RYGRMTWDGLSCT 296

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             +T        G   HP+QDR ++VRE AR Q FPD ++FHGS   ++ Q+GNAVPP L 
Sbjct: 297  VLTKCDI--HWGAYIHPEQDRAISVREAARLQAFPDWFEFHGSRTDQYVQVGNAVPPVLG 354

Query: 1542 FALGRKLKEAVESKRS 1557
             A+G  L   ++++ S
Sbjct: 355  KAIGDHLMGLIKARSS 370


>gi|188575624|ref|YP_001912553.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv.
            oryzae PXO99A]
 gi|188520076|gb|ACD58021.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv.
            oryzae PXO99A]
          Length = 395

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 215/436 (49%), Gaps = 55/436 (12%)

Query: 1126 IFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCG 1185
            +FAG GGLSEGL+++G +S  +A E      + +  NHP + +                 
Sbjct: 1    MFAGAGGLSEGLREAGFTSL-YANEISPRYAQTYAANHPATQV----------------- 42

Query: 1186 DAEDCVSTSEAAELAASLDENVINNLP--LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            D+ D             +D   I NL     G++D I GGPPCQGFS +N   +ST    
Sbjct: 43   DSRDI----------RKVDARKIRNLLGLKRGELDLIAGGPPCQGFS-INAPKRSTEDS- 90

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L F   FQPR  L+ENV   VSF  G T    L SL ++GY     IL A  
Sbjct: 91   RNHLFREYLRFVTEFQPRAVLIENVPGMVSFEGGATLDAILESLKQLGYDADVRILYAPH 150

Query: 1304 FGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
            +GV Q+R R  I  +    D    +PEP+    AP +++  +  +    + +        
Sbjct: 151  YGVPQTRWRTIILGSRCGIDPTALFPEPLR--QAP-VRVNFTSQFAGKNLVNLPRSLELP 207

Query: 1363 A-MTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            + +TV+D IGDLP + NG   + + +Y++   + +Q+ +R     +T H +  ++++NL 
Sbjct: 208  SHVTVKDAIGDLPVLRNGEIGEPVKDYRHPVDNPYQQLMRVGSTGVTCHEAARLSKINLE 267

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R   IP  PG +W D+P+            L+P  +   A+R +  K  +GR++ +G   
Sbjct: 268  RMAHIP--PGGNWTDIPEA-----------LLPRGM-RMARRSDHTK-RYGRVNPDGLAS 312

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T +T   P    G  FH +QDR  TVRE AR Q FPD+Y F GS   ++ Q+GNAVPP L
Sbjct: 313  TILTKCDP--HWGAYFHYEQDRAFTVREAARIQSFPDTYVFCGSRVEQYEQVGNAVPPLL 370

Query: 1541 AFALGRKLKEAVESKR 1556
              A+GR +   + + R
Sbjct: 371  GAAVGRAIANVLGNVR 386


>gi|242212987|ref|XP_002472324.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728601|gb|EED82492.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1147

 Score =  183 bits (465), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 218/901 (24%), Positives = 357/901 (39%), Gaps = 243/901 (26%)

Query: 754  YKKAIVHGEVVSLGSAVLVEVDELDQLPVIYF--VEYMFE--ATGGCKL---------FH 800
            YK  IV G  V   +  L  V+ + Q     F  + YMFE   T  CK          FH
Sbjct: 368  YKSVIVDG--VKYSACYLTFVNYMIQNANFQFCQIAYMFERQETLKCKYGSKPVTRKYFH 425

Query: 801  GIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANAD 860
               +Q GS  +L  TA+   +F  N+C DL ++ I +   + +                 
Sbjct: 426  ARWLQHGSQMLLQETAHPNGLFYLNECDDLPVECIYRRCNLRVLG--------------- 470

Query: 861  KVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKESEKEKE 920
                   +E +    P++ +   + W    A  +  V    +      A  T  S+    
Sbjct: 471  ------PDEPEPIEEPSDLFFARMIWDSTQAALV-NVTDQDIQAAIGQATWTPCSDGGIS 523

Query: 921  TFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEII 980
             F +           +Y VHD+VY+ PH             +  N  L  + + QL+ +I
Sbjct: 524  RFGI-----------DYHVHDFVYVMPH------------SSSPNAAL--FEIGQLVNLI 558

Query: 981  VPKEPKRAEVKSTQVKVRRFFRPDDISAEKA---------------------YCSDIREV 1019
            +  +    EV+       R+++  D+  +K                        SD R +
Sbjct: 559  LDADSHVLEVEV------RWYKRYDLVVQKCPDDDDDDDDDDDDDDDDTSSRVVSDNRRL 612

Query: 1020 YYSEETHLIFVEAIAGKC-----EVRKKNDIPACNAPAIFQHI-FFCEHLHDPSKGSLKQ 1073
            Y + E   I  + I GK      E R + D          QH   F   L+  +  S+ Q
Sbjct: 613  YRTREYETINADRIQGKAYVAFIESRDRRD-------EWLQHDDHFYTDLY--TNNSIAQ 663

Query: 1074 LPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGL 1133
              +   L   + S+      R+++   +E E E+ ++++G       L  L++FAG    
Sbjct: 664  --SLDDLHTLTKSIPQCLVCRQQRIDQLESEVEV-LDRKGP------LRGLELFAG---- 710

Query: 1134 SEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM--EKCGDAEDCV 1191
               L+ SG   TKWA+E+   A   F+ NH  +++   + NV+L+  +   +  + E  +
Sbjct: 711  ---LELSGFVQTKWAVEFSPGAALTFQENHTNAIVYNQDSNVLLKHALAAHEGNNPEPLL 767

Query: 1192 STSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAF 1251
            S  E        + + +  +P  G+VDFI GG                            
Sbjct: 768  SLRED-------ERHELPPMPTQGEVDFIYGG---------------------------- 792

Query: 1252 LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
                          +  R  V   K    +  + +L+ +GYQV F +++AG +G +QSR+
Sbjct: 793  -------------RQVGRAIVGGIKMGVVKFIIRALVCLGYQVHFKVVDAGHYGAAQSRR 839

Query: 1312 RAFIWAASPHDTLPEWPEPMH--------VFAAPELKIMLSDNYQYSAVRSTANG----- 1358
            R   W A     LP++P+PMH         F  P  +++    +   ++R   +G     
Sbjct: 840  RVIFWGAKQGVPLPKFPKPMHDLTKRSFHSFKLPTGEVLKPVTW---SIRHKESGQSNHQ 896

Query: 1359 -APFRAMTVRDTIGDLPA-------------------VGNGASKTI-------------- 1384
              P   +TV D I DLP+                   +G   +K I              
Sbjct: 897  CVPLLPVTVNDAIADLPSFDWVNPFNEIRPGPKDLDEIGLRLAKGIRRFDAVPSLEPRLA 956

Query: 1385 -----MEYQNDPVSWFQKRIR-GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
                 + Y + P+S +Q  IR G  A +T H ++      + R  ++P  P A+   LP 
Sbjct: 957  GFTDPVPYAHPPMSRYQLWIRQGAGAEVTHHYTRLFPARIVERVVRVPLTPNANHEGLP- 1015

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
               KL  G++ +       ++     ++  ++GR+D +  F T++T   P  KVG   HP
Sbjct: 1016 --AKLRVGRLFE-------SSGDARKRYDRVYGRIDGDQIFQTALTTVAPNSKVGRVLHP 1066

Query: 1499 DQDRILTVRECARSQGFPDSYQFHG-------SIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            +Q RILTVRECAR+QGFPD Y+FH         +  +HRQIGNAVP  L  ALG++L +A
Sbjct: 1067 NQKRILTVRECARAQGFPDKYEFHSVNTKLSDRVADQHRQIGNAVPVPLGLALGKELGKA 1126

Query: 1552 V 1552
            +
Sbjct: 1127 L 1127


>gi|389749172|gb|EIM90349.1| S-adenosyl-L-methionine-dependent methyltransferase [Stereum hirsutum
            FP-91666 SS1]
          Length = 1217

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 203/821 (24%), Positives = 319/821 (38%), Gaps = 159/821 (19%)

Query: 806  RGSHTVLGNTANEREVF-LANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDR 864
             GS TVL +TA+ + +F +   C D+ L  I Q     IR +  G +             
Sbjct: 463  HGSQTVLRDTAHPQILFHMERSCGDVLLASIYQKC--HIRHLLPGQE------------- 507

Query: 865  ARAEERKKKGLPTEYYCKSLYWPERGAFFILPVD---SMGLGVGSCH----ACGTKESEK 917
                   +  +  ++Y     W +    F+   D   S  L V   H    +CG  + ++
Sbjct: 508  -PPMPDSRSAVCNDFYLSPRIWSQDDCGFVGLSDTEVSQALAVCDLHKLCLSCGQSQLQE 566

Query: 918  EKETFKVHSKTSFVYGTAEYFVHDYVYI---SPHHFTWDKAEGETFKA----GRNVGLKP 970
            +    +        +GT EY + D+VY+   S     +D A+ +  K      R+ G++ 
Sbjct: 567  QAAEVQFSPGMFSQFGT-EYHIGDFVYVRSKSNPDVLFDLAQVKRIKGTPDRSRSHGVQ- 624

Query: 971  YVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFV 1030
             V  QLL +                 VRR  R  +   +++Y  D R ++ ++ +  +  
Sbjct: 625  -VTIQLLYL-----------GRVDKIVRRVSRGKEFE-QRSYVQDERYLFLTDFSDTVDS 671

Query: 1031 EAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHD-PSKGSLKQLPAHIKLRYSSGSLDS 1089
              I+GKC V  K+          +   F+     D P   + + L       +  G  D 
Sbjct: 672  SRISGKCFVIHKDSTHDLQTWLSYDDHFYVSQCGDSPLVQTFEAL-------HDIGPEDV 724

Query: 1090 EAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAI 1149
            E        K ++G    E   Q           +++FAG GG S GL +      + AI
Sbjct: 725  ETC-LSCYNKHLDGLSHHEKLLQSHEPCRG----MELFAGAGGFSTGLNKLPSIHIQHAI 779

Query: 1150 EYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVIN 1209
            E +      +K NHP++                 C  + D +  + A      LD    +
Sbjct: 780  EMDASCSLTYKKNHPDTFF--------------HCHSSNDLLQKAIAGTNTLELD----H 821

Query: 1210 NLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVR 1269
             +P PG +D I  G PCQ +SGMN  +       + E++   LS+ D+++P  F++ENV 
Sbjct: 822  PMPQPGDIDIIVAGLPCQSYSGMN--HNKDPDDPRNELVANMLSYVDWYRPPIFVMENVF 879

Query: 1270 NFVSFNKGQ--------------TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI 1315
              + F  G                  L    L  +GYQV   +L A  +G  Q R+R  I
Sbjct: 880  GILHFPLGGKKKGYRIVDGKPQGVIMLIFRVLTALGYQVHIALLHAPHYGSPQDRRRVII 939

Query: 1316 WAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN------GAPFRAMTVRDT 1369
             A+ P   LP++P P HVF     K  L  N     V           GAP R++ + + 
Sbjct: 940  MASLPGVPLPKFPVPTHVFVPRAHKFSLCYNQVLHTVTRAHESQDHYYGAPLRSVRLGEA 999

Query: 1370 IGDLP----------------------AVGNGASKT---------IMEYQNDPVSWFQKR 1398
            I DLP                      A+    SKT           +Y  +P + +Q+ 
Sbjct: 1000 ISDLPRFHWADPRASKKSRQREDDGVPALDAIPSKTSSPYVGFQIPTKYAKEPQNRYQRE 1059

Query: 1399 IRGNMAVLTDHISKEMNELNLI-RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
            +R     L  +       +N++ R   IP RP  + HDLP                W   
Sbjct: 1060 MREGSGDLVRYQYTPRFGVNVVERSVNIPMRPNVNHHDLPK---------------WL-- 1102

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD 1517
                +H      +GRLD    + T++T   P        HP+Q RILTVRE AR QGFPD
Sbjct: 1103 QFESKHTT----YGRLDASQYYATAMTTFTPNSSGSRLLHPNQRRILTVREVARGQGFPD 1158

Query: 1518 SYQF-------HGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             Y+        +  I+ + +Q+GNAVP  LA A+G  ++E+
Sbjct: 1159 DYELLSVETTPNKVIKDQLKQLGNAVPMPLARAIGGSIQES 1199


>gi|153868905|ref|ZP_01998633.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152074513|gb|EDN71359.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 418

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 205/433 (47%), Gaps = 62/433 (14%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLS GL+ +G     +A E E      +K NHP + ++I             
Sbjct: 34   VDLFAGAGGLSCGLEMAGFHPL-FANEIEPVYANTYKHNHPNTDLVI------------- 79

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD     +++    L               G++D + GGPPCQGFS +N   +S     
Sbjct: 80   -GDVRQMCASTLRERLGVK-----------QGEIDLLAGGPPCQGFS-INAPIRS-LDDD 125

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   ++S A    P+  L+ENV   +S  KG       + L ++GY+V   IL AG 
Sbjct: 126  RNYLFREYISVAQELLPKAILIENVPGIISLGKGTVVEKIYSELEQLGYKVNHRILFAGH 185

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMH-------VFAAPELKIMLSDNYQYSAVRSTA 1356
            +GV Q R R    A    D   ++PEP++          A EL + +   +  S    T 
Sbjct: 186  YGVPQMRFRTIFLAIHLPDVEIKFPEPLYNAKAVANFTGAKELCLDVLPLFSQSLKPQT- 244

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND-PVSWFQKRIRGNMAVLTDHISKEMN 1415
                    +V D I D+P + +G     ++Y +  P S +QK +R     + +H    + 
Sbjct: 245  --------SVWDAISDMPKIESGEKNEKIKYGSPYPKSEYQKILRNGSDYVYNHNCNNLG 296

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            ++NL R + IP+  G  W D+P E           L+P  L   A+R +  K  +GRLD 
Sbjct: 297  QINLDRLKHIPQ--GGSWRDIPFE-----------LLPAGL-KRARRSDHTK-RYGRLDP 341

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
             G   T +T   P    G  FHP QDR+++VRE AR Q FPDSY F GS+  ++ Q+GNA
Sbjct: 342  NGLCSTILTKCDP--HWGSFFHPTQDRVISVREAARIQSFPDSYHFTGSVTQQYEQVGNA 399

Query: 1536 VPPTLAFALGRKL 1548
            VPP +A+ +G+ +
Sbjct: 400  VPPLMAYEIGKTI 412


>gi|242087283|ref|XP_002439474.1| hypothetical protein SORBIDRAFT_09g007390 [Sorghum bicolor]
 gi|241944759|gb|EES17904.1| hypothetical protein SORBIDRAFT_09g007390 [Sorghum bicolor]
          Length = 1441

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 185/382 (48%), Gaps = 64/382 (16%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCE---MILAFLSFADYFQPRYFLLENVRNF 1271
            G VD I GGPPCQG SG NR N+   +   CE    I+ F+    + +P+Y  +ENV + 
Sbjct: 1049 GDVDVICGGPPCQGISGYNR-NREFDAPFNCERNKQIIVFMDVMQFLKPKYIYMENVLDI 1107

Query: 1272 VSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPM 1331
            + F      R  L+ L+ M YQ + G++ AG +G+ Q R R F+        LP +P P 
Sbjct: 1108 LKFADATLARYALSRLVSMHYQAKLGVMAAGCYGLPQFRMRVFL-------KLPPFPLPT 1160

Query: 1332 HVFAAPELKIMLSDNYQYSAVRSTA---NGAPF---RAMTVRDTIGDLPAVGNGASKTIM 1385
            H       + ++ +    +  R+     +  P    + + + D + DLP V NG  +  M
Sbjct: 1161 H-------EAIVKNGCPLAFERNLVGWPDSMPMQLEKPIVLEDALSDLPEVENGEKREEM 1213

Query: 1386 EYQNDPVSWFQKRIRG---------------NMAVLTDHISKEMNELNLIRCQKIPKRPG 1430
             Y   P + FQ+ IR                + + L DH  + ++  N +R  +IPK+ G
Sbjct: 1214 LYMKGPQTEFQRYIRSFNSEVLGSRAHVIKVSKSKLFDHRPRALDVDNYLRVLQIPKKKG 1273

Query: 1431 ADWHDLP---------------DEKVKLSTGQ--VVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            A++ DLP                E++ L +G   VVD +       A ++ +    +GRL
Sbjct: 1274 ANFRDLPGVIVGPDNIARLDPTKERILLPSGNPLVVDCV------LAYKNGKSLRPYGRL 1327

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             W+    T +T P     +    HP QDR+LT+RE AR QGFPDS++F G+++ ++RQIG
Sbjct: 1328 WWDEVVGTVLTCPN--AHMQALIHPAQDRLLTIRESARLQGFPDSFRFRGTVKDRYRQIG 1385

Query: 1534 NAVPPTLAFALGRKLKEAVESK 1555
            NAV   +  ALG  L  A  +K
Sbjct: 1386 NAVAVPVGRALGYALAMAYLNK 1407



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 29/208 (13%)

Query: 969  KPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE-KAYCSDIREVYYSEETHL 1027
            KP+ + +LLE                  V+ FFR +D   E +A   D R ++YS+    
Sbjct: 718  KPHYIGRLLEFF------ETTADEYYFTVQWFFRAEDTVMEDQAQSHDPRRLFYSDLKDD 771

Query: 1028 IFVEAIAGKCEVRKKNDIPACN-APAI---FQHIFFCEHLHDPSKGSLKQLPAHIKLRYS 1083
              ++ I  K  +   +  P+ N  P +   F + +  ++  D S  S  ++         
Sbjct: 772  NLLDCIVSKVTIMPVS--PSLNEKPRLIPSFHYYYDMKYSLDYSTFSTMEM--------- 820

Query: 1084 SGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL----QQ 1139
             G  +    S       ++  D  E +K    S+   L+ LD++ GCGG+S GL    + 
Sbjct: 821  -GDPNDTLHSHYTSSNNVKRIDFTEKQKSP-TSEMRELSLLDLYCGCGGMSTGLCLGARG 878

Query: 1140 SGIS-STKWAIEYEEPAGEAFKLNHPES 1166
             G++   +WA++ +E A E F+LNHPE+
Sbjct: 879  GGVNLVARWAVDGDEVACETFRLNHPET 906


>gi|84686808|ref|ZP_01014695.1| DNA methylase, C-5 cytosine-specific family protein [Maritimibacter
            alkaliphilus HTCC2654]
 gi|84665239|gb|EAQ11718.1| DNA methylase, C-5 cytosine-specific family protein [Rhodobacterales
            bacterium HTCC2654]
          Length = 336

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 181/346 (52%), Gaps = 26/346 (7%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G++D + GGPPCQGFS +N   +S     +  + L FL F D F+P+  L+ENV   VSF
Sbjct: 6    GELDLVAGGPPCQGFS-INAPKRSA-DDDRNSLFLEFLRFVDEFEPKAVLIENVPGLVSF 63

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWA--ASPHDTLPEWPEPMH 1332
              G T +  L +L   GY     IL A  FGV Q+R R  I        D L  +PEP  
Sbjct: 64   EGGGTLQAILLALGHHGYSADVKILYAPHFGVPQTRWRTVIIGIRGDQADPLRAFPEP-- 121

Query: 1333 VFAAPELKIMLSDNYQYSAVRSTANGAPFRA-MTVRDTIGDLPAVGNG-ASKTIMEYQND 1390
            V  AP L++  + N++   + +        + ++VRD I DLPA+ NG   K    Y++ 
Sbjct: 122  VRNAP-LRVNFTSNFEGKNIVALPTNLELPSFVSVRDAIDDLPALANGEIGKERKNYRSG 180

Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
            P + FQ  +R     + +H +  + E+N+ R   IP  PG +W D+P+           D
Sbjct: 181  PQNDFQVAMRNGSDGVLNHEAPRLGEINIKRMSFIP--PGGNWTDIPE-----------D 227

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            L+P  +   A+R +  K  +GR+  +G   T +T   P    G  FH +QDR  TVRE A
Sbjct: 228  LLPRGM-RRARRSDHTK-RYGRVAPDGLASTILTKCDP--HWGAYFHYEQDRCFTVREAA 283

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            R Q FPDSY+F GS   ++ Q+GNAVP  LA A+GR ++  +E  R
Sbjct: 284  RIQTFPDSYRFVGSRVEQYEQVGNAVPSLLAAAIGRSIRGVLEELR 329


>gi|443899025|dbj|GAC76358.1| hypothetical protein PANT_20d00075 [Pseudozyma antarctica T-34]
          Length = 758

 Score =  180 bits (457), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 208/488 (42%), Gaps = 104/488 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  ++I  G GGL+ GL  SG   T +A++ +  A E F+ +HP++ +            
Sbjct: 310  LRGMEIMCGAGGLTLGLDLSGACETTFAMDADAHAVETFRRHHPQAKV------------ 357

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
               C DA D         L  ++  N  N LP PG VD I  GPPCQGFS   R NQ T 
Sbjct: 358  --SCVDAGDA--------LQQAMSPNAENALPRPGDVDVIAAGPPCQGFS---RKNQ-TA 403

Query: 1241 SKVQCE------MILAFLSFADYFQPRYFLLENVRNFVSFNKGQ----TFRLTLASLLEM 1290
            ++   E      ++   L + ++ QP+YF+LENV  F +   G       +L LA LL++
Sbjct: 404  ARDAAEKDPRNLLVCTVLGWVEHLQPKYFILENVEGFTASKLGGHDQGMVKLVLAVLLKI 463

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
            GY   +G +++GA+G +QSR R  + AA    TLP+ P+P H F           +    
Sbjct: 464  GYAATWGFVQSGAYGCAQSRGRFILLAAKQELTLPKLPQPTHDFQGRSSSGFWWSDASGQ 523

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLP-------------------------------AVGNG 1379
                  +     A++V DTI DL                                A G  
Sbjct: 524  HTSRVPSMPILPALSVADTIDDLAVFDWRDPHQTYEGPDAIELERERAGIAQLEVASGTP 583

Query: 1380 ASKTIMEYQNDPVSWFQKRIRGN----MAVLTDHISKEMNELNLIRCQKIPKRPGADWHD 1435
                   Y   P + +Q+R+R      M     H +   + + + R   +   PGA +  
Sbjct: 584  TGFASTPYATPPNTSYQQRMRAFGGKIMTRTRQHQTSGYSAIMVERVVNVALEPGATYDS 643

Query: 1436 LPDEKVKLSTGQVVDLIPWCLPNTAK-------RHNQWKG---LFGRLDWEGNFPTSITD 1485
                              W LP+  K       +  +W+     F RLD +G F    T 
Sbjct: 644  ------------------WSLPSVNKPALLSLDQTERWRNEHFKFERLDSDGYFKILTTK 685

Query: 1486 PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF--HGSIQHKHRQIGNAVPPTLAFA 1543
             +  G +    HP Q R+LTVRECAR+QGFPD   F    ++Q  ++QIGNAVP  L  A
Sbjct: 686  VRGEGSM---LHPTQRRLLTVRECARAQGFPDWVDFACDTNLQEAYKQIGNAVPVPLGVA 742

Query: 1544 LGRKLKEA 1551
            +GR +  A
Sbjct: 743  IGRSIVTA 750


>gi|384921047|ref|ZP_10021038.1| DNA-cytosine methyltransferase [Citreicella sp. 357]
 gi|384465060|gb|EIE49614.1| DNA-cytosine methyltransferase [Citreicella sp. 357]
          Length = 374

 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 204/432 (47%), Gaps = 70/432 (16%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F G GGLSEGL+Q+G S      + +E AG  F   HPE+  L  +   I       
Sbjct: 2    IDLFCGAGGLSEGLRQAGFSILA-GNDVDEHAGNTFAATHPEAAFLPGSIYDI------- 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
               A+D +        A  L +          ++D + GGPPCQG+S  N  +Q      
Sbjct: 54   --TAQDFLK-------ATGLKKE---------ELDCLAGGPPCQGYSVYN--HQRGMHDE 93

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   +   P++ ++ENV   +S  +G+ F+  LA +  +GY V   IL A  
Sbjct: 94   RSHLFKEYLRIVEGLMPKWLVMENVTGIMSAGEGEAFQAVLAGIRGLGYDVEAKILRAED 153

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  ++  +   +   WP+  H      LK                   PF  
Sbjct: 154  YGVPQERRRV-VFIGNRIGSPIIWPQKTH---GEGLK-------------------PF-- 188

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             T++D + DLP + NG  K + +Y+  P S +Q+ +R    ++ +H + ++  +N+ R +
Sbjct: 189  TTIKDALSDLPELLNGEDKGVGKYKTRPTSEYQRELRKGSQLVHNHSASKLGAINIERMR 248

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP+  G  W D+P            DL+P  +   AKR +  K  +GR+ W+G   T +
Sbjct: 249  YIPQ--GGSWRDVP-----------YDLLPAGM-KRAKRSDHTK-RYGRMQWDGQSCTVL 293

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+QDR +TVRE AR Q FPD + F G    +  Q+GNAVPP L   
Sbjct: 294  TKCDI--HWGAYIHPEQDRSITVREAARIQSFPDWFHFTGPRTEQFVQVGNAVPPLLGRC 351

Query: 1544 LGRKLKEAVESK 1555
            +G  L +A +++
Sbjct: 352  IGSALVKATKAQ 363


>gi|393213319|gb|EJC98816.1| S-adenosyl-L-methionine-dependent methyltransferase [Fomitiporia
            mediterranea MF3/22]
          Length = 871

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 211/486 (43%), Gaps = 75/486 (15%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L   D F GCG  + G   +G       +E    A    +LN P++++     N +L   
Sbjct: 387  LRIFDPFGGCGAFAMGACDAGNMKFTHTVEKNTSAAATIRLNSPDTIVYNQCANKML--- 443

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ---VDFINGGPPCQGFSGMNRFNQ 1237
                   E  VS +  + +  + D      LP P Q   +D I  G PCQ  S MNR+ +
Sbjct: 444  -------EYAVSRANGSNMTLN-DLLTGEALPAPPQREEIDCIVSGFPCQPHSRMNRYPR 495

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT---------------FRL 1282
            +T   +  E+ L  +S+ ++  P+Y L ENV  F+    G T                +L
Sbjct: 496  AT--DLVNELYLTTISWVEHLCPKYCLFENVPGFIQHRIGATQIDQHTIQGGIIQGGIKL 553

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKI 1341
            T  +L  +GYQVRF  L+A  +G  Q RKR F+WAA     LP+ P   H F A + L I
Sbjct: 554  TCRTLTALGYQVRFATLQAAHYGTPQRRKRFFLWAARTGLPLPDLPPRTHEFPATKSLAI 613

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLP--------------------------- 1374
              S+     +V      AP   +TV D I DL                            
Sbjct: 614  RCSNGDVAGSVSCETGTAPMPMVTVADAISDLKRWDWENPHKEYKETAHDRREREARRHI 673

Query: 1375 ------AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
                      G     +EY+++P + +Q R R   A    H++   N++ +     +P  
Sbjct: 674  VQVRSHPGDGGCGIGGVEYEHEPRTAYQARCRRRPASELQHVTYCFNDITIEATVNVPLE 733

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
             G+ + DL + K KL   ++  L      +   RH     +F RL+ +  F T +T+  P
Sbjct: 734  GGSSFKDL-NHKPKLWKERINPL------SANARHGYKTHMFVRLEADKCFNTIVTNIGP 786

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG---SIQHKHRQIGNAVPPTLAFALG 1545
              K     +P   R++TVRE ARSQGFPD+++F      I+  H  IGNAVP  L+ ALG
Sbjct: 787  TAKQSKVLNPWCKRLVTVRELARSQGFPDAFEFKALDLKIKTMHEMIGNAVPWPLSVALG 846

Query: 1546 RKLKEA 1551
            R+L+ A
Sbjct: 847  RELERA 852


>gi|426200066|gb|EKV49990.1| hypothetical protein AGABI2DRAFT_115056 [Agaricus bisporus var.
            bisporus H97]
          Length = 1378

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 159/618 (25%), Positives = 256/618 (41%), Gaps = 99/618 (16%)

Query: 788  YMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVP 847
            Y FE  G  KLFHG  +  GS T+L   A+ + ++L N C    +  I +   V I    
Sbjct: 580  YFFEEEGK-KLFHGQWLVHGSKTILQEAAHSKSLYLINSCASNPVASIFKKCEVRILE-- 636

Query: 848  WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV-DSMGLGVGS 906
                  +D          RAE          Y+C  L+  E  AF  LP  +   +   +
Sbjct: 637  ------RDETEPHDDQNPRAEN---------YHCGFLWDEEHAAFLNLPTKEEYNIAFHT 681

Query: 907  ------CHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETF 960
                  C++CG +    E E+ ++  K  F      Y ++DYVYI P             
Sbjct: 682  LPSYSPCYSCGLEAMNTEAESVRLLQK-GFSLSNVAYHINDYVYIHPP------------ 728

Query: 961  KAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDD---ISAEKAYCSDIR 1017
                ++ LK   + Q++E+  P       +   Q++VR   R +D   +  EK    + R
Sbjct: 729  PHENSLLLK---IGQIVEVSGP-------ISDIQIRVRYLERYNDTPQMEKEKKMMDNER 778

Query: 1018 EVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAH 1077
             +Y +     +  + + GKC V+   +        I++     +H     KG        
Sbjct: 779  HLYLTFRIGEVHPDQLDGKCFVQFLEE-----DGEIYEWTKHNDHFFLNQKGH------- 826

Query: 1078 IKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGL 1137
                  S   D EA       KC++   E     +        L  L++F+G GG   G+
Sbjct: 827  ------SVLFDIEAGDFDFCEKCVKTRREELARAEQLFEHNGPLRGLELFSGAGGFGTGM 880

Query: 1138 QQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197
            + S     KWA+EY   A + +  NHP + +   + + +L+  +++           +  
Sbjct: 881  ELSEFVEAKWAVEYSPVAAKTYARNHPAAKVYCQDTSRLLQHTIDE--------HQGKNP 932

Query: 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY 1257
                S D  +   +P  G+VDFI GGPPCQ FSG N   Q+    ++  M    LSF ++
Sbjct: 933  PPLQSNDNKICPPMPNRGEVDFIFGGPPCQSFSGANHHRQA--DDIRSTMPCNMLSFLEH 990

Query: 1258 FQPRYFLLENVRNFVSF-----NKGQTF---------RLTLASLLEMGYQVRFGILEAGA 1303
            +   YFLLENVR   ++      KG+           +L +  L+ +G QV++ +L+AG 
Sbjct: 991  YDADYFLLENVRGLANYPLLSEQKGRILSGGVKSGMVKLIMQCLVALGRQVQWKVLQAGQ 1050

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY-SAVRSTANG---- 1358
            +G  Q+R+R   WAA     LP+ P P++ +    +  +L    +     RS   G    
Sbjct: 1051 YGAPQNRERVIFWAAKRGLVLPKHPVPLYAWKRGAMSSLLPTGTKLPPPTRSLVPGVCHQ 1110

Query: 1359 -APFRAMTVRDTIGDLPA 1375
             AP   +TV+  IGDLPA
Sbjct: 1111 YAPLPPITVKTAIGDLPA 1128



 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 102/218 (46%), Gaps = 31/218 (14%)

Query: 1346 NYQYSAVRSTANGAP-FRAMTV--RDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
            + Q+ A RS   G P F A+    ++ +   P    G      EY+  P + FQ  +R  
Sbjct: 1162 DLQFDAQRSQVLGIPQFHAVHSGSQNELDSYPGYPYGT-----EYKTGPQNRFQMWMRNG 1216

Query: 1403 MA--VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
            M    L  H +K  +   +     +P   GAD   LP   + L  G  V+      P T 
Sbjct: 1217 MGDNKLQGHYTKRFSLRAVEATTTVPLEEGADHTSLP---LALQPGHRVE------PKTK 1267

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
            K        +GRL  +G+F  ++T   P  K     HPDQ R++TVRE ARSQGFPD+Y 
Sbjct: 1268 K------SFYGRLSNDGHFACTMTQLTPATKNARPLHPDQRRMVTVRELARSQGFPDNYV 1321

Query: 1521 FHGS------IQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            F  +         + RQIGNAVP  +A ALG++L  A+
Sbjct: 1322 FETTGTGSAIFYDQIRQIGNAVPVPMALALGKELGVAL 1359


>gi|357490109|ref|XP_003615342.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
 gi|355516677|gb|AES98300.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]
          Length = 800

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 146/482 (30%), Positives = 223/482 (46%), Gaps = 79/482 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISS-----TKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            L  LD+++GCGG+S GL Q  I S     TKW ++  + A ++ KLNHPE+         
Sbjct: 302  LKLLDLYSGCGGMSTGLCQWRILSGSDIVTKWVVDLNKDACQSLKLNHPET--------- 352

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASL-----------DENV---INNLPLPGQV--DF 1219
                  E+  D  D        E    L           D+++   IN L    ++  DF
Sbjct: 353  --EVRNEEEDDVHDVRYDDANKETGPGLYIKVSWKGYNYDKDIWEPINGLSNCKEMIKDF 410

Query: 1220 INGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            +  G   +   G NRF    +     + + ++ ++    Y QPR+ L+ENV N + F +G
Sbjct: 411  VTRG--FKSIRGFNRFRNFANPLDDEKNKQLMVYMDIVQYLQPRFTLMENVVNLLRFLEG 468

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH----- 1332
               R  L  L++M YQ R GIL A A+G+ Q R R F+W  +P + L ++P   H     
Sbjct: 469  FLGRYALGRLVQMNYQSRLGILAARAYGLRQFRLRVFLWGGTPSENLHQFPLRTHDVIER 528

Query: 1333 VFAAPELKIMLSDNYQYSAVRSTANGAPF-RAMTVRDTIGDLPAVGNGASKTIMEYQNDP 1391
             F   E +  L          S  + A   + + + D I DL ++ N  S+  M+Y    
Sbjct: 529  GFVPVEFEGCL-------VAYSEGHSAQLQKKLELNDAISDLFSIENNESRDDMDYCGPL 581

Query: 1392 VSWFQKRIR--------GNM------AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            +  FQK IR        G++      ++L D  S EMN  +     +IPKR GA + DLP
Sbjct: 582  LIDFQKFIRLSQSEILGGSIKKKSPKSMLHDRRSYEMNFDDYQCACRIPKRKGACFRDLP 641

Query: 1438 -----DEKVKLSTGQVVDLIPW---CLPNTAKRH--NQWKGLFGRLDWEGNFPTSITDPQ 1487
                 ++KVKL+     + +      +PN A           F R+ W+   PT +T  +
Sbjct: 642  CVRMQNKKVKLNPDVKREFLASGKPLVPNYAITFVCGTSPLPFARIWWDKTVPTVVTRAE 701

Query: 1488 PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            P  +     HP+QDR+L++R  AR QGFPD Y+  GS + ++ Q+GNAV    A  +GR 
Sbjct: 702  PHNQ--KILHPEQDRVLSIRGNARLQGFPDFYKLCGSSKERYIQVGNAV----AVPVGRA 755

Query: 1548 LK 1549
            L+
Sbjct: 756  LR 757


>gi|302690426|ref|XP_003034892.1| hypothetical protein SCHCODRAFT_255903 [Schizophyllum commune H4-8]
 gi|300108588|gb|EFI99989.1| hypothetical protein SCHCODRAFT_255903 [Schizophyllum commune H4-8]
          Length = 1412

 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 143/492 (29%), Positives = 203/492 (41%), Gaps = 112/492 (22%)

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEA 1196
            ++ SG   T  A++YE  A + +K NHP + +L  + N +L+AV    GD          
Sbjct: 942  MEMSGFVDTALAVDYEPAAVDTYKKNHPYTTVLCADSNKVLKAVR---GD---------- 988

Query: 1197 AELAASLDENVINNLPLP--------GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
                +  DE      PLP          +DF+ GGPPCQ FS  N +     + ++  + 
Sbjct: 989  ---KSVKDEYNQPFPPLPKPCTADKSSSIDFVFGGPPCQSFSKANHYKDP--NDIRSFLP 1043

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR---------------LTLASLLEMGYQ 1293
            L  LSF + ++P YFLLENVR  + F  G T R               + L +L+ +GYQ
Sbjct: 1044 LNMLSFVEAYKPDYFLLENVRGLLDFRLGTTTRGMQDANECIKNSMVKIILRTLIALGYQ 1103

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
                +L+AG FGV Q+R+R     A     +P  P P H F        L+D      + 
Sbjct: 1104 ASVRVLQAGQFGVPQARERVIFLGAKLGLPMPVHPVPTHAFPKVPNTANLADGTTLVPLP 1163

Query: 1354 STANG------APFRAMTVRDTIGDLPA-------------------------------V 1376
               NG      AP   +T+ D IGDLP                                V
Sbjct: 1164 RAPNGEKGYIYAPLPPVTIEDAIGDLPPFDWVNPHEIFPSSTKDRNECKAREDAGIKQLV 1223

Query: 1377 GNGASKTIM------EYQNDPVSWFQKRIRGNM--AVLTDHISKEMNELNLIRCQKIPKR 1428
                S  ++      EY   P + +Q ++R N    VL  +     + L + R   +P  
Sbjct: 1224 ATPTSTGLVGFPRPSEYHCPPQNRYQLQMRRNSPGGVLNMYTRTYRSSL-VERVVTVPLE 1282

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
            P AD+  LP+  +    GQ                 + +G FGR   +G F T +T P P
Sbjct: 1283 PDADFRRLPE--ILQPGGQ---------------REKRRGSFGRCGLKGFFATVMTQPNP 1325

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG--------SIQHKHRQIGNAVPPTL 1540
              K     HP Q R  TVRECARSQ FPD ++F          ++    R  GNAVP  L
Sbjct: 1326 SSKGTWLLHPTQKRTYTVRECARSQSFPDDFEFDSKHSKNPETAVNDFCRIGGNAVPIEL 1385

Query: 1541 AFALGRKLKEAV 1552
            A  LG+ +  A+
Sbjct: 1386 AKKLGQSIGAAL 1397



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 31/164 (18%)

Query: 794 GGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHR 853
           GG    H      GS  +L   A+ R +FL   C D+    IKQ V VD     +G    
Sbjct: 634 GGEYQVHVQWFTHGSKMILQELAHSRGLFLLEHCDDILAPTIKQKVEVD-----FG---- 684

Query: 854 KDIANADKVDRARAEERKKKGLP--TEYYCKSLYWPERGAFFILP--------VDSMGLG 903
                      AR EER     P    Y+C  ++ PE+ +F   P         ++   G
Sbjct: 685 -----------ARGEERADDKAPDGQHYHCAHVFDPEKTSFTTAPSEKDLAQLYEAYPAG 733

Query: 904 VGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISP 947
           +  C +C  KE + E+ET K    T F +   +Y V D VY++P
Sbjct: 734 M-RCPSCCLKERDTERETLKSDGATYFSHYDEDYHVGDTVYLAP 776


>gi|302694677|ref|XP_003037017.1| hypothetical protein SCHCODRAFT_103476 [Schizophyllum commune H4-8]
 gi|300110714|gb|EFJ02115.1| hypothetical protein SCHCODRAFT_103476, partial [Schizophyllum
            commune H4-8]
          Length = 1190

 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 220/491 (44%), Gaps = 75/491 (15%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC-NV 1175
            ++  L  LD+F G G  S GL           +  + P+     + +   + + N C N 
Sbjct: 693  EKRKLRVLDVFGGVGAFSMGLADGSRCMKLTHLIEKSPSAAKTVIANFSGVQVYNQCANT 752

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASL---DENVINNLPL-PGQVDFINGGPPCQGFSG 1231
            +L  ++++     D V+      + A +   D N+    P+ PG +D +  G PCQ  S 
Sbjct: 753  VLEYMVKR----HDKVTLPSGDPVPAPMQIYDANIACPPPIKPGDIDVVVAGFPCQSHSL 808

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN---------------- 1275
            +NRF +    K    +I   LS+  + +P++   ENV  F+ +N                
Sbjct: 809  LNRFRRIGDKK--NNLIWNALSWVGFLKPKFVFFENVPGFLQYNLLPRQVSANRLEGGIE 866

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            KG   +L + +L EMGYQ+RF +++AG +G  Q R R F+ AA     LP+ P+P H F 
Sbjct: 867  KG-GLKLCVRALAEMGYQLRFCLMQAGHYGAPQHRVRFFVVAAKQGVPLPDLPQPTHDFT 925

Query: 1336 A-----PELKIMLSDNYQYSAVR--STANG-APFRAMTVRDTIGDL----------PAVG 1377
                    L ++LS N   + +R  +T NG APF+A+TV D I DL          P+  
Sbjct: 926  TIAKQYERLTLVLSKNTD-TTIRPINTQNGVAPFKAVTVADAIDDLKRFHWKHPKRPSPN 984

Query: 1378 NGASKTIME------------YQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKI 1425
            +GA                  Y +   + FQ+  R   +    H ++ +   N+ R   I
Sbjct: 985  DGAPMVACNSHSFWGYEGADLYDHVETTSFQRAARCKPSQNLQHFTRRLPLPNVERVLAI 1044

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL-FGRLDWEGNFPTSIT 1484
            PK  G D   LP +    +            P +A     +K + +GRL  +G FP   T
Sbjct: 1045 PK--GGDSRHLPRDLHYFTPSN---------PISATGRGGYKTVYYGRLHPDGFFPAITT 1093

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF----HGSIQHKHRQIGNAVPPTL 1540
            +  P  K G   H    RI+TVRE AR+QGFPD + F       I   HRQIGNAVP  L
Sbjct: 1094 NIGPTAKQGRVLHYSCGRIVTVRELARAQGFPDWFIFERLEEDDILTIHRQIGNAVPLPL 1153

Query: 1541 AFALGRKLKEA 1551
              ALGR+L+ A
Sbjct: 1154 GRALGRELRRA 1164


>gi|110288523|gb|ABB46585.2| DNA cytosine methyltransferase MET2a, putative, expressed [Oryza
            sativa Japonica Group]
          Length = 371

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 173/346 (50%), Gaps = 56/346 (16%)

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
            ++ F+    Y +P+Y L+ENV + + F  G   R  L+ L+ M YQ R G++ AG +G+ 
Sbjct: 1    MVTFMDIVAYLKPKYVLMENVVDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLP 60

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVF----AAPEL---KIMLSDNYQYSAVRSTANGAP 1360
            Q R R F+W A P   LP++P P H       AP      I+  D  Q   +++      
Sbjct: 61   QFRMRVFLWGALPTMVLPKYPLPTHNVVVRGGAPNAFSQSIVAYDETQKPTLKN------ 114

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR----------------GNMA 1404
              A+ + D I DLP V N     +MEY + P + FQ+ IR                 ++ 
Sbjct: 115  --ALLLGDAISDLPEVNNHQPNEVMEYGSSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLG 172

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDL--------------PD-EKVKLSTGQVV 1449
             L DH   ++N+ +  R Q+IP + GA++ DL              PD  +V LS+G+ +
Sbjct: 173  KLLDHQPLKLNKDDHERVQQIPVKKGANFRDLKGVRVGANNIVEWDPDVPRVYLSSGKPL 232

Query: 1450 DLIPWCLPNTAKRHNQWKGL--FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
                  +P+ A    + + L  FGRL W+   PT +T  +P  ++    HP+Q R+LTVR
Sbjct: 233  ------VPDYAMSFIKGRSLKPFGRLWWDETVPTVVTRAEPHNQI--ILHPNQARVLTVR 284

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            E AR QGFPD Y+  G I+ K+ Q+GNAV   +A ALG  L  A +
Sbjct: 285  ENARLQGFPDYYKMFGPIKEKYIQVGNAVAVPVARALGYSLGLAYQ 330


>gi|322792107|gb|EFZ16179.1| hypothetical protein SINV_13041 [Solenopsis invicta]
          Length = 269

 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 112/190 (58%), Gaps = 40/190 (21%)

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLS------------------- 1444
            ++L DH+ K M+ L   R   IP   G+DW DLP+  VKLS                   
Sbjct: 8    SILMDHMCKGMSSLVEARMSYIPTTIGSDWRDLPNIVVKLSDGTFSKKLEYLHDDPKAGR 67

Query: 1445 -------------TGQVVD--------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
                         TGQ  D        LIPWCLP+T+ RHN WKGL+GRLDW G F T+I
Sbjct: 68   NSQNGFRGVCSCCTGQPCDPTDKQFNTLIPWCLPHTSNRHNNWKGLYGRLDWNGFFKTTI 127

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T+P+PMGK G   HP + R+++VRECARSQGFPDSY+F G+I  K+RQ+GNAVPP L  A
Sbjct: 128  TNPEPMGKQGRVLHPVESRVVSVRECARSQGFPDSYRFFGTILDKYRQVGNAVPPPLGAA 187

Query: 1544 LGRKLKEAVE 1553
            +G ++++ + 
Sbjct: 188  IGHEIRKCIR 197


>gi|12229856|sp|P94147.1|MTA1_RUEGE RecName: Full=Modification methylase AgeI; Short=M.AgeI; AltName:
            Full=Cytosine-specific methyltransferase AgeI
 gi|8037880|gb|AAF71525.1|AF247972_2 AgeI methylase [Thalassobius gelatinovorus]
 gi|1695647|dbj|BAA11333.1| ageI metylase [Thalassobius gelatinovorus]
 gi|1588637|prf||2209243A AgeI methylase
          Length = 429

 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 216/471 (45%), Gaps = 82/471 (17%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            + T+D+F G GGL EG +Q+G S+  +A ++E PA   +K NHP+++     C+      
Sbjct: 1    MKTIDLFCGAGGLGEGFRQAGFSAL-YANDHETPALATYKENHPDAV-----CST----- 49

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                    D + T +  ++   L          PGQVD + GGPPCQGFS    + Q   
Sbjct: 50   --------DSIETVDPKKIREDLGVA-------PGQVDVVMGGPPCQGFS---TYGQRRD 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               + ++ + +  F + F+P+ FL+ENV   +S + G      +A    +GY      L+
Sbjct: 92   DDARNQLYVPYFGFVEEFRPKAFLIENVVGLLSMSGGAVLADMVARAEALGYAADVVTLD 151

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q R+R FI+ A+    + + P+P HV       ++L+D  Q S      +  P
Sbjct: 152  ACEYGVPQHRRRVFIFGAADGQRI-DPPQPSHV-NGKRSGVVLND--QPSLFFDGPSIQP 207

Query: 1361 FRAMTVRDTIGDLP--AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
              A+TVRD I DLP   +    ++  MEY   P + +Q+ +RGN   LT H +K M  + 
Sbjct: 208  --ALTVRDAISDLPDEVLVPRDTQKPMEYPEPPKTEYQRLMRGNSTELTHHSAKRMLGIR 265

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD-LIPWCLPNTAKR--------------- 1462
             +R   +   PG D+    +E  +L+ G + D LI   +     R               
Sbjct: 266  RLRLAML--HPG-DYGTKIEE--RLADGGLNDELIDLMMGGAGMRDAAECRTQDREKEAA 320

Query: 1463 --------------------HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQD 1501
                                   +   + RL W+    T +     M +    F HP  D
Sbjct: 321  LREVLKGGHTTPAKVMEFLDSQGFANKYRRLRWDAPSHTVVAH---MARDCSDFVHPGID 377

Query: 1502 RILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            R ++VRE AR Q FPD+Y+F GS   + RQIGNAVPP L  A+   +K A+
Sbjct: 378  RFVSVREAARFQSFPDTYRFPGSQFRQFRQIGNAVPPLLGRAMAETIKVAI 428


>gi|353236422|emb|CCA68417.1| hypothetical protein PIIN_02281 [Piriformospora indica DSM 11827]
          Length = 1109

 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 212/496 (42%), Gaps = 106/496 (21%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            Q   L  LD+F+G GGLS GL+ SG   TKWA+EY+  +   F+  HP+++M     N +
Sbjct: 645  QSGVLHCLDLFSGAGGLSLGLEASGAVQTKWAVEYDSSSAATFQQAHPDAIMFNTCINKL 704

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENV--INNLPLPGQVDFINGGPPCQGFSG-MN 1233
            L  V ++              + A  LD N   ++  P PG+VD I GGPPC+  S  + 
Sbjct: 705  LSGVQQR--------------DDAGELDRNSPQLDQFPKPGEVDIIVGGPPCRPSSAYLR 750

Query: 1234 RFNQ-------STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR-LTLA 1285
            R  +        TW      +         Y   RY    +       +  +  R LT  
Sbjct: 751  RLGKRPRSPDIQTWRNPNKSL---------YVGRRYTERGHHSGQAPTHGNEVCRFLTNV 801

Query: 1286 SLLEM--GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV-FAAPELKIM 1342
            S L +   YQVR+G+L AG  GV Q R+R F+ AA   + LP+ P+P HV   A    + 
Sbjct: 802  SYLMLIGSYQVRYGVLNAGQHGVPQIRRRVFVIAAKRGNLLPDLPQPTHVAMHATHNTVT 861

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLP---------------------------- 1374
            + +   Y+  R   N AP  A+TV D I DLP                            
Sbjct: 862  VEEGKVYTVSRRRENNAPLYAVTVGDAITDLPQWEWVNPHKLYKRTTRVKQEELERRWKH 921

Query: 1375 --------------AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                          ++      + ++Y    ++ +Q  +R     +T H +  +NEL + 
Sbjct: 922  GILAIDVKSQPISTSLPVCGPDSPLQYPLPALTNYQLLMRERSTTVTQHWTPALNELEIE 981

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL--PNTAKRHNQWKGLFGRLDWEGN 1478
            R   IP +       +PD       G  +  +P  L  P  A R  Q  G +GRLD E  
Sbjct: 982  RVCNIPFKSKRGDRVVPDHH----GGIFLLDLPSRLRRPGWADRQ-QLDGRYGRLDAEDV 1036

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH---GSIQHKHRQIGNA 1535
            F TS+                  RILT+RE ARSQGFPD   F     +++   +QIGNA
Sbjct: 1037 FATSL-----------------HRILTIREAARSQGFPDHIDFRHEDNNVKLITQQIGNA 1079

Query: 1536 VPPTLAFALGRKLKEA 1551
            VP  LA A+GR++ +A
Sbjct: 1080 VPVPLAAAVGREIAKA 1095


>gi|159477134|ref|XP_001696666.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158282891|gb|EDP08643.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1333

 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 160/330 (48%), Gaps = 63/330 (19%)

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA--- 1336
            F+L L +LL+MGYQVRFG L AG +GV QSR+R FI AA P + LP WP PMH F     
Sbjct: 975  FKLALRTLLDMGYQVRFGALNAGNYGVPQSRQRVFIIAALPEEVLPNWPRPMHSFRVAAA 1034

Query: 1337 -----------PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM 1385
                       P +++     Y  + V     G P RA+TVRD IG+LP +  G      
Sbjct: 1035 AGSNREGQQDQPFIRVP-GGKYYANGVGMRLVGTPLRAVTVRDAIGNLPPITPGTKGDPA 1093

Query: 1386 EYQNDPVSWFQKRI------------------------RGNMAVLTDHIS-KEMNELNLI 1420
                 P+S +Q+R+                             VL DH++ + ++E +  
Sbjct: 1094 VPLPRPMSAYQRRLAEAATAGWQRSADGAGYADGGVGGGAPPPVLADHVTPRVLSEFHAK 1153

Query: 1421 RCQKIPKRPGADWHDLPDE--------------KVKLSTGQVVD--LIPWCLPNTAKRHN 1464
                +P  PG D   + D+                  + GQ  +  L  W L N  KR  
Sbjct: 1154 AASLVP--PGMDIFLVKDKLKGAGDMTAAAAQQLSAATAGQTPEQYLERWKLLNNLKRRK 1211

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP--DQDRILTVRECARSQGFPDSYQFH 1522
            +  G++GRL     F T+ T    +G  G   HP  DQ R ++VRE ARSQGFPD ++F 
Sbjct: 1212 RRSGMYGRLCHTSYFRTATTK---VGVDGWSLHPDLDQQRTVSVREVARSQGFPDQHRFK 1268

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            GS+   ++Q+GNAVPP LA ALG +L++A+
Sbjct: 1269 GSVADCYKQVGNAVPPPLALALGLQLRQAL 1298



 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 220/523 (42%), Gaps = 82/523 (15%)

Query: 820  EVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANAD-KVDRARAEERKKKGLPTE 878
            E  L+   RDL+  ++ +    D+   P GH H  + A AD K+ R+        GLP  
Sbjct: 380  ETLLSLPLRDLDAAEVVK--AKDLSGRPCGHAHSIENAKADLKLQRSNVRA-VAAGLPPT 436

Query: 879  YYCKSLYWPERGAFFILPVDSMGLGV------GSCHACGTKESE-KEKETFKVHSKTSFV 931
            Y  + +Y P +G F  L  D + LG             G    E   +  +K  ++ +  
Sbjct: 437  YVYRHVYCPRQGLFRALRRDQLRLGQWIDPQEAQQLMSGAGGGEVPPRLHYKTGAEAAAP 496

Query: 932  YGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRA--- 988
                  F    +      F +  AE    KAG   G  P+ V QL+ +  P+E +     
Sbjct: 497  LPEGRGFTLAGITYQAGEFMYVDAE----KAGGQQG-GPWAVVQLVGVEQPEEEQAPARG 551

Query: 989  -------------EVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHL-------- 1027
                          V   Q+KVRRF RP+D+  + AY +D  ++Y               
Sbjct: 552  ASGAGAAGGKGCKHVPQLQLKVRRFLRPEDLCPDLAYTADWWDLYEPAPASPSSAAATAT 611

Query: 1028 --------IFVEAIAGKCEV---RKKNDIPACNA-----PAIFQHIFFCEHLHDPSKGSL 1071
                    + V A+AGKC V       D+ A  A     P +     F         G  
Sbjct: 612  AGGMSLLQVPVSAVAGKCAVVWAGAGADLQAAVAAGPALPGVRALDTFRVVGTGLPPGQE 671

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            ++          SG   +  AS               V           LATLDIFAGCG
Sbjct: 672  EEAEWAAASASPSGHPPTTGASSAPS----------PVPGAAAGPTIRPLATLDIFAGCG 721

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
            GLSEGL QSG+SST WA+E++  A EA+  N+P + +L+ +CN +L+  M + G ++ CV
Sbjct: 722  GLSEGLHQSGVSSTLWAVEFDANAAEAYAENNPHTEVLVGDCNTLLQEAMARAGQSKYCV 781

Query: 1192 ST--SEAAELAASLDE--------------NVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                 +A E     D                    LPLPG+V+ + GGPPCQGFSG+NR 
Sbjct: 782  VARGRQAEEGTGKADPAAAASCTSAAEPSPPAAPRLPLPGEVELLVGGPPCQGFSGLNRH 841

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
              S  +     ++ ++LS+ D+++PRYF+LENV  F  +   Q
Sbjct: 842  PGSEKAVRNNSLVGSYLSYCDFYRPRYFILENVMGFTFYKPVQ 884


>gi|89055380|ref|YP_510831.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
 gi|88864929|gb|ABD55806.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
          Length = 373

 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 192/434 (44%), Gaps = 71/434 (16%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI-LRAVM 1181
             +D+F G GGLS GL+ +G +      +  + AG  F+  HP +  +      + +  +M
Sbjct: 5    AIDLFCGAGGLSAGLEMAGFTVLA-GNDLFDAAGRTFEATHPRAKFISGPIEELSVERLM 63

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
            E  G  +                          G++  + GGPPCQ +S  N  +Q    
Sbjct: 64   EVTGLRK--------------------------GELSVLVGGPPCQAYSVYN--HQRGMH 95

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              +  +   +L   D  +P + ++ENV    S   G+  R   A    +GY V   +L A
Sbjct: 96   DARASLFREYLRIVDGLRPEWIVMENVTGIYSIANGEAVRAIKAEFAALGYAVEDAVLRA 155

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R+R  ++  +        PEP H                           PF
Sbjct: 156  EDYGVPQERRR-VVFIGNRVGAPISHPEPTH---------------------GPGRANPF 193

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
                +RD IGDLP + NG +   + Y +   S +Q+++RGN   + +H +  + ++N+ R
Sbjct: 194  --TKIRDAIGDLPPLDNGENPGRVAYADARPSKYQRQMRGNAITVGNHAAPRLGKVNMDR 251

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
               IP  PG  W D+P            DL+P  +   AKR +  K  +GR+ W+G   T
Sbjct: 252  LPYIP--PGGSWRDIPH-----------DLLPEGM-KRAKRSDHTK-RYGRMTWDGLSCT 296

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             +T        G   HP+QDR ++VRE AR Q FPD ++F GS   ++ Q+GNAVPP L 
Sbjct: 297  VLTKCDI--HWGAYIHPEQDRAISVREAARLQAFPDWFEFAGSKTEQYVQVGNAVPPLLG 354

Query: 1542 FALGRKLKEAVESK 1555
             A+G  L + + ++
Sbjct: 355  KAVGDHLMQLMAAQ 368


>gi|393245687|gb|EJD53197.1| S-adenosyl-L-methionine-dependent methyltransferase [Auricularia
            delicata TFB-10046 SS5]
          Length = 829

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 213/509 (41%), Gaps = 99/509 (19%)

Query: 1099 KCIEGEDELEVEKQGG---ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPA 1155
            +C+E E++  ++K      AS++     L++F+GCGGL+  L +     T WA+E ++ A
Sbjct: 242  QCVE-EEQKRIQKWRDFVEASEDEPFRGLELFSGCGGLATALDEV-FCQTSWAVERDKSA 299

Query: 1156 GEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPG 1215
                   HP  ++   + N  LR ++ + G A       E+                   
Sbjct: 300  ALTLSKMHPNCVVHTADVNDALRTII-RTGSAAGFPDRDES------------------- 339

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
             +  + GGPPCQGFS +NR      S  +  +    LS+ D ++P YFLLENV   +S  
Sbjct: 340  -IGVLFGGPPCQGFSTLNRHRSP--SDERNLLFANMLSWVDVYRPTYFLLENVGGMLSIK 396

Query: 1276 ---------------KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASP 1320
                           +  T +L +  L  +GYQ R   L+AG +G  QSR R  I+    
Sbjct: 397  LRLELAEKDHPAVDVEFGTVKLIVRVLAALGYQARVHYLQAGMYGAPQSRHRLVIFGCRL 456

Query: 1321 HDTLPEWPEPMHVFAA-PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPA---- 1375
               LP  P   H F    +    L    Q   +     G  F+ +++ D IGDLPA    
Sbjct: 457  GTELPIAPHATHAFQGRTKATKRLPGGLQL--LLRPEPGCAFQGVSLGDAIGDLPAFDWK 514

Query: 1376 ------------------------------VGNGASKTIME-YQNDPVSWFQKRIRGNMA 1404
                                          +G+ A     E Y+   ++ FQ+R RGN  
Sbjct: 515  NPHIVIAASADDREKEAGREKYIPAFLVNPLGSAAGFAKAEDYRRHALTSFQRRCRGNRW 574

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
             +T   ++      + R   +P RPGA   D+P+              P  L   + +H 
Sbjct: 575  RVTQQQTRTFGATAVERACNVPGRPGACHLDVPE--------------PLALGKQSSQHA 620

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS 1524
                 +GRLD+    P         G  G   HP Q+R LTVRE AR QGFPD Y+F  +
Sbjct: 621  NKP--YGRLDFAVPAPVLSAQMTLSGASGQVLHPTQNRCLTVREAARIQGFPDWYEFSPT 678

Query: 1525 --IQHKHRQIGNAVPPTLAFALGRKLKEA 1551
              +   ++QIGNAVP  L  AL R ++++
Sbjct: 679  DKLPECYKQIGNAVPLPLGTALARAIQQS 707


>gi|307178879|gb|EFN67419.1| DNA (cytosine-5)-methyltransferase PliMCI [Camponotus floridanus]
          Length = 1126

 Score =  167 bits (422), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 40/172 (23%)

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLS--------------------------------TGQV 1448
            R   IP   G+DW DLP+  V+LS                                TG++
Sbjct: 884  RMSHIPTATGSDWRDLPNIAVRLSDGTFSKKLEYMHHDKRAGKSSTGALRGVCSCNTGRL 943

Query: 1449 VD--------LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQ 1500
             D        LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP Q
Sbjct: 944  CDPTDKQFNTLIPWCLPHTGNRHNHWSGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPVQ 1003

Query: 1501 DRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            +R+++VRECARSQGFPDS++F+G+I  KHRQ+GNAVPP L  A+G+++++ +
Sbjct: 1004 NRVVSVRECARSQGFPDSFRFYGTILDKHRQVGNAVPPPLGAAIGQEIRKCI 1055



 Score = 67.0 bits (162), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 114/518 (22%), Positives = 193/518 (37%), Gaps = 73/518 (14%)

Query: 488 GGFPIY-LSSIKEWMIEF--GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAI 544
           GG P   +  I EW +    G  +  I   T  A Y L +PS+ YAP+ + V +   ++ 
Sbjct: 230 GGVPTKDMGPINEWYVSGFDGGELALIGFNTAFAEYILMEPSEAYAPFMDVVKEKIYMSK 289

Query: 545 SIITML-------------KEQTRVSRLSFT----DVIKRLSEIKKDQHSYISSDPAAVE 587
            +I  L             K QT V     T    D + R ++   DQ S    D A VE
Sbjct: 290 LVIEFLLDEISPTYEDLLNKLQTVVPPKGMTKFTEDALLRHAQFICDQVSSFD-DSADVE 348

Query: 588 RYVVVHGQIVLQLFA--------------EYPDEQIKKCAFIIGLMKKMEERHHTKWLVK 633
             +++    +  L                   ++++KK A+      K+           
Sbjct: 349 DILLITTPCMRSLANLAGVTLGKKAAIRRTRREQKVKKPAWTKATTTKLVSNMFENIFTD 408

Query: 634 KKKVQKSEINLNPRASMGPVV--VSKRKVMQATTTRLINRIWGEYYSNYSPEDGKEETAC 691
           +      +I   P+     V     +      T+ + + +  G          G+ + AC
Sbjct: 409 QLAKHDDKIPTGPKRQRCGVCENCQQPDCGICTSCKDMTKFGGS---------GRSKQAC 459

Query: 692 EANEDEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRKSGL 751
                  +  Q  ++ D   EE+  S           +   +  KK I WE +     G 
Sbjct: 460 IRRRCPNMAIQEADDSDPENEEQYDSLIENQKVEEKPKKDFKELKKNIVWEEQDKIIDGQ 519

Query: 752 ALYKKAIVHG-EVVSLGSAVLVEVDELDQLPV-IYFVEYMFEATGGCKLFHGIIMQRGSH 809
             Y K+++ G E + +   VLVE      +P+ IY + +M+E   G K FH   ++RG+ 
Sbjct: 520 KTYYKSVIVGNERIQINDYVLVEPRN-PAIPLHIYKIMFMWENKSGVKQFHANWLRRGTD 578

Query: 810 TVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEE 869
           T+LG T++  E+FL++ C D+    +     V  + +P    +  ++ N D  D  +  +
Sbjct: 579 TILGETSDPIELFLSDDCDDVPFTSVSSKATVIHKKMP---DNWIELGNMDIDDEIKDTD 635

Query: 870 RKKKGLPTEYYCKSLYWPERGAF-FILPVDSMGLGVGS---CHACGTKESEKEKETFKV- 924
            K       ++ +  Y PE   F   LP         S   C AC    + ++  T KV 
Sbjct: 636 GKT------FFYQMRYTPETARFENSLPDPECPRKENSHRFCPACARLRALEQYNTPKVF 689

Query: 925 -----HSKTSFVYGTA-----EYFVHDYVYISPHHFTW 952
                 S    +YG       EY V   V++ P  F +
Sbjct: 690 ERIEEKSSKEVIYGVVRYKDEEYRVGSAVFLYPSAFKF 727



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 18/193 (9%)

Query: 109 DRPNRRLNDFILHDENGLPQPLEMLEIDD---LFISGLILPLQESSDREKEKGVRCEGFG 165
           +RP  +L  F ++D+NG     +   I+    L+ SG + P+ E  D   E GV  +  G
Sbjct: 180 ERPQNKLTYFSVYDKNGHLCAFDTGLIEKNVMLYFSGYMKPIYEE-DPSPEGGVPTKDMG 238

Query: 166 RIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEK---ARACIEVYKKL 221
            I  W +SG++ G   +I  +T  A+Y  ++P+ +Y  + ++  EK   ++  IE    L
Sbjct: 239 PINEWYVSGFDGGELALIGFNTAFAEYILMEPSEAYAPFMDVVKEKIYMSKLVIEFL--L 296

Query: 222 SKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKN 281
            + S    D  +   L  VV     +K        +D ++   +FI +Q+   D+++   
Sbjct: 297 DEISPTYED--LLNKLQTVVPPKGMTKF------TEDALLRHAQFICDQVSSFDDSADVE 348

Query: 282 DQKFAELPVLVAL 294
           D      P + +L
Sbjct: 349 DILLITTPCMRSL 361


>gi|409052037|gb|EKM61513.1| hypothetical protein PHACADRAFT_204683 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1320

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 218/490 (44%), Gaps = 72/490 (14%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
             D F G G  +  +Q++G      A+E    A    K N P++ +     N++L   ++ 
Sbjct: 820  FDPFGGVGAFALAMQEAGCLKLTHAVELSPSAALTLKRNSPDTTVYNQCANLVLEHAVKT 879

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPP--CQGFSGMNRFNQSTWS 1241
                   +       L +    + +   P PG +D I  G P   +    + + N     
Sbjct: 880  VRLPGYQLPPEYKPILKSDPTLSPLPPPPKPGDIDCIVAGFPWHVKLVMLLPKANDR--- 936

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT---------------FRLTLAS 1286
              +  +IL  LS+ D+ +P+    ENV  F+ +N                    +  + +
Sbjct: 937  --KSHLILNLLSWVDFLEPKLCFFENVCGFLQYNLNSIQASRYKLEGGIQMGGLKFLVRA 994

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-LKIMLSD 1345
            L+ MGYQV+F +L+A  +G  Q+R R F+ AA     +P +P P++ F   + L+I  S 
Sbjct: 995  LVTMGYQVKFAVLQAAHYGTPQTRVRFFLIAAQLGQPMPNFPAPLYSFTPKDALEIKFSH 1054

Query: 1346 NYQYSAVRSTANGAPFRAMTVRDTIGDL-------------------------------- 1373
                  + +    APFR +TV D IGDL                                
Sbjct: 1055 GLIARPINTENGIAPFRYVTVDDAIGDLLRWDWVNPRKGAERERRDPGTREAIRAVKVEQ 1114

Query: 1374 --PAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTD--HISKEMNELNLIRCQKIPKRP 1429
               AVG  A+ T+ +Y     + FQ++ R   + + D  HI++ +    + R   IP   
Sbjct: 1115 TKKAVGPLAAGTV-KYHGPARTRFQEKARVKQSEIKDLQHITRVLKLDTVARVTLIPLEA 1173

Query: 1430 GADWHDLPDEKVKLSTGQVVDLIPW--CLPNTA-KRHNQWKGLFGRLDWEGNFPTSITDP 1486
             AD+H L  +K         DL+ W    P +A  RH    GL+GR+D    F T++T+ 
Sbjct: 1174 KADYHALLKDK-----DIPRDLLEWHWADPKSAIARHGFRPGLYGRMDPNEWFQTTVTNV 1228

Query: 1487 QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG----SIQHKHRQIGNAVPPTLAF 1542
            +P  K     +P   R+++VRE ARSQGFPD +QF+     +++   R+IGNAVP  + +
Sbjct: 1229 EPTAKQCKVLNPFCKRVVSVRELARSQGFPDHFQFYCYDTVNVKTMQREIGNAVPWPVGY 1288

Query: 1543 ALGRKLKEAV 1552
            ALGR+L++A+
Sbjct: 1289 ALGRELRDAL 1298


>gi|328543334|ref|YP_004303443.1| DNA methylase [Polymorphum gilvum SL003B-26A1]
 gi|326415695|gb|ADZ72758.1| DNA methylase, C-5 cytosine-specific family [Polymorphum gilvum
            SL003B-26A1]
          Length = 418

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 193/428 (45%), Gaps = 64/428 (14%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAI----EYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            +D+FAG GGL+ G + +G     W I    + +  A + F+LN PE+             
Sbjct: 25   VDLFAGAGGLAVGFRSAG-----WGIVAGNDVDPDAAQTFRLNFPEASFF---------- 69

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                    E  VS   A EL A             G +D + GGPPCQ FS  N    + 
Sbjct: 70   --------EGPVSKLAADELLADCGIER-------GDLDCLVGGPPCQSFSHNNHHRSAV 114

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
              + +  +   +L+      P+  ++ENV   +S + G+     LASL E+G+    G L
Sbjct: 115  DERAR--LFEHYLTLVGALNPKTLVMENVPGILSIDGGRVVDEILASLKELGFDAVVGRL 172

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FG  Q R+R FI A+         P P H   +P L        ++   +    GA
Sbjct: 173  SAEEFGTPQLRRRVFIVASRIGAASELLPNPTHW--SPALA-------KWGGPKERPAGA 223

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQND-PVSWFQKRIRGNMAVLTDHISKEMNELN 1418
              R +TV   IGDLP + NG    I  + +  P + +Q+ +R     L +H+   +  +N
Sbjct: 224  TKRPVTVWQAIGDLPEIENGGGVQIAPWASSHPTTTYQREMRRAAPQLYNHVCHALASVN 283

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            L R   +P+  G +W ++P            DL+P  +   A+  +  K  +GRL   G 
Sbjct: 284  LDRIVHVPE--GGNWRNVPR-----------DLLPAGM-KRARLQDHTK-RYGRLSRGGF 328

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH-RQIGNAVP 1537
              T +T   P    G   HP QDR ++VRE AR QGFPDS++F G    KH  Q+GNAVP
Sbjct: 329  ASTILTKCDP--HWGAYVHPTQDRTISVREAARLQGFPDSFRFAGDNLSKHYTQVGNAVP 386

Query: 1538 PTLAFALG 1545
              +A A+G
Sbjct: 387  IQVAQAIG 394


>gi|225684039|gb|EEH22323.1| DNA methyltransferase Dim-2 [Paracoccidioides brasiliensis Pb03]
          Length = 1336

 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 190/717 (26%), Positives = 286/717 (39%), Gaps = 141/717 (19%)

Query: 876  PTEYYCKSLYWPERGAFFILPVDSMGLGVGSCHACGTKE-SEKEKETFKVHS--KTSFVY 932
            P++  C+ + +P     F+    + G GV       T E  +K   TF  H   K +  +
Sbjct: 531  PSDTVCRDMNYPHNNELFLSDHCNCGDGV-----VDTSEIVKKLNVTFFAHKAEKGADFF 585

Query: 933  GTAEYFVHDYVYIS--PHHFTWDKAEGET---FKAGRNVGLKPYVVCQLLEIIVPKEPKR 987
                YF  D  + S    HF+    +  T   F+ G  +         L E +    P +
Sbjct: 586  VRQTYFSDDETFTSLKKDHFSCQCRQPPTTPNFEIGDTI---------LFESVKESHPDQ 636

Query: 988  AEVK---------STQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCE 1038
              ++         S QVK+R   R       K+      E+ Y+  TH+I V  I  +C+
Sbjct: 637  VNLEPAEILEFGESCQVKIRLLLRRSQYVGAKSTIYRPNELVYTNRTHVIHVNQIERRCQ 696

Query: 1039 VRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKG 1098
            VR                 F+ E       GS+   PA      +  +    A    +  
Sbjct: 697  VR-----------------FYTEEQR--QNGSI---PAPYNRDGTGDAFYIIAQEAEEGS 734

Query: 1099 KCIEGEDELEVEKQGGASQE---NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPA 1155
            + +  +      KQG  S+E     L  L+IF+G G    GL++ G    +WA+E+E   
Sbjct: 735  ELVALQHPPAGFKQGFDSEEATFQKLRALNIFSGGGSFDRGLEEGGAIRNEWAVEWELAP 794

Query: 1156 GEAFKLNH--PE--SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNL 1211
               ++ N   PE   L L +  + +LRA   K                  S D N++  L
Sbjct: 795  MLTYRANQHDPERVKLFLGSVNDFLLRAFQGK------------------SEDNNLVAKL 836

Query: 1212 PLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
               G V+FI+ G PCQG+S +N   ++  S     MI +  S+ D+F+P+Y +LENV   
Sbjct: 837  ---GDVEFISAGSPCQGYSSVNSCKENEVSMRNSSMIASVASYVDFFRPKYAILENVIMM 893

Query: 1272 VS-FNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
             +  NK       L + + MGYQ+R   L+A +FG  QSR R FI+ A P   LP  P  
Sbjct: 894  SNRSNKKNPLCQLLCAFVGMGYQLRILNLDAWSFGAPQSRSRLFIFIAVPGLQLPAHPPL 953

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA----------MTVRDTIGDLPAVGNGA 1380
             H   +   +  L D           NG PF            ++V  ++ DLP +G G 
Sbjct: 954  THSHLSKTTQKSLGD---------APNGLPFGKRRWDIPVFDFLSVSKSLMDLPRIGRG- 1003

Query: 1381 SKTIMEYQNDPVSWFQKR-IRGNMAV---LTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436
                   +  PV++   R IR   A    L   + K        RCQ + +     + DL
Sbjct: 1004 -------KITPVAYPDHRTIRTESAANQRLLSSVPKTP------RCQGLFEAVARGYIDL 1050

Query: 1437 -PDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK-VGM 1494
               +K KL  GQ                  W  +   L      PT  T P P  K  G 
Sbjct: 1051 EKTQKRKLRKGQ----------------RAWSRIHPHL----LMPTVTTFPSPFCKFTGR 1090

Query: 1495 CFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
              H ++DR++TV E  R+QGFPD     GS   + + +GN+V   +A ALG  ++EA
Sbjct: 1091 WLHWEEDRVMTVMEVRRAQGFPDDEVLIGSPAQQWKIVGNSVARQVALALGLVMREA 1147


>gi|20278869|dbj|BAB91073.1| chloroplast-resident DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1344

 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 159/329 (48%), Gaps = 62/329 (18%)

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA--- 1336
            F+L L +LL+MGYQVRFG L AG +GV QSRKR FI AA P + LP WP PMH F     
Sbjct: 987  FKLALRTLLDMGYQVRFGALNAGNYGVPQSRKRVFIIAALPEEVLPNWPRPMHSFRVAAE 1046

Query: 1337 -----------PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM 1385
                       P +++     Y   A    A G P RA+TVRD IG+LP +  G      
Sbjct: 1047 AGSNREGQQDQPFIEVPGGKYYANGAGMRLA-GTPLRAVTVRDAIGNLPPITPGTKDDPA 1105

Query: 1386 EYQNDPVSWFQKRI------------------------RGNMAVLTDHIS-KEMNELNLI 1420
                 P+S FQ R+                             VL DH++ + ++E +  
Sbjct: 1106 VPLPRPMSAFQWRLAEAATAGRQRSADGSEHADGGVGGGAPPPVLADHVTPRVLSEFHAK 1165

Query: 1421 RCQKIPKRPGADWHDLPDE-------------KVKLSTGQVVD--LIPWCLPNTAKRHNQ 1465
                +P  PG D   + D+             ++  +TGQ  +  L  W +       N+
Sbjct: 1166 AASLVP--PGMDIFLVADKLKGPGDMTAAAAQQLSAATGQTPEQYLERWQVVEPNLPENR 1223

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP--DQDRILTVRECARSQGFPDSYQFHG 1523
              G++GRL     F T+ T    +G  G   HP  DQ R ++VRE ARSQGFPD ++F G
Sbjct: 1224 RSGMYGRLCHTSYFRTATTK---VGVDGWSLHPDLDQQRTVSVREVARSQGFPDQHRFKG 1280

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            S+   ++Q+GNAVPP LA ALG +L +A+
Sbjct: 1281 SVADCYKQVGNAVPPPLALALGLQLSQAL 1309



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 16/174 (9%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            LATLDIFAGCGGLSEGL QSG+SST WA+E++  A +A+  N+P + +L+ +CN +L+  
Sbjct: 729  LATLDIFAGCGGLSEGLHQSGVSSTLWAVEFDANAAKAYTENNPHTEVLVGDCNTLLQEA 788

Query: 1181 MEKCGDAEDCVST--SEAAELAASLD--------------ENVINNLPLPGQVDFINGGP 1224
            M + G ++ CV     EA E     D                    LPLPG+V+ + GGP
Sbjct: 789  MARAGQSKYCVVVRGREAEEGTGKADPAAAASCTSAAEPSPPAAPRLPLPGEVELLVGGP 848

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
            PCQGFSG+NR   S  +     ++ ++LS+ D+++PRYF+LENV  F  +   Q
Sbjct: 849  PCQGFSGLNRHAGSEKAVRNNSLVGSYLSYCDFYRPRYFILENVMGFTFYKPVQ 902


>gi|37693466|dbj|BAC99051.1| chloroplast-resident DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1344

 Score =  164 bits (414), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 159/329 (48%), Gaps = 62/329 (18%)

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA--- 1336
            F+L L +LL+MGYQVRFG L AG +GV QSRKR FI AA P + LP WP PMH F     
Sbjct: 987  FKLALRTLLDMGYQVRFGALNAGNYGVPQSRKRVFIIAALPEEVLPNWPRPMHSFRVAAE 1046

Query: 1337 -----------PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM 1385
                       P +++     Y   A    A G P RA+TVRD IG+LP +  G      
Sbjct: 1047 AGSNREGQQDQPFIEVPGGKYYANGAGMRLA-GTPLRAVTVRDAIGNLPPITPGTKDDPA 1105

Query: 1386 EYQNDPVSWFQKRI------------------------RGNMAVLTDHIS-KEMNELNLI 1420
                 P+S FQ R+                             VL DH++ + ++E +  
Sbjct: 1106 VPLPRPMSAFQWRLAEAATAGRQRSADGSEHADGGVGGGAPPPVLADHVTPRVLSEFHAK 1165

Query: 1421 RCQKIPKRPGADWHDLPDE-------------KVKLSTGQVVD--LIPWCLPNTAKRHNQ 1465
                +P  PG D   + D+             ++  +TGQ  +  L  W +       N+
Sbjct: 1166 AASLVP--PGMDIFLVADKLKGPGDMTAAAAQQLSAATGQTPEQYLERWQVVEPNLPENR 1223

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP--DQDRILTVRECARSQGFPDSYQFHG 1523
              G++GRL     F T+ T    +G  G   HP  DQ R ++VRE ARSQGFPD ++F G
Sbjct: 1224 RSGMYGRLCHTSYFRTATTK---VGVDGWSLHPDLDQQRTVSVREVARSQGFPDQHRFKG 1280

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            S+   ++Q+GNAVPP LA ALG +L +A+
Sbjct: 1281 SVADCYKQVGNAVPPPLALALGLQLSQAL 1309



 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 17/172 (9%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            LATLDIFAGCGGLSEGL QSG+SST WA+E++  A +A+  N+P + +L+ +CN +L+  
Sbjct: 729  LATLDIFAGCGGLSEGLHQSGVSSTLWAVEFDANAAKAYTENNPHTEVLVGDCNTLLQEA 788

Query: 1181 MEKCGDAEDCVST--SEAAELAASLD--------------ENVINNLPLPGQVDFINGGP 1224
            M + G ++ CV     EA E     D                    LPLPG+V+ + GGP
Sbjct: 789  MARAGQSKYCVVARGREAEEGTGKADPAAAASCTSAAEPSPPAAPRLPLPGEVELLVGGP 848

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276
            PCQGFSG+NR   S  +     ++ ++LS+ D+++PRYF+LENV  F +F+K
Sbjct: 849  PCQGFSGLNRHPGSEKAVRNNSLVGSYLSYCDFYRPRYFILENVMGF-TFHK 899


>gi|322792109|gb|EFZ16181.1| hypothetical protein SINV_14765 [Solenopsis invicta]
          Length = 298

 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 94/124 (75%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRN 1270
            LP  G+V+ I GGPPCQGFSGMNRFN   +S  +  ++++FLS+ DY++P++F++ENVRN
Sbjct: 138  LPQKGEVELICGGPPCQGFSGMNRFNSRQYSLFKNSLVVSFLSYCDYYKPKFFIMENVRN 197

Query: 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
            F S  KG   +LTL  L+ MGYQ  FGIL+AG++GV Q+RKR  + AA+P + LP +PEP
Sbjct: 198  FTSCKKGMVLKLTLRCLVRMGYQCTFGILQAGSYGVPQTRKRMILIAAAPGEILPNYPEP 257

Query: 1331 MHVF 1334
            MHVF
Sbjct: 258  MHVF 261



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 32/46 (69%)

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            + Q+G++ + WAIE EE A  A++LN+ ++ +   +CN++L+ VM 
Sbjct: 1    MHQAGVAESLWAIEKEEAAANAYRLNNSKATVFTEDCNILLQKVMN 46


>gi|34784446|gb|AAH57461.1| Dnmt1 protein [Danio rerio]
          Length = 200

 Score =  163 bits (413), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 107/182 (58%), Gaps = 40/182 (21%)

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG--------------------------- 1446
            M+ L   R + IP  PG+DW DLP+ +V+L  G                           
Sbjct: 1    MSALVAARIRNIPLAPGSDWRDLPNFEVRLRDGTTTKKLRYTHSDKKNGRSGTGALRGVC 60

Query: 1447 -------------QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG 1493
                         Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G
Sbjct: 61   SCSEGKPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQG 120

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
               HP+Q R+++V+ECARSQGFPD+Y+F G++  KHRQ+GNAVPP L+ A+G ++K+ V 
Sbjct: 121  RVLHPEQHRVVSVKECARSQGFPDTYRFFGNVLDKHRQVGNAVPPPLSKAIGLEVKKCVL 180

Query: 1554 SK 1555
             K
Sbjct: 181  EK 182


>gi|295664785|ref|XP_002792944.1| DNA methyltransferase Dim-2 [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226278465|gb|EEH34031.1| DNA methyltransferase Dim-2 [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1371

 Score =  163 bits (412), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 158/581 (27%), Positives = 239/581 (41%), Gaps = 102/581 (17%)

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            +S QVK+R   R       K+      E+ Y+  TH+I V  I  +C+VR          
Sbjct: 684  ESCQVKIRLLLRRSQYFGAKSTICRPNELVYTNRTHVIHVNQIERRCQVR---------- 733

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
                   F+ E       GS+   PA      +  +    A    +    +  +      
Sbjct: 734  -------FYTEEQR--QNGSI---PAPYNRDGTGDAFYIIAQEAEEGSDLVALQHPPAGF 781

Query: 1111 KQGGASQE---NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PE 1165
            KQG  S++     L  L+IF+G G    GL++ G    +WA+E+E      ++ N   PE
Sbjct: 782  KQGFDSEDVTFPKLRALNIFSGGGSFDRGLEEGGAIRNEWAVEWELAPMLTYRANQHDPE 841

Query: 1166 --SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
               L L +  + +LRA              +EA +L A L           G V+FI+ G
Sbjct: 842  RVKLFLGSVNDFLLRAFQ----------GNTEANDLVAKL-----------GDVEFISAG 880

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRL 1282
             PCQG+S +N   ++  S     MI +  S+ D+F+P+Y +LENV    +  NK      
Sbjct: 881  SPCQGYSSVNSCKENEVSMRNSSMIASVASYVDFFRPKYAILENVIMMSNRSNKKNPLCQ 940

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             L + + MGYQ+R   L+A +FG  QSR R FI+ A+P   LP  P   H   +   +  
Sbjct: 941  LLCAFVGMGYQLRILNLDAWSFGAPQSRSRLFIFIAAPGLQLPAHPPLTHSHLSKTTQKS 1000

Query: 1343 LSDNYQYSAVRSTANGAPFRA----------MTVRDTIGDLPAVGNGASKTIMEYQNDPV 1392
            L D           NG PF            + V  ++ DLP +G G        +  PV
Sbjct: 1001 LGD---------APNGLPFGKRRWDIPVFDFLCVSKSLMDLPRIGRG--------KITPV 1043

Query: 1393 SWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDL-PDEKVKLSTGQVVDL 1451
            ++   R     +     +   + +    RCQ + +     + DL   +K KL  GQ    
Sbjct: 1044 AYPDHRTMRTESAANQRLLSSVPKTP--RCQGLFEAVARGYIDLEKTQKRKLRKGQ---- 1097

Query: 1452 IPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECA 1510
                          W  +   L      PT  T P P  K  G   H ++DR++TV E  
Sbjct: 1098 ------------RAWSRIHPHL----LMPTVTTFPSPFCKFTGRWLHWEEDRVMTVMEVR 1141

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            R+QGFPD     GS   + + +GN+V   +A ALG  ++EA
Sbjct: 1142 RAQGFPDDEVLIGSPAQQWKVVGNSVARQVALALGLVMREA 1182


>gi|147853570|emb|CAN82352.1| hypothetical protein VITISV_019438 [Vitis vinifera]
          Length = 279

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 102/151 (67%), Gaps = 18/151 (11%)

Query: 1318 ASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVG 1377
            ASP +TL EW    HVFA  ELK+       Y+AVRSTA G PFRA+TVRD IGDLP +G
Sbjct: 40   ASPDETLLEW----HVFAGLELKV-----NNYAAVRSTATGGPFRAITVRDAIGDLPNIG 90

Query: 1378 NGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            NGA +T ME+  +  SW+Q++ RG+M++LTDHISK+MNELNLIRC+KIPK  G       
Sbjct: 91   NGACETTMEFLREASSWYQRKFRGDMSILTDHISKKMNELNLIRCKKIPKFRG------- 143

Query: 1438 DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
               V L  GQ+  L P  L N AKR NQWKG
Sbjct: 144  --DVFLFIGQIAKLTPPWLLNLAKRXNQWKG 172


>gi|427387312|ref|ZP_18883368.1| DNA (cytosine-5-)-methyltransferase [Bacteroides oleiciplenus YIT
            12058]
 gi|425725473|gb|EKU88344.1| DNA (cytosine-5-)-methyltransferase [Bacteroides oleiciplenus YIT
            12058]
          Length = 356

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 196/429 (45%), Gaps = 92/429 (21%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +DIF+G GGLS G + +GI+  ++AIE +E + + +  NHP + ++              
Sbjct: 11   IDIFSGAGGLSLGAEWAGIT-VRYAIEIDENSAKTYSKNHPNTQII-------------- 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                   +S  E +  +    EN+            + GGPPCQGFS  NR    T    
Sbjct: 56   ----RQDISNVETSTFS---HENIF----------ILFGGPPCQGFSVSNR-KTRTVENE 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
               +   FL F D   P +FL ENV   V+F+KG+T R  L    ++GY+    IL A  
Sbjct: 98   NNGLFKEFLRFVDDLNPEWFLFENVEGLVNFDKGKTLRYILNQFKKIGYKTSEAILYASD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R R FI   + +D   ++P P                               + 
Sbjct: 158  YGVPQHRNRFFI-VGNRNDIDFDFPPPND-----------------------------KI 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQND----PVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            +TV + I DLP + NGA    + Y+ND      S   +R + N +   +++S+  + + +
Sbjct: 188  ITVGEAINDLPIIENGAHCDALPYRNDIELSDYSLLMRR-KSNKST-QNYVSRNADYI-I 244

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             R + I  + G +W  +P+               + + N   ++N   G++ RL  E + 
Sbjct: 245  ERYKYI--KQGQNWRSIPE---------------FLMTNYKNKNNCHSGIYKRL--EEDK 285

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            P+ +       +  M  HP QDR L+VRE AR Q FPD + F G+I +  +QIGNAVPP 
Sbjct: 286  PSVVISNY---RKNMLIHPWQDRGLSVREAARLQSFPDDFVFEGTIHYIQQQIGNAVPPL 342

Query: 1540 LAFALGRKL 1548
            LA A+ +K+
Sbjct: 343  LAEAIFKKI 351


>gi|226293429|gb|EEH48849.1| DNA methyltransferase Dim-2 [Paracoccidioides brasiliensis Pb18]
          Length = 1311

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 163/585 (27%), Positives = 242/585 (41%), Gaps = 110/585 (18%)

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNA 1050
            +S QVK+R   R       K+      E+ Y+  TH+I V  I  +C+VR          
Sbjct: 624  ESCQVKIRLLLRRSQYVGAKSTIYRPNELVYTNRTHVIHVNQIERRCQVR---------- 673

Query: 1051 PAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVE 1110
                   F+ E       GS+   PA      +  +    A    +  + +  +      
Sbjct: 674  -------FYTEEQR--QNGSI---PAPYNRDGTGDAFYIIAQEAEEGSELVALQHPPAGF 721

Query: 1111 KQGGASQE---NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PE 1165
            KQG  S+E     L  L++F+G G    GL++ G    +WA+E+E      ++ N   PE
Sbjct: 722  KQGFDSEEATFQKLRALNLFSGGGSFDRGLEEGGAIRNEWAVEWELAPMLTYRANQHDPE 781

Query: 1166 --SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGG 1223
               L L +  + +LRA   K                  S D N++  L   G V+FI+ G
Sbjct: 782  RVKLFLGSVNDFLLRAFQGK------------------SEDNNLVAKL---GDVEFISAG 820

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRL 1282
             PCQG+S +N   ++  S     MI +  S+ D+F+P+Y +LENV    +  NK      
Sbjct: 821  SPCQGYSSVNSCKENEVSMRNSSMIASVASYVDFFRPKYAILENVIMMSNRSNKKNPLCQ 880

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             L + + MGYQ+R   L+A +FG  QSR R FI+ A P   LP  P   H   +   +  
Sbjct: 881  LLCAFVGMGYQLRILNLDAWSFGAPQSRSRLFIFIAVPGLQLPAHPPLTHSHLSKTTQKS 940

Query: 1343 LSDNYQYSAVRSTANGAPFRA----------MTVRDTIGDLPAVGNGASKTIMEYQNDPV 1392
            L D           NG PF            ++V  ++ DLP +G G        +  PV
Sbjct: 941  LGD---------APNGLPFGKRRWDIPVFDFLSVSKSLMDLPRIGRG--------KITPV 983

Query: 1393 SWFQKR-IRGNMAV---LTDHISKEMNELNLIRCQKIPKRPGADWHDL-PDEKVKLSTGQ 1447
            ++   R IR   A    L   + K        RCQ + +     + DL   +K KL  GQ
Sbjct: 984  AYPDHRTIRTESAANQRLLSSVPKTP------RCQGLFEAVARGYIDLEKTQKRKLRKGQ 1037

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTV 1506
                              W  +   L      PT  T P P  K  G   H ++DR++TV
Sbjct: 1038 ----------------RAWSRIHPHL----LMPTVTTFPSPFCKFTGRWLHWEEDRVMTV 1077

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             E  R+QGFPD     GS   + + +GN+V   +A ALG  ++EA
Sbjct: 1078 MEVRRAQGFPDDEVLIGSPAQQWKIVGNSVARQVALALGLVMREA 1122


>gi|310657622|ref|YP_003935343.1| Cytosine-specific methyltransferase [[Clostridium] sticklandii]
 gi|308824400|emb|CBH20438.1| Cytosine-specific methyltransferase [[Clostridium] sticklandii]
          Length = 344

 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 193/436 (44%), Gaps = 94/436 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F GCGGLS G +Q+G +     I+ ++ A E FKLNH  S  +           
Sbjct: 1    MNLIDLFCGCGGLSYGFEQAGFNVL-LGIDNDKAALETFKLNHKNSKTI----------- 48

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG--FSGMNRFNQS 1238
               CGD  +            + DE  INN+    ++D I GGPPCQG   SG  +F   
Sbjct: 49   ---CGDIREI-----------TFDE--INNVIGNKKIDLIVGGPPCQGMSLSGPRKFEDP 92

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 + E+ L+F+      QP+ F++ENV   VS  KG+     +    EMGY+VRF I
Sbjct: 93   -----RNELYLSFIRLVKEIQPKAFVIENVPGLVSLFKGKIKDSIIEKFSEMGYKVRFEI 147

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            + A  +GV QSRKR         D   E+PE M+ +   E+                   
Sbjct: 148  MCASDYGVPQSRKRVIFVGH--QDKEFEFPEKMNTYVTCEM------------------- 186

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                       + DLP + +        Y  DP + +Q+ +R + ++L +HI+ + +E  
Sbjct: 187  ----------ALSDLPPLEDCLGNEESPYYKDPQNDYQQIMRQHSSILRNHIAAKHSEQV 236

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                  +P   G ++ DLP E                  NT K +  W     R + +  
Sbjct: 237  KHIISLVPD--GGNYKDLPIE----------------YKNTRKFNVAWT----RFNSKKP 274

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             PT  T  +        FH   +R+ TVRE AR Q FPD + F G+   + RQ+GNAVPP
Sbjct: 275  APTIDTGHR------HHFHYKYNRVPTVRESARLQSFPDDFVFLGNKTQQFRQVGNAVPP 328

Query: 1539 TLAFALGRKLKEAVES 1554
             +A  LG K+K  +++
Sbjct: 329  IMAQILGEKIKNLLKN 344


>gi|448429916|ref|ZP_21584687.1| DNA-cytosine methyltransferase [Halorubrum tebenquichense DSM 14210]
 gi|445689621|gb|ELZ41849.1| DNA-cytosine methyltransferase [Halorubrum tebenquichense DSM 14210]
          Length = 403

 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 188/435 (43%), Gaps = 80/435 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+FAG GGLS GL+++G      A+E ++ A  +F  N                  
Sbjct: 6    LTYVDLFAGAGGLSVGLERAGFELVH-AVEVDDDARTSFANNR----------------- 47

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                    + +   E  +    +D   I  +     VD + GGPPCQGFS          
Sbjct: 48   --------EGLEPEEMTQDIREVDNQDITEVVGRDTVDLVAGGPPCQGFS---EVVSPDG 96

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S  +  + + F+S+ +   P+  L ENVR   +   G+ F     S  +MGY V   ++E
Sbjct: 97   SDDRNHLFVNFISWVNELDPKAALFENVRGMTNTADGKFFDAVEESFDQMGYDVTHRVVE 156

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  FGV Q R R  + A    +T  E P     F   EL                    P
Sbjct: 157  ASDFGVPQHRHRLLVLATKKSET--ELP-----FDGFELD-------------------P 190

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                 V D IGDLP VG G +KT  EY  +P +  Q+ +RG++  LT H +   ++  + 
Sbjct: 191  VDIPGVIDGIGDLPEVGPGETKT--EYDAEPETVIQRDLRGDVDDLTHHQAANHSDDMVE 248

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                I    G +  ++PDE                L  ++  HN +     RLD E    
Sbjct: 249  MLSHISD--GGNRTEIPDE----------------LQPSSGYHNSYS----RLDSE-EPA 285

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
             +IT          C HP QDR LT RE AR Q FPDSY+F G +    +QIGNAVPP L
Sbjct: 286  VAITSNMSKPSSARCVHPFQDRGLTPREGARLQTFPDSYRFEGRLGAVRKQIGNAVPPYL 345

Query: 1541 AFALGRKLKEAVESK 1555
            A A+G  LK++V S+
Sbjct: 346  AEAVGYYLKQSVYSQ 360


>gi|328857943|gb|EGG07057.1| hypothetical protein MELLADRAFT_85954 [Melampsora larici-populina
            98AG31]
          Length = 883

 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 212/509 (41%), Gaps = 89/509 (17%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWA--IEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            L+ L++F G G  S G  + G++  K    I++  PA E   +N P+S +   + N IL 
Sbjct: 359  LSHLELFGGIGSFSLGFSEHGLTDQKRTVFIDWSVPACETASINFPKSTIFCADVNEILC 418

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
             ++      +     S   +L   L +   + LP PG  D I  G PC   S +N   + 
Sbjct: 419  LMIT----GKTRQGKSSVRDLRTGL-QIFPDQLPKPGDFDIITAGFPCGSHSTLNVLRKG 473

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN----------KGQTFRLTLASLL 1288
              SK    +    LSF ++ +P Y   ENVR  +                  RL   +++
Sbjct: 474  EDSK--NALCGTALSFIEFLKPTYVYFENVRGLLKTQLVDRETQEILTHAFLRLMCGTMI 531

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD-NY 1347
             + YQ+RFG+L+A  +G  Q R+R  + A     TLP  P+P H +    L+I L D N 
Sbjct: 532  TLDYQLRFGVLQAAQYGTPQERRRFILTAVKRGYTLPNLPDPTHFYPDGNLQIKLPDQNK 591

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIM---------------------- 1385
             +   R+  +      +T+ DTI DLP         IM                      
Sbjct: 592  IFMDFRTRYSRGTLDPITIGDTISDLPCFEYRNPMKIMGDFNKPTRKKFKKRSKECVLVN 651

Query: 1386 -------------------EYQNDPVSWFQKRIR------GNMAVLTD----------HI 1410
                               +Y+ +P + FQ  +R       ++ +  D          H+
Sbjct: 652  GDHRFGRLEKTDWVGFQKFKYRINPQNNFQIYLRTQRKEDDDLVLQNDGDEEEEPINWHV 711

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
            +   +E  + +   IP R GAD+ DLP+E +K    +           T      ++G F
Sbjct: 712  TGRFSEKTVEQIWHIPIREGADYKDLPEE-LKYKEAEPKK------SQTKDYSRDYEGNF 764

Query: 1471 GRLDWEGNFPTSIT--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG---SI 1525
            GRL     F T IT  DP+  G+ G   HP Q R+LTV E  R+QGFPD +        +
Sbjct: 765  GRLSPHLLFRTVITTMDPRNQGRTGQVLHPSQHRVLTVLEAQRAQGFPDWFVLSNKSEGV 824

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
            +  ++QIGN++P  +  +L   L E+ E+
Sbjct: 825  KGLYKQIGNSIPLPITRSLAFCLCESREA 853


>gi|393245839|gb|EJD53349.1| S-adenosyl-L-methionine-dependent methyltransferase [Auricularia
            delicata TFB-10046 SS5]
          Length = 787

 Score =  160 bits (405), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 142/507 (28%), Positives = 225/507 (44%), Gaps = 85/507 (16%)

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLN 1162
            EDE + E    A     L   D ++G GGLS G+++ S    + +A++ +E   + F  N
Sbjct: 288  EDEFDEEHDSHA-----LRMFDPYSGPGGLSLGIERGSRCIRSSYAVDIDESTVKTFCAN 342

Query: 1163 HPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
              E++   ++ N  L +++ +          + + +  A+ +            VD I  
Sbjct: 343  S-EAVCFHDDANHFLESILVRGSRITSIDGRTHSLQAGANFN------------VDVICA 389

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF----------- 1271
            G PCQG S +N    S   +   + +L  LS  +  +PRY  +ENV              
Sbjct: 390  GVPCQGHSRLNIHRGSKEGEHNNQQMLTALSLVEVLRPRYVCIENVPAIDKWALKMRRET 449

Query: 1272 -----VSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE 1326
                 ++ +     RLT+  LL +GYQVR GIL+AG +G  QSR+R  + AA    TLP+
Sbjct: 450  DDGIPIAADPHGGLRLTITILLALGYQVRVGILQAGNYGTPQSRRRFILLAAEFGSTLPD 509

Query: 1327 WPEPMHVFAA---------PELKI---MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDL- 1373
             P P+  F +         P++K+   +  D         +    P  ++TV D IGDL 
Sbjct: 510  LPRPITAFDSHHGLTLKSFPKVKVPWPVWDDEDTEGDTFQSPLYVPHCSVTVGDAIGDLQ 569

Query: 1374 -----PAV-GNGASKTIMEYQNDPVSW----------------FQKRIRGNMAVLTD--- 1408
                 P +   GAS  I  +  DP +                 +Q R R N   +TD   
Sbjct: 570  PFDWSPGIRAAGASSKIDSFPCDPKTGCEPDFATPYAFEPQNEYQLRAR-NSGDVTDVPQ 628

Query: 1409 --HISKEM-NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
              HI+    +E+    C   P    AD+  +   +   S   + D +     +T ++   
Sbjct: 629  LQHITAGYPSEVVRKICSMSPT--DADYRGMGSHRK--SDYMISDPV----SSTGRKGFA 680

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
                + RL+ +  F T +T   P GK     HP Q+R+++VRE AR QGFPDS++F GSI
Sbjct: 681  PGVYYRRLNNDDAFSTLVTKVHPTGKQSQVIHPSQNRLISVREMARGQGFPDSFRFEGSI 740

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAV 1552
                 Q+GNAVP  L  A+GR+++ A+
Sbjct: 741  TEMQHQLGNAVPVPLGEAIGRQIRVAM 767


>gi|402080297|gb|EJT75442.1| modification methylase DdeI [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1216

 Score =  159 bits (403), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 163/642 (25%), Positives = 267/642 (41%), Gaps = 106/642 (16%)

Query: 935  AEYFVHD--------YVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPK 986
            AE+F+          +V +    FT  +  G  ++ G  V  + +   + LE   P E  
Sbjct: 526  AEFFIRQMYLTDERRWVVLRESDFTCSQDRGRRYEVGDTVLARTFPNGKTLE---PYE-- 580

Query: 987  RAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIP 1046
              ++       R+  R D I       +   E+ Y+++T  + +  I G C VR    IP
Sbjct: 581  IVDLSGGNANFRKLERRDRIDGSDTAPN---ELIYTDDTISMPISWIQGPCTVRI---IP 634

Query: 1047 ACNAPAI------FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKC 1100
            +  AP+         +IF+  H         ++        +   S+ S           
Sbjct: 635  SDAAPSTPYDRRGTGNIFYITH---------RRQDDSTLTPFDDASIPSTFR-------- 677

Query: 1101 IEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160
             +G + LE+ K         L  LD+FAGCG L  G+++ G    KW  +    A   + 
Sbjct: 678  -QGFNPLEMGKSF-----TPLRGLDLFAGCGNLGRGIEEGGAVRVKWVNDIWNVAIHTYM 731

Query: 1161 LN-HPESLMLINNCNVIL-RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVD 1218
             N  P+++  + + + +L +A+  +CG +                       +P  G+V+
Sbjct: 732  ANADPDAVPFLGSVDTMLEKALKGECGPS-----------------------VPAKGEVE 768

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV--SFNK 1276
            FI+GG PCQGFS +     S   K    ++ +F SF D+++P+Y +LENV + V  S N 
Sbjct: 769  FISGGSPCQGFSLLTANKSSEAQKKNRSLVASFASFVDFYRPKYGILENVSSMVGKSDNP 828

Query: 1277 GQT-FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            G   F   L +++ MGYQ++  + +A  +G  QSR R F+  A P  TLPE P   H   
Sbjct: 829  GSDYFSQLLCAIVGMGYQIQIILGDAWTYGAPQSRSRVFLIFALPGCTLPERPMMSHSHP 888

Query: 1336 APELKIM---LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPV 1392
                +     LS+N Q+S  +       F  ++  + +  LP + +G             
Sbjct: 889  GGTKRFSLGKLSNNEQFS--QREFEPTAFSYVSSGEAMKGLPNIQDG------------- 933

Query: 1393 SWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLI 1452
                 R+R      +DH S   + +  +R   IP  P    + +   K    TGQ+ +  
Sbjct: 934  -----RVR-ICPGFSDHNSSATSPIEQLRTSLIPTAP----YGMGFAKAYYKTGQITEAE 983

Query: 1453 PWCLPNTAKRHNQWKGL-FGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECA 1510
              C P       Q K   + R D    F T  T PQP   +     HP + R L++ E  
Sbjct: 984  RLCFPENPSHRVQPKSRGWTRQDPTKLFATVTTTPQPTDARTAHITHPFEHRTLSILEIR 1043

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            R+QG PD     GS  ++ + IGN+V    + ALG +L+ A+
Sbjct: 1044 RAQGVPDDEVLVGSFANRWKLIGNSVARQASLALGLELRRAM 1085


>gi|283783021|ref|YP_003373775.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|283441534|gb|ADB14000.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
          Length = 357

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 188/431 (43%), Gaps = 84/431 (19%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              +D+F+G GGLS G ++ G S    A EY+E    A+  NH  + M++ +   +     
Sbjct: 4    TVIDLFSGVGGLSLGFEEEGFS-VLLANEYDESIANAYMKNHKTTKMVVGDITSL----- 57

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                D +    T +                    ++D I GGPPCQGFS   +  + T  
Sbjct: 58   ----DLDAVFGTYK-------------------NKIDVIIGGPPCQGFS--QKGQRKTIY 92

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              +  +   ++   +  +P+YF++ENV N ++  KG  F         MGY ++ G+L A
Sbjct: 93   DKRNFLFEYYVKVVELVKPKYFVMENVPNLLTAEKGYFFNEIETLFNAMGYFLQHGVLNA 152

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              FGV Q+RKRA I     +   P  P  ++                             
Sbjct: 153  ADFGVPQNRKRAVIIGKM-NGVAPSLPSSLN----------------------------- 182

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
              +T+ D I DL  + +G    + EY+  P S ++K++RG+  +L +H + + + L+L R
Sbjct: 183  EKVTIWDAISDLAFLESGEGDEVQEYRYAPQSEYEKKLRGHANLLYNHKATKHSPLSLKR 242

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
             + IP  P A    LP E +  S                     + G + R+  + +   
Sbjct: 243  LRMIP--PNAGKEVLPKEHLTKSI--------------------YSGTWTRMKKD-DISV 279

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            +IT        G   HP  +R +TVRE AR Q FPD + F GS   + RQ+GNAVPP LA
Sbjct: 280  TITTRFDTPSSGKFTHPFLNRAITVREAARIQSFPDEFIFIGSKSSQMRQVGNAVPPLLA 339

Query: 1542 FALGRKLKEAV 1552
             A+ R +K  +
Sbjct: 340  SAIARVIKNDI 350


>gi|347533667|ref|YP_004842380.1| DNA methylase C-5 cytosine-specific family protein [Sphingobium
            chungbukense]
 gi|345452348|gb|AEN94388.1| DNA methylase C-5 cytosine-specific family protein [Sphingobium
            chungbukense]
          Length = 389

 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 189/423 (44%), Gaps = 70/423 (16%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            +++  +D+F G GGLSEG +Q+G        +Y++ AGE F   HPE+  +         
Sbjct: 5    HNMTVIDLFCGAGGLSEGFRQAGFHVLA-GQDYDDRAGETFSATHPEAKFI--------- 54

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                  G  +D   T++    AA + +         G++D I GGPPCQG+S  N  +Q 
Sbjct: 55   -----GGPIQDV--TAQQLLKAAGVKK---------GEIDVIVGGPPCQGYSVYN--HQR 96

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
              +  +  +   +L      QPR+ ++ENV    S   G         +  +GY+V   +
Sbjct: 97   GVNDPRAGLFREYLRIVKGIQPRWIVMENVTGITSIGGGGIVHEIFEGMKSLGYRVDMKV 156

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +GV Q R+R F + A+  D    +PE  H    P L                   
Sbjct: 157  LRAEEYGVPQERRRVF-FIATRTDAPILFPEQTH---GPGL------------------- 193

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             PF  +TV D I DLP + NG       Y   P + +Q  +RG+  ++ +H +  ++ +N
Sbjct: 194  LPF--VTVWDAISDLPKLENGDRAGPRPYGKRPQNSYQALLRGDCTIVQNHSASRLSRIN 251

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
              R + IP   G  W D+P           +DL+P  +   AKR +  K  +GR      
Sbjct: 252  QERMRHIPA--GGSWRDIP-----------IDLLPAGM-KLAKRSDHTK-RYGRPKKTDL 296

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
              T +T        G   HP QDR  TVRE AR Q FPD + F G+   ++ Q+GNAVPP
Sbjct: 297  SCTVLTKCDV--HWGAYIHPVQDRSFTVREAARLQSFPDFFTFKGNSTEQYVQVGNAVPP 354

Query: 1539 TLA 1541
             L 
Sbjct: 355  LLG 357


>gi|348509437|ref|XP_003442255.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Oreochromis
            niloticus]
          Length = 234

 Score =  157 bits (398), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 100/170 (58%), Gaps = 40/170 (23%)

Query: 1426 PKRPGADWHDLPDEKVKLSTG--------------------------------------- 1446
            PK+  +DW DLP+ +V+L  G                                       
Sbjct: 46   PKKXXSDWRDLPNIEVRLKDGTLTKKLRYTHHDKKNGRSGTGALRGVCTCAGGKPCDPSD 105

Query: 1447 -QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILT 1505
             Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++
Sbjct: 106  RQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVS 165

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            VRECARSQGFPD+Y+F G+I  KHRQ+GNAVPP L+ A+G ++K  +  K
Sbjct: 166  VRECARSQGFPDTYRFFGNILDKHRQVGNAVPPPLSRAIGLEIKRCITEK 215


>gi|410643136|ref|ZP_11353638.1| DNA (cytosine-5-)-methyltransferase [Glaciecola chathamensis S18K6]
 gi|410137314|dbj|GAC11825.1| DNA (cytosine-5-)-methyltransferase [Glaciecola chathamensis S18K6]
          Length = 356

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 190/433 (43%), Gaps = 89/433 (20%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML---INNCNVILRA 1179
            T+D+F+G GGLS G +++G  S K+A+E+     + ++ N P S ++   IN  N+    
Sbjct: 6    TVDLFSGVGGLSYGFEKAGFIS-KYAVEFNSSIAKGYEENFPHSKIINEDINTVNI---- 60

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                                     ++V  NL   G    I GGPPCQGFS   +  +  
Sbjct: 61   -------------------------KSVFGNLN--GDKTIIIGGPPCQGFS--QKGKRIG 91

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
             +  +  + L ++   +   P  F++ENV   ++   G      +  L  +GY +   +L
Sbjct: 92   LNDERNFLFLKYIECVEVINPIAFVIENVPGLLTNEGGFFLNEIIEKLQGLGYSLFERVL 151

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV Q+RKRAFI      +    WP                               
Sbjct: 152  NASDYGVPQNRKRAFIVGLRTENATFTWPTEFG--------------------------- 184

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
              + +T+ D I DLP + +G       Y+  PVS +Q ++RG ++ + +H+S + + L L
Sbjct: 185  --KKVTINDAISDLPILKSGEGSKSAGYRTAPVSDYQVKMRGTVSKVLNHVSTKHSPLVL 242

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             R + IP+  G    DLP E +  ST        WC                RL   G  
Sbjct: 243  ERLKLIPEDGGRT--DLPPEHLTKSTFSGT----WC----------------RLPANG-I 279

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
              +IT        GM   P QDR LTVRE AR Q FPDS++F G    +  Q+GNAVPP 
Sbjct: 280  ARTITTRFDTPSSGMFTLPRQDRCLTVREAARIQSFPDSFRFPGGKSTQMLQVGNAVPPL 339

Query: 1540 LAFALGRKLKEAV 1552
            LA A+G++L +++
Sbjct: 340  LAEAVGKQLMKSL 352


>gi|445113595|ref|ZP_21377620.1| DNA (cytosine-5-)-methyltransferase [Prevotella nigrescens F0103]
 gi|444841017|gb|ELX68037.1| DNA (cytosine-5-)-methyltransferase [Prevotella nigrescens F0103]
          Length = 349

 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 194/431 (45%), Gaps = 89/431 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINN-CNVILRA 1179
            +   D+FAG GGLS+G  ++G      AIE+++    +++ NHP++ + +++ CN+  + 
Sbjct: 1    MKVADLFAGVGGLSQGFIKAGFE-IAIAIEHDKDIAYSYQRNHPQTDVYVDDICNLDFKE 59

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            + +K                                Q+D + GGPPCQGFS   +  + +
Sbjct: 60   IHKKHP------------------------------QIDVVMGGPPCQGFSQKGK--RLS 87

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
             +  +  +   F+ F + F+P+YF+LENV N ++   G        +   +GY+V  G+L
Sbjct: 88   INDPRNFLFKQFVRFVEEFKPKYFVLENVPNIITTANGFFRNEINGAFNALGYEVCSGVL 147

Query: 1300 EAGAFGVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
             A  FGV Q R+RA FI   S  +   + P+P+                           
Sbjct: 148  HAVDFGVPQDRRRAVFIGQLSKLEV--DLPKPIG-------------------------- 179

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
               +  TVRD I DLP + +G  +    Y   P +  QK +RG   VL +H++   + + 
Sbjct: 180  ---KKNTVRDAIYDLPFIESGQGEEESTYDKQPTTDLQKDLRGKCKVLHNHVATNHSPVA 236

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            L R + +P   G               G+V       LP   +  + + G + RL  E  
Sbjct: 237  LRRMEMVPIGEG---------------GKV-------LPQEERTKSIYSGTWCRL-LENE 273

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
               +IT        G   HP  +R +T RE AR Q FPDS+ F+G+   + +Q+GNAVPP
Sbjct: 274  VAATITTRYDTPSSGRFTHPLLNRCITTREAARIQTFPDSFIFYGNKTCQMKQVGNAVPP 333

Query: 1539 TLAFALGRKLK 1549
             LA+A+   +K
Sbjct: 334  YLAYAIASVIK 344


>gi|422024086|ref|ZP_16370586.1| cytosine-specific methyltransferase [Providencia sneebia DSM 19967]
 gi|414091279|gb|EKT52966.1| cytosine-specific methyltransferase [Providencia sneebia DSM 19967]
          Length = 353

 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 186/433 (42%), Gaps = 86/433 (19%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F GCGGLS G +Q G   T   I++++ A + FKLNH ++  ++            
Sbjct: 4    VVDLFCGCGGLSYGFEQEGFK-TVLGIDHDKAALKTFKLNHKDAKTIL------------ 50

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQSTW 1240
              GD  +  +     +L                 +D + GGPPCQG S  G  +      
Sbjct: 51   --GDIREISNQQILDKLNGC-------------SIDVVIGGPPCQGLSLSGPRKLEDP-- 93

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               + ++ L+F+       P+Y L+ENV   +S  KG+     + SL  +GY V F +L+
Sbjct: 94   ---RNQLYLSFIRIVSLLNPKYVLIENVPGIISLFKGKIKDEIIKSLETLGYTVNFQVLK 150

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q R+R F       +   ++P P H                            
Sbjct: 151  ASEYGVPQHRRRVFFIGTKAMEKF-DFPLPTH---------------------KEQEDLI 188

Query: 1361 FRAM-TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            F+ M +  D + DLP + N   +TI EY     + +Q+ +R N + + +HI+   +E   
Sbjct: 189  FKKMISTYDALHDLPVLENELGETIQEYALPIQNAYQELMRFNSSHVLNHIAANHSEKVK 248

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
               + +P  PG ++  LP+E                L N+   +  W            F
Sbjct: 249  ETIKLVP--PGKNYKALPEE----------------LKNSRNFNVAWT----------RF 280

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            P     P         FH   +R+ TVRECAR Q FPD ++F G+   + RQ+GNAVPP 
Sbjct: 281  PDHAPSPTIDTGHRHHFHYYANRVPTVRECARLQSFPDRFEFIGNKTEQFRQVGNAVPPI 340

Query: 1540 LAFALGRKLKEAV 1552
            LA AL +K+ E +
Sbjct: 341  LAQALAKKILEKL 353


>gi|448677074|ref|ZP_21688568.1| MHphi(C) [Haloarcula argentinensis DSM 12282]
 gi|445774722|gb|EMA25737.1| MHphi(C) [Haloarcula argentinensis DSM 12282]
          Length = 379

 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 188/438 (42%), Gaps = 89/438 (20%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +DIF G GGLS G  ++G +     I+  E + E F+ NH        +C  I+     
Sbjct: 9    VIDIFCGAGGLSAGFSKAGYNIIT-GIDNNENSIETFRANH--------DCEPIV----- 54

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              GD +   + S+  +  +    N+ N       VD + GGPPC+GFS  N  + S    
Sbjct: 55   --GDIQREGAISDIKDSVSQNGSNIEN-------VDLVIGGPPCRGFSMANVRSDSAEHP 105

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
            +  E+   FL       P   L+ENV   ++   G+     +A L EMGY    G+LEA 
Sbjct: 106  LN-ELPARFLEIVQEINPEAVLIENVPRLLTIADGKFKESIIARLEEMGYSTTHGVLEAE 164

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             FGV Q R+R F                 H    PEL       +Q              
Sbjct: 165  KFGVPQKRRRVFFIG--------------HKSVEPELPTQGEFKFQM------------- 197

Query: 1363 AMTVRDTIGDLPAVGNGASKTI-MEY--QNDPVSWFQKRIRGN--MAVLTDHISKEMNEL 1417
             +TV+  I DLP +  G    + MEY   N  +S +  ++R N   +++ +H +    E 
Sbjct: 198  PVTVKQAISDLPELPTGGGGEMRMEYSPNNSGISEYVAKMRRNEKKSIVMNHRTTRNQEK 257

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
               R + IP+  G +W D+P++ +K               N   R      ++ RLD + 
Sbjct: 258  TYRRFKHIPQ--GGNWRDIPEDLMK---------------NYTNRQQTHDHIYQRLDED- 299

Query: 1478 NFPTSITDPQPMGKVG-----MCFHPDQDRILTVRECARSQGFPDSYQFHG-SIQHKHRQ 1531
                     +P   V      M  HP Q+R+L+VRE AR Q FPD Y F G S   + + 
Sbjct: 300  ---------EPAKTVANFRKQMIVHPTQNRLLSVREAARLQSFPDDYHFKGSSFNARQQM 350

Query: 1532 IGNAVPPTLAFALGRKLK 1549
            +G+AVP  LA+++G+ L+
Sbjct: 351  VGDAVPVNLAYSIGKSLQ 368


>gi|302900266|ref|XP_003048231.1| hypothetical protein NECHADRAFT_39810 [Nectria haematococca mpVI
            77-13-4]
 gi|256729163|gb|EEU42518.1| hypothetical protein NECHADRAFT_39810 [Nectria haematococca mpVI
            77-13-4]
          Length = 1354

 Score =  154 bits (390), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 193/469 (41%), Gaps = 56/469 (11%)

Query: 1100 CIEGEDELEVEKQGGASQE--NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGE 1157
            C+  E      KQG    E    L  LD+F G G    GL+  G    +WA ++ E A  
Sbjct: 800  CVPLETFPTTLKQGFDPSEPIQRLRGLDLFCGGGNFGRGLEDGGGIEMRWANDFNEKAMH 859

Query: 1158 AFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQV 1217
             +  N                AV    G  ++    +   E A        NN+PL G V
Sbjct: 860  TYMAN-----------TAGPGAVSPFLGSIDELQRLAIQGEFA--------NNVPLVGDV 900

Query: 1218 DFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS--FN 1275
            DFI+GG PC GFS +     +   +    ++ AF SF D ++PRY LLENV   V    N
Sbjct: 901  DFISGGSPCPGFSLLTNDKTTITQRKNQSLVAAFGSFIDLYRPRYGLLENVPGIVQRKSN 960

Query: 1276 KGQ-TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
            + Q  F   + +++ +GYQ  F  L+A A G  Q R R F+  A+P   LP  P P H  
Sbjct: 961  RDQDVFSQLICAIVGLGYQTHFFFLDASACGSPQRRARVFLAFAAPGHRLPRRPNPTHAH 1020

Query: 1335 AAPELKIMLSD--NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPV 1392
                    L +    +  A R   +  PF  ++ +    DLP V +      + + +  +
Sbjct: 1021 PPHTNSFGLGNLPTGEPMAERIIPSATPFDFVSAQAATADLPPVYDSKPDICIPFPDHRI 1080

Query: 1393 SWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRP-----GADWHDLPDEKVKLSTGQ 1447
            S    R   N                  + + IP RP        W+  PD K K  TG 
Sbjct: 1081 SLGATRGLRN------------------KIKLIPTRPYGMNFAQAWYG-PDRK-KAGTGV 1120

Query: 1448 VVD----LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDR 1502
            +      + P    ++  R N W   +GR   +    T +T   P   K G   H  +DR
Sbjct: 1121 LTPAERLVFPADSASSLSRSNPWSNAYGRQRPDRLIETVVTSQSPSDAKNGRTLHWQEDR 1180

Query: 1503 ILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            +LT+ E  R+QGF D     GS   ++R +GN+V   +A +LG   +EA
Sbjct: 1181 VLTIMEARRAQGFRDHEVILGSPPDQYRVVGNSVAREVAVSLGAVFREA 1229


>gi|348546083|ref|XP_003460508.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like, partial
            [Oreochromis niloticus]
          Length = 183

 Score =  154 bits (389), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 85/109 (77%)

Query: 1447 QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTV 1506
            Q   LIPWCLP+T  RHN W GL+GRL+W+G F T++T+P+PMGK G   HP+Q R+++V
Sbjct: 56   QFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSV 115

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            RECARSQGFPD+Y+F G+I  KHRQ+GNAVPP L+ A+G ++K  +  +
Sbjct: 116  RECARSQGFPDTYRFFGNILDKHRQVGNAVPPPLSRAIGLEIKRCITER 164


>gi|228478395|ref|ZP_04063003.1| modification methylase HaeIII [Streptococcus salivarius SK126]
 gi|228250074|gb|EEK09344.1| modification methylase HaeIII [Streptococcus salivarius SK126]
          Length = 387

 Score =  153 bits (386), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 204/461 (44%), Gaps = 107/461 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISST---------KWAIEYEEPAGEAFKLNHPESLMLIN 1171
            +  +D+F+G GGL+ G Q +  ++          ++A E+   A EAF+LN+PE  M+  
Sbjct: 2    IEVIDLFSGAGGLTFGFQNTIKNNNFVFRNDFNIRFANEFNRDAAEAFRLNYPEITMI-- 59

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPL-PGQVDFINGGPPCQGFS 1230
                            ED +         A++DE+ + +  + P  VD + GGPPCQ FS
Sbjct: 60   ----------------EDDI---------ANIDESFLKSKGISPKGVDLVIGGPPCQSFS 94

Query: 1231 GMNRFNQSTWSKVQCEM--ILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLA 1285
             + +      +K+  E   IL+F+      QP+ F+ ENV   ++      G   R    
Sbjct: 95   TVGKRQYDKRAKMYREYRRILSFI------QPKMFVFENVYGLLTMKNEQNGPIIRNVKE 148

Query: 1286 SLLEM-------GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL-PEWPEPMHVFAAP 1337
            S  ++       GY V   ++ A  FGV Q+R+R F+        +  EW  P       
Sbjct: 149  SFNDLSSFGDVSGYNVYTKLINAKDFGVPQNRERVFLIGVRKDLKIKSEWIFPEETSLNN 208

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK 1397
            E+                         T+RD I DLP +GN   K    Y  +P + +Q 
Sbjct: 209  EI-------------------------TLRDAISDLPILGNNEQK--YNYICEPKTEYQA 241

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPG-----ADWHDLPDEKVKLSTGQVVDLI 1452
             +RGN   L +H+S+   E    R QKI +  G     +D + + ++      GQ + L 
Sbjct: 242  LLRGNQTDLLNHVSRNHGE----RLQKIMRALGEGQGKSDINKMVEDG---ELGQDLYLT 294

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
                       + +   +GRL W+    T+IT+         C HP+Q+R LT RE AR 
Sbjct: 295  -----------SGYNNTYGRLWWDRP-STTITNNLSTPSSLRCIHPEQNRALTAREGARI 342

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            Q FPD+Y+F G +Q  + QIGNAVPP L+  L  ++K+  E
Sbjct: 343  QSFPDNYKFVGGLQAINTQIGNAVPPILSIHLANRIKKFFE 383


>gi|341819908|emb|CCC56122.1| DNA (cytosine-5-)-methyltransferase [Weissella thailandensis fsh4-2]
          Length = 357

 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 193/433 (44%), Gaps = 84/433 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GG S+G +     +T  A ++ EPA   F  N P S ++  +           
Sbjct: 6    LDLFSGAGGFSKGFEMIPGFTTVVASDFNEPALMTFHKNFPLSKIIFGDI---------- 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                     TSE  + A  + +N +       +V+ I GGPPCQGFS  N+  +      
Sbjct: 56   ---------TSEKVKQA--IVKNAVET-----KVNMIIGGPPCQGFS--NKGKKLGLDDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L +L   +  QP  F++ENV+  ++   G   +  +  +  +GY+V + IL A  
Sbjct: 98   RNFLFLEYLEMVNRLQPEVFVIENVKAMLTAVNGYFIKEIVDRINALGYKVNYSILSASN 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RA I AA   D   + P P          + +++                  
Sbjct: 158  YGVPQNRQRAIIIAAK--DKKIKMPVPT---------VGINNK----------------- 189

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA-VLTDHISKEMNELNLIRC 1422
             TVRD I DL  + +G  + I +Y+    S +Q  +R N   +L +HI+   +++ L + 
Sbjct: 190  TTVRDAISDLSYLNSGEGEMISQYRKPSESNYQTMMRANSGNILYNHIATSHSQIALDKL 249

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
              IP   G ++                      LP     + ++K  +GRL+W+   PT 
Sbjct: 250  AMIPPEKGKEY----------------------LPRELWGNQKFKTTWGRLEWDKQAPTI 287

Query: 1483 IT--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
             T  D    GK     HP  +R +T RE AR Q FPD ++F G   H  +QIGNAVPP +
Sbjct: 288  DTRFDTPSNGKNS---HPYLNRAITPREAARIQSFPDDFEFIGKKSHITKQIGNAVPPLM 344

Query: 1541 AFALGRKLKEAVE 1553
              A+   +K  V+
Sbjct: 345  GKAIAETIKNQVK 357


>gi|331085773|ref|ZP_08334856.1| hypothetical protein HMPREF0987_01159 [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330406696|gb|EGG86201.1| hypothetical protein HMPREF0987_01159 [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 356

 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 184/433 (42%), Gaps = 84/433 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+FAGCGGLS+G   +G +     ++ ++ A   F  NH        N  V L A 
Sbjct: 1    MNAIDLFAGCGGLSKGFMDAGYNII-VGVDNDQAALNTFAKNH--------NGAVALNAD 51

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            + K                  + DE  I  +    ++D I  GPPCQGFS     N   +
Sbjct: 52   LSK----------------QETFDE--IKRIAGKRKIDVIIAGPPCQGFSLTGPRN---F 90

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               + ++ LA +     +QP+ F++ENV    +  KGQ     L    +MGY +   IL 
Sbjct: 91   DDERNKLYLAVIEMVKQYQPKAFIIENVPGMATLYKGQIKDEILRRFKKMGYNIECRILC 150

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q RKR            P++PE   V   PE       NY             
Sbjct: 151  AADYGVPQIRKRLIFMGIRKDIGAPKFPE---VKLTPE-------NY------------- 187

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               +T R  + DLP++ N       EY  +P + +Q+ +RGN  VL +H+     ++   
Sbjct: 188  ---ITCRAAVSDLPSLQNDLGMEEAEYIREPQTEYQRLMRGNCTVLHNHLGTNHTQMVKD 244

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                +P+  G ++ DLP+               W    + K H  W  L       GN P
Sbjct: 245  TIALVPE--GGNYKDLPEG--------------WG--ESRKFHMAWTRL------NGNAP 280

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
                D    G   + FH + +R+ TVRE AR Q FPD + F G+   + RQ+GNAVPP L
Sbjct: 281  ARTVD---TGHRNL-FHYEYNRVPTVRESARMQSFPDDFVFLGTKTQQSRQVGNAVPPLL 336

Query: 1541 AFALGRKLKEAVE 1553
              ALG  L   ++
Sbjct: 337  GQALGETLLTIIQ 349


>gi|384244940|gb|EIE18436.1| S-adenosyl-L-methionine-dependent methyltransferase, partial
            [Coccomyxa subellipsoidea C-169]
          Length = 418

 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 175/400 (43%), Gaps = 65/400 (16%)

Query: 1217 VDFINGGPPCQGFSGMNRFNQST--WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            VD + GGPPCQG SG+NR  +     +  +   + AF    ++FQP Y L+ENV +    
Sbjct: 2    VDAVMGGPPCQGVSGLNRHAKRADIVNDPRNRQVQAFYDVIEWFQPGYVLMENVLDIFKK 61

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHV 1333
              G   +   + LL M YQ R G + A   G  Q R RAF+W A    + LP +PEP H 
Sbjct: 62   QDGMYAKFAASRLLNMRYQTRLGCIAACDHGAPQGRWRAFMWGAKAGVEQLPAFPEPSH- 120

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANGAPFRAMT-VRDTIGDLPAVGNGASKTIMEYQNDPV 1392
            FA  +  +  S +       S A+    R M  + D + DLP + N  +    +Y +DP 
Sbjct: 121  FAVFQGGVPHSASECIVGFTSEASRDAARQMVFMGDVLSDLPEISNYTTAEAAQYASDPK 180

Query: 1393 SWFQKRIRGN---------------------MAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
            + +Q  +R                       +  L DH S  +N  + +RC  +P +  A
Sbjct: 181  TPYQMWLRRQPPAVHMFDEQVLKEAEHAEKAVGPLRDHRSLCLNFDDHLRCCSVPSKKDA 240

Query: 1432 DWHDL-------------------PDEKVKLSTGQVVDLIP-WCLPNTAKRHNQWKGLFG 1471
            ++ ++                   P   V L TG +  L P WC+     +     G FG
Sbjct: 241  NFREMPGVITHGDGAVCGVVGAGCPGTTVFLPTGDL--LCPRWCVTYKQGKSGGRHGCFG 298

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH-- 1529
            R+ ++   PT +   +P        HP Q R++++RE AR QGFPD +   G I H H  
Sbjct: 299  RMWYDEIQPTVVGRAEPHNL--RLIHPTQGRVVSIRENARCQGFPDYFALAG-ISHAHQD 355

Query: 1530 ------------RQIGNAVPPTLAFALGRKLKEAVESKRS 1557
                        +Q+GNAV P +A ALGR L  A   + S
Sbjct: 356  TWVRNNNLTERYQQMGNAVSPLVADALGRCLGIAARGRFS 395


>gi|322372404|ref|ZP_08046940.1| modification methylase DdeI [Streptococcus sp. C150]
 gi|321277446|gb|EFX54515.1| modification methylase DdeI [Streptococcus sp. C150]
          Length = 387

 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 204/458 (44%), Gaps = 101/458 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISST---------KWAIEYEEPAGEAFKLNHPESLMLIN 1171
            +  +D+F+G GGL+ G Q +  ++          ++A E+   A EAF+LN+P+  M+  
Sbjct: 2    IEVIDLFSGAGGLTFGFQNTIKNNNFVFRNDFNIRFANEFNRDAAEAFRLNYPKITMI-- 59

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFS 1230
                            ED +         A++DE+ + +  +  + VD + GGPPCQ FS
Sbjct: 60   ----------------EDDI---------ANIDESFLKSKGISSKGVDLVIGGPPCQSFS 94

Query: 1231 GMNRFNQSTWSKVQCEM--ILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLA 1285
             + +      +K+  E   IL+F+      QP+ F+ ENV   ++      G   R    
Sbjct: 95   TVGKRQYDKRAKMYREYRRILSFI------QPKMFVFENVYGLLTMKNEQNGPIIRNVKE 148

Query: 1286 SLLEM-------GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTL-PEW--PEPMHVFA 1335
            S  ++       GY V   ++ A  FGV Q+R+R F+        +  EW  PE M    
Sbjct: 149  SFNDLSSFGDVSGYNVYTKLINAKDFGVPQNRERVFLIGVRKDLKIKSEWIFPEAM---- 204

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                               T N      +T+RD I DLP +GN   K    Y  +P + +
Sbjct: 205  -------------------TLNN----EITLRDAISDLPILGNNEQK--YNYICEPRTEY 239

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC 1455
            Q  +RGN   L +H+S+   E    R QKI +  G       + + K    ++V+     
Sbjct: 240  QALLRGNQTELLNHVSRNHGE----RLQKIMRALG-------EGQGKNDINRMVE--DGI 286

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
            L       + +   +GRL W+    T+IT+         C HP Q+R LT RE AR Q F
Sbjct: 287  LDKDLYLTSGYNNTYGRLWWDKP-STTITNNLSTPSSLRCIHPSQNRALTAREGARIQSF 345

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            PD+Y+F G +Q  + QIGNAVPP L+  L  ++K+  E
Sbjct: 346  PDNYKFVGGLQAINTQIGNAVPPILSIHLANRIKDFFE 383


>gi|386748699|ref|YP_006221907.1| cytosine specific DNA methyltransferase [Helicobacter cetorum MIT
            99-5656]
 gi|384554941|gb|AFI06697.1| cytosine specific DNA methyltransferase [Helicobacter cetorum MIT
            99-5656]
          Length = 355

 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 184/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+      T   +++++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLEHLKDFKTLIGLDFDKQALNTFQNNHKNAVCI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  +    S+  + A +L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITEQEIKSQVVQHAKNL------------KINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG       A    +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKAKFHALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV QSR+RAFI  A                            + ++ +       P ++
Sbjct: 158  YGVPQSRERAFIVGARHFS------------------------FDFNCLE------PLKS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            ++V++ I DL  + +        Y N   S +Q  +R +   L +H +   +++ L + +
Sbjct: 188  VSVKEAISDLAYLNSNEGAFESSYLNPIQSNYQALMRKDSTRLYNHKATNHSQVALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F DSY F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDSYIFYGNKTSICKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSM 353


>gi|389640887|ref|XP_003718076.1| modification methylase DdeI [Magnaporthe oryzae 70-15]
 gi|351640629|gb|EHA48492.1| modification methylase DdeI [Magnaporthe oryzae 70-15]
          Length = 1294

 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 159/616 (25%), Positives = 254/616 (41%), Gaps = 94/616 (15%)

Query: 957  GETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDI 1016
            GET  AG    L+PYV+    E                   RR  R  ++  + +  +  
Sbjct: 605  GETVLAGDKSRLEPYVITGFFE-------------HGTANFRRLSRRAEV--DPSSSAPP 649

Query: 1017 REVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQ-----HIFFCEHL--HDPSKG 1069
             E+ Y+EE   +    I   C +R   + P    P  +      + FF       D S  
Sbjct: 650  NELIYTEEIIRLPASDIRSPCTIRVFTNNPQV-IPTPYDRRGTGNCFFIRFKLETDASLV 708

Query: 1070 SLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAG 1129
            ++ ++P   K     G L  +   R+ K K + G                    LD+FAG
Sbjct: 709  AMTEVPPIFK----QGFLPQKQGRRKSKPKPLRG--------------------LDLFAG 744

Query: 1130 CGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML---INNCNVILRAVMEKCGD 1186
            CG L  G+++ G    KW  +    A   +  N  +   +   + + +++L   +++ G 
Sbjct: 745  CGNLGRGIEEGGAVEVKWVNDIWTNAIHTYMANTNDKSAVKPFLGSVDLLLEKALKRDGS 804

Query: 1187 AEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCE 1246
              D      +    + LD +V    P  G+V+FI+GG PCQGFS +   N+S   +V+  
Sbjct: 805  VLDGSVLDGSVLDGSVLDGSV----PSRGEVEFISGGSPCQGFSLLT-VNKSDDRQVKNR 859

Query: 1247 MILA-FLSFADYFQPRYFLLENVRNFVSFN---KGQTFRLTLASLLEMGYQVRFGILEAG 1302
             ++A F SF D+++P+Y LLENV N V+ N             +L+ +GYQV+  + +A 
Sbjct: 860  SLVASFASFVDFYRPKYGLLENVTNMVNANVRPDCDYLSQLFCALVGLGYQVQIILGDAW 919

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWP--EPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            ++G  Q R R F+  A     LP+ P     H  A P   I   +N +    R  ++ A 
Sbjct: 920  SYGAPQQRSRIFLSFARADFQLPQIPTRSHSHTAAIPSRAIGYLNNGERFVERQFSSTA- 978

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            FR +T  + I DLP +G+G    I                       DH   + + +  +
Sbjct: 979  FRYVTSGEAIDDLPKIGDGRQICI--------------------PFPDHRPNKESFVAQV 1018

Query: 1421 RCQKIPKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPN---TAKRHNQWKGLFGRLDWE 1476
            R   IP  P G  +           TG++ +      P    TA+R    +G + RL   
Sbjct: 1019 RIAHIPVTPYGIGFVQ------AYQTGRITEAERQIFPADTLTAERTRCGRG-WSRLSPN 1071

Query: 1477 GNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
              F T  T P     + G   HP + R LT+ E  R+QG PD+    G  + + + +GN+
Sbjct: 1072 KLFQTITTTPNHTDSRTGCQIHPSEQRTLTIMEVRRAQGVPDNEVLVGQFRDRWKLVGNS 1131

Query: 1536 VPPTLAFALGRKLKEA 1551
            V    A ALG +L+ A
Sbjct: 1132 VARQAALALGLELRRA 1147


>gi|440475172|gb|ELQ43873.1| modification methylase DdeI [Magnaporthe oryzae Y34]
 gi|440487101|gb|ELQ66907.1| modification methylase DdeI [Magnaporthe oryzae P131]
          Length = 1289

 Score =  151 bits (381), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 158/617 (25%), Positives = 257/617 (41%), Gaps = 101/617 (16%)

Query: 957  GETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDI 1016
            GET  AG    L+PYV+    E                   RR  R  ++  + +  +  
Sbjct: 605  GETVLAGDKSRLEPYVITGFFE-------------HGTANFRRLSRRAEV--DPSSSAPP 649

Query: 1017 REVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQ-----HIFFCEHL--HDPSKG 1069
             E+ Y+EE   +    I   C +R   + P    P  +      + FF       D S  
Sbjct: 650  NELIYTEEIIRLPASDIRSPCTIRVFTNNPQV-IPTPYDRRGTGNCFFIRFKLETDASLV 708

Query: 1070 SLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAG 1129
            ++ ++P   K  +    L  +   R+ K K + G                    LD+FAG
Sbjct: 709  AMTEVPPIFKQSF----LPQKQGRRKSKPKPLRG--------------------LDLFAG 744

Query: 1130 CGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML---INNCNVILRAVMEKCGD 1186
            CG L  G+++ G    KW  +    A   +  N  +   +   + + +++L   +++ G 
Sbjct: 745  CGNLGRGIEEGGAVEVKWVNDIWTNAIHTYMANTNDKSAVKPFLGSVDLLLEKALKRDGS 804

Query: 1187 AEDCVSTSEAAELAASLDENVIN-NLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQC 1245
              D           + LD +V++ ++P  G+V+FI+GG PCQGFS +   N+S   +V+ 
Sbjct: 805  VLD----------GSVLDGSVLDGSVPSRGEVEFISGGSPCQGFSLLT-VNKSDDRQVKN 853

Query: 1246 EMILA-FLSFADYFQPRYFLLENVRNFVSFN---KGQTFRLTLASLLEMGYQVRFGILEA 1301
              ++A F SF D+++P+Y LLENV N V+ N             +L+ +GYQV+  + +A
Sbjct: 854  RSLVASFASFVDFYRPKYGLLENVTNMVNANVRPDCDYLSQLFCALVGLGYQVQIILGDA 913

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWP--EPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             ++G  Q R R F+  A     LP+ P     H  A P   I   +N +    R  ++ A
Sbjct: 914  WSYGAPQQRSRIFLSFARADFQLPQIPTRSHSHTAAIPSRAIGYLNNGERFVERQFSSTA 973

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
             FR +T  + I DLP +G+G    I                       DH   + + +  
Sbjct: 974  -FRYVTSGEAIDDLPKIGDGRQICI--------------------PFPDHRPNKESFVAQ 1012

Query: 1420 IRCQKIPKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPN---TAKRHNQWKGLFGRLDW 1475
            +R   IP  P G  +           TG++ +      P    TA+R    +G + RL  
Sbjct: 1013 VRIAHIPVTPYGIGFVQ------AYQTGRITEAERQIFPADTLTAERTRCGRG-WSRLSP 1065

Query: 1476 EGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
               F T  T P     + G   HP + R LT+ E  R+QG PD+    G  + + + +GN
Sbjct: 1066 NKLFQTITTTPNHTDSRTGCQIHPSEQRTLTIMEVRRAQGVPDNEVLVGQFRDRWKLVGN 1125

Query: 1535 AVPPTLAFALGRKLKEA 1551
            +V    A ALG +L+ A
Sbjct: 1126 SVARQAALALGLELRRA 1142


>gi|431758608|ref|ZP_19547233.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium E3083]
 gi|430616976|gb|ELB53862.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium E3083]
          Length = 352

 Score =  150 bits (380), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 184/434 (42%), Gaps = 100/434 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GGLS G + +G +     I+ +E A   FK+NH  S +L           
Sbjct: 5    LNIIDLFSGAGGLSYGFELAGFN-VLLGIDNDETALNTFKMNHKNSEIL----------- 52

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG--FSGMNRFNQS 1238
               CGD  +   T +   +                ++D I GGPPCQG   SG  +F   
Sbjct: 53   ---CGDITEVSYTKDIKPIIGD------------KRIDVIVGGPPCQGMSLSGPRKFEDP 97

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 + ++ L+++      +P+ F++ENV   VS  KGQ     L    EMGY V+F I
Sbjct: 98   -----RNKLYLSYIRLVKEIKPKAFVIENVIGIVSLFKGQIKNHILKEFSEMGYNVQFKI 152

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +GV Q RKR  I+  +  +    +P P+                           
Sbjct: 153  LLASDYGVPQKRKRV-IFVGTLAEKEFTYPNPVDY------------------------- 186

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                 +T    I DLP++ N    T M+Y   P + +Q  +R +   + +HI+   N  N
Sbjct: 187  ----TITTEMAISDLPSLENELGDTEMDYLTAPQNSYQSLMRKSSRKVYNHIAA--NHSN 240

Query: 1419 LIR--CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
             I+     +P   G ++ DLP+E                   T K +  W          
Sbjct: 241  RIKEIISLVPD--GGNYKDLPEE----------------FRETRKFNVAWT--------- 273

Query: 1477 GNFPTSITDPQPMGKVG--MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
              FP++   P P    G    FH   +R+ TVRE AR Q FPDS+ F GS   + +Q+GN
Sbjct: 274  -RFPSN--KPSPTIDTGHRHHFHYKYNRVPTVRESARLQSFPDSFIFTGSKTQQFKQVGN 330

Query: 1535 AVPPTLAFALGRKL 1548
            AVPP +A A+  KL
Sbjct: 331  AVPPLMAKAIAEKL 344


>gi|206975132|ref|ZP_03236046.1| modification methylase HaeIII [Bacillus cereus H3081.97]
 gi|206746553|gb|EDZ57946.1| modification methylase HaeIII [Bacillus cereus H3081.97]
          Length = 352

 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 189/430 (43%), Gaps = 90/430 (20%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              +D+FAG GGLS G +Q G      A EY+E    A+K NH  + M++ +         
Sbjct: 4    TVIDLFAGVGGLSLGFEQEGFEVV-LANEYDESIANAYKKNHRNTKMIVGDI-------- 54

Query: 1182 EKCGDAEDCVSTSEAAELAASLD-ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                               A LD +NV    P  G++D I GGPPCQGFS   +  + T 
Sbjct: 55   -------------------AELDIKNVF--CPYVGKIDVIIGGPPCQGFS--QKGQRKTI 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE-MGYQVRFGIL 1299
            +  +  +   F+S     +P YF++ENV N ++  KG  F+  +  L + +GY +  G+L
Sbjct: 92   NDDRNFLFKYFVSVVGLIKPMYFVMENVPNLLTAEKGY-FKKEIYDLFKSLGYSLSSGVL 150

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
             A  FGV Q+RKRA I         P E+P+P +                          
Sbjct: 151  NAADFGVPQNRKRAVIIGK--RGLAPAEFPKPKN-------------------------- 182

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                  T+ D I DL  + +G    + +Y+    S++Q+ +R     L +H++   +++ 
Sbjct: 183  ---EKNTIWDAISDLAFLESGEGNEVQDYRKAAESFYQQVMRKKSTQLYNHVATNHSKVA 239

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            L R + IP  P A    LP E +  S                     + G + R+  +  
Sbjct: 240  LERLKLIP--PNAGREVLPKEHLTKSI--------------------YSGTWTRMRKD-E 276

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
               ++T        G   HP  +R +TVRE AR Q FPD ++F G+   + +Q+GNAVPP
Sbjct: 277  VSVTVTTRFDTPSSGKFTHPFLNRAITVREAARIQSFPDDFRFFGTKTSQMKQVGNAVPP 336

Query: 1539 TLAFALGRKL 1548
             LA A+ + +
Sbjct: 337  MLANAIAKTI 346


>gi|153814224|ref|ZP_01966892.1| hypothetical protein RUMTOR_00433 [Ruminococcus torques ATCC 27756]
 gi|145848620|gb|EDK25538.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus torques ATCC 27756]
          Length = 702

 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 190/430 (44%), Gaps = 81/430 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GG+S G++++   +T+ A+++ E A + FK N P++  +              
Sbjct: 353  LDLFSGAGGMSYGMEKNEHFTTEVALDFNEKALQTFKHNMPDTETV-------------- 398

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  D    ++  EL  +             +V+ I GGPPCQGFS   +  +      
Sbjct: 399  CGDITDEKIKAKVIELCKA------------KKVNMIIGGPPCQGFSLKGK--KLGLDDP 444

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L F +  +P  F++ENV+  +S + G      +  + EMGY V +G+L A  
Sbjct: 445  RNFLFNEYLRFVEILKPEVFVIENVKALLSTSAGWFKDQIIKKVTEMGYHVEYGVLTASD 504

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FGV Q+R+RA I+  S + ++   P P      P                          
Sbjct: 505  FGVPQARQRA-IFICSKNKSI---PLPAATCETP-------------------------- 534

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +TVRD I DL  + +G  +   +Y  +P S +QK++R     L +H +     + + + +
Sbjct: 535  VTVRDAIYDLAYLNSGEGEFEQDYITEPSSEYQKQMRRGSKKLYNHKASNHAAIAIKKLE 594

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP   G +                       LP+    + Q+ G +GRL W+   PT I
Sbjct: 595  MIPPECGKEH----------------------LPSDMVGNQQFSGTWGRLKWDAVSPT-I 631

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP   R +T RE AR Q F D + F G   +  +QIGNAVPP +A A
Sbjct: 632  DTRFDASSNGTNNHPFLHRAITPREAARIQSFDDKFVFIGQKLYIRQQIGNAVPPLMAKA 691

Query: 1544 LGRKLKEAVE 1553
            +  ++   ++
Sbjct: 692  IADQIDNILQ 701


>gi|289167785|ref|YP_003446054.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907352|emb|CBJ22189.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 351

 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 189/431 (43%), Gaps = 101/431 (23%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGLS G + +G +     I+ +E A E F+ NH  S +L              
Sbjct: 7    VDLFSGAGGLSYGFEMAGFN-VLLGIDNDEKALETFQKNHQNSEIL-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQ--VDFINGGPPCQG--FSGMNRFNQST 1239
            CGD  +            S +E++    P+ G+  +D I GGPPCQG   SG  +F+   
Sbjct: 52   CGDIANI-----------SYEEDI---KPIIGEQKIDIIVGGPPCQGMSLSGPRKFDDP- 96

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                + ++ L+++      QP  F++ENV   VS  KGQ     +    +MGY+V+F +L
Sbjct: 97   ----RNKLYLSYIRLVREIQPTAFVIENVIGIVSLFKGQIKDTIIEEFSKMGYKVQFKVL 152

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV Q+RKR  I+  + +D   E+PE +      E+                    
Sbjct: 153  LASDYGVPQNRKRV-IFVGTRNDEF-EYPEALGTIITTEM-------------------- 190

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                      I DLP + N   +  M Y ++P + +QK +R    V+ +H++ + +E  +
Sbjct: 191  ---------AISDLPTLENELGEIEMSYVSEPQNDYQKLMRKRSNVVLNHVAAKHSEKVI 241

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                 +P   G ++ +LP+E  +     V     W       R   WK            
Sbjct: 242  STIALVPD--GGNYKNLPEELRETRKFNVA----WT------RFASWK------------ 277

Query: 1480 PTSITDPQPMGKVG--MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
                  P P    G    FH   +R+ TVRE AR Q FPD + F+GS   + RQ+GNAVP
Sbjct: 278  ------PAPTIDTGHRHHFHYKYNRVPTVRESARLQSFPDDFIFYGSKTQQFRQVGNAVP 331

Query: 1538 PTLAFALGRKL 1548
            P +A  +   L
Sbjct: 332  PLMAQQIANNL 342


>gi|148988375|ref|ZP_01819822.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
            SP6-BS73]
 gi|418166559|ref|ZP_12803215.1| DNA-cytosine methyltransferase family protein [Streptococcus
            pneumoniae GA17971]
 gi|421211039|ref|ZP_15668023.1| modification methylase DdeI [Streptococcus pneumoniae 2070035]
 gi|421231707|ref|ZP_15688352.1| modification methylase DdeI [Streptococcus pneumoniae 2080076]
 gi|147926056|gb|EDK77130.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
            SP6-BS73]
 gi|353830155|gb|EHE10285.1| DNA-cytosine methyltransferase family protein [Streptococcus
            pneumoniae GA17971]
 gi|395573762|gb|EJG34349.1| modification methylase DdeI [Streptococcus pneumoniae 2070035]
 gi|395596197|gb|EJG56419.1| modification methylase DdeI [Streptococcus pneumoniae 2080076]
          Length = 351

 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 188/431 (43%), Gaps = 101/431 (23%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGLS G + +G +     I+ +E A E F+ NH  S +L              
Sbjct: 7    VDLFSGAGGLSYGFEMAGFN-VLLGIDNDEKALETFQKNHQNSEIL-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQ--VDFINGGPPCQG--FSGMNRFNQST 1239
            CGD  +            S +E++    P+ G+  +D I GGPPCQG   SG  RF+   
Sbjct: 52   CGDIANI-----------SYEEDI---KPIIGEQKIDIIVGGPPCQGMSLSGPRRFDDP- 96

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                + ++ L+++      QP  F++ENV   VS  KGQ     +    +MGY+V+F +L
Sbjct: 97   ----RNKLYLSYIRLVREIQPTAFVIENVIGIVSLFKGQIKDTIIEEFSKMGYKVQFKVL 152

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV Q+RKR  I+  + +D   E+PE +      E+                    
Sbjct: 153  LASDYGVPQNRKRV-IFVGTRNDGF-EYPEALGTIITTEM-------------------- 190

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                      I DLP + N   +  M Y ++P + +QK +R    V+ +H++ + +E  +
Sbjct: 191  ---------AISDLPTLENELGEIEMSYVSEPQNDYQKLMRKRSNVVLNHVAAKHSEKVI 241

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                 +P   G ++ +LP E  +     V     W       R   WK            
Sbjct: 242  STIALVPD--GGNYKNLPKELRETRKFNVA----WT------RFASWK------------ 277

Query: 1480 PTSITDPQPMGKVG--MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
                  P P    G    FH   +R+ TVRE AR Q FPD + F+GS   + RQ+GNAVP
Sbjct: 278  ------PAPTIDTGHRHHFHYKYNRVPTVRESARLQSFPDDFIFYGSKTQQFRQVGNAVP 331

Query: 1538 PTLAFALGRKL 1548
            P +A  +   L
Sbjct: 332  PLMAQQIANNL 342


>gi|145218883|ref|YP_001129592.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM 265]
 gi|145205047|gb|ABP36090.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM 265]
          Length = 377

 Score =  150 bits (378), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 134/443 (30%), Positives = 188/443 (42%), Gaps = 88/443 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +++F G GGLS GL ++G      A E E      F LNHPE+ ML           
Sbjct: 5    LNAVELFCGAGGLSIGLSRAGFH-IALANEIEPDFAATFSLNHPETKML----------- 52

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                   ED      A E   SL   + +       V  ++GGPPCQGFS +   N+   
Sbjct: 53   ------NEDIHDIDFARE---SLKTGITD-------VTLVSGGPPCQGFSTVGSKNRRDE 96

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   +L       P Y + ENV  F     G+ +      L  MGY +   ILE
Sbjct: 97   ---RNSLFYEYLRAVAELNPLYVIFENVSGFKKMYDGEAYLALTTELRSMGYDLASSILE 153

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +G+ Q R+R  I     H      P P H F++ +L                  GA 
Sbjct: 154  ASDYGLPQRRQRTIIVGWKKHLPAVSLPSPTH-FSSEDL----------------FGGA- 195

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
             + +TV D I DLP +   A+ T  EY + P + +Q+R+RG +  LT+H S         
Sbjct: 196  -KKLTVMDAISDLPPLE--ANSTSNEYASSPKNDYQQRMRGEVEELTEHNSSNYG----T 248

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            + Q+I          +P+       G  VD +P  L    +  N ++  + RL     +P
Sbjct: 249  KMQEI-------LSLIPE-------GGTVDDLPLRL----RPKNYFRNTYARL-----YP 285

Query: 1481 TSITDPQPMGKVGM-----CFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            T +  P      G      C HP Q+R L+ RE AR QGF DSY F GS   K+ QIGNA
Sbjct: 286  T-LPSPTVTRNFGTPSSSRCVHPFQNRALSTREGARLQGFHDSYVFTGSKTSKNLQIGNA 344

Query: 1536 VPPTLAFALGRKLKEAVESKRST 1558
            VPP     +     E ++S R+T
Sbjct: 345  VPPIFGEVIA---NEIIKSIRAT 364


>gi|218134306|ref|ZP_03463110.1| hypothetical protein BACPEC_02199 [[Bacteroides] pectinophilus ATCC
            43243]
 gi|217991681|gb|EEC57687.1| DNA (cytosine-5-)-methyltransferase [[Bacteroides] pectinophilus ATCC
            43243]
          Length = 622

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 190/430 (44%), Gaps = 81/430 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GG+S G++++   +T+ A+++ E A + FK N P++  +              
Sbjct: 273  LDLFSGAGGMSYGMEKNEHFTTEVALDFNEKALQTFKHNMPDTETV-------------- 318

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  D    ++  EL  +             +V+ I GGPPCQGFS   +  +      
Sbjct: 319  CGDITDEKIKAKVIELCKA------------KKVNMIIGGPPCQGFSLKGK--KLGLDDP 364

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L F +  +P  F++ENV+  +S + G      +  + EMGY V +G+L A  
Sbjct: 365  RNFLFNEYLRFVEILKPEVFVIENVKALLSTSAGWFKDQIIKKVTEMGYHVEYGVLTASD 424

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FGV Q+R+RA I+  S + ++   P P      P                          
Sbjct: 425  FGVPQARQRA-IFICSKNKSI---PLPAATCETP-------------------------- 454

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +TVRD I DL  + +G  +   +Y  +P S +QK++R     L +H +     + + + +
Sbjct: 455  VTVRDAIYDLAYLNSGEGEFEQDYITEPSSEYQKQMRRGSKKLYNHKASNHAAIAIKKLE 514

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP   G +                       LP+    + Q+ G +GRL W+   PT I
Sbjct: 515  MIPPECGKEH----------------------LPSDMVGNQQFSGTWGRLKWDAVSPT-I 551

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP   R +T RE AR Q F D + F G   +  +QIGNAVPP +A A
Sbjct: 552  DTRFDASSNGTNNHPFLHRAITPREAARIQSFDDKFVFIGQKLYIRQQIGNAVPPLMAKA 611

Query: 1544 LGRKLKEAVE 1553
            +  ++   ++
Sbjct: 612  IADQIDNILQ 621


>gi|448585611|ref|ZP_21648004.1| DNA-cytosine methyltransferase [Haloferax gibbonsii ATCC 33959]
 gi|445726311|gb|ELZ77928.1| DNA-cytosine methyltransferase [Haloferax gibbonsii ATCC 33959]
          Length = 404

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/437 (29%), Positives = 184/437 (42%), Gaps = 90/437 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH----PESLMLINNCNVI 1176
            L  +D+FAG GGLS GL+++G      AI+ ++ A   F  N     PE ++        
Sbjct: 6    LTYVDLFAGAGGLSTGLERAGFELIH-AIDIDQDASATFANNREGWSPEEII-------- 56

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
                    GD  +     + +E+  ++  N          VD + GGPPCQGFS      
Sbjct: 57   --------GDIREV----DKSEIHDTVGRN---------SVDLVAGGPPCQGFS---EVV 92

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
                S  +  + + F+ + D  +P+  L ENVR   +  +G+       S   +GY V  
Sbjct: 93   SPDGSDERNHLFVNFIDWVDELEPQAALFENVRGIQNTAEGKFLDAVNDSFANIGYNVTH 152

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             ++ +  FGV Q R+R  + A    D+L   P         EL                 
Sbjct: 153  RVVTSSDFGVPQHRRRVVLLATK--DSLKHQP-----LGGFELN---------------- 189

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
               P +   V D IGDLP VG G  + I EY   P +  Q  +RG+   LT H +   + 
Sbjct: 190  ---PVKTPGVIDGIGDLPEVGPG--EEITEYDQSPQTVLQNDLRGDSDELTAHQAARHDA 244

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
              +     IP   G +   +PDE                L  ++  HN +  L      +
Sbjct: 245  DMVEMISHIPD--GGNRTAIPDE----------------LQPSSGYHNSYSRL------K 280

Query: 1477 GNFP-TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
             + P  +IT          C HP Q R LT RE AR Q FPDSY+F G +    +QIGNA
Sbjct: 281  SDEPAVAITRNMSKPSSARCIHPFQHRGLTPREGARLQTFPDSYRFEGGLVSTRKQIGNA 340

Query: 1536 VPPTLAFALGRKLKEAV 1552
            VPP LA ALG  LK+AV
Sbjct: 341  VPPYLAEALGYYLKQAV 357


>gi|448485280|ref|ZP_21606564.1| DNA-cytosine methyltransferase [Halorubrum arcis JCM 13916]
 gi|445818256|gb|EMA68116.1| DNA-cytosine methyltransferase [Halorubrum arcis JCM 13916]
          Length = 403

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 184/438 (42%), Gaps = 80/438 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+FAG GGLS GL+++G      A+E ++ A  +F  N                  
Sbjct: 6    LTYVDLFAGAGGLSVGLERAGFELVH-AVEVDDDARASFANNR----------------- 47

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                    + +   E  +    +D   +  +     VD + GGPPCQGFS          
Sbjct: 48   --------EGLEPEELTQDIRKVDNQDVTEVVGRDTVDLVAGGPPCQGFS---EVVSPDG 96

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S  +  + + F+S+ +   P+  L ENVR   +   G+       S  EMGY V + +++
Sbjct: 97   SDDRNHLFVNFISWVNELDPKAALFENVRGMQNTADGKFLDAVEESFGEMGYDVSYRVVK 156

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  FGV Q R R  + A + H T  E+P     F   EL                    P
Sbjct: 157  ASDFGVPQQRHRLLVLA-TKHSTT-EFP-----FDGFELD-------------------P 190

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                 V   IGDLP VG G  KT  EY  +P +  Q  +RG+   LT H +    E  + 
Sbjct: 191  IETPGVIAGIGDLPEVGPGEEKT--EYDAEPTTVIQDDLRGDNTELTHHQAANHTEDMVE 248

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                I    G +  ++PDE                L  ++  HN +     RLD +    
Sbjct: 249  MISHISD--GGNRTEIPDE----------------LQPSSGYHNSYS----RLDSQ-EPA 285

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
             +IT          C HP Q R LT RE AR Q FPD Y+F G +    +QIGNAVPP L
Sbjct: 286  VAITSNMSKPSSARCIHPFQHRGLTPREGARLQTFPDWYRFDGGLVSVRKQIGNAVPPYL 345

Query: 1541 AFALGRKLKEAVESKRST 1558
            A ++G  LK++V S+  T
Sbjct: 346  AESVGYYLKQSVYSQTLT 363


>gi|256397638|ref|YP_003119202.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
 gi|256363864|gb|ACU77361.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
          Length = 389

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 194/444 (43%), Gaps = 74/444 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA- 1179
            L  +D+F G GG S+G +++G     + I+    +   F+LNH  +L L  +   + R+ 
Sbjct: 4    LKVMDLFCGTGGFSKGFEKTGSFEVVYGIDILPLSVATFQLNHEAALALSGDIRKVRRSE 63

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            + EK   A D                          +VD I GGPPCQGFS +     + 
Sbjct: 64   IAEKLNLARD--------------------------EVDVIIGGPPCQGFSSIRPNRSTN 97

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
            +   +  +   F ++  Y++PR F+ ENV    +  +G        S  ++GY   + IL
Sbjct: 98   YDDPRNTLFEEFAAYVGYWRPRVFVFENVVGLATHQRGVDLDAIQESFSQLGYTTDWRIL 157

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF---------AAPELKIMLSDNYQYS 1350
             A  FGV Q R+R  +  A     L  WP P H            A  L+    D +  S
Sbjct: 158  NAAHFGVPQKRERLILLGAQQGVKL-RWPRPTHHGNFRTIGHQDPARLLRPSQPDLFSDS 216

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
            +    A      A+TVRD I DLP +G+G +     Y     + +Q+  RG++A LT H 
Sbjct: 217  SSELPA------ALTVRDAIDDLPPIGSGEAAE--RYDRPARTDYQRERRGDVAELTWHC 268

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
            +   ++    +  +I K  G +   +P  K  +++G                   +   +
Sbjct: 269  ATRHSD----KMMEIIKHSGPNISYIP--KHLITSG-------------------FSSCY 303

Query: 1471 GRLDWEGNFPT-SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK- 1528
             RL+ +   PT ++    P      C HP+ DR LT RE AR Q F D+++F G+ ++  
Sbjct: 304  SRLEADEAAPTITVNFVHPASN--KCIHPNLDRALTPREGARIQSFDDNFRFAGTNRNAV 361

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAV 1552
             +QIGNAVPP L   +G  + E +
Sbjct: 362  AKQIGNAVPPLLGKVIGDAVAEML 385


>gi|169977308|emb|CAQ18901.1| chromomethylase [Nicotiana sylvestris]
          Length = 308

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 154/291 (52%), Gaps = 35/291 (12%)

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDN 1346
            L+ M YQ R G++ AGA+G+ Q R R F+W A   + LP++P P H      ++ ++   
Sbjct: 3    LVGMNYQARMGMMAAGAYGLPQFRMRVFMWGALSSEKLPQYPLPTHKVI---VRGVIPTE 59

Query: 1347 YQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR--- 1400
            ++ + V +   G      + + + D + DLP+V N   +  M Y N+P S FQ  IR   
Sbjct: 60   FESNTV-ALDEGREIDLKKELFLGDALSDLPSVENNEQRDEMPYTNEPTSDFQHFIRLGR 118

Query: 1401 -GNM-AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD---------------EKVKL 1443
             G + +VL DH   ++N+ +  R  +IPKR GA++ DLP                E+VKL
Sbjct: 119  DGALGSVLYDHRPLQLNDDDYQRVCQIPKREGANFRDLPGVRVRSDNKVEWDPDVERVKL 178

Query: 1444 STGQVVDLIP-WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDR 1502
             +G+   L+P + +        +    FGRL W+   PT +T  +P  +     HP Q+R
Sbjct: 179  PSGK--PLVPDYAMSFVGGSSTK---PFGRLWWDETVPTVVTRAEPHNQT--IIHPQQNR 231

Query: 1503 ILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            +LT+RE AR QGFPD Y+  G I+ ++ Q+GNAV   +A ALG  L  A++
Sbjct: 232  VLTIRENARLQGFPDYYKLTGPIKERYIQVGNAVAVPVARALGYSLAMAMK 282


>gi|429190201|ref|YP_007175879.1| DNA-methyltransferase Dcm [Natronobacterium gregoryi SP2]
 gi|429134419|gb|AFZ71430.1| DNA-methyltransferase Dcm [Natronobacterium gregoryi SP2]
          Length = 403

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 182/436 (41%), Gaps = 82/436 (18%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E +L  +D+FAG GGLS GL+++G      A+E +E A   F  N               
Sbjct: 3    ERNLTYVDLFAGAGGLSIGLEKAGFELVH-AVEVDEDARSTFARN--------------- 46

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                       D +S  +       +D + I +L     +D + GGPPCQGFS       
Sbjct: 47   ----------RDGMSPDDITGDIRDVDNHEIIDLVDQRSIDLVAGGPPCQGFS---EVVS 93

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
               S  +  +   F+S+ +  +P+  L ENVR   +   G+       S   +GY V   
Sbjct: 94   PDGSDDRNHLFTNFISWVNELEPKAALFENVRGIQNTAGGKFLEAVEKSFDLIGYDVTHR 153

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            ++ +  FGV Q R+R  +  A+  D         H F   EL                  
Sbjct: 154  VINSSDFGVPQHRRR-LVAIATRKDVR------EHPFDGFELN----------------- 189

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
              P     V D IGDLP VG G  + I EY  +P +  QK +R     L+ HI+   ++ 
Sbjct: 190  --PVETPGVMDGIGDLPEVGPG--EEITEYDTEPRTLLQKDLRNGSDELSHHIAASHSQD 245

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
             +     IP   G +   +PDE                L  ++  HN +  L      + 
Sbjct: 246  MVEMISHIPD--GGNRTAIPDE----------------LQPSSGYHNSYSRL------KS 281

Query: 1478 NFP-TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
            + P  +IT          C HP QDR LT RE AR Q FPD+Y+F G +    +QIGNAV
Sbjct: 282  DEPAVAITSNMSKPSSARCIHPFQDRGLTPREGARLQTFPDTYRFDGGLVSVRQQIGNAV 341

Query: 1537 PPTLAFALGRKLKEAV 1552
            PP L  ALG  L+E+V
Sbjct: 342  PPYLGEALGYYLRESV 357


>gi|395512633|ref|XP_003760540.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Sarcophilus
            harrisii]
          Length = 137

 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 84/109 (77%)

Query: 1447 QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTV 1506
            Q   LIPW LP+T  R+N W GL+GRL+W+G F T++TDP+PMGK G   HP+Q R+++V
Sbjct: 18   QFNTLIPWSLPHTGNRNNHWAGLYGRLEWDGFFSTTVTDPEPMGKQGRVLHPEQHRVVSV 77

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            RECARSQGFPD+Y+F G    KHRQ+GNAVPP LA A+G ++K ++ ++
Sbjct: 78   RECARSQGFPDTYRFFGQTLDKHRQVGNAVPPPLAKAIGLEIKNSILAR 126


>gi|448504090|ref|ZP_21613717.1| DNA-cytosine methyltransferase [Halorubrum coriense DSM 10284]
 gi|445691180|gb|ELZ43372.1| DNA-cytosine methyltransferase [Halorubrum coriense DSM 10284]
          Length = 403

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 181/438 (41%), Gaps = 80/438 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+FAG GGLS GL+++G      A+E ++ A  +F  N                  
Sbjct: 6    LTYVDLFAGAGGLSAGLERAGFELVH-AVEVDDDARASFANNR----------------- 47

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                    + +   E  +    +D   +  +     VD + GGPPCQGFS          
Sbjct: 48   --------EGLEPDELTQDIREVDNQDVTKVVGRDTVDLVAGGPPCQGFS---EVVSPDG 96

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S  +  + + F+S+ +   P+  L ENVR   +   G+       S  EMGY V + ++E
Sbjct: 97   SDDRNHLFVNFISWVNELDPKAALFENVRGMQNTAGGKFLDAVEESFGEMGYDVSYRVVE 156

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  FGV Q R R  + A     T  E+P     F   EL                    P
Sbjct: 157  ASDFGVPQQRHRLLVLATKRSTT--EFP-----FDGFELD-------------------P 190

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                 V   IGDLP V  G  KT  EY  +P +  Q  +RG+   LT H +    E  + 
Sbjct: 191  IETPGVIAGIGDLPEVSPGEEKT--EYDAEPATVIQDDLRGDNTELTHHQAANHTEDMVE 248

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                I    G +  ++PDE                L  ++  HN +     RLD +    
Sbjct: 249  MISHISD--GGNRTEIPDE----------------LQPSSGYHNSYS----RLDSQ-EPA 285

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
             +IT          C HP Q R LT RE AR Q FPD Y+F G +    +QIGNAVPP L
Sbjct: 286  VAITSNMSKPSSARCIHPFQHRGLTPREGARLQTFPDWYRFDGGLVSVRKQIGNAVPPYL 345

Query: 1541 AFALGRKLKEAVESKRST 1558
            A ++G  LK++V S+  T
Sbjct: 346  AESVGYYLKQSVYSQTLT 363


>gi|417847800|ref|ZP_12493761.1| putative modification methylase HaeIII [Streptococcus mitis SK1073]
 gi|339456198|gb|EGP68791.1| putative modification methylase HaeIII [Streptococcus mitis SK1073]
          Length = 351

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 189/431 (43%), Gaps = 101/431 (23%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGLS G + +G +     I+ +E A E F+ NH  S +L              
Sbjct: 7    VDLFSGAGGLSYGFEMAGFN-VLLGIDNDEKALETFQKNHQNSEIL-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQ--VDFINGGPPCQG--FSGMNRFNQST 1239
            CGD  +            S +E++    P+ G+  +D I GGPPCQG   SG  +F+   
Sbjct: 52   CGDIANI-----------SYEEDI---KPIIGEQKIDIIVGGPPCQGMSLSGPRKFDDP- 96

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                + ++ L+++      +P  F++ENV   VS  KGQ     +    +MGY+V+F +L
Sbjct: 97   ----RNKLYLSYIRLVREIKPTAFVIENVIGIVSLFKGQIKDTIIEEFSKMGYKVQFKVL 152

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV Q+RKR  I+  + +D   E+PE +      E+                    
Sbjct: 153  LASDYGVPQNRKRV-IFVGTRNDGF-EYPEALGTIITTEM-------------------- 190

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                      I DLP + N   +  M Y ++P + +QK +R    V+ +H++ + +E  +
Sbjct: 191  ---------AISDLPTLENELGEIEMSYVSEPQNDYQKLMRKRSNVVLNHVAAKHSEKVI 241

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                 +P   G ++ +LP+E  +     V     W       R   WK            
Sbjct: 242  STIALVPD--GGNYKNLPEELRETRKFNVA----WT------RFASWK------------ 277

Query: 1480 PTSITDPQPMGKVG--MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
                  P P    G    FH   +R+ TVRE AR Q FPD + F+GS   + RQ+GNAVP
Sbjct: 278  ------PAPTIDTGHRHHFHYKYNRVPTVRESARLQSFPDDFIFYGSKTQQFRQVGNAVP 331

Query: 1538 PTLAFALGRKL 1548
            P +A  +   L
Sbjct: 332  PLMAQQIANNL 342


>gi|225862882|ref|YP_002748260.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225789623|gb|ACO29840.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 360

 Score =  147 bits (371), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 183/435 (42%), Gaps = 81/435 (18%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F GCGG+SEG + SG       ++  E A E F  N P+S                
Sbjct: 5    VIDLFCGCGGISEGFRLSGFEIV-GGLDINEDAVETFNKNFPDS--------------QA 49

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C D E               ++++     L G +D I GGPPCQGFS  NR+ Q     
Sbjct: 50   YCADIEKI------------KNDDIPFMFDLLGDIDVIVGGPPCQGFSSANRW-QKEIED 96

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + ++   ++ F +  +P+  L+ENVR  ++ + G         L   GY V   +L+A 
Sbjct: 97   PRNKLFYEYIRFVEVLKPKVVLIENVRGILTRDNGYAKNKIYEILQRSGYNVDSAVLDAS 156

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +GV Q R RAF  A     T  + P+        + K++                    
Sbjct: 157  EYGVPQKRLRAFFLA-----TRQDIPQITFEKLVKQPKVL-------------------- 191

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEY--QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               V++ I +L  +   A K    Y  Q+ P S +Q  +R     + +H  K   ++   
Sbjct: 192  ---VKEAIEELYVLEKKAQKGETTYLLQSKPASPYQNYLRNTENKIMNHEIKYPADIQQQ 248

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R   +P+  G +W D+P+E                 PN  +R N+    + RL+ E    
Sbjct: 249  RISHVPQ--GGNWRDIPEE---------------LFPN--QRKNRHSSAYKRLNEEDVSV 289

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T  T           FH    RI TVRE AR Q F DS+ F GS   ++RQ+GNAVPP L
Sbjct: 290  TIDTGNAHSNYFHTIFH----RIPTVREAARLQSFKDSFVFSGSRTGQYRQVGNAVPPLL 345

Query: 1541 AFALGRKLKEAVESK 1555
            A A+   +KE + ++
Sbjct: 346  AKAIADVIKEGITNE 360


>gi|406963796|gb|EKD89769.1| Modification methylase HgiDII [uncultured bacterium]
          Length = 380

 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 192/437 (43%), Gaps = 83/437 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+GCGG + G +Q+G    K A++  + A ++FKLN P++ +  ++ + I    
Sbjct: 5    LKVIDLFSGCGGSALGFKQAGFD-IKVAVDINKLASQSFKLNFPKAKVFSSDISTISSEE 63

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            + K  +A    S +E   +A                       PPCQGFS   R +++  
Sbjct: 64   LLKAANAS---SGNEVVIIAC----------------------PPCQGFSTARRKSEAI- 97

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            +  +  +I  FL      +P  F++ENV    +      F+  L  L E+GY   +G+++
Sbjct: 98   NDPRNTLIYEFLRVVRDIRPFAFVMENVPGLANGIGKPLFQDILKKLKELGYDTVYGVVD 157

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
               +GV Q RKR  +     +D+      P      P+L     D Y            P
Sbjct: 158  TADYGVPQRRKRLVLIGT--NDSKIRLTFPKQTNQDPDL----PDRYL----------TP 201

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            +   TVR+ IGDLP +  G      + + DP+                H +  + E+NL 
Sbjct: 202  WN--TVRNAIGDLPQINAGE-----KSEKDPI----------------HSASNLAEINLK 238

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R    P   G D    P+               + +    K+ + +K ++GR+ W+   P
Sbjct: 239  RMAITPHD-GGDRLSWPE---------------YLVLECHKKVSGYKDIYGRMKWDSPSP 282

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T IT    M   G   HP+QDR +++RE AR Q FPD Y+F G+  H   Q+GNAVPP L
Sbjct: 283  T-ITGGCVMISKGRFGHPEQDRAISLREAARLQTFPDDYKFAGNTGHIAAQLGNAVPPLL 341

Query: 1541 AFALGRKLKEAVESKRS 1557
            A  +G  L  ++   +S
Sbjct: 342  AKRIGETLAASIRESKS 358


>gi|346973695|gb|EGY17147.1| modification methylase AgeI [Verticillium dahliae VdLs.17]
          Length = 1411

 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 155/617 (25%), Positives = 246/617 (39%), Gaps = 110/617 (17%)

Query: 957  GETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDI 1016
            GET  A  +   K    C+L  +  P +P        ++++RR  R   I  +    +  
Sbjct: 651  GETVLALLDPSGKRLEPCEL--VTAPTKP------GVKMELRRLLR--RIEVDPYSQARP 700

Query: 1017 REVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP----AIFQHIFFCEHLHDPSKGSLK 1072
             E+ YS+E + + + A+ G+C VR  +       P     +    +   +L D       
Sbjct: 701  NELVYSDEIYSVLLAAVYGRCLVRYYSPGETVQTPYDRDGVGNAFYISTYLQD------- 753

Query: 1073 QLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQE--NHLATLDIFAGC 1130
                      + G+   E  S  +           +  +QG    E    L   D+F G 
Sbjct: 754  ----------TLGTKTCEPFSHERPFP--------KTFRQGMDPSEGFTKLQGFDLFCGG 795

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++SG    +WA                      N+ N  +RA+     + +D 
Sbjct: 796  GNFGRGLEESGAVEMRWA----------------------NDIN--MRAIHTYMANLDD- 830

Query: 1191 VSTSEAAELAASLDE--------NVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
               S  +  A S+D+           +N+P  G+VDF++GG PC GFS +     +   +
Sbjct: 831  --PSRVSPFAGSIDDLARLALEGRFASNVPAVGEVDFVSGGSPCPGFSRLTVDKTTPNQR 888

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGIL 1299
                ++ AF SF D ++P+Y LLENV   +   K +    F   + +++ MGYQ  F +L
Sbjct: 889  KNQSLVAAFASFIDMYRPKYGLLENVVEIIQGRKTREEDVFCQLICAIVGMGYQTHFFLL 948

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH-VFAAPELKIMLSDNYQYSAVRSTANG 1358
            +A  FG  QSR R F+  A+P   LPE P   H   A     + L  N +   +R T   
Sbjct: 949  DAWTFGSPQSRSRIFLAFAAPGLRLPEVPMQSHRPLAMRSRSLGLLSNGE-PMLRKTFTP 1007

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
              F ++T R  + DLP + +  +   + +                    DH  + +    
Sbjct: 1008 TAFASVTARQALADLPDIADAKADCCIPF-------------------PDH-RQSIGVTQ 1047

Query: 1419 LIRCQK--IPKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            L+R Q   IP RP G +     ++     T   + L P      A+R       FGRL  
Sbjct: 1048 LLRPQLGCIPTRPWGLNLGTAHNKGDGPMTAAELSLYP-----QAQRQGPSSKAFGRLRP 1102

Query: 1476 EGNFPTSITDPQPMGKVG-MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            +    T  T P P    G    H  Q+RILTV E  R+QGF D     G+   + + +GN
Sbjct: 1103 DRLMGTITTKPSPSDGYGRAVLHWAQNRILTVMEARRAQGFRDHEVILGTPAEQWKTVGN 1162

Query: 1535 AVPPTLAFALGRKLKEA 1551
            +V   ++ ALG   + A
Sbjct: 1163 SVAREVSLALGLSFRAA 1179


>gi|342210471|ref|ZP_08703237.1| cytosine specific DNA methyltransferase [Mycoplasma anatis 1340]
 gi|341579492|gb|EGS29506.1| cytosine specific DNA methyltransferase [Mycoplasma anatis 1340]
          Length = 600

 Score =  147 bits (371), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 187/430 (43%), Gaps = 83/430 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG+S GL+Q     +   +++ + A E +K NH +++ +  + ++ L+ V E+
Sbjct: 8    LDLFCGAGGISVGLEQISNFKSVIGLDFNKQALETYKFNHKDAIGI--HGDITLKEVKER 65

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                                    I NL     ++ I GGP CQGFS  N+      +  
Sbjct: 66   ------------------------IINLSKEKGINMIVGGPSCQGFS--NKGKMLGLNDP 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   ++    + +P+ F+LENV+  +S   G      + S  E+GY++ + +L A  
Sbjct: 100  RNYLFKEYVEIVKHVKPKLFILENVKGMISSENGYFINEIVKSFEELGYKISYKVLNAAD 159

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FGV Q+R+R  +  +                        L  ++ +  +       P   
Sbjct: 160  FGVPQNRERTILIGS------------------------LDFHFNFRILDEFKTKTP--- 192

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             TV + I DL  + +G  + I +Y N+PVS++QK +R N   L +H +   ++  L +  
Sbjct: 193  -TVYEAISDLSYLNSGEGEEISDYINEPVSYYQKLMRKNSLKLYNHKATNHSKHALYKLS 251

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP   G ++                      LP       ++K  + RL+W    PT  
Sbjct: 252  LIPPEKGKEF----------------------LPKELLGKQKFKTTWTRLEWNEPSPTID 289

Query: 1484 T--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            T  D    GK     HP  +R +T RE AR Q FPD + F G+      QIGNAVPP LA
Sbjct: 290  TRFDTPSNGKNT---HPILNRAITPREAARLQSFPDDFIFTGTKTSVCTQIGNAVPPLLA 346

Query: 1542 FALGRKLKEA 1551
             A+G  + +A
Sbjct: 347  KAIGLGIIKA 356


>gi|434403782|ref|YP_007146667.1| DNA-methyltransferase Dcm [Cylindrospermum stagnale PCC 7417]
 gi|428258037|gb|AFZ23987.1| DNA-methyltransferase Dcm [Cylindrospermum stagnale PCC 7417]
          Length = 391

 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 117/468 (25%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            EN L ++ +FAG GGL  G++Q+G  +    +E +  A +   +N P             
Sbjct: 3    ENQLISIGLFAGAGGLDLGMEQAGFHTVS-VVEIDADATKTIAVNRPYL----------- 50

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDE---NVIN-NLPL-PGQVDFINGGPPCQGFSGM 1232
                     +E  V     A L  +L E    V+N   PL PG+VD + GGPPCQ FS  
Sbjct: 51   ---------SESAVPRDIRATLPQTLLEEGGRVLNLGRPLKPGEVDLVTGGPPCQPFSTA 101

Query: 1233 NRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN----------------- 1275
             +  + +    +  + + F+   +  QPR+F++ENVR  +S                   
Sbjct: 102  GK--RGSVMDPRGSLFMEFIRIIEGIQPRFFVMENVRGLLSAPIRHRPHDQRGFGFPTLE 159

Query: 1276 ----KGQTFRLTLASLLEMGYQVRFG-ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEP 1330
                 G   ++ L+ +  +GY+V    +LEA  +GV Q+RKR    A+    +L  +P P
Sbjct: 160  PEEMSGSALQVVLSEMKSLGYKVALPKLLEAADYGVPQNRKRVIFIASRESQSL-TFPLP 218

Query: 1331 MHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
             H           S+N          NG P + +T++D + +L                D
Sbjct: 219  TH-----------SEN--------GMNGLP-KWLTIKDALENL---------------ED 243

Query: 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
            P                +++S   N L  +R  K     G +W  LPD           D
Sbjct: 244  PKP--------------EYLSYSENRLKYLRLLKA----GQNWRYLPD-----------D 274

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            L    +    K      G + RL W+   PT  T P       MC HP++ R L++REC 
Sbjct: 275  LKQEAMGGAYKSGGGKVGFYRRLSWDKPSPTITTSPH-QKATDMC-HPEELRPLSIRECL 332

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            + Q FPD++ FHGS   K+RQIGNAVP  LA A+G  + + ++ +  T
Sbjct: 333  QIQTFPDNWVFHGSTASKYRQIGNAVPVLLAKAIGEHIYKLIKKEEVT 380


>gi|422870278|ref|ZP_16916771.1| modification methylase DdeI [Streptococcus sanguinis SK1087]
 gi|328946815|gb|EGG40952.1| modification methylase DdeI [Streptococcus sanguinis SK1087]
          Length = 387

 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 201/459 (43%), Gaps = 97/459 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISS---------TKWAIEYEEPAGEAFKLNHPESLMLIN 1171
            +  +D+F+G GGL+ G Q +  ++          ++A E+   A EAF+ N+P   M+  
Sbjct: 2    IEVVDLFSGAGGLTFGFQNTIKNNKFVSRNDFNIRFANEFNHDAAEAFRQNYPRVTMI-- 59

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFS 1230
                            ED           A++D++ + +  +  + VD + GGPPCQ FS
Sbjct: 60   ---------------EEDI----------ANIDKHFLKSKGISSKRVDLVIGGPPCQSFS 94

Query: 1231 GMNRFNQSTWSKVQCEM--ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT----- 1283
             + +      +K+  E   IL+F+      QP+ F+ ENV   ++    Q   +      
Sbjct: 95   TVGKRQYDKRAKMYREYRRILSFI------QPKMFVFENVYGLLTMKNEQNGPIIRNVKE 148

Query: 1284 ----LASLLEM-GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAP 1337
                L+S  E  GY V   ++ A  FGV Q+R+R F+        +  EW  P       
Sbjct: 149  SFNDLSSFGEASGYDVYTKLINAKDFGVPQNRERVFLIGIRKDLKIKFEWTFPEETTLNN 208

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK 1397
            E+                         T+RD I DLP +GN   K    Y  +P + +Q 
Sbjct: 209  EI-------------------------TLRDAISDLPILGNNEQKN--NYICEPRTEYQA 241

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
             +RGN   L +H+S+   E    R QKI +  G       + + K    ++V+     L 
Sbjct: 242  LLRGNQTELLNHVSRNHGE----RLQKIMRALG-------EGQGKNDINRMVE--DGILD 288

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD 1517
                  + +   +GRL W+    T+IT+         C HP+Q+R LT RE AR Q FPD
Sbjct: 289  KDLYLTSGYNNTYGRLWWDKP-STTITNNLSTPSSLRCIHPEQNRALTAREGARIQSFPD 347

Query: 1518 SYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            +Y+F G +Q  + QIGNAVPP L+  L  ++K+  E  +
Sbjct: 348  NYKFVGGLQAINTQIGNAVPPILSIHLANRIKKFFEENK 386


>gi|297804900|ref|XP_002870334.1| hypothetical protein ARALYDRAFT_915483 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316170|gb|EFH46593.1| hypothetical protein ARALYDRAFT_915483 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 178

 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 76/87 (87%)

Query: 1141 GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200
            G+S TKWAIEYEEPAG+AFK NHP++ + ++NCNVILRA+MEKCGD +DC+ST+EAAELA
Sbjct: 12   GVSDTKWAIEYEEPAGQAFKQNHPDATVFVDNCNVILRAIMEKCGDVDDCISTTEAAELA 71

Query: 1201 ASLDENVINNLPLPGQVDFINGGPPCQ 1227
            A LDEN  + LPLP QVDFINGGPPC 
Sbjct: 72   AKLDENQKSTLPLPCQVDFINGGPPCH 98



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 45/60 (75%)

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            N  PF ++TVRDTIGDLP V NG SK   +Y   PVSWFQK+IRGNM VLTDHI K +N+
Sbjct: 105  NLVPFHSITVRDTIGDLPLVENGESKLNKDYGATPVSWFQKKIRGNMIVLTDHICKGLND 164


>gi|261203805|ref|XP_002629116.1| DNA methyltransferase Dim-2 [Ajellomyces dermatitidis SLH14081]
 gi|239586901|gb|EEQ69544.1| DNA methyltransferase Dim-2 [Ajellomyces dermatitidis SLH14081]
 gi|239608866|gb|EEQ85853.1| DNA methyltransferase Dim-2 [Ajellomyces dermatitidis ER-3]
          Length = 1233

 Score =  146 bits (369), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 230/586 (39%), Gaps = 111/586 (18%)

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR-------KKN 1043
            +S QV VR F R        A C    E+ Y+  T  + V+ I  +C+VR       +  
Sbjct: 546  ESGQVNVRVFLR-RGRDYNDAGCRP-NELVYTNRTRTVHVDQIERRCQVRCYTEEQKRDG 603

Query: 1044 DIPA-CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIE 1102
             IPA  N        +         +GS      H  + +  G   SE +S RK      
Sbjct: 604  SIPAPYNRDGTGDAFYVTVQEISSDRGSELVSIQHPPVGFREGYDYSEDSSLRK------ 657

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
                              L  L+IF+G G    GL++ G    +WA+E+       ++ N
Sbjct: 658  ------------------LRALNIFSGGGSFDRGLEEGGAIKNRWAVEWSAAPMLTYRAN 699

Query: 1163 H--PES--LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVD 1218
            H  PE   L L +  + +L+A+ +K          +EA  L A L           G V+
Sbjct: 700  HENPEKVKLFLGSVNDFLLQALQQK----------AEAGNLIAKL-----------GDVE 738

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKG 1277
             I+ G PCQG+S +N    +  S     MI +  S+ D+++P+Y +LENV    +  +K 
Sbjct: 739  VISAGSPCQGYSNVNNRKNNAVSMQNSSMIASVASYVDFYRPQYAILENVIAMSNRTHKR 798

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP 1337
                  L + + MGYQ R   L+A +FG  QSR R FI  A+P   LP  P   H     
Sbjct: 799  NPLCQLLCTFVGMGYQARVLNLDAWSFGAPQSRSRLFIVIAAPGLQLPAHPPLTHSHPPK 858

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRA----------MTVRDTIGDLPAVGNGASKTIMEY 1387
              +  L +           NG PF            + +  ++ DLP +  G +      
Sbjct: 859  TTQKSLGE---------APNGLPFGKRHWEIPVFDFLPISQSLKDLPRIRTGIT------ 903

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
               P+ +   R     + +  HI              +PK P                 +
Sbjct: 904  ---PIDYPDHRPTRFESAVNQHI-----------INSVPKAPRIQ-----------GLHE 938

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTV 1506
             V    +C  +   R    +  F R+      PT  T P P  +  G   H ++DR++TV
Sbjct: 939  AVARGFFCPEHRNARQRNCQRAFSRIHPRFLMPTVTTFPSPYCRFTGRWLHWEEDRVMTV 998

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             E  R+QGFPD     GS   + + +GN+V   +A ALG  +++AV
Sbjct: 999  MEARRAQGFPDDEVLVGSPVQQWKTVGNSVARQVALALGLVMRDAV 1044


>gi|392595567|gb|EIW84890.1| S-adenosyl-L-methionine-dependent methyltransferase [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1176

 Score =  146 bits (369), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 145/326 (44%), Gaps = 60/326 (18%)

Query: 1099 KCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEA 1158
            +C +G  E    K     Q   L  L++F G GGL  GL+ SG   TKWA +    + + 
Sbjct: 651  ECHDGHLEELRCKADCLKQSGCLQGLELFCGAGGLGTGLEMSGFVETKWAADISPSSAKT 710

Query: 1159 FKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDEN-VINNLPLPGQV 1217
            FK NHP++ +     +++L   M         V+  ++     SL  N  + ++P PG V
Sbjct: 711  FKSNHPDATVYNQCTSLLLEHAM--------AVADGDSPRPLKSLGTNETLPSMPQPGDV 762

Query: 1218 DFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN-- 1275
            +FI GGPPCQ FS MN   +S    ++  ++   LS+ ++++PR+FLLENV   +     
Sbjct: 763  NFIYGGPPCQPFSRMNSHKKS--DDIRATLVANMLSYVEFYRPRFFLLENVLGMLGHKLE 820

Query: 1276 -----------KGQ------------------TFRLTLASLLEMGYQVRFGILEAGAFGV 1306
                       KG+                    +     LL +GYQ++F IL AG +G 
Sbjct: 821  DQIGREQDNQLKGRLPKERSSDEQEDQSIKFGVVKFITRCLLALGYQIQFKILNAGQYGA 880

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD---------NYQ--------- 1348
             QSR+R   W A   + +P +P P H    P  K +L           ++Q         
Sbjct: 881  PQSRRRIIFWGAKNGELMPAFPLPTHSLQNPLQKSLLPTGSWSLPVTWDHQGLWLLQDSV 940

Query: 1349 YSAVRSTANGAPFRAMTVRDTIGDLP 1374
            Y  V    + AP   +T+ D IGDLP
Sbjct: 941  YEEVTGLHSCAPLDMVTIEDAIGDLP 966



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 1472 RLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQ-------FHG 1523
            RL     F T +T     G+  G   HP Q R L++RE AR+QGFPD Y+       F+ 
Sbjct: 1071 RLRANSLFKTIMTSMPLNGRHAGSSIHPTQKRGLSIREVARAQGFPDHYKLESFNRDFNK 1130

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
               ++ RQIGNAVP  L+ ALGR L E +
Sbjct: 1131 LAVNQLRQIGNAVPIPLSHALGRSLGETL 1159


>gi|327356173|gb|EGE85030.1| cytosine-specific methyltransferase [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1233

 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 230/586 (39%), Gaps = 111/586 (18%)

Query: 991  KSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVR-------KKN 1043
            +S QV VR F R        A C    E+ Y+  T  + V+ I  +C+VR       +  
Sbjct: 546  ESGQVNVRVFLR-RGRDYNDAGCRP-NELVYTNRTRTVHVDQIERRCQVRCYTEEQKRDG 603

Query: 1044 DIPA-CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIE 1102
             IPA  N        +         +GS      H  + +  G   SE +S RK      
Sbjct: 604  SIPAPYNRDGTGDAFYVTVQEISSDRGSELVSIQHPPVGFREGYDYSEDSSLRK------ 657

Query: 1103 GEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162
                              L  L+IF+G G    GL++ G    +WA+E+       ++ N
Sbjct: 658  ------------------LRALNIFSGGGSFDRGLEEGGAIKNRWAVEWSAAPMLTYRAN 699

Query: 1163 H--PES--LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVD 1218
            H  PE   L L +  + +L+A+ +K          +EA  L A L           G V+
Sbjct: 700  HENPEKVKLFLGSVNDFLLQALQQK----------AEAGNLIAKL-----------GDVE 738

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKG 1277
             I+ G PCQG+S +N    +  S     MI +  S+ D+++P+Y +LENV    +  +K 
Sbjct: 739  VISAGSPCQGYSNVNNRKNNAVSMQNSSMIASVASYVDFYRPQYAILENVIAMSNRTHKR 798

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP 1337
                  L + + MGYQ R   L+A +FG  QSR R FI  A+P   LP  P   H     
Sbjct: 799  NPLCQLLCTFVGMGYQARVLNLDAWSFGAPQSRSRLFIVIAAPGLQLPAHPPLTHSHPPK 858

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRA----------MTVRDTIGDLPAVGNGASKTIMEY 1387
              +  L +           NG PF            + +  ++ DLP +  G +      
Sbjct: 859  TTQKSLGE---------APNGLPFGKRHWEIPVFDFLPISQSLKDLPRIRTGIT------ 903

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
               P+ +   R     + +  HI              +PK P                 +
Sbjct: 904  ---PIDYPDHRPTRFESAVNQHI-----------INSVPKAPRIQ-----------GLHE 938

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTV 1506
             V    +C  +   R    +  F R+      PT  T P P  +  G   H ++DR++TV
Sbjct: 939  AVARGFFCPEHRNARQRNCQRAFSRIHPRFLMPTVTTFPSPYCRFTGRWLHWEEDRVMTV 998

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             E  R+QGFPD     GS   + + +GN+V   +A ALG  +++AV
Sbjct: 999  MEARRAQGFPDDEVLVGSPVQQWKTVGNSVARQVALALGLVMRDAV 1044


>gi|423486158|ref|ZP_17462840.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus BtB2-4]
 gi|423491882|ref|ZP_17468526.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus CER057]
 gi|423501326|ref|ZP_17477943.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus CER074]
 gi|401153950|gb|EJQ61371.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus CER074]
 gi|401158020|gb|EJQ65415.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus CER057]
 gi|402439994|gb|EJV71991.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus BtB2-4]
          Length = 357

 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 182/431 (42%), Gaps = 85/431 (19%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              +D+F GCGGLS G   +G       I+  EPA ++FK NH  ++ +            
Sbjct: 7    TVIDMFCGCGGLSRGFMDAGYD-VLLGIDNNEPALKSFKENHNGAIAM------------ 53

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                   D    S   E+A   D   I         D I GGPPCQGFS   + N++   
Sbjct: 54   -----NGDLFQGSTILEMAHLTDNKSI---------DLIIGGPPCQGFSLTGKRNENDER 99

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
                E ++  ++F   FQP+ F+LENV    +  +G+     +     +GY + + +L A
Sbjct: 100  NTLFEAMVNAVAF---FQPKAFVLENVPGLATLYQGKAKEAIMKEFETLGYTITYKVLYA 156

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +G+ Q RKR F    S      E+PEP           ++ +NY              
Sbjct: 157  PDYGIPQIRKRLFFVGLSNGMEF-EFPEPA----------LIPENY-------------- 191

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
              +T  D IGDL    +     I EY N P + +QK++R     L +H+  +     +  
Sbjct: 192  --VTCEDAIGDLHDFEHDLGTDISEYLNLPKTVYQKKMRKYAKNLYNHVGTKHTPEVINV 249

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
              ++P+  G +  DLP        G+           + K +  W        +    P+
Sbjct: 250  ISQVPE--GGNHKDLPP-----GVGE-----------SRKFNEAWT------RYHSKKPS 285

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
               D          FH   +R+ TVRE AR Q FPD ++F G+   +++Q+GNAVPP L 
Sbjct: 286  KTIDTGHRNH----FHYKYNRVPTVRENARLQSFPDDFKFLGNKTEQYKQVGNAVPPLLG 341

Query: 1542 FALGRKLKEAV 1552
            + LG +LK+ +
Sbjct: 342  YHLGTQLKKYL 352


>gi|226223282|ref|YP_002757389.1| type II DNA modification enzyme (methyltransferase) [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
 gi|406703438|ref|YP_006753792.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L312]
 gi|225875744|emb|CAS04447.1| Putative type II DNA modification enzyme (methyltransferase)
            [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|406360468|emb|CBY66741.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L312]
          Length = 389

 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 204/466 (43%), Gaps = 116/466 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISST---------KWAIEYEEPAGEAFKLNHPESLMLIN 1171
            +  +D+F+G GGL+ G Q   I++T          +A E ++ A EAF LN P+  ML  
Sbjct: 2    IRVVDLFSGAGGLTLGFQNRIINNTFLPMSDYNILFANEVDKHASEAFSLNFPQIPML-- 59

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP-GQVDFINGGPPCQGFS 1230
            NC++                           L E+ ++N  +    +D + GGPPCQ FS
Sbjct: 60   NCSI-------------------------TELTEDYLDNHEIEYSNIDLVIGGPPCQSFS 94

Query: 1231 GMNR--FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ------TFRL 1282
             + R  +++      +   +L+FL      QP+ FL ENV   ++    +        R 
Sbjct: 95   TVGRRQYDEKATMYKEYRRMLSFL------QPKVFLFENVTGLLTMKNDEGEPVLEDIRK 148

Query: 1283 TLASL----LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP---EWPEPMHVFA 1335
                     +++ Y++R  +L A  FGV Q+R+R F+        +    E+PE      
Sbjct: 149  EFGDFSDFEIDLTYEIRETVLNAKHFGVPQNRERVFLLGIRKDLEIKQNWEFPE------ 202

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                +++  D++                +T+ D IGDLPA+ NG  K    Y  DP + +
Sbjct: 203  ----RLLFEDDF----------------LTLEDAIGDLPALRNGERKD--AYDGDPYTPY 240

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQK--IPKRPGADWHDLP-----DEKVKLSTGQV 1448
            Q  +R N  +L DH +  +N   ++R  +  IP       ++L      D K  L++G  
Sbjct: 241  QNLMRNNSTILMDHFNG-LNGEKMLRIMETVIPGEGKKYINELVESGQLDSKYYLTSG-- 297

Query: 1449 VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS-ITDPQPMGKVGMCFHPDQDRILTVR 1507
                             +   + +L W+   P+S IT+         C HP Q+R LT R
Sbjct: 298  -----------------YNNTYSKLWWDR--PSSTITNNLSTPSSFRCIHPIQNRALTPR 338

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            E AR Q FPD++QF GS +  + QIGNAVPP LA  + +++    E
Sbjct: 339  EGARIQSFPDTFQFVGSKEKINSQIGNAVPPLLAIVIAQEIYNFFE 384


>gi|422855124|ref|ZP_16901782.1| modification methylase DdeI [Streptococcus sanguinis SK1]
 gi|327463101|gb|EGF09422.1| modification methylase DdeI [Streptococcus sanguinis SK1]
          Length = 351

 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 189/436 (43%), Gaps = 101/436 (23%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N    +D+F+G GGLS G + +G +     I+ +E A E F+ NH  S +L         
Sbjct: 2    NKYNIIDLFSGAGGLSYGFEAAGFN-VLLGIDNDEKALETFRKNHKNSKVL--------- 51

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ--VDFINGGPPCQG--FSGMNR 1234
                 CGD  +            S +E++    P+ G+  VD I GGPPCQG   SG  +
Sbjct: 52   -----CGDITNI-----------SYEEDI---KPIIGEQKVDLIVGGPPCQGMSLSGPRK 92

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
            F+       + ++ L+++      QP  F++ENV   VS  KG      +    +MGY+V
Sbjct: 93   FDDP-----RNKLYLSYIRLVREIQPTAFVIENVIGIVSLFKGHIKDAIIEEFSKMGYKV 147

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
            +F +L A  +GV Q+RKR  I+  + +D   E+P  +                       
Sbjct: 148  QFKVLLASDYGVPQNRKRV-IFVGTKNDGF-EYPTSLGT--------------------- 184

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                     +T    + DLP + N      M Y ++P + +QK +R   +V+ +HI+ + 
Sbjct: 185  --------TITTEMALSDLPTLENELGDAEMVYVSEPKNNYQKLMRKQSSVVLNHIAAKH 236

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
            +E        +P   G ++ +LP+E   L   +  + + W       R   WK       
Sbjct: 237  SEKVTSTIALVPD--GGNYKNLPEE---LRESRKFN-VAWT------RFASWK------- 277

Query: 1475 WEGNFPTSITDPQPMGKVG--MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
                       P P    G    FH   +R+ TVRE AR Q FPD + F+GS   + RQ+
Sbjct: 278  -----------PAPTIDTGHRHHFHYKYNRVPTVRESARLQSFPDDFIFYGSKTQQFRQV 326

Query: 1533 GNAVPPTLAFALGRKL 1548
            GNAVPP +A  +   L
Sbjct: 327  GNAVPPLMAQQIANSL 342


>gi|289167263|ref|YP_003445530.1| type II DNA modification enzyme (methyltransferase cytosine-specific)
            [Streptococcus mitis B6]
 gi|288906828|emb|CBJ21662.1| type II DNA modification enzyme (methyltransferase cytosine-specific)
            [Streptococcus mitis B6]
          Length = 387

 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 203/457 (44%), Gaps = 99/457 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQS---------GISSTKWAIEYEEPAGEAFKLNHPESLMLIN 1171
            +  +D+F+G GGL+ G Q +            + ++A E+   A EAF+ N+P   M+  
Sbjct: 2    IEVVDLFSGAGGLTFGFQNTIKNNKFVSRNDFNIRFANEFNHDAAEAFRQNYPGVTMI-- 59

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFS 1230
                                      E  A++DE+ + +  +  + VD + GGPPCQ FS
Sbjct: 60   -------------------------EEDIANIDEHFLKSKGISSKRVDLVIGGPPCQSFS 94

Query: 1231 GMNRFNQSTWSKVQCEM--ILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLA 1285
             + +      +K+  E   IL+F+      QP+ F+ ENV   ++      G   R    
Sbjct: 95   TVGKRQYDKRAKMYREYRRILSFI------QPKMFVFENVYGLLTMKNEQNGPIIRNVKE 148

Query: 1286 SLLEM-------GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
            S  ++       GY V   +L A  +GV Q+R+R F+                       
Sbjct: 149  SFKDLSSFGNVHGYNVYTELLNAKDYGVPQNRERVFLIG--------------------- 187

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
            ++  L+  +++S      +  PF    +RD IGDLP++GN       +Y  DP + +Q  
Sbjct: 188  VRNDLNIEFEWSFPEKCTSENPF---NLRDAIGDLPSLGNNDRAD--QYVEDPQTDYQIL 242

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKI--PKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
            +RGN   L +H+S+   +    R QKI    + G   +D+     ++    ++D + +  
Sbjct: 243  MRGNQDQLFNHVSRNHGQ----RLQKIMAALKEGQGKNDIN----RMVEDGLLDRVLYLT 294

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
                     +   +GRL W+    T+IT+         C HP Q+R LT RE AR Q FP
Sbjct: 295  SG-------YSNTYGRLWWDRP-STTITNNLSTPSSLRCIHPSQNRALTAREGARIQSFP 346

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            D+Y+F G +Q  + QIGNAVPP L+  L  ++K+  E
Sbjct: 347  DNYKFVGGLQAINTQIGNAVPPILSIHLANRIKDFFE 383


>gi|325679553|ref|ZP_08159133.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324108840|gb|EGC03076.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 708

 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 189/437 (43%), Gaps = 81/437 (18%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            ++      LD+F+G GG S G++++    T  A+++ E A + FK N P++ ++      
Sbjct: 344  TETTDFIVLDLFSGAGGFSYGIEKNEHFRTAIALDFNEQALQTFKHNMPDTEIV------ 397

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                     GD  D           +++ E +I+ L    +V+ + GGPPCQGFS   + 
Sbjct: 398  --------HGDITD-----------SAVKERIIS-LSKEKKVNMVIGGPPCQGFSLKGK- 436

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
             +   +  +  + L +L+      P+ F++ENV+  +S + G      +  + EMGY VR
Sbjct: 437  -KLGLNDPRNFLFLEYLNIVSEINPQVFIIENVKALLSTSAGWFKDQIVQRVEEMGYTVR 495

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            +G+L +  +GV Q R+RA    +   D   E P+P                        T
Sbjct: 496  YGVLNSADYGVPQLRQRAIFICSK--DIPIELPKP------------------------T 529

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
            A     +  TVRD I DL  + +G      +Y   P S +Q ++R     L +H +    
Sbjct: 530  AK----KVTTVRDAIFDLAYLNSGEGAFEQDYTTQPSSDYQTKMRKGAKKLYNHKASNHA 585

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            E+ + +   IP   G ++                      LP       Q+ G +GRL W
Sbjct: 586  EIAIKKLSLIPPECGKEY----------------------LPEDMIGKQQFSGTWGRLKW 623

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT I         G   HP  +R +T RE AR Q F D + F G   +  +QIGNA
Sbjct: 624  DEPSPT-IDTRFDASSNGTNNHPFLNRAITPREAARLQSFDDKFVFIGPKLYIRQQIGNA 682

Query: 1536 VPPTLAFALGRKLKEAV 1552
            VPP +A AL  K+ + +
Sbjct: 683  VPPLMAKALADKIYDVI 699


>gi|297739614|emb|CBI29796.3| unnamed protein product [Vitis vinifera]
          Length = 74

 Score =  145 bits (366), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/70 (88%), Positives = 66/70 (94%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            GQVDFINGGPPCQGFSGMN FNQ+ WSKVQCEMILAFLSFADYFQPR+FLLE+VRNF+SF
Sbjct: 3    GQVDFINGGPPCQGFSGMNPFNQTNWSKVQCEMILAFLSFADYFQPRFFLLEHVRNFMSF 62

Query: 1275 NKGQTFRLTL 1284
            NKGQ FR TL
Sbjct: 63   NKGQAFRQTL 72


>gi|385221554|ref|YP_005770687.1| cytosine specific DNA methyltransferase [Helicobacter pylori
            SouthAfrica7]
 gi|317010333|gb|ADU84080.1| cytosine specific DNA methyltransferase [Helicobacter pylori
            SouthAfrica7]
          Length = 361

 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++    S    ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFSALIGLDCDKQALNTFENNHKNAVGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAGIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV QSR+RAFI  A+      +  EP                               ++
Sbjct: 158  YGVPQSRERAFIVGATHFSFDFDLLEPS------------------------------QS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            ++V++ I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VSVQEAISDLAYLHSNEGAFESDYLNPIQSNYQALMRKNSPKLYNHQATNHSQSALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL W    PT I
Sbjct: 248  LIDKEQGKE----------------------CLPKNLHGKQQFKSTWGRLSWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRFITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|421711053|ref|ZP_16150397.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R030b]
 gi|407213258|gb|EKE83116.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R030b]
          Length = 355

 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 183/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++    S    ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLERLKEFSALIGLDCDKQALNTFENNHKNAVGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L             ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIELAKKLG------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            ++V++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VSVQEAISDLAYLCSNEGAFESDYLNPIQSNYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+KG +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKGTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420490054|ref|ZP_14988640.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-13]
 gi|420523894|ref|ZP_15022304.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-13b]
 gi|393109397|gb|EJC09928.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-13]
 gi|393133053|gb|EJC33470.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-13b]
          Length = 361

 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 179/425 (42%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++     T   ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLERLKEFDTLIGLDCDKQALITFENNHKNAISV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|358394495|gb|EHK43888.1| hypothetical protein TRIATDRAFT_36027 [Trichoderma atroviride IMI
            206040]
          Length = 1253

 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 187/451 (41%), Gaps = 59/451 (13%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLINNCNVILR 1178
            L  +D+F G G    GL+  G    KWA +Y+  A   +  N  +P+ L           
Sbjct: 734  LRGIDLFCGGGNFGRGLEDGGAIQMKWANDYDSKAIHTYMANVKNPQDLDPF-------- 785

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                  G  +D    S   + A         N+P  G VDFI+GG PC GFS +     +
Sbjct: 786  -----LGSIDDLQRLSMQGDFA--------KNVPQIGDVDFISGGSPCPGFSALTNDKTT 832

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVR 1295
               +    ++ AF SF D ++P+Y +LENV   V+    +    F   + +L+ +GYQ  
Sbjct: 833  AAQRKNQSLVAAFASFVDLYRPKYGVLENVPGIVNKKTARDQDVFSQLICALVGLGYQTH 892

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP--ELKIMLSDNYQYSAVR 1353
            F  L+A + G  Q R R F+  A+P   LP+ P   H   A   EL I    N Q  A R
Sbjct: 893  FFFLDASSCGSPQRRPRIFVVFAAPGLELPKKPPHTHSHPANTRELGIGYLPNGQSMAAR 952

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
                  PF+ +T  + + DLPA+ +      + Y +       +  RG+           
Sbjct: 953  EMPTATPFKYVTAEEAVSDLPAIHDAQPDICVPYPD------HRPTRGH----------- 995

Query: 1414 MNELNLIRCQKIPKRP-GAD----WHDLPDEKVKLSTGQVVD-----LIPWCLPNTAKRH 1463
              +    R   IP +P G D    W+     K +   G +             P++ +  
Sbjct: 996  -TKTQRARISAIPTQPWGMDFATAWYGQDRSKGQAGAGAMTAAERDMFYKASSPSSKEPM 1054

Query: 1464 NQWKG--LFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
            N       +GR+     F T +T   P   K G   H  ++R++TV E  R+QGF D   
Sbjct: 1055 NTLPASKAYGRMFPNKLFETIVTATTPTDAKNGRVLHWRENRLITVMEARRAQGFRDEEV 1114

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
              G    +++ +GN+V   +A ALG   ++A
Sbjct: 1115 LLGDPGTQYKIVGNSVARQVAVALGITFRDA 1145


>gi|225560828|gb|EEH09109.1| DNA methyltransferase Dim-2 [Ajellomyces capsulatus G186AR]
          Length = 1236

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 195/458 (42%), Gaps = 83/458 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILR 1178
            L  L+IF+G G    GLQ+ G    KWA+E+       ++ NH  PE + L         
Sbjct: 660  LRALNIFSGGGSFDRGLQEGGAIENKWAVEWSHVPMLTYRANHDNPEKIHLF-------- 711

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                  G   D +  +   E  AS   N++  L   G V FI+ G PCQG+S +N   +S
Sbjct: 712  -----LGSVNDFLLQALQGEAKAS---NLVAKL---GDVGFISAGSPCQGYSSVNGRKES 760

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL----EMGYQV 1294
              S     MI +  S+ D+++P+Y +LENV   ++ +     R  L  LL     MGYQV
Sbjct: 761  AVSMQNSSMIASVASYVDFYRPQYAILENV---IAMSNRTHERSPLCQLLCTFVGMGYQV 817

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
            R   L+A +FG  QSR R FI  A+P   LP  P   H       +  L +         
Sbjct: 818  RILNLDAWSFGAPQSRSRLFIVIAAPGLQLPAHPPLTHSHPPKTTQKSLGE--------- 868

Query: 1355 TANGAPFRA----------MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA 1404
              NG PF            + + +++ DLP +G      I    + PV +          
Sbjct: 869  APNGLPFGKRHWEVPVFDFLPISESVKDLPKIGRARITPISHPDHRPVRF---------- 918

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
                   + ++  +LI    IPK P      L D   +       D       N  +R+ 
Sbjct: 919  -------ESISNQHLI--NSIPKAPRL--QGLRDAVARGFFSPEED-------NARQRNC 960

Query: 1465 Q--WKGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
            Q  W  +   L      PT  T P P  K  G   H ++DR+++V E  R+QGFPD+   
Sbjct: 961  QRAWSRVHPHL----LMPTVTTFPSPFCKFTGRWLHWEEDRVMSVMEARRAQGFPDNEVL 1016

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAV-ESKRST 1558
             GS   + + +GN+V   +A ALG  ++ AV E+ R T
Sbjct: 1017 VGSPAQQWKVVGNSVARQVALALGLVVRNAVLENIRKT 1054


>gi|209546991|ref|YP_002278909.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv. trifolii
            WSM2304]
 gi|209538235|gb|ACI58169.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv. trifolii
            WSM2304]
          Length = 355

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 152/334 (45%), Gaps = 74/334 (22%)

Query: 1222 GGPPCQGFSGMNRF-----NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276
            GGPPCQGFS  N+      N   W      +   FL   +  +P + + ENV   +  + 
Sbjct: 71   GGPPCQGFSTSNQRTRHADNPKNW------LFREFLRMVETLKPEWVVFENVAGILQTDG 124

Query: 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
            G+        L  MGY++ FGIL A  FG  Q R R  + AA   D  PE P+     A 
Sbjct: 125  GRFAEAFREQLKAMGYRIAFGILNAADFGCPQRRSRYIVIAALNSD--PELPK-----AV 177

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
            P +++                       T+   IGDLP + NGA+   +EY   P+S + 
Sbjct: 178  PNVEVP----------------------TLWQAIGDLPELLNGATVDELEYGGAPLSEYA 215

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
            +R+R ++A  T H+     +  + R   IP+  G +W D+P        G + D      
Sbjct: 216  RRMRSDLAKCTGHLVSRNADSIVARYAHIPQ--GGNWRDVP--------GMMRD------ 259

Query: 1457 PNTAKRHNQWKGLFGRLDWE------GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECA 1510
            P T +R     G++ RL  +      GNF           +  M  HP QDR L+VRE A
Sbjct: 260  PVTDRRRYH-SGIYKRLVQDAPSVVIGNF-----------RKNMLIHPTQDRGLSVREAA 307

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
            R Q F D+Y FHGSI  + +Q+GNAVPP LA A+
Sbjct: 308  RLQSFSDNYVFHGSIGFQQQQVGNAVPPILAKAV 341


>gi|332706962|ref|ZP_08427022.1| DNA-methyltransferase [Moorea producens 3L]
 gi|332354227|gb|EGJ33707.1| DNA-methyltransferase [Moorea producens 3L]
          Length = 450

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 191/436 (43%), Gaps = 76/436 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            + +F G GG S G +Q+G S   +A + +  A E +++N  ESL                
Sbjct: 31   ISLFCGAGGCSLGFKQAGYSIV-YANDKDAAAVETYRINFTESL---------------- 73

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS-GMNRFNQSTWSK 1242
            C + ED     +  +    L E V+     PG++D + GGPPCQGFS   +RF    W  
Sbjct: 74   CSN-EDI----DNLDFGQVLSEIVMK----PGELDILIGGPPCQGFSTAGSRF----WDD 120

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  ++  ++       P++F++ENV   ++ NKG+       + +E+GY +R   + + 
Sbjct: 121  PRNNLLKQYVKALTILNPKWFIMENVEGLLTSNKGKYVYEAAKAFIELGYWIRIEKIYSQ 180

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +G+ Q RKR  I                           L  +++  A +   +G  FR
Sbjct: 181  EYGIPQRRKRVLIIGNR-----------------------LGHDFRIPAPKFQVSGQLFR 217

Query: 1363 A--MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               +T+   I  LP         +    + P   F   +RGN   ++DH    +N + L 
Sbjct: 218  NSDITISHAINSLPPATKDKGTLLTPLTSPPQDDFDSFLRGNATQISDHYYPSINGIQLQ 277

Query: 1421 RCQKIPKRPGADWHDLPDEKV-----KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            R   +  +PG    DLP+E       K +  +V D +P     T KR     GL  RL  
Sbjct: 278  RITAL--KPGQTMKDLPEELQHESFKKRANRRVADGMP-----TEKRGGAPSGL-KRL-- 327

Query: 1476 EGNFPT-SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
             GN P+ +IT            HP ++R LT+RE AR Q FPD + F G+   K +QIGN
Sbjct: 328  MGNEPSLTITG----AATRELIHPVENRPLTIREAARIQTFPDDFVFCGNASQKIQQIGN 383

Query: 1535 AVPPTLAFALGRKLKE 1550
            A+PP LA      +++
Sbjct: 384  AIPPILARVFAEHIRD 399


>gi|367047877|ref|XP_003654318.1| hypothetical protein THITE_2155132 [Thielavia terrestris NRRL 8126]
 gi|347001581|gb|AEO67982.1| hypothetical protein THITE_2155132 [Thielavia terrestris NRRL 8126]
          Length = 2062

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 198/464 (42%), Gaps = 55/464 (11%)

Query: 1099 KCIEGEDELEVEKQGGASQENH----LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEP 1154
            +C+  E E     + G          L  +D+F G G    GL++ G    +WA +  + 
Sbjct: 1414 RCVPFEGEFPTSLRQGFDPTRQTFRKLRGMDLFCGSGNFGRGLEEGGAVEMRWANDIWDT 1473

Query: 1155 AGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
            A   +  N P      ++ +  L       G  +D         L  +L+    +N+P P
Sbjct: 1474 AIHTYMANTPNP----SSTHPFL-------GSVDDL--------LRLALEGKYADNVPRP 1514

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G+VDFI+ G PC GFS +              ++ +F SF D+++P+Y +LENV   V  
Sbjct: 1515 GEVDFISAGSPCPGFSLLTPDKTKLVQIKNQSLVASFASFVDFYRPKYGILENVITIVQA 1574

Query: 1275 NKGQT---FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPM 1331
               ++         +++ +GYQ +  + +A ++G  Q R R F + A+P   LPE P P 
Sbjct: 1575 RHNRSEDVLSQLFCAIVGLGYQAQLILGDAWSYGAPQGRSRVFFYFAAPGLRLPESPTPS 1634

Query: 1332 HV-FAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
            H  F   + + +         V  +    PF+ ++  + + DLP +G+G ++  +   + 
Sbjct: 1635 HSHFPGVKARGLGEMCNGEPFVSRSFAPTPFKYVSAAEGMADLPYIGDGKAEPAIAVPDH 1694

Query: 1391 PV-SWFQKRIRGNMAVLTDHISKEMNELNLIR-CQKIPKRPGADWHDLPDEKVKLSTGQV 1448
             V +     +R  +A +  H     + +N ++ C      PG        ++     G  
Sbjct: 1695 RVCTGITPALRAQIAAIPTHP----HGMNFVKTCNAGVMTPG--------DRALFPAGGF 1742

Query: 1449 VDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVR 1507
                       ++R + W    GR+       T  T  QP   + G   H  +DR LTV+
Sbjct: 1743 ---------RVSQRSHGW----GRVKPSDVLSTVTTRSQPTDARAGTGLHWHEDRPLTVQ 1789

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            E  R+QGFPD     G +  + + +GN+V   +A ALG K +EA
Sbjct: 1790 EVRRAQGFPDHEVLLGRVADQWKLVGNSVARQMALALGLKFREA 1833


>gi|374572064|ref|ZP_09645160.1| DNA-methyltransferase Dcm [Bradyrhizobium sp. WSM471]
 gi|374420385|gb|EHQ99917.1| DNA-methyltransferase Dcm [Bradyrhizobium sp. WSM471]
          Length = 338

 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 180/432 (41%), Gaps = 107/432 (24%)

Query: 1133 LSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVS 1192
            +S G + +G+   K A+E +  A   F  NHP + +L  +   +    + K         
Sbjct: 1    MSLGAKCAGVD-VKVAVEMKPSACLTFAKNHPTTKLLAQDIREVTSFDLPK--------- 50

Query: 1193 TSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN-----RFNQSTWSKVQCEM 1247
                             +LPL      + GGPPCQGFS  N     R N S W      +
Sbjct: 51   ----------------RDLPL-----VVFGGPPCQGFSTSNQRTRTRANPSNW------L 83

Query: 1248 ILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
             L FL   D   P + + ENV   V    G       + L   GY+V   +L A  FG+ 
Sbjct: 84   FLEFLRVVDLLGPEWLVFENVAGIVHTEGGYFLGRLESQLKSRGYRVSSALLNAADFGIP 143

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVR 1367
            Q R R F+   S   + P    P                           G P  A TVR
Sbjct: 144  QRRTRFFL-IGSREQSPPSLSPP---------------------------GDPV-ATTVR 174

Query: 1368 DTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH-ISKEMNELNLIRCQKIP 1426
            D I DLP + NG+SK +  Y+   VS +   +RGN    + H +S+  +E+ + R   IP
Sbjct: 175  DAIWDLPVLRNGSSKDVRPYRTQAVSAYSLALRGNRQTCSGHLVSRNADEI-VARYPHIP 233

Query: 1427 KRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE------GNFP 1480
            +  G +W D+PD+ +    G   D         ++ H    G++ RL         GNF 
Sbjct: 234  Q--GGNWKDIPDDLM----GSYFD--------KSRCHT---GIYRRLSASEPSVVLGNF- 275

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
                      +  M  HP Q R L+VRE AR Q FPD+YQF GSI  + +Q+GNAVPP L
Sbjct: 276  ----------RKNMLIHPTQSRGLSVREAARIQSFPDNYQFCGSIGLQQQQVGNAVPPML 325

Query: 1541 AFALGRKLKEAV 1552
            A A+   +  ++
Sbjct: 326  AQAVFAAISNSI 337


>gi|167042310|gb|ABZ07039.1| putative C-5 cytosine-specific DNA methylase [uncultured marine
            crenarchaeote HF4000_ANIW97J3]
          Length = 380

 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 206/447 (46%), Gaps = 90/447 (20%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKW----AIEYEEPAGEAFKLNHPESLMLINN 1172
            +E H+  LD+F+G GGLSEG   + I +  +    A + +  A   ++ NHP    ++ +
Sbjct: 3    KEAHV--LDLFSGPGGLSEGFNTAKIGNHTFRSVVANDNDVHASVTYRKNHPGVEFVLGD 60

Query: 1173 CNV------ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPC 1226
             +       I+RA+      AE  ++T                       VD I GGPPC
Sbjct: 61   ISASEIKRKIVRAI-----KAETGMNT-----------------------VDVIIGGPPC 92

Query: 1227 QGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            +GFS  N+  ++  + +   +++ +++     +P+ F++ENV    +   G+  +  ++ 
Sbjct: 93   KGFSLTNKMTRNMKNPMN-RLVMDYVAMIRKLKPKAFVMENVPGIFAMEGGKIVKDLISE 151

Query: 1287 LLEMG-YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD 1345
               MG Y     +L A  +GV Q RKRAFI  +     + E P   H             
Sbjct: 152  FRSMGYYNTDSWLLNAADYGVPQIRKRAFIVGSRSRIPI-EKPRTTH------------- 197

Query: 1346 NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAV 1405
                      +NG   R ++V D I DLP + +G+S +   Y+  P + FQ+++R     
Sbjct: 198  ---------GSNGQAPR-VSVFDAISDLPKIPDGSSSSRAAYKKPP-NKFQRQLRNGQRK 246

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
             T H++ + ++L L R +K+P   G +W D+P E ++++             +  K    
Sbjct: 247  PTQHVTTKNSDLVLKRIRKVPS--GGNWKDIPRELMQVNG------------DYEKIQKA 292

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
               ++ RL  +     +IT+     + GM  HP + R+ +VRE AR Q FPDSY+F G +
Sbjct: 293  HSMIYRRL-IKTEPSVTITN----FRKGMIIHPTEHRLFSVREAARIQTFPDSYKFEGGL 347

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAV 1552
                +Q+ +AVP  LA    +K+ EA+
Sbjct: 348  SSMQQQVSDAVPVFLA----KKVAEAI 370


>gi|228473386|ref|ZP_04058140.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga gingivalis
            ATCC 33624]
 gi|228275288|gb|EEK14086.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga gingivalis
            ATCC 33624]
          Length = 358

 Score =  144 bits (362), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 184/426 (43%), Gaps = 85/426 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +DIF+G GGLS G + +GI    + IE    A ++F  NH  + +L           
Sbjct: 2    LYGIDIFSGAGGLSLGAEMAGIQIC-YGIEINPSAAKSFTRNHKGAKVL----------- 49

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD +D     + ++L   +D   I           I GGPPCQGFS  N   ++  
Sbjct: 50   ---QGDIKDI----DPSKLKEGIDPVFI-----------IMGGPPCQGFSLSNTRTRNMQ 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            ++    + L F+ F    +P +F+LENV    +  +G+T  +       +GY+V   +L 
Sbjct: 92   NENNF-LFLEFVRFVQELKPTWFVLENVWGLTNMEEGKTKNMIEDCFRALGYEVNSQVLW 150

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R R F+   + H    E+PEP                              
Sbjct: 151  ASDYGVPQNRNRFFM-VGNRHGIEFEFPEPFE---------------------------- 181

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQN--DPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             + +TV + IGDLP + NG      +Y+      S + + +R +    T +     N L 
Sbjct: 182  -KKITVEEAIGDLPDLDNGEMLEKGKYKVPCSEASEYAQLMREHSHYPTQNFVSRNNNLV 240

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R   I  + G +W  +PDE                + N A +     G++ RL    +
Sbjct: 241  IQRYTHI--KQGQNWRAIPDE---------------LMQNYADKGRTHSGIYKRLI--AD 281

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             P+ +       +  M  HP QDR L+VRE AR Q FPD + F G I H  +QIGNAVPP
Sbjct: 282  QPSVVISNY---RKSMLIHPYQDRGLSVREAARLQSFPDDFYFEGPISHIQQQIGNAVPP 338

Query: 1539 TLAFAL 1544
             LA A+
Sbjct: 339  LLAKAV 344


>gi|240280627|gb|EER44131.1| DNA methyltransferase [Ajellomyces capsulatus H143]
 gi|325089115|gb|EGC42425.1| DNA methyltransferase [Ajellomyces capsulatus H88]
          Length = 1234

 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 195/458 (42%), Gaps = 83/458 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILR 1178
            L  L+IF+G G    GLQ+ G    KWA+E+       ++ NH  PE + L         
Sbjct: 660  LRALNIFSGGGSFDRGLQEGGAIENKWAVEWSHVPMLTYRANHDNPEKIHLF-------- 711

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                  G   D +  +   E  AS   N++  L   G V FI+ G PCQG+S +N   +S
Sbjct: 712  -----LGSVNDFLLQALQGEAKAS---NLVAKL---GDVGFISAGSPCQGYSSVNGRKES 760

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL----EMGYQV 1294
              S     MI +  S+ D+++P+Y +LENV   ++ +     R  L  LL     MGYQV
Sbjct: 761  AVSMQNSSMIASVASYVDFYRPQYAILENV---IAMSNRTHERSPLCQLLCTFVGMGYQV 817

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
            R   L+A +FG  QSR R FI  A+P   LP  P   H       +  L +         
Sbjct: 818  RILNLDAWSFGAPQSRSRLFIVIAAPGLQLPAHPPLTHSHPPKTTQKSLGE--------- 868

Query: 1355 TANGAPFRA----------MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA 1404
              NG PF            + + +++ DLP +G      I    + PV +          
Sbjct: 869  APNGLPFGKRHWEVPVFDFLPISESVKDLPKIGRSRITPISHPDHRPVRF---------- 918

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
                   + ++  +LI    IPK P      L D   +       D       N  +R+ 
Sbjct: 919  -------ESISNQHLI--NSIPKAPRL--QGLRDAVARGFFSPEED-------NARQRNC 960

Query: 1465 Q--WKGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
            Q  W  +   L      PT  T P P  K  G   H ++DR+++V E  R+QGFPD+   
Sbjct: 961  QRAWSRVHPHL----LMPTVTTFPSPFCKFTGRWLHWEEDRVMSVMEARRAQGFPDNEVL 1016

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAV-ESKRST 1558
             GS   + + +GN+V   +A ALG  ++ AV E+ R T
Sbjct: 1017 VGSPAQQWKVVGNSVARQVALALGLVVRNAVLENIRKT 1054


>gi|385229364|ref|YP_005789280.1| cytosine specific DNA methyltransferase [Helicobacter pylori Puno135]
 gi|344335802|gb|AEN17763.1| cytosine specific DNA methyltransferase [Helicobacter pylori Puno135]
          Length = 355

 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 182/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLERLKEFDALIGLDCDKQALITFENNHKNAIGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKEKLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   +E  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSEAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|317127844|ref|YP_004094126.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
 gi|315472792|gb|ADU29395.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM 2522]
          Length = 360

 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 190/435 (43%), Gaps = 81/435 (18%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+GCGG+SEG + +G       +++   A E F  N   S           RA+  
Sbjct: 5    VIDLFSGCGGISEGFRLAGFD-ILGGLDFNPDAVETFHQNFLNS-----------RAI-- 50

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C D ++     +  E+    D        L G +D I GGPPCQGFS  NR+ Q   + 
Sbjct: 51   -CADIQEI----KNDEITYMFD--------LTGDIDVIVGGPPCQGFSSANRW-QKEMAD 96

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + ++   ++ F + F P+  L+ENVR  ++ + G   +   + L  +GY V   +L+A 
Sbjct: 97   PRNKLFYEYIRFVEVFMPKVVLIENVRGILTRDNGYARKKIYSILENLGYIVDSAVLDAS 156

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             FGV Q R RAF  A     T  + P+            +  D  +   +          
Sbjct: 157  EFGVPQKRLRAFFIA-----TRKDIPQ------------ITFDKLKKKPI---------- 189

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEY--QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
             + V+D +G+L  +     K    Y   + P S ++K +R +   + +H  +   ++   
Sbjct: 190  -VLVKDALGELYELEEQMGKNRSNYFLSSKPDSSYRKYLRNSKNSIENHEIRYPAKIQQD 248

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R   +P+  G +W D+P+                  PN   R N+    + RLD E    
Sbjct: 249  RIACVPQ--GGNWRDIPES---------------YFPNN--RKNRHSSAYKRLDEEDVSV 289

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T  T           FH    RI TVRE AR Q F D + F+GS   ++RQ+GNAVPP L
Sbjct: 290  TIDTGNAHSNYFHTIFH----RIPTVREAARLQSFNDDFIFYGSRTSQYRQVGNAVPPLL 345

Query: 1541 AFALGRKLKEAVESK 1555
            A A+   +KE + ++
Sbjct: 346  AKAVAVAIKEGLTNE 360


>gi|421716108|ref|ZP_16155420.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R037c]
 gi|407222006|gb|EKE91809.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R037c]
          Length = 355

 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH              +  M  
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNH--------------KNAMGV 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420408038|ref|ZP_14907197.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4216]
 gi|393025523|gb|EJB26629.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4216]
          Length = 355

 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 185/429 (43%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD    ++ +E  E    L + +        +++ I GGPPCQGFS  N+         
Sbjct: 52   CGD----ITQTEIKEKVIKLAQKL--------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|350271400|ref|YP_004882708.1| cytosine-specific methyltransferase [Oscillibacter valericigenes
            Sjm18-20]
 gi|348596242|dbj|BAL00203.1| cytosine-specific methyltransferase [Oscillibacter valericigenes
            Sjm18-20]
          Length = 360

 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 192/434 (44%), Gaps = 84/434 (19%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + +++F+GCGGLS GL  +G      A+E  + A + ++LNHP       N N+I+    
Sbjct: 3    SAIELFSGCGGLSSGLIAAGFDILS-AVEINQIAADTYRLNHP-------NVNLIV---- 50

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                   D V    AA L    +  +       G++D + G  PCQGFS + R  +S  +
Sbjct: 51   -------DDVRNVTAASLLRQHNLRI-------GELDLLAGCSPCQGFSRL-RKGESGST 95

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ-TFRLTLASLLEMGYQVRFGILE 1300
              + +++L FL      +P+   +ENV   ++   G+  F   L  L  +GY V + I++
Sbjct: 96   DPRNQLVLEFLRLVRGLRPKTIFMENVPGLINTEYGKKLFDKILPELTRLGYAVDYKIVD 155

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
               +GV Q R+R F+   S +   P E PE  H  A+P + I       ++ VR   NG 
Sbjct: 156  TADYGVPQFRRR-FVLLGSRYKRHPIELPETTH--ASPNVNIA-QHKLPWNTVRIALNGT 211

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            P               + NGA+        DP          N+ +   H    + ELN+
Sbjct: 212  P--------------VLENGAT--------DP----------NIPL---HTCSRVGELNM 236

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             R Q +P   G+     PD  +K                     N ++ ++GR+ W+   
Sbjct: 237  RRIQAVPHNGGSRSSFPPDLVLKCHQ---------------DYPNGFRDVYGRMHWDQPS 281

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT IT        G   HP+QDR +++ E A+ Q FPD+Y F G+   K  QIGNAVP  
Sbjct: 282  PT-ITGGCTNITRGRFIHPNQDRGISLYEAAKLQTFPDNYIFSGNFGEKSLQIGNAVPVR 340

Query: 1540 LAFALGRKLKEAVE 1553
            LA  +G +L + + 
Sbjct: 341  LAQVMGTQLIQCLN 354


>gi|340620812|ref|YP_004739263.1| MHphi(C) [Capnocytophaga canimorsus Cc5]
 gi|339901077|gb|AEK22156.1| MHphi(C) [Capnocytophaga canimorsus Cc5]
          Length = 358

 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 187/426 (43%), Gaps = 85/426 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +DIF+G GGLS G + +GI  + + IE    A ++F  NH  + +L           
Sbjct: 2    LYGIDIFSGAGGLSLGAEMAGIQIS-YGIEINPSAAKSFTRNHKGAKVL----------- 49

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD +D     + ++L    DE V            I GGPPCQGFS  N   ++  
Sbjct: 50   ---QGDIKDI----DPSKLKKG-DEPVF----------IIMGGPPCQGFSLSNTRTRNMQ 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            ++    + L F+ F    +P +F+LENV    +  +G+   +       +GY+V   +L 
Sbjct: 92   NEKNF-LFLEFVRFVRELKPTWFVLENVWGLTNIEEGKAKSMIEDCFRALGYEVNSQVLW 150

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R R F+   + H    E+PEP                              
Sbjct: 151  ASDYGVPQNRNRFFM-VGNRHGIKFEFPEPFD---------------------------- 181

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQ--NDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             + +TV + IGDLP + NG      +Y+  +   S + + +R +    T +     N+L 
Sbjct: 182  -KKITVEEAIGDLPDLENGEMLEKGKYKVPSSVASEYAQLMREHSHYPTQNFVSRNNDLV 240

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R + I  + G +W  +PDE                + N A +     G++ RL    +
Sbjct: 241  IQRYKYI--KQGQNWRAIPDE---------------LMQNYADKGRTHSGIYKRLI--AD 281

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             P+ +       +  M  HP QDR L+VRE AR Q FPD + F G I H  +QIGNAVPP
Sbjct: 282  QPSVVISNY---RKSMLIHPYQDRGLSVREAARLQSFPDDFYFEGPISHIQQQIGNAVPP 338

Query: 1539 TLAFAL 1544
             LA A+
Sbjct: 339  LLAKAV 344


>gi|386752038|ref|YP_006225257.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi169]
 gi|384558296|gb|AFH98763.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi169]
          Length = 353

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 183/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFDALIGLDCDKQALITFENNHKNAIGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKEKLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|210134246|ref|YP_002300685.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
 gi|210132214|gb|ACJ07205.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
          Length = 355

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAAIKEKVIKLAQKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N + L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSSKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|392862764|gb|EAS36569.2| DNA (cytosine-5-)-methyltransferase [Coccidioides immitis RS]
          Length = 1117

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 155/622 (24%), Positives = 254/622 (40%), Gaps = 122/622 (19%)

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPD-DISAEKAY 1012
            K++   +  G  V ++   V + +EI+        EV   +VKVR   R   D + +   
Sbjct: 475  KSQDRKYNVGDTVLVETSDVLEPVEIV--------EVSGDEVKVRVLLRRSRDFNDDS-- 524

Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLK 1072
            C     VY     H I +E I  +C +R                 FF E   D  KG + 
Sbjct: 525  CRPNELVYTGHFRH-IHLEQIRRRCHIR-----------------FFSEEQRD--KGDIP 564

Query: 1073 QLPAHIKLRYSSGSLDSEAASRR-----KKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
              P +     S+  +  E +++      +     +G D LE +++        L  L++F
Sbjct: 565  A-PYNRDGNGSAFYITCEESAQELRPMTRPASFCDGFDPLEAKRK--------LRALNLF 615

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILRAVMEKCG 1185
             G G    GL++     ++WA+E++ P    ++ NH  PE + L               G
Sbjct: 616  CGGGTFDRGLEEGTAIRSEWAVEWDLPPMLTYRANHTNPEEVKLFR-------------G 662

Query: 1186 DAEDCVSTS---EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              +D ++ +   + ++L A L           GQV+FI+ G PCQG+S  N    +  S 
Sbjct: 663  SVDDFLAVAIRGQRSDLVAKL-----------GQVEFISAGSPCQGYSLANSRKGNKVSL 711

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGILEA 1301
                MI +  ++ D+++P+Y +LENV    S  ++       + + + +GYQ+R   L+A
Sbjct: 712  RNSSMIASVAAYVDFYRPQYAILENVPAMASKTHERNPLSQLICAFVGLGYQLRLMHLDA 771

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP- 1360
             ++G  QSR R F+  A+P   LPE P   H  + P    + S       +    NG P 
Sbjct: 772  WSYGAPQSRSRLFLLIAAPGLQLPEHPALTH--SHPMGTTLRS-------LGEAPNGLPF 822

Query: 1361 ---------FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                     F+ ++  +   DLP +      +I         W   R   N + +T  I 
Sbjct: 823  GERRWEVPIFKFVSAYEGTKDLPDLDRAKIASI--------PWPDHRTSRNESNMTQVI- 873

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
                        ++PK P       P+   K      ++  P   P   KR N     + 
Sbjct: 874  ----------IDQVPKHPRKS--GFPEAMTK----GFLNFDP--FPGDIKRRNPPSRAWS 915

Query: 1472 RLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            R+D     PT  T   P  K  G   H  +DR+LT+ E  R+QG+PDS    G   H+ +
Sbjct: 916  RVDPNFLIPTITTAISPHCKFTGRWLHWREDRLLTIMEARRAQGYPDSEVLVGRAAHQWK 975

Query: 1531 QIGNAVPPTLAFALGRKLKEAV 1552
             +GN+V   +A ALG  ++EA 
Sbjct: 976  IVGNSVARQVALALGLSIREAT 997



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 519 WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSF 561
           WYRLGKP+++YAP++   L  A +A   +  LKE   V+  +F
Sbjct: 174 WYRLGKPAREYAPYHHTFLWVANLAKHFVDYLKENRNVALSAF 216


>gi|323650463|gb|ADX97312.1| M.FspI [Fischerella muscicola SAG 1427-1 = PCC 73103]
          Length = 385

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 191/439 (43%), Gaps = 67/439 (15%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GGL+ G   +G  S   AI+ +      +K N+P + ++  +   I      
Sbjct: 5    VIDLFAGAGGLTTGFHMAGFESL-CAIDVDAKPLATYKHNYPNTKIIHQDIRKI------ 57

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS-----GMNRFNQ 1237
               +  D         LA  L    +  L          GGPPCQGFS     G    N 
Sbjct: 58   ---NPSDL-------RLALGLQREELTAL---------IGGPPCQGFSRNIPAGYRYLND 98

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
            S     + ++   FL F + F+P Y ++ENV   +    G         L  + Y+V   
Sbjct: 99   S-----RNQLYRTFLEFVEEFRPIYVVMENVPEILKAYNGVIREEITQQLESLSYKVVSS 153

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF-AAPELKIMLSDNYQYSAVRSTA 1356
             L A  +G+ Q+R RAF  A+  H     +P+P H      + +   S N Q + + +  
Sbjct: 154  SLNAAHYGIPQTRSRAFFIASLDHYL--HFPKPTHFGDIRSDYRTRKSCN-QLNLLET-- 208

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            N +P   +TVRD IGDLP +  G       Y + P + +Q  IR     + +H+++ +  
Sbjct: 209  NVSPL--VTVRDAIGDLPPLEAGQKYEAEVYPSAPQTTYQAMIRNQSVKVVNHVARALTP 266

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            + L R + + +  G D  DLP E           L P       K++  + G +GRL W+
Sbjct: 267  IQLSRVRLLTE--GQDARDLPTE-----------LAP-------KKY--YSGAYGRLYWD 304

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T IT        G  FHP QDR +T+RE AR   +PD++ F G+      QIG +V
Sbjct: 305  KPART-ITRWVFHPGSGRFFHPTQDRTITIREAARLHSYPDNFHFLGTYTDMASQIGESV 363

Query: 1537 PPTLAFALGRKLKEAVESK 1555
            PP L+  +   + +A   K
Sbjct: 364  PPFLSKVIALSILQAHSQK 382


>gi|290968468|ref|ZP_06560007.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
            str. 28L]
 gi|290781464|gb|EFD94053.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
            str. 28L]
          Length = 699

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 191/435 (43%), Gaps = 83/435 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG+S G+ ++    TK A++  E   + FK N PES ++I             
Sbjct: 341  LDLFCGAGGMSYGMHKNSHFVTKVALDINEKLAQTFKENIPESELII------------- 387

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD +D            ++ E +IN L    +V+ I GGPPCQGFS   +  +      
Sbjct: 388  -GDIQD-----------KAIKEKIIN-LSKKNKVNMIIGGPPCQGFSLKGK--KLGLDDP 432

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + + +L      +P  F++ENV++ +S + G      ++ + ++GY+V  GI+ A  
Sbjct: 433  RNFLFIEYLHLVQELKPLVFVIENVKSLMSTSNGWFKNQIISEIKKLGYEVSVGIVRASD 492

Query: 1304 FGVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
            +GV Q+R+R  F+ + +   +LPE          P +K                     +
Sbjct: 493  YGVPQNRERVIFLCSKNKAISLPE----------PTVK---------------------K 521

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
              TVRD I DL  + +        Y  +  + +QK +R +   L +H +   +E+ + + 
Sbjct: 522  TTTVRDAIEDLAYLNSNEGDFEQSYITEAKTEYQKLMRKDSDRLYNHKASNHSEIAIHKL 581

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
              IP   G ++                  +P  L    K ++ W    GRL W+   PT 
Sbjct: 582  SMIPPEKGKEY------------------LPENLLGKQKFNSTW----GRLKWDEPSPT- 618

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            I         G   HP  +R +T+RE AR Q F D + F+G+      QIGNAVPP +A 
Sbjct: 619  IDTRFDAASNGTNNHPFLNRSITLREAARIQSFDDRFIFYGNKVDIRTQIGNAVPPLMAK 678

Query: 1543 ALGRKLKEAVESKRS 1557
            A+   + E + +  S
Sbjct: 679  AIADHIYENLVNNES 693


>gi|380483902|emb|CCF40335.1| cytosine-specific methyltransferase [Colletotrichum higginsianum]
          Length = 1246

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 191/440 (43%), Gaps = 55/440 (12%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L   D+F G G    GL+++G  +  W                       N+ N   +AV
Sbjct: 716  LRGADLFCGGGNFGRGLEEAGAITMDWC----------------------NDMNA--KAV 751

Query: 1181 MEKCGDAEDCVS--TSEAAELAA-SLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                 +A + V+  T    EL   +L     +N+P  GQVDF++GG PC GFS +     
Sbjct: 752  HTYVANAGNTVAPFTGPIEELQKLALLGTFSDNVPEIGQVDFVSGGSPCPGFSRLTSDKT 811

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV---SFNKGQTFRLTLASLLEMGYQV 1294
                     ++ AF SF D ++P+Y LLENV   V   +  K   FR  + +++ +GYQ 
Sbjct: 812  KPKQLKNQSLVAAFASFIDTYRPKYGLLENVEGIVQPETKKKEDVFRQLICAIVGLGYQT 871

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV-FAAPELKIMLSDNYQYSAVR 1353
            R  +L++ + G  Q+R R F+  A+P   LP+ P   H  + A +LK+    N Q+   R
Sbjct: 872  RCFLLDSWSHGAPQTRTRVFLCFAAPGLKLPKVPRHSHSHYKARKLKLGQLSNGQFMIER 931

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW-FQKRIRGNMAVLTDHISK 1412
              +     + ++      DLP + +G      E+ +  V+    K +R  M+++  H   
Sbjct: 932  QLSVPTALKFVSAAAATADLPDIKDGKPDFCAEFPDHRVACGVTKNLRTQMSIIPFH-PY 990

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             M+ L               W D          G +      C P+  +R N+    FGR
Sbjct: 991  AMDFL-------------LSWRD--------GKGTMTKAERQCFPDRGRRVNKGSRAFGR 1029

Query: 1473 LDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            +       T  T  QP    +G   H +Q+R LTV E  R+QGF D+    G+   +++ 
Sbjct: 1030 VKPSDPMHTITTKSQPSDSSIGKILHWNQNRPLTVMEARRAQGFRDNDIILGNPVDQYQI 1089

Query: 1532 IGNAVPPTLAFALGRKLKEA 1551
            IGN+V   ++ ALG   +EA
Sbjct: 1090 IGNSVSREVSIALGVSFREA 1109


>gi|384887098|ref|YP_005761609.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            52]
 gi|261838928|gb|ACX98693.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            52]
          Length = 355

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                           + ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRFS------------------------FDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGRQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|304407248|ref|ZP_07388901.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus YK9]
 gi|304343689|gb|EFM09530.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus YK9]
          Length = 401

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 197/466 (42%), Gaps = 116/466 (24%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             LD+F+GCGGL EG  Q+G      ++E +E A    K NHPE+ +L             
Sbjct: 4    VLDLFSGCGGLGEGFLQAGFD-IAASVEIDEKACATQKFNHPETQVL------------- 49

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS----------GM 1232
                       ++ A    SL   + N        D I GGPPCQGFS          G 
Sbjct: 50   -------QADLTQLAPRDLSLATGITN-------FDLIIGGPPCQGFSLIGTRLGTGKGF 95

Query: 1233 NRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG-------QTFRLTLA 1285
              F +   +K+  E    F+ +  YFQP+ FL+ENV    S +KG       Q F     
Sbjct: 96   GEFGEDPRNKLYKE----FVRYVRYFQPKMFLMENVPGLFSMHKGAVRENIEQDFSFDDP 151

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
              L +GY V   I++A  FGV QSR+R  F+      + +PE P    VF   +      
Sbjct: 152  EGLFVGYHVVSDIVKAVEFGVPQSRERVIFLGVRKDLNIIPEHPRA--VFKEEDF----- 204

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV----GNGASKTIMEYQNDPVSWFQ---K 1397
                                TV+D IGDLP +    G  + K     +   +       K
Sbjct: 205  -------------------FTVQDAIGDLPKLDIRDGEFSVKNTPRNEAPYLKLLNTNAK 245

Query: 1398 RIRGNMAV----LTDHISKEMNELN--LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDL 1451
            RI+ +       L +H ++  NE +  + R  +            P + +K       DL
Sbjct: 246  RIKRDTGFEDGYLYNHTTRFQNERDREIFRILE------------PFQNLKTLDP---DL 290

Query: 1452 IPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRE 1508
            IP  L       N +   + +LD++   PT I     + K G+ F HPD  Q R ++VRE
Sbjct: 291  IPIRL------RNGFDDFYRKLDYKKPSPTIIAH---LHKDGLAFIHPDGNQARSISVRE 341

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
             AR Q FPD++ F G      +QIGNAVPP LA+ LG  +K+ +++
Sbjct: 342  AARLQSFPDNFVFIGPQTAMFKQIGNAVPPLLAYHLGLHIKKTLDA 387


>gi|425462210|ref|ZP_18841684.1| Cytosine specific DNA methyltransferase (modular protein)
            [Microcystis aeruginosa PCC 9808]
 gi|389824798|emb|CCI25960.1| Cytosine specific DNA methyltransferase (modular protein)
            [Microcystis aeruginosa PCC 9808]
          Length = 381

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 194/442 (43%), Gaps = 79/442 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGL+ G   +G  S   AI+    A   ++ N+P++           R   E 
Sbjct: 6    IDLFSGAGGLTTGFHLAGFESI-CAIDVNAKALATYQHNYPKT-----------RTFQED 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS-----GMNRFNQS 1238
                   V+ SE   L   L    +  L          GGPPCQGFS     G    N S
Sbjct: 54   IRK----VNPSEL-RLYLGLQREELTAL---------IGGPPCQGFSRNIPAGYRYLNDS 99

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 +  +  +FL F   F+P + ++ENV   +    G      +A L   GYQV    
Sbjct: 100  -----RNHLYKSFLGFVQEFRPLHVVMENVPEILKAYGGIIRDEIVAHLESWGYQVVTTS 154

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS---- 1354
            L A  +GV Q+R RAF  A+   D LP  P+  H   + +++   SD   Y AV+S    
Sbjct: 155  LNAAYYGVPQTRSRAFFLASL--DRLPSLPQATH---SGDIR---SD---YKAVKSWTQL 203

Query: 1355 ---TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                 N AP    TV+D I DLP +  G +     Y  +P + +Q+++R     + +HI+
Sbjct: 204  TLLEPNIAP--VTTVKDAISDLPTLEAGQAYDHEIYTREPETIYQQKMREQSQKIVNHIA 261

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            + +  + + R Q + +  G D  DLP E           L P       K+H  + G +G
Sbjct: 262  RALTPIQMSRVQILAE--GQDARDLPAE-----------LAP-------KKH--YSGAYG 299

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+    T IT        G  FHP Q+R +T+RE AR   +PD + F G+      Q
Sbjct: 300  RLSWDKPART-ITRWFFHPGSGRFFHPTQNRTITIREAARLHSYPDHFHFLGTYTDMASQ 358

Query: 1532 IGNAVPPTLAFALGRKLKEAVE 1553
            IG +VPP L   +   + + +E
Sbjct: 359  IGESVPPLLGKVVADSMGQNLE 380


>gi|119194775|ref|XP_001247991.1| hypothetical protein CIMG_01762 [Coccidioides immitis RS]
          Length = 1040

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 154/621 (24%), Positives = 253/621 (40%), Gaps = 120/621 (19%)

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013
            K++   +  G  V ++   V + +EI+        EV   +VKVR   R      + + C
Sbjct: 398  KSQDRKYNVGDTVLVETSDVLEPVEIV--------EVSGDEVKVRVLLRRSRDFNDDS-C 448

Query: 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQ 1073
                 VY     H I +E I  +C +R                 FF E   D  KG +  
Sbjct: 449  RPNELVYTGHFRH-IHLEQIRRRCHIR-----------------FFSEEQRD--KGDIPA 488

Query: 1074 LPAHIKLRYSSGSLDSEAASRR-----KKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
             P +     S+  +  E +++      +     +G D LE +++        L  L++F 
Sbjct: 489  -PYNRDGNGSAFYITCEESAQELRPMTRPASFCDGFDPLEAKRK--------LRALNLFC 539

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILRAVMEKCGD 1186
            G G    GL++     ++WA+E++ P    ++ NH  PE + L               G 
Sbjct: 540  GGGTFDRGLEEGTAIRSEWAVEWDLPPMLTYRANHTNPEEVKLFR-------------GS 586

Query: 1187 AEDCVSTS---EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             +D ++ +   + ++L A L           GQV+FI+ G PCQG+S  N    +  S  
Sbjct: 587  VDDFLAVAIRGQRSDLVAKL-----------GQVEFISAGSPCQGYSLANSRKGNKVSLR 635

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
               MI +  ++ D+++P+Y +LENV    S  ++       + + + +GYQ+R   L+A 
Sbjct: 636  NSSMIASVAAYVDFYRPQYAILENVPAMASKTHERNPLSQLICAFVGLGYQLRLMHLDAW 695

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP-- 1360
            ++G  QSR R F+  A+P   LPE P   H  + P    + S       +    NG P  
Sbjct: 696  SYGAPQSRSRLFLLIAAPGLQLPEHPALTH--SHPMGTTLRS-------LGEAPNGLPFG 746

Query: 1361 --------FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                    F+ ++  +   DLP +      +I         W   R   N + +T  I  
Sbjct: 747  ERRWEVPIFKFVSAYEGTKDLPDLDRAKIASI--------PWPDHRTSRNESNMTQVI-- 796

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
                       ++PK P       P+   K      ++  P   P   KR N     + R
Sbjct: 797  ---------IDQVPKHPRKS--GFPEAMTK----GFLNFDP--FPGDIKRRNPPSRAWSR 839

Query: 1473 LDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            +D     PT  T   P  K  G   H  +DR+LT+ E  R+QG+PDS    G   H+ + 
Sbjct: 840  VDPNFLIPTITTAISPHCKFTGRWLHWREDRLLTIMEARRAQGYPDSEVLVGRAAHQWKI 899

Query: 1532 IGNAVPPTLAFALGRKLKEAV 1552
            +GN+V   +A ALG  ++EA 
Sbjct: 900  VGNSVARQVALALGLSIREAT 920



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 519 WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSF 561
           WYRLGKP+++YAP++   L  A +A   +  LKE   V+  +F
Sbjct: 174 WYRLGKPAREYAPYHHTFLWVANLAKHFVDYLKENRNVALSAF 216


>gi|428210295|ref|YP_007094648.1| DNA-cytosine methyltransferase [Chroococcidiopsis thermalis PCC 7203]
 gi|428012216|gb|AFY90779.1| DNA-cytosine methyltransferase [Chroococcidiopsis thermalis PCC 7203]
          Length = 390

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 195/463 (42%), Gaps = 110/463 (23%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E    ++ +F G GGL  G++Q+G  +    +E +  + +   LN P         N + 
Sbjct: 3    EGRAISISLFTGAGGLDIGMEQAGFHTVS-IVEKDSDSAKTIALNRPYL------KNAVA 55

Query: 1178 RAVMEKCGDAEDCVSTSEAA-ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
            R + +    A D +     A +L  SL          PG++D + GGPPCQ FS   +  
Sbjct: 56   RDIQQI--KASDLLEEGGCAIDLGRSLR---------PGEIDLVTGGPPCQPFSTAGK-- 102

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN--------------------- 1275
            + +    +  + + F+   +  QPR+F++ENVR  +S                       
Sbjct: 103  RGSVIDPRGSLFMDFIRIVEQLQPRFFVMENVRGLLSAPIRHRPHLQRGMGYPPLEQDEM 162

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            +G   ++ LA +  +GYQV + +LEA  +GV Q+R+R  I+  S       +P P H  +
Sbjct: 163  QGSALQVVLAEMKSLGYQVVYNLLEAADYGVPQNRERV-IFIGSRESEAVTFPLPTHSNS 221

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
               L                      +  T++D + +L               NDP   +
Sbjct: 222  GISLP---------------------KWHTLQDALINL---------------NDPQPEY 245

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC 1455
                       T + +  +  L L++        G +W +LPDE  K + G   +     
Sbjct: 246  -----------TPYSNSRLKYLKLLKG-------GQNWRNLPDELKKEAMGGAYN----- 282

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
                        G + RL W    PT  T P       MC HP++ R L+VRECA+ Q F
Sbjct: 283  ------SGGGKVGFYRRLSWNKPSPTVTTSPY-QKATDMC-HPEELRPLSVRECAKIQTF 334

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            PD + F+GS   K+RQIGNAVP  LA A+G+ L + ++ +++ 
Sbjct: 335  PDDWIFYGSTASKYRQIGNAVPILLAQAIGKHLYKLLQEEKTA 377


>gi|419418017|ref|ZP_13958382.1| cytosine specific DNA methyltransferase [Helicobacter pylori NCTC
            11637 = CCUG 17874]
 gi|384374926|gb|EIE30275.1| cytosine specific DNA methyltransferase [Helicobacter pylori NCTC
            11637 = CCUG 17874]
          Length = 355

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 183/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|419808401|ref|ZP_14333305.1| Type II restriction modification system C5-cytosine and N4-cytosine
            or N6-adenine DNAmethyltransferase [Mycoplasma agalactiae
            14628]
 gi|390605804|gb|EIN15177.1| Type II restriction modification system C5-cytosine and N4-cytosine
            or N6-adenine DNAmethyltransferase [Mycoplasma agalactiae
            14628]
          Length = 593

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 190/438 (43%), Gaps = 98/438 (22%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GG S GL       T  A ++ E A   FK N P++  ++ +  +  R V E+
Sbjct: 7    LDLFSGAGGFSYGLDSLNEFETLIATDFNESALNTFKRNIPKAETILGD--ITKREVKEQ 64

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                      ++A EL                +++ I GGPPCQGFS  N+  +      
Sbjct: 65   I--------INKANEL----------------KINMIIGGPPCQGFS--NKGKKKGLDDP 98

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L +L   +   P  F++ENV+  ++  KG      +  +  MGY++ +G+L A  
Sbjct: 99   RNFLFLEYLDIVEKVSPELFIIENVKTMLTAVKGYFIDQIVKKIELMGYKISYGVLNAKD 158

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FG+ QSR RA I A           + M V   P                   NG    +
Sbjct: 159  FGIPQSRPRAIIIAH----------KEMAVPLPP------------------PNGI---S 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE-----MNELN 1418
            +TVRD I DL  + +       +Y N+  S +QK +R     L +HI+ +     +N+LN
Sbjct: 188  VTVRDAISDLAYLNSADGDYESQYINNAQSEYQKLMRKGSLKLFNHIATKHSVDVINKLN 247

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            L     IP   G ++                      L    K + ++   +GRL W  N
Sbjct: 248  L-----IPPECGKEY----------------------LSEELKGNQKFNTTWGRLKW--N 278

Query: 1479 FPTSITDPQ-PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
              +S  D +      G   HP+ +R +T RE AR Q FPD + F GS     +QIGNAVP
Sbjct: 279  TTSSTIDTRFDTPSNGTNTHPELNRAITPREAARLQSFPDKFIFTGSKTEICKQIGNAVP 338

Query: 1538 PTLAFALG----RKLKEA 1551
            P LA A+G    R+LK +
Sbjct: 339  PLLAKAIGLEILRQLKPS 356


>gi|217032842|ref|ZP_03438321.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298737011|ref|YP_003729541.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945425|gb|EEC24089.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298356205|emb|CBI67077.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 361

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L             ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAAIKEKVIKLAQTLG------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420443049|ref|ZP_14941978.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-41]
 gi|393061454|gb|EJB62319.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-41]
          Length = 361

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            ++V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VSVQDAISDLAYLCSNEGSFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|303310981|ref|XP_003065502.1| DNA (cytosine-5)-methyltransferase, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240105164|gb|EER23357.1| DNA (cytosine-5)-methyltransferase, putative [Coccidioides posadasii
            C735 delta SOWgp]
          Length = 1117

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 152/624 (24%), Positives = 253/624 (40%), Gaps = 126/624 (20%)

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013
            K++   +  G  V ++   V + +EI+        EV   +VKVR   R      + + C
Sbjct: 475  KSQDRKYNVGDTVLVETSDVLEPVEIV--------EVSGDEVKVRVLLRRSRDFNDDS-C 525

Query: 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQ 1073
                 VY     H I +E I  +C +R                 FF E   D  KG +  
Sbjct: 526  RPNELVYTGHFRH-IHLEEIRRRCHIR-----------------FFSEEQRD--KGGIPA 565

Query: 1074 LPAHIKLRYSSGSLDSEAASR-----RKKGKCIEGEDELEVEKQGGASQENHLATLDIFA 1128
             P +     S+  +  E +++      +     +G D LE +++        L  L++F 
Sbjct: 566  -PYNRDGNGSAFYITCEESAQGLRPMTRPASFCDGFDPLEAKRK--------LRALNLFC 616

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILRAVMEKCGD 1186
            G G    GL++     ++WA+E++ P    ++ NH  PE + L               G 
Sbjct: 617  GGGTFDRGLEEGTAIRSEWAVEWDLPPMLTYRANHTNPEDVKLFR-------------GS 663

Query: 1187 AEDCVSTS---EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             +D ++ +   + ++L A L           GQV+FI+ G PCQG+S  N    +  S  
Sbjct: 664  VDDFLAVAIRGQGSDLVAKL-----------GQVEFISAGSPCQGYSLANSRKGNKVSLR 712

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
               MI +  ++ D+++P+Y +LENV    S  ++       + + + +GYQ+R   L+A 
Sbjct: 713  NSSMIASVAAYVDFYRPQYAILENVPAMASKTHERNPLSQLICAFVGLGYQLRLMHLDAW 772

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA---NGA 1359
            ++G  QSR R F+  A+P   LPE P   H             +   + +RS     NG 
Sbjct: 773  SYGAPQSRSRLFLLIAAPGLQLPEHPALTH------------SHPMGTTIRSLGEAPNGL 820

Query: 1360 P----------FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
            P          F+ ++  +   DLP +      +I         W   R   N       
Sbjct: 821  PFGERRWEVPIFKFVSAYEGTKDLPDLDRAKVASI--------PWPDHRTSRN------- 865

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
                M ++ + +  K P++ G           +  T   ++  P   P   KR N     
Sbjct: 866  -ESNMTQVIIDQVPKHPRKSGFS---------EAMTKGFLNFDP--FPGDIKRRNPPSRA 913

Query: 1470 FGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            + R+D     PT  T   P  K  G   H  +DR+LT+ E  R+QG+PDS    G   H+
Sbjct: 914  WSRVDPNFLIPTITTAISPHCKFTGRWLHWREDRLLTIMEARRAQGYPDSEVLVGRAAHQ 973

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAV 1552
             + +GN+V   +A ALG  ++EA 
Sbjct: 974  WKIVGNSVARQVALALGLSIREAT 997



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 519 WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSF 561
           WYRLGKP+++YAP++   L  A +A   +  LKE   V+  +F
Sbjct: 174 WYRLGKPAREYAPYHHTFLWVANLAKHFVDYLKENRNVALSAF 216


>gi|320031459|gb|EFW13422.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 1040

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 154/626 (24%), Positives = 252/626 (40%), Gaps = 130/626 (20%)

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPD-DISAEKAY 1012
            K++   +  G  V ++   V + +EI+        EV   +VKVR   R   D + +   
Sbjct: 398  KSQDRKYNVGDTVLVETSDVLEPVEIV--------EVSGDEVKVRVLLRRSRDFNDDS-- 447

Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLK 1072
            C     VY     H I +E I  +C +R                 FF E   D  KG + 
Sbjct: 448  CRPNELVYTGHFRH-IHLEEIRRRCHIR-----------------FFSEEQRD--KGGIP 487

Query: 1073 QLPAHIKLRYSSGSLDSEAASR-----RKKGKCIEGEDELEVEKQGGASQENHLATLDIF 1127
              P +     S+  +  E +++      +     +G D LE +++        L  L++F
Sbjct: 488  A-PYNRDGNGSAFYITCEESAQGLRPMTRPASFCDGFDPLEAKRK--------LRALNLF 538

Query: 1128 AGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILRAVMEKCG 1185
             G G    GL++     ++WA+E++ P    ++ NH  PE + L               G
Sbjct: 539  CGGGTFDRGLEEGTAIRSEWAVEWDLPPMLTYRANHTNPEDVKLFR-------------G 585

Query: 1186 DAEDCVSTS---EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              +D ++ +   + ++L A L           GQV+FI+ G PCQG+S  N    +  S 
Sbjct: 586  SVDDFLAVAIRGQGSDLVAKL-----------GQVEFISAGSPCQGYSLANSRKGNKVSL 634

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGILEA 1301
                MI +  ++ D+++P+Y +LENV    S  ++       + + + +GYQ+R   L+A
Sbjct: 635  RNSSMIASVAAYVDFYRPQYAILENVPAMASKTHERNPLSQLICAFVGLGYQLRLMHLDA 694

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS---TANG 1358
             ++G  QSR R F+  A+P   LPE P   H             +   + +RS     NG
Sbjct: 695  WSYGAPQSRSRLFLLIAAPGLQLPEHPALTH------------SHPMGTTIRSLGEAPNG 742

Query: 1359 AP----------FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTD 1408
             P          F+ ++  +   DLP +      +I         W   R   N + +T 
Sbjct: 743  LPFGERRWEVPIFKFVSAYEGTKDLPDLDRAKVASI--------PWPDHRTSRNESNMTQ 794

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW-CLPNTAKRHNQWK 1467
             I             ++PK P          K   S       + +   P   KR N   
Sbjct: 795  VI-----------IDQVPKHP---------RKSGFSEAMTKGFLNFDPFPGDIKRRNPPS 834

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
              + R+D     PT  T   P  K  G   H  +DR+LT+ E  R+QG+PDS    G   
Sbjct: 835  RAWSRVDPNFLIPTITTAISPHCKFTGRWLHWREDRLLTIMEARRAQGYPDSEVLVGRAA 894

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAV 1552
            H+ + +GN+V   +A ALG  ++EA 
Sbjct: 895  HQWKIVGNSVARQVALALGLSIREAT 920



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 519 WYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSF 561
           WYRLGKP+++YAP++   L  A +A   +  LKE   V+  +F
Sbjct: 174 WYRLGKPAREYAPYHHTFLWVANLAKHFVDYLKENRNVALSAF 216


>gi|298253558|ref|ZP_06977348.1| site-specific DNA methylase [Gardnerella vaginalis 5-1]
 gi|297532325|gb|EFH71213.1| site-specific DNA methylase [Gardnerella vaginalis 5-1]
          Length = 317

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 154/337 (45%), Gaps = 55/337 (16%)

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
            ++D I GGPPCQGFS   +  + T    +  +   ++   +  +P+YF++ENV N ++  
Sbjct: 29   KIDVIIGGPPCQGFS--QKGQRKTIYDKRNFLFEYYVKVVELVKPKYFVMENVPNLLTAE 86

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            KG  F         MGY ++ G+L A  FGV Q+RKRA I     +   P  P  ++   
Sbjct: 87   KGYFFNEIETLFNAMGYFLQHGVLNAADFGVPQNRKRAVIIGKM-NGVAPSLPSSLN--- 142

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                                        +T+ D I DL  + +G    + EY+  P S +
Sbjct: 143  --------------------------EKVTIWDAISDLAFLESGEGDEVQEYRYAPQSEY 176

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC 1455
            +K++RG+  +L +H + + + L+L R + IP  P A    LP E +  S           
Sbjct: 177  EKKLRGHANLLYNHKATKHSPLSLKRLRMIP--PNAGKEVLPKEHLTKSI---------- 224

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
                      + G + R+  + +   +IT        G   HP  +R LTVRE AR Q F
Sbjct: 225  ----------YSGTWTRMK-KDDISVTITTRFDTPSSGKFTHPFLNRALTVREAARIQSF 273

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            PD + F GS   + RQ+GNAVPP LA A+ R +K  +
Sbjct: 274  PDEFIFIGSKSSQMRQVGNAVPPLLASAIARVIKNDI 310


>gi|385227820|ref|YP_005787753.1| cytosine specific DNA methyltransferase [Helicobacter pylori Puno120]
 gi|344334258|gb|AEN14702.1| cytosine specific DNA methyltransferase [Helicobacter pylori Puno120]
          Length = 355

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 182/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDS 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +   F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKLEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ + S+ N      
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLESSQN------ 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   +E  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSEAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|188526860|ref|YP_001909547.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi470]
 gi|188143100|gb|ACD47517.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            Shi470]
          Length = 355

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH              +  M  
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNH--------------KNAMGI 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKEKLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420451207|ref|ZP_14950061.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-45]
 gi|393065139|gb|EJB65969.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-45]
          Length = 355

 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 183/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDTYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420429703|ref|ZP_14928733.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-20]
 gi|393048322|gb|EJB49289.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-20]
          Length = 361

 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL           ++Y++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLGYLKEFDALIGLDYDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420419205|ref|ZP_14918295.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4076]
 gi|393031111|gb|EJB32183.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4076]
          Length = 355

 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 183/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420420796|ref|ZP_14919880.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4161]
 gi|393035595|gb|EJB36639.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4161]
          Length = 355

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 180/425 (42%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+      T   ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDTLIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|242065598|ref|XP_002454088.1| hypothetical protein SORBIDRAFT_04g024430 [Sorghum bicolor]
 gi|241933919|gb|EES07064.1| hypothetical protein SORBIDRAFT_04g024430 [Sorghum bicolor]
          Length = 770

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 128/267 (47%), Gaps = 35/267 (13%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF          + + ++ F+    Y +P+Y L+ENV
Sbjct: 509  LPLPGDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 568

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   +  L+ L+ M YQ R G++ AG +G+ Q R R F+W A     LP++P
Sbjct: 569  VDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYP 628

Query: 1329 EPMHVF----AAPEL---KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS 1381
             P +       AP      I+  D  +  +++        +A+ + D I DLP V N   
Sbjct: 629  LPTYDVVVRGGAPNAFSQCIVAYDETEKPSLK--------KALLLGDAISDLPKVENHQP 680

Query: 1382 KTIMEYQNDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKI 1425
              +MEY   P + FQ+ IR                 +   L DH    +N  +  R Q+I
Sbjct: 681  NDVMEYGGSPKTEFQRYIRLGRKDMLDWSFGEEAGPDEGKLLDHQPLRLNNDDYERVQQI 740

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLI 1452
            P + GA++ DL  + VK+    +V  I
Sbjct: 741  PVKKGANFRDL--KGVKVGANNIVSGI 765



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 26/180 (14%)

Query: 1000 FFRPDDISAEK-------AYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPA 1052
            FFR +D             +  D R V+ SEE +   ++ I  K ++ + +  P  +  A
Sbjct: 232  FFRAEDTVINSLVSINVDGHMHDPRRVFLSEEKNDNVLDCIISKVKIVRVD--PNIDPKA 289

Query: 1053 IFQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQ 1112
              Q I  C+  +D S        A+I     +G   SE AS         G  + +V+ +
Sbjct: 290  KAQLIEHCDLYYDMSYSVAYSTFANIS--SENGQSGSETAS---------GISDGDVDLE 338

Query: 1113 GGASQENHLATL-DIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
              +S     ATL D+++GCGG+S GL      SG+   T+WA++    A ++ K NHP++
Sbjct: 339  TSSSMPERTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQT 398


>gi|108562472|ref|YP_626788.1| cytosine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107836245|gb|ABF84114.1| cytosine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 355

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 179/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIKLAKKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                  + K++                 P ++
Sbjct: 158  YGVPQNRERAFIVGASRFSF--------------DFKLL----------------EPSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNHIQSSYQALMRKNSPKLYNHKATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +G L+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGHLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420461335|ref|ZP_14960126.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-3]
 gi|393081851|gb|EJB82569.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-3]
          Length = 355

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 177/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH              +  M  
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNH--------------KNAMGV 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAAIKEKVIKLAQKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V++ I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQEAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|425791505|ref|YP_007019422.1| cytosine specific DNA methyltransferase [Helicobacter pylori
            Aklavik86]
 gi|425629820|gb|AFX90360.1| cytosine specific DNA methyltransferase [Helicobacter pylori
            Aklavik86]
          Length = 355

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 183/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+     +    ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFNALIGLDCDKQALITFENNHKNAIGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|372269857|ref|ZP_09505905.1| DNA (cytosine-5-)-methyltransferase [Marinobacterium stanieri S30]
          Length = 427

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 185/442 (41%), Gaps = 78/442 (17%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML---INNCNV 1175
            N    + +F G GG S G +Q+G     +A + +  A + +K N P+++     INN + 
Sbjct: 2    NKPTAISLFCGAGGCSLGFKQAGYE-ILYANDKDSAAIDTYKRNFPDAVCSNEDINNLD- 59

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                V++  G A                          PG++D + GGPPCQGFS     
Sbjct: 60   -FNKVLKGIGAA--------------------------PGELDILIGGPPCQGFSTAG-- 90

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
                W   +  ++ +++   +  +P++F++ENV   ++ NKG+       + +E+GY +R
Sbjct: 91   -TKFWDDPRNHLLRSYVKALEVVRPKWFIMENVEGLLTSNKGKYIHEAAKAFIEIGYFIR 149

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
               + +  +GV Q RKR  I                           L  NY+       
Sbjct: 150  IEKVYSQEYGVPQRRKRVLIVGNR-----------------------LGHNYKLPEATIR 186

Query: 1356 ANGAPFRA--MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
             +G  FR   +T+   I  LP      S ++          F   +RGN   +TDH    
Sbjct: 187  VSGQIFRNSDITISHAIDTLPVAAKSKSVSVTPITEPVRDKFDLILRGNAVEITDHYCPL 246

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKV-----KLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
            +  + L R   +  +PG    DLPD        K +  +V D +P     T KR     G
Sbjct: 247  IKGIQLERISAL--KPGQTMKDLPDHLQHESFKKRANRRVADGMP-----TEKRGGAPSG 299

Query: 1469 LFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            L   ++ E +   +IT       +    HP ++R LT+RE AR Q FPD + F G+   K
Sbjct: 300  LKRLIENEPSL--TITG----AAIRELIHPTENRPLTIREAARIQTFPDDFIFCGTASQK 353

Query: 1529 HRQIGNAVPPTLAFALGRKLKE 1550
             +QIGNA+PP LA      +++
Sbjct: 354  IQQIGNAIPPMLARIFAEHIRD 375


>gi|425441645|ref|ZP_18821915.1| Cytosine specific DNA methyltransferase (modular protein)
            [Microcystis aeruginosa PCC 9717]
 gi|389717574|emb|CCH98349.1| Cytosine specific DNA methyltransferase (modular protein)
            [Microcystis aeruginosa PCC 9717]
          Length = 381

 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 194/442 (43%), Gaps = 79/442 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGL+ G   +G  S   AI+    A   ++ N+P++           R   E 
Sbjct: 6    IDLFSGAGGLTTGFHLAGFESI-CAIDVNAKALATYQHNYPKT-----------RTFQED 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS-----GMNRFNQS 1238
                   V+ SE   L   L    +  L          GGPPCQGFS     G    N S
Sbjct: 54   IRK----VNPSEL-RLYLGLQREELTAL---------IGGPPCQGFSRNIPAGYRYLNDS 99

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 +  +  +FL F   F+P + ++ENV   +    G      +A L   GYQV    
Sbjct: 100  -----RNHLYKSFLGFVQEFRPLHVVMENVPEILKAYNGIIRDEIVAHLESWGYQVVTTS 154

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS---- 1354
            L A  +GV Q+R RAF  A+   + LP  P+  H   + +++   SD   Y AV+S    
Sbjct: 155  LNAAYYGVPQTRSRAFFLASL--ERLPSLPQATH---SGDIR---SD---YKAVKSWTQL 203

Query: 1355 ---TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                 N AP    TV+D I DLP +  G +     Y  +P + +Q+++R     + +HI+
Sbjct: 204  TLLEPNIAP--VTTVKDAISDLPTLEAGQAYDHEIYTREPETIYQQKMREQSQKIVNHIA 261

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            + +  + + R Q + +  G D  DLP E           L P       K+H  + G +G
Sbjct: 262  RALTPIQMSRVQILAE--GQDARDLPAE-----------LAP-------KKH--YSGAYG 299

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+    T IT        G  FHP Q+R +T+RE AR   +PD + F G+      Q
Sbjct: 300  RLSWDKPART-ITRWFFHPGSGRFFHPTQNRTITIREAARLHSYPDHFHFLGTYTDMASQ 358

Query: 1532 IGNAVPPTLAFALGRKLKEAVE 1553
            IG +VPP L   +   + + +E
Sbjct: 359  IGESVPPLLGKVVADSMGQNLE 380


>gi|425788683|ref|YP_007016603.1| cytosine specific DNA methyltransferase [Helicobacter pylori
            Aklavik117]
 gi|425626998|gb|AFX90466.1| cytosine specific DNA methyltransferase [Helicobacter pylori
            Aklavik117]
          Length = 355

 Score =  140 bits (354), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 182/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLECLKEFDALIGLDCDKQALITFENNHKNAIGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|182677759|ref|YP_001831905.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182633642|gb|ACB94416.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 488

 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 204/455 (44%), Gaps = 52/455 (11%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            ++F G GGLS G    G    K+A +    A   F +N   +    +  +     ++   
Sbjct: 38   EVFCGIGGLSRGFHSLGFEP-KFANDVWPLALYNFLMNFDATYAATSGTH--HGDILGLV 94

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
            G  ED   +    ++++S  E  +      G++D + GGPPCQGFS +N   +S     +
Sbjct: 95   GSVEDISISDILPKISSSSGEGSLKV----GEIDVLLGGPPCQGFS-LNSHVRSVQDP-R 148

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR-----LTLASLLEM-GYQVRFGI 1298
              +   ++       P+ F+LENV   +S   G  F      ++L++ ++  GY+VRF I
Sbjct: 149  NYLFRHYVRLLKGLSPKIFVLENVPGMLSLEGGHFFEEFLREVSLSTTVDCPGYEVRFKI 208

Query: 1299 LEAGAFGVSQSRKRAFIWA----ASPHDTLPEWPEPMHV-FAAPELKIMLSDNYQYSAVR 1353
            L A  +GV Q R R  +       +    +   P P H   A    K   +  + Y+  R
Sbjct: 209  LNAAHYGVPQERFRVVVVGTRKDVADRAGVVSLPIPHHFSLAQAHFKGGRTHTFHYAIGR 268

Query: 1354 STANGA-----------PFRAMTVRDTIGDLPAVGNGASKTIMEY---QNDP-VSWFQKR 1398
                             PF  +TV D IGDLP + NG  + +  Y   ++ P +S +Q+ 
Sbjct: 269  GKHPSTDQISHIGPQLEPF--VTVIDAIGDLPKLTNGGGENVGRYGYNKDAPQLSKYQQN 326

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +  +L +H  + +   N  R + IP   G DW  +P            DL+P  +  
Sbjct: 327  MRSDGELLANHWCRALYPPNTERIKHIPA--GGDWRSIPR-----------DLLPPGMQR 373

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
              ++ +  +  +GRL       T +T P P     + +   Q R+++VRE AR Q FPD 
Sbjct: 374  ALRKDHTKR--YGRLSPTQLAGTLLTKPDPHWGTFIHYDLAQQRLISVREAARIQSFPDR 431

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            + F+G    ++R  GNAVPP +A A+ +++K  ++
Sbjct: 432  HVFYGGQVDQYRLCGNAVPPLMAQAIAKQVKGVLD 466


>gi|384892053|ref|YP_005766146.1| cytosine specific DNA methyltransferase [Helicobacter pylori Cuz20]
 gi|308061350|gb|ADO03238.1| cytosine specific DNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 355

 Score =  140 bits (353), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 182/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFDALIGLDCDKQALITFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTL------------KINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKEKLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|386749158|ref|YP_006222365.1| cytosine specific DNA methyltransferase [Helicobacter cetorum MIT
            00-7128]
 gi|384555401|gb|AFI03735.1| cytosine specific DNA methyltransferase [Helicobacter cetorum MIT
            00-7128]
          Length = 355

 Score =  140 bits (353), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 174/416 (41%), Gaps = 81/416 (19%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             LD+F G GG S GL+      T   +++++ A   F+ NH  ++ +             
Sbjct: 5    VLDLFCGAGGFSTGLEHLKEFKTLIGLDFDKQALMTFENNHKNAIGV------------- 51

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             CGD  +    S+  + A +L            +++ I GGPPCQGFS  N+        
Sbjct: 52   -CGDITEQEIKSQVIQHAKNL------------KINMIIGGPPCQGFS--NKGKNLGLKD 96

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  + L ++      +P+ F++ENV+N +S  KG   +        +GYQ+ + IL A 
Sbjct: 97   PRNFLFLEYIDIVKAIKPQIFIIENVKNLISCAKGYFLKEIKEKFNILGYQLSYHILNAR 156

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +GV QSR+RAFI  A                           N+ ++ +       P +
Sbjct: 157  DYGVPQSRERAFIVGARYF------------------------NFDFNLLE------PLQ 186

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
             ++V++ I DL  + +       +Y     S +Q  +R N   L +H +   +E+ L + 
Sbjct: 187  IVSVKEAISDLAYLNSNEGAFESDYSKPIQSTYQALMRKNSNKLYNHKATNHSEIALEKL 246

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
            + IP   G +                      CLP       Q+K  +GRL W+   PT 
Sbjct: 247  KLIPNEQGKE----------------------CLPKNLHGKQQFKSTWGRLSWDKVSPT- 283

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            I         G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP
Sbjct: 284  IDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSICKQIGNAVPP 339


>gi|390441689|ref|ZP_10229729.1| Cytosine specific DNA methyltransferase (modular protein)
            [Microcystis sp. T1-4]
 gi|389835002|emb|CCI33855.1| Cytosine specific DNA methyltransferase (modular protein)
            [Microcystis sp. T1-4]
          Length = 381

 Score =  140 bits (353), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 194/442 (43%), Gaps = 79/442 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGL+ G   +G  S   AI+    A   ++ N+P++           R   E 
Sbjct: 6    IDLFSGAGGLTTGFHLAGFESI-CAIDVNAKALATYQHNYPKT-----------RTFQED 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS-----GMNRFNQS 1238
                   V+ SE   L   L    +  L          GGPPCQGFS     G    N S
Sbjct: 54   IRK----VNPSEL-RLYLGLQREELTAL---------IGGPPCQGFSRNIPAGYRYLNDS 99

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 +  +  +FL F   F+P + ++ENV   +    G      +A L   GYQV    
Sbjct: 100  -----RNHLYKSFLGFVQEFRPLHVVMENVPEILKAYGGIIRDEIVAHLESWGYQVVTTS 154

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS---- 1354
            L A  +GV Q+R RAF  A+   + LP  P+  H   + +++   SD   Y AV+S    
Sbjct: 155  LNAAYYGVPQTRSRAFFLASL--ERLPSLPQATH---SGDIR---SD---YKAVKSWTQL 203

Query: 1355 ---TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                 N AP    TV+D I DLP +  G +     Y  +P + +Q+++R     + +HI+
Sbjct: 204  TVLEPNIAP--VTTVKDAISDLPTLEAGQAYDHEIYTREPETIYQQKMREQSQKIVNHIA 261

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            + +  + + R Q + +  G D  DLP E           L P       K+H  + G +G
Sbjct: 262  RALTPIQMSRVQILAE--GQDARDLPAE-----------LAP-------KKH--YSGAYG 299

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+    T IT        G  FHP Q+R +T+RE AR   +PD + F G+      Q
Sbjct: 300  RLSWDKPART-ITRWFFHPGSGRFFHPTQNRTITIREAARLHSYPDHFHFLGTYTDMASQ 358

Query: 1532 IGNAVPPTLAFALGRKLKEAVE 1553
            IG +VPP L   +   + + +E
Sbjct: 359  IGESVPPLLGKVVADSMGQNLE 380


>gi|420412917|ref|ZP_14912042.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4099]
 gi|393030678|gb|EJB31756.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4099]
          Length = 355

 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 182/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|384893666|ref|YP_005767715.1| cytosine specific DNA methyltransferase [Helicobacter pylori Sat464]
 gi|308062920|gb|ADO04807.1| cytosine specific DNA methyltransferase [Helicobacter pylori Sat464]
          Length = 355

 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 182/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNHKNAIGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VDVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420416221|ref|ZP_14915332.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4044]
 gi|393037667|gb|EJB38702.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4044]
          Length = 361

 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 177/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEVVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420437308|ref|ZP_14936292.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-28]
 gi|393053622|gb|EJB54566.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-28]
          Length = 348

 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 177/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q+R+R F+  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQTRERVFLVGA-----LKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP + +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPESLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
              
Sbjct: 339  AH 340


>gi|418630145|ref|ZP_13192633.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
            VCU127]
 gi|374831827|gb|EHR95553.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
            VCU127]
          Length = 329

 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 185/433 (42%), Gaps = 109/433 (25%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S G    G  +  +++EY+    + ++ N P  +++              
Sbjct: 6    IDLFSGAGGMSLGFDLEGFKNV-FSVEYDRQTAQTYRYNFPNHVLI-------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                       +  E++ +  + +INN      VD I GGPPCQGFS   +F ++     
Sbjct: 51   ---------NKDIQEISTNEIKKIINN----NTVDVIIGGPPCQGFSLAGKFGRTFIDDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + ++   +L F    +P+ F++ENV   VS NKG+T R    S+ ++GYQV++ IL+   
Sbjct: 98   RNQLFKEYLRFVSILKPKIFIIENVARLVSHNKGKTIREIQDSIKKLGYQVKYEILQTSD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            + + Q R+R FI      +    +PE +                              R 
Sbjct: 158  YNIPQKRQRVFIVGYKNIEF--NYPEKLK-----------------------------RK 186

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +T+++ I DLP + +G    I                       +H + + ++  L +  
Sbjct: 187  VTIKEAISDLPPLNSGEKSKI----------------------PNHFAMKHSQEMLYKMS 224

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I    G +   +P+E ++  +G             A+++ ++K        E + P + 
Sbjct: 225  FISD--GGNRLQIPEE-IRPKSGD------------ARKYIKYKS------DEPSIPVT- 262

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                  G +   FH  Q+R LT RE AR Q FPD + F G+  +  +QIGNAVPP LA  
Sbjct: 263  ------GDMRKVFHYSQNRALTSRELARIQTFPDDFIFKGTSINVQQQIGNAVPPKLAKL 316

Query: 1544 LGRKLKEAVESKR 1556
            +  ++  A+   R
Sbjct: 317  IAYQVNLALSEGR 329


>gi|17225496|gb|AAL37432.1|AF328909_1 putative cytosine-specific DNA methyltransferase [Helicobacter
            pylori]
 gi|17225522|gb|AAL37451.1|AF328916_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL           ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLGYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|23428398|gb|AAL15430.1| DNA methyltransferase A [Moraxella nonliquefaciens]
          Length = 351

 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 181/441 (41%), Gaps = 98/441 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  LD+F G GGLS G +Q+G ++    +++ E A + ++ NH  S +L           
Sbjct: 1    MNILDLFCGAGGLSYGFEQAGFNAV-LGVDFNEKALDTYQKNHKNSQIL----------- 48

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS------GMNR 1234
               CGD   C    E  ++A +      NN      V  + GGPPCQGFS      GMN 
Sbjct: 49   ---CGDLTSCELKDEIVKIAKT------NN------VRAVLGGPPCQGFSLKGKKLGMND 93

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT--LASLLEMGY 1292
                 + +        +L       P + ++ENV+     NK   + LT  L  L  MGY
Sbjct: 94   SRNFLFQE--------YLEIVRQVNPDFIVMENVKALT--NKTNEYFLTQILTGLKSMGY 143

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
             V + +L A  +GV QSR+R FI A                          +  + + A+
Sbjct: 144  FVNYQVLNAKDYGVPQSRERIFIIATK------------------------NQPFDFDAI 179

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                  A    +TV   I DL  + +G    +  Y N P S +Q+++R N ++L +H + 
Sbjct: 180  ------AKQPKVTVEQAISDLNFLESGEGDFLQTYPNKPQSHYQQQMRQNSSLLYNHQAT 233

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
              + + L +   IP  P  D   LP                       K   ++   +GR
Sbjct: 234  NHSSVALQKLAMIP--PEGDKTSLPAH--------------------LKGRQKFDTTWGR 271

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT  T        G   HP   R +T RE AR Q FPD + F+G      +QI
Sbjct: 272  LKWQSVSPTIDTRFDTPSN-GCNSHPTLHRAITPREAARLQSFPDDFVFYGKKTEICKQI 330

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAVPP LA  +   +K  + 
Sbjct: 331  GNAVPPRLAHQIALAIKNLLN 351


>gi|387782130|ref|YP_005792843.1| type II m5C methylase [Helicobacter pylori 51]
 gi|261837889|gb|ACX97655.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 348

 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 179/423 (42%), Gaps = 89/423 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + +  A  +++ NH E+  ++  C+++        
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDNDAILSYQANHKETQTIL--CDIM-------- 55

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                DC                  +NLP    +D + GGPPCQ +S + +         +
Sbjct: 56   --QLDC------------------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA- 1363
            GV Q R+R  +       TL  + +  H                           P +A 
Sbjct: 151  GVPQIRERVILVG-----TLKSFKQKFHF------------------------PKPIKAH 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +                  L  GQ  D     LP + +  + +   + ++ WE   PT I
Sbjct: 240  QT-----------------LKDGQSKD----DLPESLRPKSGYTNTYAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSSSAKRLQIGNAVPPLLSVA 337

Query: 1544 LGR 1546
            L +
Sbjct: 338  LAQ 340


>gi|296814932|ref|XP_002847803.1| DNA methyltransferase Dim-2 [Arthroderma otae CBS 113480]
 gi|238840828|gb|EEQ30490.1| DNA methyltransferase Dim-2 [Arthroderma otae CBS 113480]
          Length = 1099

 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 185/443 (41%), Gaps = 69/443 (15%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L++F+G G    GL++     +KWA+E+  P    ++ NHP             + +
Sbjct: 639  LKALNLFSGGGTFDRGLEEGTAIQSKWAVEWSLPQMLTYRANHPNG-----------KDL 687

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
               CG   D         L  ++  N    +   G+V  I+ G PCQG+   N + ++  
Sbjct: 688  KLFCGSVND--------YLFQAIQGNENEYIARIGEVQIISAGSPCQGYCSANFYRENEV 739

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT-FRLTLASLLEMGYQVRFGIL 1299
            S     MI +  S+ D+++P+Y +LENV    S    Q+     L + + MGYQ R   L
Sbjct: 740  SMRNSSMIASVASYIDFYRPQYAILENVTGMASRTHEQSPLSQLLCTFVGMGYQARVFNL 799

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            +A +FG  QSR R FI  A+P          +H+   P L     D  +  A+    NG 
Sbjct: 800  DAWSFGSPQSRSRLFIAIAAPG---------LHMLNHPPLTHSHPDWTKARALGDAPNGL 850

Query: 1360 P----------FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
                       F  ++  +   DLP +    +  IM      + W   R           
Sbjct: 851  TFGDRRWDTPIFDFVSAHEATKDLPPID---TARIMS-----IPWPDHR----------- 891

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
             S+  +E      Q IPK P          + +   G +      C  ++A+    +   
Sbjct: 892  PSRVESEAKQALIQNIPKAP----------RTQGLVGALARGWVNCADHSARLRTPYSKA 941

Query: 1470 FGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            + R+  E  FPT  T   P  K  G   H  +DR++TV+E  R+QG+PDS    GS   +
Sbjct: 942  WSRVHPEKLFPTVTTSVCPFCKFTGRWLHWQEDRLITVQEVRRAQGYPDSEVLIGSAAQQ 1001

Query: 1529 HRQIGNAVPPTLAFALGRKLKEA 1551
             + +GN+V   +A ALG  ++EA
Sbjct: 1002 WKIVGNSVARQIALALGLAVREA 1024


>gi|171472516|dbj|BAG15984.1| DNA methyltransferase 1 [Meriones unguiculatus]
          Length = 196

 Score =  139 bits (351), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 103/153 (67%), Gaps = 5/153 (3%)

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRSTANG 1358
            AG +GV+Q+R+RA I AA+P + LP +PEP+HVFA  A +L +++ D    S +   ++G
Sbjct: 1    AGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSG 60

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLTDHISKEMNE 1416
             PFR +TVRDT+ DLP + NGAS   + Y  +P SWFQ+++RG+    +L DHI K+M+ 
Sbjct: 61   -PFRTITVRDTMSDLPEIQNGASAPEISYNGEPQSWFQRQLRGSHYQPILRDHICKDMSP 119

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            L   R + IP  PG+DW DLP+ +V+L+ G + 
Sbjct: 120  LVAARMRHIPLFPGSDWRDLPNIEVRLTDGTLT 152


>gi|420426239|ref|ZP_14925295.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-9]
 gi|393044959|gb|EJB45949.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-9]
          Length = 355

 Score =  139 bits (351), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP   R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPKLHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420396777|ref|ZP_14895995.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1313]
 gi|393012439|gb|EJB13617.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1313]
          Length = 361

 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 183/431 (42%), Gaps = 81/431 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASHF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAVES 1554
            LG+ + +++++
Sbjct: 345  LGKAILKSLKN 355


>gi|308183851|ref|YP_003927984.1| cytosine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308059771|gb|ADO01667.1| cytosine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 355

 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEVVKAIKPEIFIIENVKNLISCTKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGAFESDYLNPIQSNYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|386750489|ref|YP_006223709.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi417]
 gi|384556747|gb|AFH97215.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi417]
          Length = 355

 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNHKNAIGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKEKLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA  
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALV 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|15644682|ref|NP_206852.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            26695]
 gi|410023283|ref|YP_006892536.1| cytosine specific DNA methyltransferase [Helicobacter pylori Rif1]
 gi|410501052|ref|YP_006935579.1| cytosine specific DNA methyltransferase [Helicobacter pylori Rif2]
 gi|410681569|ref|YP_006933971.1| cytosine specific DNA methyltransferase [Helicobacter pylori 26695]
 gi|419416152|ref|ZP_13956734.1| cytosine specific DNA methyltransferase [Helicobacter pylori P79]
 gi|2313124|gb|AAD07117.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            26695]
 gi|384375626|gb|EIE30896.1| cytosine specific DNA methyltransferase [Helicobacter pylori P79]
 gi|409893210|gb|AFV41268.1| cytosine specific DNA methyltransferase [Helicobacter pylori 26695]
 gi|409894940|gb|AFV42862.1| cytosine specific DNA methyltransferase [Helicobacter pylori Rif1]
 gi|409896603|gb|AFV44457.1| cytosine specific DNA methyltransferase [Helicobacter pylori Rif2]
          Length = 355

 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 181/429 (42%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIKLAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|419588920|ref|ZP_14124735.1| DNA-cytosine methyltransferase [Campylobacter coli 317/04]
 gi|380569022|gb|EIA91476.1| DNA-cytosine methyltransferase [Campylobacter coli 317/04]
          Length = 418

 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 199/462 (43%), Gaps = 75/462 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSG------ISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            +  LD+F+G GGLSEG  ++       I S K+A E  +     +KL         NN N
Sbjct: 1    MVVLDLFSGAGGLSEGFFRANSTFVAHIESDKYACETLKTRTSYWKLKKN------NNLN 54

Query: 1175 VILRAVMEKCGDAE--DCVSTSEAAELAA---------SLDENVINNL--PLPGQVDFIN 1221
            +    +++K    +  +  +TS++ E+           SL   + NNL   L   +D I 
Sbjct: 55   IYYDYLLKKITKEQLWELTNTSDSEEVICKEISEHNFDSLVSKIKNNLKKTLSKNIDVII 114

Query: 1222 GGPPCQGFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            GGPPCQ +S  G  R   S  +  +  +   ++ F + F+P+ F+ ENV    S   G+ 
Sbjct: 115  GGPPCQAYSIIGRARMKNSIENDHRNYLYKYYVKFLNIFKPKIFVFENVPGIKSAGNGKY 174

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
            F     S+ ++GY ++   L A  FGV Q+RKR  I                        
Sbjct: 175  FDDLKKSIEDIGYSIQIKELIASDFGVLQNRKRIIIVG---------------------F 213

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS-KTIMEYQNDPVSWFQ-K 1397
            KI  +  Y Y       N   F    V+D + DLP +  G   + + +Y     S+ +  
Sbjct: 214  KIKKNKKYSYPIFEKIENKNYF----VKDVLSDLPKINPGEKIEGLNKYTKKTNSYLKMA 269

Query: 1398 RIR-GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHD----LPDEKVKLSTGQVVDLI 1452
             IR  N  +LT H ++  N+    R ++I K     W+     L  +K+ L+  +++   
Sbjct: 270  NIRDANFNILTQHETRPHND----RDREIYKEAILAWNTKRERLCYKKLALTRPELI--- 322

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPD--QDRILTVRECA 1510
                  + K  N +   F  +    N   +I     M       HPD  Q R L++RE A
Sbjct: 323  ------SHKNTNSFTNRFNVIKENTNASHTILAHMAMDG-HYYIHPDITQLRSLSIREAA 375

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            R Q FPD + F G      RQIGNAVPP +A  + +K+KE +
Sbjct: 376  RLQSFPDDFYFEGPRTSIFRQIGNAVPPKMAEQIAKKIKELI 417


>gi|420448068|ref|ZP_14946952.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-44]
 gi|393066881|gb|EJB67699.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-44]
          Length = 355

 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 180/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGSFESDYLNPIQSNYQALMRKDSPKLYNHQATNHSQAALKKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420464739|ref|ZP_14963506.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-6]
 gi|393082226|gb|EJB82942.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-6]
          Length = 361

 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 177/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH              +  M  
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNH--------------KNAMGV 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L            +V+ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAAIKEKVIKLAQTL------------EVNMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|421713626|ref|ZP_16152957.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R32b]
 gi|407216992|gb|EKE86829.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R32b]
          Length = 355

 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 180/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAKKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ +  L A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQTLNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420500502|ref|ZP_14999048.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-30]
 gi|393152269|gb|EJC52570.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-30]
          Length = 355

 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 180/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAAIKEKVIKLAQKLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQV +  L A  
Sbjct: 98   RNFLFLEYIEIVGAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQVSYQTLNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGTFESDYLNPVQSNYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420501970|ref|ZP_15000511.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-41]
 gi|393153250|gb|EJC53543.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-41]
          Length = 355

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 179/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL           ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLGYLKEFDALIGLDCDKQALITFENNHKNAISV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGSFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LIDKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|449085225|gb|AGE84599.1| cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 356

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 180/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I G PPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAKKLE------------INMIIGRPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITSREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|251811836|ref|ZP_04826309.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|282875124|ref|ZP_06283997.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
            SK135]
 gi|417914581|ref|ZP_12558225.1| putative modification methylase HaeIII [Staphylococcus epidermidis
            VCU109]
 gi|421608173|ref|ZP_16049400.1| DNA-cytosine methyltransferase [Staphylococcus epidermidis AU12-03]
 gi|251804633|gb|EES57290.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|281295889|gb|EFA88410.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
            SK135]
 gi|341652137|gb|EGS75927.1| putative modification methylase HaeIII [Staphylococcus epidermidis
            VCU109]
 gi|406656171|gb|EKC82583.1| DNA-cytosine methyltransferase [Staphylococcus epidermidis AU12-03]
          Length = 329

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 189/433 (43%), Gaps = 109/433 (25%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S G    G  +  +++EY+    + ++ N P  +++              
Sbjct: 6    IDLFSGAGGMSLGFDLEGFKNV-FSVEYDLQTAQTYRYNFPNHVLI-------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                       +  E++ +  + +INN      VD I GGPPCQGFS   +F ++     
Sbjct: 51   ---------NKDIQEISTNEIKKIINN----NTVDVIIGGPPCQGFSLAGKFGRTFIDDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + ++   +L F    +P+ F++ENV   VS NKG+T R    S+ ++GY+V++ IL+   
Sbjct: 98   RNQLFKEYLRFVSILKPKIFIIENVARLVSHNKGKTIREIQESIEKLGYKVKYEILQTSD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            + + Q R+R FI      +    +PE +                              R 
Sbjct: 158  YNIPQKRQRVFIVGYKNIEF--NYPEKLK-----------------------------RK 186

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +T+++ I DLP + NG                + +I  + A+  +H  + + +++ I   
Sbjct: 187  VTIKEAISDLPPLKNGE---------------KSKIPNHFAM--NHSQEMLYKMSFI--- 226

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
                  G +   +P+E ++  +G             A+++ ++K        E + P + 
Sbjct: 227  ----SDGGNRLQIPEE-IRPKSGD------------ARKYIKYKS------DEPSIPVT- 262

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                  G +   FH  Q+R LT RE AR Q FPD + F G+  +  +QIGNAVPP LA  
Sbjct: 263  ------GDMRKVFHYSQNRALTSRELARIQTFPDDFIFKGTSINVQQQIGNAVPPKLAKL 316

Query: 1544 LGRKLKEAVESKR 1556
            +  ++  A+   R
Sbjct: 317  IAYQVNLALSEGR 329


>gi|420461148|ref|ZP_14959943.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-27]
 gi|393074722|gb|EJB75481.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-27]
          Length = 355

 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKERGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420399961|ref|ZP_14899165.1| cytosine-specific methyltransferase [Helicobacter pylori CPY3281]
 gi|393019502|gb|EJB20645.1| cytosine-specific methyltransferase [Helicobacter pylori CPY3281]
          Length = 351

 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 181/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQL- 57

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                DC                  +NLP    +D + GGPPCQ +S + +         +
Sbjct: 58   ----DC------------------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLQLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L+VRE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSVREGARLQSFPDNYKFCGSSSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|387907427|ref|YP_006337761.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            XZ274]
 gi|387572362|gb|AFJ81070.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter pylori
            XZ274]
          Length = 355

 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 179/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+      T   ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDTLIGLDCDKQALITFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L             ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLG------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQV + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQVSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAF+  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFVVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLSWNKVSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA  
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALV 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|387781756|ref|YP_005792469.1| cytosine-methyltransferase [Helicobacter pylori 51]
 gi|261837515|gb|ACX97281.1| cytosine-methyltransferase [Helicobacter pylori 51]
          Length = 355

 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 180/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLSWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|386586337|ref|YP_006082739.1| modification methylase HaeIII [Streptococcus suis D12]
 gi|353738483|gb|AER19491.1| modification methylase HaeIII [Streptococcus suis D12]
 gi|451939649|gb|AGF89780.1| C-5 cytosine-specific DNA methylase [Streptococcus phage phiD12]
          Length = 355

 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 183/419 (43%), Gaps = 86/419 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGLS G +Q+G S T  A E+++    ++  NHP + M++             
Sbjct: 6    IDLFSGVGGLSLGFEQAGFS-TIVANEFDKSIAYSYSKNHPFTKMIVG------------ 52

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                 D  S     E            L    +VD + GGPPCQG+S   + ++ T    
Sbjct: 53   -----DITSLELEKEF-----------LQYKNKVDVVVGGPPCQGYS--QKGSRKTIHDE 94

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE-MGYQVRFGILEAG 1302
            +  +   F+   +   P YF++ENV N ++  KG  F+  L +L E +GY +   I++A 
Sbjct: 95   RNFLFKYFVKVVELVSPNYFVMENVPNLLTAEKG-FFKQELITLFEELGYSLSMEIVDAS 153

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             FGV Q R+RA I       ++         F   E K                      
Sbjct: 154  KFGVPQRRRRAIILGKKGKKSV--------TFRLEEKK---------------------- 183

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
            ++T+ D I DL  + +G  +    Y     S +Q+ +R +  +L +H +   +++ L R 
Sbjct: 184  SVTIWDAISDLAFLESGDGEEEQNYLFPAQSNYQQELRSDSKILYNHKATNHSKIALERL 243

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
            + IP+  G D   LP+E +  S         W      +++ Q   +  R D     P+S
Sbjct: 244  KMIPENSGKD--SLPEEHLTKSIYSGT----W---ERMRKNEQSVTITTRFDT----PSS 290

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
                      G   HP  +R +TVRE AR Q FPDS+ F G    + +Q+GNAVPP LA
Sbjct: 291  ----------GKFTHPFLNRAITVREAARLQSFPDSFIFFGPKTSQMKQVGNAVPPKLA 339


>gi|156050777|ref|XP_001591350.1| hypothetical protein SS1G_07976 [Sclerotinia sclerotiorum 1980]
 gi|154692376|gb|EDN92114.1| hypothetical protein SS1G_07976 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1392

 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 195/447 (43%), Gaps = 60/447 (13%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESL-MLINNCNVIL 1177
            L  LD+F G G    GL++ G    KWA++    A + +  N   PE   M   + N +L
Sbjct: 653  LNGLDLFCGGGNFGRGLEEGGAVHNKWAVDLFSAAVQTYSTNLKDPEGTDMFFGSVNDLL 712

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                E  G+ +                      +P PG VD I  G PCQGFS MN    
Sbjct: 713  VQAFE--GNPQKF-------------------RIPSPGDVDVILAGSPCQGFSRMNMNKG 751

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQV 1294
            +  S     ++ +  ++ D+++P+Y LLENV        G+        + +++ +GYQV
Sbjct: 752  NDQSLRNQSLVASVAAYIDFYRPKYGLLENVLTMAQKGLGREEDILSQLICTIVGLGYQV 811

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPE-----PMHVFAAPELKIMLSDNYQY 1349
            +  +L++ +FG SQ+R R F+  A+P     + PE     P HV      K+    N Q 
Sbjct: 812  QLFLLDSWSFGSSQARSRIFVSFAAPGFVPLKHPELSHSHPPHVGERGLGKLA---NGQS 868

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
               R      PF  +T  D+I DLP +G+GA+    +Y                    DH
Sbjct: 869  FGSRIHC-PTPFNYLTAEDSIADLPYIGDGATSQCTKY-------------------PDH 908

Query: 1410 ISKE-MNELNLIRCQKIPKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            ++ + ++++   +   IP  P G ++    +    + T    ++ P+   +   R +   
Sbjct: 909  VTPQTLSKMYRFQVACIPTHPRGMNFSKTWNNGNGIMTKAERNIFPYFTKSGKVRESVTS 968

Query: 1468 G--LFGRLDWEGNFPTS-ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS 1524
                +GR+   G FPT  +T      ++G   H DQ R LT+ E  R+Q FPD     G+
Sbjct: 969  NSRAWGRVKPRGLFPTILVTINLEDSRMGNSLHWDQQRRLTIMELRRAQSFPDDEVLVGT 1028

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEA 1551
               + + IGN+V  +++ ALG  L  A
Sbjct: 1029 RGEQMKIIGNSVDRSVSMALGISLCNA 1055


>gi|386752472|ref|YP_006225691.1| type II DNA modification methyltransferase [Helicobacter pylori
            Shi169]
 gi|384558730|gb|AFH99197.1| type II DNA modification methyltransferase [Helicobacter pylori
            Shi169]
          Length = 348

 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 174/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L+VRE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSVREGARLQSFPDNYKFCGSTSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
              
Sbjct: 339  AH 340


>gi|384899614|ref|YP_005774994.1| cytosine specific DNA methyltransferase [Helicobacter pylori F30]
 gi|317179558|dbj|BAJ57346.1| cytosine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 355

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 180/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLSWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|420404923|ref|ZP_14904103.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6271]
 gi|393024793|gb|EJB25903.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6271]
          Length = 351

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 178/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R F+        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVFLVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSSSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|384887473|ref|YP_005761984.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori 52]
 gi|261839303|gb|ACX99068.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori 52]
          Length = 348

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 176/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKKT-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSSSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
             +
Sbjct: 339  AQ 340


>gi|339321213|ref|YP_004683735.1| adenine-specific DNA-methyltransferase [Mycoplasma bovis Hubei-1]
 gi|392430292|ref|YP_006471337.1| DNA methyltransferase [Mycoplasma bovis HB0801]
 gi|338227338|gb|AEI90400.1| adenine-specific DNA-methyltransferase [Mycoplasma bovis Hubei-1]
          Length = 593

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 185/430 (43%), Gaps = 86/430 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GG S GL       T  A ++ + A   FK N P++       ++IL      
Sbjct: 7    LDLFSGAGGFSYGLDSLEEFETLIATDFNKSALNTFKHNIPKA-------DIIL------ 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD    ++ SE  E       N  N L    +++ I GGPPCQGFS  N+  +      
Sbjct: 54   -GD----ITKSEVKEQII----NKANEL----KINMIIGGPPCQGFS--NKGKKQGLDDP 98

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L +L   +   P  F++ENV+  +   KG      +  +  MGY++ +G+L A  
Sbjct: 99   RNFLFLEYLDIVEKVSPELFIIENVKTMLIAVKGYFIDQIVEKIEMMGYKISYGVLNAKD 158

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FGV Q+R RA I                   A  E  I L         RS  N      
Sbjct: 159  FGVPQNRARAII------------------IAHKEKTISLP--------RSNGNRT---- 188

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             TV+D I DL  + +       +Y ++  S +QK++R     L +HI+ + N   + +  
Sbjct: 189  -TVKDAISDLAYLNSADGNYESQYISNAQSEYQKQMRKGSLRLFNHIATKHNADVIKKLN 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP   G ++  L +E                L    K +  W    GRL W+   PT  
Sbjct: 248  LIPAECGKEY--LSEE----------------LKGKQKFNTTW----GRLKWDSTSPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+ +R +T RE AR Q FPD + F GS     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNTHPELNRAITPREAARLQSFPDKFIFTGSKTEICKQIGNAVPPLLAKA 344

Query: 1544 LG----RKLK 1549
            +G    R+LK
Sbjct: 345  IGLEILRQLK 354


>gi|420413430|ref|ZP_14912554.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4099]
 gi|393029417|gb|EJB30498.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4099]
          Length = 351

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 190/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSAQPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQIRERVILVGA-----LKRFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G +  DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQNKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|303236368|ref|ZP_07322958.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483426|gb|EFL46431.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 357

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 189/433 (43%), Gaps = 86/433 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F GCGGLS+G +++G   T   ++ E+ A   F+ NH  ++ L              
Sbjct: 10   IDLFCGCGGLSKGFEEAGY-KTLLGVDIEQNALNTFEKNHNGAVGL-------------- 54

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                          +L+AS   + I+ +     +D I GGPPCQGFS     N   +   
Sbjct: 55   ------------NLDLSASESFDKIDEVVKGRAIDVIIGGPPCQGFSLTGPRN---FEDK 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + ++ LA +     +QP+ FL+ENV    +  KG      +     MGY V   I+ A  
Sbjct: 100  RNKLYLAMIETVHRYQPKAFLIENVPGMANLYKGAVKDEIIRRFTAMGYNVSCQIVCAAD 159

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q RKR        +    E+PEP+          +  + Y                
Sbjct: 160  YGVPQIRKRLVFVGLKNNKEKFEFPEPL----------LKEEAY---------------- 193

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +T +  I DLP + +     +  Y  +P + +Q+++R N  VL +H++  +N  + ++ Q
Sbjct: 194  ITCKQAISDLPPLVDELGSEVSTYCEEPETEYQRKMRKNCDVLYNHVA--VNHKDFVK-Q 250

Query: 1424 KIPKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
             I + P G ++ DLP+                 +  +   H  W        +  N P+ 
Sbjct: 251  VISQVPDGGNYKDLPEG----------------VGTSRNFHMAWT------RYASNKPSR 288

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
              D          FH   +R  TVRE AR Q FPD + F G+   +++Q+GNAVP  LA+
Sbjct: 289  TIDTGHRNN----FHYKWNRCPTVRESARLQSFPDDFVFTGNKTQQNKQVGNAVPVLLAY 344

Query: 1543 ALGRKLKEAVESK 1555
            AL +++ + ++++
Sbjct: 345  ALAKQILKYLDNE 357


>gi|396578258|gb|AFM52076.2| DNA methyltransferase [Mycoplasma bovis HB0801]
          Length = 594

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 185/430 (43%), Gaps = 86/430 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GG S GL       T  A ++ + A   FK N P++       ++IL      
Sbjct: 8    LDLFSGAGGFSYGLDSLEEFETLIATDFNKSALNTFKHNIPKA-------DIIL------ 54

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD    ++ SE  E       N  N L    +++ I GGPPCQGFS  N+  +      
Sbjct: 55   -GD----ITKSEVKEQII----NKANEL----KINMIIGGPPCQGFS--NKGKKQGLDDP 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L +L   +   P  F++ENV+  +   KG      +  +  MGY++ +G+L A  
Sbjct: 100  RNFLFLEYLDIVEKVSPELFIIENVKTMLIAVKGYFIDQIVEKIEMMGYKISYGVLNAKD 159

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FGV Q+R RA I                   A  E  I L         RS  N      
Sbjct: 160  FGVPQNRARAII------------------IAHKEKTISLP--------RSNGNRT---- 189

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             TV+D I DL  + +       +Y ++  S +QK++R     L +HI+ + N   + +  
Sbjct: 190  -TVKDAISDLAYLNSADGNYESQYISNAQSEYQKQMRKGSLRLFNHIATKHNADVIKKLN 248

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP   G ++  L +E                L    K +  W    GRL W+   PT  
Sbjct: 249  LIPAECGKEY--LSEE----------------LKGKQKFNTTW----GRLKWDSTSPTID 286

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+ +R +T RE AR Q FPD + F GS     +QIGNAVPP LA A
Sbjct: 287  TRFDTPSN-GTNTHPELNRAITPREAARLQSFPDKFIFTGSKTEICKQIGNAVPPLLAKA 345

Query: 1544 LG----RKLK 1549
            +G    R+LK
Sbjct: 346  IGLEILRQLK 355


>gi|420480059|ref|ZP_14978703.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1]
 gi|420510504|ref|ZP_15008994.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1b]
 gi|393097972|gb|EJB98564.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1]
 gi|393122245|gb|EJC22722.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1b]
          Length = 361

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL           ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLGYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGAFESDYLNPVQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420486671|ref|ZP_14985279.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-8]
 gi|420520558|ref|ZP_15018989.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-8b]
 gi|393104224|gb|EJC04781.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-8]
 gi|393127145|gb|EJC27590.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-8b]
          Length = 361

 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL++         ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLERLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420463026|ref|ZP_14961804.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-4]
 gi|393080554|gb|EJB81279.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-4]
          Length = 361

 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL           ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLGYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  ELA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|188527268|ref|YP_001909955.1| type II DNA modification methyltransferase [Helicobacter pylori
            Shi470]
 gi|188143508|gb|ACD47925.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Shi470]
          Length = 348

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 174/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYVLEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            +                 L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  M-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L+VRE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSVREGARLQSFPDNYKFCGSTSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
              
Sbjct: 339  AH 340


>gi|385216117|ref|YP_005776074.1| Type II DNA modification enzyme [Helicobacter pylori F32]
 gi|317180646|dbj|BAJ58432.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 348

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 177/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQ-- 56

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                DC                  +NLP    +D + GGPPCQ +S + +         +
Sbjct: 57   ---LDC------------------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
              
Sbjct: 339  AH 340


>gi|358385860|gb|EHK23456.1| hypothetical protein TRIVIDRAFT_349, partial [Trichoderma virens
            Gv29-8]
          Length = 1029

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 138/561 (24%), Positives = 226/561 (40%), Gaps = 95/561 (16%)

Query: 1018 EVYYSEETHLIFVEAIAGKCEVRKKND---IPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            E+ YSE+   +  + I G C VR   D   IP         ++F+  H    + G     
Sbjct: 532  ELVYSEQFCKVSRDQIMGPCSVRFFRDGDRIPTPYDRDGTGNLFYITHQQIVAGG----F 587

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLS 1134
              +  ++ +  SL+             +G D L+        Q   L  +D+F G G   
Sbjct: 588  SVYEPIKVAPTSLN-------------QGYDPLQ--------QLQKLRGIDLFCGGGNFG 626

Query: 1135 EGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194
             GL+  G    KWA +Y+  A   +  N                  + K GD    + + 
Sbjct: 627  RGLEDGGGIKMKWANDYDSKAIHTYMAN------------------VSKPGDVHPFLGSI 668

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
            +  +  A +     +N+P  G VDF++GG PC GFS +     +   +    ++ AF SF
Sbjct: 669  DDLQHFA-IRGQFADNVPRIGDVDFVSGGSPCPGFSILTNDKTTAAQRKNQSLVAAFASF 727

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
             D ++P+Y +LENV   +   + +    F   + SL+ +GYQ +F  L+A + G  Q R 
Sbjct: 728  VDLYRPKYGVLENVPGMIHKKESRDQDVFSQLICSLVGLGYQTQFFFLDASSCGSPQRRS 787

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAP--ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDT 1369
            R F+  A+P   LP+ P   H       EL I    N Q+ A R      PF+ ++  + 
Sbjct: 788  RIFVIFAAPGLELPKKPVQTHSHPPKTRELGIGWLPNGQHMATREMPAATPFKYISAEEA 847

Query: 1370 IGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE-MNELNLIRCQKIPKR 1428
              DLP + +      + Y                    DH S   + ++   R   IP R
Sbjct: 848  AADLPPIHDAKPDICVPY-------------------PDHRSTSGLTKMMRARISVIPVR 888

Query: 1429 P-----GADWHDLPDEKVKLSTGQVV----DLIPWC--------LPNTAKRHNQWKGLFG 1471
            P        W+   D K +  +G +     +L            LP + +  ++    +G
Sbjct: 889  PWGMSFAQAWYG--DNKAEGGSGTMTAAERELFTGTNGVRDTSKLPLSVQPQSR---AYG 943

Query: 1472 RLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            R+     F T  T P     K G   H  ++R++++ E  R+QGF D     G   +++R
Sbjct: 944  RMFPNKLFDTITTRPTTNDAKNGRLLHWRENRLISIMEARRAQGFRDEEVLLGDPVNQYR 1003

Query: 1531 QIGNAVPPTLAFALGRKLKEA 1551
             +GN+V   +A ALG   +EA
Sbjct: 1004 IVGNSVARQIAVALGVTFREA 1024


>gi|387907797|ref|YP_006338131.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori XZ274]
 gi|387572732|gb|AFJ81440.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori XZ274]
          Length = 352

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 181/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
             +   CVS                        +D + GGPPCQ +S + +         +
Sbjct: 60   HNLP-CVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV+Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVTQIRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G S   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGESGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKHLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420438503|ref|ZP_14937477.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-29]
 gi|393056103|gb|EJB57015.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-29]
          Length = 351

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 189/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQIRERVILVGA-----LKRFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|420455009|ref|ZP_14953839.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-14]
 gi|393073359|gb|EJB74133.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-14]
          Length = 348

 Score =  137 bits (345), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 178/423 (42%), Gaps = 89/423 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            GV Q R+R  +  A  H      +P+P+                                
Sbjct: 151  GVPQIRERVILVGALKHFKQKFHFPKPIKT-----------------------------H 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G +  DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQNKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGR 1546
            L +
Sbjct: 338  LAQ 340


>gi|255280633|ref|ZP_05345188.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
 gi|255269098|gb|EET62303.1| DNA (cytosine-5-)-methyltransferase [Marvinbryantia formatexigens DSM
            14469]
          Length = 378

 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 181/439 (41%), Gaps = 81/439 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L T+D+FAG GG++EG +++G      A + +E A   F  NHP    ++ +        
Sbjct: 2    LKTIDLFAGAGGITEGFRKAGYVCV-CANDIDEEAKHTFTYNHPTVPFVLKD-------- 52

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                      V    AAEL A+ +           ++D I GGPPCQGFS      Q   
Sbjct: 53   ----------VREVTAAELLAAANCTA-------AEIDVITGGPPCQGFSLAG---QRLS 92

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   ++  A   +PR    ENV   ++   G+  +  +    ++GYQ ++ ++ 
Sbjct: 93   DDPRNTLFREYVRIAADIRPRVLFFENVHGIMNMQNGRVLKAIVTEFEKIGYQCKYNLVN 152

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R R  +      D    +P+P H               + S   +      
Sbjct: 153  AADYGVPQARPRFVLIGIRGFDKKITFPQPTH------------GKNEESGQMNLFKREL 200

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG--NMAVLTDHISKEMNELN 1418
               +TV D   +LP V  G     M+ +N   + FQK+  G  N  V+ +H +   ++  
Sbjct: 201  LPYVTVNDAFSNLPVVNQGEGAEKMKMRNHYDNDFQKKCVGERNPGVIYNHRATRHSKAI 260

Query: 1419 LIRCQKIPKRPGADWHDLPDE-KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
              R   IP+  G +   LP E + K      +DL                 L GR     
Sbjct: 261  QERYAMIPQ--GCNNSILPPEIRTKKQNAYKLDL----------------SLPGR-TVTC 301

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR------Q 1531
            NF T +             HP  +R LTVRE AR Q F D Y F G++  K +      Q
Sbjct: 302  NFRTDL------------IHPVMNRGLTVREAARLQSFDDDYCFFGNLTRKAKWLTQDDQ 349

Query: 1532 IGNAVPPTLAFALGRKLKE 1550
            +GNAVPP LA+A  + +KE
Sbjct: 350  VGNAVPPLLAYAFAKHIKE 368


>gi|420465164|ref|ZP_14963931.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-6]
 gi|393082651|gb|EJB83367.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-6]
          Length = 351

 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 186/431 (43%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
             +   CVS                        +D + GGPPCQ +S + +         +
Sbjct: 60   HNLP-CVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ENLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420441830|ref|ZP_14940775.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-36]
 gi|393059959|gb|EJB60834.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-36]
          Length = 352

 Score =  137 bits (344), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 189/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G  +       WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSKHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +     H +  +                    + +S    T        
Sbjct: 150  YGVPQIRERVILVGI--HKSFKQ-------------------KFHFSKPIKTH------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKGLSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R+L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRVLSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|384894068|ref|YP_005768117.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Sat464]
 gi|308063322|gb|ADO05209.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Sat464]
          Length = 348

 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 173/422 (40%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  ++++NH E          IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQVNHKE-------VQTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYVLEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L+VRE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSVREGARLQSFPDNYKFCGSTSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
              
Sbjct: 339  AH 340


>gi|385266921|ref|ZP_10045008.1| DNA (cytosine-5-)-methyltransferase [Bacillus sp. 5B6]
 gi|385151417|gb|EIF15354.1| DNA (cytosine-5-)-methyltransferase [Bacillus sp. 5B6]
          Length = 377

 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 178/437 (40%), Gaps = 94/437 (21%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC--NV 1175
            E  L  LD+F GCGGLS+G   +G +     +++EE A + FK NH  S +L+ +   + 
Sbjct: 3    EKQLNVLDLFCGCGGLSQGFLDAGYN-VMLGVDFEEAALKTFKYNHETSDVLLADLSKDE 61

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMN 1233
             +  + +K GD                             +VD + GGPPCQGFS  G  
Sbjct: 62   AIEEIADKIGDQ----------------------------KVDIVIGGPPCQGFSLTGSR 93

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
              N +     +  + LA +     F+P+ FL+ENV    +   G   +  + +  +MGY 
Sbjct: 94   DINDT-----RNTLYLAVVKAVRRFKPKAFLIENVPGIATLYNGIVKQQIINTFEDMGYN 148

Query: 1294 VRFGI--LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSA 1351
            V      L A  +GV Q RKR F           E+PEP H                   
Sbjct: 149  VSVSPKPLLAADYGVPQMRKRMFFVGIEKGYGSFEFPEPTH------------------- 189

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                    P R +T  + I DLP+      + +  Y+  P S +Q+ +R N   L +H++
Sbjct: 190  -------TPERYVTCSEAISDLPSRDEEFGEEVDNYEKKPQSLYQEFMRQNSKKLHNHVA 242

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
                E       ++P+  G +  DLP                  + ++ K +  W     
Sbjct: 243  TNHTEHVKWVISQVPE--GGNHKDLPP----------------GIGDSRKFNEAWT---- 280

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
               +    P+   D          FH   +R+ TVRE AR Q F D + F G+   ++RQ
Sbjct: 281  --RYHSKKPSRTIDTGHRNH----FHYKYNRVPTVRENARLQSFRDDFVFIGTRTQQNRQ 334

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GNAVPP L+  L + +
Sbjct: 335  VGNAVPPLLSLNLAKAI 351


>gi|302497567|ref|XP_003010784.1| hypothetical protein ARB_03486 [Arthroderma benhamiae CBS 112371]
 gi|291174327|gb|EFE30144.1| hypothetical protein ARB_03486 [Arthroderma benhamiae CBS 112371]
          Length = 1085

 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 157/607 (25%), Positives = 235/607 (38%), Gaps = 105/607 (17%)

Query: 958  ETFKAGRNVGLKPYVVCQLLEIIVPKE-----PKRAEVKSTQVKVRRFFRPDDISAEKAY 1012
            +TFKAG  V      + Q   I+ P E     P  A ++  Q + R     +    E  +
Sbjct: 503  QTFKAGDTV------LAQFANILKPAEIINIGPDEATLRVFQYR-RELGEKNCRPNELVH 555

Query: 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLK 1072
            C D R V  S          I   C +R    +   N P        C +  D       
Sbjct: 556  CDDYRTVPISR---------IKRHCHIRVFKPVQLPNIP--------CPYNRD------- 591

Query: 1073 QLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG----GASQENHLATLDIFA 1128
                        G+ DS      K G+ +E  +     KQG     +S  + L  L++F+
Sbjct: 592  ------------GTGDSFYIIYAKNGENLEPMNSRPSFKQGFDPSASSSLHKLNALNLFS 639

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            G G    GL++ G   +KWA+E+       ++ NHP             + +   CG   
Sbjct: 640  GGGTFDRGLEEGGAIESKWAVEWGLHQMLTYRANHPNG-----------KGLKLFCGSVN 688

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
            D +        A +  EN+   +   G+  FI+ G PCQG+S  N   ++  S     MI
Sbjct: 689  DYLFQ------AITGKENIY--VARIGEAHFISAGSPCQGYSSANAHKENETSMRNSSMI 740

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQT-FRLTLASLLEMGYQVRFGILEAGAFGVS 1307
             +  S+ D ++P+Y +LENV    S    Q      L + + MGYQ R   L+A +FG  
Sbjct: 741  ASVASYIDLYRPQYAILENVAGMASRTHEQNPLSQLLCTFVGMGYQARVFNLDAWSFGAP 800

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP-FRAMTV 1366
            QSR R FI  A+P   + E P   H          L DN   S         P F  ++ 
Sbjct: 801  QSRSRLFIAIAAPGLHILEHPALTHSHPPGTKSRALGDNPNGSTFGERRWDTPVFEFVSA 860

Query: 1367 RDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM-NELNLIRCQKI 1425
            R    DLP +    +  IM      + W             DH S  + +E      Q I
Sbjct: 861  RSATQDLPPID---TARIMS-----IPW------------PDHRSSRVESEEKQALIQNI 900

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
            PK P          K +   G +       L ++A+        + R+  E  FP   T 
Sbjct: 901  PKYP----------KGQGLVGAIARGWVDPLEHSARMKAATSKAWSRIYPEKPFPAVTTG 950

Query: 1486 PQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
              P     G   H  +DR++TV+E  R+QG+PD+    GS   + + +GN+V   +A AL
Sbjct: 951  VCPFCIFTGRWLHWQEDRLVTVQEVRRAQGYPDNEVLIGSPVQQWKIVGNSVARQVALAL 1010

Query: 1545 GRKLKEA 1551
            G  ++EA
Sbjct: 1011 GLVVREA 1017


>gi|52788777|gb|AAU87368.1| MnlI m5C-methyltransferase [Moraxella nonliquefaciens]
          Length = 351

 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 180/441 (40%), Gaps = 98/441 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  LD+F G GGLS G +Q+G ++    +++ E A + ++ NH  S +L           
Sbjct: 1    MNILDLFCGAGGLSYGFEQAGFNAV-LGVDFNEKALDTYQKNHKNSQIL----------- 48

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS------GMNR 1234
               CGD   C    E  ++A +      NN      V  + GGPPCQGFS      GMN 
Sbjct: 49   ---CGDLTSCELKDEIVKIAKT------NN------VRAVLGGPPCQGFSLKGKKLGMND 93

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT--LASLLEMGY 1292
                 + +        +L       P + ++ENV+     NK   + LT  L  L  MGY
Sbjct: 94   SRNFLFQE--------YLEIVRQVNPDFIVMENVKALT--NKTNEYFLTQILTGLKSMGY 143

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
             V + +L A  +GV QSR+R FI A                          +  + + A+
Sbjct: 144  FVNYQVLNAKDYGVPQSRERIFIIATK------------------------NQPFDFDAI 179

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                  A    +TV   I DL  + +G    +  Y N P S +Q+++R N ++L +H + 
Sbjct: 180  ------AKQPKVTVEQAISDLNFLESGEGDFLQTYPNKPQSHYQQQMRQNSSLLYNHQAT 233

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
              + + L +   IP  P  D   LP                       K   ++   +GR
Sbjct: 234  NHSSVALQKLAMIP--PEGDKTSLPAH--------------------LKGRQKFDTTWGR 271

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   PT I         G   HP   R +T RE AR Q F D + F+G      +QI
Sbjct: 272  LKWQSVSPT-IDTRFDTPSNGCNSHPTLHRAITPREAARLQSFSDDFVFYGKKTEICKQI 330

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAVPP LA  +   +K  + 
Sbjct: 331  GNAVPPRLAHQIALAIKNLLN 351


>gi|119483468|ref|ZP_01618882.1| site-specific DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119458235|gb|EAW39357.1| site-specific DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 407

 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 182/453 (40%), Gaps = 86/453 (18%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             LDIFAG GG S G + +G  +    IE ++ AGE    NHPE+ ++I +   I      
Sbjct: 7    VLDIFAGAGGFSLGFKMAG-GTLVGGIEIDQWAGETLAYNHPETQIVIRDIQTI------ 59

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                     S  EA  L      NVI             GGPPCQGFS + R  +     
Sbjct: 60   ---------SDEEAISLFKYNKPNVII------------GGPPCQGFS-VCRQGRGDAKD 97

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGIL 1299
             +  +   F+ F   F+P   L+ENV N              +    L+++GY V + +L
Sbjct: 98   PRNTLFQEFIRFGSIFEPDLMLMENVPNLAKIKTKSDQAVIDIIKDELIKLGYHVDYSVL 157

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +G+ Q+R+R FI A+    T P +P   H  A+           Q S   ++    
Sbjct: 158  NATDYGIPQNRRRLFIVASKVKITHP-FPPSTHTIAS---------QSQLSFWENSLLPC 207

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            P    T+ D I DLP +  G     + Y   P + +QKR+RGN  +L +H  K MN    
Sbjct: 208  P----TLWDAISDLPILEAGEGAEKISYSKPPETDYQKRLRGNCKLLYNH--KAMNHTKR 261

Query: 1420 IRCQKIPKRPGADWHDLPDE--KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
            +  +      G    D+PD     K ++ ++  L+     N  + H              
Sbjct: 262  MVERFSSMSWGDSCSDVPDHLRPRKRNSDEIATLV--YDQNNRRLH-------------- 305

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS---IQHK------ 1528
              P+      P        HP  +R  T RE AR Q FPD Y F G    + HK      
Sbjct: 306  --PSRPCHTLPASFYANFVHPYYNRNFTAREGARIQSFPDHYLFRGKPTVVSHKLLAREG 363

Query: 1529 ---------HRQIGNAVPPTLAFALGRKLKEAV 1552
                     + QIGNAVPP LA  +   L E +
Sbjct: 364  RENEKFLCQYNQIGNAVPPLLAQQIAHHLFEQL 396


>gi|408906497|emb|CCM12282.1| DNA-cytosine methyltransferase [Helicobacter heilmannii ASB1.4]
          Length = 353

 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 180/434 (41%), Gaps = 86/434 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
             +  DIF G GGLS G  Q+ +    WA++++  A  +++ NH  +  +   C  I +  
Sbjct: 3    FSVADIFCGAGGLSYGFAQNPLFDLVWALDHDSSALASYQSNHKTTKTI---CKDIAQFS 59

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             E+C                              G +D + GGPPCQ +S + +    T 
Sbjct: 60   KEECLGY---------------------------GSIDVLLGGPPCQSYSTLGKRQMDT- 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   +L       P+ FL ENV   +S   G+ F    A   +MGYQ+   +L 
Sbjct: 92   ---RAHLFQEYLKILAAVHPKIFLFENVVGLLSMQGGKLFHSICACFAQMGYQIYSRVLN 148

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            A  FGV Q R+R  +         P  +P+P H     E +                   
Sbjct: 149  AMHFGVPQIRQRVILVGVDHSYQKPFVFPKPTH-----EKEF------------------ 185

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                + +R  + DLP + +G S   + Y++   + F + +R +   L++HIS + N   L
Sbjct: 186  ----INLRLALDDLPQIKSGESGDHLGYRHPANNPFLEFVR-DSPTLSEHISPK-NNPRL 239

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            ++  +   + G D  DLP               P   P +      +   + ++ WE   
Sbjct: 240  VQIMEA-LQDGQDKRDLP---------------PALRPKSG-----YANTYAKMHWEQPA 278

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT IT          C HP   R L++RE AR Q FPDSY F G+   K  QIGNAVPP 
Sbjct: 279  PT-ITRNFATPSSSRCIHPRDSRALSIREGARLQSFPDSYIFCGNASAKRLQIGNAVPPL 337

Query: 1540 LAFALGRKLKEAVE 1553
            L+ +L + + + ++
Sbjct: 338  LSISLAQTIGDYLQ 351


>gi|384899203|ref|YP_005774583.1| Type II DNA modification enzyme [Helicobacter pylori F30]
 gi|317179147|dbj|BAJ56935.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 351

 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 174/420 (41%), Gaps = 87/420 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSSSAKRLQIGNAVPPLLSVAL 338


>gi|17225517|gb|AAL37447.1|AF328915_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLECLKEFDALIGLDCDKQALITFENNHKNATGI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE  R Q F D Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREATRIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|296414683|ref|XP_002837027.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632876|emb|CAZ81218.1| unnamed protein product [Tuber melanosporum]
          Length = 939

 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 189/444 (42%), Gaps = 67/444 (15%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLINNCNVILRAVM 1181
            +D+F G G    GL++ G+   KWA++ + PA   ++ N  + ++ + + + N  +    
Sbjct: 537  MDLFCGGGSFGRGLEEGGVIDMKWAVDIDVPAIATYRANLRNQDTALYLGSVNNYM---- 592

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                  ED +   + + L A  DE           VDFI+ G PCQGFS  N+   +   
Sbjct: 593  ------EDAIR-GKYSHLVAHPDE-----------VDFISAGSPCQGFSNANQLKNNDTG 634

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT------FRLTLASLLEMGYQVR 1295
               C ++ +  +  D F+PRY LLENV    S  K  T      F   +  ++ MGYQ +
Sbjct: 635  LRNCSLVASVATAVDVFRPRYALLENVGGLASTRKLSTGVEVNVFAQLVCCVVGMGYQTQ 694

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELK---IMLSDNYQYSAV 1352
               L++ +FG +QSR R F+  A+P   LP  P   H    P +K   +  + N    A 
Sbjct: 695  QFTLDSWSFGSAQSRTRLFLSIAAPGTGLPPRPTRSHDH-GPFVKKRGLFTAPNGDKFAQ 753

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA-VLTDHIS 1411
            R      P+  +T ++ +  LP +G G     + + +   S    R   N+   L  H+ 
Sbjct: 754  REIEGPCPYSLVTFKNGMRGLPNLGTGHVGACIPFPDHRHS----RTENNLTRTLISHVP 809

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLP---DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
            K          Q    R   D   +P    +KV   T     L+P C          W  
Sbjct: 810  K--------FGQNRTWRKALDTGVMPVLFGDKVTNKT----KLVPNC--------RSWS- 848

Query: 1469 LFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
               RLD +G   T  T   P     G   HP +DR++TV E  R+Q FPD     G+   
Sbjct: 849  ---RLDEDGLCRTVTTQLTPQCAFTGTWVHPMEDRLITVMEARRAQSFPDDEVLLGNNAQ 905

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEA 1551
              + +GN+V  ++A A G  ++ A
Sbjct: 906  AFKIVGNSVARSVALAWGVSMRYA 929


>gi|420490495|ref|ZP_14989081.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-13]
 gi|420524322|ref|ZP_15022732.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-13b]
 gi|393109838|gb|EJC10369.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-13]
 gi|393133481|gb|EJC33898.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-13b]
          Length = 351

 Score =  136 bits (343), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 187/431 (43%), Gaps = 89/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPRVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNIFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVES 1554
            L   + + + S
Sbjct: 338  LAHAVFDFLRS 348


>gi|322700739|gb|EFY92492.1| putative DNA cytosine methyltransferase [Metarhizium acridum CQMa
            102]
          Length = 950

 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 157/626 (25%), Positives = 242/626 (38%), Gaps = 127/626 (20%)

Query: 957  GETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDI 1016
            G TF    NV       C+L+ +             T++  R+  R  D+    A  S  
Sbjct: 346  GNTFLVHVNVASSTSEACELISV-------NTRHARTRLCFRKLLRRSDMDG-TAVTSAR 397

Query: 1017 REVYYSEETHLIFVEAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEHLHDPSK--GSL 1071
             E+ YS E+       I GKC VR      +IPA    A     F+  H   P+     L
Sbjct: 398  NELVYSNESIECDPSRIVGKCHVRFFPHSENIPAPYNRAGVGGYFYITHRVSPAGLCVPL 457

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            +  P+ ++  +    + SE                              L  LD+F G G
Sbjct: 458  RSFPSSLRQGFDPAVVISE------------------------------LRGLDLFCGGG 487

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
                GL++ G     WA                      N+CN   RA+     +   C 
Sbjct: 488  NFGRGLEEGGAVRMSWA----------------------NDCNA--RAIHTYMAN---CS 520

Query: 1192 STSEAAELAASLDE--------NVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
              +  +    S+D+        N   ++P  G VDFI+GG PC GFS +     +   + 
Sbjct: 521  HPNLLSPYLGSIDDFQKEAFSGNFSKSVPTIGSVDFISGGSPCPGFSLLTNDKTTDEQRK 580

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFGILE 1300
               ++ AF S  D ++P Y LLENV   V    N+ Q      + +++ +GYQ +   L+
Sbjct: 581  NQSLVAAFASCVDLYRPMYGLLENVPGIVQSKANRDQDVLSQFICAIVGIGYQAQVFCLD 640

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE-----LKIMLSDNYQYSAVRST 1355
            A ++G +Q R R FI  A+P+  LP  P+  H           +K+   D     A R  
Sbjct: 641  ASSYGSAQRRSRVFISFAAPNYKLPGKPQQTHSHPPATRYTSFVKLPTGDAL---AERDF 697

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                PF   T R     LP + +G + T + + +                L   ++K++ 
Sbjct: 698  LRATPFSYSTARQVTSGLPKIYSGQTHTCITFPDH--------------RLASGLTKDLK 743

Query: 1416 ELNLIRCQKIPKRP-GADWHD------LPDEK-VKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
                 R   IP RP G D          P EK V L+  ++ +      PN   R +   
Sbjct: 744  A----RISLIPTRPWGMDLRSASREILTPAEKGVFLTKRKISE------PNKLDRSSS-- 791

Query: 1468 GLFGRLDWEGNFPTSITDPQPMG--KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
              +GRL +      +I   Q  G  K G   H D++R L+V E  R+QGFPD     G+ 
Sbjct: 792  -AYGRL-YPNQLMGAIITKQTPGDRKHGRQLHWDENRGLSVMEARRAQGFPDDEVILGTP 849

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEA 1551
              +++ +GN+V   +A ALG  ++EA
Sbjct: 850  AEQYKIVGNSVAREVALALGLSIREA 875


>gi|413915569|emb|CCM44165.1| DNA-cytosine methyltransferase [Staphylococcus xylosus]
          Length = 359

 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 187/436 (42%), Gaps = 87/436 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  LD+F G GGLS G Q +G +     IE++E A     L H ++     N N      
Sbjct: 3    LKVLDLFCGAGGLSLGFQNAGFN-IYGGIEWDEVAS----LTHTKNF----NTN------ 47

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD  +  + +   EL                Q+D I GGPPCQGFS  NR+ +   
Sbjct: 48   YHFAGDITEVSNETIKKELL---------------QIDVIIGGPPCQGFSSANRYLKDE- 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               + ++   +L F +  +P+ F++ENV   ++ + G      L       Y V   +L 
Sbjct: 92   DDPRNKLFYEYLRFVNIIRPKAFIIENVPGILTRDNGYAKEKILELTESYDYNVEVKVLS 151

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            +  +GV + RKRAF                   F      + L  N+        AN  P
Sbjct: 152  SENYGVPEIRKRAF-------------------FVGIRKDLNLKFNF--------ANLKP 184

Query: 1361 -FRAMTVRDTIGDLPAVGNGA-SKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             F   TV D I DL  + +G    T+   +  P+  +      N   + +H     NE  
Sbjct: 185  IFENTTVHDAIKDLEVLESGQLYNTLFGVELSPIQKYY--FDENSLQIENHNISVHNEKV 242

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R + +P+  G +W D+P+E              W      KR+N+    + RLD+   
Sbjct: 243  VERIKHVPQ--GGNWRDVPEEL-------------W----DTKRNNRHSSAYRRLDYSK- 282

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             P+   D   M      FHP   R+ +VRE AR Q F DS+ F+G+   +++Q+GNAVPP
Sbjct: 283  -PSITIDTGHMN----YFHPVFHRVPSVRESARIQSFNDSFVFYGTKTQQYKQVGNAVPP 337

Query: 1539 TLAFALGRKLKEAVES 1554
             LA AL +++K  +++
Sbjct: 338  ILAQALAQEVKVILDA 353


>gi|420530985|ref|ZP_15029360.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-28b]
 gi|393139011|gb|EJC39392.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-28b]
          Length = 351

 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 189/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ENLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|420519255|ref|ZP_15017699.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp H-5b]
 gi|393128347|gb|EJC28791.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp H-5b]
          Length = 351

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 186/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQVRERVILVGA-----LKRFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +                  L  GQ  D     LP + +  + +   + ++ WE   PT I
Sbjct: 240  QT-----------------LKDGQSKD----DLPESLRPKSGYINAYAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSANAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|385228214|ref|YP_005788147.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Puno120]
 gi|344334652|gb|AEN15096.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Puno120]
          Length = 351

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 178/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYINTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSSSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|402224965|gb|EJU05027.1| S-adenosyl-L-methionine-dependent methyltransferase [Dacryopinax sp.
            DJM-731 SS1]
          Length = 470

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 25/236 (10%)

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
            +QG  +    L  L +F G GGLS GL+Q+G   TKWAI+    A    K N P+   ++
Sbjct: 224  EQGATNPHIPLKCLALFHGAGGLSLGLEQAGCIVTKWAIDAYPSAHVTLKTNFPDVAAIL 283

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV--INNLPLPGQVDFINGGPPCQG 1228
             + N +LR  +E        ++  +       L+       +LP PG+VD I GGPPCQG
Sbjct: 284  QDTNAVLRRAIE--------LAEGKHPPPLFQLNSKTERCPDLPRPGEVDIIIGGPPCQG 335

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN------------- 1275
            FS +N F  +  S+    +I   LS+ D+  PR+ LLENV   +  +             
Sbjct: 336  FSRLNPFASALDSR--NSLIGNALSYVDFLHPRFVLLENVPPLLKMSSTVRDETGDEEHI 393

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPM 1331
            +    +L ++ L++ GYQVRF +L+AG  G  Q R RA  WAA   + LP++P P+
Sbjct: 394  ENAFAKLIVSFLVQRGYQVRFKVLQAGQHGAPQGRSRAIFWAAWHGEVLPDFPFPL 449


>gi|237753192|ref|ZP_04583672.1| cytosine specific DNA methyltransferase [Helicobacter winghamensis
            ATCC BAA-430]
 gi|229375459|gb|EEO25550.1| cytosine specific DNA methyltransferase [Helicobacter winghamensis
            ATCC BAA-430]
          Length = 354

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 170/426 (39%), Gaps = 84/426 (19%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            H   LD+F G GG S G+ Q+    T  A+++E+ A   F  N P++ ++          
Sbjct: 5    HFRVLDLFCGAGGFSSGIDQNPYFETLLALDFEQSAINTFSHNFPKAQVI---------- 54

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                CGD  D    +   + A  L            +V+ I GGPPCQGFS   +  +  
Sbjct: 55   ----CGDITDIKIKNTLIKQAKRL------------KVNMIIGGPPCQGFSLKGK--KLG 96

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  + L +L      QP  F++ENV++  S   G         + ++GY+V   IL
Sbjct: 97   LQDPRNFLFLEYLDIVKQLQPELFIIENVKSIFSTANGYFKNEIERHIQDLGYKVDSAIL 156

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  F V Q+R+RAF  A          P  M V                          
Sbjct: 157  NAKDFCVPQNRERAFFIAHKKEYLGFPAPSEMQV-------------------------- 190

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                  V+D I DL  + +   +    Y+N P S +QK +RG   +L  H +   +++ +
Sbjct: 191  -----CVKDAISDLAYLQSNQGEITSPYKNPPQSAYQKMLRGE--ILQYHKASNHSQIAI 243

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             + + IPK  G ++                  +P  L    K +  W    GRL W    
Sbjct: 244  KKLEMIPKEKGKEY------------------LPKNLHGKQKFNTTW----GRLKWNEIS 281

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            PT  T        G   HP   R +T RE AR Q F DS+ F G      +QIGNAVPP 
Sbjct: 282  PTIDTRFDTPSN-GTNSHPFLHRSITPREAARIQSFSDSFIFLGKKTQVCKQIGNAVPPL 340

Query: 1540 LAFALG 1545
            LA AL 
Sbjct: 341  LAKALA 346


>gi|453084864|gb|EMF12908.1| S-adenosyl-L-methionine-dependent methyltransferase [Mycosphaerella
            populorum SO2202]
          Length = 1034

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 196/451 (43%), Gaps = 73/451 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L +F G G    GL++ G    ++A++  E A  +++ N  +        +  L +V
Sbjct: 614  LTGLGLFCGGGTFDRGLEEGGAVQFRYAVDIAEEALHSYRANTADP----EQTSYYLGSV 669

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             E    A    S+   AE               PG +  I+ G PCQGFS + ++  S  
Sbjct: 670  NEYLASALAGESSDIVAE---------------PGSIHVISAGSPCQGFSNLQQYKDSDR 714

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK---GQ-TFRLTLASLLEMGYQVRF 1296
            SK    M+ + +S+ D + PRY +LENV    +  K   GQ  F   +A+L+ +GYQV+ 
Sbjct: 715  SKRNASMVASVISYVDLYAPRYLILENVIAMTTSIKEHGGQNVFSQMIAALVGLGYQVQQ 774

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP-ELKIMLS----DNYQYSA 1351
             +++A  +G SQ+R R FI A++P   + E  +  H  A P EL+ ML      N +   
Sbjct: 775  FLMDAYYYGSSQARSRVFILASAPICEVLEQQDYTH--ARPTELERMLHLGKCSNGKPFG 832

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH-I 1410
             R      PF  ++  +++GDLP V +G      ++                    DH  
Sbjct: 833  SRQEEAYFPFAQVSAEESVGDLPVVFDGQPLLCPQF-------------------PDHRT 873

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK--- 1467
            + E   +N  R   +PKRP           + L    +  L+     + +  HNQ +   
Sbjct: 874  ATEETVINRDRIAAVPKRPFG---------MSLKRAALAGLVRGEPLDFSNGHNQIRCGP 924

Query: 1468 --GLFGRLDWEGNFPT-----SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
                + R+     FPT     S+TD    G  G   H ++DR+LT+ E  R+QG PD   
Sbjct: 925  NSNSYRRIFPNRPFPTIITMISVTD----GIAGQVVHWNEDRVLTIMETRRAQGLPDDEV 980

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
              G    + + +GN V   +A  LG  L+++
Sbjct: 981  LVGLPAERLKIVGNGVDRKVALVLGLSLRKS 1011


>gi|313677760|ref|YP_004055756.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944458|gb|ADR23648.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 346

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 185/434 (42%), Gaps = 104/434 (23%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F GCGGLS+G  ++  +     I++ + A E F  NH  S  ++            
Sbjct: 7    VIDLFCGCGGLSQGFIEADYNVI-LGIDHWKDAIETFNYNHKNSKGIV------------ 53

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                          A+L  +LD   I        VD I GGPPCQGFS   +        
Sbjct: 54   --------------ADLL-NLDPQEIKTRYAIENVDLIVGGPPCQGFSIAGK---RIIDD 95

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + ++  +FL F DYF+P+ F++ENV N +S   G      L    ++GY++ +  L A 
Sbjct: 96   ERNQLYKSFLRFVDYFKPKGFVMENVPNILSMGNGAVKSQILKDFKDIGYKINYNKLLAS 155

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             F V Q+R+RAF +    +    E+P+P           + +DN                
Sbjct: 156  DFAVPQNRRRAF-FVGLKNSLEFEFPKP-----------ITTDN---------------- 187

Query: 1363 AMTVRDTIGDLP--AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
             +T  + I DLP  ++ +G   TI     +P S FQ+ +R    V+ +H     +E  + 
Sbjct: 188  KITSEEAISDLPKDSLEDGCQYTI-----NPKSVFQREMRNGNKVVFNHQITNHSEKTVE 242

Query: 1421 RCQKIPKRPGADWHDLPDE-----KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
                +P   G ++ DLP E     KV ++  ++    P    +T  RH+           
Sbjct: 243  IIGMVPD--GGNYKDLPKELHETRKVNIAWTRLNSKKPSFTIDTGHRHH----------- 289

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
                                FH + +R+ TVRE AR Q F D + F GS   +++Q+GNA
Sbjct: 290  --------------------FHYEFNRVPTVRESARIQSFRDEFIFCGSKTSQYKQVGNA 329

Query: 1536 VPPTLAFALGRKLK 1549
            VPP LA  +  K+K
Sbjct: 330  VPPLLAKEIALKIK 343


>gi|420406668|ref|ZP_14905838.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6311]
 gi|393023505|gb|EJB24619.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6311]
          Length = 351

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 178/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKKT-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R F+        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVFLVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSSSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|308182632|ref|YP_003926759.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori PeCan4]
 gi|308064817|gb|ADO06709.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori PeCan4]
          Length = 351

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 176/431 (40%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E          IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHEE-------VQTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FHKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDDYKFCGSASAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420468527|ref|ZP_14967269.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-10]
 gi|393088208|gb|EJB88860.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-10]
          Length = 352

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 188/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +        L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQVRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNIFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|420430157|ref|ZP_14929187.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-20]
 gi|393048776|gb|EJB49743.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-20]
          Length = 351

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 186/431 (43%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLHC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQVRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNIFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|419881089|ref|ZP_14402439.1| putative DNA methylase [Escherichia coli O111:H11 str. CVM9545]
 gi|421776835|ref|ZP_16213437.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli AD30]
 gi|432850040|ref|ZP_20081021.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli KTE144]
 gi|388366340|gb|EIL30076.1| putative DNA methylase [Escherichia coli O111:H11 str. CVM9545]
 gi|408458217|gb|EKJ82006.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli AD30]
 gi|431400932|gb|ELG84290.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli KTE144]
          Length = 346

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 190/439 (43%), Gaps = 102/439 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +   D F+GCGG S+G  Q+G+    + ++++  A  +F+ N P++  + ++  +I    
Sbjct: 4    IKVFDFFSGCGGTSQGFHQAGMDIV-FGLDFDVDAASSFRANFPQAAFINSDIRLI---- 58

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFI--NGGPPCQGFSGMNRFNQS 1238
                                   D N IN L    + D+I  +G  PCQ +S  N   ++
Sbjct: 59   -----------------------DNNAINKLVKKHRNDYILFSGCAPCQPYSKQNSNKKN 95

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ-TFRLTLASLLEMGYQVRFG 1297
               ++  +++  F  F +++ P +  +ENV     FNK + TF + L  L   GY V + 
Sbjct: 96   DDPRL--DLLKEFSRFVEHYMPDFIFVENVPGMQKFNKNEGTFMMFLEMLSSKGYSVDYK 153

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            ++ A  +GV Q+R+R  + A+   D     P P H             N  YS       
Sbjct: 154  VMPAAWYGVPQTRERLVLIASK--DFYVALPSPTHGVG----------NTPYS------- 194

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                   TV+D I +LP +  G      E  N                + DH +  ++EL
Sbjct: 195  -------TVKDWIANLPKIEAG------EKHNS---------------IPDHEAARLSEL 226

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE- 1476
            NL R +  P+  G      PDE           LI  C  N    H     ++GRL W+ 
Sbjct: 227  NLRRIKCTPE--GGSREFWPDE-----------LILECHRN----HKGHTDVYGRLSWDK 269

Query: 1477 -GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
              +  T+       G+ G   HP Q+R ++VRE A  Q FP  Y+F GS+Q + RQIGNA
Sbjct: 270  PASGLTTRCISYSNGRFG---HPTQNRAISVREAACLQTFPLDYKFIGSLQSRARQIGNA 326

Query: 1536 VPPTLAFALGRKLKEAVES 1554
            VPP ++  +G+ L   +++
Sbjct: 327  VPPKMSETIGKHLLNIIKA 345


>gi|300905017|ref|ZP_07122835.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301305818|ref|ZP_07211903.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|415865124|ref|ZP_11538058.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|424757713|ref|ZP_18185448.1| putative DNA methylase [Escherichia coli O111:H11 str. CFSAN001630]
 gi|300403166|gb|EFJ86704.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300838908|gb|EFK66668.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315254408|gb|EFU34376.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|421949161|gb|EKU06151.1| putative DNA methylase [Escherichia coli O111:H11 str. CFSAN001630]
          Length = 354

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 190/439 (43%), Gaps = 102/439 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +   D F+GCGG S+G  Q+G+    + ++++  A  +F+ N P++  + ++  +I    
Sbjct: 12   IKVFDFFSGCGGTSQGFHQAGMDIV-FGLDFDVDAASSFRANFPQAAFINSDIRLI---- 66

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFI--NGGPPCQGFSGMNRFNQS 1238
                                   D N IN L    + D+I  +G  PCQ +S  N   ++
Sbjct: 67   -----------------------DNNAINKLVKKHRNDYILFSGCAPCQPYSKQNSNKKN 103

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ-TFRLTLASLLEMGYQVRFG 1297
               ++  +++  F  F +++ P +  +ENV     FNK + TF + L  L   GY V + 
Sbjct: 104  DDPRL--DLLKEFSRFVEHYMPDFIFVENVPGMQKFNKNEGTFMMFLEMLSSKGYSVDYK 161

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            ++ A  +GV Q+R+R  + A+   D     P P H             N  YS       
Sbjct: 162  VMPAAWYGVPQTRERLVLIASK--DFYVALPSPTHGVG----------NTPYS------- 202

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                   TV+D I +LP +  G      E  N                + DH +  ++EL
Sbjct: 203  -------TVKDWIANLPKIEAG------EKHNS---------------IPDHEAARLSEL 234

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE- 1476
            NL R +  P+  G      PDE           LI  C  N    H     ++GRL W+ 
Sbjct: 235  NLRRIKCTPE--GGSREFWPDE-----------LILECHRN----HKGHTDVYGRLSWDK 277

Query: 1477 -GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
              +  T+       G+ G   HP Q+R ++VRE A  Q FP  Y+F GS+Q + RQIGNA
Sbjct: 278  PASGLTTRCISYSNGRFG---HPTQNRAISVREAACLQTFPLDYKFIGSLQSRARQIGNA 334

Query: 1536 VPPTLAFALGRKLKEAVES 1554
            VPP ++  +G+ L   +++
Sbjct: 335  VPPKMSETIGKHLLNIIKA 353


>gi|420424632|ref|ZP_14923696.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-5]
 gi|393043219|gb|EJB44223.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-5]
          Length = 361

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 177/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL           ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLGYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + +++ I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQEAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|385226718|ref|YP_005786642.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SNT49]
 gi|344331631|gb|AEN16661.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SNT49]
          Length = 351

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 175/432 (40%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + +E A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDEDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CYNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            GV Q R+R   + A         +P+P+                                
Sbjct: 151  GVPQIRERVILVGALKSFKQKFRFPKPIKTH----------------------------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +                  L  GQ  D     LP + +  + +   + ++ WE   PT I
Sbjct: 240  QT-----------------LKDGQSKD----DLPESLRPKSGYTNTYAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD Y+F GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDDYKFCGSSSAKRLQIGNAVPPLLSMA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|15678523|ref|NP_275638.1| modification methylase [Methanothermobacter thermautotrophicus str.
            Delta H]
 gi|2621566|gb|AAB85001.1| modification methyltransferase, cytosine-specific
            [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 413

 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 190/449 (42%), Gaps = 64/449 (14%)

Query: 1121 LATLDIFAGCGGLSEGLQQSG------ISSTKWAIEYEEPAGEAFKLNH---PESLMLIN 1171
            +  +DIFAG GGL+EG  +S       I   + AI+  E  G    L     PE      
Sbjct: 4    VVLIDIFAGAGGLTEGFLRSDYTFVSHIEMDRDAIQTLETRGLYHHLQSDGDPEDYTEYV 63

Query: 1172 NCNVILRAVMEKCGD--AEDCVSTSEAAELAASLDENVINNLPLPG--QVDFINGGPPCQ 1227
            N  +    +  +  D  +E  ++     E    + E + + +   G   VD I GGPPCQ
Sbjct: 64   NGEIGREELFRRYPDFDSELYMNLELTEENVDRVIETIRSKMNDMGTVSVDGIIGGPPCQ 123

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
             +S   R  ++     +  + L ++ F   FQP +F+ ENV    S  +G         +
Sbjct: 124  AYSYAGRSRKNMEKDRRNYLYLLYIKFLKEFQPEFFVFENVPGMKSAQRGHILSDFQRKV 183

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             ++ Y++ F + +A  FGV Q R+R  +      D   ++ E  +               
Sbjct: 184  TDLEYKLDFEVRDAYNFGVPQRRRRIIVIGHRMEDKRIQFDEERY--------------- 228

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKR-IRGNMAV 1405
                           A TV D + DLPA+  G  +    EY++ P     +  IR    +
Sbjct: 229  ---------------AGTVNDILCDLPALEPGQGTDGPQEYRSRPSRLLNEMGIRTENDI 273

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            L  H ++  N     R ++I +R    W+    E+ +L   +        LP   + H  
Sbjct: 274  LRHHQARRHNP----RDREIYRRTIDAWNS---ERRRLKYTE--------LPPELRTHRN 318

Query: 1466 WKGLFGRLDW-EGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDSYQF 1521
             +    R     G+ P S T    + K G  + HPD  Q R LTVRE AR Q FPD+Y F
Sbjct: 319  TRSFLDRYKVVAGDLPYSHTIVAHISKDGHYYIHPDREQARSLTVREAARIQSFPDNYIF 378

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
             GS+  K+RQIGNAVPP ++  + RKL E
Sbjct: 379  EGSMTSKYRQIGNAVPPLMSEKIARKLYE 407


>gi|317054725|ref|YP_004103193.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
 gi|294869157|gb|ADF47149.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
          Length = 363

 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 182/433 (42%), Gaps = 85/433 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++EG +Q+G  S   AIEY+E A + F  NHP++ + I +    +R + E+
Sbjct: 5    VDLFAGAGGMTEGFEQAGYQSA-LAIEYDEMAAKTFSFNHPQTPVFIKD----IRTIQEE 59

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                    S  EA + +                +D + GGPPCQGFS   +         
Sbjct: 60   --------SVREALKYSP---------------IDVLCGGPPCQGFSLAGK---RLTDDP 93

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + ++ L F+   +   PR+F+ ENV    S + G      L      GY+  F +L A  
Sbjct: 94   RNQLFLEFVRMVNLINPRFFVFENVSGITSMSGGAILEAILQEFRTSGYECFFKVLNAAD 153

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R R F+      +    +P+P H  A   +  +   N               R 
Sbjct: 154  YGVPQARPRFFLIGTRDGEKY-NFPDPSH--APTSVNDLFLSNMP-------------RH 197

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA--VLTDHISKEMNELNLIR 1421
            + V D + DLP +  G     M+      + +Q   RGN +   L +H +   +E  + R
Sbjct: 198  LNVWDALSDLPYIEQGEGSEEMKNSTQAHNAYQLERRGNRSAGTLFNHRATGHSEAIVNR 257

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
               IP+  G +   +P   + + T ++         N  K H +        +       
Sbjct: 258  YSAIPE--GGNNSQVP---IHMRTKKI---------NVFKLHREKPSRTVTCNHR----- 298

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR------QIGNA 1535
              TD           HP   R  TVRE AR Q F D Y+F G++  K +      Q+GNA
Sbjct: 299  --TD---------LLHPVIPRGTTVREAARLQSFDDDYKFFGNLTRKAKWVTQDDQVGNA 347

Query: 1536 VPPTLAFALGRKL 1548
            VPP LA A+ + L
Sbjct: 348  VPPLLARAIAKSL 360


>gi|420433643|ref|ZP_14932651.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-24]
 gi|420507397|ref|ZP_15005910.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp H-24b]
 gi|420509085|ref|ZP_15007587.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp H-24c]
 gi|420532834|ref|ZP_15031197.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M1]
 gi|420534397|ref|ZP_15032748.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M2]
 gi|420536203|ref|ZP_15034545.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M3]
 gi|420537907|ref|ZP_15036237.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M4]
 gi|420541394|ref|ZP_15039702.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M6]
 gi|420542914|ref|ZP_15041209.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M9]
 gi|393051171|gb|EJB52124.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-24]
 gi|393119478|gb|EJC19969.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp H-24b]
 gi|393120511|gb|EJC21000.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp H-24c]
 gi|393140465|gb|EJC40838.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M1]
 gi|393142620|gb|EJC42974.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M2]
 gi|393143851|gb|EJC44195.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M3]
 gi|393145462|gb|EJC45793.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M4]
 gi|393148014|gb|EJC48338.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M6]
 gi|393159977|gb|EJC60226.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M9]
          Length = 351

 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 188/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +G  Q R+R  +       TL  + +  H F  P +K   S                   
Sbjct: 150  YGAPQVRERVILVG-----TLKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|281491831|ref|YP_003353811.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp. lactis
            KF147]
 gi|281375542|gb|ADA65048.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp. lactis
            KF147]
          Length = 347

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 173/434 (39%), Gaps = 93/434 (21%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N L+ +D+F+G GGLS G + +G       I+ +  A   F+ NH  S  L         
Sbjct: 3    NKLSVIDLFSGAGGLSYGFELAGYD-ILLGIDNDFDALRTFEKNHKNSKTL--------- 52

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG--FSGMNRFN 1236
                  GD        +   L        IN+     ++D I GGPPCQG   SG  +F 
Sbjct: 53   -----EGDITQFTYEKDIKPL--------IND----QKIDIIVGGPPCQGMSLSGPRKFE 95

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
                S     + L+++      +P+ F++ENV    S  KGQ     +    EMGY+V +
Sbjct: 96   DPRNS-----LYLSYIRLVSEIRPKAFVIENVPGLASLFKGQIKDSIIEKFTEMGYKVNY 150

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             IL A  FGV Q R+R  ++    +D           F  PE                  
Sbjct: 151  KILVASDFGVPQKRRR-IVFVGLQNDVFD--------FNFPE------------------ 183

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
                F  +T    + DLP++ +       EY N P + +QK +R   A L +H++   N+
Sbjct: 184  ----FGMVTTEMALSDLPSLEDELGTEESEYSNKPQNSYQKVMRTGSAKLMNHVAANHNQ 239

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
                    +P   G ++ DLP+E                   T   H  W          
Sbjct: 240  KTKDIISLVPA--GGNYKDLPEE----------------FRETRNFHVAWT--------- 272

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
              FP     P         FH   +R+ TVRE AR Q FPD + F GS   + RQ+GNAV
Sbjct: 273  -RFPKDAPSPTIDTGHRHHFHYQYNRVPTVRESARLQSFPDKFIFTGSKTKQFRQVGNAV 331

Query: 1537 PPTLAFALGRKLKE 1550
            PP +A  +  +L++
Sbjct: 332  PPLMAKVIAERLRD 345


>gi|15611502|ref|NP_223153.1| type II DNA modification (methyltransferase [Helicobacter pylori J99]
 gi|4154963|gb|AAD06007.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
            pylori J99]
          Length = 351

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPRVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSANAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|298204472|emb|CBI23747.3| unnamed protein product [Vitis vinifera]
          Length = 83

 Score =  135 bits (340), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/70 (85%), Positives = 63/70 (90%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            GQVDFINGGPPC GFSGMN  NQS WSKVQ EMILAFLSFADYFQPR+FLLE+VRNF+SF
Sbjct: 3    GQVDFINGGPPCPGFSGMNPCNQSNWSKVQGEMILAFLSFADYFQPRFFLLEHVRNFMSF 62

Query: 1275 NKGQTFRLTL 1284
            NKGQ FR TL
Sbjct: 63   NKGQAFRQTL 72


>gi|224031943|gb|ACN35047.1| unknown [Zea mays]
          Length = 329

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 144/298 (48%), Gaps = 48/298 (16%)

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF----AAPEL--KIML 1343
            M YQ R G++ AG +G+ Q R R F+W A     LP++P P +       AP    + M+
Sbjct: 1    MKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMV 60

Query: 1344 S-DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR-- 1400
            + D  Q  +++        +A+ + D   DLP V N     +MEY   P + FQ+ IR  
Sbjct: 61   AYDETQRPSLK--------KALLLGDAFSDLPKVENHQPNDVMEYGGSPKTEFQRYIRLG 112

Query: 1401 --------------GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG 1446
                           +   L DH    +N  +  R ++IP + GA++ DL  + VK+   
Sbjct: 113  RKDMLDWSFGEEAGPDEGKLLDHQPLRLNNDDYERVKQIPVKKGANFRDL--KGVKVGAN 170

Query: 1447 QVVDLIPWC-----------LPNTAKRHNQWKGL--FGRLDWEGNFPTSITDPQPMGKVG 1493
             VV+  P             +P+ A    + K L  FGRL W+   PT +T  +P  +V 
Sbjct: 171  NVVEWDPEVERVYLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV- 229

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
               HP Q R+LT+RE AR QGFPD Y+  G I+ K+ Q+GNAV   +A ALG  L +A
Sbjct: 230  -ILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQA 286


>gi|386750888|ref|YP_006224108.1| type II DNA modification methyltransferase [Helicobacter pylori
            Shi417]
 gi|384557146|gb|AFH97614.1| type II DNA modification methyltransferase [Helicobacter pylori
            Shi417]
          Length = 348

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 173/422 (40%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERDYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L+VRE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSVREGARLQSFPDNYKFCGSTSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
              
Sbjct: 339  AH 340


>gi|420471951|ref|ZP_14970647.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-18]
 gi|393091306|gb|EJB91938.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-18]
          Length = 348

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 180/422 (42%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELVWANDIDKDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
             +   CVS                        +D + GGPPCQ +S + +         +
Sbjct: 60   HNLP-CVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
             +
Sbjct: 339  AQ 340


>gi|420501298|ref|ZP_14999842.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-30]
 gi|393150104|gb|EJC50412.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-30]
          Length = 351

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 178/424 (41%), Gaps = 87/424 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + +  A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDRDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
             +   CVS                        +D + GGPPCQ +S + +         +
Sbjct: 60   HNLP-CVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVHQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP + +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPESLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKL 1548
             + +
Sbjct: 339  AQAV 342


>gi|384897195|ref|YP_005772623.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Lithuania75]
 gi|317012300|gb|ADU82908.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
            pylori Lithuania75]
          Length = 348

 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 182/423 (43%), Gaps = 89/423 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKKT-------QTILCDIMQL- 57

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                DC                  +NLP    +D + GGPPCQ +S + +         +
Sbjct: 58   ----DC------------------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA- 1363
            GV Q R+R  +       TL  + +  H   +P+                     P +  
Sbjct: 151  GVPQIRERVILVG-----TLKSFKQKFH---SPK---------------------PIKTH 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD Y+F GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDDYKFCGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGR 1546
            L +
Sbjct: 338  LAQ 340


>gi|421721497|ref|ZP_16160772.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R055a]
 gi|407224832|gb|EKE94607.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R055a]
          Length = 351

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 181/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSIHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV + +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVSLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|336392213|ref|ZP_08573612.1| cytosine specific DNA methyltransferase [Lactobacillus coryniformis
            subsp. torquens KCTC 3535]
          Length = 349

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 186/426 (43%), Gaps = 87/426 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGLS G + +G +    A E +     +++ NHPE+ M+              
Sbjct: 5    IDLFSGVGGLSIGFRNAGYNVV-LANEIDASIANSYQKNHPETKMI-------------- 49

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                ED      A   A   D            V  I GGPPCQGFS   +  + +    
Sbjct: 50   ---NEDITKLDIADTFAEYRD------------VGMIIGGPPCQGFSQKGK--RLSLRDP 92

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE-MGYQVRFGILEAG 1302
            +  +   F     + +P  F++ENV N ++   G  F+  +  L E +GY+V   +L A 
Sbjct: 93   RNYLFRYFFDVVKFVKPENFVIENVPNLLTAANGY-FKNEIYELFESLGYEVISDVLNAK 151

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +GV Q+R+RA I  +   + L ++P+  +                              
Sbjct: 152  DYGVPQARRRAIIIGSLRKNVL-KFPKKQN-----------------------------E 181

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
              TV D I DL  + +G  + + EY+  P S +Q+ +R +   L +H++ + + L + R 
Sbjct: 182  MTTVWDAISDLAFLESGEGEQVQEYKFIPQSKYQEMMRKHSTNLYNHVATKHSALAIERM 241

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
              +P+  G +  DLP+E +  S                     + G +GR+D + +   +
Sbjct: 242  MLVPENGGRE--DLPEEHLTKSI--------------------FSGTWGRMD-KNSQSVT 278

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            IT        G   HP  +R +TVRE AR Q FPD+  F+G+   + +Q+GNAVPP +A 
Sbjct: 279  ITTRFDTPSSGRFTHPYLNRAITVREAARIQSFPDNMIFYGTKTSQMKQVGNAVPPLMAE 338

Query: 1543 ALGRKL 1548
            A+   +
Sbjct: 339  AIANSI 344


>gi|18542936|gb|AAL75761.1| Putative DNA cytosine methyltransferase MET2a [Oryza sativa Japonica
            Group]
          Length = 719

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 50/261 (19%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFN--QSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG VD I GGPPCQG SG NRF   +      + + ++ F+    Y +P+Y L+ENV
Sbjct: 476  LPLPGDVDVICGGPPCQGISGFNRFRNRKEPLKDEKNKQMVTFMDIVAYLKPKYVLMENV 535

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F  G   R  L+ L+ M YQ R G++ AG +G+ Q R R F+W A P   LP++P
Sbjct: 536  VDILKFADGYLGRYALSRLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALPTMVLPKYP 595

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
             P H                               + VR    +  +V N     +MEY 
Sbjct: 596  LPTH------------------------------NVVVRGGAPNAFSVNNHQPNEVMEYG 625

Query: 1389 NDPVSWFQKRIR----------------GNMAVLTDHISKEMNELNLIRCQKIPKRPGAD 1432
            + P + FQ+ IR                 ++  L DH   ++N+ +  R Q+IP + GA+
Sbjct: 626  SSPKTEFQRYIRLSRKEMLDSSFEGKDGPDLGKLLDHQPLKLNKDDHERVQQIPVKKGAN 685

Query: 1433 WHDLPDEKVKLSTGQVVDLIP 1453
            + DL  + V++    +V+  P
Sbjct: 686  FRDL--KGVRVGANNIVEWDP 704



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            AS       LD+++GCGG+S GL      +G++  T+WA+++   A E+ K NHP +
Sbjct: 307  ASSVGKATLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRT 363


>gi|420478963|ref|ZP_14977615.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-34]
 gi|393096518|gb|EJB97116.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-34]
          Length = 351

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ENLRPKSGYI---------NT----------YAKMWWEKPAPTII 278

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
             +         C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 279  RNFS-TPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|386755513|ref|YP_006228730.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            PeCan18]
 gi|384561771|gb|AFI02237.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            PeCan18]
          Length = 351

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNIFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ENLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYRFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|428320197|ref|YP_007118079.1| DNA-cytosine methyltransferase [Oscillatoria nigro-viridis PCC 7112]
 gi|428243877|gb|AFZ09663.1| DNA-cytosine methyltransferase [Oscillatoria nigro-viridis PCC 7112]
          Length = 391

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 186/459 (40%), Gaps = 112/459 (24%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE---SLMLINNCNV 1175
            N   T+ +F G  GL  GL+++G  +    +E E  A +   LN P    S +  + C V
Sbjct: 4    NKPITISLFTGAYGLDLGLEKAGFQTVSL-VEIEPDATKTISLNRPHLSVSAVPRDICEV 62

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
              + ++E+ G          A E                  VD + GGPPCQ FS   + 
Sbjct: 63   SAKTLLEEGGHILGLDRPLRAEE------------------VDLVTGGPPCQPFSTAGK- 103

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN-------------------- 1275
             + +    +  + + F+   D  +PR+F++ENV+  +S                      
Sbjct: 104  -RGSVGDPRGSLFMDFIRIVDEIKPRFFIMENVKGLLSAPIRHRPHDRRGLGCPQLEADE 162

Query: 1276 -KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
              G   ++ LA +  +GY+V + +L    +GV Q R+R        +D++   P P    
Sbjct: 163  MPGAALQVILAEMKRIGYEVVYDLLNTADYGVPQVRERVIFIGYKGNDSV-TLPLP---- 217

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
                       NY          G   + +T+R+ + DL           ++ Q + V +
Sbjct: 218  -----------NYS-----QKGTGKKPKWLTLREGLKDL-----------VDSQPEFVPY 250

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
             + R++  + +LT                      G +W DLP E  + + G        
Sbjct: 251  SESRVK-YLRLLTA---------------------GQNWRDLPSELKQEAMG-------- 280

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
                  K      G + RL WE   PT  T P       MC HPD+ R L+VRECAR Q 
Sbjct: 281  ---GAYKSEGGKVGFYRRLAWEKPSPTVTTSPH-QKATDMC-HPDELRPLSVRECARIQT 335

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            FPD + F+GS   K+RQIGNAVP  L  A+G+ L + ++
Sbjct: 336  FPDDWVFYGSTASKYRQIGNAVPVLLGEAIGKYLCQVIK 374


>gi|406865911|gb|EKD18952.1| beta-Ala-His dipeptidase [Marssonina brunnea f. sp. 'multigermtubi'
            MB_m1]
          Length = 2005

 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 185/773 (23%), Positives = 301/773 (38%), Gaps = 163/773 (21%)

Query: 767  GSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQ 826
            G  V+V  +   + P    +  +FE        H    + GS+T+LG TA  RE+FL   
Sbjct: 1181 GDCVIVASEAQSEEPRFARIISIFEDEDDEVSVHLRWFEVGSNTILGETAGPRELFLLTS 1240

Query: 827  CRDLELQDIKQTVVVDIRSVPWGHQH--RKDIANADKVDRARAEERKKKGLPTEYYCKSL 884
            C    +  I   V V      +G Q+  R D + +D +D       +  G    YY    
Sbjct: 1241 CDSNPVNCIVAKVKVGF----FGDQNSGRYD-SVSDTIDH------EDFGF---YYRH-- 1284

Query: 885  YWPERGAFFILPVDS-----MGLG----VGSCHACGTKESEKEKETFKV------HSK-- 927
            +W      F    D      +GLG     G+CH C       + E  ++       SK  
Sbjct: 1285 HWNPNSKQFTSASDHESNIYLGLGKKSLSGTCHCCKIMAERLQDEETRILWDIVPDSKGR 1344

Query: 928  ---TSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKE 984
               + F     +Y   D+VY+ P     D +E             P  + Q+ +I + + 
Sbjct: 1345 GIISGFCSRQVQYRTLDFVYLLP----VDHSE-------------PCRIGQIQDIYLSRF 1387

Query: 985  PKRAEVKSTQV-------KVRRFFRPDDI---------SAEKAYCSDIREVYYSEETHLI 1028
             + +++ ST V       KV  + R DD+            K    D R ++++ ET  I
Sbjct: 1388 SEVSKLTSTMVSDHDVRLKVAIYKRYDDLVPSRGQEHEPGRKFGIRDSRRLFFTGETIKI 1447

Query: 1029 FVEAIAGKCEVRKKNDIPACNAPAIFQHIFFC-EHLHDPSKGSLKQLPAHIKLRYSSGSL 1087
                + G C V  ++ +   ++    +  F+  + L +         P  ++    SGS+
Sbjct: 1448 DGSIVDGVCYVLHRDHVDDLDSFKDQKDTFWVKDRLEEEIDWDSCVRPRDLR-PLDSGSV 1506

Query: 1088 DSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKW 1147
               A     + K I   + LE  ++          TL++F G GGL+   +  GIS    
Sbjct: 1507 RYSATKFEHEKKMILVREFLERGEKA--------RTLELFNGIGGLTVAFK--GISGITN 1556

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNC-NVILRAVMEKCGDAEDCVSTSEAAELAASLDE- 1205
            A+E +  A    + N P  ++   +  N++LRA+    G           A+L    D  
Sbjct: 1557 AVEIDPAACVTMRNNQPGVIVHKGDASNLLLRAIKRDQG-----------AKLGKLFDGK 1605

Query: 1206 -NVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264
             N+I +LP   QVDFI GGPPC G+S  N   Q    + +  ++  + ++ D+++P+Y L
Sbjct: 1606 GNLIPDLPFRDQVDFIKGGPPCPGYSVAN--CQKKDGEPKNSLVALYSAYVDFYRPKYSL 1663

Query: 1265 LENVRNFVSFN----------------KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            +ENV   +                   +  T R+   +   MGYQV+  +L A   G  Q
Sbjct: 1664 IENVTGLIHHTLRTPESNDFKTKPETLENGTIRMIYRTYTSMGYQVQCAVLYAEEHGSPQ 1723

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAA--------PELKIMLSDNYQYSAVRSTANGAP 1360
            SR R  IWA  P   LPE+P+P H++          P  K+  SD + +   RST    P
Sbjct: 1724 SRPRVIIWATQPGCRLPEYPQPEHLWKTRAACPIFMPGSKLNQSDFHWHRKRRST----P 1779

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIM----------------------------------E 1386
             R +T+ D   DLP         I+                                   
Sbjct: 1780 HRVVTLGDAWIDLPEYDIKNPHLIIPQTRFQKFEAEQRRNKITFYDSLDGESYVGSDNQT 1839

Query: 1387 YQNDPVSWFQKRIRGNMA--VLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            Y + P S +Q+ +R      V+T H+++++  +N  R   IP    A+   LP
Sbjct: 1840 YASGPKSEYQRIMRKGTTDNVITAHVTRKLTSINTERVCTIPLVTEANHESLP 1892


>gi|421711470|ref|ZP_16150813.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R030b]
 gi|407212619|gb|EKE82481.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R030b]
          Length = 351

 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 184/432 (42%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSMHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                                    +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 60   ------------------------HNLPRVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +                  L  GQ  D     LP + +  + +   + ++ WE   PT I
Sbjct: 240  QT-----------------LQDGQSKD----DLPESLRPKSGYINTYAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|315054007|ref|XP_003176378.1| hypothetical protein MGYG_00467 [Arthroderma gypseum CBS 118893]
 gi|311338224|gb|EFQ97426.1| hypothetical protein MGYG_00467 [Arthroderma gypseum CBS 118893]
          Length = 1091

 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 180/446 (40%), Gaps = 75/446 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L++F+G G    GL++     +KWA+E+       ++ NHP+   L    N+     
Sbjct: 633  LKALNLFSGGGTFDRGLEEGTAIESKWAVEWGLQQMLTYRANHPDGKGL----NLF---- 684

Query: 1181 MEKCGDAEDCVSTS---EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
               CG   D +S +   E  E  A +           G V FI+ G PCQG+S  N    
Sbjct: 685  ---CGSVNDYLSQAFRGEEHEYIAGI-----------GDVHFISAGSPCQGYSTANAHRH 730

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT-FRLTLASLLEMGYQVRF 1296
            +  S     MI +  S+ D+++P+Y +LENV    S    Q      L + + MGYQ R 
Sbjct: 731  NEMSMRNSSMITSVASYVDFYRPQYAILENVTGMASRTHEQNPLSQLLCAFVGMGYQARV 790

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
              L+A  FG  QSR R FI   +P   + E P   H          L DN   S      
Sbjct: 791  FNLDAWNFGAPQSRSRLFIAVTAPGLHIIEHPPLTHSHPPGTKSRTLGDNPNGSTFGERR 850

Query: 1357 NGAP-FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
               P F  ++      DLP +    +  IM      ++W   R            S+  +
Sbjct: 851  WDTPVFDFISASSATRDLPPIN---TARIMS-----ITWPDHR-----------PSRIES 891

Query: 1416 ELNLIRCQKIPKRPGAD---------WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQW 1466
            E      Q IPKRP +          W D  D   ++  G                   W
Sbjct: 892  EGRQALIQSIPKRPRSQGLIEAIARGWADPADHPERIKRGNC---------------KAW 936

Query: 1467 KGLFGRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
                 R+  +  FPT  T   P     G   H  ++R++TV+E  R+QG+PD+    GS 
Sbjct: 937  S----RVHPKKLFPTVTTSVCPFCIFTGRWLHWQENRLVTVQEVRRAQGYPDNEVLIGSP 992

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEA 1551
             H+ + +GN+V   +A ALG  ++EA
Sbjct: 993  VHQWKIVGNSVARQVALALGLAVREA 1018


>gi|420456726|ref|ZP_14955547.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-16]
 gi|393075357|gb|EJB76112.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-16]
          Length = 351

 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 185/431 (42%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHSYFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLHC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +                       LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGV--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G +  DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQNKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|332664528|ref|YP_004447316.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333342|gb|AEE50443.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM 1100]
          Length = 420

 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 206/463 (44%), Gaps = 84/463 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI----LRA 1179
            +D+FAG GGLSEG  Q+G       +E E+ A    K       +  N  + I    L+ 
Sbjct: 6    IDLFAGAGGLSEGFIQAGFEPIAH-VELEKSACNTLKTRAAYHYLKSNKRHEIYISYLKG 64

Query: 1180 VMEKCGDAEDCVSTSEAAELAASL-DENVINNLPL--------PGQVDFINGGPPCQGFS 1230
             + +    ++  +   A+ +  S+ DEN  NNL           G VD I GGPPCQ +S
Sbjct: 65   EITRAELYDNVPNEILASVINLSIGDEN--NNLIFNQIDSYLGKGAVDLIIGGPPCQAYS 122

Query: 1231 --GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL 1288
              G +R         +  + + + ++ + +QP+ F+ ENV    S  KG           
Sbjct: 123  VAGRSRSKTKMEGDPRNYLFVQYSAYLEKYQPKMFVFENVLGLKSAKKGHYLSEMEKLFN 182

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFAAPELKIMLSDN 1346
              GYQ++   +EA  FGV Q+RKR  I  W  S    +P+  +           I +  N
Sbjct: 183  AKGYQIKLFTIEAINFGVLQNRKRIIILGWQESAKLNIPDLED-----------IKIKGN 231

Query: 1347 YQYSAVRSTANGAPFRAMTVRDTIGDLPAV--GNGASKTIMEYQNDPVSWFQ-KRIRGNM 1403
            Y                  V D + DLP +  G G  +  ++Y+     + +   +R  +
Sbjct: 232  Y-----------------LVADLLNDLPIIKAGQGIDR-FLKYRTKTSEYLEFHSLRNGI 273

Query: 1404 AVLTDHI----SKEMNELNLIRCQKIPK-RPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
             VLT H+    S++  E+  I  QK  K +   +++DLP+   +L T Q          N
Sbjct: 274  DVLTQHVARPHSEQDKEIYKIAVQKWEKEQERLNYNDLPE---RLKTHQ----------N 320

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGF 1515
                ++++K +        N P S T    + K G  F HPD  Q+R +TVRE AR Q F
Sbjct: 321  RTSFYDRFKVV------AANLPYSQTVVAHIAKDGHYFIHPDIEQNRSITVREAARLQSF 374

Query: 1516 PDSYQFHGSIQHKHR-----QIGNAVPPTLAFALGRKLKEAVE 1553
            PD Y F G  +  +R     QIGNAVPP +A  +G+++ +A++
Sbjct: 375  PDDYYFEGEKEGFNRTPAFKQIGNAVPPLMAKIIGKEILKALK 417


>gi|420423359|ref|ZP_14922432.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-4]
 gi|393042639|gb|EJB43648.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-4]
          Length = 351

 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 189/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLISMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|419418098|ref|ZP_13958451.1| type II DNA modification enzyme [Helicobacter pylori NCTC 11637 =
            CCUG 17874]
 gi|384374751|gb|EIE30122.1| type II DNA modification enzyme [Helicobacter pylori NCTC 11637 =
            CCUG 17874]
          Length = 348

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 178/422 (42%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSVHPYFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
             +
Sbjct: 339  AQ 340


>gi|385249008|ref|YP_005777227.1| Type II DNA modification enzyme [Helicobacter pylori F57]
 gi|317181803|dbj|BAJ59587.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 351

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 177/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKKT-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420412053|ref|ZP_14911182.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4228]
 gi|420416683|ref|ZP_14915792.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4044]
 gi|393027711|gb|EJB28799.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4228]
 gi|393037112|gb|EJB38150.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4044]
          Length = 351

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 180/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQVRERVILVGA--------------------LKSFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|391230864|ref|ZP_10267070.1| DNA-methyltransferase Dcm [Opitutaceae bacterium TAV1]
 gi|391220525|gb|EIP98945.1| DNA-methyltransferase Dcm [Opitutaceae bacterium TAV1]
          Length = 412

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 192/437 (43%), Gaps = 67/437 (15%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +DIF+G GGL+EG +Q+G S    + + +  A E F+ N PES     +       +
Sbjct: 15   LTCVDIFSGAGGLAEGFRQAGFSIVSGS-DIDSFASETFRFNFPESSFFEGD-------I 66

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             E  G  ++ + +++ A+                G++D + GGPPCQ FS  N   ++  
Sbjct: 67   AELSG--QEILQSTDIAD----------------GEIDCLIGGPPCQAFS-YNSHLRTHE 107

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
             +V   +   +L       PRY ++ENV   +S   G       + L E+GY+    I+ 
Sbjct: 108  GQV-AGLFREYLRLVGELNPRYLVMENVPGILSVGDGGVVGEIASRLGELGYETDGRIVY 166

Query: 1301 AGAFGVSQSRKRAFIWAAS----PHDTLP---EWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            A  +GV Q R+R  I+ AS    P +  P     P P  V            N       
Sbjct: 167  AEDYGVPQQRRR-MIFVASRIGLPANIFPVGTHGPSPKPV-----------SNEHVHRWD 214

Query: 1354 STANGAPFRAMTVRDTIGDLPA-VGNGASKTIMEYQNDPVSWFQKRIR-GNMAVLTDHIS 1411
                  P R + V   IGDLP  V        + Y+      FQ+  R G++ VL  H +
Sbjct: 215  PNPCDPPSRLVRVWSAIGDLPVTVSTTDESKALGYRTGAWCDFQRYAREGSLGVLNHHCA 274

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
              +   +L R   +P+  G  W D+P             L+P  +   A+  +  K  +G
Sbjct: 275  G-LGPNSLARISHVPQ--GGSWRDIPRH-----------LLPAGM-QRARTSDHTK-RYG 318

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL  +    T +T   P    G   HP++DR+LTVRE AR Q FPD + F G    ++R 
Sbjct: 319  RLAPKDLACTVLTKCDP--HWGCYIHPNEDRVLTVREAARLQSFPDRFNFIGPQLAQYRL 376

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GN+VPP LA ++ + +
Sbjct: 377  VGNSVPPLLARSIAQSI 393


>gi|420480501|ref|ZP_14979145.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1]
 gi|420510945|ref|ZP_15009434.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1b]
 gi|393098414|gb|EJB99006.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1]
 gi|393121453|gb|EJC21936.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-1b]
          Length = 351

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCIP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQMRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|330997449|ref|ZP_08321300.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
            11841]
 gi|329570823|gb|EGG52539.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
            11841]
          Length = 357

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 176/426 (41%), Gaps = 84/426 (19%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F GCGGLS+G +++G +     +++E+ A   F  NH        N  V LR    
Sbjct: 8    VVDLFCGCGGLSKGFEEAGYN-ILVGVDFEQSALNTFSYNH--------NGAVGLR---- 54

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                    +  SE     A +D  V   L     VD I GGPPCQGFS     N      
Sbjct: 55   --------LDLSEPESFDAIVDA-VDGRL-----VDIIIGGPPCQGFSLTGPRNIDDQRN 100

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
               ++ LA +     F+P+ FL+ENV    +   G      +    +MGY+V   I+ A 
Sbjct: 101  ---KLYLAMIETVRRFKPKAFLIENVPGMANLYGGAVKEEIIRRFTQMGYKVSCKIVCAA 157

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +GV Q RKR             E+P P            L DNY               
Sbjct: 158  DYGVPQIRKRLVFIGLRDSKASYEFPVPYR----------LPDNY--------------- 192

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
             +T  D I DLPA+ +   + + +Y+ +P++ FQK +RG    L +H +    +      
Sbjct: 193  -LTCEDAISDLPALVDTLGEEVGKYEMEPLNDFQKLMRGACTTLYNHTAINHKQFVKDVI 251

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
              +P   G ++ DLP    +  T  +     W   N+ K                  P  
Sbjct: 252  ALVPD--GGNYKDLPSGVGESRTFHMA----WTRLNSKK------------------PAR 287

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
              D    G   + FH   +R  TVRE AR Q FPD + F G+   +++Q+GNAVP  +A 
Sbjct: 288  TVD---TGHRNL-FHYKYNRCPTVRESARIQTFPDDFVFLGNRGQQNKQVGNAVPVLMAK 343

Query: 1543 ALGRKL 1548
            AL  KL
Sbjct: 344  ALATKL 349


>gi|421720709|ref|ZP_16159989.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R046Wa]
 gi|407219301|gb|EKE89118.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R046Wa]
          Length = 355

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSTGLEYLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I G PPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQKLE------------INMIIGEPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFGSDYLNPIQSNYQALMRKDSPKLYNHQATNHSQATLEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +G L+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGHLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|421713201|ref|ZP_16152532.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R32b]
 gi|407216567|gb|EKE86404.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R32b]
          Length = 351

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 184/423 (43%), Gaps = 89/423 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERDYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R F+  A                    LK      Y    +++         
Sbjct: 150  YGVPQIRERVFLVGA--------------------LKRFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGR 1546
            L +
Sbjct: 338  LAQ 340


>gi|420494407|ref|ZP_14992976.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-16]
 gi|393111208|gb|EJC11732.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-16]
          Length = 351

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 184/432 (42%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKEA-------KTILCDIMQL- 57

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                DC                   NLP +P  +D + GGPPCQ +S + +         
Sbjct: 58   ----DCY------------------NLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGA--------------------LKRFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSGSAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|420458340|ref|ZP_14957150.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-26]
 gi|393075861|gb|EJB76615.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-26]
          Length = 351

 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 186/431 (43%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G  +       WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSKHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLHC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|367031908|ref|XP_003665237.1| hypothetical protein MYCTH_2095291 [Myceliophthora thermophila ATCC
            42464]
 gi|347012508|gb|AEO59992.1| hypothetical protein MYCTH_2095291 [Myceliophthora thermophila ATCC
            42464]
          Length = 2146

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 201/465 (43%), Gaps = 89/465 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F G G    GL++ G     WA +  + A   +  N PE            +++
Sbjct: 1538 LRGMDLFCGSGNFGRGLEEGGAVEMLWANDIWDRAIHTYMANSPEP-----------KSI 1586

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                G  +D         L  +L      N+P PG+V+FI+ G PC GFS +   +++T 
Sbjct: 1587 KPFLGSVDDL--------LRRALQGKYAENVPRPGEVEFISAGSPCPGFSLLTP-DKTTL 1637

Query: 1241 SKVQCEMILA-FLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRF 1296
            ++V+ + ++A F SF D+++P+Y +LENV   V    N+ Q        +++ MGYQ + 
Sbjct: 1638 AQVKNQSLVASFASFVDFYRPKYGILENVVTIVQARHNRSQDVLSQLFCAIVGMGYQAQL 1697

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             + +A + G  Q R R F++ A+P   LP+ P             +LS ++ Y+ V S  
Sbjct: 1698 VLGDAWSHGAPQGRSRVFLYFAAPGLHLPDAP-------------LLSHSH-YAGVNSRG 1743

Query: 1357 NG---------------APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPV-SWFQKRIR 1400
             G                PF+ ++  +   DLP +G+G ++  + + +  V +    ++R
Sbjct: 1744 LGEMCNGEPFVSRSFQPTPFKYVSAAEGTSDLPLIGDGKAEPAVAFPDHRVCAGLTPKLR 1803

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWH------DLPDEKVKLSTGQVVDLIPW 1454
              +A +  H       ++  R           WH       L D  +  + G  V  I  
Sbjct: 1804 HQIAAIPTHPYG----MSFARA----------WHGGDGVMTLADRALFPADGARVSPI-- 1847

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQ 1513
                       W+    R+     F T  T  QP   + G   H   +R LTV+E  R+Q
Sbjct: 1848 --------SQGWR----RVRPGDVFQTVTTRSQPTDARAGTGLHWIDNRPLTVQEIRRAQ 1895

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            GFPD     G++  + + +GN+V   +A ALG + +EA     +T
Sbjct: 1896 GFPDQEVLLGTLADQWKLVGNSVARQMALALGLRFREAWARSSAT 1940


>gi|343520342|ref|ZP_08757311.1| DNA (cytosine-5-)-methyltransferase [Parvimonas sp. oral taxon 393
            str. F0440]
 gi|343397300|gb|EGV09834.1| DNA (cytosine-5-)-methyltransferase [Parvimonas sp. oral taxon 393
            str. F0440]
          Length = 599

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 190/431 (44%), Gaps = 83/431 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GGLS GL Q    +T  A +  + A + FK N+        N   IL      
Sbjct: 9    LDLFSGAGGLSCGLNQVQGFATVVANDINKFALDTFKHNNI-------NAECIL------ 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD      TSE  ++ + +++  I       +V+ I G PPC+ F+   +      S  
Sbjct: 56   -GDI-----TSE--KVKSKIEKKCIE-----LKVNMIVGEPPCKSFASTGK--GLALSDN 100

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  ++L F+       P  FL+ENV+N +S   G      + +   MGY V + IL+A  
Sbjct: 101  KNALLLDFIYMVRRLNPEIFLIENVKNIISATNGFFIDEIVKTFQLMGYNVEYCILDASD 160

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            FGV Q+R+RA I                    + + + ++ + Y              + 
Sbjct: 161  FGVPQNRERAVIIGCKDF--------------SFDFENLIREEY--------------KK 192

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            ++VR+ I DL  + +G    +  Y+N   S +QK +R    +L +HI+   ++ +L +  
Sbjct: 193  ISVREAISDLAFLESGEGNNLAVYKNFAESDYQKTLRNPEGILYNHIATNHSKNSLKKLS 252

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP  P  D   LP   ++L   Q                 ++K  + RL+W+   P   
Sbjct: 253  MIP--PEGDKSSLP---IELHGNQ-----------------KFKTTWSRLEWDKPSPAID 290

Query: 1484 T--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            T  D    GK     HP  +R +T RE AR Q FPDSY F GS     +QIGNAVPP  A
Sbjct: 291  TRFDTPSNGKNS---HPYLNRAITPREAARLQSFPDSYYFCGSKTEVCKQIGNAVPPFFA 347

Query: 1542 FALGRKLKEAV 1552
             A+G+ +   V
Sbjct: 348  KAIGKSIIRQV 358


>gi|373458182|ref|ZP_09549949.1| DNA-cytosine methyltransferase [Caldithrix abyssi DSM 13497]
 gi|371719846|gb|EHO41617.1| DNA-cytosine methyltransferase [Caldithrix abyssi DSM 13497]
          Length = 416

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 189/457 (41%), Gaps = 63/457 (13%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML------IN 1171
            ++    +++FAG GGLSEG  ++G     + IE +  A    K       +       I 
Sbjct: 2    DHKFTYIELFAGAGGLSEGFIRAGFRPV-FHIEMDRYAALTLKTRIAYHYLKGKGKIEIY 60

Query: 1172 NCNVILRA----VMEKCGDAE-DCVSTSEAAELAASLDENVINNLPLPGQVDFIN---GG 1223
            N  +  R     + +   D E D V   E  +        +I N  L   V  IN   GG
Sbjct: 61   NKYITGRITGDELYKYVPDYELDSVVNEEIRDDNVEKLFRIIKNHMLINNVSKINVIAGG 120

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            PPCQ +S + R       K      L   ++ F + F+P  F+ ENV   +S   G+ + 
Sbjct: 121  PPCQAYSIIGRARDPYRMKYDKRNYLYKLYVRFLNEFRPDVFVFENVPGLISAADGKLWE 180

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
                  +E GY++ F +L A  FGV Q+RKR  +           W + +          
Sbjct: 181  DVKKYFMESGYEIGFKLLNAHDFGVLQNRKRVIVIG---------WRKEL---------- 221

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW-FQKRIR 1400
                N +Y       N A F+   V D + DLP +  G   T+ +Y   P  + F   IR
Sbjct: 222  ----NLKYPEFSPDKNVAKFK---VHDILDDLPPLEPGERITVGKYIKPPSKYLFDYGIR 274

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                 L  HI++  NE    R +KI K    +W     EK +    +        LP   
Sbjct: 275  NGWNTLIQHIARGHNE----RDRKIYKFYIENWRK---EKRRPDYDE--------LPEEL 319

Query: 1461 KRHNQWKGLFGRLDW-EGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFP 1516
            K H   K    R      + P S T    + K G  F HPD  Q R ++VRE AR Q FP
Sbjct: 320  KTHKNRKVFRDRFKVVASDLPYSQTIVAHLAKDGHYFIHPDINQLRSISVREAARIQSFP 379

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            D++ F G +    RQIGNAVPP +A  +  K+KE ++
Sbjct: 380  DNFYFEGPMTEMFRQIGNAVPPLMAEKMAEKVKEMLK 416


>gi|420475342|ref|ZP_14974013.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-21]
 gi|393093449|gb|EJB94066.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-21]
          Length = 352

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 188/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +        L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQVRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|420395561|ref|ZP_14894788.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1124]
 gi|393013997|gb|EJB15171.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1124]
          Length = 352

 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 177/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELMWANDIDKDAILSYQANHKKT-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYINTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSSSTKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|258568064|ref|XP_002584776.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237906222|gb|EEP80623.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1033

 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 156/622 (25%), Positives = 250/622 (40%), Gaps = 127/622 (20%)

Query: 956  EGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSD 1015
            E ET+  G  V ++     +  EII        + +  +VKVR   R       + +  +
Sbjct: 452  EKETYNPGDTVLVETSEFLEPAEII--------DFQGNEVKVRVLPR-----RARDFGGN 498

Query: 1016 IR--EVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQ 1073
             R  E+ Y+E   L+  E I   C +R                 F+ E   D +      
Sbjct: 499  YRPNELVYTERFRLVHFEQIKRHCYIR-----------------FYSEQQRDSNT----- 536

Query: 1074 LPAHIKLRYSSGSLDSEAASRRKKGKCI--------EGEDELEVEKQGGASQENHLATLD 1125
            +PA      + G+          +G C          G D LE +++        L  L+
Sbjct: 537  IPAPYNRDGNGGAFYITCRESSTQGLCPMDPPPNFSHGFDPLEPKRR--------LRALN 588

Query: 1126 IFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL---MLINNCNVILRAVME 1182
            +F+G G    GL++     ++WA+E+       ++ NH  S    +   + N  L   ++
Sbjct: 589  LFSGGGSFDRGLEEGTAIRSEWAVEWGLDQMLTYRANHESSHDLKLFRGSVNDYLALALK 648

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              GD  D +     A+L               GQV+FI+GG PCQG+S  N    S  S 
Sbjct: 649  --GDKSDLI-----AKL---------------GQVEFISGGSPCQGYSLANPQKWSEMSL 686

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGILEA 1301
                MI + +++ D+++P Y +LENV    S  +K       + + + MGYQ+R   L+A
Sbjct: 687  RNSSMIASVVAYVDFYRPHYAILENVPAMASKTHKRNPLSQLICAFVGMGYQLRLMHLDA 746

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
             ++G  QSR R F+  A+P   LP+ P   H  + P+       N    ++    NG PF
Sbjct: 747  WSYGAPQSRSRLFLLIAAPGLELPDHPPLTH--SHPK-------NTTLRSLGEAPNGLPF 797

Query: 1362 ----------RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                      + ++  +   DLP +     ++I         W   R     A  T  I 
Sbjct: 798  GERRWDTPIFKFVSSLEGTRDLPDLQRAKVRSI--------PWPDHRSSRTEAHYTQAI- 848

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA-KRHNQWKGLF 1470
                        +IPK P A    LPD   K      ++  P+  PN   +R       +
Sbjct: 849  ----------IDQIPKYPRA--MGLPDAMAK----GYLNYDPY--PNEGLRRKTASSRAW 890

Query: 1471 GRLDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
             R++     PT  T+  P  K  G   H  ++R+LTV E  R+QG+PDS    G    + 
Sbjct: 891  SRVNPHLLIPTITTNISPSCKFTGRWLHWRENRLLTVMEARRAQGYPDSEVLVGRASSQW 950

Query: 1530 RQIGNAVPPTLAFALGRKLKEA 1551
            + +GN+V   +A ALG  ++EA
Sbjct: 951  KIVGNSVARQVALALGLSIREA 972


>gi|420449975|ref|ZP_14948841.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-45]
 gi|393069292|gb|EJB70090.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-45]
          Length = 348

 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 183/424 (43%), Gaps = 87/424 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + +  A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSIHPYFELIWANDIDRDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLNC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKL 1548
             + +
Sbjct: 339  AQAV 342


>gi|386745963|ref|YP_006219180.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            HUP-B14]
 gi|384552212|gb|AFI07160.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            HUP-B14]
          Length = 351

 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELVWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQMRERVILVGA--------------------LKSFEQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|419648632|ref|ZP_14179966.1| type II DNA modification methyltransferase [Campylobacter jejuni
            subsp. jejuni LMG 9217]
 gi|380626143|gb|EIB44638.1| type II DNA modification methyltransferase [Campylobacter jejuni
            subsp. jejuni LMG 9217]
          Length = 356

 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 183/432 (42%), Gaps = 84/432 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +   DIF G GGLS G   +   +  +A + ++ A +++ LNHP + +   N        
Sbjct: 1    MKVADIFCGAGGLSYGFSTNPFFNIVFANDIDKDAIKSYALNHPNTKVYHKNI------- 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                                + LDE  + N    G++D + GGPPCQ +S + +      
Sbjct: 54   --------------------SKLDEMEMLNF---GKIDLLLGGPPCQSYSTLGKRKMDE- 89

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   +L      QP+ F+ ENV   +S  KG+ F+       ++ Y V + IL 
Sbjct: 90   ---RANLFQEYLRVLKILQPKIFIFENVIGLLSMQKGELFKYICCQFKKINYVVDYSILN 146

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q R+R  I                          +  D Y  S +        
Sbjct: 147  AAFYGVPQIRERLIIVG------------------------IRQDIYYGSFIFPQKTHDK 182

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
            F  +++++ + DLP + +G +     Y+  P + F   +R +  +L +H S   N +NLI
Sbjct: 183  F--VSLKEALDDLPFIQSGENGNNKGYRFKPNNAFLSFVRKS-EILKEH-SSPKNNINLI 238

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R  +  K  G   + LP E ++  +G       +C  NT          + ++ W+   P
Sbjct: 239  RIMQTLKD-GESKNSLPLE-LQPKSG-------YC--NT----------YAKMWWDRPAP 277

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T IT          C HP   R L++RE AR Q FPD Y F+GS   K  QIGNAVPP L
Sbjct: 278  T-ITRNFATPSSSRCIHPRDSRALSIREGARLQSFPDDYIFYGSDTSKKLQIGNAVPPLL 336

Query: 1541 AFALGRKLKEAV 1552
            + AL   +K+ +
Sbjct: 337  SIALADAVKKYI 348


>gi|420432040|ref|ZP_14931059.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-16]
 gi|393049633|gb|EJB50599.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-16]
          Length = 351

 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLH-------YHNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQIRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNIFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ENLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|302656192|ref|XP_003019852.1| hypothetical protein TRV_06140 [Trichophyton verrucosum HKI 0517]
 gi|291183624|gb|EFE39228.1| hypothetical protein TRV_06140 [Trichophyton verrucosum HKI 0517]
          Length = 1085

 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 156/611 (25%), Positives = 234/611 (38%), Gaps = 105/611 (17%)

Query: 954  KAEGETFKAGRNVGLKPYVVCQLLEIIVPKE-----PKRAEVKSTQVKVRRFFRPDDISA 1008
            K   +TFKAG  V      + Q   ++ P E     P  A ++  Q + R     +    
Sbjct: 499  KTPTQTFKAGDTV------LAQFANLLKPAEIINIGPDEATLRVFQYR-RELGEKNCRPN 551

Query: 1009 EKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSK 1068
            E   C D R V  S          I   C +R    +   N P        C +  D   
Sbjct: 552  ELVLCDDFRTVPISR---------IKRHCHIRVFKPVQLPNIP--------CPYNRD--- 591

Query: 1069 GSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG----GASQENHLATL 1124
                            G+ D+   +  K G+ +E  +     KQG     +S  + L  L
Sbjct: 592  ----------------GTGDAFYITYAKNGENLEPMNSRPSFKQGFDPSASSSLHKLNAL 635

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            ++F+G G    GL++ G   +KWA+E+       ++ NHP+     N   +        C
Sbjct: 636  NLFSGGGTFDRGLEEGGAIESKWAVEWGLHQMLTYRANHPDG----NGLKLF-------C 684

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
            G   D +        A +  EN+   +   G   FI+ G PCQG+S  N    +  S   
Sbjct: 685  GSVNDYLFQ------AITGKENIY--VARIGDAHFISAGSPCQGYSSANAHKDNEVSMRN 736

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT-FRLTLASLLEMGYQVRFGILEAGA 1303
              MI +  S+ D ++P+Y +LENV    S    Q      L + + MGYQ R   L+A +
Sbjct: 737  SSMIASVASYIDLYRPQYAILENVAGMASRTHEQNPLSQLLCTFVGMGYQTRVFNLDAWS 796

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP-FR 1362
            FG  QSR R FI   +P   + E P   H          L DN   S         P F 
Sbjct: 797  FGAPQSRSRLFIAITAPGLHILEHPALTHSHPPGTKSRALGDNPNGSTFGERRWDTPVFE 856

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM-NELNLIR 1421
             ++ R    DLP +    +  IM      + W             DH S  + +E     
Sbjct: 857  FVSARSATQDLPPID---TARIMS-----IPW------------PDHRSSRVESEEKQAL 896

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
             Q IPK P          K +   G +       L ++A+        + R+  E  FP 
Sbjct: 897  IQNIPKYP----------KGQGLVGAIARGWVDPLEHSARMKAATSKAWSRIYPEKPFPA 946

Query: 1482 SITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
              T   P     G   H  +DR++TV+E  R+QG+PD+    GS   + + +GN+V   +
Sbjct: 947  VTTGVCPFCIFTGRWLHWQEDRLVTVQEVRRAQGYPDNEVLIGSPVQQWKIVGNSVARQV 1006

Query: 1541 AFALGRKLKEA 1551
            A ALG  ++EA
Sbjct: 1007 ALALGLVVREA 1017


>gi|413915570|emb|CCM44166.1| DNA-cytosine methyltransferase [Staphylococcus xylosus]
          Length = 348

 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 182/436 (41%), Gaps = 95/436 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +DIF+G GGLS G +  G   T  AI+    A E F  NH   +    + +      
Sbjct: 1    MKIIDIFSGAGGLSLGFESEGFE-TILAIDKWTDAIETFNKNHENKVGTTIDIHDFSNEY 59

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQS 1238
            +E+  D                            G +D I GGPPCQGFS  G    N  
Sbjct: 60   LEQYKD----------------------------GSIDGIIGGPPCQGFSLVGTRDTNDP 91

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
              S     + + ++ F    +P++F+LENV   +S  KG+     +     +GY V + +
Sbjct: 92   RNS-----LYIEYVRFVSVIKPKFFVLENVSGLLSLEKGKFKDDIIKRFEGLGYNVDYKL 146

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +GV QSRKR F                  VF          DN +   + ST+  
Sbjct: 147  LTASDYGVPQSRKRVFFVGLRK-----------DVFKDEYFNF---DNLELEEMVSTSKA 192

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH-ISKEM-NE 1416
                       + DLP     +SK  ++Y N P + +QK +R N  ++ +H I+K   N 
Sbjct: 193  -----------LSDLPQA--TSSKIGLDYINPPENKYQKYMRKNSNLIFNHEITKHTQNT 239

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            +++I    +P   G    DLP+E  K+                      +   F R++ +
Sbjct: 240  VDIISL--VPD--GGGIKDLPEEYYKIR--------------------NYNNAFKRMNSQ 275

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
               P+S  D          FH  ++R+ TVRE AR Q FPD Y F GS   ++ Q+GNAV
Sbjct: 276  A--PSSTIDCGHRN----YFHYSENRVPTVRESARIQSFPDWYIFKGSKTSQYTQVGNAV 329

Query: 1537 PPTLAFALGRKLKEAV 1552
            PP LA  + +++K  +
Sbjct: 330  PPLLAQKIAKEIKNTI 345


>gi|347836057|emb|CCD50629.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 1459

 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 197/453 (43%), Gaps = 72/453 (15%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLINNCNVILR 1178
            L  LD+F G G    GL++SG+   KWA++    A + +  N  +PE   L         
Sbjct: 701  LNGLDLFCGGGNFGRGLEESGVLHNKWAVDLFSAALQTYAANLKNPEKTDLY-------- 752

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                  G   D +S +       SL       +PLPG VD I  G PCQGFS MN    +
Sbjct: 753  -----FGSVNDLLSEAFVGN-PQSL------KIPLPGDVDVIMAGSPCQGFSRMNSNKGN 800

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG-----QTFRLTLASLLEMGYQ 1293
              S     +I +  ++ D+++P+Y LLENV N     KG           + +++ +GYQ
Sbjct: 801  DQSLRNQSLIASVAAYIDFYRPKYGLLENVLNMA--QKGLRRDEDVLSQLICTIVGLGYQ 858

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPE-----PMHVFAAPELKIMLSDNYQ 1348
            V+  +L++ +FG SQSR R F+  A+P     E PE     P HV      K+    ++ 
Sbjct: 859  VQLFLLDSWSFGSSQSRSRIFVSFAAPGCVPLEHPELSHSHPPHVGERGLGKLANGQSFG 918

Query: 1349 YSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN--DPVSWFQKRIRGNMAVL 1406
                  T    PF   T   ++ DLP +G+GA+    +Y +   P++   ++ R  +A +
Sbjct: 919  SRVHCPT----PFHYRTAEQSVADLPYIGDGATGHCTKYPDHVSPLT-LSRKYRSQIACI 973

Query: 1407 TDH-----ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK 1461
              H      SK  NE N I                        T +  DL P+   +   
Sbjct: 974  PTHPRGMSFSKTWNEGNGIM-----------------------TKEERDLFPYLAKSGRI 1010

Query: 1462 RHNQWKG--LFGRLDWEGNFPTS-ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
            R +   G   +GR+     FPT  +       ++G   H DQ R LT+ E  R+Q FPD 
Sbjct: 1011 RESVVTGSRAWGRIQPHKLFPTVLVVMNMEDSRMGTILHWDQHRRLTLLELRRAQSFPDD 1070

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
                G    + + IGN+V  T++ ALG  L++A
Sbjct: 1071 EVIIGRRGEQIKIIGNSVDRTVSMALGISLRKA 1103


>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
          Length = 587

 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 179/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTEIKEKVIKLAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE  R Q F D+Y F+G+     +QIGNAVP  LA A
Sbjct: 286  TRFDTPSN-GTNSHPELHRSITPREADRIQSFSDNYIFYGNKTSVCKQIGNAVPTLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|444301299|gb|AGD98765.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 354

 Score =  133 bits (335), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  +  +              
Sbjct: 6    LDLFCGAGGFSAGLEWLKEFDALIGLDCDKQALITFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            ++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQIEIKEKVIKLAQTLE------------INMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F+++NV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKALKPEIFIIKNVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV QSR+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQSRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + ++D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSKAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL W    PT I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLSWNKVSPT-I 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+  F+G+     +QIGNAVPP LA A
Sbjct: 285  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNNIFYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420435793|ref|ZP_14934792.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-27]
 gi|420492530|ref|ZP_14991104.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-15]
 gi|420506345|ref|ZP_15004860.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-74]
 gi|420526553|ref|ZP_15024954.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-15b]
 gi|393051652|gb|EJB52603.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-27]
 gi|393106969|gb|EJC07512.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-15]
 gi|393115850|gb|EJC16360.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-74]
 gi|393131858|gb|EJC32281.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-15b]
          Length = 351

 Score =  133 bits (335), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 179/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            G  Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GAPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|2832630|emb|CAA16759.1| putative protein [Arabidopsis thaliana]
 gi|7268696|emb|CAB78904.1| putative protein [Arabidopsis thaliana]
          Length = 1171

 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 11/205 (5%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG+V  I GGPPCQG SG NR     S  +  + + I+ F+   +Y +P Y L+ENV
Sbjct: 874  LPLPGRVGVICGGPPCQGISGYNRHRNVDSPLNDERNQQIIVFMDIVEYLKPSYVLMENV 933

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + +  +KG   R  L+ L+ M YQ R GI+ AG +G+SQ R R F+W A P+  LP +P
Sbjct: 934  VDILRMDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQFRSRVFMWGAVPNKNLPPFP 993

Query: 1329 EPMH-VFAAPELKIMLSDNYQYSAVRSTANGAPF---RAMTVRDTIGDLPAVGNGASKTI 1384
             P H V     L +    N     V + A G P    +A+ ++D I DLP V   ++++I
Sbjct: 994  LPTHDVIVRYGLPLEFERN-----VVAYAEGQPRKLEKALVLKDAISDLPHVCFISTRSI 1048

Query: 1385 MEYQNDPVSWFQKRIRGNMAVLTDH 1409
                     W+ + +   + V T H
Sbjct: 1049 CNSGPFARLWWDETVPTVLTVPTCH 1073



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 7/118 (5%)

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ-----PMGKVG 1493
            EK  +    + DL   C  +T    N   G F RL W+   PT +T P      P     
Sbjct: 1025 EKALVLKDAISDLPHVCFISTRSICNS--GPFARLWWDETVPTVLTVPTCHSQVPSKPFQ 1082

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
               HP+QDR+LT+RE AR QGFPD +QF G+I+ ++ QIGNAV  +++ ALG  L  A
Sbjct: 1083 ALLHPEQDRVLTIRESARLQGFPDYFQFCGTIKERYCQIGNAVAVSVSRALGYSLGMA 1140



 Score = 46.6 bits (109), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 5/51 (9%)

Query: 1121 LATLDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            L  LD+++GCGG+S GL    + SG+   TKWA++    A ++ KLNHP +
Sbjct: 676  LPVLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNT 726


>gi|217033040|ref|ZP_03438509.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298736593|ref|YP_003729119.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945239|gb|EEC23921.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298355783|emb|CBI66655.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 351

 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 185/431 (42%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G  +       WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSKHPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
             +   CVS                        ++ + GGPPCQ +S + +         +
Sbjct: 60   HNLP-CVS------------------------INILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERDYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIRERARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420487096|ref|ZP_14985704.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-8]
 gi|420520981|ref|ZP_15019412.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-8b]
 gi|393104649|gb|EJC05206.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-8]
 gi|393127568|gb|EJC28013.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-8b]
          Length = 351

 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 185/432 (42%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQAIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                                    +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 60   ------------------------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +                       LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGV--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYRFYGSASAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|85094494|ref|XP_959891.1| hypothetical protein NCU02247 [Neurospora crassa OR74A]
 gi|13936826|gb|AAK49954.1|AF348971_1 DNA methyltransferase Dim-2 [Neurospora crassa]
 gi|28921348|gb|EAA30655.1| predicted protein [Neurospora crassa OR74A]
          Length = 1454

 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 233/554 (42%), Gaps = 99/554 (17%)

Query: 1018 EVYYSEETHLIFVEAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            E+ Y+E+   +  E I GKC +R       +P+        ++FF  H            
Sbjct: 761  ELVYTEDLVDVRAERIVGKCIMRCFRPDERVPSPYDRGGTGNMFFITH------------ 808

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG----GASQENHLATLDIFAGC 1130
                               R+  G+C+  +      +QG    G   +  L  +D++ G 
Sbjct: 809  -------------------RQDHGRCVPLDTLPPTLRQGFNPLGNLGKPKLRGMDLYCGG 849

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++ G+   +WA +  + A   +  N P+     N  N  L       G  +D 
Sbjct: 850  GNFGRGLEEGGVVEMRWANDIWDKAIHTYMANTPDP----NKTNPFL-------GSVDDL 898

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
                    L  +L+    +N+P PG+VDFI  G PC GFS + + ++   ++V+ + ++A
Sbjct: 899  --------LRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSLLTQ-DKKVLNQVKNQSLVA 949

Query: 1251 -FLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFGILEAGAFGV 1306
             F SF D+++P+Y +LENV   V    N+ Q        +L+ MGYQ +  + +A A G 
Sbjct: 950  SFASFVDFYRPKYGVLENVSGIVQTFVNRKQDVLSQLFCALVGMGYQAQLILGDAWAHGA 1009

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHV-FAAPELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
             QSR+R F++ A+P   LP+ P P H  +      I    N +    RS    A F+ ++
Sbjct: 1010 PQSRERVFLYFAAPGLPLPDPPLPSHSHYRVKNRNIGFLCNGESYVQRSFIPTA-FKFVS 1068

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPV-SWFQKRIRGNMAVLTDH-----ISKEMNELNL 1419
              +   DLP +G+G     + + +  + S     IR   A +  H       K  N  N 
Sbjct: 1069 AGEGTADLPKIGDGKPDACVRFPDHRLASGITPYIRAQYACIPTHPYGMNFIKAWNNGNG 1128

Query: 1420 IRCQKIPKRPGADWHDLPDE-KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            +  +       +D    P E K + S   V                 WK    RL+ +  
Sbjct: 1129 VMSK-------SDRDLFPSEGKTRTSDASV----------------GWK----RLNPKTL 1161

Query: 1479 FPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            FPT  T   P   ++G   H D+DR  TV+E  R+QG+ D     G    + + +GN+V 
Sbjct: 1162 FPTVTTTSNPSDARMGPGLHWDEDRPYTVQEMRRAQGYLDEEVLVGRTTDQWKLVGNSVS 1221

Query: 1538 PTLAFALGRKLKEA 1551
              +A A+G K +EA
Sbjct: 1222 RHMALAIGLKFREA 1235


>gi|420482042|ref|ZP_14980679.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-2]
 gi|420512466|ref|ZP_15010949.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-2b]
 gi|393099276|gb|EJB99857.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-2]
 gi|393157529|gb|EJC57790.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-2b]
          Length = 351

 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 186/431 (43%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLNC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----VLKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|94263940|ref|ZP_01287743.1| DNA (cytosine-5-)-methyltransferase [delta proteobacterium MLMS-1]
 gi|93455685|gb|EAT05864.1| DNA (cytosine-5-)-methyltransferase [delta proteobacterium MLMS-1]
          Length = 366

 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 185/439 (42%), Gaps = 90/439 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +   D F GCGG S G Q++GI    +A++    A   F+ N P +     + N +    
Sbjct: 10   IVVFDFFCGCGGTSRGFQKAGID-VAFALDTGPDAKSTFERNFPGTFFCHKSINEL---- 64

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                 +A D     +A +    L                  G  PCQ F+   +F +   
Sbjct: 65   -----NASDLEPILQAHKNGYKL----------------FCGCAPCQPFT--RQFTERAK 101

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNF--VSFNKGQTFRLTLASLLEMGYQVRFGI 1298
            S  +  ++  F  F +  +P +  +ENV     V  +K   F   L  L+ +GY + +G+
Sbjct: 102  SDTKKNLLGQFGVFVERHEPDFVFVENVPGLQKVPKHKDGPFPAFLELLMGLGYHITYGV 161

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            + A  +G  Q R+R FI  AS H  +   P P H            +N +          
Sbjct: 162  VAAQDYGAPQLRRR-FILLASKHGEI-AIPPPTH-----------GNNRE---------- 198

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             P++  TVR  I DLPA+  G      E  NDP              L +H +  ++ELN
Sbjct: 199  NPYK--TVRHAIEDLPAIAAG------ETYNDP-------------KLPNHRASHLSELN 237

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR---HNQWKGLFGRLDW 1475
            + R +  P   G   +D P            +L P C   T K+   H      +GR+ W
Sbjct: 238  MRRIKASPHD-GGGRNDWPK-----------NLWPSCYTRTNKKGEVHPGHTDCYGRMWW 285

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +    T +T        G   HP QDR ++VRE AR QGF DS++F GSI    RQIGNA
Sbjct: 286  DKP-ATGLTTRCVSYSNGRFGHPVQDRAISVREAARLQGFDDSFEFTGSINSMARQIGNA 344

Query: 1536 VPPTLAFALGRKLKEAVES 1554
            VP  LA+A+G+   + +E+
Sbjct: 345  VPVDLAYAMGKHFVDHIEA 363


>gi|448549957|ref|ZP_21628562.1| DNA-cytosine methyltransferase [Haloferax sp. ATCC BAA-645]
 gi|445713005|gb|ELZ64786.1| DNA-cytosine methyltransferase [Haloferax sp. ATCC BAA-645]
          Length = 416

 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 180/442 (40%), Gaps = 67/442 (15%)

Query: 1124 LDIFAGCGGLSEGLQQ--SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            +D+F G GG + G +   S        ++ ++ A E F  NHP++ ++            
Sbjct: 2    IDLFCGTGGFTYGFETHPSDQFEVLLGLDKKDVATETFDRNHPKAEVV------------ 49

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
               GD                           P  VD I GGPPCQGFS +         
Sbjct: 50   --NGDIRKWTPERTTQHTGV-----------YPDDVDVIVGGPPCQGFSSIRPDRGDDVE 96

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              +  +   F+ +  +++P +F++ENV    +   G T    L     +GY   + IL  
Sbjct: 97   DERNGLYSDFIEYVSHYEPDFFIMENVVGLATHEDGDTISQILEDAKNIGYSADWRILNG 156

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              FG+ Q R+R  +  A+    + E+PEP H   A    I   D  +    + T +   F
Sbjct: 157  ANFGLPQRRERLIMIGAADEQDI-EFPEPTH--QANGRTIGYRDKTKVITTQPTLSN--F 211

Query: 1362 R-------AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
            R       A T+ D IGDLP +   A +  +EY   P + +Q  +R     LT H +   
Sbjct: 212  RDAEALPEARTIMDAIGDLPKL--EAGEEAIEYTEPPQNRYQAALRQGSERLTLHKATNH 269

Query: 1415 --NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
              N + +IR     K+          E +K S  +V D+  +     +  +++       
Sbjct: 270  GDNMMTIIRNSGPNKQTTI-------ENLKESD-EVDDVENYIKTGYSSSYSRLDADLPS 321

Query: 1473 LDWEGNF--PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            +    NF  P S            C HP+QDR LT RE AR Q FPD+++F GS      
Sbjct: 322  VTMTVNFIHPAS----------NKCIHPNQDRALTPREGARIQSFPDTFEFFGSRSDIVE 371

Query: 1531 QIGNAVPPTLAFALGRKLKEAV 1552
            QIGNAVPP     LGR L E V
Sbjct: 372  QIGNAVPP----LLGRVLAEHV 389


>gi|421714623|ref|ZP_16153944.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R036d]
 gi|407218308|gb|EKE88137.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R036d]
          Length = 351

 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 176/431 (40%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSVHSHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +                       LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGV--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP + +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPESLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420495802|ref|ZP_14994366.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-23]
 gi|393112113|gb|EJC12634.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-23]
          Length = 351

 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 179/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            G  Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GALQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|420485505|ref|ZP_14984123.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-4]
 gi|420515995|ref|ZP_15014458.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-4c]
 gi|420517700|ref|ZP_15016154.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-4d]
 gi|393103640|gb|EJC04203.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-4]
 gi|393123199|gb|EJC23668.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-4d]
 gi|393124294|gb|EJC24762.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-4c]
          Length = 351

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 185/431 (42%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLHC-------HNLPCV-SIDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGA--------------------LKSFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|385218742|ref|YP_005780217.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            Gambia94/24]
 gi|317013900|gb|ADU81336.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            Gambia94/24]
          Length = 351

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLH-------YHNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQIRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNIFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ENLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|254779148|ref|YP_003057253.1| type II cytosine specific DNA methyltransferase [Helicobacter pylori
            B38]
 gi|254001059|emb|CAX29005.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
            [Helicobacter pylori B38]
          Length = 348

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 176/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E   ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSVHSHFELIWANDIDKDAILSYQANHKEVQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                                    +NLP    +D + GGPPCQ +S + +         +
Sbjct: 60   ------------------------HNLPRVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQVRERVILVG-----VLKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP + +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPESLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDDYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
             +
Sbjct: 339  AQ 340


>gi|315917412|ref|ZP_07913652.1| cytosine specific DNA methyltransferase [Fusobacterium gonidiaformans
            ATCC 25563]
 gi|313691287|gb|EFS28122.1| cytosine specific DNA methyltransferase [Fusobacterium gonidiaformans
            ATCC 25563]
          Length = 358

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 183/443 (41%), Gaps = 104/443 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES------LMLINNCN 1174
               +D+F+G GGLS+G   +G       I++++ A + F+ NH ++      L  ++N N
Sbjct: 9    FTVIDLFSGAGGLSKGFLDAGFDVI-LGIDFDDSALKTFENNHGKAKALKLDLFNLDNIN 67

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
             I+                SE      +LD  V              GGPPCQGFS   +
Sbjct: 68   YII----------------SEFGREHNTLDVLV--------------GGPPCQGFSLAGK 97

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
              +     +   +  A +  A+  +PR  +LENV   ++   G   +       ++GY++
Sbjct: 98   REEDDKRNM---LYKAMVKLAERMKPRAVVLENVPGMLTLYDGAGKKRIFNDFEKLGYKM 154

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
               +L A  +GV Q RKRAF            +PEP          I+ S+N+       
Sbjct: 155  SVKVLYAPEYGVPQIRKRAFFVGLLNSKEGFTFPEP----------ILSSENF------- 197

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                     +T  D IGDLP++       I EY+  P + +Q  +R N   L ++I    
Sbjct: 198  ---------VTCEDAIGDLPSLEGIYGDEIQEYECSPQTKYQAEMRKNSTKLYNNIGTIH 248

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDE-----KVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
            +   +     +P+  G ++  LP+E     K   +  +     P    NT  R +     
Sbjct: 249  SSKTVKMISLVPE--GKNYKALPEEYRNMYKYNEALTRYHSKKPSLTINTGHRSH----- 301

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
                                      FH   +RI TVRE AR Q FPD + F+G+   ++
Sbjct: 302  --------------------------FHYKYNRIPTVRESARLQSFPDDFIFYGNKSEQY 335

Query: 1530 RQIGNAVPPTLAFALGRKLKEAV 1552
            +Q+GNAVPP L +A+ +KLK+ +
Sbjct: 336  KQVGNAVPPKLGYAIAKKLKDYL 358


>gi|420477123|ref|ZP_14975783.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-23]
 gi|393093971|gb|EJB94584.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-23]
          Length = 352

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 188/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCIP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERDYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A     L  + +  H F  P +K   S                   
Sbjct: 150  YGVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS------------------- 183

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 184  --LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|330927820|ref|XP_003302014.1| hypothetical protein PTT_13685 [Pyrenophora teres f. teres 0-1]
 gi|311322847|gb|EFQ89880.1| hypothetical protein PTT_13685 [Pyrenophora teres f. teres 0-1]
          Length = 1252

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 191/460 (41%), Gaps = 82/460 (17%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E  L  L IF+G G L  GL++ G      A+++   A    + N  +   L   C  + 
Sbjct: 651  EGTLRGLSIFSGGGSLDRGLEEGGAVKIHTAVDFSSEACHTQRANAKDPGGLHIYCGSV- 709

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                    D  D V T +  +L A +           G+VD I  G PC GFS + R  +
Sbjct: 710  -------DDYLDAVLTRKDQKLIARV-----------GEVDLIVAGSPCPGFSSLQRNWK 751

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG----QTFRLTLASLLEMGYQ 1293
            S  S      I  F SF D ++P Y +LENV N  S  KG          +ASL+ MGYQ
Sbjct: 752  SPQSLCNASHISTFCSFVDVYRPLYGILENVVNMSSTRKGYENQNVLSQVVASLVSMGYQ 811

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            V   I++A  +   Q R R  +  A+PH  L    +P H             +++Y+  R
Sbjct: 812  VNQYIMDAWCYSSKQQRSRIVLTIAAPH--LNPIQQPWHTH---------RRSHEYTRGR 860

Query: 1354 STA---NGAPFRAMTVRDT----------IGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
                  NG PF       T             LP +GN   +T + + +  +     R  
Sbjct: 861  CLGRLLNGEPFGQREYYPTPFAHVPAGAVSSGLPNIGNSLVQTCIPFPDHRLPAPSTR-- 918

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
                          NE  L+ C  IPK P G  +++   E++ L            +P +
Sbjct: 919  --------------NERALLTC--IPKNPPGCGYNEA--ERLGL------------IPES 948

Query: 1460 AKRHNQWKG-LFGRLDWEGNFPTSITDPQPMGKV-GMCFHPDQDRILTVRECARSQGFPD 1517
             K+ N+  G  + R+   G  PT  T      K  G   H DQDR +++ E  R+QG+PD
Sbjct: 949  LKKPNRSDGKSYARIKEAGLVPTITTRVMMRDKYNGASVHWDQDRSISILEARRAQGYPD 1008

Query: 1518 SYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
                 G+++ +++ IGN V   +AFA+G  L +A+E   S
Sbjct: 1009 DEPIIGNLKEQYKIIGNGVDRKVAFAIGLSLSQAMEKNAS 1048


>gi|420502448|ref|ZP_15000989.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-41]
 gi|393153728|gb|EJC54021.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-41]
          Length = 351

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 187/432 (43%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQIRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|428219888|ref|YP_007083360.1| DNA-cytosine methyltransferase [Pseudanabaena sp. PCC 7367]
 gi|427992231|gb|AFY71924.1| DNA-cytosine methyltransferase [Pseudanabaena sp. PCC 7367]
          Length = 413

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 178/435 (40%), Gaps = 107/435 (24%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E   + LD+FAGCGG++ GL++SG       +E +  A +  + N   + ++        
Sbjct: 3    ETMFSCLDLFAGCGGMALGLKRSGFDHA-CLVEIDRQAAQTLRANFDPATIV-------- 53

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                       D +  +     A              GQ+D ++ GPPCQ FS     NQ
Sbjct: 54   ---------EADIIKLNREGYFAQ-----------FRGQIDLLSAGPPCQSFSYAG--NQ 91

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
                  + +++   L   +  QP+  L+ENV++  + N G+  +  L  L  + Y+ ++ 
Sbjct: 92   RGLDDSRGQLVYETLKTIEQVQPKMVLIENVKHLSTINSGKVLKAILGRLHSLRYRTQWQ 151

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            IL A  +GV+Q+R+R  I A     T   W           +K+     Y Y  V     
Sbjct: 152  ILNANDYGVAQNRQRLIILA-----TRKGW----------RIKLRYPAKYAYKPV----- 191

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                    +RD +   PA  +GA  +                           +++   L
Sbjct: 192  --------LRDALHGCPA-SDGAQYS---------------------------TEKAKVL 215

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
            +L+        PG  W  LP +  K   G+  D          KR     G+  RL W  
Sbjct: 216  DLVP-------PGGCWQALPGDIQKQYMGKSFD------AEGGKR-----GMARRLAWHE 257

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T +  P    +   C HPD  R LTVRE AR QGFPDS+ F GS+  ++RQIGNAVP
Sbjct: 258  PSLTLLCSP-AQKQTERC-HPDYTRPLTVREYARIQGFPDSFVFTGSVCSRYRQIGNAVP 315

Query: 1538 PTLAFALGRKLKEAV 1552
              LA A+G+ +  A+
Sbjct: 316  VDLAEAIGKSIISAI 330


>gi|420473869|ref|ZP_14972547.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-19]
 gi|393090997|gb|EJB91630.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-19]
          Length = 351

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 185/432 (42%), Gaps = 89/432 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPHFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQVRERVILVGA--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +  +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSSENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G +  DLP E ++  +G                   +   + ++ WE   PT I
Sbjct: 240  QTLKD-GQNKDDLP-ESLRPKSG-------------------YTNTYAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSVA 337

Query: 1544 LGRKLKEAVESK 1555
            L   + + +  K
Sbjct: 338  LAHAVFDFLRGK 349


>gi|407928299|gb|EKG21159.1| hypothetical protein MPH_01515 [Macrophomina phaseolina MS6]
          Length = 1010

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 196/458 (42%), Gaps = 71/458 (15%)

Query: 1113 GGASQENH--LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
            G A+   H  +  LD FAG G    GL+       ++AI+  + A   +K N    L   
Sbjct: 504  GNAADLPHPPMVGLDAFAGGGNFGRGLEDGAAVQFRYAIDCAKNAVLTYKAN----LSGQ 559

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
              C V   +V +   +A D  +    A++               G +DFI  G PCQGFS
Sbjct: 560  EPCWVYWGSVNDYLREAMDGNNDDYFAQV---------------GSIDFIAAGSPCQGFS 604

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ--TFRLTLASLL 1288
             + R   S  S     MI +  +F D+++P+Y LLENV       + Q   F   L +L+
Sbjct: 605  VLQRDKSSESSLRNISMIASVAAFIDFYRPKYALLENVVAMAHRGREQLGIFPQLLCTLV 664

Query: 1289 EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE------LKIM 1342
             +GYQV    L+A +FG  Q R R F+  A+P   L   P P    + P       L   
Sbjct: 665  GLGYQVSQHYLDAWSFGDPQRRSRLFVAIAAP--GLTPMPPPTITHSHPRGTPAVALGRN 722

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN-----DPVSWFQK 1397
            L++N ++   R      PF  ++V  ++GDLP VG+  S+T + Y +     +  +W ++
Sbjct: 723  LANNLRFGERR--FGPTPFEYISVEQSMGDLPDVGDSHSQTCIPYPDHRTVANEAAWVRE 780

Query: 1398 RIRGNMAVLTDHI---SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
             +R        HI         +  I  Q +P  P AD +      +K+S G        
Sbjct: 781  MMR--------HIPIYPSGQGAMRAILDQVMPG-PLADRYLTSGSALKISAGS------- 824

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKV-GMCFHPDQDRILTVRECARSQ 1513
                       W  + G    +G   T  T P     + G   H  Q R LT+RE  R+Q
Sbjct: 825  ---------QSWSRVCG----DGLTNTITTAPVASCAINGRVLHWRQHRALTIREARRAQ 871

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            GF D     G+ + + + IGN+V  ++A ALG  L+EA
Sbjct: 872  GFDDGDVITGTSKEQWKIIGNSVSRSVALALGMALQEA 909


>gi|420410013|ref|ZP_14909156.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4200]
 gi|393028326|gb|EJB29412.1| cytosine-specific methyltransferase [Helicobacter pylori NQ4200]
          Length = 351

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 179/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKET-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +                       LK      Y    +++          
Sbjct: 151  GVPQVRERVILVGV--------------------LKSFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|385220298|ref|YP_005781770.1| type II DNA modification [Helicobacter pylori India7]
 gi|317009105|gb|ADU79685.1| type II DNA modification [Helicobacter pylori India7]
          Length = 348

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 183/423 (43%), Gaps = 89/423 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +                       LK      Y    +++         
Sbjct: 150  YGVPQIRERVILVGV--------------------LKSFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G +  DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQNKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSVA 337

Query: 1544 LGR 1546
            L +
Sbjct: 338  LAQ 340


>gi|315222621|ref|ZP_07864510.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
 gi|315188307|gb|EFU22033.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
          Length = 417

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 202/448 (45%), Gaps = 76/448 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL-NHPESLMLINNCNVILRA 1179
            L  +D+F+G GGL+EG +     +    IE ++ A  + +L N    L   NN +     
Sbjct: 2    LNIVDVFSGAGGLTEGFRYKDYYNFICHIEMDKDACSSLELRNIYYYLKKENNLSPYFEY 61

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN------------GGPPCQ 1227
            +  K   + D + +    +L   +    I+   +P   +FI+            GGPPCQ
Sbjct: 62   IQGKI--SRDDLYSIIPRDLTKDILNKEISKDTIPSIFEFIDQRLGNNKLDGIIGGPPCQ 119

Query: 1228 GFSGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
             +S + R N  +       + L   +L F D ++P++F+ ENV+  +SF K  +  L L 
Sbjct: 120  AYSTIGRANNKSKKSTDKRIYLYKHYLDFLDKYKPKFFVFENVKGLLSF-KDLSGELLLP 178

Query: 1286 SLL----EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
             ++    + GY+V + I++A  +G+ Q R+R  +                        K 
Sbjct: 179  KIICEFDKCGYEVDYQIVDASNYGIVQKRERLILVGHR--------------------KD 218

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF-QKRIR 1400
            ++ DN  +  +      AP    T+++   DLP++ +G S    +Y+ D  S F +K IR
Sbjct: 219  LVFDNSFFDCLAEYVEVAP----TIKELFEDLPSIKSGGSS--HKYRCDVSSQFVEKYIR 272

Query: 1401 GNMAVLTDHISKEMNE--LNLIRCQKIPKRPGAD--WHDLPDEKVKLSTGQVVDLIPWCL 1456
                +LT H ++  NE  L + +     K+ G +  + D+P+E   L T           
Sbjct: 273  KKDGILTQHTARPHNENDLKIYKLVLKAKKKGKNLRYIDIPEE---LQTHS--------- 320

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQ 1513
             NT    +++K L    D+      S T    + K G  + HPD  Q+R +TVRE AR Q
Sbjct: 321  -NTTSFLDRYKAL----DYGS---VSHTVVAHIAKDGHYYIHPDLRQNRSITVREAARIQ 372

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            GFPD + F  S     +QIGNAVPP L+
Sbjct: 373  GFPDDFYFEHSRTAAFKQIGNAVPPILS 400


>gi|347726866|gb|AEP19811.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 355

 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 179/429 (41%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G  G S GL+          ++ ++ A  +++ NH  ++ +              
Sbjct: 6    LDLFCGAVGFSAGLESIEEFDALIGLDCDKQALISWENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDDTQTEIIEKVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG            +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVRAIKPEIFIIENVKNLISCAKGYFLEEIKERFKALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W  N PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKNRPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HP+  R +T RE AR Q F D+Y F+ +     +QIGNAVPP L  A
Sbjct: 286  TRFDTPSN-GTDSHPELHRSITPREAARIQSFSDNYIFYANKTSVCKQIGNAVPPLLGLA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 345  LGKAILKSL 353


>gi|448326112|ref|ZP_21515482.1| DNA-cytosine methyltransferase [Natronobacterium gregoryi SP2]
 gi|445613246|gb|ELY66954.1| DNA-cytosine methyltransferase [Natronobacterium gregoryi SP2]
          Length = 354

 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 145/337 (43%), Gaps = 56/337 (16%)

Query: 1217 VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK 1276
            +D + GGPPCQGFS          S  +  +   F+S+ +  +P+  L ENVR   +   
Sbjct: 27   IDLVAGGPPCQGFS---EVVSPDGSDDRNHLFTNFISWVNELEPKAALFENVRGIQNTAG 83

Query: 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
            G+       S   +GY V   ++ +  FGV Q R+R  +  A+  D         H F  
Sbjct: 84   GKFLEAVEKSFDLIGYDVTHRVINSSDFGVPQHRRR-LVAIATRKDVR------EHPFDG 136

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
             EL                    P     V D IGDLP VG G  + I EY  +P +  Q
Sbjct: 137  FELN-------------------PVETPGVMDGIGDLPEVGPG--EEITEYDTEPRTLLQ 175

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
            K +R     L+ HI+   ++  +     IP   G +   +PDE                L
Sbjct: 176  KDLRNGSDELSHHIAASHSQDMVEMISHIPD--GGNRTAIPDE----------------L 217

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFP-TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
              ++  HN +  L      + + P  +IT          C HP QDR LT RE AR Q F
Sbjct: 218  QPSSGYHNSYSRL------KSDEPAVAITSNMSKPSSARCIHPFQDRGLTPREGARLQTF 271

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            PD+Y+F G +    +QIGNAVPP L  ALG  L+E+V
Sbjct: 272  PDTYRFDGGLVSVRQQIGNAVPPYLGEALGYYLRESV 308


>gi|420398545|ref|ZP_14897758.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1962]
 gi|393015219|gb|EJB16390.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1962]
          Length = 352

 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 177/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKKT-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERDYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A     L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVGA-----LKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKHLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|340518715|gb|EGR48955.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1044

 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 142/557 (25%), Positives = 227/557 (40%), Gaps = 91/557 (16%)

Query: 1018 EVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQH-----IFFCEHLHDPSKGSLK 1072
            E+ YSE+T  +  + I G C VR   D      P  + H     +F+  H    + G   
Sbjct: 551  ELVYSEQTCKVSRDRIMGPCSVRCFRD--GEMIPTPYDHDGTGNLFYITHRQVAANGHSV 608

Query: 1073 QLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGG 1132
             +P           LD   +S +      +G D L+  ++        L  +D+F G G 
Sbjct: 609  YVP-----------LDEAPSSLQ------QGFDPLQKLQK--------LRGMDLFCGGGN 643

Query: 1133 LSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVS 1192
               GL+  G    KWA +Y+  A   +  N       + N     + V    G  +D   
Sbjct: 644  FGRGLEDGGGIEMKWANDYDSKAIHTYMAN-------VKNP----QDVHPFLGSIDDLQR 692

Query: 1193 TSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFL 1252
             +   + A        +N+PL G VDF++GG PC GFS +     +   +    ++ AF 
Sbjct: 693  LAIQGDFA--------DNVPLIGDVDFVSGGSPCPGFSRLTNDKTTAAQRKNQSLVAAFA 744

Query: 1253 SFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGILEAGAFGVSQS 1309
            SF D ++P+Y +LENV   V     +    F   + +L+ +GYQ +F  L+A + G  Q 
Sbjct: 745  SFVDLYRPKYGVLENVPGMVHKKHDRDRDVFSQLICALVGLGYQTQFFYLDASSCGSPQR 804

Query: 1310 RKRAFIWAASPHDTLPEWPEPMHVFAAP----ELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
            R R FI  A+P   LP+  +P+   + P    E  I    N Q+ A R      PF+ ++
Sbjct: 805  RSRIFIVFAAPGLELPD--KPVQTHSHPPNTREHGIGWLPNGQHMASREMPAATPFKFVS 862

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK-EMNELNLIRCQK 1424
              +   DLP + +      + +                    DH S   M++L   R   
Sbjct: 863  AEEATADLPPIYDAKPDICVPF-------------------PDHRSTLGMSDLLRARISV 903

Query: 1425 IPKRP-GADWHD--LPDEKVKLSTGQVVDLIPWCLPNTAKRH-----NQWKGLFGRLDWE 1476
            IP RP G ++      + KV  S+        + +    +         +   +GR+   
Sbjct: 904  IPTRPWGMNFSQAWFGERKVGGSSTMTAAEREFFIGTKGEGKQPMSVQPYSNSYGRMFPN 963

Query: 1477 GNFPTSITDPQPMG--KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
              F T +T  Q +G  K G   H  ++R +T+ E  R+QGF D     G    ++R +GN
Sbjct: 964  RLFETVVTR-QTLGDAKNGRLLHWRENRPVTIMEARRAQGFLDEDVLLGDPPTQYRIVGN 1022

Query: 1535 AVPPTLAFALGRKLKEA 1551
            +V    A ALG   +EA
Sbjct: 1023 SVARQPAVALGVTFREA 1039


>gi|392331194|ref|ZP_10275809.1| DNA-cytosine methyltransferase [Streptococcus canis FSL Z3-227]
 gi|391418873|gb|EIQ81685.1| DNA-cytosine methyltransferase [Streptococcus canis FSL Z3-227]
          Length = 411

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 203/456 (44%), Gaps = 68/456 (14%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEA-------FKLNHPESLMLIN- 1171
            H   +DIF+G GGL+EG + S     K  IE +  A +        + L     L L N 
Sbjct: 3    HYNIIDIFSGAGGLTEGFRDSSFEIVKH-IEKDVAASKTLLLRDIFYYLQQSNKLYLYNE 61

Query: 1172 --NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
              N  +    ++++       ++ +   E+     + + N + +      I GGPPCQ +
Sbjct: 62   YLNNKITFDNLLKQT--PHKVLNKTLNIEIGDDTIDFIFNQIGVKSITGII-GGPPCQAY 118

Query: 1230 SGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTL 1284
            S + R    +       + L   ++ F   ++PR+F+ ENV+  +SF   N    F +  
Sbjct: 119  STIGRAANRSKKDTDNRIYLYRYYIEFLRKYRPRFFVFENVKGLLSFRDTNGHLLFPMMQ 178

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
                E+GY + + ++    +G+ Q R+R  I+   P+D+     E +  F          
Sbjct: 179  EEFREIGYSIDYRLVNTADYGIPQRRERIIIFGV-PNDS----SELIEKF---------- 223

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA 1404
                + A++S       + ++VR  + DLP +  G  K   +YQ++P  + +K  R N +
Sbjct: 224  ----FDALQSKKE----QPISVRTALSDLPQLSQGQEKN--QYQHNPNDYVRKHFRKNPS 273

Query: 1405 V-LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD--LIPWCLPNTAK 1461
            + LT ++++   E++L    KI K        L   K K      +D  LI      T K
Sbjct: 274  ILLTQNVARPHREIDL----KIYKEVA-----LARSKGKRLKYNELDRSLI------THK 318

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDS 1518
              +++   F  LDW     T +     + K G  + HPD  Q+R +TVRE AR QGFPD 
Sbjct: 319  HTDKFLDRFKALDWNQPAHTVVAH---IAKDGHHYIHPDIKQNRSITVREAARLQGFPDD 375

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
            + F  S      QIGNAVPP L+  + + +K A+ +
Sbjct: 376  FYFESSRTSAFTQIGNAVPPILSEKIAQAIKIAINN 411


>gi|384895833|ref|YP_005769822.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
 gi|315586449|gb|ADU40830.1| possible DNA (cytosine-5-)-methyltransferase [Helicobacter pylori
            35A]
          Length = 351

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 173/420 (41%), Gaps = 87/420 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH ++         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSMHPHFELIWANDIDKDAILSYQANHRKT-------QTILCDIMQLN 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CVS                        +D + GGPPCQ +S + +         +
Sbjct: 59   CHNFPCVS------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +        L  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----VLKSFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 241  T-----------------LKDGQSKD----DLPKNLRPKSGYTNTYAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSSSTKRLQIGNAVPPLLSVAL 338


>gi|420466783|ref|ZP_14965540.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-9]
 gi|393085181|gb|EJB85869.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-9]
          Length = 351

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 183/425 (43%), Gaps = 89/425 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++    V   C
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKEAQTIL--CDI----VQLHC 59

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                                    +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 60   ------------------------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAA 337

Query: 1544 LGRKL 1548
            L   +
Sbjct: 338  LAHAV 342


>gi|60202519|gb|AAX14651.1| BbvCI methyltransferase 2 [Brevibacillus brevis]
          Length = 396

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 190/455 (41%), Gaps = 97/455 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
               LDIFAGCGG S GL Q+G   T  A+E +  A E ++ NH        N N++    
Sbjct: 3    FVALDIFAGCGGFSSGLIQAGHEVTS-ALEIDSWAAETYQFNH-------RNVNLL---- 50

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                   ED ++  ++     +  +          +V+ + GGPPCQGFS         +
Sbjct: 51   ------TED-ITKVDSTYFKVNFKD----------RVNLVVGGPPCQGFSVSGPRQYGVY 93

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN---KGQTFRLTLASLLEMGYQVRFG 1297
             K +  ++  ++      +P YF+LENVR F +     + +     LA L E+GY V   
Sbjct: 94   KK-ENALVAEYIRVIKAVEPEYFILENVRGFTTATIEGRIKALNFLLAELREIGYHVYHD 152

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            +L+A  +GV Q R R F+   S H     +P   H                  ++  T +
Sbjct: 153  VLQAADYGVPQLRSRLFV-VGSRHPIANPFPNKTH------------------SLNGTQH 193

Query: 1358 GAPFRAMTVRDTIGDLPAVGNG-ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
              P+  +++ + IGDLP +     +  +++Y  +P + FQ+ +R     + +H + + + 
Sbjct: 194  LRPY--LSIMEAIGDLPIINACEGTDNLVQYSLEPQNDFQQAMRNGSLGVYNHEAMKHSA 251

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
              + R   I  +PG   + L   K K +   V         N  +  +    L    +W+
Sbjct: 252  RIVERFATI--QPGGSGYKLGTVKGKDAPETVYK------SNNQRLISDQPALCITANWQ 303

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG------------- 1523
             ++                 HP  +R LTVRE AR Q FPDSY F G             
Sbjct: 304  SSY----------------IHPLLNRNLTVREAARIQTFPDSYVFKGKRAVPSASLLRKL 347

Query: 1524 -----SIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 +   +  Q+GNAVPP LA  +  +L  AVE
Sbjct: 348  GRDDENFLSQCHQVGNAVPPLLAKQIFERLSVAVE 382


>gi|414079711|ref|YP_007001135.1| DNA-cytosine methyltransferase [Anabaena sp. 90]
 gi|413972990|gb|AFW97078.1| DNA-cytosine methyltransferase [Anabaena sp. 90]
          Length = 390

 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 187/460 (40%), Gaps = 109/460 (23%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N    + +F G  GL  GL+Q+G  +    +E ++ A +   LN P         + I R
Sbjct: 4    NQPICISLFTGAYGLDLGLEQAGFHTVS-VVEKDKDAVKTIALNRPYL-----QESAIPR 57

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
              +EK    E          L  +L         LPG++D + GGPPCQ FS   +  + 
Sbjct: 58   E-LEKVTSQELLEEGGRVLNLGRAL---------LPGEIDLVTGGPPCQPFSTAGK--RG 105

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-------FNK--------------G 1277
            +    +  + + F+      QPR+FL+ENVR  +S        N+              G
Sbjct: 106  SVMDPRGSLFMDFIRIVKEVQPRFFLMENVRGLLSAFLRHRPINQRGKDYPALGLDEMNG 165

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP 1337
               ++ LA + E+GY V + +LEA  +GV Q+R R     +   +T              
Sbjct: 166  AALKVVLAEMKELGYNVVYNLLEAADYGVPQNRYRVVFIGSRDGETA------------- 212

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPF-RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
                       +   + + +G    +  T++D + D            ++ Q + +S+ +
Sbjct: 213  ----------TFPLAKYSKDGKILPKWRTLKDALTDF-----------VDIQPEFISYSE 251

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
             R++                L L+         G +W +LP+E           L P  +
Sbjct: 252  NRLK---------------FLRLLAA-------GQNWKNLPEE-----------LQPEAM 278

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
                       G + RL W+   PT  T PQ      MC HP + R LTVRE A+ Q FP
Sbjct: 279  GGAYNSGGGKVGFYRRLSWDKPSPTITTSPQ-QKATDMC-HPVELRPLTVRESAKIQTFP 336

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            D + FHGSI  K++QIGNAVP  LA  LG  L  +++  +
Sbjct: 337  DDWIFHGSISSKYKQIGNAVPVLLAKELGEYLINSMQGNQ 376


>gi|420488940|ref|ZP_14987537.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-11]
 gi|393107690|gb|EJC08230.1| cytosine-specific methyltransferase [Helicobacter pylori Hp P-11]
          Length = 351

 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 187/435 (42%), Gaps = 95/435 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G G LS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGELSYGFSTHSYFELIWANDIDKDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPE---WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            +GV Q R+R  +     H +  +   +P+P+                             
Sbjct: 150  YGVPQIRERVILVGI--HKSFKQKFHFPKPIKT--------------------------- 180

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI
Sbjct: 181  --HFSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLI 236

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            +  +  K  G    DLP E ++  +G +         NT          + ++ WE   P
Sbjct: 237  KIMQTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAP 275

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T IT          C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L
Sbjct: 276  T-ITRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLL 334

Query: 1541 AFALGRKLKEAVESK 1555
            + AL   + + +  K
Sbjct: 335  SAALAHAVFDFLRGK 349


>gi|385229774|ref|YP_005789690.1| type II DNA modification methyltransferase [Helicobacter pylori
            Puno135]
 gi|344336212|gb|AEN18173.1| type II DNA modification methyltransferase [Helicobacter pylori
            Puno135]
          Length = 351

 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 181/423 (42%), Gaps = 89/423 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E   ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSVHSHFELIWANDIDKDAILSYQANHKEVQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                        A+L         +NLP +P  +D + GGPPCQ +S + +         
Sbjct: 55   ------------AQLHC-------HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE---- 89

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  
Sbjct: 90   KANLFKEYLRLLDLVKPKMFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R  +  A                    LK      Y    +++         
Sbjct: 150  YGVPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH-------- 181

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  
Sbjct: 182  FSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIM 239

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
            +  K  G    DLP E ++  +G +         NT          + ++ WE   PT I
Sbjct: 240  QTLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-I 277

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T          C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ A
Sbjct: 278  TRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSASAKRLQIGNAVPPLLSAA 337

Query: 1544 LGR 1546
            L  
Sbjct: 338  LAH 340


>gi|326485515|gb|EGE09525.1| DNA methyltransferase Dim-2 [Trichophyton equinum CBS 127.97]
          Length = 1090

 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 180/434 (41%), Gaps = 51/434 (11%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L++F+G G    GL++ G   +KWA+E+       ++ NHP++           + +
Sbjct: 637  LKALNLFSGGGTFDRGLEEGGAIESKWAVEWGLQQMLTYRANHPDA-----------KGL 685

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
               CG   D +        A +  EN    +   G V FI+ G PCQG+S  N   ++  
Sbjct: 686  KLFCGSVNDYLFQ------AITGKENTY--VARIGDVHFISAGSPCQGYSSANAHKENEI 737

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGIL 1299
            S     MI +  S+ D ++P+Y +LENV    S  +K       L + + MGYQ R   L
Sbjct: 738  SMRNSSMIASVASYIDLYRPQYAILENVTGMASRTHKQNPLSQLLCAFVGMGYQARVFNL 797

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            +A +FG  QSR R FI   +P   + E P   H          L DN             
Sbjct: 798  DAWSFGAPQSRSRLFIAITAPGLHILEHPALTHSHPPGTKSRALGDNPNGLTFGERRWDI 857

Query: 1360 P-FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
            P F  ++ R    DLP +    +  IM      + W   R            S+  +E  
Sbjct: 858  PVFDFVSARSATQDLPPID---TARIMS-----IPWPDHR-----------PSRVESEEK 898

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                Q IPK P          + +   G +       L ++A+        + R   E  
Sbjct: 899  QALIQNIPKYP----------RTRGLVGAIARGWVDPLEHSARTKAAHSKAWSRTHPEKL 948

Query: 1479 FPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            FPT  T   P     G   H  +DR++TV+E  R+QG+PD+    G   H+ + +GN+V 
Sbjct: 949  FPTVTTGVCPFCIFTGQWLHWQEDRLVTVQEVRRAQGYPDNEVLIGRPVHQWKIVGNSVA 1008

Query: 1538 PTLAFALGRKLKEA 1551
              +A ALG  ++EA
Sbjct: 1009 RQVALALGLAVREA 1022


>gi|386748677|ref|YP_006221885.1| type II DNA modification (methyltransferase) [Helicobacter cetorum
            MIT 99-5656]
 gi|384554919|gb|AFI06675.1| type II DNA modification (methyltransferase) [Helicobacter cetorum
            MIT 99-5656]
          Length = 349

 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 177/421 (42%), Gaps = 87/421 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH  +  ++  C++         
Sbjct: 7    DIFCGAGGLSYGFSTHPNFELIWANDIDKDAILSYQANHKNTQTIL--CDIT-------- 56

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                +C                   NLP   Q+D + GGPPCQ +S + +         +
Sbjct: 57   --QLNC------------------QNLPR-TQIDILLGGPPCQSYSTLGKRQMDE----K 91

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+   ++  + GY + + IL A  +
Sbjct: 92   ANLFKEYLRVLDLVKPKIFIFENVVGLMSMQKGQLFKKICSAFKDRGYILEYTILNALDY 151

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +                       + ++ + N Q+   + T      +  
Sbjct: 152  GVPQIRERVIL-----------------------VGVLKNFNRQFYFPKPTK-----KHF 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F K +R N   L++H S + NE  LI   +
Sbjct: 184  SLKDALGDLPQIQSGENGNALGYLKNADNDFLKFVR-NSKELSEHSSPKNNE-KLIEIMQ 241

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                              L  GQ  D     LP   +  + +   + ++ WE   PT IT
Sbjct: 242  T-----------------LKDGQSKD----DLPKDLRPKSGYINTYAKMWWEKPAPT-IT 279

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q F D Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 280  RNFSTPSSSRCIHPRDSRALSIREGARLQSFRDDYKFYGSASAKRLQIGNAVPPLLSVAL 339

Query: 1545 G 1545
             
Sbjct: 340  A 340


>gi|420440236|ref|ZP_14939193.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-30]
 gi|393056884|gb|EJB57793.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-30]
          Length = 351

 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 179/431 (41%), Gaps = 87/431 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL    +
Sbjct: 91   ANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNTLDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGA--------------------LKSFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAAL 338

Query: 1545 GRKLKEAVESK 1555
               + + +  K
Sbjct: 339  AHAVFDFLRGK 349


>gi|434393274|ref|YP_007128221.1| DNA-cytosine methyltransferase [Gloeocapsa sp. PCC 7428]
 gi|428265115|gb|AFZ31061.1| DNA-cytosine methyltransferase [Gloeocapsa sp. PCC 7428]
          Length = 427

 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 188/448 (41%), Gaps = 90/448 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG S G++Q+G      A+E++      +  N P + +L  +   +   V+  
Sbjct: 18   VDLFAGAGGFSLGIEQAGFDVLV-AVEHDPIHACTYSFNFPLTQVLAADVRKMSGDVIR- 75

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
              +A  C   S   +  +S D          G++D + GGPPCQGFS M +    +    
Sbjct: 76   --EAATCAYRSHYPQAISSWD----------GRIDLVFGGPPCQGFSIMGK---RSLDDE 120

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL----EMGYQVRFGIL 1299
            +  ++  F        P YF++ENV        GQ ++L  A L     + GYQV   IL
Sbjct: 121  RNNLVFHFYRLVTELSPSYFVMENVPGMA---IGQ-YKLWCAQLKTQFEQAGYQVEVQIL 176

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FGV Q R+R F   +    T    P+P                  YS +       
Sbjct: 177  NAADFGVPQRRRRLFFLGSQQGVTPVSLPKP------------------YSTL------- 211

Query: 1360 PFRAMTVRDTIGDLPAVGNG-----------ASKTIMEYQNDPVSWFQKRIRGNMAVLTD 1408
                +TV+D I DLP V              + + ++E Q    S + K +RG ++    
Sbjct: 212  ----ITVKDAIADLPDVEEFPELLFTDEVLLSDRHLLELQQK-ASDYTKLLRGEISSTDF 266

Query: 1409 HISKEMNELNL---IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
               +  N   L   +R Q            LP+++  +S  + +DL           H  
Sbjct: 267  SYRRAWNPQLLTSSMRTQHTANSIARFASMLPNQREPISHLRRLDL-------NGLSHTL 319

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
              G        G    S T P+P+       HP + R+++VRE AR   FPD ++FH + 
Sbjct: 320  RAG-------TGAERGSYTSPRPI-------HPTRSRVISVREAARLHSFPDWFRFHQTK 365

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
             H  RQ+GNAVPP LA A+GR+   A+E
Sbjct: 366  WHGFRQVGNAVPPLLAQAIGRQAIAALE 393


>gi|326476794|gb|EGE00804.1| hypothetical protein TESG_08096 [Trichophyton tonsurans CBS 112818]
          Length = 986

 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 178/434 (41%), Gaps = 51/434 (11%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L++F+G G    GL++ G   +KWA+E+       ++ NHP++           + +
Sbjct: 533  LKALNLFSGGGTFDRGLEEGGAIESKWAVEWGLQQMLTYRANHPDA-----------KGL 581

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
               CG   D +        A +  EN    +   G V FI+ G PCQG+S  N   ++  
Sbjct: 582  KLFCGSVNDYLFQ------AITGKENTY--VARIGDVHFISAGSPCQGYSSANAHKENEI 633

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-FNKGQTFRLTLASLLEMGYQVRFGIL 1299
            S     MI +  S+ D ++P+Y +LENV    S  +K       L + + MGYQ R   L
Sbjct: 634  SMRNSSMIASVASYIDLYRPQYAILENVTGMASRTHKQNPLSQLLCAFVGMGYQARVFNL 693

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            +A +FG  QSR R FI   +P   + E P   H          L DN             
Sbjct: 694  DAWSFGAPQSRSRLFIAITAPGLHILEHPALTHSHPPGTKSRALGDNPNGLTFGERRWDI 753

Query: 1360 P-FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
            P F  ++ R    DLP +      +I    + P                   S+  +E  
Sbjct: 754  PVFDFVSARSATQDLPPIDTARIMSIPWPDHRP-------------------SRVESEEK 794

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
                Q IPK P          + +   G +       L ++A+        + R   E  
Sbjct: 795  QALIQNIPKYP----------RTRGLVGAIARGWVDPLEHSARTKAAHSKAWSRTHPEKL 844

Query: 1479 FPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            FPT  T   P     G   H  +DR++TV+E  R+QG+PD+    G   H+ + +GN+V 
Sbjct: 845  FPTVTTGVCPFCIFTGQWLHWQEDRLVTVQEVRRAQGYPDNEVLIGRPVHQWKIVGNSVA 904

Query: 1538 PTLAFALGRKLKEA 1551
              +A ALG  ++EA
Sbjct: 905  RQVALALGLAVREA 918


>gi|111220172|ref|YP_710966.1| DNA modification methylase [Frankia alni ACN14a]
 gi|111147704|emb|CAJ59362.1| putative DNA Modification methylase (Cytosine-specific
            methyltransferase) [Frankia alni ACN14a]
          Length = 401

 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 191/443 (43%), Gaps = 105/443 (23%)

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
             AS  +    +D+F G GG+S G  Q+G S    AI++++P+ +  + N P         
Sbjct: 48   AASPRSVRTIIDLFCGAGGMSLGFVQAGFSPI-LAIDHDQPSIDTHRANFP--------- 97

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
                       GD+  CV   + ++  A+               D + GGPPCQGFS + 
Sbjct: 98   -----------GDSL-CVDIRDVSDFPAA---------------DVVIGGPPCQGFSRLG 130

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            +  ++   +++  + + F+      QP  F++ENV  F+   K   F        ++GY+
Sbjct: 131  K--KAKKERLENYLWMDFMRCVAASQPAVFVIENVPEFL---KDPAFLGVSREAKKLGYK 185

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            + F +L A  +GV Q R+R  +  +   +  PE P P H            +  + +A  
Sbjct: 186  LVFAVLNAANYGVPQRRQRTIVIGSRIGE--PELPAPTH-----------QEPQEQAAFF 232

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
            S  +  P+R  TVRD I DLP          +E  N            N+     H S+ 
Sbjct: 233  S--DLPPWR--TVRDAISDLP----------LEPTNT-----------NL-----HNSRN 262

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            ++ L+L R + IP  PG +  +LP           + L P C      R      L GRL
Sbjct: 263  VSALSLERYRHIP--PGGNRKNLP-----------LHLQPDCWKYKDPRGGGSTDLMGRL 309

Query: 1474 DWEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            +W+       T    P+     G   HP+ DR +TVRE AR Q FPD +QF GS     +
Sbjct: 310  EWDAPSLTIRTQFLKPE----KGRYLHPEADRSITVREGARLQTFPDDFQFVGSTFQIVK 365

Query: 1531 QIGNAVPPTLAFALGRKLKEAVE 1553
            QIGNAVP  LA  +G ++   +E
Sbjct: 366  QIGNAVPVELARQVGTEIFRHLE 388


>gi|428781246|ref|YP_007173032.1| DNA-methyltransferase Dcm [Dactylococcopsis salina PCC 8305]
 gi|428695525|gb|AFZ51675.1| DNA-methyltransferase Dcm [Dactylococcopsis salina PCC 8305]
          Length = 433

 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 194/449 (43%), Gaps = 95/449 (21%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      +IE +     A + N P         +V+ + V++ 
Sbjct: 13   VDLFAGVGGMTLGFEQAGFDVLA-SIEIDPIHCAAHEFNFP-------FWSVLCQDVIKL 64

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             G+     S+ +  +                  +D + GGPPCQGFS + +         
Sbjct: 65   TGEEIRATSSIQNQD------------------IDVVCGGPPCQGFSLIGK---RVLDDE 103

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILEA 1301
            +  ++  FL      +P+YF++ENV         Q     +    E GYQV+  + +L A
Sbjct: 104  RNSLVFHFLRLVLELKPKYFVMENVAGMGIGKSQQLLEELIKKFQENGYQVQLPYQVLNA 163

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              FGV Q+RKR F+       TLP +P+PM     PE K+ML + Y  ++          
Sbjct: 164  SNFGVPQNRKRLFLLGCRQDQTLPNYPKPMT--KPPEAKVMLLNCYLPNSP--------- 212

Query: 1362 RAMTVRDTIGDLPAVGNGA----SKTIMEYQNDPVSWFQKRIRG--------------NM 1403
               TV D I DLP + N        T+      P S++ +++R               N 
Sbjct: 213  ---TVEDAIIDLPEIENYPELLHQDTVKADFGQP-SFYSRQLRQNGKTDDDFSYPRYYNS 268

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
            ++LT  +  +  E ++ R +  P  PG        E V     +   L P  + NT +  
Sbjct: 269  SLLTASLRTKHTEKSIFRFKATP--PGK------TEPV----SRFYKLHPQGISNTLRA- 315

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
                   G     G +    T P+P+       HP   R +TVRE AR   +PD ++FH 
Sbjct: 316  -------GTPSNRGAY----TSPRPI-------HPYHPRCITVREAARLHSYPDWFRFHV 357

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            +  H  RQIGN+VPP LA A+ +++++ +
Sbjct: 358  TKWHGFRQIGNSVPPFLAKAVAQEIRKVL 386


>gi|420470231|ref|ZP_14968941.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-11]
 gi|393086356|gb|EJB87033.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-11]
          Length = 348

 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 176/422 (41%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+         IL  +M+  
Sbjct: 6    DIFCGAGGLSYGFSVHPHFELIWANDIDKDAILSYQANHKEA-------QTILCDIMQLH 58

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                 CV                         +D + GGPPCQ +S + +         +
Sbjct: 59   CHNLPCVP------------------------IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFIFENVVGLMSMQKGQLFQQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +  A                    LK      Y    +++          
Sbjct: 151  GVPQIRERVILVGA--------------------LKRFKQKFYFPKPIKTH--------F 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFCGSGSAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
             +
Sbjct: 339  AQ 340


>gi|429768004|ref|ZP_19300180.1| DNA (cytosine-5-)-methyltransferase [Brevundimonas diminuta 470-4]
 gi|429189569|gb|EKY30396.1| DNA (cytosine-5-)-methyltransferase [Brevundimonas diminuta 470-4]
          Length = 445

 Score =  130 bits (328), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 200/462 (43%), Gaps = 64/462 (13%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            T ++F G GGLS G    G SS  +A +  + A   F  N   +                
Sbjct: 9    TGELFCGAGGLSRGFHNVGFSSL-FANDLWDLALNTFLTNFSTA---------------- 51

Query: 1183 KCGDAEDCVSTSEAAELAASLD-ENVINNLP------LPGQVDFINGGPPCQGFSGMNRF 1235
              G+A+  +    + E    +D E +++ LP        G +D + GGPPCQGFS +N  
Sbjct: 52   SVGEADSILPLPGSVE---DIDTEYLLDRLPGETGTLRRGDLDVLLGGPPCQGFS-VNSH 107

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM----- 1290
             +S     +  +   ++       P+ F+LENV   +S  +G  F   L S +       
Sbjct: 108  IRSA-EDPRNFLFRHYVRILRGLAPKTFVLENVPGMLSL-EGGAFLQELVSEISSSADGP 165

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAA----SPHDTLPEWPEPMHV-FAAPELKIMLSD 1345
            GY V   IL A  +GV Q R R  +       S        P P+H   A    K   S 
Sbjct: 166  GYDVECRILNAAHYGVPQERFRIVVVGTRKDVSDAVGAATLPAPVHYSMAQAHFKGGRSH 225

Query: 1346 NYQYS---AVRSTANGAPFRAM----TVRDTIGDLPAVGNGASKTIMEYQNDP--VSWFQ 1396
             + Y+     R      P   +    TV   IGDLPA+ NG    +  Y + P  ++ +Q
Sbjct: 226  TFHYAIGHGRRRDNQDLPRVGLLPPTTVEAAIGDLPALTNGGGDDLSHYTSKPGALTAYQ 285

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
            +  R + ++L +H  +E+   N+ R + IP   G DW  +P E           L+P  +
Sbjct: 286  ENARAHASMLANHWCRELVGPNIERVKHIPV--GGDWRSIPRE-----------LLPPGM 332

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
                ++ +  +  +GRL  +    T +T P P     + +   Q R+++VRE AR Q FP
Sbjct: 333  QRALRKDHTKR--YGRLSPDEQASTLLTKPDPHWGKFIHYDVSQQRLISVREAARLQSFP 390

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            D + F G+   +++  GNAVPP LA A+ R++   ++   +T
Sbjct: 391  DHHVFCGAQVDQYKLCGNAVPPLLAEAVARQVSAVLDRFSAT 432


>gi|385800071|ref|YP_005836475.1| DNA-cytosine methyltransferase [Halanaerobium praevalens DSM 2228]
 gi|309389435|gb|ADO77315.1| DNA-cytosine methyltransferase [Halanaerobium praevalens DSM 2228]
          Length = 328

 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 177/432 (40%), Gaps = 109/432 (25%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GG+S G +++G  +  +++E+     E +K N P++       N+I++ +
Sbjct: 2    LNYIDLFSGAGGMSCGFEKAGFENI-FSLEFNPEFAETYKKNFPKN-------NLIVKDI 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             +        +S  E  ++    D            VD I GGPPCQGFS   R  ++  
Sbjct: 54   AD--------ISEPEVKKIIGETD------------VDVIVGGPPCQGFSLAGRIGRTFI 93

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   F+      +P  F+LENV      N G T    +    ++ Y V++ +L+
Sbjct: 94   EDDRNYLFNEFVRIVSIVKPEMFILENVARMARHNNGNTIIEIINEFKKIDYDVKYEVLQ 153

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
               +G+ Q RKR  I      D   E+P+  +                            
Sbjct: 154  TSDYGIPQRRKRIIIVGTK--DYTFEFPKKNN---------------------------- 183

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               +TV+D I DLP + +     I  +              N    +D + ++M+ +   
Sbjct: 184  -SVITVKDAIDDLPTLKSAEESNIPNH--------------NAMNHSDQMLEKMSYI--- 225

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                   + G D +D+P EK++  TG     I         R+N  +             
Sbjct: 226  -------KDGGDRYDIP-EKLRPETGDARKYI---------RYNSKE------------- 255

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
                 P   G +   FH  Q+R LT RE AR Q FPD + F G+     ++IGNAVPP L
Sbjct: 256  ---PSPTVTGDMRKIFHYSQNRALTQRELARLQTFPDDFIFVGNSTKIQQEIGNAVPPKL 312

Query: 1541 AFALGRKLKEAV 1552
            A+ L  K+KE++
Sbjct: 313  AYKLALKVKESL 324


>gi|417996763|ref|ZP_12637038.1| C-5 cytosine-specific DNA methylase [Lactobacillus casei M36]
 gi|410534759|gb|EKQ09397.1| C-5 cytosine-specific DNA methylase [Lactobacillus casei M36]
          Length = 337

 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 186/438 (42%), Gaps = 107/438 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+FAGCGGL+EGL+Q+GI+  K+A+E +    + ++ NH +++M+    N  +R +
Sbjct: 3    INAIDLFAGCGGLTEGLEQAGIT-VKYAVELDPRISKIYEGNHHKTIMI----NSDIRRI 57

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ-ST 1239
             +                          ++    G VD + G PPCQGF+ MNR N+   
Sbjct: 58   SD--------------------------DDFRRMGHVDIVAGCPPCQGFTQMNRNNKRRA 91

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
            +S  +  +I  +L      +P + ++ENV   + +++   F   L  L E+GY + F  +
Sbjct: 92   YSDKRNILIEEYLRAVKIIKPNFIMMENVPQIIYYDR---FNSMLEELKEIGYSIDFKEI 148

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
                FG+ QSR+R  +  A  HD   ++P  M+                           
Sbjct: 149  NVKDFGIPQSRRRLVLIGALSHDV--DFPFRMN--------------------------T 180

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            P +  TVRD I  LP   + +         DP+     RI  N      HI         
Sbjct: 181  PVK--TVRDAIESLPKPTDSS---------DPIH----RIHSNHTPYIQHI--------- 216

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
               + IPK  G +  +LP +              + L    K +  +  ++GR+ W+   
Sbjct: 217  --IELIPKN-GGNRKNLPKK--------------YWLECHKKANIGYSDVYGRMFWDRPS 259

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK--HRQIGNAVP 1537
            PT IT        G   HP Q+R ++VRE +  Q FP  Y F          + IGNA+P
Sbjct: 260  PT-ITGGCLSPSKGRFLHPTQNRSISVREASILQSFPIDYYFDDKCPKTILAQMIGNAIP 318

Query: 1538 PTLAFALGRKLKEAVESK 1555
            P  A   G  +KE +E++
Sbjct: 319  PKFAKIQGLYIKEMIENE 336


>gi|342732841|ref|YP_004771680.1| cytosine-specific methyltransferase [Candidatus Arthromitus sp.
            SFB-mouse-Japan]
 gi|342330296|dbj|BAK56938.1| cytosine-specific methyltransferase [Candidatus Arthromitus sp.
            SFB-mouse-Japan]
          Length = 375

 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 197/441 (44%), Gaps = 95/441 (21%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              +D+F+G GGLS+G  Q+G       I++++ A + +  N   +           +A+ 
Sbjct: 6    TVIDLFSGAGGLSQGFVQAGYKLLA-GIDFDDAALQTYAHNIKGA-----------KALK 53

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
            E   + E  +   E A         + NN     +VD I  GPPCQGFS  G    N S 
Sbjct: 54   EDLFNEEVAIRNIEKA---------ISNN-----EVDVIIAGPPCQGFSLTGSRDINDS- 98

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF--G 1297
                + ++ +A +    +F+P+ F++ENV    +  KG   +  + +  +MGY V     
Sbjct: 99   ----RNKLYVAVVHAVQHFRPKAFMIENVPGMATLYKGAVKQQIINTFEDMGYAVTVTDS 154

Query: 1298 ILEAGAFGVSQSRKRAFIWAASP---HDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             L A  +GV Q RKR F         +D   ++PEP+          + +++Y  +A   
Sbjct: 155  PLLAADYGVPQFRKRMFFVGYRKNLGYDYF-KFPEPL----------LDAEHYIGTA--- 200

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI-SKE 1413
                         D I DLP++ +     IM+Y N+P S +QK +R +  V+ +H+ +  
Sbjct: 201  -------------DAISDLPSLVDELGSEIMDYINEPQSDYQKLMRIDSDVIFNHVGTNH 247

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
              E+  +  Q +P+  G +  DLP                  +  + K +  W       
Sbjct: 248  TKEVKWVISQ-VPE--GGNHKDLPP----------------GVGESRKFNEAWT------ 282

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             +    P+   D          FH   +R+ TVRE AR Q FPD ++F G+   +++Q+G
Sbjct: 283  RYHSKRPSKTIDTGHRNH----FHYKWNRVPTVRENARLQSFPDRFKFLGTKTQQNKQVG 338

Query: 1534 NAVPPTLAFALGRKLKEAVES 1554
            NAVPP LA A+G K+KE ++S
Sbjct: 339  NAVPPLLAQAVGLKMKEHLDS 359


>gi|319639604|ref|ZP_07994351.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399175|gb|EFV79849.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 348

 Score =  130 bits (327), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 183/430 (42%), Gaps = 95/430 (22%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              LD+F GCGGLS G  Q+G    K  I+Y + A   +   H  +  ++           
Sbjct: 9    TVLDLFCGCGGLSLGFIQAGFD-VKLGIDYWQDAITTYTATHKGTQGIV----------- 56

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                           A+L     E +     +  Q+D I GGPPCQGFS   +       
Sbjct: 57   ---------------ADLFNITPEQISQQTQIK-QLDVIIGGPPCQGFSIAGK---RMID 97

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              + ++  AF+ F  ++QP+ FL+ENV N +S  KG   +       ++GY V+  IL A
Sbjct: 98   DERNQLYKAFVDFVRFYQPKAFLMENVPNIMSMGKGAIKQQITQDFEQLGYIVKSQILMA 157

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q+RKRAF +    + T+ E+P                        + T N    
Sbjct: 158  SDYGVPQNRKRAF-FVGFKNGTIFEFP------------------------KQTVN---- 188

Query: 1362 RAMTVRDTIGDLP--AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            + +TV+  I DLP  +V +GA+  ++       S +Q  +R N   L +H   + N+   
Sbjct: 189  QYVTVKQAISDLPDYSVDDGAAYPLLG-----SSEYQHMMRQNSTGLFNHQITQHNDKTK 243

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                 +P   G ++  LP+    L   + V+ I W   N+ K                  
Sbjct: 244  EIIALVPD--GGNYKSLPEH---LRQTRNVN-IAWTRLNSQK------------------ 279

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            P+   D          FH   +R+ TVRE AR Q FPD + F G+   + RQ+GNAVPP 
Sbjct: 280  PSFTIDT----GHNHHFHYQFNRVPTVRESARIQSFPDDFIFLGTKTSQLRQVGNAVPPM 335

Query: 1540 LAFALGRKLK 1549
            LA A+  K+K
Sbjct: 336  LAKAIAEKMK 345


>gi|327308782|ref|XP_003239082.1| hypothetical protein TERG_01066 [Trichophyton rubrum CBS 118892]
 gi|326459338|gb|EGD84791.1| hypothetical protein TERG_01066 [Trichophyton rubrum CBS 118892]
          Length = 1079

 Score =  130 bits (327), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 182/440 (41%), Gaps = 51/440 (11%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
             S  + L  L++F+G G    GL++ G   +KWA+E+       ++ NHP+         
Sbjct: 620  TSSLHKLKALNLFSGGGTFDRGLEEGGAVESKWAVEWGVQQMLTYRANHPDG-------- 671

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
               + +   CG   D +        A +  EN+   +   G   FI+ G PCQG+S  N 
Sbjct: 672  ---KGLKLFCGSVNDYLLQ------AITGKENIY--VAKIGDAHFISAGSPCQGYSSANA 720

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT-FRLTLASLLEMGYQ 1293
            +  +  S     MI +  S+ D ++P+Y +LENV    S    Q      L + + MGYQ
Sbjct: 721  YKDNEVSMRNSSMIASVASYIDLYRPQYAILENVTGMASRTHVQNPLSQLLCTFVGMGYQ 780

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
             R   L+A +FG  QSR R FI   +P   + E P   H          L DN   S   
Sbjct: 781  ARVFNLDAWSFGAPQSRSRLFIAITAPGLHVLEHPALTHSHPPGTKSRALGDNPNGSTFG 840

Query: 1354 STANGAP-FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                  P F  ++      DLP++    +  IM      + W   R            S+
Sbjct: 841  ERRWDTPVFEFVSAHSATQDLPSID---TARIMS-----IPWPDHR-----------PSR 881

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
              +E      Q IPK P          + +   G +       L ++A+        + R
Sbjct: 882  VESEEKQTLIQNIPKYP----------RAQGLIGAIARGWVDPLEHSARMKAATSKAWSR 931

Query: 1473 LDWEGNFPTSITDPQPMGK-VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            +  E  FPT  T   P     G   H  +DR++TV+E  R+QG+PD+    GS   + + 
Sbjct: 932  IHPEKLFPTVTTGVCPFCIFTGSWLHWQEDRLVTVQEVRRAQGYPDNEVLIGSPVQQWKI 991

Query: 1532 IGNAVPPTLAFALGRKLKEA 1551
            +GN+V   +A ALG  ++EA
Sbjct: 992  VGNSVARQVALALGLVVREA 1011


>gi|300868191|ref|ZP_07112823.1| Cytosine-specific methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300333815|emb|CBN58007.1| Cytosine-specific methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 395

 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 182/455 (40%), Gaps = 106/455 (23%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            ++ +F G  GL  GL+++G  +    +E E  A +   LN P                + 
Sbjct: 13   SVSLFTGACGLDLGLEKAGFQTVSL-VEIEPDAVKTISLNRPH---------------LS 56

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C    D    S    L        I+    PG+VD + GGPPCQ FS   +  + +   
Sbjct: 57   LCAIPRDIREVSAQTLLKEGGKILGIDRPLRPGEVDLVTGGPPCQPFSTAGK--RGSVGD 114

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFN---------------------KGQTFR 1281
             +  + + F+   +  QPR+F++ENVR  +S                        G   +
Sbjct: 115  PRGSLFMDFIRIVEEIQPRFFIMENVRGLLSAPIRHRPHEQRGINHPNLAPDEMAGAAMQ 174

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
            + LA +  +GY+V + +L A  +GV Q R+R         D++   P P H         
Sbjct: 175  VILAEIKRIGYEVVYDLLNAADYGVPQVRERVIFIGYKGSDSV-TLPLPTHS-------- 225

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
                       +S  +  P + +T++D +           K +++ Q + + + + R++ 
Sbjct: 226  -----------QSGVSRLP-KWITLKDGL-----------KGLIDPQPEYIPYSEARLK- 261

Query: 1402 NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK 1461
                           L L++        G +W +LP+E  + + G              K
Sbjct: 262  --------------YLRLLKA-------GENWKNLPNELKQEAMG-----------GAYK 289

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
                  G + RL W+   PT  T P       MC HPD+ R L+VRE AR Q FPD + F
Sbjct: 290  SEGGKVGFYRRLTWDKPSPTVTTSPH-QKATDMC-HPDELRPLSVRESARIQTFPDDWVF 347

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            +GS   K+RQIGNAVP  L  A+   L + +   R
Sbjct: 348  YGSTASKYRQIGNAVPVLLGSAIAHYLYQIIRGDR 382


>gi|449085227|gb|AGE84600.1| cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 352

 Score =  130 bits (326), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 177/429 (41%), Gaps = 83/429 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S G       +    ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGEYLKEFDAL-IGLDCDKQALITFENNHKNAIGV-------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I G PPCQGFS   +   +   K 
Sbjct: 51   CGDITQTDIKEKVIKLAKKL------------EINMIIGRPPCQGFSNKGK---NLGLKD 95

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
                 L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 96   PRNFFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 155

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAF   AS                          ++ ++ +       P ++
Sbjct: 156  YGVPQNRERAFNVGASRF------------------------SFDFNLLE------PSQS 185

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 186  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 245

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +W                      LP       Q+K  +GRL+W    PT I
Sbjct: 246  LINKEQGKEW----------------------LPKNLHGKQQFKSTWGRLNWNKISPT-I 282

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   HP+  R +T RE AR Q F D+Y F+G+     +QIGNAVPP LA A
Sbjct: 283  DTRFDTPSNGTNSHPELHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALA 342

Query: 1544 LGRKLKEAV 1552
            LG+ + +++
Sbjct: 343  LGKAILKSL 351


>gi|386745575|ref|YP_006218792.1| cytosine specific DNA methyltransferase [Helicobacter pylori HUP-B14]
 gi|384551824|gb|AFI06772.1| cytosine specific DNA methyltransferase [Helicobacter pylori HUP-B14]
          Length = 650

 Score =  130 bits (326), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 172/420 (40%), Gaps = 81/420 (19%)

Query: 1129 GCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAE 1188
            G GG S GL           ++ ++ A   F+ NH  ++ +              CGD  
Sbjct: 306  GAGGFSAGLGYLKEFDALIGLDCDKQALITFENNHKNAIGV--------------CGDIT 351

Query: 1189 DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI 1248
                  +  ELA  L            +++ I GGPPCQGFS  N+         +  + 
Sbjct: 352  QTEIKEKVIELAKKL------------EINMIIGGPPCQGFS--NKGKNLGLKDPRNFLF 397

Query: 1249 LAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQ 1308
            L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  +GV Q
Sbjct: 398  LEYIEIVKAIKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKDYGVPQ 457

Query: 1309 SRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            +R+RAFI  AS                          ++ ++ +       P +++ V+D
Sbjct: 458  NRERAFIVGASRF------------------------SFDFNLLE------PSQSVNVQD 487

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
             I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + + I K 
Sbjct: 488  AISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLKLINKE 547

Query: 1429 PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQP 1488
             G +                      CLP       Q+K  +GRL+W    PT  T    
Sbjct: 548  QGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKISPTIDTRFDT 585

Query: 1489 MGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
                G   HP+  R +T RE AR Q F D Y F+G+     +QIGNAVPP LA ALG+ +
Sbjct: 586  PSN-GTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALALGKAI 644


>gi|282880843|ref|ZP_06289537.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
            5C-B1]
 gi|281305284|gb|EFA97350.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
            5C-B1]
          Length = 374

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 186/433 (42%), Gaps = 91/433 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +DIF+G GGLS G +++G +    A E +E   +++K NH  ++M+    N  +R+ 
Sbjct: 1    MNVVDIFSGVGGLSVGFEKAGFNVV-LANEIDEQIAQSYKRNHTHTIMV----NEDIRSF 55

Query: 1181 MEKCGDAEDCVSTSEAAE-LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            ++   D     S S+A E L ++  E +   L     ++ + GGPPCQGFS      + T
Sbjct: 56   VDHFDD-----SISKATERLNSNCKEKLYQEL---NDINVVIGGPPCQGFSMAGSRIRKT 107

Query: 1240 WSKV---QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG----- 1291
               +   +  +   +      F+P+YF+ ENV   +S   G+    T+ S+ E       
Sbjct: 108  SEFIDDSRNFLFRYYFKIIQKFEPQYFVFENVVGILSSKNGEILE-TIKSIFEDDSNFKN 166

Query: 1292 --YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
              Y +   + +A  +GV Q R+R  I        L             ELK+M       
Sbjct: 167  GRYYLHIKVFKAEEYGVPQQRRRVIILGTKFDFDLDR-----------ELKLMRES--LP 213

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
            + ++S  N    R  T+RD I DL  +    S ++                       +H
Sbjct: 214  TELQSVFN----RRETIRDAIFDLKDIATDGSSSV----------------------PNH 247

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
            +S + N + L R ++I      +W  L DE++                     H+   G 
Sbjct: 248  VSSKHNGIALRRMKQII--ANENWQSL-DEEI---------------------HSVHSGA 283

Query: 1470 FGRLDWEGNFPTSITD-PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            +GR+DW+    T  T    P G  G   HPD DR LT RE AR Q FPD + F GS    
Sbjct: 284  YGRMDWDKPSMTITTRFDTPSG--GRFTHPDLDRTLTAREAARIQTFPDDFIFSGSKTSI 341

Query: 1529 HRQIGNAVPPTLA 1541
             +QIGNAVPP LA
Sbjct: 342  CKQIGNAVPPRLA 354


>gi|208434405|ref|YP_002266071.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432334|gb|ACI27205.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 348

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 181/424 (42%), Gaps = 87/424 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + +  A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSIHPYFELIWANDIDRDAILSYQANHKEAQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLNC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERGYVLEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +       TL  + +  H F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----TLKRFKQKFH-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E +   +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLHPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q F D+Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFSDNYKFCGSASTKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKL 1548
             + +
Sbjct: 339  AQAV 342


>gi|428219918|ref|YP_007083390.1| DNA-cytosine methyltransferase [Pseudanabaena sp. PCC 7367]
 gi|427992261|gb|AFY71954.1| DNA-cytosine methyltransferase [Pseudanabaena sp. PCC 7367]
          Length = 409

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 176/429 (41%), Gaps = 107/429 (24%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAGCGG++ GL++SG +     +E +  A +  + N   + ++              
Sbjct: 5    IDLFAGCGGMALGLKRSGFNHA-CLVELDRQAAQTLRANFDPATIV-------------- 49

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                 D +  +     A   +           Q+D ++ GPPCQ FS     NQ      
Sbjct: 50   ---EADIIKLNREGYFAQFRE-----------QIDLLSAGPPCQSFSYAG--NQRGLDDR 93

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + +++   L+  +  QP+  L+ENV++  + N G+  +  L  L  + Y+ ++ IL A  
Sbjct: 94   RGQLVYETLNTIEQVQPKMVLIENVKHLSTINSGKVLKAILGRLHSLRYRTQWQILNAND 153

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV+Q+R+R  I A     T   W           +K+     Y Y  V           
Sbjct: 154  YGVAQNRQRLIILA-----TRKGW----------RIKLKYPTKYAYKPV----------- 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
              +RD + D P              +D V +  ++ R                L+L+   
Sbjct: 188  --LRDALQDCPT-------------SDGVQYSSEKAR---------------VLDLVP-- 215

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
                 PG  W  LP E  K   G+  D          KR     G+  RL W     T +
Sbjct: 216  -----PGGCWQALPVELQKQYMGKSFD------TEGGKR-----GMARRLAWHEPSLTLL 259

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
              P    +   C HPD  R LTVRE AR QGFPDS+ F GS   ++RQIGNAVP  LA A
Sbjct: 260  CSP-AQKQTERC-HPDHTRPLTVREYARIQGFPDSFVFTGSTYSRYRQIGNAVPVDLAEA 317

Query: 1544 LGRKLKEAV 1552
            +G+ +   +
Sbjct: 318  IGKSIIRVI 326


>gi|452002619|gb|EMD95077.1| hypothetical protein COCHEDRAFT_1043573, partial [Cochliobolus
            heterostrophus C5]
          Length = 1005

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 158/624 (25%), Positives = 256/624 (41%), Gaps = 121/624 (19%)

Query: 959  TFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKA---YCSD 1015
            T+K+G  V LKP    QLLE +V ++    + K   V VR+  R +   AE A   + S+
Sbjct: 466  TYKSGDTVYLKPSKNHQLLEPVVIQQ---IDQKKGSVTVRKLLRLERDCAELAKNLHRSN 522

Query: 1016 I--REVYYSEETHLIFVEAIAGKCEVR--KKNDIPACNAPAIFQ-----HIFFCE---HL 1063
            I   E+  ++E      + +   C +R   K+D+     P  +      H++F      +
Sbjct: 523  IAPNELVLTDEYSETKSDRLERHCSIRFVSKSDVTTNKVPFPYNRQGAGHLWFISMGLSV 582

Query: 1064 HDPSKG--SLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHL 1121
             D  K    L++LP +++ R   G LD++                              L
Sbjct: 583  KDDQKRLVYLRRLPCNVRQRTKIG-LDTK------------------------------L 611

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              + +F G G L  GL++ G    +  ++  + A    + N       INN   +     
Sbjct: 612  RGVSLFGGGGVLDRGLEEGGAVEFRTVVDSSQHAIRTQQAN-------INNHTTVCLY-- 662

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                    C S +   + A   D N I  +   G VDFI  G PC  FSG+ +   S  S
Sbjct: 663  --------CGSVNTFLDSALKGDTNFIVRV---GDVDFIAAGCPCVAFSGLQQNPLSLSS 711

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
                 +I  F SF D ++P Y +LENV N  S   G      +A L+ +GYQV   I+++
Sbjct: 712  LQNASLISTFCSFVDLYRPLYGVLENVLNISSERAGSALSQMVACLVSLGYQVSHYIMDS 771

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD-----NYQYSAVRSTA 1356
              +G +Q R RA +  A+P   L    +P H  +  + ++         N ++ A R   
Sbjct: 772  WNYGSAQRRSRAVVTIAAP--GLQPIVQPYHTHSRSDEEVRSRSLGQLPNGEFCAGRQHY 829

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
               PF  +        LP +G   ++T + Y +  +         N+    D        
Sbjct: 830  -PTPFYHVPAETVSSGLPNIGYSTAQTCIPYPDHRIP--------NVPTRKDRA------ 874

Query: 1417 LNLIRCQKIPKR-PGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
              L+ C  IPK  PG  + +  D          + LIP  L    +R  +    + R+  
Sbjct: 875  --LLDC--IPKEPPGCGYKEAED----------LGLIPLHL----RRKREIGKSYQRIKK 916

Query: 1476 EGNFPT-----SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            +G  PT     SI+D     + G   H ++ R ++++E  R+QG PD+    G+I+ + R
Sbjct: 917  DGLVPTITTGASISD----SRNGAVMHWEEPRTISLQEARRAQGIPDAEPIIGTIRDQWR 972

Query: 1531 QIGNAVPPTLAFALGRKLKEAVES 1554
              GN V   + FA+G  L +AVES
Sbjct: 973  IAGNGVDRKVGFAIGLGLLQAVES 996


>gi|385221953|ref|YP_005771086.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            SouthAfrica7]
 gi|317010732|gb|ADU84479.1| type II DNA modification (methyltransferase) [Helicobacter pylori
            SouthAfrica7]
          Length = 348

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 180/424 (42%), Gaps = 87/424 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSMHPYFELIWANDIDKDAILSYQANHKETQTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                            A LD     NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ----------------AQLD---CYNLPC-TSIDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L   D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +
Sbjct: 91   ANLFKEYLRLLDLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERGYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +                       + ++ S   ++   + T         
Sbjct: 151  GVPQMRERVIL-----------------------VGVLKSFKQKFYFPKPTK-----MHF 182

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            +++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI   +
Sbjct: 183  SLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIEIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++  E   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWLEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GRKL 1548
               +
Sbjct: 339  AHAI 342


>gi|417937475|ref|ZP_12580775.1| DNA (cytosine-5-)-methyltransferase [Streptococcus infantis SK970]
 gi|343391739|gb|EGV04312.1| DNA (cytosine-5-)-methyltransferase [Streptococcus infantis SK970]
          Length = 364

 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 187/441 (42%), Gaps = 86/441 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F+G GGLS G  + G + TK A+E+++     +K+NHP   ++I++   I ++ 
Sbjct: 1    MNVIDLFSGAGGLSLGFIKDGHTVTK-AVEFDDSIAHTYKMNHPGVEVIIDDIANIDKSG 59

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN-RFNQST 1239
            + K GDA                                I GGPPCQGFS    R     
Sbjct: 60   VFKEGDAS------------------------------IIIGGPPCQGFSMAGARIRNGF 89

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR-----LTLASLLEMG-YQ 1293
                +  +   + +     +P  F++ENV+   +   G+ F       +   LL+   Y+
Sbjct: 90   MDDPRNYLFKHYFNVVKTVKPDIFIMENVKGIQTMQDGKIFSEIIRIFSDPELLDGNPYK 149

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            + + ++ A  FG+ Q R+R  I      +   E+           +K +  ++  +    
Sbjct: 150  LYYRVINASDFGIPQKRERMIIIGTKNDNVDFEF------LWEKTIKQIQKEDSTF---- 199

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
                   F  +TVRD I +L   G   S  I++    P++ +QK +  N   + +H    
Sbjct: 200  -------FNTVTVRDAISNL---GLETSDGIVD-NPLPLTDYQKFLSSNSEKIHNHTKTN 248

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
             + + + R  KI  R G ++  L DEK+K                     +   G +GRL
Sbjct: 249  HSPIAIERMSKI--RSGENFKVL-DEKIK---------------------SIHSGSYGRL 284

Query: 1474 DWEGNFPTSITD-PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
             WE   PT  T    P G  G   HP  +R LT RE AR Q FPD Y F+G      +QI
Sbjct: 285  SWEDLAPTITTRFDTPSG--GRFIHPIYNRTLTPREAARIQSFPDDYIFYGKKSSIIKQI 342

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAVPP  ++ L R +   +E
Sbjct: 343  GNAVPPKFSYFLSRLVDNILE 363


>gi|448542558|ref|ZP_21624720.1| DNA-cytosine methyltransferase [Haloferax sp. ATCC BAA-646]
 gi|445707037|gb|ELZ58903.1| DNA-cytosine methyltransferase [Haloferax sp. ATCC BAA-646]
          Length = 368

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 153/350 (43%), Gaps = 40/350 (11%)

Query: 1214 PGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS 1273
            P  VD I GGPPCQGFS +           +  +   F+ +  +++P +F++ENV    +
Sbjct: 21   PDDVDVIVGGPPCQGFSSIRPDRGDDVEDERNGLYSDFIEYVSHYEPDFFIMENVVGLAT 80

Query: 1274 FNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV 1333
               G T    L     +GY   + IL    FG+ Q R+R  +  A+    + E+PEP H 
Sbjct: 81   HEDGDTISQILEDAKNIGYSADWRILNGANFGLPQRRERLIMIGAADEQDI-EFPEPTH- 138

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANGAPFR-------AMTVRDTIGDLPAVGNGASKTIME 1386
              A    I   D  +    + T +   FR       A T+ D IGDLP +  G  +  +E
Sbjct: 139  -QANGRTIGYRDKTKVITTQPTLSN--FRDAEALPEARTIMDAIGDLPKLEAG--EEAIE 193

Query: 1387 YQNDPVSWFQKRIRGNMAVLTDHISKEM--NELNLIRCQKIPKRPGADWHDLPDEKVKLS 1444
            Y   P + +Q  +R     LT H +     N + +IR     K+          E +K S
Sbjct: 194  YTEPPQNRYQAALRQGSERLTLHKATNHGDNMMTIIRNSGPNKQTTI-------ENLKES 246

Query: 1445 TGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF--PTSITDPQPMGKVGMCFHPDQDR 1502
              +V D+  +     +  +++       +    NF  P S            C HP+QDR
Sbjct: 247  D-EVDDVENYIKTGYSSSYSRLDADLPSVTMTVNFIHPAS----------NKCIHPNQDR 295

Query: 1503 ILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             LT RE AR Q FPD+++F GS      QIGNAVPP     LGR L E V
Sbjct: 296  ALTPREGARIQSFPDTFEFFGSRSDIVEQIGNAVPP----LLGRVLAEHV 341


>gi|389576210|ref|ZP_10166238.1| DNA-methyltransferase Dcm [Eubacterium cellulosolvens 6]
 gi|389311695|gb|EIM56628.1| DNA-methyltransferase Dcm [Eubacterium cellulosolvens 6]
          Length = 427

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 190/453 (41%), Gaps = 72/453 (15%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISS------TKWAIEYEEPAGEAFKLNHPESLML 1169
            S E     +D+FAG GGLSEG  Q G S         +A +  E     F L     L +
Sbjct: 5    SSEGTYNFIDLFAGAGGLSEGFMQVGFSPIAHVEMNPYAAKTLETRTGYFYLKEQGKLNI 64

Query: 1170 INNC---NV----ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPG--QVDFI 1220
              +    N+     L  + E+   +  C + S+  E    L E +  ++   G   VD I
Sbjct: 65   YYDYLKGNISREKFLEYIPERLLQSVICETMSD--ESLPELFERIDKSMKEQGISHVDVI 122

Query: 1221 NGGPPCQGFSGMNRFNQSTWSKV------QCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
             GGPPCQ +S + R  QS+  KV      + ++   +  F   +QP  F+ ENV    S 
Sbjct: 123  IGGPPCQAYSLVGR-AQSSHMKVPMNEDPRNDLYKLYARFLKKYQPEMFVFENVMGIESA 181

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
            N G+T++   A L  +GY++      A  FGV Q+R+R  I           W +     
Sbjct: 182  NGGETWKKIKAQLKRVGYEIEPQERNARTFGVLQNRRRMIIVG---------WKK----- 227

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
                       NY Y   +   + A      V D + DLP +  GA K + EY++   S 
Sbjct: 228  ---------GTNYSYPEFQDKTSDA-----IVEDLLNDLPKLVPGAGKDVSEYRSGEYSD 273

Query: 1395 FQK--RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLI 1452
            + K  ++R +  VLT H ++     N  R  +I KR    W D    ++  ++       
Sbjct: 274  YLKTMKLRSDDDVLTLHKARP----NKDRDIEIYKRAIEAWDDGKGSRLNYNS------- 322

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDW-EGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRE 1508
               LP   K H        R    EG      T    + K G  F HPD  Q R +TVRE
Sbjct: 323  ---LPEELKTHKNRHSFVDRFKVVEGKDHYCHTMLAHISKDGHYFIHPDIKQHRSITVRE 379

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             AR Q FPD+Y F G    +  QIGNAVPP +A
Sbjct: 380  AARIQSFPDNYFFEGPRTAQFVQIGNAVPPLMA 412


>gi|347726860|gb|AEP19808.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 355

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 172/425 (40%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD F G G  S GL+          ++ ++ A  AF+ NH  +  +              
Sbjct: 6    LDSFCGAGSFSAGLEYLEEFDALIGLDCDKQALIAFENNHKNATGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD    ++ +E  E    L + +        +++ I GGPPCQGFS  N+         
Sbjct: 52   CGD----ITQTEIKEKVIKLAQKL--------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  +G            +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVRAIKPEIFIIENVKNLISCARGYFLEEIKERFKALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+RAFI   S                            ++S V    +  P  +
Sbjct: 158  YGVPQKRERAFIVGDS----------------------------RFSFVFDQLD--PSLS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  +G+       +Y N   S ++  +R +   L +H +   +E    + +
Sbjct: 188  VNVQDAISDLAYLGSNEGAIESDYLNPIQSSYEALLRKDSPKLYNHQAANHSEAAFEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      C+P       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CMPKNLHGKQQFKSTWGRLNWNKISPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T        G   HPD  R +T RE AR Q F D Y  +G+     + IGNAVPP LA A
Sbjct: 286  TRFDTPSN-GTNSHPDFHRSITPREAARIQSFSDKYILYGNKTSVCKHIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|269797252|ref|YP_003311152.1| DNA-cytosine methyltransferase [Veillonella parvula DSM 2008]
 gi|269093881|gb|ACZ23872.1| DNA-cytosine methyltransferase [Veillonella parvula DSM 2008]
          Length = 423

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 208/466 (44%), Gaps = 88/466 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL-NHPESLMLINNCNV---- 1175
            L  +D+F+G GGL+EG + +        IE ++ A  +  L N       INN +     
Sbjct: 2    LNIIDVFSGAGGLTEGFRDNTKFKFICHIEMDKDACASLCLRNIYYYFKNINNLSPYFEY 61

Query: 1176 ----ILRAVMEKCGDAE---DCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQG 1228
                I R V+     +E   D +S   + E    + E +   L    ++D I GGPPCQ 
Sbjct: 62   IQGNISREVLYSMVPSEVTKDVLSKEISEESILPIFEFIDKRLG-TKELDGIIGGPPCQA 120

Query: 1229 FSGMNRFNQSTWSKVQCEMILA--FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            +S + R N          + L   +L F + ++P++F+ ENV+  +SF K  +  L L  
Sbjct: 121  YSIIGRANNKKKKDTDKRIYLYKHYLDFCNRYKPKFFIFENVKGLLSF-KDISGDLLLDK 179

Query: 1287 LLE----MGYQVRFGILEAGAFGVSQSRKRAFI--------WAASPHDTLPEWPEPMHVF 1334
            +++     GY V + ++ A  FGVSQ+R+R  I        +  S  D L  + EP    
Sbjct: 180  MIQEFDSAGYAVNYEVINANDFGVSQNRERVIIVGHRKDLLFNKSFFDYLYNYVEP---- 235

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVS- 1393
             +P+LK                           +   DLP +  G S    +Y  + VS 
Sbjct: 236  -SPKLK---------------------------ELFADLPNIRAGKSSK--KYCCNYVSK 265

Query: 1394 WFQKRIRGNMAVLTDHISK--EMNELNLIRCQKIPKRPGAD--WHDLPDEKVKLSTGQVV 1449
            + QK IR N  +LT HI++    N+L + +     K+ G +  ++D+P   V+L T    
Sbjct: 266  YVQKYIRSNDDILTQHIARPHSKNDLRIYKLVLKAKKIGENLRYNDIP---VELQTHS-- 320

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPD--QDRILTVR 1507
                    NT    +++K     LD++    T +      G   +  HPD  Q+R ++VR
Sbjct: 321  --------NTTSFLDRYKA----LDYDSVSHTVVAHISKDGHYYI--HPDLRQNRSISVR 366

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            E AR QGFPD++ F  S     RQIGNAVPP L+  L   + + ++
Sbjct: 367  EAARIQGFPDNFYFESSRTAAFRQIGNAVPPILSVKLASAILDFIK 412


>gi|350287792|gb|EGZ69028.1| DNA methyltransferase Dim-2 [Neurospora tetrasperma FGSC 2509]
          Length = 1416

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 144/554 (25%), Positives = 230/554 (41%), Gaps = 99/554 (17%)

Query: 1018 EVYYSEETHLIFVEAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            E+ Y+E+   +  E I GKC VR       IP+        +IFF  H            
Sbjct: 723  ELVYTEDLVDVRAERIVGKCVVRCFRPDERIPSPYDRGGTGNIFFITH------------ 770

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG----GASQENHLATLDIFAGC 1130
                               R+    C+  +      +QG    G   +  L  +D++ G 
Sbjct: 771  -------------------RQDHAGCVPLDTFPPTLRQGFNPLGNLGKPKLRGMDLYCGG 811

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++ G+   +WA +  + A   +  N P+     N  +  L       G  +D 
Sbjct: 812  GNFGRGLEEGGVVEMRWANDIWDKAIHTYMANTPDP----NKTHPFL-------GSVDDL 860

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
                    L  +L+    +N+P PG+VDFI  G PC GFS + + ++   ++V+ + ++A
Sbjct: 861  --------LRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSLLTQ-DKKVLNQVKNQSLVA 911

Query: 1251 -FLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFGILEAGAFGV 1306
             F SF D+++P+Y +LENV   V    N+ Q        +L+ MGYQ +  + +A A G 
Sbjct: 912  SFASFVDFYRPKYGVLENVSGIVQTFVNRKQDVLSQLFCALVGMGYQAQLILGDAWAHGA 971

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHV-FAAPELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
             QSR+R F++ A+P   LP+ P P H  +      I    N +    RS    A F+ ++
Sbjct: 972  PQSRERVFLYFAAPGLPLPDPPLPSHSHYRVKNRNIGFLCNGESYVQRSFIPTA-FKFVS 1030

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPV-SWFQKRIRGNMAVLTDH-----ISKEMNELNL 1419
              +   DLP VG+G     + + +  + S     IR   A +  H       K  N  N 
Sbjct: 1031 AGEGTADLPKVGDGKPDACVPFPDHRLASGITPYIRAQYACIPTHPYGMNFIKAWNNGNG 1090

Query: 1420 IRCQKIPKRPGADWHDLPDE-KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            +  +       +D    P E K + S   V                 WK    RL+ +  
Sbjct: 1091 VMSK-------SDRDLFPSEGKTRTSDASV----------------GWK----RLNPKTL 1123

Query: 1479 FPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            FPT      P   ++G   H D+DR  TV+E  R+QG+ D     G    + + +GN+V 
Sbjct: 1124 FPTVTATSNPSDARMGPGLHWDEDRPYTVQEMRRAQGYLDEEVLVGRTTDQWKLVGNSVS 1183

Query: 1538 PTLAFALGRKLKEA 1551
              +A A+G K +EA
Sbjct: 1184 RHMALAIGLKFREA 1197


>gi|347726864|gb|AEP19810.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 355

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 179/426 (42%), Gaps = 83/426 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH ++ + +             
Sbjct: 6    LDLFCGAGGFSAGLENLKEFDALIGLDCDKQALITFE-NHKKNAIGV------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA +L+            V+ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQAEIKEKVIKLAQTLE------------VNMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV QSR+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQSRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R +   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I +  G +                      CLP       Q+K  +GRL+     PT  
Sbjct: 248  LINQEQGKE----------------------CLPKNLHGKQQFKSTWGRLNGNKVSPTID 285

Query: 1484 TD-PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            T    P        HP+  R +T R+ AR Q + D+Y F+G+     +QIGNAVPP LA 
Sbjct: 286  TRLDTPSNATNS--HPELHRSITPRKAARIQSYSDNYIFYGNKTSVCKQIGNAVPPLLAL 343

Query: 1543 ALGRKL 1548
            ALG+ +
Sbjct: 344  ALGKAI 349


>gi|336467555|gb|EGO55719.1| hypothetical protein NEUTE1DRAFT_67631 [Neurospora tetrasperma FGSC
            2508]
          Length = 1452

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 144/554 (25%), Positives = 230/554 (41%), Gaps = 99/554 (17%)

Query: 1018 EVYYSEETHLIFVEAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            E+ Y+E+   +  E I GKC VR       IP+        +IFF  H            
Sbjct: 759  ELVYTEDLVDVRAERIVGKCVVRCFRPDERIPSPYDRGGTGNIFFITH------------ 806

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG----GASQENHLATLDIFAGC 1130
                               R+    C+  +      +QG    G   +  L  +D++ G 
Sbjct: 807  -------------------RQDHAGCVPLDTFPPTLRQGFNPLGNLGKPKLRGMDLYCGG 847

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++ G+   +WA +  + A   +  N P+     N  +  L       G  +D 
Sbjct: 848  GNFGRGLEEGGVVEMRWANDIWDKAIHTYMANTPDP----NKTHPFL-------GSVDDL 896

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
                    L  +L+    +N+P PG+VDFI  G PC GFS + + ++   ++V+ + ++A
Sbjct: 897  --------LRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSLLTQ-DKKVLNQVKNQSLVA 947

Query: 1251 -FLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFGILEAGAFGV 1306
             F SF D+++P+Y +LENV   V    N+ Q        +L+ MGYQ +  + +A A G 
Sbjct: 948  SFASFVDFYRPKYGVLENVSGIVQTFVNRKQDVLSQLFCALVGMGYQAQLILGDAWAHGA 1007

Query: 1307 SQSRKRAFIWAASPHDTLPEWPEPMHV-FAAPELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
             QSR+R F++ A+P   LP+ P P H  +      I    N +    RS    A F+ ++
Sbjct: 1008 PQSRERVFLYFAAPGLPLPDPPLPSHSHYRVKNRNIGFLCNGESYVQRSFIPTA-FKFVS 1066

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPV-SWFQKRIRGNMAVLTDH-----ISKEMNELNL 1419
              +   DLP VG+G     + + +  + S     IR   A +  H       K  N  N 
Sbjct: 1067 AGEGTADLPKVGDGKPDACVPFPDHRLASGITPYIRAQYACIPTHPYGMNFIKAWNNGNG 1126

Query: 1420 IRCQKIPKRPGADWHDLPDE-KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            +  +       +D    P E K + S   V                 WK    RL+ +  
Sbjct: 1127 VMSK-------SDRDLFPSEGKTRTSDASV----------------GWK----RLNPKTL 1159

Query: 1479 FPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            FPT      P   ++G   H D+DR  TV+E  R+QG+ D     G    + + +GN+V 
Sbjct: 1160 FPTVTATSNPSDARMGPGLHWDEDRPYTVQEMRRAQGYLDEEVLVGRTTDQWKLVGNSVS 1219

Query: 1538 PTLAFALGRKLKEA 1551
              +A A+G K +EA
Sbjct: 1220 RHMALAIGLKFREA 1233


>gi|409990103|ref|ZP_11273531.1| hypothetical protein APPUASWS_04335 [Arthrospira platensis str.
            Paraca]
 gi|291571237|dbj|BAI93509.1| type II DNA modification methyltransferase [Arthrospira platensis
            NIES-39]
 gi|409939035|gb|EKN80271.1| hypothetical protein APPUASWS_04335 [Arthrospira platensis str.
            Paraca]
          Length = 451

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 190/464 (40%), Gaps = 74/464 (15%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            ++D+FAG GG++ G +  G     +A + ++ A      NHPE++               
Sbjct: 8    SIDLFAGAGGMTTGFKNQGFK-LLFANDCDQAALATLSHNHPEAM--------------- 51

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                     ++SE+ E     +     NL   G +D + GGPPCQGFS    + +     
Sbjct: 52   ---------TSSESIESLNPFELRQTLNL-RKGDLDILLGGPPCQGFS---TYGKRDPLD 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  +   FL F + F+P+ F++ENV   +S   G      +    ++ Y V    L+A 
Sbjct: 99   QRNRLYRYFLKFLEEFRPKAFVMENVVGILSLEGGYVVEDIVNKAEKLNYGVSVITLDAV 158

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             FGV Q RKR FI   S H  + + P   H  +    K   S +YQ      + +     
Sbjct: 159  DFGVPQFRKRVFILGGSNHQKI-QPPSATHEISKNTSKPD-SSSYQLCLFPESLDPPYQP 216

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW---FQKRIRGNMAVLTDHISKEMNELNL 1419
            A+ V + IGDLP        T       PVS    +Q+ +R     +  H +K M  +  
Sbjct: 217  AIKVSEAIGDLPEEVLPPRLTHESIPYPPVSGLSRYQQELRSKTGEILHHSAKRMMGIRR 276

Query: 1420 IRCQKIPKRPGADWHDLPDEKVK------------LSTGQVVDLIPWCLPNTAKRHNQWK 1467
            +R   +  RPG D+      ++K            L  G  +  I  C     ++  + +
Sbjct: 277  LRLALM--RPG-DYGTEISSRLKEGGFSRELIDQLLKGGNGLRDIHECRRQDREKEEKLR 333

Query: 1468 GL-----------------------FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1504
             +                       + RLDW  N P+               HP+ DR +
Sbjct: 334  EILQQGHVDIQEVLQSLDSGGFANKYRRLDW--NAPSHTLVAHMARDCSDFIHPEFDRFI 391

Query: 1505 TVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            +VRE AR Q FPD Y FHGS   + +QIGNAVPP LA A+  ++
Sbjct: 392  SVRESARLQSFPDRYYFHGSQFQQFKQIGNAVPPKLAEAIASEI 435


>gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis MIT
            98-5491]
 gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis MIT
            98-5491]
          Length = 589

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 178/437 (40%), Gaps = 88/437 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+Q+    T   +++E+ A + F  N  +++ +              
Sbjct: 5    LDLFCGAGGFSYGLEQNKNFKTVIGLDFEKAAIDTFNHNFKQAIGI-------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  +     +   LA  L            +V+ + GGPPCQGFS   +      +  
Sbjct: 51   CGDITNKEVKDKVVNLAKEL------------KVNMVIGGPPCQGFSLKGK--NLGLADE 96

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L +L   +   P  F++ENV+N  +   G      +  +  MGY V   IL A  
Sbjct: 97   RNFLFLEYLELVEKVNPEIFIIENVKNLYNAVNGYFREEIIKKIKNMGYVVNCKILNAKH 156

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+R F  A    + L  +P+  +                               
Sbjct: 157  YGVPQNRERVFFIAHK--ERLLSFPKESNCL----------------------------- 185

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            ++V+D I DL  + +G      EY+ +P S +QK +R +   L  HI+   ++  + + +
Sbjct: 186  VSVKDAISDLNYLESGEGTIQAEYKIEPQSDYQKIMRADR--LQYHIASNHSKAAINKLK 243

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I    G +                      CLP       ++   +GRL W+   PT  
Sbjct: 244  MIAPECGKE----------------------CLPTHLHGKQKFSTTWGRLVWDDVSPTID 281

Query: 1484 T--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            T  D    GK     HP   R +T RE AR Q F D++ F G+     +QIGNAVPP LA
Sbjct: 282  TRFDTPSNGKNS---HPVLHRAITPREAARIQSFDDNFYFKGTKTQVCKQIGNAVPPLLA 338

Query: 1542 FALGRKLKEAVESKRST 1558
             AL   +   +   + T
Sbjct: 339  KALADNIINQINQDQHT 355


>gi|46019826|emb|CAE52348.1| putative cytosine-specific methyltransferase [Streptococcus
            thermophilus]
          Length = 365

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 191/431 (44%), Gaps = 89/431 (20%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS+G +Q+G +     +++++PA + +K N  +S+           A+  
Sbjct: 6    VVDLFSGAGGLSQGFKQAGFN-ILMGVDFDDPALKTYKHNLKDSV-----------ALKA 53

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQSTW 1240
               D E  +   E             NNL    ++D I  GPPCQGFS  G    N S  
Sbjct: 54   DLFDEESAIKDIE-------------NNLN-GNKIDVIIAGPPCQGFSLTGSRDINDS-- 97

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG--I 1298
               + ++ +A +    +F+P+ FL+ENV    +  KG+     + +  ++GY V      
Sbjct: 98   ---RNKLYVAVVHAVKHFKPKAFLIENVPGMATLYKGKVKEQIINTFEDLGYAVSVTDKP 154

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +GV Q RKR F +     D   E+      F  PE  +                 
Sbjct: 155  LLAADYGVPQIRKRMF-FVGYRKDLNYEY------FKFPEPTL----------------- 190

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI-SKEMNEL 1417
             P + +   D I DLPA+ +   +  + Y  +P S +Q+ +R N  V+ +HI ++  +E+
Sbjct: 191  TPDKHIGTADAISDLPALVDELGEENVPYHMEPQSEYQRLMRKNSLVIHNHIGTRHTDEV 250

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
              +  Q +P+  G +  DLP                  + ++ K +  W        +  
Sbjct: 251  KWVISQ-VPE--GGNHKDLPP----------------GVGDSRKFNEAWT------RYHS 285

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
              P+   D          FH   +R+ TVRE AR Q FPD ++F G+   ++RQ+GNAVP
Sbjct: 286  QKPSKTIDTGHRNH----FHYKWNRVPTVRENARLQSFPDDFEFLGTKTQQYRQVGNAVP 341

Query: 1538 PTLAFALGRKL 1548
            P LA A+  ++
Sbjct: 342  PLLAQAIAEEM 352


>gi|1297185|gb|AAA98912.1| theoretical protein with similarity to Swiss-Prot Accession Number
            P34881 DNA (cytosine-5-) methyltransferase [Arabidopsis
            thaliana]
          Length = 620

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 40/243 (16%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPL G V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 320  LPLSGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 379

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + L    
Sbjct: 380  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEDLQ--- 436

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
                     +++ +  DN                A+T+ D I DLP V N  +  +M+Y 
Sbjct: 437  -----VGRIQMEFLKLDN----------------ALTLADAISDLPPVTNYVANDVMDYN 475

Query: 1389 N-DPVSWFQKRI---RGNMAV----------LTDHISKEMNELNLIRCQKIPKRPGADWH 1434
            +  P + F+  I   R    +          L DH    + + +L R   IPK+ GA++ 
Sbjct: 476  DAAPKTEFENFISLKRSETLLPAFGGDPTRRLFDHQPLVLGDDDLERVSYIPKQKGANYR 535

Query: 1435 DLP 1437
            D+P
Sbjct: 536  DMP 538



 Score = 40.8 bits (94), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 146  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 193


>gi|452981219|gb|EME80979.1| hypothetical protein MYCFIDRAFT_114349, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 923

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 141/570 (24%), Positives = 219/570 (38%), Gaps = 87/570 (15%)

Query: 995  VKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIF 1054
            V++RRF    DI       S   ++  S E      E +  +C VR              
Sbjct: 428  VQMRRFLYKKDIFP----ASRPNQLLPSSEIFSRQCEHLVRECHVR-------------- 469

Query: 1055 QHIFFCEHLHDP-SKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQG 1113
              IF C +L  P  +G            Y     D +A S   K    +G D  E     
Sbjct: 470  --IFSCSNLPTPYDRGGAGDY-------YYIADTDMDADSINAKSPFRQGWDPQE----- 515

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
             A     L  L IF G G    GLQ+ G      A++Y E A  ++K N  E +      
Sbjct: 516  -APSNRKLKGLGIFCGGGTFDRGLQEGGAVQFTHAVDYAEHALHSYKANSSEPVKFF--- 571

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
                       G  +D +S + AAE         ++N    G++D I+ G PCQGFS + 
Sbjct: 572  ----------LGSVDDYLSNAMAAE--------SVHNTATTGEIDLISAGSPCQGFSKLQ 613

Query: 1234 RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ--------TFRLTLA 1285
                S  S+    M+ + +SF D++ P Y +LENV       + +         F   ++
Sbjct: 614  HDRDSPRSRKNASMVASVVSFVDFYVPEYLILENVVTMTDHPRDKKGPIPEQNVFSQVIS 673

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD 1345
            +L+ +GYQV+  ++++ ++G  Q R R FI A +P       PE  H      L+     
Sbjct: 674  ALVGLGYQVQQFLMDSWSYGSPQQRSRVFIVATAPSAVPLSQPEITHAHPTKNLRTRNLG 733

Query: 1346 NYQYSAVRSTANGAPFRAM---TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
                     T    PF A+   T   ++ DLP V +   +  + + +             
Sbjct: 734  RSSNGLPFGTRRTNPFVALPFVTAEQSVADLPTVYDSVPQLCIRFPDH-----------R 782

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
            +AVL      E  ++   R   +P RP  +W  L         G+  +       N  + 
Sbjct: 783  LAVL------EAPDVR-ARIAMVPTRP-REWGLLQAHDAGRLRGEPREYFIRTKANLVRS 834

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
                K  + R+     FPT +T      G  G   H DQ R LTV E  R+ G+ D    
Sbjct: 835  GINSKS-YTRVCPNHPFPTIVTRLSVGDGINGRVLHWDQHRPLTVMEARRALGYLDHEVL 893

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             G+ + + R +GN+V   +A  LG  L+++
Sbjct: 894  IGTPEKQLRIVGNSVDRKVALVLGLALRDS 923


>gi|288929280|ref|ZP_06423125.1| modification methylase HphIA (Cytosine-specific methyltransferase
            HphIA) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329382|gb|EFC67968.1| modification methylase HphIA (Cytosine-specific methyltransferase
            HphIA) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 370

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 185/440 (42%), Gaps = 87/440 (19%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + +D+FAGCGG S G +++G   TK A+E ++     + +NH   LML ++   +     
Sbjct: 5    SVIDLFAGCGGFSIGFEKAGFHVTK-AVEIDKQIAHTYSMNHANVLMLNDDIGSV----- 58

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
                D E   +  EA                     + I GGPPCQGFS  G        
Sbjct: 59   ----DNEYNFTRGEA---------------------EVIVGGPPCQGFSMAGARIRKNGF 93

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG------YQ 1293
                +  +   +L+     +P+ F+ ENV+  +S  KG+ FR  +++           Y 
Sbjct: 94   IDDPRNYLFKHYLNVVKIVRPKVFVFENVKGILSMKKGEIFREIVSAFSNPANFDGNHYF 153

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            + +  ++A  FGV + R+R F+       TL +  E   +      +I+           
Sbjct: 154  INYKTVKAIEFGVPEKRERLFVIG-----TLNKSIELEKLEQLTRTQIL----------- 197

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
               N + F  +TV D I  LP      S+  M     P + +Q+ +      LT+H +  
Sbjct: 198  -AENPSFFDDVTVGDAIAGLPM----PSEDGMIENPRPCNRYQEYLCSKNDTLTNHKATI 252

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
              E  + R ++I K  G +W  L +E   + +G                       +GR+
Sbjct: 253  HTETAVGRMRQIQK--GQNWTSLEEEIRSVHSGS----------------------YGRM 288

Query: 1474 DWEGNFPTSITD-PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
             W+    T  T    P G  G   HP+++R +T RE AR Q FPD + F+GS     +QI
Sbjct: 289  SWDEPSATITTRFDTPSG--GRFTHPEENRTITPREAARIQSFPDDFVFYGSKSSICKQI 346

Query: 1533 GNAVPPTLAFALGRKLKEAV 1552
            GNAVPP L+F +   +K  +
Sbjct: 347  GNAVPPKLSFFIASLIKNII 366


>gi|194688394|gb|ACF78281.1| unknown [Zea mays]
          Length = 322

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 144/294 (48%), Gaps = 56/294 (19%)

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF----AAPEL--KIMLS-DNYQYS 1350
            ++ AG +G+ Q R R F+W A     LP++P P +       AP    + M++ D  Q  
Sbjct: 1    MMVAGCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQKP 60

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR---------- 1400
            +++        +A+ + D I DLP V N     +MEY   P + FQ+ IR          
Sbjct: 61   SLK--------KALLLGDAISDLPKVQNHQPNDVMEYGGSPKTEFQRYIRLSRKDMLDWS 112

Query: 1401 ------GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDL--------------PD-E 1439
                   +   L DH    +N  +  R Q+IP + GA++ DL              P+ E
Sbjct: 113  FGEGAGPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIE 172

Query: 1440 KVKLSTGQVVDLIPWCLPNTAKRHNQWKGL--FGRLDWEGNFPTSITDPQPMGKVGMCFH 1497
            +VKLS+G+ +      +P+ A    + K L  FGRL W+   PT +T  +P  +V    H
Sbjct: 173  RVKLSSGKPL------VPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--IIH 224

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            P Q R+LT+RE AR QGFPD Y+  G I+ K+ Q+GNAV   +A ALG  L +A
Sbjct: 225  PTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQA 278


>gi|257877765|ref|ZP_05657418.1| cytosine specific DNA methyltransferase [Enterococcus casseliflavus
            EC20]
 gi|257811931|gb|EEV40751.1| cytosine specific DNA methyltransferase [Enterococcus casseliflavus
            EC20]
          Length = 380

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 193/439 (43%), Gaps = 91/439 (20%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + +D+F+G GGLS+G  Q+G       I++++ A   +  N   +           +A+ 
Sbjct: 6    SVIDLFSGAGGLSQGFVQAGFDVLA-GIDFDDAALRTYGHNIKGA-----------KALK 53

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
            E   D E  +           +++N+ N       +D I  GPPCQGFS  G    N S 
Sbjct: 54   EDLFDEEKSIR---------DIEKNLANK-----NIDVIIAGPPCQGFSLTGARDINDS- 98

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG-- 1297
                + ++ +A +   D+F+P+ FL+ENV    +  KG   +  + +  +MGY +     
Sbjct: 99   ----RNKLYVAVVHAVDHFRPKAFLIENVPGMATLYKGAVKQQIINTFEDMGYSISVTDK 154

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS-DNYQYSAVRSTA 1356
             L A  +GV Q RKR F            +  P         K  LS DNY  +A     
Sbjct: 155  PLLAADYGVPQMRKRMFFVGFRKDLNYDYFEFP---------KAYLSKDNYVGTA----- 200

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI-SKEMN 1415
                       D I DLP++ +   +  + Y  +P S +QK +R N + + +H+ +   +
Sbjct: 201  -----------DAISDLPSLIDTLGQESVPYSKEPQSDYQKLMRKNSSCIYNHVATNHTD 249

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            E+  +  Q +P+  G ++ DLP+                 + ++ K +  W        +
Sbjct: 250  EVKWVISQ-VPE--GGNYKDLPE----------------GVGSSRKFNEAWT------RY 284

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
                P+   D          FH   +R+ TVRE AR Q FPD ++F G+   ++RQ+GNA
Sbjct: 285  HSQKPSRTIDTGHRNH----FHYKWNRVPTVRENARLQSFPDYFEFLGTKTQQNRQVGNA 340

Query: 1536 VPPTLAFALGRKLKEAVES 1554
            VPP LA A+G K+   +E+
Sbjct: 341  VPPLLAQAIGEKMLLHLEN 359


>gi|363580908|ref|ZP_09313718.1| DNA-cytosine methyltransferase [Flavobacteriaceae bacterium HQM9]
          Length = 346

 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 177/435 (40%), Gaps = 104/435 (23%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              +D+F GCGGLS+G   +G       I+  + A E F  NH +S               
Sbjct: 6    TVIDLFCGCGGLSQGFIDAGYK-IPLGIDKWKDAIETFNFNHKDS--------------- 49

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
               G   D +   E   +  S +E +        +VD I GGPPCQGFS   +       
Sbjct: 50   --KGIVADLL---ELNPVTVSENEKI-------DEVDVIIGGPPCQGFSIAGK---RIIE 94

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              + ++   F++F ++F+P+ FL+ENV N +S   G      +     +GY+V   IL A
Sbjct: 95   DERNQLYKTFVNFVEHFKPKAFLMENVPNIMSMGNGVIRNQIIKDFENLGYKVSHQILLA 154

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q+RKRAF +    + +  ++P P                             P 
Sbjct: 155  SDYGVPQNRKRAF-FVGLKNGSEFKFPIPT---------------------------TPN 186

Query: 1362 RAMTVRDTIGDLP--AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
              +T  + I DL    V +G       Y +   S FQK++R     + +H   E  E  +
Sbjct: 187  NKITSEEAISDLTEHTVNDGTP-----YLDKYKSSFQKQMRNGNKFIFNHQITEHKEKTI 241

Query: 1420 IRCQKIPKRPGADWHDLPDE-----KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
                 +P   G ++ +LP E     KV ++  ++    P    +T  RH+          
Sbjct: 242  EIIAMVPD--GGNYKNLPKELHETRKVNIAWTRLNSQKPSFTIDTGHRHH---------- 289

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
                                 FH + +R+ TVRE AR Q FPD + F  S   +++Q+GN
Sbjct: 290  ---------------------FHYEFNRVPTVRESARIQSFPDDFIFQCSKTSQYKQVGN 328

Query: 1535 AVPPTLAFALGRKLK 1549
            AVPP LA  L   +K
Sbjct: 329  AVPPVLAKVLAETIK 343


>gi|417787172|ref|ZP_12434855.1| DNA-cytosine methyltransferase [Lactobacillus salivarius NIAS840]
 gi|334307349|gb|EGL98335.1| DNA-cytosine methyltransferase [Lactobacillus salivarius NIAS840]
          Length = 366

 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 197/433 (45%), Gaps = 90/433 (20%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG S G +++G + TK A+E++    E +  NHP + M++++          
Sbjct: 4    VIDLFAGAGGFSTGFRKAGFAITK-AVEFDASIAETYIKNHPGTKMIVDDI--------- 53

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW-S 1241
            K  D  +  S +EA                     + I GGPPCQGFS     N+  +  
Sbjct: 54   KNVDQTNEFSHNEA---------------------EVIIGGPPCQGFSMAGARNRDGFMG 92

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM------GYQVR 1295
              +  +   + +     +P+ F++ENV+  +S +KG+ FR  ++   +        Y + 
Sbjct: 93   DPRNYLFKHYFNIVKKVKPKVFIMENVKGLLSMSKGEIFREIISIFSDKERLDGDSYTLY 152

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD-NYQYSAVRS 1354
              +++A  FG+ Q R+R  I      + +  + E   ++   + KI +SD N+       
Sbjct: 153  SRVVKAVEFGIPQKRERLIIVGVLNKENV-NFAE---IWEETKRKIKVSDKNF------- 201

Query: 1355 TANGAPFRAMTVRDTIGDLP-AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
                  F  +T+ D I +LP    NG    I++   +P + ++K +     +  +HI + 
Sbjct: 202  ------FDNVTLADAISNLPLPTENG----IIDAP-EPKTNYEKELFKEGKIY-NHIKRH 249

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
             ++  L R  KI  + G ++  L +E +K                     +   G +GR+
Sbjct: 250  HSKKVLERLSKI--KTGDNFKSL-NENIK---------------------SIHSGSYGRM 285

Query: 1474 DWEGNFPT-SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
             W+   PT +IT        G    PDQDR LT RE AR Q FPD Y+F+G+    ++QI
Sbjct: 286  SWDE--PTMTITTRFDTPSGGRFTLPDQDRTLTAREAARVQSFPDDYRFYGNKTSVNKQI 343

Query: 1533 GNAVPPTLAFALG 1545
            GNAVPP LA+ L 
Sbjct: 344  GNAVPPKLAYFLA 356


>gi|302876802|ref|YP_003845435.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687485|ref|ZP_07629931.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579659|gb|ADL53671.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 363

 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 190/449 (42%), Gaps = 111/449 (24%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLML----INNCNVIL 1177
            +D+F+G GGLS G   +G       +++++ A + FK NH   ES+ L     +N +VI+
Sbjct: 8    VDLFSGAGGLSRGFYDAGYDVV-LGVDFDDAALKTFKANHGTAESMKLDLFNHDNIDVIV 66

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRF 1235
              + EK                      N+        Q+D + GGPPCQGFS  G    
Sbjct: 67   DYLAEK----------------------NI--------QLDVLVGGPPCQGFSIAGPRDM 96

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
            N    S     + +A +  A+  QP+  +LENV   +  N G   +  +    E+GY++ 
Sbjct: 97   NDKRNS-----LYVAMVKLAERLQPQAVVLENVPGMIQTNGGIGAKRIIEDFKEIGYRMT 151

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
              +L A  +G+ Q RKR F       DT  E+PE            +  +NY        
Sbjct: 152  PKLLYAPDYGIPQIRKRVFFVGLRNSDTEFEFPE----------AFVDKENY-------- 193

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNG-----ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
                    +T  D IGDLP++          +    Y ++P + +Q+ +R N   + +HI
Sbjct: 194  --------VTSEDAIGDLPSLQTAEGEIIYGEEEQSYISEPQNAYQRLMRKNSHTVRNHI 245

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
                                     +P EK K    +++ L+P    N      +++G++
Sbjct: 246  GS-----------------------IPIEKTK----RMISLVPEG-KNYKALPEEYQGIY 277

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMC----FHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
               +      T     +P   +       FH   +RI TVRE AR Q FPD + F+G+  
Sbjct: 278  KYHEAL----TRYHSKKPSNTINTGHRSHFHYKWNRIPTVRESARLQSFPDDFIFYGNKS 333

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             ++RQ+GNAVPP L   +  KLK+ ++ +
Sbjct: 334  EQYRQVGNAVPPMLGQVVAIKLKDYLKGR 362


>gi|421717606|ref|ZP_16156908.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R038b]
 gi|407223113|gb|EKE92906.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori R038b]
          Length = 584

 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 146/337 (43%), Gaps = 55/337 (16%)

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
            +++ I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  
Sbjct: 301  EINMIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKAIKPEIFIIENVKNIISCA 358

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
            KG         L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                
Sbjct: 359  KGYFLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGAS---------------- 402

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                    S ++    +  + N        V+D I DL  + +       +Y N   S +
Sbjct: 403  ------RFSFDFNLLELSQSVN--------VQDAISDLAYLCSNEGAFESDYLNPIQSSY 448

Query: 1396 QKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC 1455
            Q  +R N   L +H +   ++  L + + I K  G +                      C
Sbjct: 449  QALMRKNSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------C 486

Query: 1456 LPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515
            LP       Q+K  +G L+W    PT  T        G   HP+  R +T RE AR Q F
Sbjct: 487  LPKNLHGKQQFKSTWGHLNWNKISPTIDTRFDTPSN-GTNSHPELHRSITPREAARIQSF 545

Query: 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             D+Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 546  SDNYIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 582



 Score = 41.2 bits (95), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-- 1273
            +VD +   PPCQG S  N   ++   K +  +++  +      +PR+F+LENV +F    
Sbjct: 85   RVDLVVATPPCQGMSVANHKKKNDEIK-RNSLVIESIDLIKQIKPRFFILENVLSFYKTG 143

Query: 1274 -FNKGQTFRLTLASLLEMG----YQVRFGILEAGAFGVSQSRKRAFI 1315
              +K     L + S++E      Y +   ++    FG + SR R  +
Sbjct: 144  CIDKNDNL-LEIGSIIEQNLSGDYMLYDEVINFKNFGANSSRTRTLV 189


>gi|325564165|gb|ADZ31422.1| M.PsuNI [Pseudomonas stutzeri]
          Length = 422

 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 192/455 (42%), Gaps = 102/455 (22%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              + +F+GCGG  EG++ SG+   K A+E ++ A + ++ N P + +             
Sbjct: 19   TAVSLFSGCGGFCEGIENSGVK-VKVAVELDKFACQTYRHNFPSTPLF------------ 65

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
               GD  + ++     E     DE  + +      VD + GGPPCQG+S  G  + +   
Sbjct: 66   --EGDVHNFLADGSGHE-----DEYRLQD------VDLVFGGPPCQGYSQIGTRKLDDE- 111

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ-VRFGI 1298
                + E+   +    +  +PR FL+ENV N    NKG   ++ L    E+GY+     +
Sbjct: 112  ----RNELYKQYARIVETLRPRVFLMENVPNLALMNKGHFKKIILKHFAELGYKNTIMLL 167

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  F V Q+R+R         D   ++P  +  F    L     D Y+          
Sbjct: 168  LSADEFSVPQTRQRVIFIGTRDED---KFPYDLQTFCETVL-----DCYRVE-------- 211

Query: 1359 APFRAMTVRDTIGDLPA--VGNGASKTIMEYQND----------------PVSWFQKR-I 1399
               RA+TV + IGDLPA  V +G +    + +N                 P S  +KR I
Sbjct: 212  ---RAVTVGEAIGDLPADIVHSGETMDYPKTRNPSQFMKDMRLDFDGPRYPKSLKRKRGI 268

Query: 1400 RGNMAVLTDHISKEMN--ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
                A L +H +KE+     +LI   +    PG   + LP E              W   
Sbjct: 269  GKGAARLHNHHTKEIQARRAHLISLLE----PGMKANSLPKEI-------------W--- 308

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD 1517
               KR  +W+ L   L      P+     Q    +    HP  +R +TVRE AR Q F D
Sbjct: 309  -DGKRPEKWRRLHPEL------PSHTILAQMHRDMSEWIHPYLNRWITVREAARLQSFHD 361

Query: 1518 SYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             + F GS   + +QIGNAVPP L +ALG KL + V
Sbjct: 362  GFVFVGSEWQQLKQIGNAVPPLLGYALG-KLAQTV 395


>gi|308182232|ref|YP_003926359.1| cytosine specific DNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308064417|gb|ADO06309.1| cytosine specific DNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 281

 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 146/334 (43%), Gaps = 55/334 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R N   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKNSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|386750285|ref|YP_006223492.1| cytosine specific DNA methyltransferase [Helicobacter cetorum MIT
            00-7128]
 gi|154795669|gb|ABS86795.1| putative DNA methylase [Helicobacter cetorum]
 gi|384556528|gb|AFI04862.1| cytosine specific DNA methyltransferase [Helicobacter cetorum MIT
            00-7128]
          Length = 381

 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 183/452 (40%), Gaps = 90/452 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  LD+FAG GG S+G + +  +    A E ++    ++K NH  ++M+ ++ N  L+  
Sbjct: 4    LKVLDLFAGVGGFSKGFENANFNIV-LANEIDKEIAYSYKENHKNTIMIDSDINDFLKHY 62

Query: 1181 ME-KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN-RFNQS 1238
               +  D E C                          +D I GG PCQGFS    R  Q+
Sbjct: 63   HNLETKDKEKC------------------------KDIDVIIGGSPCQGFSMAGARIRQN 98

Query: 1239 TWSKVQC-------EMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
               K  C        +   +      F+P++F+ ENV    S NKG   +  + SL   G
Sbjct: 99   ---KQDCFIDDKRNYLFRKYFEVIQAFEPKFFVFENVVGLASMNKGAILQ-EIESLFSNG 154

Query: 1292 YQVRFG-------ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
               + G       + E    GV Q+RKR  I  +      P   E M       +K +  
Sbjct: 155  NNFKQGKYYLYKKVFEVNKIGVPQNRKRLIILGSKT----PFNGEEM-------IKKVRQ 203

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA 1404
             N +++           ++ T++D I DL    N       +Y     S +QK +R    
Sbjct: 204  KNSKFN-----------QSNTIKDAISDLAFKTNKLYIDKQQYLKKSASNYQKEMRFMSN 252

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
            V+ +H      ++ L R Q I  + G ++ DL ++          D+I            
Sbjct: 253  VIYNHTLFNHKKIALERMQHI--KQGQNYKDLKEK----------DMIKSV--------- 291

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS 1524
               G +GRL++      +IT        G   HP  DR +T+RE AR Q F D + F+GS
Sbjct: 292  -HSGAYGRLEYNKQ-AVTITTRFDTPSAGRFIHPLFDRTITIREAARLQSFRDDFIFYGS 349

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
                 +QIGNAVPP L   LG  +KE +   R
Sbjct: 350  KTSICKQIGNAVPPYLGEFLGLMIKEIIHECR 381


>gi|359425654|ref|ZP_09216750.1| putative cytosine-specific methyltransferase [Gordonia amarae NBRC
            15530]
 gi|358239145|dbj|GAB06332.1| putative cytosine-specific methyltransferase [Gordonia amarae NBRC
            15530]
          Length = 395

 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 180/442 (40%), Gaps = 88/442 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGIS--STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            + TLD+FAG GGLSEGL  +  S   T  A+E+E  A   + +NH   L           
Sbjct: 24   IRTLDLFAGAGGLSEGLNTTAGSRFETVRAVEWEPAAAATYTVNHGGQL----------- 72

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                            E     A   E+ +    +P  VD + GGPPCQGFS +NR    
Sbjct: 73   -----------SGRKVEGGPAYAGAIESWLAEDKVP-DVDVVIGGPPCQGFSTLNRAGVG 120

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 + E+   +    +   P+YF+LENV  F+  ++   F+  L   +   Y +   I
Sbjct: 121  AH---RNELWRLYAQTVEKATPKYFVLENVPAFLKSDQWIVFQTELQEGMLKDYSIDVDI 177

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +G  Q+RKR  +     H  LP          AP L      N  +S        
Sbjct: 178  LNAADYGAVQARKRVIV--IGHHKDLP----------APGLP-----NATHSG------- 213

Query: 1359 APFRAMTVRDTIGDLPAVGN--GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
               R  T+ + +  +P   +  G     +EY  D          G       H  +   +
Sbjct: 214  ---RHRTLAEALATVPITVDRIGIPSGTIEYLGD-------EFPGVFTTRELHFGRTYRK 263

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-LFGRLDW 1475
            L+L R + I    G+ W +LPD          +    W       +HN+  G + GRL W
Sbjct: 264  LSLDRFKAISPNGGSRW-ELPDH---------LKAPCWL------KHNRGSGDVMGRLTW 307

Query: 1476 EG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            E       T    P+     G   HP++DR++T  E A  QGFP+ Y + G+ +   RQI
Sbjct: 308  EKPSVTIRTEFFKPEK----GRYIHPEEDRVITHYEAALIQGFPEDYCWVGTREEIARQI 363

Query: 1533 GNAVPPTLAFALGRKLKEAVES 1554
            GNAVP  L  A+GR L +A + 
Sbjct: 364  GNAVPIPLGAAIGRSLIDAFDG 385


>gi|347726868|gb|AEP19812.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 355

 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 178/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A +A++ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALKAWENNHKHAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD     + S   +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTENDSRVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVRALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQNRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL    +       +  N   S +Q  +R +   L ++ +   ++  L + +
Sbjct: 188  VNVQDAIRDLAYFCSNEGAFESDKVNPIQSSYQALMRKDSPKLYNNQATNHSQAALDKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKIGPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T      K G   HP+  R +T RE AR Q F D+   +G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSK-GTNSHPEFHRSITPREAARIQSFSDNNISYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|363890421|ref|ZP_09317758.1| hypothetical protein HMPREF9628_02047 [Eubacteriaceae bacterium CM5]
 gi|361965685|gb|EHL18660.1| hypothetical protein HMPREF9628_02047 [Eubacteriaceae bacterium CM5]
          Length = 407

 Score =  127 bits (319), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 189/443 (42%), Gaps = 104/443 (23%)

Query: 1112 QGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN 1171
            Q   ++     T+++FAG GGL+ G++++G  +    IE+++ A +  K N P   ++ +
Sbjct: 66   QNTEAEVKTFKTIELFAGAGGLALGIEKAGFDTIG-LIEFDKSASDTLKCNRPHWRVIND 124

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSG 1231
            +   I    +EK  D +                          G++D ++GG PCQ FS 
Sbjct: 125  DIANISCLDLEKYFDIKK-------------------------GELDLLSGGAPCQSFSY 159

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
              +  +      +  +   +  F D  QP+ FL ENV+  ++ ++G+T++         G
Sbjct: 160  AGK--RLGLEDARGTLFYHYAKFLDKLQPKMFLFENVKGLLTHDRGRTYKTITDIFENSG 217

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV-FAAPELKIMLSDNYQYS 1350
            Y ++  IL A  +GV+Q R+R  I     +D +    + MH  F  P         ++Y 
Sbjct: 218  YTIQKSILNAWDYGVAQKRER-LITIGIRNDLI----DKMHFDFPIP---------HKYK 263

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
             V             +RD + D P           E +  P S  +++I           
Sbjct: 264  PV-------------LRDILMDCP-----------ESEGTPYSETKRKI----------- 288

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
                        + +P  PG  W D+P++  K       + +  C      R     G+ 
Sbjct: 289  -----------FELVP--PGGYWRDIPEDIAK-------EYMKSCWYMEGGR----TGIL 324

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
             RL  +    T +T P    +   C HP + R  T+RE AR Q FPD +QF GSI  +++
Sbjct: 325  RRLSLDEPSLTVLTSPS-QKQTDRC-HPLEPRPFTIRENARCQSFPDDWQFCGSIGQQYK 382

Query: 1531 QIGNAVPPTLAFALGRKLKEAVE 1553
            Q+GNAVP  LA+ +  K+KEA+E
Sbjct: 383  QVGNAVPVNLAYDIALKIKEALE 405


>gi|326381717|ref|ZP_08203411.1| cytosine-specific methyltransferase [Gordonia neofelifaecis NRRL
            B-59395]
 gi|326199964|gb|EGD57144.1| cytosine-specific methyltransferase [Gordonia neofelifaecis NRRL
            B-59395]
          Length = 356

 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 182/429 (42%), Gaps = 89/429 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLS GLQQSG+     A +Y   A + +  N P+   +   C+V        
Sbjct: 12   IDLFAGAGGLSWGLQQSGMECL-LASDYWGDALKTYSHNMPDHPTI--ECDV-------- 60

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                   ++  + A+L             LP + D++ GGPPCQG+S + + N+     V
Sbjct: 61   -----RKLTMPKLAQL-------------LPEKPDWVVGGPPCQGYSTVGKRNREDPRNV 102

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA-SLLEMGYQVRFGILEAG 1302
               + L F       +P+ F++ENV       K  ++   +A S  ++GY+VRF +L + 
Sbjct: 103  ---LFLQFRRIVKGLRPKGFMIENVLGL----KDMSYEQEVAESFKDLGYRVRFMVLTSA 155

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
              GV Q R+R                    +F  P +     D+  Y             
Sbjct: 156  EHGVPQLRRRVVFVGHRDRG----------LFQGPPIT---HDDETY------------- 189

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
             ++V D I DLP +  G + T  EY   P + +QK +     VL  H      E +L++ 
Sbjct: 190  -VSVADAIFDLPELSAGEAAT--EYTKPPSTPYQKLMHLPGDVLQGHSVSNHPE-HLVKA 245

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                         +PD   + +       IP  L   A  HN +  L     W      +
Sbjct: 246  ISY----------IPDGGNRTA-------IPPKLQPRAGFHNSYSRL---ASWRPAVAIT 285

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
                +P G    C HP QDR LT RE AR Q FPD +QF G +  +  Q+GNAVPP LA 
Sbjct: 286  QNLGKPSGT--RCIHPTQDRGLTTREGARLQSFPDRFQFLGGVTSQRLQVGNAVPPLLAQ 343

Query: 1543 ALGRKLKEA 1551
            A+G  L++ 
Sbjct: 344  AVGEALQDG 352


>gi|423066558|ref|ZP_17055348.1| DNA-cytosine methyltransferase [Arthrospira platensis C1]
 gi|406711866|gb|EKD07064.1| DNA-cytosine methyltransferase [Arthrospira platensis C1]
          Length = 605

 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 172/422 (40%), Gaps = 85/422 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S GL+ +G       +++++ A + F+ NHP++  +              
Sbjct: 11   IDLFSGAGGMSCGLEMAGFECL-LGVDFDKSAIQTFQNNHPQAETI-------------- 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  + +ST +  EL                 ++ I GGPPCQGFS +   N       
Sbjct: 56   CGDLRE-ISTEQIRELIGD------------RHINLICGGPPCQGFSTIGSNNNLDKRNF 102

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
               + L FL F +  +P Y ++ENV   +S     T    L  L  +GY V   +L A  
Sbjct: 103  ---LFLEFLRFVEQLKPDYIIIENVTGLLSRKNENTLTSILTCLQNIGYTVDVRVLSAHH 159

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV + R+R                   + F  P L         Y + +   N      
Sbjct: 160  YGVPEKRRRTIFLG--------------NRFGVPNL---------YPSPQFQDNEPDLDF 196

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +    T+G        A +  +EYQ             N  + T  I    N L   R Q
Sbjct: 197  LPAAKTVG-------FAWENWLEYQGKTY---------NHDLSTAQIP---NHLERQRIQ 237

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP+  G  +   PD++  L      D+    L  +  R  + K L  R  +     TS 
Sbjct: 238  HIPEGKGVRYQ--PDQQAYLPPELWYDIDWEKLRESRFRETKLKRL-ARDSYSPTINTSR 294

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T           +HP ++R LT RE A  Q FP ++ F+G++  + RQIGNAVPP LA A
Sbjct: 295  T---------TYYHPTENRYLTPREAAAIQSFPPNFIFYGTVTQQWRQIGNAVPPLLAKA 345

Query: 1544 LG 1545
            LG
Sbjct: 346  LG 347


>gi|345007276|ref|YP_004810128.1| DNA-cytosine methyltransferase [halophilic archaeon DL31]
 gi|344322902|gb|AEN07755.1| DNA-cytosine methyltransferase [halophilic archaeon DL31]
          Length = 457

 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 208/505 (41%), Gaps = 123/505 (24%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + +D+F G GGLSEGL+++G    +WA++++E A E  + NH E           ++A +
Sbjct: 6    SAIDLFCGAGGLSEGLRRAGYD-VRWALDHDESAVETHRENHGEH---------AIQADI 55

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRF---- 1235
             +   A D  +                     PG++D I GGPPC  FS  G ++     
Sbjct: 56   RETDPAVDGPNIE-------------------PGELDLIVGGPPCPSFSIIGQSKIGSLE 96

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS----------------FNKGQT 1279
            ++S     +  + L FL + DY+QPR F++ENV   +S                 ++G+T
Sbjct: 97   DRSIDEDDRNVLYLDFLRYVDYYQPRAFVMENVPGMLSDTVTVESDTLQESLPVGSEGET 156

Query: 1280 FR-----------LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP--- 1325
             R           + L  +  +GY   +  ++A  FGV Q R+R F       + LP   
Sbjct: 157  ERHPVGEEVPVTDIILKEMDNLGYSADWFRVDAAEFGVPQHRERVFFIGRRTGEGLPNLE 216

Query: 1326 EWP---EPM------HVFAAPELKIMLS-----DNYQYSAV----RSTANGAPFRAMTVR 1367
            +W    EP        +   PELK   S     D    S +    R+  N  P+  +TV 
Sbjct: 217  QWKTHREPTDREKGRRMQIRPELKGDDSAQGTLDTGSSSVLPQFERNRENNRPY--LTVA 274

Query: 1368 DTIGDLPAV---GNGASKTIMEYQNDPVSWFQKRIRG-------NMAVLTDHISKEMNEL 1417
            D I DLP +   G         Y   PVS +Q+ +R            L +H ++  N L
Sbjct: 275  DAIMDLPPISPQGEMPPTKATGYTLPPVSPYQEWVRNVPEDEDWENQELNNHEARYHNHL 334

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQV-VDLIPW---CLPNTAKRHNQWKGLFGRL 1473
            +L              + L    V  + GQV  DL P+     P+  K+ N  +      
Sbjct: 335  DL------------SIYKLLGHGVGWNIGQVSTDLQPYRDDVFPDKYKKQNPAE------ 376

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
                  P S           M  HP + R L+ RE AR Q F D+Y F  S  + +R IG
Sbjct: 377  ------PASTILAHIQKDGHMFIHPTEARSLSPREAARLQSFRDTYWFPESRTNAYRLIG 430

Query: 1534 NAVPPTLAFALGRKLKEAVESKRST 1558
            NAVPP L  A+G  ++E + S   T
Sbjct: 431  NAVPPRLGEAVGVAIREMILSDNDT 455


>gi|444301297|gb|AGD98764.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 354

 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 172/429 (40%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGYSAGLENLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L+            ++ I G PPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAKKLE------------INMIIGRPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+R+RAFI  AS                         D Y            P ++
Sbjct: 158  YGVPQNRERAFIVGASRFSF---------------------DFYLLE---------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSKAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  + RL+W  N   +I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGEQQFKSTWRRLNWN-NISHTI 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   H +  R +T R  AR Q F D+Y  +G+I    +QIGNAVP  LA A
Sbjct: 285  DTRYDTPSNGTNSHREMHRSITPRGAARIQSFSDNYMSYGNITSVCKQIGNAVPLVLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + E +
Sbjct: 345  LGQAILETL 353


>gi|85818104|gb|EAQ39272.1| DNA (cytosine-5-)-methyltransferase [Dokdonia donghaensis MED134]
          Length = 409

 Score =  127 bits (318), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 194/465 (41%), Gaps = 96/465 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA- 1179
            L  +D+F+G GGLSEG  ++G       +E ++ A +       E+ ++ +  N   +  
Sbjct: 4    LNFIDLFSGAGGLSEGFIKAGFKPIA-HVEIDKKACDTL-----ETRLIYHKLNSENKTE 57

Query: 1180 -----VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPG-----------------QV 1217
                 + EK    E+ + T   +EL+     N + N+P+ G                 Q+
Sbjct: 58   KYYDYISEKI-TREEFIKTFSNSELS-----NSVINIPIGGKNNKIIFDKIDTLAKGKQI 111

Query: 1218 DFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFVSFN 1275
            D I GGPPCQ +S + R       K      L   +  F   ++P+ F+ ENV   ++  
Sbjct: 112  DLIIGGPPCQAYSLVGRSRDKDGMKNDPRNFLYKEYAKFLKKYEPKVFVFENVMGLITAE 171

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHV 1333
            KG  F+   A    +GY++ + I ++  FGV Q R+R  +  W        PE+ E    
Sbjct: 172  KGSYFKNMQAYFKRIGYELDYTIQKSEHFGVLQKRRRIILIGWQKGSGFKYPEFEELDEK 231

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVS 1393
            F                              T+R  + DL  +  G  K + +Y   P++
Sbjct: 232  F------------------------------TIRQILSDLKKLKPGDQKNVTKYAK-PIT 260

Query: 1394 WFQKR--IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDL 1451
             + +R  +R  +  +T HI++  NE +L     I K     W     E++K         
Sbjct: 261  TYLERFELRNGVDFVTQHIARPHNERDL----NIYKIAINKWLK-KSERLKYPD------ 309

Query: 1452 IPWCLPNTAKRHNQWKGLFGR---LDWEGNFPTSITDPQPMGKVGMCF-HPDQDRI--LT 1505
                LP   K H   K    R   +D  G   T +     + K G  + +PD+ +I  L+
Sbjct: 310  ----LPTELKTHKNEKSFVDRYKVVDINGLSHTMVAH---IAKDGHHYIYPDKKQIRSLS 362

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            VRE AR Q FPD + F G      RQIGNAVPP +A  + +K+KE
Sbjct: 363  VREAARIQSFPDDFFFEGGRSAAFRQIGNAVPPLMAKEIAKKIKE 407


>gi|346322860|gb|EGX92458.1| DNA methyltransferase Dim-2 [Cordyceps militaris CM01]
          Length = 1182

 Score =  127 bits (318), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 152/618 (24%), Positives = 234/618 (37%), Gaps = 106/618 (17%)

Query: 963  GRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYS 1022
            GRN  L     CQ  E++   E    E    +   R+     D+ +  A  +   EV Y+
Sbjct: 566  GRNRKL-----CQPCEVVYAAE----EFGRLRYTFRKLLSRRDVDS-TASNAPPNEVVYT 615

Query: 1023 EETHLIFVEAIAGKCEVR---KKNDIPA-CNAPAIFQHIFFCEHLHDPSKGSLKQLPAHI 1078
            +ET  +    I G+C VR       IP   +   +  + FF    H    G         
Sbjct: 616  DETVKLGRSHIVGRCHVRWFAATEQIPTPYDRDGVGAYFFFT---HQKECG--------- 663

Query: 1079 KLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQEN--HLATLDIFAGCGGLSEG 1136
                             ++G  I   DE       G  Q++   L  LD+F G G    G
Sbjct: 664  -----------------EEGYTISPLDEAPWSMNQGPRQDSVPKLRGLDLFCGGGNFGRG 706

Query: 1137 LQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194
            L++ G    KWA + +  A   +  N   PE              V    G  +D    +
Sbjct: 707  LEEGGSIMMKWANDMDSKAIHTYMANAIDPEQ-------------VSPFLGSIDDFQRLA 753

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
               + A        +N+P  G+VDFI+GG PC GFS M     +   +    ++ AF S 
Sbjct: 754  MQGQFA--------DNVPRIGEVDFISGGSPCPGFSTMTNDRTTDPQRKNQSLVAAFASC 805

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
             D ++P+Y +LENV   +   + +    F   + +L+ MGYQ R   L+A + G +Q R 
Sbjct: 806  VDLYRPKYGILENVMGIIQSCRDRDQDVFSQLMCALVGMGYQARLFFLDALSCGSAQMRS 865

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAPELK---IMLSDNYQYSAVRSTANGAPFRAMTVRD 1368
            R FI  A+P  TLPE P   H    P +K   +      +  A R  A   PFR  +   
Sbjct: 866  RVFIVFAAPGWTLPEKPLQTHSH-PPSVKNASLGRLPTGEPMAKREIAKCTPFRYKSASQ 924

Query: 1369 TIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKR 1428
                LP + +      + + +  V                 +S     L   R + IPK 
Sbjct: 925  ATAGLPTIYDAKPDICVPFPDHRV-----------------VSGTNTNLMRNRVRLIPKF 967

Query: 1429 P-----GADWHDLPDEKVKLS-TGQVVDLIPWCLPNTAKRHNQ-------WKGLFGRLDW 1475
            P        W+       + +  G++        P +    N            +GR   
Sbjct: 968  PYGMNFSQAWYGYYGTYPRAAGLGRLTKSERSTFPPSRHGENTKVTSTSIQSNAYGRRLP 1027

Query: 1476 EGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
                 T +T   P   K G   H ++DR +TV E  R+QGF DS    G+   +++ +GN
Sbjct: 1028 HQLMGTIVTAASPTDAKQGRTIHWNEDRCMTVLEAKRAQGFLDSEIILGTTTTQYKIVGN 1087

Query: 1535 AVPPTLAFALGRKLKEAV 1552
            +V   ++ ALG  + +AV
Sbjct: 1088 SVAREVSLALGTVITDAV 1105


>gi|340750922|ref|ZP_08687751.1| DNA-cytosine methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421173|gb|EEO36220.1| DNA-cytosine methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 407

 Score =  127 bits (318), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 195/450 (43%), Gaps = 69/450 (15%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F+G GGL+EG  ++G +     +E E  A    K       +   N   I  + +  
Sbjct: 4    LDLFSGAGGLTEGFVRAGYNIIAH-VEKEFSASLTLKTRIAYHYLKQTNQLKIYYSYLND 62

Query: 1184 CGDAEDCVSTSEAAELAASLDE-----------NVINNLPLPGQVDFINGGPPCQGFSGM 1232
                E   S   +  L + ++E           N I+ L    ++D I GGPPCQ +S +
Sbjct: 63   EISREKLYSHIPSQLLDSVINEEINDESINDIYNKIDILRGNKEIDIIIGGPPCQAYSLI 122

Query: 1233 NRFNQSTWSKVQCE----MILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLA 1285
             R   ++ SK+  +    +   +L F + ++P+ F+ ENVR  +S    N    F   + 
Sbjct: 123  GR--AASKSKMVGDSRKYLYKQYLKFLERYRPKLFVFENVRGMLSSKDENGNNIFEKIVI 180

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD 1345
             + E+GY + + IL+A  FGV QSRKR  I           W   +              
Sbjct: 181  EMKEIGYNIDYKILDAKDFGVPQSRKRVIIIG---------WKNEL-------------- 217

Query: 1346 NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAV 1405
            N++Y    +  N      +T+     DLP +  G          + +++  K+I   + V
Sbjct: 218  NFKYPNFETIKND-----ITINQLFADLPKIKAG----------EKINF--KKIVPQIEV 260

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC-LPNTAKRHN 1464
            L+  ++   ++ N+I  Q I  RP  + +DL   K+ ++       + +  LP++   H 
Sbjct: 261  LSK-LNLLDDDFNII-SQHI-SRPN-NINDLKIYKIAVNLFSEGKTLKYTDLPSSLISHK 316

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDSYQF 1521
                   R         S T    + K G  + HPD  Q+R LTVRE AR Q FPDSY F
Sbjct: 317  NLTSFLDRFKVVNGNGISHTMVAHIAKDGHYYIHPDIRQNRSLTVREAARIQTFPDSYYF 376

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
              S      QIGNAVPP +A  +  K+KEA
Sbjct: 377  ENSRTAAFTQIGNAVPPLMAKIIAEKIKEA 406


>gi|164510148|emb|CAJ40945.1| putative DNA cytosine methyltransferase [Sordaria macrospora]
          Length = 1536

 Score =  126 bits (317), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 230/553 (41%), Gaps = 92/553 (16%)

Query: 1018 EVYYSEETHLIFV--EAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEH-LHDPSKG-S 1070
            E+ Y+E+  L+ V  E I GKC VR       IP+        +IFF  H L D  K   
Sbjct: 774  ELVYTEDLDLVEVRGERIVGKCLVRFFRADERIPSPYDRGGTGNIFFITHGLEDDGKCVP 833

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
            LK  P+ ++                      +G + LE    G    +  L  +D++ G 
Sbjct: 834  LKTFPSTLR----------------------QGFNPLEKNLLG----KPKLKGMDLYCGG 867

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++ G+   +WA +  + A   +  N P+        N  L       G  +D 
Sbjct: 868  GNFGRGLEEGGVVEMRWANDIWDKAIHTYMANTPDP----EKTNPFL-------GSVDDL 916

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
                    L  +L+    +N+P PG+VDFI  G PC GFS + + ++   ++V+ + ++A
Sbjct: 917  --------LRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSLLTQ-DKKVLNQVKNQSLVA 967

Query: 1251 -FLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFGILEAGAFGV 1306
             F SF D+++P+Y +LENV   V    N+ Q        +L+ MGYQ +  + +A A G 
Sbjct: 968  SFASFVDFYRPKYGVLENVSGIVQTFVNRKQDVLSQLFCALIGMGYQAQLTLGDAWAHGA 1027

Query: 1307 SQSRKRAFIWAASP-HDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
             QSR+R F++ A+P              +      I    N + S V+       F+ ++
Sbjct: 1028 PQSRERVFLYFAAPGLPLPSPPLPSHSHYRDKNRNIGFLCNGE-SYVQRIFVPTAFKFVS 1086

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPV-SWFQKRIRGNMAVLTDH-----ISKEMNELNL 1419
              ++  DLP VG+   +    + +  + +    + R   A +  H      +K  N+ N 
Sbjct: 1087 AGESTADLPKVGDAKVEVCTPFPDHRLAAGITPKNRAQYACIPTHPYGMSFNKAWNKGNG 1146

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            I  +        D    P E    ++   V                W+    RL+ +  F
Sbjct: 1147 IMTK-------GDRGLFPSEGTTRTSDASVG---------------WR----RLNPKTLF 1180

Query: 1480 PTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            PT  T   P   ++G   H D+ R  TV E  R+QG+ D     G    + + +GN+V  
Sbjct: 1181 PTVTTTCNPSDARMGPGLHWDEPRPYTVHEMRRAQGYLDEEVLVGRTADQWKLVGNSVSR 1240

Query: 1539 TLAFALGRKLKEA 1551
             +A A+G K +EA
Sbjct: 1241 HMALAIGLKFREA 1253


>gi|291539766|emb|CBL12877.1| DNA-methyltransferase (dcm) [Roseburia intestinalis XB6B4]
          Length = 366

 Score =  126 bits (317), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 183/453 (40%), Gaps = 113/453 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES----LMLIN--NCN 1174
               +D+F+G GGLS G   +G       ++++E A + F+ NH  +    L L N  N N
Sbjct: 5    FTCVDLFSGAGGLSRGFYDAGYDVV-LGVDFDEAALKTFRENHGNAEAMKLDLFNHDNIN 63

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GM 1232
            VI+  + E+     D                          ++D + GGPPCQGFS  G 
Sbjct: 64   VIVDFLRER-----DI-------------------------KLDVLVGGPPCQGFSIAGP 93

Query: 1233 NRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
               N    S     + LA +  AD  +P+  +LENV   +  N G   R  +    ++GY
Sbjct: 94   RDMNDKRNS-----LYLAMVELADRIKPQAVVLENVPGMLQTNGGIGARRIVEDFKKIGY 148

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
             +   +L A  +G+ Q RKR F        T  E+PEP            + D   Y   
Sbjct: 149  VMIPKLLYAPDYGIPQMRKRVFFVGLRDGKTKFEFPEP------------VVDKEHY--- 193

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTI-----MEYQNDPVSWFQKRIRGNMAVLT 1407
                       +T  + IGDLP++     + I      +Y   P + +Q+++R N   + 
Sbjct: 194  -----------VTCEEAIGDLPSLQTEKGEIIYGEEIQDYTMKPANSYQRKMRSNSGKVL 242

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDE-----KVKLSTGQVVDLIPWCLPNTAKR 1462
            +HI     E        +P+  G ++  LP+E     K   +  +     P    NT  R
Sbjct: 243  NHIGSIPIEKTRKMISLVPE--GKNYKALPEEYQGIYKYHEALTRYHSKKPSNTINTGHR 300

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
             +                               FH   +RI TVRE AR Q FPD + F+
Sbjct: 301  SH-------------------------------FHYKWNRIPTVRESARLQSFPDDFIFY 329

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            G+   ++RQ+GNAVPP L   +  KLK+ ++ +
Sbjct: 330  GNKSQQYRQVGNAVPPMLGQVVAEKLKQYLKGQ 362


>gi|336273254|ref|XP_003351382.1| hypothetical protein SMAC_03688 [Sordaria macrospora k-hell]
 gi|380092903|emb|CCC09656.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1536

 Score =  126 bits (317), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 230/553 (41%), Gaps = 92/553 (16%)

Query: 1018 EVYYSEETHLIFV--EAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEH-LHDPSKG-S 1070
            E+ Y+E+  L+ V  E I GKC VR       IP+        +IFF  H L D  K   
Sbjct: 774  ELVYTEDLDLVEVRGERIVGKCLVRFFRADERIPSPYDRGGTGNIFFITHGLEDDGKCVP 833

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
            LK  P+ ++                      +G + LE    G    +  L  +D++ G 
Sbjct: 834  LKTFPSTLR----------------------QGFNPLEKNLLG----KPKLKGMDLYCGG 867

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++ G+   +WA +  + A   +  N P+        N  L       G  +D 
Sbjct: 868  GNFGRGLEEGGVVEMRWANDIWDKAIHTYMANTPDP----EKTNPFL-------GSVDDL 916

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
                    L  +L+    +N+P PG+VDFI  G PC GFS + + ++   ++V+ + ++A
Sbjct: 917  --------LRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSLLTQ-DKKVLNQVKNQSLVA 967

Query: 1251 -FLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFGILEAGAFGV 1306
             F SF D+++P+Y +LENV   V    N+ Q        +L+ MGYQ +  + +A A G 
Sbjct: 968  SFASFVDFYRPKYGVLENVSGIVQTFVNRKQDVLSQLFCALIGMGYQAQLTLGDAWAHGA 1027

Query: 1307 SQSRKRAFIWAASP-HDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMT 1365
             QSR+R F++ A+P              +      I    N + S V+       F+ ++
Sbjct: 1028 PQSRERVFLYFAAPGLPLPSPPLPSHSHYRDKNRNIGFLCNGE-SYVQRIFVPTAFKFVS 1086

Query: 1366 VRDTIGDLPAVGNGASKTIMEYQNDPV-SWFQKRIRGNMAVLTDH-----ISKEMNELNL 1419
              ++  DLP VG+   +    + +  + +    + R   A +  H      +K  N+ N 
Sbjct: 1087 AGESTADLPKVGDAKVEVCTPFPDHRLAAGITPKNRAQYACIPTHPYGMSFNKAWNKGNG 1146

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            I  +        D    P E    ++   V                W+    RL+ +  F
Sbjct: 1147 IMTK-------GDRGLFPSEGTTRTSDASVG---------------WR----RLNPKTLF 1180

Query: 1480 PTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
            PT  T   P   ++G   H D+ R  TV E  R+QG+ D     G    + + +GN+V  
Sbjct: 1181 PTVTTTCNPSDARMGPGLHWDEPRPYTVHEMRRAQGYLDEEVLVGRTADQWKLVGNSVSR 1240

Query: 1539 TLAFALGRKLKEA 1551
             +A A+G K +EA
Sbjct: 1241 HMALAIGLKFREA 1253


>gi|270293678|ref|ZP_06199880.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
 gi|270275145|gb|EFA21005.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
          Length = 361

 Score =  126 bits (317), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 192/432 (44%), Gaps = 89/432 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +DIF+G GGLS G   +GI   ++AIE    A ++F+LNH  + ++              
Sbjct: 6    IDIFSGAGGLSLGGAMAGIK-VRYAIEVNPHAAKSFELNHKGAKVI-------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  D  +T        + DE V            I GGPPCQGFS  N  +++     
Sbjct: 51   CGDIRDVKATD-----FLNKDEEVF----------IIMGGPPCQGFSMSNTMSRNM-DNP 94

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL--LEMGYQVRFGILEA 1301
               +   F+      +PR+F+LENV      N G+T  +       +E GY+V++ +L A
Sbjct: 95   NNLLFKEFVRLVSEIKPRWFVLENVWGMTKMNNGETIEMIKHCFEEIEPGYKVKWKVLWA 154

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R R F+   +      E+P+P               +Y+ S           
Sbjct: 155  DEYGVPQRRMRMFM-VGNNQGIDFEFPKPF--------------DYKVS----------- 188

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQ---NDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                V + IGDLP + NG     + Y     +   + Q+  +G++    + +SK  N+L 
Sbjct: 189  ----VEEAIGDLPVLHNGDMIDSLPYTKSIKESSPYAQQMRKGSIESKQNFVSKS-NDLV 243

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R + I +  G +W  +P+  ++               N + +     G++ RL  + N
Sbjct: 244  MQRYKYIGQ--GENWRAIPESLMR---------------NYSDKTRCHSGIYKRL--KAN 284

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             P+ +       +  M  HP QDR L+VRE AR Q FPD++ F G      +QIGNAVPP
Sbjct: 285  CPSVVISNY---RKSMLIHPYQDRGLSVREAARLQSFPDTFIFQGPHMSIQQQIGNAVPP 341

Query: 1539 TLAFALGRKLKE 1550
             L+ A+  ++ E
Sbjct: 342  LLSKAVMAQILE 353


>gi|51892448|ref|YP_075139.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum IAM
            14863]
 gi|51856137|dbj|BAD40295.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum IAM
            14863]
          Length = 486

 Score =  126 bits (317), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 135/496 (27%), Positives = 214/496 (43%), Gaps = 100/496 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN-HPESLMLINNCNVILRAVME 1182
            LD+FAGCGGLS G Q++G      A+E +  A  +  +N HP                  
Sbjct: 16   LDLFAGCGGLSLGFQRAGFEILA-AVEMDPHAARSHAINFHP------------------ 56

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-----VDFINGGPPCQGFSGMNRFN- 1236
              GD  D    ++  +++    + V+  L  PG+     VD I GGPPCQ ++ + R   
Sbjct: 57   --GDRFDL--HAKPRDISQEQPDQVLGEL-YPGERAEDLVDIIIGGPPCQAYARVGRAKL 111

Query: 1237 QSTWSKVQC-------EMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            +  W   +        ++ L +L + D  +P   ++ENV + +++  G      +A  LE
Sbjct: 112  REIWRHPEGYKLDPRGDLFLHYLYYVDRLKPVALVMENVPDALNYG-GHNIAQEVADWLE 170

Query: 1290 -MGYQVRFGILEAGAFGVSQSRKRAFIWA-ASPHDTLPEWPEPMHVFAAP---------- 1337
               Y  R+ +L A  +GV Q R+R F+ A A      PE+P P H F  P          
Sbjct: 171  DRNYVCRYTLLNAVHYGVPQMRERMFLIAVAGELGVEPEFPVPTHAFTLPAGYKNARKVA 230

Query: 1338 --ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPA--------VGNGASKTIME- 1386
               L ++  +         T + A   A+T  + IGDLP         +G G  +   + 
Sbjct: 231  MRTLGLLQPERLGSFVSPPTVDPALPPAVTAYEAIGDLPPITAHLENRIGRGPRRFTEQV 290

Query: 1387 -YQNDPVSWFQKRIR---GNMAV--LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440
             Y   P S + + +R   G  A+  ++DH+ + +     I  +    RPG  + +     
Sbjct: 291  PYAGPPHSDYARLMRTWPGFEALHGISDHVIRYLPRDYRIFAR---MRPGDQYPEAYAHA 347

Query: 1441 VKLSTGQV-------VDLIPWCLP------------NTAKRHNQWKGLFGRLDWEGNFPT 1481
            + L    V       VD+ P   P            + +K  N+W  +      E + P 
Sbjct: 348  LSLFMAAVERLRREGVDIAPGSEPYQRLWKEYVPPYDVSKFPNRWWKM------ERDLPV 401

Query: 1482 SITDPQPMGKVGMC-FHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
              T    +GK      H D  Q R ++VRE AR Q FPD ++F G++    RQIGNAVPP
Sbjct: 402  R-TLMAHLGKDSYTHIHYDDAQARTISVREAARLQSFPDGFRFAGTMNPAFRQIGNAVPP 460

Query: 1539 TLAFALGRKLKEAVES 1554
             LA+ +G  ++EA+E+
Sbjct: 461  LLAWRVGAAVREAIET 476


>gi|409722754|ref|ZP_11270164.1| DNA-cytosine methyltransferase [Halococcus hamelinensis 100A6]
 gi|448721993|ref|ZP_21704534.1| DNA-cytosine methyltransferase [Halococcus hamelinensis 100A6]
 gi|445790396|gb|EMA41058.1| DNA-cytosine methyltransferase [Halococcus hamelinensis 100A6]
          Length = 458

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 136/504 (26%), Positives = 197/504 (39%), Gaps = 122/504 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L+ +D+F G GGL+EGL+ +G    +WAI+Y++ A EA + NH          +  +RA 
Sbjct: 5    LSAIDLFCGTGGLTEGLRWAGYD-VRWAIDYDKSAVEAHRENH---------GDFAIRAD 54

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            + +   AED                        PG +D I GGPPC  FS + R    + 
Sbjct: 55   IRETNPAEDGPDIE-------------------PGDLDLIAGGPPCPSFSTIGRSKLGSL 95

Query: 1241 SKVQCE------MILAFLSFADYFQPRYFLLENVRNFVS---------------FNKGQT 1279
                 +      + L FL +  +FQP+ F++ENV   ++                  GQ 
Sbjct: 96   KDRSVDEDERNVLYLDFLRYVRHFQPKAFVMENVPGMLTDTVTIESDTLQESLPTETGQE 155

Query: 1280 F------------RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE- 1326
                          + L  + E+ Y V   +++A  FGV Q R+R F        +LPE 
Sbjct: 156  IEQSPVGEEVSVAEVILEEMEELDYTVDCFLVDAADFGVPQHRERLFFIGRRTGKSLPEL 215

Query: 1327 --W---------PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA--------MTVR 1367
              W          +   +   PELK     + +   V S++    F          +TV 
Sbjct: 216  TRWFTHRKPTDREKGQRMQVRPELKGSHDKSQETFRVGSSSILPSFEPDREYRHPYLTVA 275

Query: 1368 DTIGDLPAV---GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
            D I DLP +   G        EY   PVS +Q+  R     +TD    E   L       
Sbjct: 276  DAIMDLPPISPAGEMPPNQATEYTLPPVSPYQEWARN----VTDGEDWENQSL------- 324

Query: 1425 IPKRPGADWHD--------LPDEKVKLSTGQV-VDLIPW---CLPNTAKRHNQWKGLFGR 1472
              +   A WH+        L    V  + GQV   L P+     P+  K+ N  K     
Sbjct: 325  --RNHNARWHNHFDLSIYKLLGSGVGWNIGQVSTRLQPYRNDVFPDKYKKANPTK----- 377

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
                   P S           M  HP + R L+ RE AR Q F D+Y F  S  + +R I
Sbjct: 378  -------PASTILAHIQKDGHMFIHPTEARSLSPREAARLQSFKDTYWFPESRTNAYRLI 430

Query: 1533 GNAVPPTLAFALGRKLKEAVESKR 1556
            GNAVPP LA A+G  ++  + S R
Sbjct: 431  GNAVPPRLAEAVGVAVRRTILSDR 454


>gi|158320926|ref|YP_001513433.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141125|gb|ABW19437.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 423

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 191/460 (41%), Gaps = 75/460 (16%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+FAG GGLSEG  ++G       IE +  A +  K       +  N+   + R   + 
Sbjct: 7    LDLFAGAGGLSEGFLRAGFEPVA-HIELDANACKTLKTRSIYHYLKKNDMLDLYRTYQKT 65

Query: 1184 CGDAEDCVSTSEAAELAASLD----ENVIN------NLPLPGQ-------------VDFI 1220
               +ED V      +L + +     E V+N       LP   Q             +D I
Sbjct: 66   YNKSED-VKDKAIEKLLSYIPKDQLEPVMNIEISEKTLPYIFQEIDCRLKHMEHEGIDLI 124

Query: 1221 NGGPPCQGFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             GGPPCQ +S  G  R   +     +  +   ++ F + ++P+ F+ ENV   ++  KG 
Sbjct: 125  IGGPPCQAYSLVGRARDENNMEDDPRNYLYKLYIRFLNKYKPKAFIFENVPGILTAFKGN 184

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
             FR   A +  +GY ++   ++A  FGV QSRKR  I           W + +  F  P 
Sbjct: 185  LFRNLQAYMRRVGYNIQARKMDAKDFGVLQSRKRVIIIG---------WRKDLE-FDYP- 233

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK- 1397
              I  SD+ ++               TV + + DLP + +G       Y+     + Q  
Sbjct: 234  --IFESDDKEF---------------TVNNLLEDLPKINSGEIYDKFRYRKKINKYLQNT 276

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
            ++R    ++T HI++  NE +L    +I +     W+    E+ ++            LP
Sbjct: 277  QLRVEDDIITHHIARPNNERDL----EIYRIAVETWN---RERARIKYTD--------LP 321

Query: 1458 NTAKRHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQ 1513
                 HN       R     G+   S T    + K G  + HPD  Q+R +TVRE AR Q
Sbjct: 322  ERLMTHNNLTSFLDRFKVVAGDEKYSHTVVAHISKDGHHYIHPDIEQNRSITVREAARIQ 381

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
             FPD Y F G       QIGNAVPP +A  L    KE  E
Sbjct: 382  SFPDDYYFEGPRTSNFVQIGNAVPPLMAEKLAYWFKEKFE 421


>gi|444301295|gb|AGD98763.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 355

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 176/425 (41%), Gaps = 81/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A +A++ NH  ++ +              
Sbjct: 6    LDLFCGAGGFSAGLECLEEFDALIGLDCDKQALKAWENNHKHAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD     + S   +LA  L            +++ I GGPPCQGFS  N+         
Sbjct: 52   CGDITQTENDSRVIKLAQKL------------EINMIIGGPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVRALKPEIFIIENVKNLISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+RAFI  AS                          ++ +  +       P ++
Sbjct: 158  YGVPQDRERAFIVGASRF------------------------SFDFDLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL    +       +  N   S +Q  +R +   L ++ +   ++  L + +
Sbjct: 188  VNVQDAIRDLAYFCSNEGAFESDKVNPIQSSYQALMRKDSPKLYNNQATNHSQAALDKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  +GRL+W    PT  
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGKQQFKSTWGRLNWNKIGPTID 285

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T      K G   HP+  R +T RE AR Q F D+   +G+     +QIGNAVPP LA A
Sbjct: 286  TRFDTPSK-GTNSHPEFHRSITPREAARIQSFSDNDISYGNKTSVCKQIGNAVPPLLALA 344

Query: 1544 LGRKL 1548
            LG+ +
Sbjct: 345  LGKAI 349


>gi|420454595|ref|ZP_14953425.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-14]
 gi|393072945|gb|EJB73719.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-14]
          Length = 281

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 144/330 (43%), Gaps = 55/330 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRF----------------- 101

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                   N+ ++ +       P +++ ++D I DL  + +       +Y N   S +Q  
Sbjct: 102  -------NFDFNLLE------PSQSVNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKISPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            Y F+G+     +QIGNAVPP LA ALG+ +
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAI 275


>gi|385224707|ref|YP_005784632.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
 gi|332672853|gb|AEE69670.1| possible DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 281

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 147/335 (43%), Gaps = 55/335 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ ++D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNIQDAISDLAYLCSNEGAFESDYLNPIQSSYQVL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            Y F+G+     +QIGNAVPP LA ALG+ + E+++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILESLK 280


>gi|432343044|ref|ZP_19592255.1| DNA-cytosine methyltransferase [Rhodococcus wratislaviensis IFP 2016]
 gi|430771931|gb|ELB87748.1| DNA-cytosine methyltransferase [Rhodococcus wratislaviensis IFP 2016]
          Length = 350

 Score =  126 bits (316), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 128/438 (29%), Positives = 179/438 (40%), Gaps = 106/438 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGIS-STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            + TLD+FAG GGLS G +Q+ +      A+E +  A   +K +          C V    
Sbjct: 5    IRTLDLFAGAGGLSLGFEQADLGFEPVHAVEIDAAAARTYKRHF--------GCPVY--- 53

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                 G  ED     +A                     D I GGPPCQGFS + R ++  
Sbjct: 54   ----DGPIEDLERFEDA---------------------DVILGGPPCQGFSPLGR-DRDD 87

Query: 1240 WSKVQC-EMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM-------- 1290
             S+ Q  E+   +L      +P+ F++ENV     F +   F    A LLE+        
Sbjct: 88   ESRAQLNELWQHYLRAVRQVKPKAFVIENVP---EFQRSAQF----ARLLELMETDRELK 140

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
             Y+  +G+L A  +GV Q R+R    A      +P  P P H    P+            
Sbjct: 141  KYRFAYGVLNAADYGVPQRRRRGIFMAVRGRKKVPWPPAPTH---GPD------------ 185

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
            +V +T        +TV D IGD+P         +++ Q D                  HI
Sbjct: 186  SVSAT------EYVTVHDAIGDIPLATARTEVEVVDGQQDL-----------------HI 222

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
             +    ++L R Q IP+  G +  DL   +         DL+P C  N   +      + 
Sbjct: 223  GRNARPMSLARYQAIPE--GGNRFDLARNRP--------DLLPKCWAN---KPTGTTDVM 269

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            GRL W+    T  T+     K G   HP  DR +T RE AR Q FPD ++F G+     R
Sbjct: 270  GRLWWDRPSVTIRTEFYKPEK-GRYLHPVADRPITHREAARLQSFPDDFEFEGTKIQIAR 328

Query: 1531 QIGNAVPPTLAFALGRKL 1548
            QIGNAVPP LA AL R L
Sbjct: 329  QIGNAVPPGLAQALARHL 346


>gi|385215328|ref|YP_005775284.1| cytosine specific DNA methyltransferase [Helicobacter pylori F32]
 gi|317179856|dbj|BAJ57642.1| cytosine specific DNA methyltransferase [Helicobacter pylori F32]
          Length = 281

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 147/335 (43%), Gaps = 55/335 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +        Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESNYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   +++ L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQVALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPNNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            Y F+G+     +QIGNAVPP LA ALG+ + ++++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSLK 280


>gi|387821614|ref|YP_006301563.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis Bi-07]
 gi|386654222|gb|AFJ17351.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis Bi-07]
          Length = 502

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 176/441 (39%), Gaps = 100/441 (22%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E+++  L  F+G GGL  G +++GIS+  +  E           N P+  +L        
Sbjct: 120  EDNICALSFFSGAGGLDLGFERAGISAALYC-ENNRECRMTLHRNRPDVALL-------- 170

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                   GD    +S  E   +A          +P   ++D + GGPPCQ FS      +
Sbjct: 171  -------GDITK-ISADEVRRMA---------RIPQGREIDVMFGGPPCQAFSTAG--AR 211

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN----------KGQTFRLTLASL 1287
              +   +  + L +L  A   +PRY ++ENVR  +S            +G   R  L  L
Sbjct: 212  RAFEDPRGNVFLRYLDLASELKPRYLVIENVRGLLSTPFPVESGGKPIRGGVMRYILNKL 271

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             EMGY V F +  A  FG +Q R+R  I  A    T  +W  P H    P+ K + + N 
Sbjct: 272  EEMGYGVSFNLYNAANFGAAQIRERVVI-IAKRDGTKCDWLIPTHT--DPDGKYVQNWNL 328

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
                            +T RD + D                          I  +    T
Sbjct: 329  P-------------SWVTFRDVVYD--------------------------IEDSRQTHT 349

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            D   K +   +++       + G  W+ LP E  + + G+   L                
Sbjct: 350  DFPEKRLLYFSML-------KEGQCWNKLPIEIQEEAMGKAYKL-----------GGGKT 391

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            G + R+ W+   PT +T P  M    +C HP + R L+V E  R QGFPD +   GSI  
Sbjct: 392  GFYRRIAWDRPSPTLVTSPT-MPATDLC-HPKELRPLSVEEYKRVQGFPDDWWIAGSIHD 449

Query: 1528 KHRQIGNAVPPTLAFALGRKL 1548
            ++RQIGNAVP +L  A+GR +
Sbjct: 450  QYRQIGNAVPVSLGEAIGRAI 470


>gi|386753565|ref|YP_006226783.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi112]
 gi|384559823|gb|AFI00290.1| cytosine specific DNA methyltransferase [Helicobacter pylori Shi112]
          Length = 281

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 146/334 (43%), Gaps = 55/334 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|376001427|ref|ZP_09779297.1| DNA (cytosine-5-)-methyltransferase [Arthrospira sp. PCC 8005]
 gi|375330256|emb|CCE15050.1| DNA (cytosine-5-)-methyltransferase [Arthrospira sp. PCC 8005]
          Length = 387

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 175/427 (40%), Gaps = 85/427 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S GL+ +G       +++++ A + F+ NHP++  +              
Sbjct: 11   IDLFSGAGGMSCGLEMAGFECL-LGVDFDKSAIQTFQNNHPQAETI-------------- 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  + +ST +  EL                 ++ I GGPPCQGFS +   N       
Sbjct: 56   CGDLRE-ISTEQIRELIGDR------------HINLICGGPPCQGFSTIGSNNNLDKRNF 102

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
               + L FL F +  QP Y ++ENV   +S     T    L  L  +GY V   +L A  
Sbjct: 103  ---LFLEFLRFVEQLQPDYIIIENVTGLLSRKNENTLTSILTCLQNIGYTVDVRVLSAHH 159

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV + R+R                   + F  P L         Y + +   N      
Sbjct: 160  YGVPEKRRRTIFLG--------------NRFGVPNL---------YPSPQFQDNEPDLDF 196

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +    T+G        A +  +EYQ             N  + T  I    N L   R Q
Sbjct: 197  LPAAKTVG-------FAWENWLEYQGKTY---------NHDLSTAQIP---NHLERQRIQ 237

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP+  G  +   PD++  L      D+    L  +  R  + K L  R  +     TS 
Sbjct: 238  HIPEGKGVRYQ--PDQQAYLPPELWYDIDWEKLRESRFRETKLKRL-ARDSYSPTINTSR 294

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T           +HP ++R LT RE A  Q FP ++ F+G++  + RQIGNAVPP LA A
Sbjct: 295  T---------TYYHPTENRYLTPREAAAIQSFPPNFIFYGTVTQQWRQIGNAVPPLLAKA 345

Query: 1544 LGRKLKE 1550
            LG+ + +
Sbjct: 346  LGKAMSK 352


>gi|408399430|gb|EKJ78533.1| hypothetical protein FPSE_01342 [Fusarium pseudograminearum CS3096]
          Length = 1348

 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 185/457 (40%), Gaps = 76/457 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILR 1178
            L  LD+F G G    GL+  G    +WA +Y+  A   +  N   P+             
Sbjct: 814  LRGLDLFCGGGNFGRGLEDGGGIEMRWANDYDGKALHTYMANTSGPD------------- 860

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
            AV    G  +D     +   +     ENV    P  G VDFI+GG PC GFS +     +
Sbjct: 861  AVHPFLGSIDDM----QRFAIQGKFTENV----PPVGDVDFISGGSPCPGFSLLTNDKTT 912

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV--SFNKGQ-TFRLTLASLLEMGYQVR 1295
               +    ++ AF SF D ++PRY LLENV   +    N+ Q  F   + +++ +GYQ +
Sbjct: 913  VAQRKNQSLVAAFGSFIDLYRPRYGLLENVPGIIHSKVNRDQDVFSQLICAIVGLGYQTQ 972

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS----- 1350
            F  L+A + G  Q R R F+  A+P   LP+ P   H  A PE     + NY        
Sbjct: 973  FFFLDASSCGSPQRRSRVFVVFAAPGHHLPQRPHITH--AHPE----HTKNYGLGSTPTG 1026

Query: 1351 ---AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDP---VSWFQKRIRGNMA 1404
               A R      PF  ++ R     LP V          Y + P   VS+   R+   M 
Sbjct: 1027 DPMAERIMPIATPFDFVSARAATAGLPPV----------YDSKPDICVSYPDHRVSIGMT 1076

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRP-----GADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
                  S   N+++L     IP RP        W  L  +K         D +    P  
Sbjct: 1077 ------SNLRNKISL-----IPTRPWGMNFAQAWFGLDCKKAASGVLSPADRL--VFPEE 1123

Query: 1460 AK----RHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQG 1514
             K    R       +GR   +    T +T   P   K G   H  ++R+LT+ E  R+QG
Sbjct: 1124 GKTSLTRGGPTSNAYGRQRPDRLIETIVTSQSPSDAKNGRTIHWSENRVLTIMEARRAQG 1183

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            F D     G+   + + +GN+V   +A +LG   +EA
Sbjct: 1184 FRDHEVLLGNPADQWKIVGNSVARQVAVSLGAVFREA 1220


>gi|313667088|gb|ADR72987.1| M2.BsmFI [Geobacillus stearothermophilus]
          Length = 365

 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 200/445 (44%), Gaps = 99/445 (22%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              + +F+G GGL  G + SG +   WAI+ ++ A   +K N  + ++L +     +  + 
Sbjct: 4    TVVSLFSGGGGLDLGFKNSGFNII-WAIDIDKDAVSTYKENLGDHIILGD-----ITKIQ 57

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
            EK                          ++P   + D + GGPPCQ FS  G  R +   
Sbjct: 58   EK--------------------------DIP---KADVVIGGPPCQSFSLVGKRRSDDE- 87

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL----EMGYQVR 1295
                + +++  +L   +  +P+ F+ ENV    S    +   L L  L+    E+GY+V+
Sbjct: 88   ----RGQLVWQYLRIINEIRPKCFVFENVVGLKSAKTAEG-NLVLDELIIAFREIGYEVQ 142

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            + +L A  +GV Q RKR FI   +       +P P H                       
Sbjct: 143  WSVLNAADYGVPQRRKRIFI-VGTREGVKFNFPLPTH--------------------NEK 181

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA--VLTDHISKE 1413
             +    + ++V + +GDLP+     +  I++Y  +P++ +Q ++R N     +T+H + +
Sbjct: 182  GDDGKLKWISVEEALGDLPSPN---TDGIVKYSKEPLTPYQLKMRENNFDDYVTEHSTPK 238

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            ++EL+ +  + IP   G ++ D+PD             +P      ++R  ++K   GR 
Sbjct: 239  LSELDKMIIEHIPV--GGNYMDVPD------------FVP------SQRIKKFKETGGRT 278

Query: 1474 DWEGNF----PT-SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH- 1527
               G      P+ +I        VG   H  + R++TVRE  R QGFPD+Y+   S +  
Sbjct: 279  TCYGRLRPDKPSYTINTYFNRPNVGCNIHYKEKRLITVREALRLQGFPDNYKIKSSTKRG 338

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAV 1552
            KH  +GNAVPP L+ A+ +K+ E++
Sbjct: 339  KHAIVGNAVPPILSEAIAKKVLESI 363


>gi|440636281|gb|ELR06200.1| hypothetical protein GMDG_07855 [Geomyces destructans 20631-21]
          Length = 1529

 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 184/449 (40%), Gaps = 64/449 (14%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLINNCNVILR 1178
            L  LD+F G G    GL+++G      A++    A   +  N   P +            
Sbjct: 727  LRGLDMFCGGGNFGRGLEEAGAIKFTHAVDMAPNAIATYYANTEDPTTTQFF-------- 778

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                 CG  +D +  + +  +  +L+      +PLPG +DFI  G PC G+S +N    S
Sbjct: 779  -----CGSVDDMLIKALSGNVEGALE------IPLPGDIDFIAAGSPCVGYSILNPNKDS 827

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVR 1295
                    +I    S  D+++P+Y LLENV       KG+   +    +  ++ MGYQ++
Sbjct: 828  AQGLKNQSLIADVASMIDFYRPKYALLENVLTMAQKGKGRNHDSLSQLICCIVGMGYQLQ 887

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
              +L+A +FG  Q R R F+  A+P   LP  P+  H            +      + + 
Sbjct: 888  VYVLDAWSFGSPQGRSRLFVSVAAPGFKLPPRPDCSHSHP---------NGTSDRGLGTM 938

Query: 1356 ANG----------APFRAMTVRDTIGDLPAVGNGASKTIMEYQND-PVSWFQKRIRGNMA 1404
            ANG           PF+ ++  +    LP +G+G      +Y +  P    +  +R +M 
Sbjct: 939  ANGKAFGERLFVETPFKFVSAAEATEHLPDIGDGHPGHCSQYPDHRPSRSPRDTLRQHMN 998

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
            +    I      +N I+  K     G   HD  +       G+             +RHN
Sbjct: 999  I----IPFSPPGMNFIKTWKNRHITGMTKHDYENFNTVTKKGK-------------QRHN 1041

Query: 1465 --QWKGLFGRLDWEGNFPTSITDPQP-MGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
              ++   +GR+     F T +T+  P   + G   H  Q R+LT+ E   +QGF      
Sbjct: 1042 AMEFSRAYGRIVPTSLFSTIVTNCSPENARSGRVLHWSQPRLLTIEEAKIAQGFVQGDAL 1101

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
             G+   +++  GN+V  T+A A G   +E
Sbjct: 1102 TGTRGEQYKIAGNSVARTVALAQGLSYRE 1130


>gi|183602700|ref|ZP_02964064.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219682526|ref|YP_002468909.1| modification methylase SinI [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|241190098|ref|YP_002967492.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241195504|ref|YP_002969059.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|384194654|ref|YP_005580399.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis V9]
 gi|387819961|ref|YP_006300004.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis B420]
 gi|452892171|ref|YP_005578846.2| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis BLC1]
 gi|183218118|gb|EDT88765.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219620176|gb|ACL28333.1| modification methylase SinI [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|240248490|gb|ACS45430.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240250058|gb|ACS46997.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|295793085|gb|ADG32620.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis V9]
 gi|386652662|gb|AFJ15792.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis B420]
 gi|447219165|gb|AEN75813.2| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis BLC1]
          Length = 453

 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 176/441 (39%), Gaps = 100/441 (22%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E+++  L  F+G GGL  G +++GIS+  +  E           N P+  +L        
Sbjct: 71   EDNICALSFFSGAGGLDLGFERAGISAALYC-ENNRECRMTLHRNRPDVALL-------- 121

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                   GD    +S  E   +A          +P   ++D + GGPPCQ FS      +
Sbjct: 122  -------GDITK-ISADEVRRMA---------RIPQGREIDVMFGGPPCQAFSTAG--AR 162

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN----------KGQTFRLTLASL 1287
              +   +  + L +L  A   +PRY ++ENVR  +S            +G   R  L  L
Sbjct: 163  RAFEDPRGNVFLRYLDLASELKPRYLVIENVRGLLSTPFPVESGGKPIRGGVMRYILNKL 222

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             EMGY V F +  A  FG +Q R+R  I  A    T  +W  P H    P+ K + + N 
Sbjct: 223  EEMGYGVSFNLYNAANFGAAQIRERVVI-IAKRDGTKCDWLIPTHT--DPDGKYVQNWNL 279

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
                            +T RD + D                          I  +    T
Sbjct: 280  P-------------SWVTFRDVVYD--------------------------IEDSRQTHT 300

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            D   K +   +++       + G  W+ LP E  + + G+   L                
Sbjct: 301  DFPEKRLLYFSML-------KEGQCWNKLPIEIQEEAMGKAYKL-----------GGGKT 342

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            G + R+ W+   PT +T P  M    +C HP + R L+V E  R QGFPD +   GSI  
Sbjct: 343  GFYRRIAWDRPSPTLVTSPT-MPATDLC-HPKELRPLSVEEYKRVQGFPDDWWIAGSIHD 400

Query: 1528 KHRQIGNAVPPTLAFALGRKL 1548
            ++RQIGNAVP +L  A+GR +
Sbjct: 401  QYRQIGNAVPVSLGEAIGRAI 421


>gi|384190309|ref|YP_005576057.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis BB-12]
 gi|384191445|ref|YP_005577192.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium animalis subsp.
            lactis CNCM I-2494]
 gi|289177801|gb|ADC85047.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
            lactis BB-12]
 gi|340364182|gb|AEK29473.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium animalis subsp.
            lactis CNCM I-2494]
          Length = 513

 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 176/441 (39%), Gaps = 100/441 (22%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E+++  L  F+G GGL  G +++GIS+  +  E           N P+  +L        
Sbjct: 131  EDNICALSFFSGAGGLDLGFERAGISAALYC-ENNRECRMTLHRNRPDVALL-------- 181

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                   GD    +S  E   +A          +P   ++D + GGPPCQ FS      +
Sbjct: 182  -------GDITK-ISADEVRRMA---------RIPQGREIDVMFGGPPCQAFSTAG--AR 222

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN----------KGQTFRLTLASL 1287
              +   +  + L +L  A   +PRY ++ENVR  +S            +G   R  L  L
Sbjct: 223  RAFEDPRGNVFLRYLDLASELKPRYLVIENVRGLLSTPFPVESGGKPIRGGVMRYILNKL 282

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             EMGY V F +  A  FG +Q R+R  I  A    T  +W  P H    P+ K + + N 
Sbjct: 283  EEMGYGVSFNLYNAANFGAAQIRERVVI-IAKRDGTKCDWLIPTHT--DPDGKYVQNWNL 339

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
                            +T RD + D                          I  +    T
Sbjct: 340  P-------------SWVTFRDVVYD--------------------------IEDSRQTHT 360

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            D   K +   +++       + G  W+ LP E  + + G+   L                
Sbjct: 361  DFPEKRLLYFSML-------KEGQCWNKLPIEIQEEAMGKAYKL-----------GGGKT 402

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            G + R+ W+   PT +T P  M    +C HP + R L+V E  R QGFPD +   GSI  
Sbjct: 403  GFYRRIAWDRPSPTLVTSPT-MPATDLC-HPKELRPLSVEEYKRVQGFPDDWWIAGSIHD 460

Query: 1528 KHRQIGNAVPPTLAFALGRKL 1548
            ++RQIGNAVP +L  A+GR +
Sbjct: 461  QYRQIGNAVPVSLGEAIGRAI 481


>gi|345867871|ref|ZP_08819872.1| DNA-cytosine methyltransferase family protein [Bizionia argentinensis
            JUB59]
 gi|344047793|gb|EGV43416.1| DNA-cytosine methyltransferase family protein [Bizionia argentinensis
            JUB59]
          Length = 387

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 186/456 (40%), Gaps = 101/456 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F+GCGGL+ G + +G + T  A + +E   + +  N P    + N         
Sbjct: 1    MQVVDLFSGCGGLALGFKWAGFN-TLLASDVDENCEKTYTHNFPNVPFIRN--------- 50

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                 D  D +ST+E         +++I+  P     D + GGPPCQGFS  N+      
Sbjct: 51   -----DLRD-ISTAEI--------KSIISRTP-----DVVIGGPPCQGFSLANKNRNKVK 91

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE--MGYQVRFGI 1298
            S  + E+   F+      QP+ F++ENVR  +S  KG+  +L         +GYQV + +
Sbjct: 92   SDPRNELFYEFVRVVTDLQPKAFVMENVRGLLSMQKGEVIKLMKEEFENAGIGYQVDYKV 151

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +GV Q+R R  +        L + P              L  N  Y         
Sbjct: 152  LLASDYGVPQNRHRVIMIGI--RKDLEKQP--------------LFPNKTYE-------- 187

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS-----KE 1413
                 +TV + I DLP +        M Y+ DP + FQ+ IR     + +HI+     + 
Sbjct: 188  ---NPVTVWEAISDLPQIKASEGDEKMMYETDPENNFQEFIRQENQKVYNHIAMRHTQRL 244

Query: 1414 MNELNLIRC----QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
            +N   +I+       + +  GA     P EK K+   Q               +NQ    
Sbjct: 245  INRFQVIKAGESLAHVSQEYGAVKRGNPKEKSKVVFSQ---------------NNQ---- 285

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH-- 1527
              RL      PT     Q         HP   R  T RE AR Q FPD++ F G      
Sbjct: 286  --RLRANKPAPTIAASFQ-----SNFIHPFLHRNFTAREGARLQSFPDNFIFQGMRTKMS 338

Query: 1528 ------KHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
                  +++QIGNAVPP L +A+ + L+E +    S
Sbjct: 339  WEKGLSQYQQIGNAVPPLLGYAIAKALQETLMGTES 374


>gi|423678621|ref|ZP_17653497.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis BS 01]
 gi|366041810|gb|EHN18291.1| site-specific DNA-methyltransferase [Bifidobacterium animalis subsp.
            lactis BS 01]
          Length = 436

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 176/441 (39%), Gaps = 100/441 (22%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E+++  L  F+G GGL  G +++GIS+  +  E           N P+  +L        
Sbjct: 54   EDNICALSFFSGAGGLDLGFERAGISAALYC-ENNRECRMTLHRNRPDVALL-------- 104

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                   GD    +S  E   +A          +P   ++D + GGPPCQ FS      +
Sbjct: 105  -------GDITK-ISADEVRRMA---------RIPQGREIDVMFGGPPCQAFSTAG--AR 145

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN----------KGQTFRLTLASL 1287
              +   +  + L +L  A   +PRY ++ENVR  +S            +G   R  L  L
Sbjct: 146  RAFEDPRGNVFLRYLDLASELKPRYLVIENVRGLLSTPFPVESGGKPIRGGVMRYILNKL 205

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             EMGY V F +  A  FG +Q R+R  I  A    T  +W  P H    P+ K + + N 
Sbjct: 206  EEMGYGVSFNLYNAANFGAAQIRERVVI-IAKRDGTKCDWLIPTHT--DPDGKYVQNWNL 262

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
                            +T RD + D                          I  +    T
Sbjct: 263  P-------------SWVTFRDVVYD--------------------------IEDSRQTHT 283

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            D   K +   +++       + G  W+ LP E  + + G+   L                
Sbjct: 284  DFPEKRLLYFSML-------KEGQCWNKLPIEIQEEAMGKAYKL-----------GGGKT 325

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            G + R+ W+   PT +T P  M    +C HP + R L+V E  R QGFPD +   GSI  
Sbjct: 326  GFYRRIAWDRPSPTLVTSPT-MPATDLC-HPKELRPLSVEEYKRVQGFPDDWWIAGSIHD 383

Query: 1528 KHRQIGNAVPPTLAFALGRKL 1548
            ++RQIGNAVP +L  A+GR +
Sbjct: 384  QYRQIGNAVPVSLGEAIGRAI 404


>gi|346308620|ref|ZP_08850731.1| hypothetical protein HMPREF9457_02440 [Dorea formicigenerans
            4_6_53AFAA]
 gi|345902488|gb|EGX72267.1| hypothetical protein HMPREF9457_02440 [Dorea formicigenerans
            4_6_53AFAA]
          Length = 423

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 191/466 (40%), Gaps = 78/466 (16%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN------ 1171
            EN L  +D+FAG GGLSEG  QSG       +E  E A +  +       +  N      
Sbjct: 3    ENGLNYIDLFAGAGGLSEGFIQSGYRPVA-HVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 1172 ----NCNVILRAVMEKCGDAE-DCVSTSEAAELAASLDENVINNLPLPGQVDFIN---GG 1223
                   +    ++EK    E   V   E +E       N I+++    ++D I+   GG
Sbjct: 62   YDYEKGKITREQLLEKIPKEELKTVINKEMSEATIKGIFNTIDDIKKEKEIDKIDVIIGG 121

Query: 1224 PPCQGFSGMNRFNQSTWSKV------QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            PPCQ +S + R  QS+   V      + E+   ++ F   ++PR F+ ENV    +   G
Sbjct: 122  PPCQAYSLVGR-AQSSHMIVPMEDDPRNELYKMYVQFLKKYKPRMFVFENVAGIKTARGG 180

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFA 1335
            Q F+     +  +GY++ +  L A  FGV QSRKR  I  W      T  E+P       
Sbjct: 181  QAFKNLQTYMKRVGYEIDYHELNAQDFGVLQSRKRVIIVGWLKG---TGYEYP------- 230

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                         +  + S A         V D + DLP +  G      E+  + +   
Sbjct: 231  ------------SFDVIHSKAE--------VWDLLKDLPPLTPGIEAR--EHTMNDMRRL 268

Query: 1396 QKRIRGNMA-----VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
            +K ++ N       VLT H ++     ++    +I KR    W +    K +L       
Sbjct: 269  KKYVKDNAIRMKSDVLTGHAARPHTAQDI----EIYKRTIDMWFENEQHK-RLKYDD--- 320

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTV 1506
                 LP   K H        R    EG+     T    + K G  F HPD  Q R +TV
Sbjct: 321  -----LPEDLKTHKNRTSFIDRFKVVEGDMDHCHTILAHLSKDGHYFIHPDIEQHRSITV 375

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            RE AR Q FPD+Y F G    +  Q+GNAVPP +A  +  K+KE +
Sbjct: 376  REAARIQSFPDNYYFEGPRTAQFVQVGNAVPPMMAKVIADKIKEQL 421


>gi|210610975|ref|ZP_03288684.1| hypothetical protein CLONEX_00874 [Clostridium nexile DSM 1787]
 gi|210152200|gb|EEA83207.1| hypothetical protein CLONEX_00874 [Clostridium nexile DSM 1787]
          Length = 423

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 192/467 (41%), Gaps = 80/467 (17%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN------ 1171
            EN L  +D+FAG GGLSEG  QSG       +E  E A +  +       +  N      
Sbjct: 3    ENGLNYIDLFAGAGGLSEGFIQSGYRPVA-HVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 1172 ----NCNVILRAVMEKCGDAE-DCVSTSEAAELAASLDENVINNLPLPGQVDFIN---GG 1223
                   +    ++EK    E   V   E +E       N I+++    ++D I+   GG
Sbjct: 62   YDYEKGKITREQLLEKIPKEELKTVINKEMSESTIKGIFNTIDDIKREKEIDKIDVIIGG 121

Query: 1224 PPCQGFSGMNRFNQSTWSKV------QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            PPCQ +S + R  QS+   V      + E+   ++ F   ++PR F+ ENV    +   G
Sbjct: 122  PPCQAYSLVGR-AQSSHMIVPMEDDPRNELYKMYVQFLRKYKPRMFVFENVAGIKTARGG 180

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFA 1335
              F+     +  +GY++ +  L A  FGV QSRKR  I  W      T  E+P       
Sbjct: 181  AAFKNLQTYMKRVGYEIDYHELNAQDFGVLQSRKRVIIVGWLKG---TGYEYP------- 230

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                         +  + S A         V D + DLP +  G     +E+    +   
Sbjct: 231  ------------SFDVIHSKAE--------VWDLLNDLPVLKPGEEA--IEHTMTDMRRL 268

Query: 1396 QKRIRGN-----MAVLTDHISKEMNELNLIRCQKIPKRPGADW-HDLPDEKVKLSTGQVV 1449
            +K ++ N       VLT HI++     ++    +I KR    W  +   E++K       
Sbjct: 269  KKYVKDNDIRVKSDVLTGHIARPHTAQDI----EIYKRTIDMWFENEQHERLKYDD---- 320

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILT 1505
                  LP   K H        R    EG+     T    + K G  F HPD  Q R +T
Sbjct: 321  ------LPEDLKTHKNRTSFVDRFKVVEGDMDHCHTILAHLSKDGHYFIHPDIEQHRSIT 374

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            VRE AR Q FPD+Y F G    +  Q+GNAVPP +A  +  K+KE +
Sbjct: 375  VREAARIQSFPDNYYFEGPRTAQFVQVGNAVPPMMAKVIADKIKEQL 421


>gi|208434021|ref|YP_002265687.1| cytosine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208431950|gb|ACI26821.1| cytosine specific DNA methyltransferase (putative type II)
            [Helicobacter pylori G27]
          Length = 281

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 145/333 (43%), Gaps = 55/333 (16%)

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG  
Sbjct: 2    IIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKAIKPEIFIIENVKNLISCAKGYF 59

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
                   L  +GYQ+ + IL    +GV Q+R+RAFI  AS                  + 
Sbjct: 60   LEEIKERLNALGYQLSYQILNVKDYGVPQNRERAFIVGASRFSF--------------DF 105

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
            K++                 P +++ V+D I DL  + +       +Y N   S +Q  +
Sbjct: 106  KLL----------------EPSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSNYQALM 149

Query: 1400 RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
            R +   L +H +   ++  L + + I K  G +                      CLP  
Sbjct: 150  RKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPKN 187

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
                 Q+K  +GRL+W    PT  T        G   HP+  R +T RE AR Q F D+Y
Sbjct: 188  LHGKQQFKSTWGRLNWNKISPTIDTRFDTPSN-GTNSHPELHRFITPREAARIQSFSDNY 246

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 247  IFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|409993543|ref|ZP_11276681.1| cytosine-specific DNA methylase [Arthrospira platensis str. Paraca]
 gi|79835459|gb|ABB52089.1| Mod [Arthrospira platensis]
 gi|409935626|gb|EKN77152.1| cytosine-specific DNA methylase [Arthrospira platensis str. Paraca]
          Length = 390

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 177/425 (41%), Gaps = 85/425 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S GL+ +G       +++++ A + F+ NHP++  +              
Sbjct: 10   IDLFSGAGGMSCGLEMAGFECL-LGVDFDKSAIQTFQNNHPQAETI-------------- 54

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  + +ST +  EL                 ++ I GGPPCQGFS +   N       
Sbjct: 55   CGDLRE-ISTEQIRELIGDR------------HINLICGGPPCQGFSTIGTNNNLDKRNF 101

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
               + L FL F +  +P Y ++ENV   +S     T    L  L  +GY V   +L A  
Sbjct: 102  ---LFLEFLRFVEQLKPDYIIIENVTGLLSRKNENTLTSILTCLQNIGYTVDVRVLSAHH 158

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV + R+R                   + F  P L         Y + +   N      
Sbjct: 159  YGVPEKRRRTIFLG--------------NRFGVPNL---------YPSPQFQDNEPDLYF 195

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +    T+G   A  N  +     Y +DP +          A + +H+ ++       R Q
Sbjct: 196  LPAAKTVGF--AWENWLTYQGKTYNHDPRT----------AQIPNHLERQ-------RIQ 236

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP+  G  +   PD++  L      ++    L  +  R  + K L GR  +     TS 
Sbjct: 237  HIPEGKGVRYQ--PDQQAYLPPDLWYNIDWEKLRESRFRETKLKRL-GRDSYSPTINTSR 293

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T           +HP ++R LT RE A  Q FP ++ F+G++  + RQIGNAVPP LA A
Sbjct: 294  T---------TYYHPTENRYLTPREAAAIQSFPPNFIFYGTVTQQWRQIGNAVPPLLAKA 344

Query: 1544 LGRKL 1548
            LG  +
Sbjct: 345  LGEAI 349


>gi|384895439|ref|YP_005769428.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
 gi|315586055|gb|ADU40436.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
          Length = 281

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 146/334 (43%), Gaps = 55/334 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGIKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNDGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|310796311|gb|EFQ31772.1| C-5 cytosine-specific DNA methylase [Glomerella graminicola M1.001]
          Length = 1141

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 188/460 (40%), Gaps = 93/460 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L   D+F G G    GL++ G+    WA +    A   +         + N  N     V
Sbjct: 616  LRGFDLFCGGGNFGRGLEEGGVIEMNWANDLNVKAIHTY---------MANTANT----V 662

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                G  +D  + +   + +          +P  G VDF++GG PC GFS +     +  
Sbjct: 663  YPFAGSIDDLQTLALQGKFS--------KKVPPVGSVDFVSGGSPCPGFSRLTNDKATPE 714

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFG 1297
             +    ++ AF SF D ++P++ LLENV + V     +    F   + +++ +GYQ  F 
Sbjct: 715  QRKNQSLVAAFASFIDVYRPKFGLLENVMDIVQTKTKRNEDVFSQLICAIVGLGYQTHFF 774

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST-- 1355
            I+++ A+G  QSR R F+  A+P   LPE P            I    +Y+    R T  
Sbjct: 775  IMDSWAYGSPQSRSRVFLCFAAPGLKLPEVP------------IQSHSHYESGKRRKTLG 822

Query: 1356 --ANG----------APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR-IRGN 1402
               NG           PF+ +++ +   DLP + +G +   + + +  +++   R  R  
Sbjct: 823  WLPNGEPMVERLEIPTPFKFVSIAEATADLPDIMDGKADCCVNFPDHRMAYSITRPARAQ 882

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRP-GADWHDLPDEKVKLSTGQVVDLIP----WCLP 1457
            ++V                   IP  P G ++    D      T     L P      L 
Sbjct: 883  LSV-------------------IPMHPWGMNFRTTWDNGKGTMTTAERGLFPSKGERVLS 923

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPTSI-----TDPQPM-GKVGMCFHPDQDRILTVRECAR 1511
             T++             W   FP S+     T P P   ++G   H +Q+R+L+V E  R
Sbjct: 924  PTSRA------------WGRAFPNSVMQTVTTTPSPTDARIGRVMHWNQNRVLSVMEVRR 971

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            +QGF D     G+ + + + +GN+V   ++ ALG   +EA
Sbjct: 972  AQGFLDHEVILGTPKEQWKVVGNSVAREVSLALGLSFREA 1011


>gi|309790027|ref|ZP_07684601.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG-6]
 gi|308227882|gb|EFO81536.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
          Length = 438

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 187/448 (41%), Gaps = 92/448 (20%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N L TLD+F G GG+S G + SG       I+ E  A    K N                
Sbjct: 55   NTLITLDLFCGAGGMSLGFE-SGNFFVAAGIDAEPAAVMTHKYN---------------- 97

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN-- 1236
              + K G A D    S+  EL A+L       LP   +VD I GGPPCQGF+ + +    
Sbjct: 98   -FLSK-GIACDIREISDPRELLATL------GLP---RVDVIIGGPPCQGFARIGKGKIR 146

Query: 1237 ----QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
                +S + +V   +   F+ F +  QP  F++ENV +   +  G+          +  Y
Sbjct: 147  SIELESHYEEVLNSLYKEFMRFVEILQPLAFVMENVPDMARYQNGEVLNRIRNKCTK--Y 204

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
             + + IL A  +GV Q R+R FI                           L  N ++  +
Sbjct: 205  TIEWRILNAVDYGVPQRRQRLFIQGNR-----------------------LGQNIRWPKI 241

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ-NDPVSWFQKRIRGNMA-----VL 1406
             +T      R +TVRD I DLP     + + I+ YQ    ++ +QK++R  +       +
Sbjct: 242  ETTN-----RFVTVRDAISDLPNRTPPSLEEILPYQPQHSLTEYQKKMREGLHEDHKDKI 296

Query: 1407 TDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQW 1466
              HI +++ E + +    +  R G  + D+P E  +  T    D               W
Sbjct: 297  FAHIIRQVREDDKLIFSIL--REGQKYRDIPTELQRYRTDIFDD-------------KYW 341

Query: 1467 KGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
            + ++ +  W      ++T            HP+  R L++RE AR Q FPD + F G   
Sbjct: 342  RLIYDQPSW------TVT-AHIRKDAYRYIHPEYSRTLSIREFARLQSFPDRFLFAGPRT 394

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAVES 1554
             + RQIGNAVPP LA A+  +L + + +
Sbjct: 395  ERLRQIGNAVPPLLAQAIAIELHQQLAT 422


>gi|420406179|ref|ZP_14905350.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6311]
 gi|393024200|gb|EJB25311.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6311]
          Length = 281

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 146/334 (43%), Gaps = 55/334 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVRALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKEKLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|158321055|ref|YP_001513562.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141254|gb|ABW19566.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 448

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 199/489 (40%), Gaps = 97/489 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F+G GGL+EG  + G       +E ++ A E  K       +   N   I    
Sbjct: 1    MVVIDLFSGAGGLTEGFMRQGFEIVAH-VEKDKWACETLKTRIIYHFLKSKNDLEIYFDY 59

Query: 1181 MEKCGDAEDCVSTSEAA-----ELAASLDENVINNL---PLP------------------ 1214
             ++     +   + +       E+   L   V+N     PL                   
Sbjct: 60   FKRVNGYRNIEESRQTIYRKYPEIKEKLQYEVLNKAFGNPLEEKNVTGIDEIIELLEDSL 119

Query: 1215 -----GQVDFINGGPPCQGFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
                    D I GGPPCQ +S  G  R      +  +  +   +     +F+PR F+ EN
Sbjct: 120  KYKNYSSTDLIIGGPPCQAYSLVGRGRMKDKAETDKRNYLFRYYKEIVKHFKPRMFIFEN 179

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFG--------ILEAGAFGVSQSRKRAFIWAAS 1319
            V   ++  KG+ F+  +    E+GY +  G        IL A  FGV QSRKR  ++   
Sbjct: 180  VPGILNAKKGEVFKSIVDEFKEIGYILLAGTNDDPKECILHASDFGVHQSRKRMILFGF- 238

Query: 1320 PHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV--G 1377
              D L                     NYQY   +  A    F  MT ++ IGDLP +  G
Sbjct: 239  -RDDL---------------------NYQYPDFKKYA--YSFENMTTKNAIGDLPKLKSG 274

Query: 1378 NGASKTIMEY---QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWH 1434
             G+    + Y   + + +S FQ+ +R +   + +H S+   E +L    +I K+      
Sbjct: 275  QGSDFDTLNYVSNEGESLSAFQRLMRADSIGVINHKSRSNQERDL----RIYKKA----- 325

Query: 1435 DLPDEKVKLS-TGQVVDLIPWCLPNTAKRHNQWKGLFGR--LDWEGNFPTSITDPQPMGK 1491
                  ++ + +G+   L+   +P   + H   K    R  +  +   P +I     + K
Sbjct: 326  ------IEFAESGK--RLMYTDIPEEDRTHKNEKAFLDRFKVHMKNEIPHTIV--AHISK 375

Query: 1492 VG-MCFHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
             G    HPD  Q R LTVRE AR Q FPD+Y F G    +  Q+GNAVPP +A A+ + +
Sbjct: 376  DGHYNIHPDINQCRSLTVREAARIQSFPDNYIFEGPRTAQFTQVGNAVPPLMAEAIAKAI 435

Query: 1549 KEAVESKRS 1557
            KE +  + S
Sbjct: 436  KEYLNKEIS 444


>gi|123965679|ref|YP_001010760.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
            9515]
 gi|123200045|gb|ABM71653.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
            9515]
          Length = 689

 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 196/457 (42%), Gaps = 87/457 (19%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS GL                         H  +  +I  C++   ++M 
Sbjct: 54   AVDLFSGAGGLSLGL-------------------------HRANFDVILACDIRNDSIMT 88

Query: 1183 K------CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS---GMN 1233
                   C    D        E+A  L+E         G++  I GGPPCQ FS      
Sbjct: 89   HRHHFGGCSYECDLSKRKVVNEIADKLNEC--------GEISLIAGGPPCQPFSRNIKWR 140

Query: 1234 RFNQSTWSKVQ------CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            + N+   ++ Q       E+  +F+S  +  +P+ FL+ENV +     + + FR  +   
Sbjct: 141  KHNEEVSAQHQELNEDRRELWESFISIVEQVKPKAFLMENVSDIAQGGEQEIFRSIINRA 200

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDN 1346
             + GY++   ++ A  +GV Q R R FI     ++  P +WP+P                
Sbjct: 201  EKAGYRIDPKLIYAWQYGVPQLRPRLFISGTKINECAPMKWPKPT--------------- 245

Query: 1347 YQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN--DPVSWFQKRIRGNMA 1404
              Y++V         +A+T+ D I DLP +  G ++   E  +   P++ +Q  +R  + 
Sbjct: 246  --YNSVD--------KAVTLEDAISDLPPLEGGWNEKWDERYSYGGPITPYQTSMREWLE 295

Query: 1405 ----VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                V+ DH+ +++ E +L    K+ +  G  +  L + + + S                
Sbjct: 296  IDDDVIHDHLIRKVREDDL-ETFKLMRSTGVKYSQLSEAQRRYSVTSRA-----FREGKK 349

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSY 1519
             + NQ      + +        +T    M K G  + HP Q+R L+VRE AR Q FPD +
Sbjct: 350  VKENQKNSFGDKYNILKPNEPCLTITAHMSKDGYWYIHPQQNRTLSVREAARVQSFPDGF 409

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
             FHG   ++  QIG AV P +A+ LG+ L +++++K+
Sbjct: 410  NFHGGPSNRFHQIGEAVAPIVAYELGKALIKSIKNKK 446


>gi|420398114|ref|ZP_14897327.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1962]
 gi|393014788|gb|EJB15959.1| cytosine-specific methyltransferase [Helicobacter pylori CPY1962]
          Length = 281

 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 143/330 (43%), Gaps = 55/330 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            Y F+G+     +QIGNAVPP LA ALG+ +
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAI 275


>gi|2865425|gb|AAC02665.1| chromomethylase [Arabidopsis thaliana]
 gi|2865430|gb|AAC02668.1| chromomethylase [Arabidopsis thaliana]
          Length = 560

 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 79/127 (62%), Gaps = 2/127 (1%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMHVFA 1335
             P H  A
Sbjct: 522  LPTHEVA 528



 Score = 40.8 bits (94), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGL----QQSGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|420539629|ref|ZP_15037948.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M5]
 gi|393147314|gb|EJC47639.1| cytosine-specific methyltransferase [Helicobacter pylori Hp M5]
          Length = 338

 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 158/348 (45%), Gaps = 59/348 (16%)

Query: 1209 NNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
            +NLP +P  +D + GGPPCQ +S + +         +  +   +L   D  +P+ F+ EN
Sbjct: 47   HNLPCVP--IDILLGGPPCQSYSTLGKRKMDE----KANLFKEYLRLLDLVKPKIFIFEN 100

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V   +S  KGQ F+    +  E GY +   IL A  +G  Q R+R  +       TL  +
Sbjct: 101  VVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDYGAPQVRERVILVG-----TLKSF 155

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
             +  H F  P +K   S                     ++D +GDLP + +G +   + Y
Sbjct: 156  KQKFH-FPKP-IKTHFS---------------------LKDALGDLPPIQSGENGDALGY 192

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
              +  + F + +R N   L++H S + NE  LI+  +  K  G    DLP E ++  +G 
Sbjct: 193  LKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQTLKD-GQSKDDLP-ESLRPKSGY 248

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
            +         NT          + ++ WE   PT IT          C HP   R L++R
Sbjct: 249  I---------NT----------YAKMWWEKPAPT-ITRNFSTPSSSRCIHPRDSRALSIR 288

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            E AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL   + + +  K
Sbjct: 289  EGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSAALAHAVFDFLRGK 336


>gi|2865428|gb|AAC02667.1| chromomethylase [Arabidopsis thaliana]
          Length = 560

 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 79/127 (62%), Gaps = 2/127 (1%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNRF--NQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            LPLPG V  + GGPPCQG SG NR+  N++     + + +L FL   D+ +P Y L+ENV
Sbjct: 402  LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
             + + F+KG   R  +AS + M YQ R G++ AG++G+ Q R R F+WAA P + LP +P
Sbjct: 462  VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521

Query: 1329 EPMHVFA 1335
             P H  A
Sbjct: 522  LPTHEVA 528



 Score = 40.8 bits (94), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 1124 LDIFAGCGGLSEGLQQ----SGIS-STKWAIEYEEPAGEAFKLNHPES 1166
            LD+++GCG +S G       SG+   TKW+++  + A ++ KLNHPE+
Sbjct: 228  LDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPET 275


>gi|284046510|ref|YP_003396850.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
 gi|283950731|gb|ADB53475.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
          Length = 424

 Score =  124 bits (311), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 187/463 (40%), Gaps = 97/463 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F G GGLS+GL  +G+     A +++  A   ++ N P ++++           
Sbjct: 7    LTAVDLFCGAGGLSQGLADAGMHVVA-AADHDPDACATYRRNFPRTVLV----------- 54

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFSGMNRFNQST 1239
                   E  +++ E  E  A LD        L G  +D + GGPPCQ +S + R +   
Sbjct: 55   -------EGDLTSREKHE--ALLD-------ALQGSDLDLLAGGPPCQAYSQV-RNHDRL 97

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL-LEMGYQVRFGI 1298
                +  +   F+      +PR  +LENV        G   R     L L+  Y V  G+
Sbjct: 98   IDDPRNRLYREFVGLLQEIRPRTLVLENVLGMSQLKGGAVRRQIEQDLSLQGAYDVISGV 157

Query: 1299 LEAGAFGVSQSRKR-AFIWAASPHDTLPEWPEPMHVFAA--------PELKIMLSDNYQY 1349
            L+AG FG  Q R R  FI   +     P  PE   +  A        P   +   D   +
Sbjct: 158  LDAGDFGTPQRRPRLVFIGVRTDIGVAPGLPEGTGLSRALRNGHSGQPTEALFSLDRPLH 217

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
              +    +    RA+TV+  + DL   G+        Y + P S +Q+ +R    V  DH
Sbjct: 218  EVLTDPGDR---RAVTVQQALSDLIEPGD-------VYSSRPQSAYQRWMRVKSKVPQDH 267

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR------- 1462
                + E    R Q IP  PG + +DLP+E ++   G       W      +R       
Sbjct: 268  TPSAIREDTRRRLQAIP--PGGNVYDLPEELLRRYLGDS----KWGPAGNGERLARRHFY 321

Query: 1463 -----HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD 1517
                 H  W      L W  N            K    +H +  R L+VRE AR QGFPD
Sbjct: 322  AYRRLHPDW------LAWTAN-----------TKADFAYHYEVARGLSVREAARIQGFPD 364

Query: 1518 SYQF------------HGSIQHKHRQIGNAVPPTLAFALGRKL 1548
             + F            +G+   ++RQ+GNAVPP LA A+GR +
Sbjct: 365  RFHFVTAPKGTPGQLRNGARHSRYRQVGNAVPPPLAAAIGRSV 407


>gi|427708365|ref|YP_007050742.1| DNA-cytosine methyltransferase [Nostoc sp. PCC 7107]
 gi|427360870|gb|AFY43592.1| DNA-cytosine methyltransferase [Nostoc sp. PCC 7107]
          Length = 413

 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 188/442 (42%), Gaps = 77/442 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG+S G +Q+G      A+E +       + N P       +C V+      
Sbjct: 8    AVDLFAGAGGMSLGFEQAGFDVLA-AVEIDPIHCATHEFNFP-------SCTVL------ 53

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C   ED  +T E     A + +          ++D +  G PCQGFS M +     +  
Sbjct: 54   -CKSVED--TTGEEIRQRAKIGDR---------EIDAVICGSPCQGFSLMGK---RVFDD 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             +  ++  F       QP+YF++ENVR        Q  +  ++     GYQV   + +L 
Sbjct: 99   PRNSLVFHFHRLVLELQPKYFVMENVRGITVGEHKQILKSLISEFQSHGYQVEENYQVLN 158

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV QSR+R F+  A     LP++P+ +   A P   I               N  P
Sbjct: 159  AAHYGVPQSRERLFLLGARRDVKLPKYPKAITQIAKPNQLI-------------KKNALP 205

Query: 1361 FRAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
              + TV D IGD+P V N +        + EY     S +   +RG   +  ++      
Sbjct: 206  L-SPTVWDAIGDIPEVENYSDLLEKDWVVAEYGKP--SDYAMILRGISTLADNYACDRQF 262

Query: 1416 ELNLI----RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            +  ++    R +  P         L  E+  +S  +   L P  + NT +         G
Sbjct: 263  DARILSSSFRTKHSPTTIQRFQETLQGEREPIS--RFHKLHPAGVCNTLRA--------G 312

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
               + G+F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ
Sbjct: 313  TDRYRGSF----TSPRPI-------HPFTPRCITVREAARLHSYPDWFRFHITKWHGFRQ 361

Query: 1532 IGNAVPPTLAFALGRKLKEAVE 1553
            +GN+VPP LA A+ +++  +++
Sbjct: 362  VGNSVPPLLAKAVAQEIIRSLK 383


>gi|46138503|ref|XP_390942.1| hypothetical protein FG10766.1 [Gibberella zeae PH-1]
          Length = 1343

 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 183/457 (40%), Gaps = 76/457 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PESLMLINNCNVILR 1178
            L  LD+F G G    GL+  G    +WA +Y+  A   +  N   P+             
Sbjct: 809  LRGLDLFCGGGNFGRGLEDGGGIEMRWANDYDGKALHTYMANTSGPD------------- 855

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
            AV    G  +D    +   + A         N+P  G VDFI+GG PC GFS +     +
Sbjct: 856  AVHPFLGSIDDMQRFAIQGKFA--------ENVPPVGDVDFISGGSPCPGFSLLTNDKTT 907

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV---SFNKGQTFRLTLASLLEMGYQVR 1295
               +    ++ AF SF D ++PRY LLENV   +   +      F   + +++ +GYQ +
Sbjct: 908  VAQRKNQSLVAAFGSFIDLYRPRYGLLENVPGIIQSKATRDQDVFSQLICAIVGLGYQTQ 967

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS----- 1350
            F  L+A + G  Q R R F+  A+P   LP+ P   H  A PE     + NY        
Sbjct: 968  FSFLDASSCGSPQRRSRVFVVFAAPGHHLPQRPHITH--AHPEH----TRNYGLGSTPTG 1021

Query: 1351 ---AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDP---VSWFQKRIRGNMA 1404
               A R      PF  ++ R     LP V          Y + P   VS+   R+   M 
Sbjct: 1022 DPMAERIMPIATPFDFVSARAATAGLPPV----------YDSKPDICVSYPDHRVSIGMT 1071

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRP-----GADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
                  S   N+++LI     P RP        W  L  ++         D +    P  
Sbjct: 1072 ------SNLRNKISLI-----PTRPWGMNFAQAWFGLDCKQAGSGVLSPADRL--VFPEE 1118

Query: 1460 AK----RHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQG 1514
             K    R       +GR   +    T +T   P   K G   H  ++R+LT+ E  R+QG
Sbjct: 1119 GKTSLTRGGATSNAYGRQRPDRLIETIVTSQSPSDAKNGRTIHWSENRVLTIMEARRAQG 1178

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
            F D     G+   + + +GN+V   +A +LG   +EA
Sbjct: 1179 FRDHEVLLGNPADQWKIVGNSVAREVAVSLGAVFREA 1215


>gi|428314093|ref|YP_007125070.1| DNA-methyltransferase Dcm [Microcoleus sp. PCC 7113]
 gi|428255705|gb|AFZ21664.1| DNA-methyltransferase Dcm [Microcoleus sp. PCC 7113]
          Length = 431

 Score =  124 bits (311), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 188/462 (40%), Gaps = 99/462 (21%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              +D+FAG GG S G++Q+G      A+E++   G     N P++ +L  +       V 
Sbjct: 8    VAIDLFAGAGGFSLGIEQAGFDVAV-AVEHDPIHGLVHAFNFPQTKVLCAD-------VA 59

Query: 1182 EKCG-DAEDCVSTSEAAELAASLD-ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            +  G D +  V    A     +    + ++ +P    +D + GGPPCQGFS + +     
Sbjct: 60   QLSGQDIQKAVGEWAAKNRQPTGSRHDPLSTIP----IDLVFGGPPCQGFSVIGK---RQ 112

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FG 1297
               V+  +I  F       QPRYF++ENV               +      GY++     
Sbjct: 113  LDDVRNTLIFEFCRIVKELQPRYFVMENVPGLRMPKYSPILEQLMCEFEAAGYEITEPIQ 172

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            +L A  FGV Q R+R F+           +PEP       +L+                 
Sbjct: 173  VLNAANFGVPQQRRRLFVLGTQVGLNKLTYPEP-------DLR----------------- 208

Query: 1358 GAPFRAMTVRDTIGDLPAVGN-GASKTIMEYQNDP---------VSWFQKRIRG------ 1401
             +P + +TV+D I DLP + +      I   Q  P          + + KR+RG      
Sbjct: 209  -SPSQYITVKDAIADLPNLDDFDELHHIDSIQLTPEQLYSIHEQATVYVKRLRGLSCDLT 267

Query: 1402 --------NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIP 1453
                    N   LT  +     E ++ R Q+ P  PG           K+ +   +  + 
Sbjct: 268  NFAYSRWWNPTTLTSSMQTRHTERSIERFQETP--PG-----------KIESISRLRRLD 314

Query: 1454 WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQ 1513
            W  P    R              G+   + T P+P+       HP+  R+++VRE AR  
Sbjct: 315  WHKPCYTLRAG-----------TGSDRGAYTSPRPI-------HPEYPRVISVREAARLH 356

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             FPD ++FH +  H  R++GNAVPP LA ALG ++  A+E K
Sbjct: 357  SFPDWFRFHITKWHGFREVGNAVPPLLARALGSQILAALEVK 398


>gi|427723401|ref|YP_007070678.1| DNA-cytosine methyltransferase [Leptolyngbya sp. PCC 7376]
 gi|427355121|gb|AFY37844.1| DNA-cytosine methyltransferase [Leptolyngbya sp. PCC 7376]
          Length = 401

 Score =  124 bits (311), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 191/451 (42%), Gaps = 99/451 (21%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            A LD+F G GG+S G Q++G       I++   A      N P+                
Sbjct: 10   AVLDVFCGAGGMSLGFQRAG-CKILGGIDHNPHAVTTHHQNFPK---------------- 52

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
                    C    EA ++    D   +N  P   +VD + GGPPCQ FS  G+ +     
Sbjct: 53   --------CKLKLEATDIRTLEDLPSLNLQP--REVDILIGGPPCQVFSRVGLGKMKHDL 102

Query: 1240 WSKVQCE----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
               ++ +    +   ++ F DY+QP +F++ENV N    NK +     L  L   GY+V 
Sbjct: 103  KWDIEKDHRNFLYKEYVRFVDYYQPFFFVMENVDNLA--NKKELLSTILDELAACGYKVE 160

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            + +L++  FGV Q R+R F+      D L  W EP  +F  P  +               
Sbjct: 161  YEVLDSSKFGVPQRRRRIFLIGVR-SDLL--W-EP--IFPKPSGQ--------------- 199

Query: 1356 ANGAPFRAMTVRDTIGDLPAV------------GNGASKTIMEYQNDPVSWFQKRIR-GN 1402
                  +A +V D I DLP +            G       + Y+ +P S +Q+++R  N
Sbjct: 200  ------KAFSVGDAISDLPELKPIILSLKSKSRGPRQKDCDLLYRGEPESIYQQKMRRHN 253

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
               + +H+ +  N+ +L   + +  + G  + DLP+E ++                   R
Sbjct: 254  GDRVRNHLCRAHNDKDLEIFKTL--KQGGKYRDLPEEMMRY------------------R 293

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQF 1521
             + +   + RL W+     S T    M K  + + HP Q R ++VRE AR Q FPD++ F
Sbjct: 294  VDIFDDKYHRLYWDK---PSWTLTAHMRKDCLAYIHPLQTRSISVREAARIQSFPDNFVF 350

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
               +      IGN+VPP LA A+ + + + +
Sbjct: 351  QAPMTRMFELIGNSVPPLLAEAVAKPIVKLI 381


>gi|325270471|ref|ZP_08137073.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
 gi|324987194|gb|EGC19175.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
          Length = 398

 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 180/435 (41%), Gaps = 95/435 (21%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             LD+F GCGG+S G +++G       I+  + A   ++ NH    +L             
Sbjct: 57   VLDLFCGCGGMSYGFEKAGFD-VLLGIDVWKDALVTYQHNHRSGGVL------------- 102

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C D    +S     E+   L            QVD I GGPPCQGFS   +        
Sbjct: 103  -CAD----LSVITGKEVGQHLGGK---------QVDVIIGGPPCQGFSVAGK---RIVDD 145

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + ++   F+     F P+ F++ENV N ++   G      +    E+GY+V + +L A 
Sbjct: 146  DRNKLYKGFVRMVSCFHPKAFVMENVPNILTIGNGVIKESIIKDFSELGYKVSYKVLLAS 205

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +GV Q+R+RA I+      T  E+     VF +P L+                      
Sbjct: 206  DYGVPQNRRRA-IFVGMLDGT--EF-----VFPSPTLET--------------------- 236

Query: 1363 AMTVRDTIGDLP--AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
             +T ++ I DLP  ++  G      EY  DP S +QK +R     + +H     NE    
Sbjct: 237  PVTCKEAISDLPEDSLPEGG-----EYPADPQSEYQKLMREGSDGVYNHEITVHNERTKE 291

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                +P   G ++ DLP E                L NT K H  W  L          P
Sbjct: 292  IIAMVPD--GGNYKDLPIE----------------LQNTRKVHIAWTRL------NSMRP 327

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            +   D          FH + +R+ T RE AR Q FPD++ F G+   K +QIGNAVPP +
Sbjct: 328  SLTIDTGHFHH----FHYEYNRVPTARESARIQSFPDTFVFIGNKTSKLKQIGNAVPPFM 383

Query: 1541 AFALGRKLKEAVESK 1555
            A A+  ++ + ++ K
Sbjct: 384  AQAIAGQILKHLKQK 398


>gi|420522621|ref|ZP_15021045.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-11b]
 gi|393129578|gb|EJC30012.1| DNA (cytosine-5-)-methyltransferase family protein [Helicobacter
            pylori Hp P-11b]
          Length = 326

 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 163/365 (44%), Gaps = 65/365 (17%)

Query: 1195 EAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS 1253
            EA  +   + +   +NLP +P  +D + GGPPCQ +S + +         +  +   +L 
Sbjct: 21   EAQTILCDIAQLHCHNLPCVP--IDILLGGPPCQSYSTLGKRKMDE----KANLFKEYLR 74

Query: 1254 FADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
              D  +P+ F+ ENV   +S  KGQ F+    +  E GY +   IL A  +GV Q R+R 
Sbjct: 75   LLDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDYGVPQIRERV 134

Query: 1314 FIWAASPHDTLPE---WPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTI 1370
             +     H +  +   +P+P+                                 +++D +
Sbjct: 135  ILVGI--HKSFKQKFHFPKPIKTH-----------------------------FSLKDAL 163

Query: 1371 GDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPG 1430
            GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +  K  G
Sbjct: 164  GDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQTLKD-G 220

Query: 1431 ADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
                DLP E ++  +G +         NT          + ++ WE   PT IT      
Sbjct: 221  QSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-ITRNFSTP 259

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
                C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL   + +
Sbjct: 260  SSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAALAHAVFD 319

Query: 1551 AVESK 1555
             +  K
Sbjct: 320  FLRGK 324


>gi|79835456|gb|ABB52087.1| Mod [Arthrospira platensis]
          Length = 443

 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 188/463 (40%), Gaps = 74/463 (15%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            ++D+FAG GG++ G +  G     +A + ++ A      NHPE++               
Sbjct: 8    SIDLFAGAGGMTTGFKNQGFK-LLFANDCDQAALATLSHNHPEAM--------------- 51

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                     ++SE+ E     +     NL   G +D + GGPPCQGFS    + +     
Sbjct: 52   ---------TSSESIESLNPFELRQTLNL-RKGDLDILLGGPPCQGFS---TYGKRDPLD 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  +   FL F + F+P+ F++ENV   +S   G      +    ++ Y V    L+A 
Sbjct: 99   QRNRLYRYFLKFLEEFRPKAFVMENVVGILSLEGGYVVEDIVNKAEKLNYGVSVITLDAV 158

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             FGV Q RKR FI   S H  + + P   H  +    K   S +YQ      + +     
Sbjct: 159  DFGVPQFRKRVFILGGSNHQKI-QPPSATHEISKNTSKPD-SSSYQLCLFPESLDPPYQP 216

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW---FQKRIRGNMAVLTDHISKEMNELNL 1419
            A+ V + IGDLP        T       PVS    +Q+ +R     +  H +K M  +  
Sbjct: 217  AIKVSEAIGDLPEEVLPPRLTHESIPYPPVSGLSRYQQELRSKTGEILHHSAKRMMGIRR 276

Query: 1420 IRCQKIPKRPGADWHDLPDEKVK------------LSTGQVVDLIPWCLPNTAKRHNQWK 1467
            +R   +  RPG D+      ++K            L  G  +  I  C     ++  + +
Sbjct: 277  LRLALM--RPG-DYGTEISSRLKEGGFSRELIDQLLKGGNGLRDIHECRRQDREKEEKLR 333

Query: 1468 GL-----------------------FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1504
             +                       + RLDW  N P+               HP+ DR+ 
Sbjct: 334  EILQQGHVDIQEVLQSLDSGGFANKYRRLDW--NAPSHTLVAHMARDCSDFIHPEFDRVN 391

Query: 1505 TVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            +VRE AR Q  PD Y FHGS   + +QIGNAVPP LA A+  +
Sbjct: 392  SVRESARLQSCPDRYYFHGSQFQQFKQIGNAVPPKLAEAIASR 434


>gi|14330659|emb|CAC41108.1| site-specific DNA-methyltransferase (cytosine-specific) [Klebsiella
            pneumoniae]
          Length = 375

 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 188/445 (42%), Gaps = 101/445 (22%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            +  N L  ++ F G GG+S GL+Q+G    + A +  E A E +  N       ++   V
Sbjct: 5    NTSNKLTCIEGFCGAGGMSLGLKQAGFD-VRLAFDINENAVETYNKNIGNHCEKLDASIV 63

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
              + ++EK G                           +  ++D  +GGPPCQGFS   R 
Sbjct: 64   SGKFLLEKAG---------------------------IKTRLDLFSGGPPCQGFSKQRR- 95

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
                    + +++L +    +  +PR FL ENV  F    +G+     + S L   Y + 
Sbjct: 96   GAHLLDDDRNKLVLEYSRLVNELKPRAFLFENVEIFGQ-KRGKDLIDEIKSKL-FDYNIY 153

Query: 1296 FGILEAGAFGVSQSRKRAFIWA--ASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
               + +  FGV+Q R R  +     S    +P              K++ SD        
Sbjct: 154  TYFICSSDFGVAQKRGRFLMIGIDKSEGKIVP--------------KLLKSD-------- 191

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
                    + +T+RD IG LP           +Y+  P              + +HI  +
Sbjct: 192  --------KTLTIRDVIGQLPPPPE-------DYKEHPD-------------IPNHIKCK 223

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            + ++N  R   +P  PG  W D+P + ++L   Q VD        TA     W  ++GRL
Sbjct: 224  ITKINEERFSHVP--PGGGWKDIPYD-LRLKCHQKVD--------TAS--GGWPDVYGRL 270

Query: 1474 DWEGNFPTSIT--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            +W+   PT     D    G+ G   HP Q+R +T+RE A  QGFP +Y+F+G+      Q
Sbjct: 271  EWDKQCPTITAGFDSFTRGRYG---HPSQNRAITLREGAMLQGFPVNYRFYGNRDAIRLQ 327

Query: 1532 IGNAVPPTLAFALGRKLKEAVESKR 1556
            IGNAVPP +++A G  +   +++K+
Sbjct: 328  IGNAVPPPVSYAAGTAIINCLDTKQ 352


>gi|357048861|ref|ZP_09110094.1| hypothetical protein HMPREF9478_00077 [Enterococcus saccharolyticus
            30_1]
 gi|355384684|gb|EHG31745.1| hypothetical protein HMPREF9478_00077 [Enterococcus saccharolyticus
            30_1]
          Length = 333

 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 179/430 (41%), Gaps = 107/430 (24%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            + +F+G GG+  G ++   ++  +++E+++   + ++ N P + + +             
Sbjct: 7    ISLFSGAGGMDLGFEKENFTNV-FSVEFDKKIAKTYEKNFPNNNLFV------------- 52

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD  D             +D   IN L     VD + GGPPCQGFS      +      
Sbjct: 53   -GDIRD-------------VDNKKINELMGNEIVDVVIGGPPCQGFSMAGNIGRKFVDDP 98

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + ++   F+   +  QP+ F++ENV    + NKGQT +  +    ++GY   + +L+A  
Sbjct: 99   RNQLFKEFVRVVNETQPKIFVMENVARLQTHNKGQTIKEIIDEFEKVGYYSTYKVLQAAD 158

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+R FI      D   ++PE                                  
Sbjct: 159  YGVPQKRQRIFIVGTKDPDFEFKFPEGFGT-----------------------------T 189

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +TV++ IG+LP + +G    +                      T+H +   +E  L +  
Sbjct: 190  VTVKEAIGNLPPLKSGEVSNV----------------------TNHFAMNHSEQMLEKMS 227

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             +    G D +++P+E ++  +G +   I         R++  K              S+
Sbjct: 228  YVSD--GGDRNEIPEE-IRPKSGDIRKYI---------RYSSDK-------------PSV 262

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T    M K+   FH +Q+R LT RE AR Q FPD + F G      +QIGNAVPP LA  
Sbjct: 263  TVTGDMRKI---FHYNQNRALTPRELARLQTFPDVFIFEGDSISIQQQIGNAVPPKLAEV 319

Query: 1544 LGRKLKEAVE 1553
            + +++  ++E
Sbjct: 320  VAKEVYRSLE 329


>gi|385248556|ref|YP_005776775.1| cytosine specific DNA methyltransferase [Helicobacter pylori F57]
 gi|317181351|dbj|BAJ59135.1| cytosine specific DNA methyltransferase [Helicobacter pylori F57]
          Length = 281

 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 142/330 (43%), Gaps = 55/330 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L  +      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDSRNFLFLEHIEIVKALKPEIFIIENVKNLISCTKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKEKLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ ++D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNIQDVISDLAYLCSNEGAFESDYLNPIQSSYQVL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            Y F+G+     +QIGNAVPP LA ALG+ +
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAI 275


>gi|400598697|gb|EJP66406.1| DNA methyltransferase Dim-2 [Beauveria bassiana ARSEF 2860]
          Length = 1142

 Score =  123 bits (309), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 179/448 (39%), Gaps = 54/448 (12%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  LD+F G G    GL++ G  + KWA +    A   +  N                 +
Sbjct: 683  LRGLDLFCGGGNFGRGLEEGGSVTMKWANDVNSKALHTYMANTEPG------------QI 730

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                G  +D    +     A        +N+P  G+VDFI+GG PC GFS +    ++  
Sbjct: 731  YPFLGSIDDFQRLAFQGRFA--------DNIPQVGEVDFISGGSPCPGFSQLTNDKETDA 782

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVS--FNKGQ-TFRLTLASLLEMGYQVRFG 1297
             +    ++ AF S  D ++P+Y +LENV   +    N+G   F   + +L+ MGYQ R  
Sbjct: 783  QRKNQSLVAAFASCVDLYRPKYGILENVAGIIQKHQNRGHDVFSQLMCALVGMGYQARLV 842

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA--APELKIMLSDNYQYSAVRST 1355
            +L+A + G +Q R R FI  A+P  TLPE P   H         K+      +  A R  
Sbjct: 843  LLDALSCGSAQVRSRVFIIFAAPGWTLPEAPIQTHSHQPNVKNFKLGRLPTGEPMARREV 902

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
            A+  PF   +       LP++ +      + + +  V                 +S    
Sbjct: 903  ASCTPFSYKSASQAAAGLPSLYDATPDICIAFPDHRV-----------------VSHTNT 945

Query: 1416 ELNLIRCQKIPKRP-----GADWHDLPDEKVKLSTGQVV-----DLIPWCLPNTAKRHNQ 1465
                 R + IPK P        W+     + +++   V+     ++       T     Q
Sbjct: 946  NTMRNRIRLIPKAPYGMNFSQAWYGRLGTRPRVAGRGVLTRSERNMFSLRGEATMSTSIQ 1005

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS 1524
             +  +GR        T +T   P   K G   H  +DR L+V E  R QGF D     GS
Sbjct: 1006 SRA-YGRQPPNQPMATIVTRASPRDAKQGRTIHWSEDRCLSVMEAKRGQGFLDEELLLGS 1064

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
               ++R IGN+V   ++ ALG    EAV
Sbjct: 1065 ADVQYRIIGNSVAREVSLALGVVFAEAV 1092


>gi|325678040|ref|ZP_08157677.1| putative modification methylase BspRI [Ruminococcus albus 8]
 gi|324110257|gb|EGC04436.1| putative modification methylase BspRI [Ruminococcus albus 8]
          Length = 358

 Score =  123 bits (309), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 177/441 (40%), Gaps = 93/441 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +   D+F GCGG S+G Q +G    K  I+  + A   +  N P ++ +  + + +    
Sbjct: 1    MNVFDLFCGCGGFSKGFQSAGFD-IKLGIDIWQDAITTYNHNFPNAVTITEDISNL---- 55

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                   ED +S    A L A              +VD I GGPPCQGFS   +      
Sbjct: 56   -----KGEDLLS---RANLTAD-------------EVDVIIGGPPCQGFSLSGKRMIDDP 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
              +   +  +F+      QP+ F++ENV   V   KG+     +     +GY+V  G L 
Sbjct: 95   RNI---LYKSFVRMVSDIQPKIFVMENVPGLVKLFKGKVKDQVIEDFSNLGYEVTLGQLT 151

Query: 1301 AGAFGVSQSRKRAFIWAAS----PHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
            A  +GV Q+RKR F    +     H     +P P H                        
Sbjct: 152  ACDYGVPQARKRVFFVGVNKSKIKHTEKFVFPTPTH------------------------ 187

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIME----YQNDPVSWFQKRIRGNMAVLTDHISK 1412
             G     +T +D I DL  +G+    T+++    YQ    + +Q  +R N   L +H++ 
Sbjct: 188  -GDKIAYVTCKDAISDLDFIGD---TTLLQEHDAYQISAQNEYQVMMRKNAKELLNHVTT 243

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
               E        +P   G ++  LP+E                L  T K +  W     R
Sbjct: 244  IHTEKTRSIIALVPD--GGNYKSLPEE----------------LQQTRKVNIAWT----R 281

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            +D +   P    D          FH   +R+ TVRE AR Q FPD ++F G    + +Q+
Sbjct: 282  MDSQK--PCFTIDTGH----NHHFHYRANRVPTVRESARIQSFPDDFEFIGIKTSQLKQV 335

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAVPP LA A+   + + ++
Sbjct: 336  GNAVPPLLAQAIATAVIDVIK 356


>gi|291571391|dbj|BAI93663.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 390

 Score =  123 bits (309), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 111/425 (26%), Positives = 176/425 (41%), Gaps = 85/425 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S GL+ +G       +++++ A + F+ NHP++  +              
Sbjct: 10   IDLFSGAGGMSCGLEMAGFECL-LGVDFDKSAIQTFQNNHPQAETI-------------- 54

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  + +ST +  EL                 ++ I GGPPCQGFS +   N       
Sbjct: 55   CGDLRE-ISTEQIRELIGDR------------HINLICGGPPCQGFSTIGTNNNLDKRNF 101

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
               + L FL F +  +P Y ++ENV   +S     T    L  L  +GY V   +L A  
Sbjct: 102  ---LFLEFLRFVEQLKPDYIIIENVTGLLSRKNENTLTSILTCLQNIGYTVDVRVLSAHH 158

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV + R+R                   + F  P L         Y + +   N      
Sbjct: 159  YGVPEKRRRTIFLG--------------NRFGVPNL---------YPSPQFQDNEPDLYF 195

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +    T+G   A  N  +     Y +DP +          A + +H+ ++       R Q
Sbjct: 196  LPAAKTVGF--AWENWLTYQGKTYNHDPRT----------AQIPNHLERQ-------RIQ 236

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP+  G  +   PD++  L      ++    L  +  R  + K L  R  +     TS 
Sbjct: 237  HIPEGKGVRYQ--PDQQAYLPPDLWYNIDWEKLRESRFRETKLKRL-ARDSYSPTINTSR 293

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T           +HP ++R LT RE A  Q FP ++ F+G++  + RQIGNAVPP LA A
Sbjct: 294  T---------TYYHPTENRYLTPREAAAIQSFPPNFIFYGTVTQQWRQIGNAVPPLLAKA 344

Query: 1544 LGRKL 1548
            LG  +
Sbjct: 345  LGEAI 349


>gi|297604073|ref|NP_001054957.2| Os05g0224800 [Oryza sativa Japonica Group]
 gi|57863807|gb|AAW56861.1| unknow protein [Oryza sativa Japonica Group]
 gi|255676144|dbj|BAF16871.2| Os05g0224800 [Oryza sativa Japonica Group]
          Length = 304

 Score =  123 bits (309), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 137/290 (47%), Gaps = 42/290 (14%)

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA-- 1356
            + AG +G+ Q R R F+      + LP +P P H       + ++ +    +  R+    
Sbjct: 1    MAAGCYGLPQFRMRVFLLGCHSKEKLPPFPLPTH-------EAIVKNGCPLAFERNLVGW 53

Query: 1357 -NGAPF---RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG-NMAV------ 1405
             N  P    R + + D + DLP V NG S+  M Y   P + FQ+ IR  N+ V      
Sbjct: 54   PNDTPMQLARPIVLEDILSDLPEVANGESRDEMLYVKGPQTEFQRYIRSFNVEVHGPRAH 113

Query: 1406 ---------LTDHISKEMNELNLIRCQKIPKRPGADWHDL------PDEKVKLSTGQVVD 1450
                     L DH    ++  N  R  +IPKR GA++ DL      PD   +L   +   
Sbjct: 114  VTKDSKSSKLYDHRPLVLDNDNYQRILQIPKRKGANFRDLSGVIVGPDNVARLDPTKERV 173

Query: 1451 LIPWCLP---NTAKRHNQWKGL--FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILT 1505
            L+P   P   +    +   K L  FGR+ W+    T +T P    ++    HP QDR+LT
Sbjct: 174  LLPSGRPLVLDCILAYENGKSLRPFGRVWWDEVVGTVLTVPN--ARMQALIHPAQDRLLT 231

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            +RE AR QGFPD+Y+F G+++ ++RQIGNAV   +  ALG  L  A   K
Sbjct: 232  IRESARLQGFPDNYRFRGTVKDRYRQIGNAVAVPVGRALGYALAMAYLKK 281


>gi|205360554|ref|ZP_02684441.2| modification methylase DdeI [Salmonella enterica subsp. enterica
            serovar Hadar str. RI_05P066]
 gi|417370248|ref|ZP_12141176.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
            serovar Hvittingfoss str. A4-620]
 gi|205348823|gb|EDZ35454.1| modification methylase DdeI [Salmonella enterica subsp. enterica
            serovar Hadar str. RI_05P066]
 gi|353582256|gb|EHC42962.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
            serovar Hvittingfoss str. A4-620]
          Length = 394

 Score =  123 bits (309), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 184/447 (41%), Gaps = 99/447 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  LD FAG GG S G   +G +    AIE +  A E FK NHPESL        +++  
Sbjct: 4    VKVLDTFAGAGGFSLGFHMAG-AEIIGAIEVDSWATETFKFNHPESL--------VIKKD 54

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            + +  D E              + E   NN P     D I GGPPCQGFS  N+ N    
Sbjct: 55   ISQFSDEE--------------ILETFKNNKP-----DIILGGPPCQGFSIANKKN-GDH 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFV-SFNKGQTFRLTLAS--LLEMGYQVRFG 1297
               +  +   FL       P   ++ENV N + +  K   F + +    L  +GY V   
Sbjct: 95   KDPRNSLFEEFLRIGRILSPMVMIMENVPNIIKAKTKDGIFVVDIIKEELSSLGYHVYHN 154

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            ILE+  FGV Q RKR FI A+      P +P+P H        I  SD  +         
Sbjct: 155  ILESTDFGVPQIRKRLFIIASRKELKNP-FPKPTH-------NITGSDGLK--------- 197

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                +  T+ D I DLP +        M+Y    ++ +QK++R N   +++H  K MN  
Sbjct: 198  ----KTPTLWDAISDLPQINAREGSEEMDYDKQALTDYQKQLRENSHKISNH--KAMNH- 250

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                     KR       L +    ++ GQ    +P  L    KR++  K +  ++  + 
Sbjct: 251  --------SKR-------LVERFSSMTWGQSTSDVPEHL-KPYKRNS--KEISEKVYDQN 292

Query: 1478 NFPTSITDPQPMGKVGMCF-----HPDQDRILTVRECARSQGFPDSYQFHGS---IQHK- 1528
            N    +   +P   +   F     HP  +R  T RE AR Q FPD Y F G    + HK 
Sbjct: 293  N--RRMHPNKPCHTIAASFYANFVHPYLNRNFTAREGARIQSFPDWYVFKGKPTVVSHKL 350

Query: 1529 --------------HRQIGNAVPPTLA 1541
                          + QIGNAVPP +A
Sbjct: 351  LQREGREDEKYLCQYNQIGNAVPPLMA 377


>gi|169600411|ref|XP_001793628.1| hypothetical protein SNOG_03039 [Phaeosphaeria nodorum SN15]
 gi|160705432|gb|EAT89770.2| hypothetical protein SNOG_03039 [Phaeosphaeria nodorum SN15]
          Length = 1146

 Score =  123 bits (308), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 189/460 (41%), Gaps = 84/460 (18%)

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLIN 1171
            G      L  + +F+G G L  G+++ G    +  +E++  A    + N  +P +     
Sbjct: 521  GTETTTKLVGMSLFSGGGNLDRGIEEGGAVDVQTVVEWDAAAIHTQRANARNPTTQQFF- 579

Query: 1172 NCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSG 1231
                        CG  +D +S +    +A S D+ V    P  G V+ I  G PC GFS 
Sbjct: 580  ------------CGSVDDHLSMA----IAGSDDQLV----PYIGCVNIILAGSPCPGFST 619

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG----QTFRLTLASL 1287
            + +   S  S      I    S+ D ++P Y +LENV +     KG          +A  
Sbjct: 620  LQQNFTSPQSIKNASHITTICSYVDIYRPEYAILENVVSMADTRKGFEDQNVLSQLVAFF 679

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
            + +GYQV   I++A  FG  Q R R  +  A+P   L    +P+H  + P       D+ 
Sbjct: 680  VSLGYQVNQYIMDAWTFGSCQRRSRLILTIAAP--GLDMIRQPLHTHSLPP------DDT 731

Query: 1348 QYSAVRSTANG----------APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK 1397
               ++ +  NG           PF   +      DLP +GNG  +T + + +  VS    
Sbjct: 732  AARSLGTLPNGQRFGGREYYPTPFTHFSANTATSDLPDIGNGNVQTCISHPSHRVSAQPS 791

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
            R             KE   L+LI    IP  PG  + +  ++ +          IP  L 
Sbjct: 792  R-------------KERALLDLI--PHIP--PGCGYREAYNQGI----------IPLVLQ 824

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPT-----SITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
               K  ++    + R+      PT     SI D     + G   H  Q+R +T+ E  R+
Sbjct: 825  KPGKESDR---AYQRIRKAALIPTITTGLSIQD----SRNGATVHWQQNRPITIMEARRT 877

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            QG+ D     GS+  ++R +GN V   +AFALGR +++AV
Sbjct: 878  QGYLDHEPIIGSLSAQYRIVGNGVDRQVAFALGRAIRQAV 917


>gi|342882968|gb|EGU83532.1| hypothetical protein FOXB_05942 [Fusarium oxysporum Fo5176]
          Length = 1335

 Score =  123 bits (308), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 179/450 (39%), Gaps = 62/450 (13%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP---ESLMLINNCNVIL 1177
            L  LD+F G G    GL+  G    +WA +++  A   +  N     E    + + + + 
Sbjct: 799  LRGLDLFCGGGNFGRGLEDGGAIEMRWANDFDANAIHTYMANTAGPSEVSPFLGSIDDLQ 858

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
            R  +E  G+  D V                    P  G VDFI+GG PC GFS +     
Sbjct: 859  RLAIE--GEFSDSV--------------------PPIGDVDFISGGSPCPGFSRLTNDKT 896

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV--SFNKGQ-TFRLTLASLLEMGYQV 1294
            +   +    ++ AF S  D ++PRY LLENV   V  + N+ Q  F   + +++ +GYQ 
Sbjct: 897  TAAQRKNQSLVAAFASCVDLYRPRYGLLENVPGIVQKTANRDQDVFSQLICAIVGLGYQA 956

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE----LKIMLSDNYQYS 1350
             F  L+A A G  Q R R F+  A+P   LP  P   H  A P+    L + +    +  
Sbjct: 957  HFFFLDASACGSPQRRSRVFLAFAAPGHRLPHKPYQTH--AHPQNTSRLSLGILPTGEPM 1014

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH- 1409
            A R+     PF  ++ R +  DLP + +      + Y                    DH 
Sbjct: 1015 AERAMPAATPFDFVSARASTADLPPIYDSKPDICVPY-------------------PDHR 1055

Query: 1410 ISKEMNELNLIRCQKIPKRP-----GADWH--DLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
            +S  +  L   R   IP +P        W+  DL      + T       P        R
Sbjct: 1056 VSVGITPLMRSRIHLIPTQPWGMNYAQAWYGRDLKKAGSGVMTPSERLAFPERTDQGLGR 1115

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQP-MGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
             N     +GR   +  F T +    P   K G   H  + R LT+ E  R+QGF D    
Sbjct: 1116 ANPNSNAYGRQRPDHLFVTIVKTQSPDDAKNGRTLHWREPRALTIMEARRAQGFRDDEVL 1175

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             G    +++ +GN+V   +A +LG    EA
Sbjct: 1176 LGIPSDQYKIVGNSVAREVAVSLGAVFCEA 1205


>gi|336406404|ref|ZP_08587059.1| hypothetical protein HMPREF0127_04372 [Bacteroides sp. 1_1_30]
 gi|335934608|gb|EGM96593.1| hypothetical protein HMPREF0127_04372 [Bacteroides sp. 1_1_30]
          Length = 419

 Score =  123 bits (308), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 193/449 (42%), Gaps = 65/449 (14%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP-ESLMLINNCNVILRAVME 1182
            +D+FAG GGLSEG  ++G +     IE  + A +  +       L   N     ++ + E
Sbjct: 8    IDLFAGAGGLSEGFIRAGFTPIA-HIEMNKYACDTLRSRMAYHYLKQHNRLEEYIKYLKE 66

Query: 1183 KC-GDAEDCVSTSEAAELAASL------DENV------INNLPLPGQVDFINGGPPCQGF 1229
            K  G++   +      E+  S+      DE +      ++ L    QVDFI GGPPCQ +
Sbjct: 67   KQEGESGQKLWEKVPDEVIDSVINKEISDETLADIFIKVDKLKGNKQVDFIIGGPPCQAY 126

Query: 1230 SGMNRFNQSTWSKVQCEMILA--FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            S + R       K      L   +L F   ++P+ F+ ENV   +S   G      L  +
Sbjct: 127  SIVGRARDPKNMKKDPRNFLYKYYLQFLKRYEPKMFVFENVPGILSAQNGIHLENILKGI 186

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             + GY++    L+A  +GV Q+R+R  I           W + +              N 
Sbjct: 187  DKAGYKIELKKLKASDYGVLQNRERVIIVG---------WRKEL--------------NL 223

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLP--AVGNGASKTIMEYQNDPVSWFQK-RIRGNMA 1404
            +Y  +    N  P++ +   D   DLP    G G+   I++Y      + Q+ ++R ++ 
Sbjct: 224  KYPELEKEEN--PYKILP--DLFSDLPERQQGEGSLTDIVQYVAPATGYLQQSKVRNSLD 279

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
              T HI++  N ++L    +I KR    W    ++K +L+           LP   ++HN
Sbjct: 280  FTTQHIARPHNLIDL----EIYKRAIKLW---LEKKARLNYAD--------LPPELQKHN 324

Query: 1465 QWKGLFGR---LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
              +    R   ++ EG   T +      G   +     Q R +TVRE AR Q FPD Y F
Sbjct: 325  NKQAFLNRFQVVNHEGCCHTVVAHIAMDGHYYIYPSLKQIRSITVREAARIQSFPDDYYF 384

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
             GS     +QIGNAVP  LA  +  K+KE
Sbjct: 385  EGSRTAAFKQIGNAVPVILAEKIANKIKE 413


>gi|420459983|ref|ZP_14958782.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-27]
 gi|393077085|gb|EJB77834.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-27]
          Length = 348

 Score =  123 bits (308), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 179/422 (42%), Gaps = 87/422 (20%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            DIF G GGLS G          WA + ++ A  +++ NH E+  ++  C++         
Sbjct: 6    DIFCGAGGLSYGFSAHPHFELIWANDIDKDAILSYQANHKEAKTIL--CDI--------- 54

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQ 1244
                        A+L         +NLP    +D + GGPPCQ +S + +         +
Sbjct: 55   ------------AQLHC-------HNLPCVS-IDILLGGPPCQSYSTLGKRKMDE----K 90

Query: 1245 CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAF 1304
              +   +L      +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  +
Sbjct: 91   ANLFKEYLRLLYLVKPKIFVFENVVGLMSMQKGQLFKQICNAFKERDYILEHAILNALDY 150

Query: 1305 GVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM 1364
            GV Q R+R  +       TL  + +  + F  P +K   S                    
Sbjct: 151  GVPQIRERVILVG-----TLKRFKQKFY-FPKP-IKTHFS-------------------- 183

Query: 1365 TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK 1424
             ++D +GDLP + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +
Sbjct: 184  -LKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQ 240

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
              K  G    DLP E ++  +G +         NT          + ++ WE   PT IT
Sbjct: 241  TLKD-GQSKDDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-IT 278

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                      C HP   R L++ E AR Q FPD Y+F GS   K  QIGNAVPP L+ AL
Sbjct: 279  RNFSTPSSSRCIHPRDSRALSIIEGARLQSFPDDYKFCGSASAKRLQIGNAVPPLLSVAL 338

Query: 1545 GR 1546
             +
Sbjct: 339  AQ 340


>gi|386284382|ref|ZP_10061604.1| modification methylase HaeIII [Sulfurovum sp. AR]
 gi|385344667|gb|EIF51381.1| modification methylase HaeIII [Sulfurovum sp. AR]
          Length = 409

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 194/460 (42%), Gaps = 81/460 (17%)

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            E+   +S E  L  +D+FAG GG +EG  Q G  +    IE+++ A              
Sbjct: 10   EENKKSSNEKPLTFIDLFAGAGGFAEGFYQEGYKALSH-IEFDKYA-------------- 54

Query: 1170 INNCNVILRAVMEKCG-DAED------CVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
               C+  LR  M+  G D ED      C   + + ++   +D++V  N      VD I G
Sbjct: 55   ---CDT-LRHRMKHYGYDEEDIKHGVLCEDIT-SKDIIEKMDKSVKGN-----DVDIIIG 104

Query: 1223 GPPCQGFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN-KGQT 1279
            GPPCQ FS  G  R   S     +  +  ++L   ++++P++F+ ENV   +S    G+ 
Sbjct: 105  GPPCQSFSSQGKARDPHSMKCDPRNYLYESYLKILNHYRPKFFVFENVTGLLSTEINGKK 164

Query: 1280 FRLTLASLLEMGYQV----RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA 1335
               T+   ++  Y +       +L +  FG+ Q RKR  I                    
Sbjct: 165  IIETIMKDMKKNYNIVEEKSEIVLNSSDFGIPQERKRVIIIGVRK--------------- 209

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                 I +     Y  +   +   P   +TV+D + DLP +  G  +  +++  +  + +
Sbjct: 210  ----DIDIHPKAIYEDLAEISKNEP--KVTVQDALADLPKLKAGQGEDCIDFIPEKTNEY 263

Query: 1396 QKRIRG-NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
             K+IR  N   L  H+++  N+L+  R + + K    +W          + G++ D  P 
Sbjct: 264  LKKIRSENYEKLHHHVARTHNDLDKKRYKLMSKN---NW----------TLGELYDKKPE 310

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPD--QDRILTVRECARS 1512
             L +  KR      +  R D     P+               HPD  Q+R  T RE AR 
Sbjct: 311  -LKHPKKRLFNNSYVVQRFD----MPSKTIIAHLYKDGNQFIHPDHTQERTFTPREAARC 365

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Q FPD + F  S   +++QIGNAVPP LA  +   LK+ +
Sbjct: 366  QSFPDDFVFPCSKTQQYKQIGNAVPPLLAKTIASVLKKYL 405


>gi|318042684|ref|ZP_07974640.1| DNA-cytosine methyltransferase [Synechococcus sp. CB0101]
          Length = 361

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 185/439 (42%), Gaps = 98/439 (22%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            HL  ++ F+G GG+S GL+++G     +A + + P+     LN      L   C  +   
Sbjct: 3    HLTCIESFSGPGGMSLGLERAGFQ-LLYAFDNDAPSVVTHNLN------LNGKCFQL--- 52

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                  DA    S    A+   S+           G +D  +GGPPCQGFS   R   + 
Sbjct: 53   ------DARQVDSVELLAQCGLSV-----------GDLDLFSGGPPCQGFSKQRR--GAH 93

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  ++L +L      +P+ FL ENV  F    +G  F   +   L   Y++     
Sbjct: 94   LGDDRNLLVLEYLRLVQELKPKSFLFENVAIFGQ-KRGLAFLAAMKEALS-AYRLYPNFF 151

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             +  FG++Q+R R  +                       + I     +++ +   T    
Sbjct: 152  NSADFGLAQTRHRFML-----------------------VGIRRDIGFRFLSPPPTVQ-- 186

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
              +  TVRD IGD+P   +  S    E+ +                  +H   ++ + N+
Sbjct: 187  --KWATVRDVIGDMPPPPSDCS----EHPD----------------FFNHAQTKITKRNI 224

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             R   +P+  G  W D+P + ++L   +  D+          +   W  ++GRL W+G  
Sbjct: 225  ERFSYVPQ--GGGWQDIPWD-LRLDCHKTADI----------KSGGWPDVYGRLSWDGQC 271

Query: 1480 PTSIT---DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
            PT IT   D    G+ G   HP+Q+R LT RE AR QGFPD++   G+      QIGN V
Sbjct: 272  PT-ITGGFDSFTRGRYG---HPEQNRALTPREAARLQGFPDNFILTGNRHQVRHQIGNVV 327

Query: 1537 PPTLAFALGRKLKEAVESK 1555
            PP LA A+G+++ + +  K
Sbjct: 328  PPPLAEAVGKQIADCLNGK 346


>gi|302415627|ref|XP_003005645.1| DNA methyltransferase Dim-2 [Verticillium albo-atrum VaMs.102]
 gi|261355061|gb|EEY17489.1| DNA methyltransferase Dim-2 [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 149/608 (24%), Positives = 235/608 (38%), Gaps = 130/608 (21%)

Query: 957  GETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDI 1016
            GET  A  +   K    C+L  +  P++P        ++++R+  R   I  +    +  
Sbjct: 651  GETVLALLDPSGKRLEPCEL--VTAPRKP------GVKIQLRKLLR--RIEVDPYSQARP 700

Query: 1017 REVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP----AIFQHIFFCEHLHDPSKGSLK 1072
             E+ YS+E + + + A+ G+C VR      A   P     +    +   +L +       
Sbjct: 701  NELVYSDEMYSVLLAAVYGRCLVRYYGPGEAVQTPYDRDGVGNAFYISTYLQN------- 753

Query: 1073 QLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQE--NHLATLDIFAGC 1130
                      +SG+   E  SR +           +  +QG    E    L   D+F G 
Sbjct: 754  ----------TSGTKTCEPFSRERPFP--------KTFRQGMDPSEGFTKLEGFDLFCGG 795

Query: 1131 GGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190
            G    GL++SG    +WA                      N+ N  +RAV     + +D 
Sbjct: 796  GNFGRGLEESGAIEMRWA----------------------NDIN--MRAVHTYMANLDD- 830

Query: 1191 VSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILA 1250
               S  +  A S+D+     L  P Q                 R NQS        ++ A
Sbjct: 831  --PSRVSPFAGSIDD-----LTTPNQ-----------------RKNQS--------LVAA 858

Query: 1251 FLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGILEAGAFGVS 1307
            F SF D ++P+Y LLENV   +   K +    F   + +++ MGYQ  F +L+A  FG  
Sbjct: 859  FASFIDIYRPKYGLLENVVEMIQGRKTREEDVFCQLICAIVGMGYQTHFFLLDAWTFGSP 918

Query: 1308 QSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVR 1367
            QSR R F   A+P   LPE P   H+  A   + +   +     +R T     F ++T R
Sbjct: 919  QSRSRIFFAFAAPGLRLPEVPMQSHLPLAMRSRSLGLLSNGEPMLRKTFMPTAFASVTAR 978

Query: 1368 DTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQK--I 1425
              + DLP + +  +   + +                    DH  + +    L+R Q   +
Sbjct: 979  QALTDLPDIADAKADCCIPF-------------------PDH-RQSIGVTRLLRPQLSCM 1018

Query: 1426 PKRP-GADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            P RP G +     ++     T   + L P      AKR       FGRL  +    T  T
Sbjct: 1019 PTRPWGLNLSTAYNKGHGPITAAEMSLYP-----QAKRQGPSSKAFGRLHPDKLMGTITT 1073

Query: 1485 DPQPMGKVG-MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
             P P    G    H +Q+RILTV E  R+QGF D     G+   + + +GN+V   ++ A
Sbjct: 1074 TPSPSDGYGRAVLHWEQNRILTVMEARRAQGFRDHEVILGTPAEQWKTVGNSVAREVSIA 1133

Query: 1544 LGRKLKEA 1551
            LG   + A
Sbjct: 1134 LGLSFRAA 1141


>gi|428308044|ref|YP_007144869.1| DNA-cytosine methyltransferase [Crinalium epipsammum PCC 9333]
 gi|428249579|gb|AFZ15359.1| DNA-cytosine methyltransferase [Crinalium epipsammum PCC 9333]
          Length = 395

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 177/438 (40%), Gaps = 92/438 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D F+G GG S G + +G+     A ++ E A    K N  E++             
Sbjct: 3    LTYIDFFSGAGGWSCGFKMAGLKHIG-AYDFNESACRTAKYNISENV------------- 48

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
              KC D               + D   I    L G VD + G PPCQGFS     N+   
Sbjct: 49   --KCVDLN-------------TFDVRTI----LDGNVDIVVGSPPCQGFSNEGYKNE--- 86

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM--GYQVRFGI 1298
               +  ++  F  F +   P+ ++ ENV  F +  KG  F+  L   LE+   YQ  + I
Sbjct: 87   KDPRNSLVWKFFDFIEILTPKVWIFENVPGFKTSYKGIYFK-QLQQRLELMPAYQWNYFI 145

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L +  +GV Q R R F   A      P+ PE  H     +L  +L  +            
Sbjct: 146  LNSSDYGVPQKRSRFFAIGAKKFQ--PQRPEATH----SKLGEVLGTD------------ 187

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
               +A+++ ++I DLP +G G  K I EY       +QK  R    ++ +H S+  ++  
Sbjct: 188  ---KAISLWESISDLPKIGIGEKKGIFEYDKPAECEYQKWARLGSNIIKNHTSQNHSQRV 244

Query: 1419 LIRCQKIPKRPGAD--WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            L + + +P   G +   +   + KV    G              K    +   + R    
Sbjct: 245  LEKIKSVPMGSGMEVFVNKYQENKVVYCGG---------YRRAVKDEPSYTAYWTR---- 291

Query: 1477 GNFPTSITDPQPMGKVGMC-FHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
                            GM   HP++ R L+ RECAR Q FPDS+ F G+    + QI NA
Sbjct: 292  ----------------GMTSIHPEEHRFLSPRECARIQSFPDSFIFQGTTIENYTQICNA 335

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            VPP +A +  R L + ++
Sbjct: 336  VPPLVARSFARSLLKVLK 353


>gi|209523295|ref|ZP_03271851.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209496446|gb|EDZ96745.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 387

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 173/425 (40%), Gaps = 85/425 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG+S GL+ +G       +++++ A + F+ NHP++  +              
Sbjct: 11   IDLFSGAGGMSCGLEMAGFECL-LGVDFDKSAIQTFQNNHPQAETI-------------- 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD  + +ST +  EL                 ++ I GGPPCQGFS +   N       
Sbjct: 56   CGDLRE-ISTEQIRELIGDR------------HINLICGGPPCQGFSTIGSNNNLDKRNF 102

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
               + L FL F +  +P Y ++ENV   +S     T    L  L  +GY V   +L A  
Sbjct: 103  ---LFLEFLRFVEQLKPDYIIIENVTGLLSRKNENTLTSILTCLQNIGYTVDVRVLSAHH 159

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV + R+R                   + F  P L         Y + +   N      
Sbjct: 160  YGVPEKRRRTIFLG--------------NRFGVPNL---------YPSPQFQDNEPDLDF 196

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            +    T+G        A +  +EYQ             N  + T  I    N L   R Q
Sbjct: 197  LPAAKTVG-------FAWENWLEYQGKTY---------NHDLSTAQIP---NHLERQRIQ 237

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             IP+  G  +   PD++  L      D+    L  +  R  + K L  R  +     TS 
Sbjct: 238  HIPEGKGVRYQ--PDQQAYLPPELWYDIDWEKLRESRFRETKLKRL-ARDSYSPTINTSR 294

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            T           +HP ++R LT RE A  Q FP ++ F+G++  + RQIGNAVPP LA A
Sbjct: 295  T---------TYYHPTENRYLTPREAAAIQSFPPNFIFYGTVTQQWRQIGNAVPPLLAKA 345

Query: 1544 LGRKL 1548
            LG  +
Sbjct: 346  LGEAI 350


>gi|420399493|ref|ZP_14898698.1| cytosine-specific methyltransferase [Helicobacter pylori CPY3281]
 gi|393019642|gb|EJB20783.1| cytosine-specific methyltransferase [Helicobacter pylori CPY3281]
          Length = 281

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 142/330 (43%), Gaps = 55/330 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPCQGFS  N+         +  + L ++      +P  F+++NV+N +S  KG 
Sbjct: 1    MIIGGPPCQGFS--NKGKNLGLKDSRNFLFLEYIEIVKALKPEIFIIKNVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLSWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            Y F+G+     +QIGNAVPP LA ALG+ +
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAI 275


>gi|217034606|ref|ZP_03440014.1| hypothetical protein HP9810_903g31 [Helicobacter pylori 98-10]
 gi|216942961|gb|EEC22446.1| hypothetical protein HP9810_903g31 [Helicobacter pylori 98-10]
          Length = 281

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 55/334 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GG PCQGFS  N+         +  + L ++      +P+ F++ENV+N +S  KG 
Sbjct: 1    MIIGGSPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPKIFIIENVKNLISCAKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKKRLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLSWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFSDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|433603053|ref|YP_007035422.1| DNA-cytosine methyltransferase [Saccharothrix espanaensis DSM 44229]
 gi|407880906|emb|CCH28549.1| DNA-cytosine methyltransferase [Saccharothrix espanaensis DSM 44229]
          Length = 365

 Score =  123 bits (308), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 178/443 (40%), Gaps = 110/443 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L+ +D+FAGCGG++ G   +G      A+E++  A   +  N  E  M            
Sbjct: 2    LSMIDLFAGCGGMTAGFASAGGYRPVMAVEWDLRAAATYAANFGEDHM------------ 49

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGM-----NRF 1235
                            +++AA  DE++        +VD I GGPPCQGFS +     N  
Sbjct: 50   --------------RWSDIAAIPDESI-------PEVDLIVGGPPCQGFSNLGSRDVNDP 88

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
              S W +        +L F    +P+ F++ENV  F+S     +    L      GY++ 
Sbjct: 89   RNSLWRE--------YLRFVRTARPKVFVIENVDRFLS-----STEFALLQAETEGYELS 135

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
             GIL A  FGV Q R+RA +   S    +P  P P H   +                   
Sbjct: 136  SGILLAADFGVPQRRRRAIV-IGSRIGPIP-LPAPTHPRGSWH----------------- 176

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                     TVRD +  LP +      T     +  V +F + + G       HI +   
Sbjct: 177  ---------TVRDVLTGLPEL-----PTTTALPDSTVEFFGQTMPGRHKSPDLHIGRNPT 222

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
             L++ R + +P  PG    DLPDE           L+P C     ++      + GR+ W
Sbjct: 223  PLSVQRYRHVP--PGGGRFDLPDE-----------LLPRCW---REKKTGTTDVMGRMRW 266

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQ---------DRILTVRECARSQGFPDSYQFHGSIQ 1526
            +    T  T+     K G   HP           DR +T  E AR Q FPD +++ G+  
Sbjct: 267  DEPSLTIRTEFYKPEK-GQYLHPQWEPGEDGHRVDRPITHLEAARLQSFPDDFEWCGTKI 325

Query: 1527 HKHRQIGNAVPPTLAFALGRKLK 1549
               RQIGNAVPP+LA A+   L+
Sbjct: 326  EVARQIGNAVPPSLARAIATHLE 348


>gi|422316149|ref|ZP_16397550.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum D10]
 gi|404591451|gb|EKA93595.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium periodonticum D10]
          Length = 361

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 189/451 (41%), Gaps = 105/451 (23%)

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            E  L+V+K+   + E  L  +++FAG GGL+ G++++G ++    IE ++ A    KLN 
Sbjct: 13   EKNLKVDKKK-VNSEVELKAIELFAGAGGLALGVEKAGFNTIG-LIEIDKNACNTLKLNR 70

Query: 1164 PESLMLINNCNVILRAVME-KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            P       N NVI   +      + ED  S  +                   G++D ++G
Sbjct: 71   P-------NWNVINENIANISLKNLEDFFSIKK-------------------GELDLLSG 104

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            G PCQ FS   +  +      +  +   +  F    QP+ FL ENV+  +S +KG+T   
Sbjct: 105  GAPCQAFSYAGK--RLGLEDTRGTLFYHYALFLKQLQPKMFLFENVKGLLSHDKGKTHET 162

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             +    E GY +   +L A  +GV+Q R+R  I     +D +             +L  +
Sbjct: 163  IVNVFKEEGYTIYEKVLNAWNYGVAQKRERLII-VGIRNDLI------------NKLNFL 209

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
                ++Y  V             +RD + D P           E +    S ++K+I   
Sbjct: 210  FPTPHKYKPV-------------LRDILLDCP-----------ESKGIAYSEYKKKI--- 242

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
                                + +P  PG  W D+P E  K       + +  C      R
Sbjct: 243  -------------------FEMVP--PGGYWKDIPKEIAK-------EYMKSCWDMEGGR 274

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
                 G+  RL  +    T +T P    +   C HP + R  T+RE AR Q FPD + F 
Sbjct: 275  ----TGILRRLSLDEPSLTVLTSPS-QKQTDRC-HPIEPRPFTIRENARCQSFPDEWIFS 328

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            GS+  ++RQ+GNAVP  LA+ +  ++++A+E
Sbjct: 329  GSVTDQYRQVGNAVPVNLAYEVALEIRKALE 359


>gi|340754196|ref|ZP_08690959.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
 gi|229423724|gb|EEO38771.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
          Length = 361

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 189/451 (41%), Gaps = 105/451 (23%)

Query: 1104 EDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163
            E  L+V+K+   + E  L  +++FAG GGL+ G++++G ++    IE ++ A    KLN 
Sbjct: 13   EKNLKVDKKK-VNSEVELKAIELFAGAGGLALGVEKAGFNTIG-LIEIDKNACNTLKLNR 70

Query: 1164 PESLMLINNCNVILRAVME-KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFING 1222
            P       N NVI   +      + ED  S  +                   G++D ++G
Sbjct: 71   P-------NWNVINENIANISLKNLEDFFSIKK-------------------GELDLLSG 104

Query: 1223 GPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282
            G PCQ FS   +  +      +  +   +  F    QP+ FL ENV+  +S +KG+T   
Sbjct: 105  GAPCQAFSYAGK--RLGLEDTRGTLFYHYALFLKQLQPKMFLFENVKGLLSHDKGKTHET 162

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             +    E GY +   +L A  +GV+Q R+R  I     +D +             +L  +
Sbjct: 163  IVNVFKEEGYTIYEKVLNAWNYGVAQKRERLII-VGIRNDLI------------NKLNFL 209

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
                ++Y  V             +RD + D P           E +    S ++K+I   
Sbjct: 210  FPTPHKYKPV-------------LRDILLDCP-----------ESKGIAYSEYKKKI--- 242

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
                                + +P  PG  W D+P E  K       + +  C      R
Sbjct: 243  -------------------FEMVP--PGGYWKDIPKEIAK-------EYMKSCWDMEGGR 274

Query: 1463 HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
                 G+  RL  +    T +T P    +   C HP + R  T+RE AR Q FPD + F 
Sbjct: 275  ----TGILRRLSLDEPSLTVLTSPS-QKQTDRC-HPIEARPFTIRENARCQSFPDEWIFS 328

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            GS+  ++RQ+GNAVP  LA+ +  ++++A+E
Sbjct: 329  GSVTDQYRQVGNAVPVNLAYEVALEIRKALE 359


>gi|378732261|gb|EHY58720.1| DNA (cytosine-5-)-methyltransferase [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1254

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 181/438 (41%), Gaps = 77/438 (17%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L +F+GCG        +G S   +A E  E A  ++K N        N  +V     
Sbjct: 628  LRGLSLFSGCGLFDAAFTCNGNSEIVYATEICEIAARSYKANDA-----TNRTHV----- 677

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
              + G  ED              ++  +   P+P  +DFI GG PC  +S +N F  +  
Sbjct: 678  --EIGSVED------------GFEDFALGRKPMP-DIDFIIGGFPCPFYSTLNHFKHTRR 722

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S+    ++   LS+ + F P Y L+ENV N     +    R  +  L+ +GYQVR  +  
Sbjct: 723  SQKDGSLVANMLSWIEIFMPPYVLMENVPNMDRI-RPNACRQAICHLVALGYQVRKSVHN 781

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
                G    R+R FI AA+P   LP+                L D +          G  
Sbjct: 782  DANLGGVSIRQRLFIVAAAPGVMLPD---------------KLVDTH----------GTG 816

Query: 1361 FRAM-TVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
             R + TV + +GDL  + N     I++  + P           M+ L    ++ ++  +L
Sbjct: 817  LRKIRTVSEAMGDLSPIDNDTDINILDPSHVP-----------MSRLGLDFARNVSYRSL 865

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVD---LIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            +R  +IP  P      +   +   + G +         CL N  K+    K L  R+D +
Sbjct: 866  VR--QIPTEPKC----MSLSRTYYAGGLLAHQRRFFEQCL-NPVKQARNSKCL-QRIDPD 917

Query: 1477 GNFPTSITDPQPMGK--VGMCFHPDQDRILTVRECA-RSQGFPDSYQFHGSIQHKHRQIG 1533
              F T  T   PM     G   HP QDR L+++E   R+ G PD Y   GS++ +++Q G
Sbjct: 918  KPFRTVCTVIAPMDARFCGHIIHPSQDRTLSLKEGGRRAMGMPDYYLLAGSVEEQYKQCG 977

Query: 1534 NAVPPTLAFALGRKLKEA 1551
            NAVP T+  A GR    A
Sbjct: 978  NAVPWTMGAAWGRNFARA 995


>gi|420427151|ref|ZP_14926196.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-9]
 gi|393042084|gb|EJB43095.1| cytosine-specific methyltransferase [Helicobacter pylori Hp A-9]
          Length = 335

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 159/353 (45%), Gaps = 59/353 (16%)

Query: 1195 EAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS 1253
            EA  +   + +   +NLP +P  +D + GGPPCQ +S + +         +  +   +L 
Sbjct: 33   EAQTILCDIMQLHCHNLPCVP--IDILLGGPPCQSYSTLGKRKMDE----KANLFKEYLR 86

Query: 1254 FADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
              D  +P+ F+ ENV   +S  KGQ F+    +  E  Y +   IL A  +GV Q R+R 
Sbjct: 87   LLDLVKPKIFVFENVVGLMSMQKGQLFQQICNAFKERDYILEHAILNALDYGVPQIRERV 146

Query: 1314 FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDL 1373
             +  A                    LK      Y    +++          +++D +GDL
Sbjct: 147  ILVGA--------------------LKSFKQKFYFPKPIKTH--------FSLKDALGDL 178

Query: 1374 PAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADW 1433
            P + +G +   + Y  +  + F + +R N   L++H S + NE  LI+  +  K  G + 
Sbjct: 179  PPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQTLKD-GQNK 235

Query: 1434 HDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG 1493
             DLP E ++  +G +         NT          + ++ WE   PT IT         
Sbjct: 236  DDLP-ESLRPKSGYI---------NT----------YAKMWWEKPAPT-ITRNFSTPSSS 274

Query: 1494 MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGR 1546
             C HP   R L++RE AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL +
Sbjct: 275  RCIHPRDSRALSIREGARLQSFPDNYKFYGSASAKRLQIGNAVPPLLSVALAQ 327


>gi|307106990|gb|EFN55234.1| hypothetical protein CHLNCDRAFT_52630 [Chlorella variabilis]
          Length = 1211

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 2/124 (1%)

Query: 1211 LPLPGQVDFINGGPPCQGFSGMNR--FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
            +P PG+VDFI GGPPCQG SG NR    +      +   +  F++++++F+P+Y L+ENV
Sbjct: 537  IPFPGEVDFICGGPPCQGISGNNRHAMTEDILQDPRNRQLPVFIAYSEWFKPKYVLMENV 596

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
            ++ +    G   +  + S+L M YQVR G+L AG FGV Q R R F+WAA+P   LP  P
Sbjct: 597  QDILKKEDGLYIKYAMGSMLNMRYQVRVGLLAAGNFGVPQGRWRCFLWAAAPGQQLPAIP 656

Query: 1329 EPMH 1332
            +P H
Sbjct: 657  KPTH 660


>gi|91203606|emb|CAJ71259.1| similar to HhaI Dna (cytosine-C5-)-methyltransferase [Candidatus
            Kuenenia stuttgartiensis]
          Length = 416

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 193/451 (42%), Gaps = 79/451 (17%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+FAG GG SEG +++G     + +E +  A    K  H    +  NN + I    
Sbjct: 1    MRYIDLFAGAGGFSEGFKRAGFEPVAF-VEVDPAACFTLKTRHSYHYLKENNKSDIYIKY 59

Query: 1181 MEKCGDAEDCVSTSEAAELAASL-----DEN------VINNLPLPGQVDFINGGPPCQGF 1229
            ++   + E   S   +  L + +     DEN      ++  L     +D I GGPPCQ +
Sbjct: 60   LKGEINREQLYSIVPSHILESVINLSISDENNSKIFQIVEKLIGRKDIDVIVGGPPCQAY 119

Query: 1230 S--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
            S  G  R         +  + + +  F   + P+ F+ ENV   +S  KG+ F+      
Sbjct: 120  SLVGRARDRNGMRDDPRNYLYIQYGKFLKKYSPKLFVFENVTGLLSAEKGKHFKNIQDDY 179

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             ++GY V    +EA  FGV Q+RKR  I           W + ++ F+   +K   S+ Y
Sbjct: 180  RKLGYVVEHVKVEAKEFGVLQNRKRVIIIG---------WKKDLN-FSFGRIKEQSSEEY 229

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASK----TIMEYQNDPVSWFQKRIRGNM 1403
            +                 V     DLP +  G  K      ++  ND + +   +IR   
Sbjct: 230  E-----------------VGKIFKDLPKLSAGEGKDKYCNYVDGINDYLRF--AKIRNGF 270

Query: 1404 AVLTDHISK----EMNELNLIRCQKIPK-RPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
             VLT HI++    +  E+  I  +K  + +   D++DLP E++K                
Sbjct: 271  DVLTQHITRPHTEQDKEIYRIAVEKWKRSKERLDYNDLP-ERLK---------------- 313

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGF 1515
            T K  N +   F  +    N+  ++     + K G  + HPD  Q+R ++VRE AR Q F
Sbjct: 314  THKNRNAFLDRFKVVVDNVNYSQTVV--AHIAKDGHYYIHPDIEQNRSISVREAARLQSF 371

Query: 1516 PDSYQFHGSIQHKHR-----QIGNAVPPTLA 1541
            PD Y F G  + K R     QIGNAVPP +A
Sbjct: 372  PDDYYFEGVKEGKSRTAAFKQIGNAVPPLMA 402


>gi|261415336|ref|YP_003249019.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|385790267|ref|YP_005821390.1| cytosine specific DNA methyltransferase [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|261371792|gb|ACX74537.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|302326638|gb|ADL25839.1| cytosine specific DNA methyltransferase [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 418

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 184/459 (40%), Gaps = 122/459 (26%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  L  F+G  GL  GL ++GI     A E E  A      N P       N  +I    
Sbjct: 21   IVALSFFSGAMGLDIGLSKAGIK-VLLASEIEPNARRTILTNEP-------NIGLI---- 68

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD  D      +AE     D     NLP   ++D + GGPPCQ FS   +  + ++
Sbjct: 69   ----GDISDY-----SAE-----DIRKYANLPKNQEIDVMVGGPPCQAFSTAGK--RESF 112

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVS--FN-----------------KGQTFR 1281
            S  +  + L ++      +P+Y ++ENVR  +S  +N                 KG    
Sbjct: 113  SDARGNVFLTYIDRILELRPKYAVIENVRGLLSAAYNPPKKESFGFAMPTPKNEKGGALA 172

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH----VFAAP 1337
              +  L + GY V F +  A  +G  Q R+R  I  +      P +  P H    +F  P
Sbjct: 173  YIIKKLEDGGYGVSFNLYNAANYGAPQKRERIVIICSRDGSKAP-YLTPTHSETGLFNLP 231

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK 1397
            + +                        TV + + DL        + + EY      + +K
Sbjct: 232  KWR------------------------TVSEVLNDL-------DENVQEYSK----FSEK 256

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
            R++                    R  K     G  W DLP+E  K + G  + L      
Sbjct: 257  RLK------------------FFRMLKA----GQYWKDLPEEAQKEAMGSKLQL------ 288

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPD 1517
                      G F RL W+   PT +TDP  M    +C HPD+DR L+V+E  R Q FPD
Sbjct: 289  -----GGGKTGFFRRLAWDLPSPTLVTDPT-MPATDLC-HPDKDRPLSVQEYKRIQEFPD 341

Query: 1518 SYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
             ++  G I+ K++Q+GNAVP +L  A+G+ + + +E K+
Sbjct: 342  DWKLCGDIKAKYKQVGNAVPVSLGMAIGKHIVKLLEGKK 380


>gi|442321096|ref|YP_007361117.1| DNA-cytosine methyltransferase [Myxococcus stipitatus DSM 14675]
 gi|441488738|gb|AGC45433.1| DNA-cytosine methyltransferase [Myxococcus stipitatus DSM 14675]
          Length = 470

 Score =  122 bits (307), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 121/447 (27%), Positives = 187/447 (41%), Gaps = 82/447 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG+S G +Q+G    + A+E +         N PE       C V+ R+  E 
Sbjct: 7    IDLFAGAGGMSLGFEQAGFD-VRAAVEVDPVHAAVHTFNFPE-------CAVLPRSASE- 57

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                     T+     AA L ++          VD + GGPPCQGFS M    Q      
Sbjct: 58   --------VTAAEIRAAAGLGKS---------PVDCVFGGPPCQGFSLM---GQRALEDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILEA 1301
            +  ++L F+      + R F+ ENV+     N  +     + +  ++GY+ R  + +L+A
Sbjct: 98   RNALVLEFVRLVAELEARTFVFENVKGLTVGNHRRFLDELVRAFDDVGYEARMPWQVLDA 157

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
             ++GV Q R+R  +       TLP +P P    A  E  ++                AP 
Sbjct: 158  ASYGVPQHRERLILLGVRKGGTLPRYPAPTTTPADWERDLV----------------APP 201

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
               T R+ +GDLP     A + +M+   D V+  + R     A     ++ E   L  +R
Sbjct: 202  SGPTCREALGDLPDA--DAFEALMD--GDSVAMPRPRKPSRYAAQLRCLADEDWHLGYMR 257

Query: 1422 CQKIPKRPGADWHD--LPDEKVKLS---------TGQVVDLIPWCLPNTAKRHNQWKGLF 1470
             +  P    + W     P  + + +           +   L P  L NT +         
Sbjct: 258  -RWDPGLLTSSWRTTHTPISRQRFAETAPGSTEPISRFYKLAPEGLSNTLRA-------- 308

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            G     G F    T P+P+       H +  R +TVRE AR  GFPD ++F G+  H  R
Sbjct: 309  GTDGARGAF----TSPRPI-------HYEHARCVTVREMARLHGFPDWFRFQGTKWHGAR 357

Query: 1531 QIGNAVPPTLAFALGRKLKEAVESKRS 1557
            QIGNAVPP LA A+  ++  ++  K S
Sbjct: 358  QIGNAVPPPLARAIASEVVSSLRLKPS 384


>gi|322708438|gb|EFZ00016.1| DNA (cytosine-5)-methyltransferase, putative [Metarhizium anisopliae
            ARSEF 23]
          Length = 1166

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 149/622 (23%), Positives = 233/622 (37%), Gaps = 113/622 (18%)

Query: 957  GETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDI 1016
            G+TF    NV       C+L+ +             T++  R+  +  ++ +  A     
Sbjct: 551  GDTFLIHVNVASSTSEACELISV-------NTRGAGTRLCFRKLLQRSNVDS-TAVTPAR 602

Query: 1017 REVYYSEETHLIFVEAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEHLHDPSK--GSL 1071
             E+ YS E+       I GKC VR      +IPA    A     F+  H   P+     L
Sbjct: 603  NELVYSNESIECDPSGIVGKCHVRFFAHDENIPAPYNRAGVGGYFYVTHRVSPAGLCVPL 662

Query: 1072 KQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCG 1131
            + +P+ ++  +    + SE                              L  LD+F G G
Sbjct: 663  RSVPSSLRQGFDPAVVISE------------------------------LRGLDLFCGGG 692

Query: 1132 GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCV 1191
                GL++ G     WA                      N+CN   RA+     +   C 
Sbjct: 693  NFGRGLEEGGAVRMSWA----------------------NDCNA--RAIHTYMAN---CS 725

Query: 1192 STSEAAELAASLDE--------NVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
              +  +    S+D+        N   ++P  G VDFI+GG PC GFS +     +   + 
Sbjct: 726  HPNLMSPFLGSIDDFQREAFSGNFSKSVPTIGSVDFISGGSPCPGFSTLTNDRTTDEQRK 785

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFV--SFNKGQ-TFRLTLASLLEMGYQVRFGILE 1300
               ++ AF S  D ++P+Y LLENV   +    N+ Q      + +++ +GYQ +   L+
Sbjct: 786  NQSLVAAFASCVDLYRPKYGLLENVPGILPSKANREQDVLGQFMCAIVGIGYQAQVFYLD 845

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM----LSDNYQYSAVRSTA 1356
            A + G +Q R R FI  A+P+  LP  P+  H    P+ +      L       A R   
Sbjct: 846  ASSCGSAQRRSRVFISFAAPNYKLPGKPQQTHSH-PPDTRYTSLGKLPTRRHVLAERDFL 904

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
               PF     R     LP + NG + T + + +       +  RG    L   IS     
Sbjct: 905  RATPFSYSVARQVSSGLPKIHNGQTDTCIAFPD------HRLARGLTKGLKARIS----- 953

Query: 1417 LNLIRCQKIPKRP-GADWHD------LPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
                    IP RP G +          P E+    T       P   P+   R +   G 
Sbjct: 954  -------LIPNRPWGMNLRSASRGILTPAERGVFVTINRKTSKPNTEPHKLDRQSSAYGR 1006

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
                   G   T+I  P    K G   H  ++R L+V E  R+QGF D     G+   ++
Sbjct: 1007 LCPNQLIGAI-TTIQVPNDR-KHGRQLHWHENRGLSVMEARRAQGFLDDEVILGTPAEQY 1064

Query: 1530 RQIGNAVPPTLAFALGRKLKEA 1551
            + +GN+V   +A ALG  ++EA
Sbjct: 1065 KIVGNSVAREVALALGLSIREA 1086


>gi|420406011|ref|ZP_14905184.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6271]
 gi|393021830|gb|EJB22960.1| cytosine-specific methyltransferase [Helicobacter pylori CPY6271]
          Length = 281

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 55/334 (16%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GG PCQGFS  N+         +  + L ++      +P  F++ENV+N +S  KG 
Sbjct: 1    MIIGGSPCQGFS--NKGKNLGLKDPRNFLFLEYIEIVKALKPEIFIIENVKNLISCTKGY 58

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
                    L  +GYQ+ + IL A  +GV Q+R+RAFI  AS                   
Sbjct: 59   FLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASRFS---------------- 102

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR 1398
                    + ++ +       P +++ V+D I DL  + +       +Y N   S +Q  
Sbjct: 103  --------FDFNLLE------PSQSVNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQAL 148

Query: 1399 IRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN 1458
            +R +   L +H +   ++  L + + I K  G +                      CLP 
Sbjct: 149  MRKDSPKLYNHQATNHSQAALEKLKLINKEQGKE----------------------CLPK 186

Query: 1459 TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDS 1518
                  Q+K  +GRL+W    PT I         G   HP+  R +T RE AR Q F D+
Sbjct: 187  NLHGKQQFKSTWGRLNWNKVSPT-IDTRFDTPSNGTNSHPELHRSITPREAARIQSFRDN 245

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Y F+G+     +QIGNAVPP LA ALG+ + +++
Sbjct: 246  YIFYGNKTSVCKQIGNAVPPLLALALGKAILKSL 279


>gi|423068121|ref|ZP_17056909.1| hypothetical protein HMPREF9682_00130 [Streptococcus intermedius
            F0395]
 gi|355367012|gb|EHG14725.1| hypothetical protein HMPREF9682_00130 [Streptococcus intermedius
            F0395]
          Length = 351

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 161/341 (47%), Gaps = 61/341 (17%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFV 1272
             ++D I GGPPCQ +S + R N  +       + L   +L F D ++P++F+ ENV+  +
Sbjct: 41   NELDGIIGGPPCQAYSTIGRANNKSKKSTDKRIYLYKHYLDFLDKYKPKFFVFENVKGLL 100

Query: 1273 SFNKGQTFRLTLASLL----EMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP 1328
            SF K  +  L L  ++    + GY+V + I++A  +GV Q R+R  +             
Sbjct: 101  SF-KDLSGELLLPKIICEFDKCGYEVDYQIVDASNYGVVQKRERLILVGHR--------- 150

Query: 1329 EPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ 1388
                       K ++ DN  +  +      AP    T+++   DLP++ +G S    +Y+
Sbjct: 151  -----------KDLVFDNSFFDCLAEYVEAAP----TIKELFEDLPSIKSGGSS--HKYR 193

Query: 1389 NDPVSWF-QKRIRGNMAVLTDHISKEMNE--LNLIRCQKIPKRPGAD--WHDLPDEKVKL 1443
             D  S F +K IR    +LT H ++  NE  L + +     K+ G +  + D+P+E   L
Sbjct: 194  CDVSSQFVEKYIRKKDDILTQHAARPHNENDLKIYKLVLRAKKKGKNLRYIDIPEE---L 250

Query: 1444 STGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--Q 1500
             T            NT    +++K L    D+      S T    + K G  + HPD  Q
Sbjct: 251  QTHS----------NTTSFLDRYKAL----DYGS---VSHTVVAHIAKDGHYYIHPDLRQ 293

Query: 1501 DRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
            +R +TVRE AR QGFPD + F  S     +QIGNAVPP L+
Sbjct: 294  NRSITVREAARIQGFPDDFYFEHSRTAAFKQIGNAVPPILS 334


>gi|9622224|gb|AAF89681.1| cytosine-specific methyltransferase [Bacillus sp. LU11]
          Length = 365

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 195/441 (44%), Gaps = 99/441 (22%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
              + +F+G GGL  G + SG +   WAI+ ++ A   +K N  + ++L +     +  + 
Sbjct: 4    TVVSLFSGGGGLDLGFKNSGFNII-WAIDIDKDAVLTYKENLGDHIILGD-----ITKIQ 57

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQST 1239
            EK                          ++P   + D + GGPPCQ FS  G  R +   
Sbjct: 58   EK--------------------------DIP---EADVVIGGPPCQSFSLVGKRRSDDE- 87

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL----EMGYQVR 1295
                + +++  +L   +  +P+ F+ ENV    S    +   L L  L+    E+GY+V+
Sbjct: 88   ----RGQLVWQYLRIINEIRPKCFVFENVVGLKSAKTAEG-NLVLDELIIAFREIGYEVQ 142

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            + +L A  +GV Q RKR FI           +P P H                       
Sbjct: 143  WSVLNAADYGVPQRRKRIFIVGTREGIKF-NFPLPTH--------------------NEK 181

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMA--VLTDHISKE 1413
             N    + ++V + +GDLP+     +  I++Y  +P++ +Q ++R N     +T+H + +
Sbjct: 182  GNDGKLKWISVEEALGDLPSPN---TDGIVKYSTEPLNPYQLKMRENNFDDYVTEHSTPK 238

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
            ++EL+ +  + IP   G ++ D+PD             +P      ++R  ++K   GR 
Sbjct: 239  LSELDKMIIEHIPV--GGNYMDVPD------------FVP------SQRIKKFKETGGRT 278

Query: 1474 DWEGNF----PT-SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH- 1527
               G      P+ +I        VG   H  + R++TVRE  R QGFPD+Y+   S +  
Sbjct: 279  TCYGRLRPDKPSYTINTHFNKPNVGCNIHYKEKRLITVREALRLQGFPDNYKIKSSTKRG 338

Query: 1528 KHRQIGNAVPPTLAFALGRKL 1548
            KH  +GNAVPP L+ A+  K+
Sbjct: 339  KHTIVGNAVPPILSQAIANKV 359


>gi|336322041|ref|YP_004602009.1| DNA-cytosine methyltransferase [[Cellvibrio] gilvus ATCC 13127]
 gi|336105622|gb|AEI13441.1| DNA-cytosine methyltransferase [[Cellvibrio] gilvus ATCC 13127]
          Length = 381

 Score =  122 bits (306), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 174/443 (39%), Gaps = 108/443 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  LD+FAG GGLS G+   G   +  A+E +  A   +KLNHP                
Sbjct: 12   LTVLDLFAGAGGLSAGVTSPGGFRSIAAVEMDRAAAATYKLNHP---------------- 55

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN---- 1236
                             E+ A   +  ++   +P  VD I GGPPCQGFS + + +    
Sbjct: 56   ---------------GTEVFAGPIQEWLDQYDVP-SVDVIVGGPPCQGFSTLGKQDAEDE 99

Query: 1237 -QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS---LLEMGY 1292
              + W +    ++ A        QP++F++ENV +F+   +   FR   +    L +  +
Sbjct: 100  RNALWYEYAKTIVRA--------QPKWFVVENVASFMKSEQFALFRRATSPGGMLEDWSF 151

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
              R  ++ A  +G  Q+RKRA +         P WP P HV                   
Sbjct: 152  SAR--VVNAADYGSFQARKRAILIGHREDVPAPGWPAPTHVG------------------ 191

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                     R  TV + I  LP            +    V+     + G +A     I +
Sbjct: 192  ---------RHRTVAEAIRGLPEPETDV------WPTRTVTVNGDTMPGGLATDELQIGR 236

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-LFG 1471
               +L+L R   IP   G +  DLPD           DL   C     ++H    G + G
Sbjct: 237  HYRQLSLERFAVIPY--GGNRFDLPD-----------DLKAPCW----RKHTSGSGDVMG 279

Query: 1472 RLDWEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            RL W+       T    P+     G   HP+  R++T RE A  QGFP  Y + G+ +  
Sbjct: 280  RLHWDRPSVTIRTEFFKPEK----GRYLHPESHRVITHREAAILQGFPGDYVWAGTREQV 335

Query: 1529 HRQIGNAVPPTLAFALGRKLKEA 1551
             RQIGNAVP  L  A+GR +  A
Sbjct: 336  ARQIGNAVPLELGAAVGRAILAA 358


>gi|312114242|ref|YP_004011838.1| DNA-cytosine methyltransferase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219371|gb|ADP70739.1| DNA-cytosine methyltransferase [Rhodomicrobium vannielii ATCC 17100]
          Length = 363

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 177/436 (40%), Gaps = 104/436 (23%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F G GGLS G    G       I+ +E    AF+ N        N+   I R V  
Sbjct: 24   VVDLFCGAGGLSHGFHSEGFDIVA-GIDTDETCRYAFEHN--------NDAPFIRRDV-- 72

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                              A L    I +L +PG+   + G  PCQ FS  N+ N      
Sbjct: 73   ------------------AQLKGREIEDLFVPGRHRVLVGCAPCQPFSTYNQKNDDP--- 111

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + +++  F    D  +P    +ENV   ++F +G  FR  +  L    Y V + +L   
Sbjct: 112  -KWKLLSYFAGLIDEVRPDVVSMENVPRLLTFKEGAVFREFVDVLENADYHVIWKVLYGP 170

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             FG++Q+R R  + A+     L   P P H            DNY+              
Sbjct: 171  DFGLAQTRSRLVLLASRRGPIL--LPTPTH-----------KDNYR-------------- 203

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
              TV D IG+LP +G+G S        DP+                H +  ++++N+ R 
Sbjct: 204  --TVMDEIGELPPLGHGESD-----DADPL----------------HCASRLSDINVRRI 240

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                 +PG  W +  D           DL+  C  + A+    +  ++GR+ WE   PT 
Sbjct: 241  AA--SKPGGTWREWGD-----------DLVAAC--HKAETGRGYSSVYGRMKWEEPSPT- 284

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF---HGSIQHKH--RQIGNAVP 1537
            IT        G   HP+Q R L++RE A  QGFP  Y+F      IQ K   R IGNAVP
Sbjct: 285  ITTQFFGFGNGRFGHPEQARALSLREGAMLQGFPRDYEFVRPGERIQFKAIGRLIGNAVP 344

Query: 1538 PTLAFALGRKLKEAVE 1553
              LA A+ R +K+ +E
Sbjct: 345  VKLAAAIARAVKKHLE 360


>gi|169794286|ref|YP_001712079.1| cytosine-specific methyltransferase [Acinetobacter baumannii AYE]
 gi|213159140|ref|YP_002321138.1| DNA cytosine methyltransferase [Acinetobacter baumannii AB0057]
 gi|215481844|ref|YP_002324026.1| Modification methylase HgiDII(Cytosine-specificmethyltransferase
            HgiDII) [Acinetobacter baumannii AB307-0294]
 gi|332850048|ref|ZP_08432435.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii 6013150]
 gi|332871527|ref|ZP_08440021.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii 6013113]
 gi|417575262|ref|ZP_12226115.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii Canada
            BC-5]
 gi|421623462|ref|ZP_16064347.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii OIFC074]
 gi|421641908|ref|ZP_16082439.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii IS-235]
 gi|421647936|ref|ZP_16088347.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii IS-251]
 gi|421657072|ref|ZP_16097353.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
            Naval-83]
 gi|421698463|ref|ZP_16138005.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii IS-58]
 gi|421795872|ref|ZP_16231947.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
            Naval-21]
 gi|421799550|ref|ZP_16235541.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii Canada
            BC1]
 gi|169147213|emb|CAM85072.1| putative cytosine-specific methyltransferase [Acinetobacter baumannii
            AYE]
 gi|213058300|gb|ACJ43202.1| DNA cytosine methyltransferase [Acinetobacter baumannii AB0057]
 gi|213986404|gb|ACJ56703.1| Modification methylase HgiDII(Cytosine-specificmethyltransferase
            HgiDII) [Acinetobacter baumannii AB307-0294]
 gi|332730897|gb|EGJ62203.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii 6013150]
 gi|332731381|gb|EGJ62673.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii 6013113]
 gi|400205995|gb|EJO36975.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii Canada
            BC-5]
 gi|404572763|gb|EKA77805.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii IS-58]
 gi|408514660|gb|EKK16266.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii IS-235]
 gi|408516130|gb|EKK17709.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii IS-251]
 gi|408693248|gb|EKL38858.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii OIFC074]
 gi|408714638|gb|EKL59778.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
            Naval-83]
 gi|410401023|gb|EKP53185.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
            Naval-21]
 gi|410409572|gb|EKP61500.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii Canada
            BC1]
          Length = 355

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 178/431 (41%), Gaps = 99/431 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D F+GCGG SEGL+Q+G+  T   ++++  A E ++ N PE+L      NV +R +
Sbjct: 1    MKVIDFFSGCGGASEGLRQAGLDIT-IGLDFDIKAAETYQANFPEALFY----NVDIREL 55

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             EK              ELA +  E      PL           PCQ FS  N+    + 
Sbjct: 56   DEK--------------ELAKAFKEKNREKEPL-----LFVACAPCQPFSTQNK--SKSE 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ--TFRLTLASLLEMGYQVRFGI 1298
              ++  ++     F    +P Y L+ENV      +K +   ++  +  L    Y++   I
Sbjct: 95   DDIRRTLLDETHRFISKLKPEYILVENVPGLQKIDKEKDGPYKRFITFLESKKYKITEFI 154

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
             ++  +GV Q RKR F+  AS    + E P   H      +K                  
Sbjct: 155  AKSEEYGVPQKRKR-FVLLASKSGKI-EIPAKTHGEGLEPIK------------------ 194

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                  TVRD IG+ PA+  G      E   D + W              H S  +NE N
Sbjct: 195  ------TVRDFIGEFPAIKAG------EIHPDDL-W--------------HRSPTLNERN 227

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            L+R Q  P+  G D    P+            LI  C     K H+    ++GR+ W+  
Sbjct: 228  LVRIQNTPE--GGDRRHWPNH-----------LINEC----HKAHSGHMDVYGRMSWDKP 270

Query: 1479 FPTSITD--PQPMGKVGMCFHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
             PT  T       G+ G   HPD  Q R ++VRE +R Q FP  + F GS+    RQIGN
Sbjct: 271  APTLTTRCYSYSNGRFG---HPDTNQHRAISVREASRLQTFPQDFIFKGSVVEASRQIGN 327

Query: 1535 AVPPTLAFALG 1545
            AVP  +A   G
Sbjct: 328  AVPCEMAKQFG 338


>gi|291544225|emb|CBL17334.1| DNA-methyltransferase (dcm) [Ruminococcus champanellensis 18P13]
          Length = 407

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 188/434 (43%), Gaps = 104/434 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
             +T+++FAG GGL+ G++++G + T   +E ++ A +  + N PE            R +
Sbjct: 74   FSTIELFAGAGGLALGVEKAGFN-TLGLVEVDKDASDTLRKNRPE-----------WRVI 121

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             +   +   C+   E   L               G++D ++GG PCQ FS   +  +   
Sbjct: 122  NDDIANVS-CLDLQEYFGLKQ-------------GELDLLSGGAPCQSFSYAGK--RLGL 165

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE-MGYQVRFGIL 1299
               +  +   +  F +  QP+ FL ENVR  ++ +KG+T++ T+  + E  GY ++  +L
Sbjct: 166  EDARGTLFYHYAKFLEQLQPKMFLFENVRGLLTHDKGRTYK-TITDIFESTGYTIQKKVL 224

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV+Q R+R  I     +D               ++K      ++Y  V       
Sbjct: 225  NAWNYGVAQKRER-LITIGIRND------------LTNQIKFTFPTPHEYKPV------- 264

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                  +RD + D P           + +  P S ++++I                    
Sbjct: 265  ------LRDVLLDCP-----------KSEGTPYSEYKRKI-------------------- 287

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
               + +P  PG  W D+P++  K       + +  C      R     G+  RL  +   
Sbjct: 288  --FELVP--PGGYWRDIPEDIAK-------EYMKSCWYMEGGR----TGILRRLSLDEPS 332

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
             T +T P    +   C HP + R  T+RE AR Q FPD +QF GSI  +++Q+GNAVP  
Sbjct: 333  LTVLTSPS-QKQTDRC-HPLEPRPFTIRENARCQSFPDEWQFSGSIGSQYKQVGNAVPVN 390

Query: 1540 LAFALGRKLKEAVE 1553
            LA+ + +++K A+E
Sbjct: 391  LAYDIAKQIKIALE 404


>gi|448668261|ref|ZP_21686392.1| DNA-cytosine methyltransferase [Haloarcula amylolytica JCM 13557]
 gi|445768343|gb|EMA19428.1| DNA-cytosine methyltransferase [Haloarcula amylolytica JCM 13557]
          Length = 343

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 155/345 (44%), Gaps = 44/345 (12%)

Query: 1219 FINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278
             I GGPPC+GFS +     +     +  +   F+++ D+F+P +F++ENV    + N G 
Sbjct: 1    MIVGGPPCKGFSSIRPDRGTEAEDERNGLYTDFVNYVDFFEPDFFIMENVVGLATHNDGI 60

Query: 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
            T +  + S+ ++GY   + I+    FG+ Q R+R  I   S  D + E+P P H   A  
Sbjct: 61   TIQKIIDSVRDIGYSADWRIVNGANFGLPQRRER-LIMIGSGDDRVIEFPRPTH--QANG 117

Query: 1339 LKIMLSDNYQYSAVRSTANGAPFRA-------MTVRDTIGDLPAVGNGASKTIMEYQNDP 1391
              I   D  +    + T +   FRA        T+ D I DLP +  G  + + EY    
Sbjct: 118  RTIGYKDESKVITAQPTLDN--FRAGTSLPEGRTIMDAIDDLPELEAG--EEVTEYTKPA 173

Query: 1392 VSWFQKRIRGNMAVL-----TDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTG 1446
             + +Q+ +R N   L     T H SK M    +IR            H  P+++  +   
Sbjct: 174  QNEYQETMRKNSNELSLHKATKHQSKMM---TIIR------------HSGPNKEATIENL 218

Query: 1447 QVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT-SITDPQPMGKVGMCFHPDQDRILT 1505
            Q  D +           + +   + RLD +   P+ +IT          C HP QDR LT
Sbjct: 219  QASDEVDDV---EDYISSGYSSSYSRLDPD--LPSVTITMNFIHPASNKCIHPYQDRALT 273

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
             RE AR Q FPD ++F GS      QIGNAVPP     LGR L E
Sbjct: 274  PREGARIQSFPDDFEFVGSRSDIVEQIGNAVPP----LLGRVLAE 314


>gi|340795642|ref|YP_004761105.1| DNA cytosine-5-methyltransferase [Corynebacterium variabile DSM
            44702]
 gi|340535552|gb|AEK38032.1| DNA cytosine-5-methyltransferase [Corynebacterium variabile DSM
            44702]
          Length = 464

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 183/475 (38%), Gaps = 145/475 (30%)

Query: 1126 IFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCG 1185
             F+G  GL  GL+++G   +  A+E +    E    N P+ L +IN+       V E  G
Sbjct: 59   FFSGAMGLDLGLEETGWEPS-LAVEIDARFCETISRNKPD-LDIINS------DVAELTG 110

Query: 1186 DAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQC 1245
            +A           L A   EN         QVD + GGPPCQ FS   +  ++  S  + 
Sbjct: 111  EA-----------LFARTGEN---------QVDLMVGGPPCQSFSTGGK--RAALSDSRG 148

Query: 1246 EMILAFLSFADYFQPRYFLLENVRNFV---------------SFN--------------- 1275
              I  +L      +PR F+LENV N V               S+N               
Sbjct: 149  NAIFEYLRLISEVRPRAFVLENVANLVTAAIKHRPIAERPGKSWNLSSYSEANRPLKLDG 208

Query: 1276 --------------KGQTFRLTLASLL-EMGYQVRFGILEAGAFGVSQSRKRAFIWAASP 1320
                           G   R  L++ + ++GYQV+F +L+A  FG  Q R R F+     
Sbjct: 209  ISHDGPPPLTEDELSGSAIRHLLSTAVADLGYQVKFQVLDASDFGAPQRRLR-FVMIGMR 267

Query: 1321 HDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGA 1380
             +T P++  P H                   V  T        +TVRD IGDL  V N  
Sbjct: 268  DNTPPDFIGPTH------------------GVEQTPQ------VTVRDAIGDL--VDNPG 301

Query: 1381 SKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440
                      P + + +R R   +++ +                     G +W  LP++ 
Sbjct: 302  ----------PGALYSERTRRYFSLVPE---------------------GGNWRSLPEDV 330

Query: 1441 VKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQ 1500
             + + G+           +        G F RL WE   PT    P   G   MC HP  
Sbjct: 331  AREAMGE----------RSYNAGGGKTGFFRRLQWEAQSPTITGKPNRKGSA-MC-HPSD 378

Query: 1501 DRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             R L+V ECAR QGFPD ++  GS+  ++ QIGNAVP  L  A+G  L E    K
Sbjct: 379  TRPLSVHECARIQGFPDDWEIVGSVADQYTQIGNAVPVALGRAIGMTLNEPALPK 433


>gi|79835453|gb|ABB52085.1| Mod [Arthrospira platensis]
 gi|291569776|dbj|BAI92048.1| type II DNA modification methyltransferase [Arthrospira platensis
            NIES-39]
          Length = 429

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 194/472 (41%), Gaps = 93/472 (19%)

Query: 1103 GEDELEVEKQGGASQEN-HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
            G+D   +      + +N   + LD FAG GG S G Q +G +    AIE +E AGE F+ 
Sbjct: 21   GDDRTSISSHCTPNYQNMKYSVLDTFAGAGGFSLGFQWAG-AHIIGAIEIDEWAGETFQF 79

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQV--DF 1219
            NHP + ++                            ++    DE +++     G++    
Sbjct: 80   NHPNAHLI--------------------------KGDIKGITDEQILDTF---GEIKPHI 110

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV---SFNK 1276
            I GG PCQGFS  N+ N+      +  M    +  +   QP   ++ENV N +   + N+
Sbjct: 111  ILGGIPCQGFSICNQ-NKGDRQDSRNYMFQDLIRISSLLQPEIIIIENVPNLIKAKTTNR 169

Query: 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
                 L ++ L  +GYQV + IL A  +G+ Q RKR FI A     T P +P+P H  + 
Sbjct: 170  QLVIDLIMSKLRHLGYQVNYQILNATDYGIPQVRKRLFILAHRCDLTHP-FPQPTHTTS- 227

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQ 1396
                 + + N +             +  ++ + I DLP +  G     MEY   P   +Q
Sbjct: 228  -NQTELFTHNLK-------------KCPSLWEAISDLPDIDAGEGAEEMEYNKCPDHEYQ 273

Query: 1397 KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE--KVKLSTGQVVDLIPW 1454
            + +R     + +H + + ++  + R   +    G    D+P+    +K ++ Q  D I  
Sbjct: 274  QILRNGSDRVFNHKAMKHSQRLVQRFASMGW--GDSTSDVPNHLRPLKRNSHQFSDKI-- 329

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
                  +R + +K            P +     P        HP ++R  T RE AR Q 
Sbjct: 330  -YDQNNRRMSPYK------------PCNTI---PASFYANFVHPYKNRNFTAREGARIQS 373

Query: 1515 FPDSYQFHGS---IQHK---------------HRQIGNAVPPTLAFALGRKL 1548
            FPD Y F G    + HK               + QIGNAVPP +A A+   L
Sbjct: 374  FPDWYVFKGKPTVVSHKLLEREGRLAEKHLCQYNQIGNAVPPLMAKAIAENL 425


>gi|456873390|gb|EMF88765.1| DNA (cytosine-5-)-methyltransferase [Leptospira santarosai str.
            ST188]
          Length = 350

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 180/431 (41%), Gaps = 98/431 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  LD F G GGL+ GL+ +GI      I+ E    E+++ N+  S  +    N+ +R +
Sbjct: 1    MIALDFFCGAGGLTRGLKNAGIKVLA-GIDVENKCKESYEFNNKGSRFI----NLDIRNI 55

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
              K  + ED   T    +L                    I G  PCQ FS     +Q   
Sbjct: 56   GIK--ELEDVGITKHTKDL-------------------LIAGCAPCQPFSK----HQRKR 90

Query: 1241 SKVQCEMILA-FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
            S++    +L+ F       +P++ L+ENV          TF+  + SL ++GY+  + IL
Sbjct: 91   SRMPDATLLSEFGRVVKLVEPKFILIENVPGLSKVKGYNTFKRFVNSLEKLGYKYDYDIL 150

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            +A  FGV QSR+R  + A+   D   + P P+                            
Sbjct: 151  DAKYFGVPQSRRRLVLLASKEVDI--KLPNPIF----------------------GTESK 186

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
            PFR  TVRD IG  P +  G+                K +        +H+S  ++++NL
Sbjct: 187  PFR--TVRDAIGRFPDILAGS--------------VDKHV-------PNHVSASLSKINL 223

Query: 1420 IRCQKIPKRPGA--DWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
             R    PK  G   DW     + ++L           C  N  K H     ++GR+ W+ 
Sbjct: 224  ERISLTPKNGGCRFDW----PKHLELD----------CHKNGFKGHTD---VYGRMSWDQ 266

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
              PT       +   G   HP+Q+R +++RE A  Q FPD+Y F GS     +QIGNAVP
Sbjct: 267  PAPTLTGRCISLSN-GRYGHPEQNRAISLREAASLQSFPDNYVFFGSQISIAQQIGNAVP 325

Query: 1538 PTLAFALGRKL 1548
              LA  LG+ +
Sbjct: 326  VKLAEVLGKTI 336


>gi|58580230|ref|YP_199246.1| modification methylase XorII [Xanthomonas oryzae pv. oryzae KACC
            10331]
 gi|58424824|gb|AAW73861.1| Modification methylase XorII [Xanthomonas oryzae pv. oryzae KACC
            10331]
          Length = 442

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 189/466 (40%), Gaps = 112/466 (24%)

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            E+QG ++    +  +D+FAG GGLS G +Q+G      A++ +     A K N P+    
Sbjct: 12   ERQGHSAMTRPIG-IDLFAGAGGLSLGFEQAGFDLVA-AVDIDPIHCAAHKFNFPK---- 65

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
               C  + ++V++  GD        E   +A     ++          D + GG PCQGF
Sbjct: 66   ---CATVCKSVVDVTGD--------ELRRIAGIGKRDI----------DIVIGGAPCQGF 104

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            S + +         + +++  ++      +P+YF+ ENV+        Q  +  + +   
Sbjct: 105  SLIGK---RALDDSRNQLVHHYVRVVMELKPKYFVFENVKGLTVGKHRQFLKEVIEAFQN 161

Query: 1290 MGYQV--RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             GY V   + +L A  +GV Q R+R  +  A     LP +PEP                 
Sbjct: 162  GGYDVVTDYRVLNAADYGVPQDRRRLILMGARKGLPLPAYPEPTG--------------- 206

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGN--------------GASKTIMEY----QN 1389
                             TV D IGD+P   +              G   T   Y    ++
Sbjct: 207  ---------------RTTVGDAIGDIPDAESFPELWERDWVKAKYGKPSTYAAYLRGKKD 251

Query: 1390 DPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            DP  +  +R    M +LT  +  +  EL+  R   I           PD+   +S  + +
Sbjct: 252  DPTDFGYRRQFDPM-LLTGSLLTDHTELSRQRFAAI----------APDDVEPVSRFKKL 300

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVREC 1509
             L   C  NT +         G     G F    T P+P+       HP   R++TVRE 
Sbjct: 301  ALNGIC--NTLRA--------GTASDRGAF----TSPRPI-------HPTVPRVITVREA 339

Query: 1510 ARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            AR   +PD ++FH +  H  RQIGN+VPP LA A+G ++ +A+  K
Sbjct: 340  ARLHSYPDWFRFHATKWHGFRQIGNSVPPLLARAVGGQIMKALRKK 385


>gi|419707424|ref|ZP_14234908.1| Cytosine-specific methyltransferase [Streptococcus salivarius PS4]
 gi|383282770|gb|EIC80750.1| Cytosine-specific methyltransferase [Streptococcus salivarius PS4]
          Length = 428

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 186/443 (41%), Gaps = 71/443 (16%)

Query: 1124 LDIFAGCGGLSEGLQQSG------ISSTKWAIEYEEPAGEAFKLNHPESLMLIN---NCN 1174
            +D+FAG GGLSEG  Q+G      +   K+A +  E     + L +  +L L     N  
Sbjct: 13   IDLFAGAGGLSEGFLQAGFTPIAHVEMNKFAAKTLETRSAYYYLKNSNNLALYKKYLNGK 72

Query: 1175 VILRAVMEK--CGDAEDCVSTSEAAELAASLDENVINNLPLPG--QVDFINGGPPCQGFS 1230
            +     M++      +  ++ + + E   S+ + +   + + G  ++D I GGPPCQ +S
Sbjct: 73   ITREDFMKQIPASITKTIINETMSDESLPSIFKTIDGIMKIRGISKIDVIVGGPPCQAYS 132

Query: 1231 GMNRFNQSTWSKVQCE------MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
             + R  QS+  ++  E      +   +  F   +QPR F+ ENV   +S N G T++   
Sbjct: 133  LVGR-AQSSRMEIPMEEDPRNYLYKLYARFLKRYQPRMFVFENVTGILSANNGITWKNIQ 191

Query: 1285 ASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFAAPELKIM 1342
              L  +GY++      +  FGV Q+R+R  I  W        P++ E             
Sbjct: 192  KYLKRVGYEIECREQNSKTFGVLQNRRRMIIVGWLKETSLNYPDFLE------------- 238

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
                     V++ A         V D   DLP +  G S      +       +  +R  
Sbjct: 239  ---------VKTNA--------LVNDLFTDLPVLHPGESCNTYTKKKASNYVVETGLRTK 281

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
              +LT H  +     N+ R  KI +R    W+   D   +L+           LP+  K 
Sbjct: 282  DDILTHHNCRP----NIDRDIKIYQRAIELWN---DGHKRLNYND--------LPDELKT 326

Query: 1463 HNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDS 1518
            H        R    EG+ P   T    + K G  F HPD  Q R +TVRE AR Q FPDS
Sbjct: 327  HKNRHSFVDRFKVVEGDEPYCHTILAHLSKDGHYFIHPDMEQHRSITVREAARIQSFPDS 386

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLA 1541
            Y F GS   +  QIGNAVPP +A
Sbjct: 387  YFFEGSRTSQFVQIGNAVPPLMA 409


>gi|334119885|ref|ZP_08493969.1| DNA-cytosine methyltransferase [Microcoleus vaginatus FGP-2]
 gi|333457526|gb|EGK86149.1| DNA-cytosine methyltransferase [Microcoleus vaginatus FGP-2]
          Length = 394

 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 176/438 (40%), Gaps = 94/438 (21%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            +LD+F G GGL+ G +++GI +    I+Y E A + F+ N      L+++          
Sbjct: 12   SLDLFCGMGGLTLGFKRAGIQAI-GGIDYCENAKQTFERNLSPLPCLVSDLT------QT 64

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF-----NQ 1237
               + E+    S A                   ++D I GG PCQGFS + +        
Sbjct: 65   TVSEIEEFFKISAA-------------------EIDIITGGAPCQGFSTVGKREITDPRN 105

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
            S W          F       +P Y ++ENV   +    G+     +AS  ++GY ++  
Sbjct: 106  SLWRN--------FRDLVAEIRPAYVIIENVEGMLVMQGGKVRDSVIASFADIGYHMKCR 157

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            +L+A  +GV Q RKRAF          PE+P P            +S  Y          
Sbjct: 158  LLKAADYGVPQLRKRAFFIGWLDGLLPPEFPVP------------ISHYY---------- 195

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                  +TV D I DLP +  G  +    YQ+ P + +Q   R    +L  H +   ++ 
Sbjct: 196  ------VTVADAISDLPPLNAG--EICKSYQSMPQTDYQIARRKTANILLHHEAANHSQK 247

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
             +   + IP   G +   +PD                 L   +  HN +  L        
Sbjct: 248  LIEILKYIPD--GGNRKSIPDR----------------LQPASGFHNSYARL------AS 283

Query: 1478 NFPT-SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
            N P  ++T            HP Q R LTVRE  R Q F D ++  GS   ++ Q+GNAV
Sbjct: 284  NKPAIAVTSNMRKPSSARATHPSQHRGLTVREGLRLQSFDDDFEVMGSRTSQYLQVGNAV 343

Query: 1537 PPTLAFALGRKLKEAVES 1554
            PP L  A+G+++ +A +S
Sbjct: 344  PPLLGLAVGKEVVKAYQS 361


>gi|218244975|ref|YP_002370346.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165453|gb|ACK64190.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 423

 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 173/434 (39%), Gaps = 111/434 (25%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            +SQ+  L+ +++FAGCGG++ GL+ +G+  T+  +E +       + N P   +L     
Sbjct: 67   SSQKTELSVIELFAGCGGMALGLENAGLK-TELLVEIDRDCVNTLQKNRPYWPIL----- 120

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
                         ED                  I+     G++D ++GG PCQ FS   +
Sbjct: 121  ------------QEDVTK---------------IDFRSYQGKIDIVSGGFPCQAFSYAGK 153

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
                 +   +  +   F       QP+  L ENVR  +S  +G+T  + L SL E+GY+ 
Sbjct: 154  --GKGFEDTRGTLFFEFARCLAEVQPKIALAENVRGLLSHQQGKTLSIMLESLEELGYKP 211

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             + ++ A    V Q R+R  I A      +P       +F  P+       NY       
Sbjct: 212  SYQVVSAQFLDVPQKRERVVIIAVRNDLAIPA------LFPTPK-------NY------- 251

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                     +++R+ + + P                                 D I  E 
Sbjct: 252  --------TISLREALQNCP---------------------------------DSIGVEY 270

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
            NE      + +P   G +W +LP E  K             + N+  +     G   RL 
Sbjct: 271  NERKKAIMELVPS--GGNWRNLPLETQKKY-----------MKNSFFKGGGRTGFAKRLS 317

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+    T    P    +   C HPD+ R LTVRE AR Q FPD ++F GS+  +++QIGN
Sbjct: 318  WDEPCLTITCSP-AQTQTERC-HPDETRPLTVREYARVQTFPDEWEFTGSLTSQYKQIGN 375

Query: 1535 AVPPTLAFALGRKL 1548
            AVP  +++ LGR L
Sbjct: 376  AVPVNMSYHLGRGL 389


>gi|420461842|ref|ZP_14960629.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-3]
 gi|393080005|gb|EJB80734.1| cytosine-specific methyltransferase [Helicobacter pylori Hp H-3]
          Length = 325

 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 158/348 (45%), Gaps = 59/348 (16%)

Query: 1209 NNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
            +NLP +P  +D + GGPPCQ +S + +         +  +   +L   D  +P+ F+ EN
Sbjct: 33   HNLPCIP--IDILLGGPPCQSYSTLGKRKMDE----KANLFKEYLRILDLVKPKIFVFEN 86

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V   +S  KGQ F+    +  E  Y +   IL A  +GV Q R+R  +  A     L  +
Sbjct: 87   VVGLMSMQKGQLFQRICNAFKERDYILEHAILNALDYGVPQIRERVILVGA-----LKSF 141

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
             +  H F  P +K   S                     ++D +GDLP + +G +   + Y
Sbjct: 142  KQKFH-FPKP-IKTHFS---------------------LKDALGDLPPIQSGENGDALGY 178

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
              +  + F + +R N   L++H S + NE  LI+  +  K  G    DLP E ++  +G 
Sbjct: 179  LKNADNVFLEFVR-NSKELSEHSSPKNNE-KLIKIMQTLKD-GQSKDDLP-ESLRPKSGY 234

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
            +         NT          + ++ WE   PT IT          C HP   R L++R
Sbjct: 235  I---------NT----------YAKMWWEKPAPT-ITRNFSTPSSSRCIHPRDSRALSIR 274

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            E AR Q FPD+Y+F+GS   K  QIGNAVPP L+ AL   + + +  K
Sbjct: 275  EGARLQSFPDNYKFYGSGSAKRLQIGNAVPPLLSAALAHAVFDFLRGK 322


>gi|160894869|ref|ZP_02075643.1| hypothetical protein CLOL250_02419 [Clostridium sp. L2-50]
 gi|156863300|gb|EDO56731.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. L2-50]
          Length = 423

 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 191/467 (40%), Gaps = 80/467 (17%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN------ 1171
            EN L  +D+FAG GGLSEG  QSG       +E  E A +  +       +  N      
Sbjct: 3    ENGLNYIDLFAGAGGLSEGFIQSGYRPVA-HVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 1172 ----NCNVILRAVMEKCGDAE-DCVSTSEAAELAASLDENVINNLPLPGQVDFIN---GG 1223
                   +    ++EK    E   V   E +E       N I+++    ++D I+   GG
Sbjct: 62   YDYEKGKITREQLLEKIPKEELKTVINQEMSESTIKGIFNTIDDIKREKEIDKIDVIIGG 121

Query: 1224 PPCQGFSGMNRFNQSTWSKV------QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            PPCQ +S + R  QS+   V      + E+   ++ F   ++PR F+ ENV    +   G
Sbjct: 122  PPCQAYSLVGR-AQSSHMIVPMEDDPRNELYKMYVQFLKKYKPRMFVFENVAGIKTARGG 180

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFA 1335
              F+     +  +GY++ +  L A  FGV QSRKR  I  W      T  E+P       
Sbjct: 181  VAFKNLQTYMKRVGYEIDYHELNAQNFGVLQSRKRVIIVGWLKG---TGYEYP------- 230

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                         +  + S A         V D + DLP +  G      E+  + +   
Sbjct: 231  ------------SFDVIHSKAE--------VWDLLKDLPPLTPGIEAR--EHTMNDMRRL 268

Query: 1396 QKRIRGNMA-----VLTDHISKEMNELNLIRCQKIPKRPGADW-HDLPDEKVKLSTGQVV 1449
            +K ++ N       VLT H ++     ++    +I KR    W  +   E++K       
Sbjct: 269  KKYVKDNGIRMKSDVLTGHAARPHTAQDI----EIYKRTIDMWFENEQHERLKYDD---- 320

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILT 1505
                  LP   K H        R    EG+     T    + K G  F HPD  Q R +T
Sbjct: 321  ------LPEDLKTHKNRTSFVDRFKVVEGDMDHCHTILAHLSKDGHYFIHPDIEQHRSIT 374

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            VRE AR Q FPD+Y F G    +  Q+GNAVPP +A  +  K+KE +
Sbjct: 375  VREAARIQSFPDNYYFEGPRTAQFVQVGNAVPPMMAKVIADKIKEQL 421


>gi|17229768|ref|NP_486316.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17131367|dbj|BAB73975.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 431

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 188/437 (43%), Gaps = 75/437 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG+S G +Q+G      A+E +       + N P        C+V+ ++V E
Sbjct: 19   AVDLFAGAGGMSLGFEQAGFDVLA-AVEIDPIHCAVHEYNFP-------FCSVLCKSVEE 70

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G                  D + INN     ++D I  G PCQGFS M +     +  
Sbjct: 71   TTGKEIR--------------DRSKINN----QEIDVIICGSPCQGFSLMGK---RVFDD 109

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             +  ++  F       QP++F++ENVR        Q  +  +      GYQV   + +L 
Sbjct: 110  PRNSLVFHFHRLVLELQPKFFVMENVRGITFGEHKQILQALIYEFKSHGYQVEENYQVLN 169

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R+R F+  A     LP++P+P+        K   S+N   S  R+ +   P
Sbjct: 170  AAHYGVPQARERLFLIGAREDVKLPKYPKPI-------TKPAKSNN---SKARNLSR-LP 218

Query: 1361 FRAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                 V + IGDLP V            I EY     S +   +RG   +  D+    + 
Sbjct: 219  L-CPNVWEAIGDLPEVEQYPELLTRDWIIAEYGKP--SNYAAVLRGISTLADDYSCDRLF 275

Query: 1416 ELNLIRCQKIPKRPGADWH----DLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            +  L+      K   A        +P E+  +S  +   L P  + NT +         G
Sbjct: 276  DSRLLSSSLRTKHSQATIERFAATVPGEREPIS--RFHKLHPSGVCNTLRA--------G 325

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
               ++G+F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ
Sbjct: 326  TDKFKGSF----TSPRPI-------HPLTPRCITVREAARLHSYPDWFRFHITKWHGFRQ 374

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GN+VPP LA A+ R++
Sbjct: 375  VGNSVPPLLAKAVAREI 391


>gi|171679563|ref|XP_001904728.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939407|emb|CAP64635.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1287

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 218/546 (39%), Gaps = 77/546 (14%)

Query: 1018 EVYYSEETHLIFVEAIAGKCEVR---KKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074
            E+ Y+++  ++  + I G+C+VR     + IP+        ++F+  H  D ++  +  L
Sbjct: 727  ELVYTDKFVVMKPDRITGRCQVRVFEADSPIPSPYNRGGTGNLFYITHQLDGTRQKVVPL 786

Query: 1075 PAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLS 1134
              ++ L    G  D  A + RK                        L  +D+F G G L 
Sbjct: 787  -GNMPLTLRQG-FDPRAGNARK------------------------LRGMDLFCGSGNLG 820

Query: 1135 EGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194
             GL+  G    +WA +  + A   +  N P+  +           V    G  +D     
Sbjct: 821  RGLEDGGAIEMRWAADTWDKAIHTYMANAPDQDI-----------VHPFYGSVDDL---- 865

Query: 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSF 1254
                L  +L+    +N+P PG V+ I+ G PC GFS +    +         M+ +F +F
Sbjct: 866  ----LRLALEGKFSDNVPRPGDVEVISAGSPCPGFSLLTIDKKDLKQTKNQSMVASFAAF 921

Query: 1255 ADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRK 1311
             D+++P+Y +LENV + V  ++ +   T      +++ +GYQ +    +A   G  QSR 
Sbjct: 922  IDFYRPKYAVLENVASIVQAHQNRSQDTLSQLFCAVIGLGYQAQLVNGDAWTHGAPQSRN 981

Query: 1312 RAFIWAASPHDTLPEWPEPMHVF--AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDT 1369
            R F+  A+P   LPE P P H       +  I    N +    R      PF+  +  + 
Sbjct: 982  RVFLLIATPDVRLPEAPAPSHSHYPGTKQRGIGKLCNGEAYVRRFLDIPTPFKYTSSSEA 1041

Query: 1370 IGDLPAVGNGASKTIMEYQNDPVS-WFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPK- 1427
              DLP + +G     + +    ++  F   IR  +AV    I    + +N ++     K 
Sbjct: 1042 TADLPDIIDGMVDACVSHPEHRLTIGFTGAIRQQVAV----IPIFPHGMNFVKTWNGGKG 1097

Query: 1428 -RPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDP 1486
                AD    P  +  +  G+V           A     W  L   L     FPT  T  
Sbjct: 1098 VMTAADRELFPSGEGTMR-GRV-----------ASTAQGWSRLTPNL----AFPTITTAL 1141

Query: 1487 QPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
             P   +     H  + R  T+ E  R+QGF +     G    K + +GN+V   +A ALG
Sbjct: 1142 DPRDARTANGLHWRESRPFTLAEARRAQGFSEEEVLLGRQSDKWKLVGNSVSRHMAVALG 1201

Query: 1546 RKLKEA 1551
             K +EA
Sbjct: 1202 LKFREA 1207


>gi|268607976|ref|ZP_06141707.1| cytosine-specific DNA-methyltransferase Sau96I [Ruminococcus
            flavefaciens FD-1]
          Length = 407

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 190/439 (43%), Gaps = 104/439 (23%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            ++    +T+++FAG GGL+ G++++G + T   +E ++ A +  + N PE          
Sbjct: 69   TEARTFSTIELFAGAGGLALGVEKAGFN-TLGLVEVDKDASDTLRRNRPE---------- 117

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
              R + +   +   C+   E   L               G++D ++GG PCQ FS   + 
Sbjct: 118  -WRVINDDIANVS-CLDLQEYFGLKQ-------------GELDLLSGGAPCQSFSYAGK- 161

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE-MGYQV 1294
             +      +  +   +  F +  QP+ FL ENVR  ++ +KG+T++ T+  + E  GY +
Sbjct: 162  -RLGLEDARGTLFYHYAKFLEQLQPKMFLFENVRGLLTHDKGRTYK-TITDIFESTGYTI 219

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
            +  +L A  +GV+Q R+R  I     +D               ++K      ++Y  V  
Sbjct: 220  QKKVLNAWDYGVAQKRER-LITIGIRND------------LTNQIKFTFPTPHEYKPV-- 264

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                       +RD + D P           + +  P S ++++I               
Sbjct: 265  -----------LRDVLLDCP-----------KSEGTPYSEYKRKI--------------- 287

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
                    + +P  PG  W D+P++  K       + +  C      R     G+  RL 
Sbjct: 288  -------FELVP--PGGYWRDIPEDIAK-------EYMKSCWYMEGGR----TGILRRLS 327

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
             +    T +T P    +   C HP + R  T+RE AR Q FPD +QF GSI  +++Q+GN
Sbjct: 328  LDEPSLTVLTSPS-QKQTDRC-HPLEPRPFTIRENARCQSFPDEWQFCGSIGSQYKQVGN 385

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            AVP  LA+ + +++K A+E
Sbjct: 386  AVPVNLAYDIAKQIKIALE 404


>gi|323650451|gb|ADX97303.1| M.FseI [Frankia sp. Eul1b]
          Length = 374

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 175/430 (40%), Gaps = 105/430 (24%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
             S E+    +D+F G GG++ G  Q+G      +I+++ P+ E  + N P          
Sbjct: 20   VSSESKPTLIDLFCGAGGMTLGFMQAGFQPI-LSIDHDLPSIETHRANFPG--------- 69

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
                  M  C D  D V    A                     D + GGPPCQGFS + +
Sbjct: 70   ------MSICTDIRDFVDFPSA---------------------DVVVGGPPCQGFSRLGK 102

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
              Q+   +++  +   ++      +P  F++ENV  F+   K   F        ++GY++
Sbjct: 103  --QARKERLENFLWKDYMRCVASSKPSVFVIENVPEFL---KDPAFLGVSEESEKLGYKL 157

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
               +L A  FGV Q R+R  +  +      P  P   H     ++  + ++   +S    
Sbjct: 158  TVSVLNAADFGVPQRRQRTIMIGS--RIGPPSLPRATHQKPGDQMN-LFTELPTWS---- 210

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                      TVRD IGDLP          +E  N+ +                H S+ +
Sbjct: 211  ----------TVRDAIGDLP----------LEPTNENL----------------HNSRNV 234

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
            ++L+L R + +P  PG +  DLP+           DL P C      R      L GRL+
Sbjct: 235  SKLSLERYRHVP--PGGNRKDLPE-----------DLQPDCWRYKDPRGGGSTDLMGRLE 281

Query: 1475 WEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            W+       T    P+     G   HP  DR +TVRE AR Q FPD ++F GS+    +Q
Sbjct: 282  WDAPSLTIRTQFLKPE----KGRYLHPAADRSITVREGARLQTFPDDFKFTGSVFQTVKQ 337

Query: 1532 IGNAVPPTLA 1541
            IGNAVP  LA
Sbjct: 338  IGNAVPVELA 347


>gi|386356566|ref|YP_006054812.1| DNA-cytosine methyltransferase [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|365807074|gb|AEW95290.1| DNA-cytosine methyltransferase [Streptomyces cattleya NRRL 8057 = DSM
            46488]
          Length = 611

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 189/439 (43%), Gaps = 98/439 (22%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GGLS GLQ++G + T  A++++E A E    N P   + ++  N   R  +E+
Sbjct: 1    MDLFSGAGGLSLGLQRAGWT-TAAAVDFDERALETHAANFPGMSLHMDLGNPAERDRLEE 59

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR--------F 1235
              +                         P  G++D + GGPPCQ FS   R         
Sbjct: 60   LLE-------------------------PAKGKIDLVAGGPPCQPFSRAGRSKIRHLVEH 94

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
            +      ++ E+  A+L      +PR  L+ENV +    +     R+    L E+GY  +
Sbjct: 95   HGRDPHDLRKELWSAYLDVIKRIRPRAVLMENVPDMGLGDDFFVVRVIEQQLEELGYATQ 154

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
              +++A  +GV Q RKR  + A +  +   EW + +                        
Sbjct: 155  VRLVDAWRYGVPQHRKRLILLARNDIERF-EWQQEV------------------------ 189

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ------NDPVSWFQK--RIRGNMAVLT 1407
               A     T+R  IGDLP +    ++ + E +      ++ +S F +  R R    V+ 
Sbjct: 190  ---AEDERTTLRHAIGDLPPLTVVPTERVGEREMAYGTPSEDLSDFAREMRKRAKREVVF 246

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADW--HDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            DH+++ +             RP  DW   D  D     S     D+ P     +A+    
Sbjct: 247  DHMTRRV-------------RPD-DWVIFDSMDSDTLYS-----DIDPELQRYSAE---H 284

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGS 1524
            +   + +LDW+ +   SIT    + K G  + HPDQ+R LTVRE AR Q FPD ++F G+
Sbjct: 285  FTDKYKKLDWD-DLSRSIT--AHIAKDGYWYIHPDQNRTLTVREAARVQTFPDRFRFAGT 341

Query: 1525 IQHKHRQIGNAVPPTLAFA 1543
                 RQIGNAVPP L  A
Sbjct: 342  RSDAFRQIGNAVPPLLGKA 360


>gi|160934346|ref|ZP_02081733.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
 gi|156867019|gb|EDO60391.1| DNA (cytosine-5-)-methyltransferase [Clostridium leptum DSM 753]
          Length = 433

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 198/451 (43%), Gaps = 104/451 (23%)

Query: 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164
            D +E      + ++   +T+++FAG GGL+ G++++G  +    IE+++ A +  K N P
Sbjct: 85   DIMEFTDDSKSVKQKFFSTIELFAGAGGLALGIEEAGFDTIG-LIEFDKAASDTLKCNRP 143

Query: 1165 ESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGP 1224
               ++ ++   I       C D E+  +  +                   G++D ++GG 
Sbjct: 144  NWRVINDDIANI------SCLDLEEYFNIKK-------------------GELDLLSGGA 178

Query: 1225 PCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL 1284
            PCQ FS   +  +      +  +   +  F +  QP+ FL ENVR  ++ +KG+T++ T+
Sbjct: 179  PCQAFSYAGK--RLGLEDARGTLFYHYAKFLEQLQPKMFLFENVRGLLTHDKGRTYK-TI 235

Query: 1285 ASLLEM-GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
              + E  GY ++  +L A  +GV  ++KR  +      + L +  +    F AP      
Sbjct: 236  TDIFESEGYTIQKQVLNAWDYGV--AQKRERLITIGIRNDLVQ--KIKFDFPAP------ 285

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM 1403
               ++Y  V             +RD + D P                         +   
Sbjct: 286  ---HKYKPV-------------LRDILLDCP-------------------------QSEG 304

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
            +  +DH  +++ EL       +P  PG  W D+P++  K       + +  C      R 
Sbjct: 305  SQYSDH-KRKIFEL-------VP--PGGYWRDIPEDIAK-------EYMKSCWYMEGGR- 346

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
                G+  RL  +    T +T P    +   C HP + R  T+RE AR Q FPD +QF G
Sbjct: 347  ---TGILRRLSLDEPSLTVLTSPS-QKQTDRC-HPLEPRPFTIRENARCQSFPDDWQFCG 401

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
            S+  +++Q+GNAVP  LA+ +  K++EA+ES
Sbjct: 402  SVGQQYKQVGNAVPVNLAYEIAVKIREALES 432


>gi|312200922|ref|YP_004020983.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232258|gb|ADP85113.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 384

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 173/430 (40%), Gaps = 105/430 (24%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
             S E+    +D+F G GG++ G  Q+G      +I+++ P+ E  + N P          
Sbjct: 30   VSSESKPTLIDLFCGAGGMTLGFMQAGFQPI-LSIDHDLPSIETHRANFPG--------- 79

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
                  M  C D  D V    A                     D + GGPPCQGFS + +
Sbjct: 80   ------MSICTDIRDFVDFPSA---------------------DVVVGGPPCQGFSRLGK 112

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
              Q+   +++  +   ++      +P  F++ENV  F+   K   F        ++GY++
Sbjct: 113  --QARKERLENFLWKDYMRCVASSKPSVFVIENVPEFL---KDPAFLGVSEESEKLGYKL 167

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
               +L A  FGV Q R+R  +  +      P  P   H     ++ +      +    R 
Sbjct: 168  TVSVLNAADFGVPQRRQRTIMIGS--RIGPPSLPRATHQKPGDQMNLFT----ELPTWR- 220

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                      TVRD IGDLP          +E  N+ +                H S+ +
Sbjct: 221  ----------TVRDAIGDLP----------LEPTNENL----------------HNSRNV 244

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
            ++L+L R + +P  PG +  DLP+           DL P C      R      L GRL+
Sbjct: 245  SKLSLERYRHVP--PGGNRKDLPE-----------DLQPDCWRYKDPRGGGSTDLMGRLE 291

Query: 1475 WEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            W+       T    P+     G   HP  DR +TVRE AR Q FPD ++F GS+    +Q
Sbjct: 292  WDAPSLTIRTQFLKPE----KGRYLHPAADRSITVREGARLQTFPDDFKFTGSVFQTVKQ 347

Query: 1532 IGNAVPPTLA 1541
            IGNAVP  LA
Sbjct: 348  IGNAVPVELA 357


>gi|218134945|ref|ZP_03463749.1| hypothetical protein BACPEC_02850 [[Bacteroides] pectinophilus ATCC
            43243]
 gi|217990330|gb|EEC56341.1| DNA (cytosine-5-)-methyltransferase [[Bacteroides] pectinophilus ATCC
            43243]
          Length = 416

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 188/462 (40%), Gaps = 80/462 (17%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLIN------ 1171
            EN L  +D+FAG GGLSEG  QSG       +E  E A +  +       +  N      
Sbjct: 3    ENGLNYIDLFAGAGGLSEGFIQSGYRPVA-HVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 1172 ----NCNVILRAVMEKCGDAE-DCVSTSEAAELAASLDENVINNLPLPGQVDFIN---GG 1223
                   +    ++EK    E   V   E +E       N I+++    ++D I+   GG
Sbjct: 62   YDYEKGKITREQLLEKIPKEELKTVINKEMSESTIKGIFNTIDDIKREKEIDKIDVIIGG 121

Query: 1224 PPCQGFSGMNRFNQSTWSKV------QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            PPCQ +S + R  QS+   V      + E+   ++ F   ++PR F+ ENV    +   G
Sbjct: 122  PPCQAYSLVGR-AQSSHMIVPMEDDPRNELYKMYVQFLKKYKPRMFVFENVAGIKTARGG 180

Query: 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFA 1335
              F+     +  +GY++ +  L A  FGV QSRKR  I  W      T  E+P       
Sbjct: 181  AAFKNLQTYMKRVGYEIDYHELNAQDFGVLQSRKRVIIVGWLKG---TGYEYP------- 230

Query: 1336 APELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF 1395
                         +  + S A         V D + DLP +  G     +E+    +   
Sbjct: 231  ------------SFDVIHSKAE--------VWDLLNDLPVLKPGEEA--IEHTMTDMRRL 268

Query: 1396 QKRIRGN-----MAVLTDHISKEMNELNLIRCQKIPKRPGADW-HDLPDEKVKLSTGQVV 1449
            +K ++ N       VLT HI++     ++    +I KR    W  +   E++K       
Sbjct: 269  KKYVKDNDIRVKSDVLTGHIARPHTAQDI----EIYKRTIDMWFENEQHERLKYDD---- 320

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILT 1505
                  LP   K H        R    EG+     T    + K G  F HPD  Q R +T
Sbjct: 321  ------LPEDLKTHKNRTSFVDRFKVVEGDMDHCHTILAHLSKDGHYFIHPDIEQHRSIT 374

Query: 1506 VRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
            VRE AR Q FPD+Y F G    +  Q+GNAVPP +A  +  K
Sbjct: 375  VREAARIQSFPDNYYFEGPRTAQFVQVGNAVPPMMAKVIADK 416


>gi|448336029|ref|ZP_21525144.1| DNA-cytosine methyltransferase [Natrinema pallidum DSM 3751]
 gi|445630921|gb|ELY84180.1| DNA-cytosine methyltransferase [Natrinema pallidum DSM 3751]
          Length = 458

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 198/496 (39%), Gaps = 104/496 (20%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + +D+F G GGLSEGL+++G    +WA++Y+E A E  + NH          +  ++A +
Sbjct: 6    SAIDLFCGAGGLSEGLRRAGYD-VRWAVDYDESAVETHRENH---------GDYAIQADI 55

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
             +   AED                        PG +D + GGPPC  FS + R    +  
Sbjct: 56   RETEPAEDGPDIE-------------------PGNLDLVAGGPPCPSFSTIGRSKLGSLE 96

Query: 1242 KVQCE------MILAFLSFADYFQPRYFLLENVRNFVSFN-------------------- 1275
                +      + L FL +  +FQPR F++ENV   ++                      
Sbjct: 97   DRSVDEDDRNVLYLDFLRYVKHFQPRAFVMENVPGMLTDTVTVESDTVQESLPIGEEQGV 156

Query: 1276 ----KGQTFRLTLASLLEM---GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE-- 1326
                 G+   +T   + EM   GY V   +++A  FGV Q R+R F         LPE  
Sbjct: 157  EQSPVGEEVPVTEIIIEEMEGLGYTVDKFLVDAADFGVPQHRERLFFIGRRTGKALPELT 216

Query: 1327 -W---PEPM------HVFAAPELKIMLSDNYQYSAVRSTANGAPFRA--------MTVRD 1368
             W    EP        +   PELK     + +      ++   PF          +TV D
Sbjct: 217  RWYTHREPTDREKDQQMQIRPELKDSTDKSQETFETGLSSVLPPFEPDREYRLPYLTVAD 276

Query: 1369 TIGDLPAV---GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKI 1425
             I DLP +   G        EY   PVS +Q+ +R N+    D   + +   +       
Sbjct: 277  AIMDLPPISPDGEMPPSQATEYTLPPVSPYQEWVR-NVPDGEDWEDQPLRNHD------- 328

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP--TSI 1483
                 A WH+  D  +    G  V    W +   + R   ++       ++   P   + 
Sbjct: 329  -----ARWHNHLDLSIYKLLGHGVG---WNIGQVSTRLQPYRDDVFSDKYKKQNPGKPAS 380

Query: 1484 TDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            T    M K G  F HP + R L+ RE AR Q F D+Y F  S  + +R IGNAVPP L  
Sbjct: 381  TILAHMRKDGHMFIHPTEARSLSPREAARLQSFRDTYWFPESRTNAYRLIGNAVPPRLGE 440

Query: 1543 ALGRKLKEAVESKRST 1558
            A+G  +++ + S   T
Sbjct: 441  AVGVVVRQTILSDSHT 456


>gi|409991231|ref|ZP_11274511.1| site-specific DNA-methyltransferase [Arthrospira platensis str.
            Paraca]
 gi|409937907|gb|EKN79291.1| site-specific DNA-methyltransferase [Arthrospira platensis str.
            Paraca]
          Length = 388

 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 184/450 (40%), Gaps = 92/450 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD FAG GG S G Q +G +    AIE +E AGE F+ NHP + ++              
Sbjct: 2    LDTFAGAGGFSLGFQWAG-AHIIGAIEIDEWAGETFQFNHPNAHLI-------------- 46

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQV--DFINGGPPCQGFSGMNRFNQSTWS 1241
                          ++    DE +++     G++    I GG PCQGFS  N+ N+    
Sbjct: 47   ------------KGDIKGITDEQILDTF---GEIKPHIILGGIPCQGFSICNQ-NKGDRQ 90

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFV---SFNKGQTFRLTLASLLEMGYQVRFGI 1298
              +  M    +  +   QP   ++ENV N +   + N+     L ++ L  +GYQV + I
Sbjct: 91   DSRNYMFQDLIRISSLLQPEIIIIENVPNLIKAKTTNRQLVIDLIMSKLRHLGYQVNYQI 150

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +G+ Q RKR FI A     T P +P+P H           + + Q          
Sbjct: 151  LNATDYGIPQVRKRLFILAHRCDLTHP-FPQPTH-----------TTSNQTELFTHNLKK 198

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             P    ++ + I DLP +  G     MEY   P   +Q+ +R     + +H + + ++  
Sbjct: 199  CP----SLWEAISDLPDIDAGEGAEEMEYNKCPDHEYQQILRNGSDRVFNHKAMKHSQRL 254

Query: 1419 LIRCQKIPKRPGADWHDLPDE--KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            + R   +    G    D+P+    +K ++ Q  D I        +R + +K         
Sbjct: 255  VQRFASMGW--GDSTSDVPNHLRPLKRNSHQFSDKI---YDQNNRRMSPYK--------- 300

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS---IQHK----- 1528
               P +     P        HP ++R  T RE AR Q FPD Y F G    + HK     
Sbjct: 301  ---PCNTI---PASFYANFVHPYKNRNFTAREGARIQSFPDWYVFKGKPTVVSHKLLERE 354

Query: 1529 ----------HRQIGNAVPPTLAFALGRKL 1548
                      + QIGNAVPP +A A+   L
Sbjct: 355  GRLAEKHLCQYNQIGNAVPPLMAKAIAENL 384


>gi|167046802|ref|YP_001661472.1| DNA methyltransferase [Acinetobacter venetianus]
 gi|83833711|gb|ABC47668.1| DNA methyltransferase [Acinetobacter venetianus]
          Length = 737

 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 185/437 (42%), Gaps = 96/437 (21%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            D+F+G GG +EGL+ +G+     A +++  A EA++ NH +                 +C
Sbjct: 375  DLFSGVGGFTEGLKSAGLDCILGA-DFDRYAVEAYRKNHTD----------------HEC 417

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRF----NQS 1238
             +A D         +A  L E          +VD + GGPPCQGFS  G  RF    N  
Sbjct: 418  LEA-DLSDEEIQHNIAMRLKEQ---------KVDLVVGGPPCQGFSIFGKRRFVNTKNHQ 467

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
                 +  ++ AF +     + ++F++ENV   +S   G+  +       E GY+    +
Sbjct: 468  ISEDKRNNLVFAFANIVIKSEAKWFIMENVPGILSAQNGEYVKAIQEFFAENGYRTECKV 527

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            + A  +GV Q RKR F+   +  D +  +P+P + F+ P       D++Q          
Sbjct: 528  INAADYGVPQLRKR-FLLIGTKTDLVIPFPKPKY-FSTP-------DSWQ---------- 568

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             P+R  TV + I DL                DP S+          +L+ H+  +     
Sbjct: 569  LPYR--TVGEVITDL---------------MDPSSY---------DLLSHHVPAKHAPTI 602

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R   I +    D   LP+    L TG            T K    +  ++ RLD +  
Sbjct: 603  VERYSYIEEGKKLDIERLPEH---LKTGT----------KTGKPIANFSHVYKRLDRKK- 648

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
             P+S   P   G      HP  +R LTVRE AR Q FPD YQF G I ++  Q+GNA P 
Sbjct: 649  -PSSTIVP---GHNAFPVHPVLNRTLTVREAARIQTFPDHYQFVGPIINQCLQVGNAFPC 704

Query: 1539 TLAFALGRKLKEAVESK 1555
             +A   G +L+  + ++
Sbjct: 705  LVAQIFGERLRTVINNE 721



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 168/435 (38%), Gaps = 109/435 (25%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI-LRA 1179
            L  + +F G GGL  G +++G  +   A +  + A   +  N+P       +   I L  
Sbjct: 8    LNFISLFTGAGGLDIGFKEAG-HNCLLASDIMKEAELTYSYNYPSVPFFREDIRQIPLDK 66

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
              +  GD E                            VD I GGPPCQGFS M   N S 
Sbjct: 67   FKKVIGDKE----------------------------VDVIIGGPPCQGFSNMGNKNSSD 98

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                  E    ++S  + F+P+ FL ENV+  ++  +G+ F   + S L +GY + + ++
Sbjct: 99   PRNYLFE---NYVSLVNTFKPKCFLFENVKGLLTMFEGRFFENIVNSFLSIGYSISYTLI 155

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            ++  +GV Q R+R F+           +P+P              D   Y  ++S  N  
Sbjct: 156  DSSLYGVPQKRERVFLMGTRLQHKKFNFPKP--------------DVKPYGFLKSFKN-- 199

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH--ISKEMNEL 1417
                  V D I DL    N       E+ N               ++ +H  I K   EL
Sbjct: 200  ------VGDAINDLANFEN------EEFPNH--------------IILNHSDIVKRRYEL 233

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
             +    K+PK                         P  LP   +R N +   + RLD + 
Sbjct: 234  -IPEGGKLPK-------------------------PEDLPEDIRRKN-FGNTYTRLDRK- 265

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
                +I+     G   +  HP   R LT RE AR Q FPD++ F G  + +   +GNAVP
Sbjct: 266  ----TISSTIVPGNNALPVHPYLARSLTPREAARIQTFPDNFIFKGDRRSQCILVGNAVP 321

Query: 1538 PTLAFALGRKLKEAV 1552
            P LA  L   +++ +
Sbjct: 322  PLLAAKLADSIEKFI 336


>gi|288958310|ref|YP_003448651.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
 gi|288910618|dbj|BAI72107.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
          Length = 375

 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 175/435 (40%), Gaps = 114/435 (26%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F G GGL+ G  Q+G     +AI+ +  A E ++LN  + ++               
Sbjct: 33   IDLFCGAGGLTLGFVQAGFRPV-FAIDDDRHAAETYRLNFGDHII--------------- 76

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD     S   A                     D + GGPPCQGFS + +      ++ 
Sbjct: 77   CGDIRQIESFPAA---------------------DVVIGGPPCQGFSRLGKQTHGLPTEK 115

Query: 1244 QCE---MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
              E   +   ++   +  QP+ F++ENV +F      +  +   A L   GYQ+   +L 
Sbjct: 116  SYEGNGLWAEYMRCVEQAQPKLFVVENVPDFFKHFAWEGIQREAARL---GYQLAHAVLH 172

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  FGV Q R+RA I  +      P  P P H     + K+ L     +           
Sbjct: 173  AADFGVPQKRQRAIIIGSRVGK--PRLPMPTH-----QQKLNLLGQPVWR---------- 215

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                TVRD IGDLP          +E  N                +  H  +  +EL++ 
Sbjct: 216  ----TVRDAIGDLP----------LEPNN----------------INRHDFRNASELSIR 245

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG--- 1477
            R + IP  PG +  ++PDE ++L           C  N   +      L GRL W+    
Sbjct: 246  RYKAIP--PGGNRKNIPDE-IQLP----------CWKNKNPKSGGSADLMGRLLWDQPAL 292

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
               T    P+     G   HP   R +TVRE AR Q FPD ++F GS     +QIGNAVP
Sbjct: 293  TIRTEFLKPE----KGRYLHPQAHRSITVREGARLQTFPDDFKFAGSNYQAAKQIGNAVP 348

Query: 1538 PTLAFALGRKLKEAV 1552
              LA    R++ E V
Sbjct: 349  VLLA----RRIAETV 359


>gi|317057160|ref|YP_004105627.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449429|gb|ADU22993.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 407

 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 186/437 (42%), Gaps = 102/437 (23%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            ++   +T+++FAG GGL+ G++++G   T   +E ++ A +  + N PE  ++ ++   I
Sbjct: 70   EQRTFSTIELFAGAGGLALGVEKAGFI-TLGLVEVDKDASDTLRRNRPEWRVINDDIANI 128

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
                   C D +D     +                   G++D ++GG PCQ FS   +  
Sbjct: 129  ------SCLDLQDYFGLKK-------------------GELDLLSGGAPCQSFSYAGK-- 161

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
            +      +  +   +  F +  QP+ FL ENVR  ++ +KG+T++  L      GY ++ 
Sbjct: 162  RLGLEDARGTLFYHYAKFLEQLQPKMFLFENVRGLLTHDKGRTYKTILDIFESTGYTIQK 221

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             +L A  +GV+Q R+R        + T     +    F  P         ++Y  V    
Sbjct: 222  KVLNAWDYGVAQKRERLITIGIRNNLT----DKISFSFPTP---------HEYKPV---- 264

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
                     +RD + D P           + +  P S ++++I                 
Sbjct: 265  ---------LRDVLLDCP-----------KSEGTPYSEYKRKI----------------- 287

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
                  + +P  PG  W D+P++  K       + +  C      R     G+  RL  +
Sbjct: 288  -----FELVP--PGGYWRDIPEDIAK-------EYMKSCWYMEGGR----TGILRRLSLD 329

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T P    +   C HP + R  T+RE AR Q FPD +QF GSI  +++Q+GNAV
Sbjct: 330  EPSLTVLTSPS-QKQTDRC-HPLEPRPFTIRENARCQSFPDEWQFCGSIGSQYKQVGNAV 387

Query: 1537 PPTLAFALGRKLKEAVE 1553
            P  LA  + ++++ A+E
Sbjct: 388  PVNLAMDIAKQIRIALE 404


>gi|414079463|ref|YP_007000887.1| DNA 5-cytosine methylase [Anabaena sp. 90]
 gi|413972742|gb|AFW96830.1| DNA 5-cytosine methylase [Anabaena sp. 90]
          Length = 415

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 193/445 (43%), Gaps = 88/445 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      ++E +       K N P          VI ++V E 
Sbjct: 9    VDLFAGAGGMTLGFEQAGFDILA-SVEIDPIHCAIHKFNFP-------FWTVICKSVEET 60

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             G  ++  ++S+ A                  ++D + GGPPCQGFS + +    ++   
Sbjct: 61   TG--KEIRNSSQIAN----------------QEIDVVFGGPPCQGFSLIGK---RSFDDP 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            +  ++  F+      QP++F+LENV+        +     +    E GYQ+   + +L A
Sbjct: 100  RNSLVFHFIRLVVELQPKFFVLENVKGMTVGKHKEFIAEIINQFTESGYQIDANYQVLNA 159

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q+R+R F+  A     LP++PE          KI   +                
Sbjct: 160  ANYGVPQNRERLFLLGAREDLELPKYPE----------KITFPNQ--------------- 194

Query: 1362 RAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
             + TV D + DLPA+ N          + E+ N   S + K++        ++  K   +
Sbjct: 195  TSPTVWDALQDLPAIENYPELYQQDWILTEFSNP--SNYAKKLHNLEIAKNNYAYKRQYD 252

Query: 1417 LNL----IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
            L L    +R +  P+   + +   P  K++ S  +   L P  L NT +         G 
Sbjct: 253  LTLLTSSLRSKHSPES-RSRFASTPHGKIE-SISRFHKLDPDGLCNTLRA--------GT 302

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
               +G F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQI
Sbjct: 303  PSNKGAF----TSPRPI-------HPFIPRCITVREAARLHSYPDWFRFHPTKWHGFRQI 351

Query: 1533 GNAVPPTLAFALGRKLKEAVESKRS 1557
            GN+VPP LA A+  ++ + ++ K S
Sbjct: 352  GNSVPPLLAQAVAEEIIKVLDIKSS 376


>gi|453054457|gb|EMF01909.1| DNA-cytosine methyltransferase [Streptomyces mobaraensis NBRC 13819 =
            DSM 40847]
          Length = 655

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 189/440 (42%), Gaps = 98/440 (22%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS GLQ++G + T  A++++E A E    N P   + ++  N   R  +E
Sbjct: 44   AVDLFSGAGGLSLGLQRAGWT-TAAAVDFDERALETHAANFPGMSLHMDLGNPAERDRLE 102

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR-------- 1234
            +  +                         P  G++D + GGPPCQ FS   R        
Sbjct: 103  ELLE-------------------------PAKGEIDLVAGGPPCQPFSRAGRSKIRHLVE 137

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
             +      ++ E+  A+L      +PR  L+ENV +    +     R+    L E+GY  
Sbjct: 138  HHGRDPHDLRKELWSAYLDVIKRIRPRAVLMENVPDMGLGDDFFVVRVIEQQLEELGYAT 197

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
            +  +++A  +GV Q RKR  + A +  +   EW + +                       
Sbjct: 198  QVRLVDAWRYGVPQHRKRLILLARNDIERF-EWQQEV----------------------- 233

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ------NDPVSWFQK--RIRGNMAVL 1406
                A     T+R  IGDLP +    ++ + E +      ++ +S F +  R R    V+
Sbjct: 234  ----AEDERTTLRHAIGDLPPLTVVPTERVGEREMAYGTPSEDLSDFAREMRKRAKREVV 289

Query: 1407 TDHISKEMNELNLIRCQKIPKRPGADW--HDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
             DH+++ +             RP  DW   D  D     S     D+ P     +A+   
Sbjct: 290  FDHMTRRV-------------RPD-DWVIFDSMDSDTLYS-----DIDPELQRYSAE--- 327

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHG 1523
             +   + +LDW+ +   SIT    + K G  + HPDQ+R LTVRE AR Q FPD ++F G
Sbjct: 328  HFTDKYKKLDWD-DLSRSIT--AHIAKDGYWYIHPDQNRTLTVREAARVQTFPDRFRFAG 384

Query: 1524 SIQHKHRQIGNAVPPTLAFA 1543
            +     RQIGNAVPP L  A
Sbjct: 385  TRSDAFRQIGNAVPPLLGKA 404


>gi|83859006|ref|ZP_00952527.1| C-5 cytosine-specific DNA methylase [Oceanicaulis sp. HTCC2633]
 gi|83852453|gb|EAP90306.1| C-5 cytosine-specific DNA methylase [Oceanicaulis alexandrii
            HTCC2633]
          Length = 363

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 179/447 (40%), Gaps = 110/447 (24%)

Query: 1119 NHLAT------LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINN 1172
            +HL T      +D+F G GGLS G    G       I+ +E    AF+ N        N+
Sbjct: 14   HHLTTKPSATVVDLFCGAGGLSHGFHSEGFDIVG-GIDTDEACRYAFEHN--------ND 64

Query: 1173 CNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGM 1232
               I R V                    A L    I  L +PG+   + G  PCQ FS  
Sbjct: 65   APFIRRDV--------------------AKLTGPEIEGLFIPGKRRVLVGCAPCQPFSTY 104

Query: 1233 NRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
            N+ N       + +++  F    D  +P    +ENV   ++F +G  FR  +  L   GY
Sbjct: 105  NQKNDDP----KWKLLSYFGDLIDQVRPDVVSMENVPRLLNFKEGAVFRQFVGRLEAAGY 160

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
             V + +L    FG++Q+R R  + A+         P P H            D       
Sbjct: 161  HVVWKVLYGPDFGLAQTRHRLVLLASQVGPI--ALPVPTH-----------ED------- 200

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                     R  TVRD IG LP +G+G +  +     DP+                H S 
Sbjct: 201  ---------RPRTVRDEIGALPPLGHGEANDV-----DPL----------------HCSS 230

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             ++E+N+ R      +PG  W D  D           DLI  C  + A+    +  ++GR
Sbjct: 231  RLSEINVRRISA--SKPGGTWRDWDD-----------DLIAKC--HKAETGRGYSSVYGR 275

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS---IQHKH 1529
            + W+   PT IT        G   HP+Q R L++RE A  QGFP  Y+F      IQ K 
Sbjct: 276  MKWDEPSPT-ITTQFFGFGNGRFGHPEQPRALSLREGAMLQGFPRDYEFVPPGERIQFKA 334

Query: 1530 --RQIGNAVPPTLAFALGRKLKEAVES 1554
              R IGNAVP  LA A+ R ++  +E+
Sbjct: 335  VGRLIGNAVPVKLAAAIARAVRTHLEN 361


>gi|379754157|ref|YP_005342829.1| DNA-cytosine methyltransferase [Mycobacterium intracellulare MOTT-02]
 gi|378804373|gb|AFC48508.1| DNA-cytosine methyltransferase [Mycobacterium intracellulare MOTT-02]
          Length = 669

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 192/451 (42%), Gaps = 101/451 (22%)

Query: 1125 DIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184
            D F+G GGLS GL+Q+G      A    EP       +H   L +  + ++   AV+ K 
Sbjct: 56   DFFSGAGGLSLGLEQAGYKVVMSA--DHEPFANRTHAHHFGGLSV--DWDLSDPAVVAKV 111

Query: 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS----GMNRFN-QST 1239
            GD                        L    +VD + GGPPCQ FS     M R+  QS 
Sbjct: 112  GD------------------------LMREAEVDLVAGGPPCQPFSRAGRSMIRYRVQSG 147

Query: 1240 WSKVQCE---MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
                  E   +  +FL   D  +P+  L+ENV +     +    R  +  L +M Y V  
Sbjct: 148  LRDPHDERRDLWRSFLEIVDRARPKAVLMENVPDMALDREMFILRSMVEELEQMNYSVEE 207

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             +++A  +GV Q R+R  I  A   +T   WPE               D ++        
Sbjct: 208  RVIDAWRYGVPQFRQR-LILVALQDNTEFRWPE--------------EDPHK-------- 244

Query: 1357 NGAPFRAMTVRDTIGDLPAV-----GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                   +TV + IGDLP V       G      +Y   PV+ FQ+ +R  +A+   H  
Sbjct: 245  -------VTVWNAIGDLPEVEGGWRPEGGQHGWADYSG-PVTQFQREMRAGVALADSH-- 294

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG--- 1468
            K  + +          RP  D      E +  +T +  DL        +++H +++G   
Sbjct: 295  KVFDHIT---------RPVRDDDREAFESMTHAT-KYTDL--------SEQHQRYRGDIF 336

Query: 1469 --LFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGSI 1525
               + RL+ E +   +IT    + K G  + HP Q R LTVRE AR Q FPD ++F G  
Sbjct: 337  DDKYNRLN-ENDLSRTIT--AHIAKDGYWYIHPRQSRTLTVREAARLQTFPDDFRFDGPP 393

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
                RQIGNAVPP L F +GR ++E++++ R
Sbjct: 394  SAAFRQIGNAVPPRLGFLIGRAIRESLDNPR 424


>gi|409197559|ref|ZP_11226222.1| DNA-cytosine methyltransferase [Marinilabilia salmonicolor JCM 21150]
          Length = 416

 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 188/458 (41%), Gaps = 73/458 (15%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP-ESLMLINNCNVILRAVME 1182
            +D+F+G GGLSEG  ++G       +E ++ A            L    N N  L  +  
Sbjct: 4    IDLFSGAGGLSEGFIRAGFKPVA-HVEIDKAACNTMITRAAYHYLKRTGNFNSYLDYIQN 62

Query: 1183 KCGDAE-DCVSTSEAAELAASL---DEN------VINNLPLPGQVDFINGGPPCQGFS-- 1230
            K    E   +  ++  E   +L   DEN       I++L     +DFI GGPPCQ +S  
Sbjct: 63   KITRTELYSLIPNKERESVINLSIGDENNEIIFDKIDSLKGDKSIDFIIGGPPCQAYSIV 122

Query: 1231 GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLASL 1287
            G +R         +  +   +  F +Y+QPRYF+ ENV    S    N      +     
Sbjct: 123  GRSRDGNRMQGDSRNYLFREYAKFLEYYQPRYFVFENVIGLKSAKTKNGDSYLEMMRELF 182

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
            LE GY   + ILEA  FGV Q+RKR  I     +     +P                   
Sbjct: 183  LEKGYYTEYKILEAKDFGVLQNRKR-IILIGKKNGKEGFYP------------------- 222

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGAS---KTIMEYQNDPVSWFQKRIRGNMA 1404
            ++  V+S         +TV +   DLP++  GA    KT  +  N     F+  IR  + 
Sbjct: 223  KFEKVQS--------GVTVSEIFKDLPSLRAGAGEYYKTNYKPYNG-TYLFESHIRNGLD 273

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
              T HIS+   E +    + I K     W    D + +L+   +        P   + H 
Sbjct: 274  FTTQHISRPNTEQD----KGIYKLAVEKWE---DGQQRLNYNDI--------PLHWQTHK 318

Query: 1465 QWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDSYQ 1520
              K    R      + P S T    + K G  + HPD  Q+R LT RE AR Q FPD + 
Sbjct: 319  NTKSFVDRFKVVAADLPYSQTVVAHICKDGHYYIHPDKSQNRSLTPREAARLQTFPDDFF 378

Query: 1521 FHG-----SIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            F G     S    ++QIGNAVPP +A  +  KLKE  E
Sbjct: 379  FEGISEKPSRTAAYKQIGNAVPPLMAEKIANKLKEIYE 416


>gi|257386518|ref|YP_003176291.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM 12286]
 gi|257168825|gb|ACV46584.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM 12286]
          Length = 452

 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 201/488 (41%), Gaps = 105/488 (21%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            E  L  +D+F G GGLS+GL  +G   T W I++EE     ++ NH        +C + +
Sbjct: 3    EERLTAIDLFCGAGGLSQGLHDAGF-ETLWGIDHEENTKPTYEANH--------DCEMTV 53

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRF 1235
              + E+           E  +L   L+E         G++D + GGPPC  FS  G ++ 
Sbjct: 54   GDIREE-----------EPPDLG--LEE---------GELDLVAGGPPCPTFSLVGRSKI 91

Query: 1236 NQSTWSKVQCE----MILAFLSFADYFQPRYFLLENVRNFVSFNK--GQTFRLTL----- 1284
            N       Q +    +   FL F D++QP+ FL+ENV   +S     G+    T+     
Sbjct: 92   NSIEGRDNQSDDRHLLYEDFLRFVDHYQPKAFLMENVEGMLSAENEDGKPVVDTIKEQMR 151

Query: 1285 -----ASL-LEMGYQVRFGILEAGAFGVSQSRKRAF-----IWAASPHDTLPEWPEPMHV 1333
                 A L L++ Y VR  +L++  +G+ Q RKR F     I   +P  T  E       
Sbjct: 152  GEREVADLDLDLNYSVRVQLLDSADYGIPQHRKRLFFIGNRIGEENPDMTEWETHRKPKN 211

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANG----------APFRA--------MTVRDTIGDLPA 1375
                ++K     + +    +ST +G            FR          TV D I DLP 
Sbjct: 212  EEEKKIKYKEDPSERSEEDQSTLHGFVDEDGTEEFPAFRKNRQSKEPWNTVADGILDLPP 271

Query: 1376 V---GNGASKTIMEYQNDPVSWFQKRIRGNMA--------VLTDHISKEMNELNLIRCQK 1424
            V   G+       EY+  PVS FQ   R N++         L +H  +  N  +L   + 
Sbjct: 272  VSPSGDTPPTKAEEYEIGPVSEFQYWAR-NLSEEQDWEDQPLLNHECRGHNMRDLTLYKL 330

Query: 1425 IPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
            + +       D+P+E     T           P+  K+ N  +            P +  
Sbjct: 331  LGEGTSYIIGDIPEEHQPYRTD--------IFPDKLKKQNPKE------------PATTI 370

Query: 1485 DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFAL 1544
                     M  HP++ R +TVRE AR Q F D+++F  S  H  +Q+GNAVPP LA AL
Sbjct: 371  VAHLYKDGHMFIHPNEARSITVREAARLQSFKDTFEFPVSRTHAFKQVGNAVPPLLAQAL 430

Query: 1545 GRKLKEAV 1552
               ++  +
Sbjct: 431  ATAIRTEI 438


>gi|215260081|gb|ACJ64503.1| DNA-(cytosine-5)-methyltransferase [Sebastiscus marmoratus]
          Length = 211

 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI-MLSDNYQY 1349
            G  V F      +       +RA I AA+P + LP +PEP+HVFA     + ++ D  +Y
Sbjct: 2    GLSVHFWCPSGWSVRRCPDPRRAIILAAAPGEKLPRYPEPLHVFAPRACSLNVVVDEKKY 61

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN--MAVLT 1407
             +  +  NG  +R +TVRDT+ DLP + NGAS   + Y  +P SWFQ++IRG     +L 
Sbjct: 62   VSNVTRGNGGIYRTITVRDTMSDLPEIRNGASGLEISYNGEPQSWFQRQIRGTQYQPILR 121

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            DHI K+M+ L   R + IP  PG+DW DLP+ +V++  G + 
Sbjct: 122  DHICKDMSALVEGRMRHIPLAPGSDWRDLPNLEVRVKDGTMT 163


>gi|403161899|ref|XP_003322205.2| hypothetical protein PGTG_03742 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375171974|gb|EFP77786.2| hypothetical protein PGTG_03742 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1210

 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 158/692 (22%), Positives = 271/692 (39%), Gaps = 172/692 (24%)

Query: 784  YFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDI 843
            + +  +FE     K FHG  ++   H+ +G +    E+ L +QC ++EL+      +  I
Sbjct: 174  FLIRALFER-NQLKYFHGTWLEEAQHSFVGASGEPLELLLVDQCYEIELR-----FITGI 227

Query: 844  RSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFIL-------P 896
              V W   ++ +    D                  YYC+  + P  G+F  L       P
Sbjct: 228  EKVVWIAANKTEPPPID-----------------SYYCRFHWKPNEGSFLDLPCVRKPNP 270

Query: 897  VDSMGLGVGSCHACGTKESEKEKETFKVHSKTSF------------VYGTAEYFVHDYVY 944
             + +      C  C +   E E  T   +                 + G   Y ++D+V 
Sbjct: 271  PNPIKHPKSLCSTCVSVPREIEWLTDATNGHILLGKTDQYELLGFTLRGQETYRLNDFVR 330

Query: 945  ISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEII----------------VPKEP--- 985
            ++      D +             KP V+ Q++EI                  P  P   
Sbjct: 331  VA------DTSPS-----------KPQVIGQIVEICGVRANWNADKTINLDDTPFRPPAK 373

Query: 986  ---KRAEVKSTQV-KVRRFFRPDDISAEK--AYCSDIREVYYSEETHLIFVEA-IAGKCE 1038
               + A +K   V  +R++ R      EK     +D   ++ + +  L+ V++ + GKCE
Sbjct: 374  VYSRIASLKHKPVITIRKYQRKPWFQTEKDSRKFADDHRLWMTNQEQLVDVKSQLEGKCE 433

Query: 1039 V-----------------RKKNDIPACNAPAIFQHI--------FFCEH--LHDP-SKGS 1070
            +                 R+ ++    N    F  I        +FC    + D   K  
Sbjct: 434  IVHLFKDKTRQFVTVGSRREVSEESIINRDNCFYSILPTRKQAKYFCSVPIIDDGWEKAI 493

Query: 1071 LKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGC 1130
            + Q P  +K+ + S                 +G    ++ K  G  +  HL   ++F G 
Sbjct: 494  ISQEPEWVKIEHESS----------------KGNQYADLVKNYGCGRIRHL---ELFGGI 534

Query: 1131 GGLSEGLQQSGISST--KWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME-KCGDA 1187
            G +S  L + G++S      I++  PA +    N P S ++  + N +L  ++  K    
Sbjct: 535  GSMSVALIELGLASQDETMFIDFSIPACQTLSTNFPRSTIICADVNEVLALMINGKTESG 594

Query: 1188 EDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK-VQCE 1246
            +D +      ++        +N LP PG  D I  G PC   S +N   ++  SK   C 
Sbjct: 595  QDFLVDQRTGKVIR------VNELPRPGDFDLITAGFPCGSHSTLNVLRKANDSKNALCA 648

Query: 1247 MILAFLSFADYFQPRYFLLENV-------RNFVS------FNKGQTFRLTLASLLEMGYQ 1293
              L+F++   Y +P Y   ENV        +F++       NK    R+   +L+ +GYQ
Sbjct: 649  TALSFIA---YLKPDYLFFENVWCAGLLKTSFINPGNDSVLNKA-FLRIINGALISLGYQ 704

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHD-TLPEWPEPMHVFAAPELKIML------SDN 1346
            V+FG+L+A  FG  Q+R+R  I+A + H  T  + PEP H +    L I+L      SD+
Sbjct: 705  VQFGVLQAAQFGSPQARRR-IIFAGTRHGLTAIKLPEPTHHYPDEGLAILLPTNDEKSDH 763

Query: 1347 YQYSAVRS----TANGAPFRAMTVRDTIGDLP 1374
              +  VR+     ++GA  +A+TV D I DLP
Sbjct: 764  NGHRLVRADYRKCSSGA-LKAITVHDAISDLP 794



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 24/141 (17%)

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
            H++   +     R   IP +P AD   LP + ++L              NT +  + + G
Sbjct: 928  HVTPRFSAKVTERICNIPLKPNADHRHLP-KPLRLKNL-----------NTCRNPHDFDG 975

Query: 1469 LFGRLDWEGNFPTSIT--DPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI- 1525
             +GRL ++G F T IT   P    K G   HP+Q R L++ E  R+QGFPD ++   +  
Sbjct: 976  NYGRLGFQGQFNTIITKMHPHNQNKCGAVLHPNQYRTLSLLEAQRAQGFPDRFKLEPAAT 1035

Query: 1526 ---------QHKHRQIGNAVP 1537
                     Q   + IGN++P
Sbjct: 1036 KGKMDETVNQQLFKLIGNSIP 1056


>gi|399025008|ref|ZP_10727026.1| DNA-methyltransferase Dcm [Chryseobacterium sp. CF314]
 gi|398079109|gb|EJL69981.1| DNA-methyltransferase Dcm [Chryseobacterium sp. CF314]
          Length = 413

 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 197/458 (43%), Gaps = 79/458 (17%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N+L  +D+F+GCGGLS GL  S      +AIE    A +  + N      LIN       
Sbjct: 9    NNLNYIDLFSGCGGLSLGLHNSNWQGV-FAIEKNSDAFKTLEYN------LINK------ 55

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
               +K  D  + ++ S A ++   +  +  +   L GQ++ I GGPPCQGFS   R N+S
Sbjct: 56   ---KKHFDWPNWLTKS-AHDINEVIKNHSSDLKNLRGQINLIAGGPPCQGFSMAGRRNES 111

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNF-VSFNKGQ-----TFRLTLASLLEMGY 1292
                 + E+I +++ F D  QP     ENVR F + F K +        L L SL ++GY
Sbjct: 112  D---ERNELIKSYIQFVDLVQPDLIFFENVRGFTMEFKKNKEKGIAYSELVLKSLRDLGY 168

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
             V+  ++    +GV Q R R FI             E ++ F +      L  N +YS +
Sbjct: 169  YVQGKLVNFSEYGVPQKRTR-FILIGIKCSKNNASQEMVNSFFSE-----LEKN-KYSFL 221

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME--YQND----PVSWFQKRIRGNMAVL 1406
            +S      F   TV D I DL    NG  ++I    Y++     PVS +QK +R N+   
Sbjct: 222  KSKK--LKF-INTVEDAISDL-VQSNGIVESIDSSGYKSSKYGQPVSKYQKYLRKNITNK 277

Query: 1407 T--DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
            T   H   +  E  + + QKI         DL  ++  L     + L          R N
Sbjct: 278  TPDSHRFAKHQETTIKKFQKIL--------DLTKDRRNLDITNEIRL----------RFN 319

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS 1524
              K     L  +   PT  T P          H  + RILTVRE AR Q FPD Y+F G 
Sbjct: 320  IKKHTIIPLSEKDCSPTITTLPDDY------IHYKEPRILTVREYARLQSFPDWYEFKGK 373

Query: 1525 IQH----------KHRQIGNAVPPTLAFALGRKLKEAV 1552
                         ++ QIGNA+PP  A   G  L+  +
Sbjct: 374  YTTGGKLRKKEVPRYSQIGNAIPPLFAEQAGIILRNLL 411


>gi|452840104|gb|EME42042.1| hypothetical protein DOTSEDRAFT_72966 [Dothistroma septosporum NZE10]
          Length = 1172

 Score =  120 bits (300), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 195/451 (43%), Gaps = 76/451 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  + IF G G    GL++ G    ++A+++ E A  + + N       + N +     V
Sbjct: 676  LKGMGIFCGGGTFDRGLEEGGGIDFRYAVDWAEHALHSHRAN-------VANPD----RV 724

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                G   DC        LA ++  N   ++ LPGQV  I+ G PC GFS +     S  
Sbjct: 725  TYFLGSVNDC--------LADAMRGN--RHVALPGQVQLISAGSPCPGFSRLQTNMLSDD 774

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVS---FNKGQ-TFRLTLASLLEMGYQVRF 1296
            S+    M+ + ++F D++ P YF+LENV +  S    NK +  F   +A+L+ +GYQV+ 
Sbjct: 775  SRRNASMVASVVAFVDFYVPEYFVLENVVSMTSGMGRNKDENVFSQIIAALVGLGYQVQQ 834

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             +++A ++G SQ R R FI A++    LP   +P H  A P      +D     A+  + 
Sbjct: 835  FLMDAWSYGSSQQRSRVFIIASAA--GLPPLKQPQHSHAHP------TDEPVGRALGKST 886

Query: 1357 NG----------APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVL 1406
            NG           PF  +  R    DLP + +   +  + +                   
Sbjct: 887  NGLSFGNRRNCFTPFEHVNPRAATFDLPNLDDAQVQLCVTH------------------- 927

Query: 1407 TDHISKEMNE--LNLIRCQKIPKRPGADWHDLPDEKVK---LSTGQVVDLIPWCLPNTAK 1461
             DH +  +NE  +N  R   +P RP    H +   + K   L  G+  +    C      
Sbjct: 928  PDHRTA-INEPAVNRTRMAVVPTRP----HGMGLMQAKRKGLLRGEPSN---HCDKVNHI 979

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
            R      ++ R+  +  FPT IT      G  G   H DQ R LTV E  R+QG+ D   
Sbjct: 980  RRMATSRMYSRVYPKFLFPTIITRMAVSDGINGRWLHWDQPRALTVMEARRAQGYLDHEV 1039

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
              G+   + + +GN+V   +A  LG  L+E+
Sbjct: 1040 LVGNAAQQLKIVGNSVDRKVALVLGLLLRES 1070


>gi|218441171|ref|YP_002379500.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173899|gb|ACK72632.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 415

 Score =  120 bits (300), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 189/444 (42%), Gaps = 97/444 (21%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG+S G +Q+G      A+E        ++ N P          +I R+V + 
Sbjct: 13   VDLFAGAGGMSLGFEQAGFDVLA-AVEINPIHCATYEYNFP-------FWTIICRSVADI 64

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             G+        E  +L+A  ++          ++D + GGPPCQGFS M +         
Sbjct: 65   RGE--------EIRQLSALKNQ----------EIDVVFGGPPCQGFSLMGK---RLIDDP 103

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            + E+I  FL       P+YF++ENV         Q     +    + GY++   + IL A
Sbjct: 104  RNELIFHFLRLVLELNPKYFVMENVPGLALGQHKQFLDRIILEFNQKGYKIDNNYQILNA 163

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q+RKR F+     +    ++PE             +SD                
Sbjct: 164  ANYGVPQNRKRLFLLGGKKNLPPLKYPE------------AISD---------------- 195

Query: 1362 RAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            +  TV + I DLP V +          I+EY +   S + +++R N A+ TD+  +   +
Sbjct: 196  KKTTVWEAIQDLPEVNDYPDLETRDWVIVEYGDK--SEYAQKLRDNYALKTDYAYRREYD 253

Query: 1417 LNL----IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR---HNQWKGL 1469
             N     +R +  P+     +   P  KV+        L P  L NT +    HN  KG 
Sbjct: 254  FNRLTSSLRTKHTPQS-IERFAKTPRGKVE-KISHFYRLSPDGLCNTLRAGTDHN--KGA 309

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            +             T P+P+       HP   R +TVRE AR   +PD ++FH +  H  
Sbjct: 310  Y-------------TSPRPI-------HPFTPRCITVREAARLHSYPDWFRFHVTKWHGF 349

Query: 1530 RQIGNAVPPTLAFALGRKLKEAVE 1553
            RQ+GN+VPP LA A+ +++   +E
Sbjct: 350  RQVGNSVPPLLAKAIAQEIINTLE 373


>gi|146309050|ref|YP_001189515.1| DNA-cytosine methyltransferase [Pseudomonas mendocina ymp]
 gi|145577251|gb|ABP86783.1| DNA-cytosine methyltransferase [Pseudomonas mendocina ymp]
          Length = 365

 Score =  120 bits (300), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 179/448 (39%), Gaps = 117/448 (26%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  LD+F+GCGGL+ G +Q+G  +T+ A++ +     +F LN P    L  N +V     
Sbjct: 2    LTLLDLFSGCGGLTLGAKQAGF-TTELAVDIDPILSSSFGLNFPSVPFL--NADV----- 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                                 +L  + +  L LP  VD + GGPPCQ FSGM R      
Sbjct: 54   --------------------TTLTSDRLKAL-LPSGVDGVIGGPPCQAFSGMGR---GLA 89

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  ++  F       +P +F++ENV   V           +ASL      V   +L+
Sbjct: 90   DDPRRSLLGEFFRIVATVKPAFFMMENVPGLVFPANRPVLEEAIASLGGKWQIVGPVVLD 149

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY-QYSAVRSTANGA 1359
            A  FG    R+R F++                 F    +++   +N  Q  A+R      
Sbjct: 150  ASDFGAPTKRRRVFVFG----------------FDKQRMRVPSLENLTQSDALR------ 187

Query: 1360 PFRAMTVRDTIGDLPAV----GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                + V + IGDL A     GN     + +Y     S + +++R    V T H   E  
Sbjct: 188  ----VNVHEAIGDLSASRAVRGN---PNLWKYGPRKASAYAQKLRAQSGVFTGHQLTEHR 240

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
               + R Q +P+  G D    P  K K                             RL W
Sbjct: 241  AETVERFQSVPQG-GVD----PVGKYK-----------------------------RLAW 266

Query: 1476 EGNFPT----------SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSI 1525
            +G  PT          S    +P+       HP ++R++T RECAR QGFPD + FH ++
Sbjct: 267  DGLCPTLRAGTGSDRGSYQAVRPL-------HPVENRVITPRECARLQGFPDDFIFHPTV 319

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
             H  R IGN+V P +A AL   ++  +E
Sbjct: 320  WHSCRMIGNSVSPIIAAALLSNIRAYLE 347


>gi|257058000|ref|YP_003135888.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256588166|gb|ACU99052.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 423

 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 175/437 (40%), Gaps = 117/437 (26%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            +SQ+  L+ +++FAGCGG++ GL+ +G+ +                    E L+ I+   
Sbjct: 67   SSQKIELSVIELFAGCGGMALGLENAGLKT--------------------ELLVEID--- 103

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASL---DENVINNLPLPGQVDFINGGPPCQGFSG 1231
                          DCV+T +       +   D   I+     G++D + GG PCQ FS 
Sbjct: 104  -------------RDCVNTLQKNRPYWPIIQEDVTKIDFRSYQGKIDIVLGGFPCQAFSY 150

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
              +     +   +  +   F       QP+  L ENVR  +S  +G+T  + L SL E+G
Sbjct: 151  AGK--GKGFEDTRGTLFFEFARCLAEVQPKIALAENVRGLLSHQQGKTLSIMLESLEELG 208

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSA 1351
            Y+  + ++ A    V Q R+R  I A      +P       +F  P+       NY    
Sbjct: 209  YKPSYQVVSAQFLDVPQKRERVVIIAVRNDLAIPA------LFPTPK-------NY---- 251

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                        +++R+ + + P                                 D + 
Sbjct: 252  -----------TISLREALKNCP---------------------------------DSMG 267

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
             E NE      + +P  PG +W +LP E  K             + N+  +     G   
Sbjct: 268  VEYNERKKAIMELVP--PGGNWRNLPLEVQKKY-----------MKNSFLKGGGRTGFAK 314

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL W+    T    P    +   C HPD+ R LTVRE AR Q FPD ++F GS+  +++Q
Sbjct: 315  RLSWDEPCLTITCSP-AQTQTERC-HPDETRPLTVREYARVQTFPDEWEFTGSLTSQYKQ 372

Query: 1532 IGNAVPPTLAFALGRKL 1548
            IGNAVP  +++ LGR L
Sbjct: 373  IGNAVPVNMSYHLGRGL 389


>gi|323356693|ref|YP_004223089.1| site-specific DNA methylase [Microbacterium testaceum StLB037]
 gi|323273064|dbj|BAJ73209.1| site-specific DNA methylase [Microbacterium testaceum StLB037]
          Length = 360

 Score =  119 bits (299), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 183/449 (40%), Gaps = 103/449 (22%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            +S    +A +D+F G GGLS GL+Q+GI      I+ + PA       +P         N
Sbjct: 2    SSPSPTIAAIDLFCGAGGLSLGLKQAGIDVVA-GIDLD-PA-----CQYP------YEQN 48

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
            +  + +++  GD +         +L A   E         G++  + G  PCQ FS   R
Sbjct: 49   LKAQFILKDVGDVK-------GVDLQALWPE---------GKLRLLAGCAPCQPFSSHRR 92

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
                T  +   +++  F    +   P +  +ENV       K   F   +A L E+ Y+V
Sbjct: 93   -GADTRDEENWDLLSHFARLVEESLPEFVTMENV---TRLGKMPVFENFVAKLEELDYEV 148

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             FG L    FG+ Q R+R                          L +M S     S  + 
Sbjct: 149  DFGTLYGPEFGLPQERRR--------------------------LVLMASRKGNVSLPKG 182

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
              + + F+  TV+ TI  LP + +G S        DP                 H ++ +
Sbjct: 183  NKDKSKFK--TVKQTISRLPKLEHGES--------DPKDLL-------------HTARRL 219

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
              LNL R +     PG  W D P           V+L+  C  +T      ++  +GR+ 
Sbjct: 220  TPLNLRRMKA--SAPGGTWRDWP-----------VELLAPC--HTRSSGASFQAFYGRMT 264

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-----HGSIQHKH 1529
            W+   PT  T     G  G   HP+QDR LT+RE A  QGFP SY+F       S+Q   
Sbjct: 265  WDAPSPTITTQSFNFG-TGRFGHPEQDRSLTLREAAMLQGFPRSYRFVKGKEKPSMQAVG 323

Query: 1530 RQIGNAVPPTLAFALGRKLKEAVESKRST 1558
            R IGNAVPP    A+G    + +E++++T
Sbjct: 324  RLIGNAVPPAFGRAVGETFLKMLEAQQAT 352


>gi|62297515|sp|P52311.2|MTX2_XANOR RecName: Full=Modification methylase XorII; Short=M.XorII; AltName:
            Full=Cytosine-specific methyltransferase XorII
          Length = 424

 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 182/452 (40%), Gaps = 111/452 (24%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLS G +Q+G      A++ +     A K N P+       C  + ++V++ 
Sbjct: 7    IDLFAGAGGLSLGFEQAGFDLVA-AVDIDPIHCAAHKFNFPK-------CATVCKSVVDV 58

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD        E   +A     ++          D + GG PCQGFS + +         
Sbjct: 59   TGD--------ELRRIAGIGKRDI----------DIVIGGAPCQGFSLIGK---RALDDS 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            + +++  ++      +P+YF+ ENV+        Q  +  + +    GY V   + +L A
Sbjct: 98   RNQLVHHYVRVVMELKPKYFVFENVKGLTVGKHRQFLKEVIEAFQNGGYDVVTDYRVLNA 157

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R+R  +  A     LP +PEP                               
Sbjct: 158  ADYGVPQDRRRLILMGARKGLPLPAYPEPTG----------------------------- 188

Query: 1362 RAMTVRDTIGDLPAVGN--------------GASKTIMEY----QNDPVSWFQKRIRGNM 1403
               TV D IGD+P   +              G   T   Y    ++DP  +  +R    M
Sbjct: 189  -RTTVGDAIGDIPDAESFPELWERDWVKAKYGKPSTYAAYLRGKKDDPTDFGYRRQFDPM 247

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
             +LT  +  +  EL+  R   I           PD+   +S  + + L   C  NT +  
Sbjct: 248  -LLTGSLLTDHTELSRQRFAAI----------APDDVEPVSRFKKLALNGIC--NTLRA- 293

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
                   G     G F    T P+P+       HP   R++TVRE AR   +PD ++FH 
Sbjct: 294  -------GTASDRGAF----TSPRPI-------HPTVPRVITVREAARLHSYPDWFRFHA 335

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            +  H  RQIGN+VPP LA A+G ++ +A+  K
Sbjct: 336  TKWHGFRQIGNSVPPLLARAVGGQIMKALRKK 367


>gi|458402|gb|AAA50432.1| M-XorII [Xanthomonas oryzae]
          Length = 424

 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 183/452 (40%), Gaps = 111/452 (24%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLS G +Q+G      A++ +     A K N P+       C  + ++V++ 
Sbjct: 7    IDLFAGAGGLSLGFEQAGFDLVA-AVDIDPIHCAAHKFNFPK-------CATVCKSVVD- 57

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                   V+ SE   +A     ++          D + GG PCQGFS + +         
Sbjct: 58   -------VTRSELRRIAGIGKRDI----------DIVIGGAPCQGFSLIGK---RALDDS 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            + +++  ++      +P+YF+ ENV+        Q  +  + +    GY V   + +L A
Sbjct: 98   RNQLVHHYVRVVMELKPKYFVFENVKGLTVGKHRQFLKEVIEAFQNGGYDVVTDYRVLNA 157

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R+R  +  A     LP +PEP                               
Sbjct: 158  ADYGVPQDRRRLILMGARKGLPLPAYPEPTG----------------------------- 188

Query: 1362 RAMTVRDTIGDLPAVGN--------------GASKTIMEY----QNDPVSWFQKRIRGNM 1403
               TV D IGD+P   +              G   T   Y    ++DP  +  +R    M
Sbjct: 189  -RTTVGDAIGDIPDAESFPELWERDWVKAKYGKPSTYAAYLRGKKDDPTDFGYRRQFDPM 247

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
             +LT  +  +  EL+  R   I           PD+   +S  + + L   C  NT +  
Sbjct: 248  -LLTGSLLTDHTELSRQRFAAI----------APDDVEPVSRFKKLALNGIC--NTLRA- 293

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
                   G     G F    T P+P+       HP   R++TVRE AR   +PD ++FH 
Sbjct: 294  -------GTASDRGAF----TSPRPI-------HPTVPRVITVREAARLHSYPDWFRFHA 335

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            +  H  RQIGN+VPP LA A+G ++ +A+  K
Sbjct: 336  TKWHGFRQIGNSVPPLLARAVGGQIMKALRKK 367


>gi|18202059|sp|O52702.1|MTA1_ACEPA RecName: Full=Modification methylase ApaLI; Short=M.ApaLI; AltName:
            Full=Cytosine-specific methyltransferase ApaLI
 gi|2865599|gb|AAC97180.1| ApaLI methyltransferase [Acetobacter pasteurianus]
          Length = 429

 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 187/435 (42%), Gaps = 70/435 (16%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             + +FAG GG S G  Q+G+    +  E    A + ++ N                 V  
Sbjct: 7    VVSLFAGAGGFSSGFSQAGLKPL-FGAEINADACQTYQEN-----------------VGS 48

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C   +            +++D + I  L    +   + GGPPCQGFS     N   ++ 
Sbjct: 49   PCHQLD-----------LSTVDPSHIEMLTGGKRPFVVIGGPPCQGFSTAGPRN---FAD 94

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  +I  +L+  +   PR+ + ENV   ++   G+     +   ++MGY VR   +   
Sbjct: 95   PRNLLIFNYLNIVERLSPRWLIFENVEGLLTSGGGRDLARLVREFVDMGYSVRLQKVNLA 154

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
            A+GV Q+RKR  I          ++PE ++ F + + K               A+G P  
Sbjct: 155  AYGVPQTRKRVLIIGNRLGIDF-QFPEELYSFDSGKAK--------------KASGKPL- 198

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR-GN-MAVLTDHISKEMNELNLI 1420
            A ++ + +  L    +     +    ++PV+ F  R+R GN + V+T H+  E  E    
Sbjct: 199  APSLAEAVAGLGPAASDKDALVPYASSEPVNAFDARMRAGNRVEVVTHHVRVEAAE---- 254

Query: 1421 RCQKIPKRPGADWHDLPDE-----KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            R Q    +PG    DLP E       + +  +V D  P     T KR     G+  RL  
Sbjct: 255  RMQVELLKPGQTMKDLPPELWHESYRRRANRRVSDGTP-----TEKRGGAPSGI-KRL-- 306

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
             GN   S+T   P  +     HP + R LT+RECAR Q FPD Y++ G+     +QIGNA
Sbjct: 307  HGNL-QSLTITGPAAR--EFIHPTEHRPLTIRECARIQTFPDKYRWVGNNASVIQQIGNA 363

Query: 1536 VPPTLAFALGRKLKE 1550
            VPP  A  L + L++
Sbjct: 364  VPPLAAERLAKHLRD 378


>gi|127439|sp|P05302.1|MTD1_DESNO RecName: Full=Modification methylase DdeI; Short=M.DdeI; AltName:
            Full=Cytosine-specific methyltransferase DdeI
 gi|79418|pir||S00543 site-specific DNA-methyltransferase (cytosine-specific) (EC 2.1.1.73)
            DdeI - Desulfovibrio desulfuricans
 gi|40795|emb|CAA68505.1| DdeI methylase [Desulfovibrio vulgaris]
          Length = 415

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 184/447 (41%), Gaps = 100/447 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+FAGCGG S G + +G +S   AIE +  A + +  N+P       N +VI    
Sbjct: 1    MNIIDLFAGCGGFSHGFKMAGYNSI-LAIEKDLWASQTYSFNNP-------NVSVI---- 48

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                   ED ++T +  +L  S+ +           VD I GGPPCQGFS     +Q   
Sbjct: 49   ------TED-ITTLDPGDLKISVSD-----------VDGIIGGPPCQGFSLSGNRDQ--- 87

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF-NKGQTF--RLTLASLLEMGYQVRFG 1297
               +  + + F+ F  +F P++F++ENV   +S   K + +   +       +GY+V   
Sbjct: 88   KDPRNSLFVDFVRFVKFFSPKFFVMENVLGILSMKTKSRQYVKDIIAEEFSNVGYKVCVI 147

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            IL A  +GV QSR+R F         L +          P  K++ S+            
Sbjct: 148  ILNACDYGVPQSRQRVFFIGLKSDRPLNQQ------ILTPPSKVIESE------------ 189

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                   ++ + I DLP +  G    + +Y   P + +Q+ +R     + +H++    + 
Sbjct: 190  -----YTSLEEAISDLPVIEAGEGGEVQDYPVAPRNKYQENMRKGSTCVYNHVAMRHTQ- 243

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK-----GLFGR 1472
                              L D    +  GQ V        + ++ H+Q K      + G+
Sbjct: 244  -----------------RLVDRFAAIKFGQSVK-------HVSEEHSQRKRGDANSISGK 279

Query: 1473 LDWEGNFPTSITDPQPMGKVGM---CFHPDQDRILTVRECARSQGFPDSYQFHGSIQ--- 1526
            +  + N       P P           HP  +R  T RE AR Q FPD+Y F G      
Sbjct: 280  VFSQNNMRPYPYKPCPTVAASFQSNFIHPFYNRNFTAREGARIQSFPDTYIFQGKRTTMS 339

Query: 1527 -----HKHRQIGNAVPPTLAFALGRKL 1548
                  +++QIGNAVPP LA AL  ++
Sbjct: 340  WEKHLSQYQQIGNAVPPLLAQALAERI 366


>gi|347535129|ref|YP_004842554.1| putative type II modification methyltransferase [Flavobacterium
            branchiophilum FL-15]
 gi|345528287|emb|CCB68317.1| Probable type II modification methyltransferase [Flavobacterium
            branchiophilum FL-15]
          Length = 405

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 187/446 (41%), Gaps = 61/446 (13%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK----LNHPESLMLINNCNVILRA 1179
            +D+FAG GGLSEG  ++G +     +E  + A +  K     +H +    IN     L+ 
Sbjct: 4    IDLFAGAGGLSEGFIRNGFNPIA-HVEMNKDACDTLKTRAAFHHLKENKEINIYYDYLKG 62

Query: 1180 VMEK--------CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSG 1231
             + +            +  ++   + E    + E +   L    QVD + GGPPCQ +S 
Sbjct: 63   KISRQELWNKVPTNIIDSVINKEISTETLPFIFEKIDQELG-KNQVDLVIGGPPCQAYSV 121

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
              R  ++     +  + L ++ F   + P+ F+ ENV   +S + G        ++ E G
Sbjct: 122  AGRARKNMADDPRNHLYLHYVEFLKRYNPKMFVFENVPGILSASNGIYLDKIFEAVKEAG 181

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSA 1351
            Y++   +L A  FGV Q RKR  I           W   +  F  P  ++   +N++   
Sbjct: 182  YELEKSVLNAKNFGVLQDRKRVIIIG---------WKRELG-FKYPHFEVK-ENNFE--- 227

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASK-TIMEYQNDPVSWFQKR-IRGNMAVLTDH 1409
                          ++    DLP + +G  +  + +Y     S+ +   IR  +   T H
Sbjct: 228  -------------ILKHLFSDLPKIKSGQGEWNVSKYAKKTNSYLESTGIRNGIDFTTQH 274

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
            +S+  NE +L    +I +     W    +E  +L+  +        LP    +HN     
Sbjct: 275  VSRFNNENDL----EIYRIAVEKW---TNEGKRLNYAE--------LPTRLIKHNNTSTF 319

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDSYQFHGSIQ 1526
              R     +   S T    +   G  + HPD  Q+R +TVRE AR Q FPD Y F  S  
Sbjct: 320  SNRFQVVNHKGVSHTVVAHICADGHYYIHPDITQNRSITVREAARIQSFPDDYFFESSRT 379

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAV 1552
               +QIGNAVP  +A  + +K+KE +
Sbjct: 380  AAFKQIGNAVPVLMAEGIAKKIKEMI 405


>gi|157412795|ref|YP_001483661.1| site-specific DNA methylase [Prochlorococcus marinus str. MIT 9215]
 gi|157387370|gb|ABV50075.1| Site-specific DNA methylase [Prochlorococcus marinus str. MIT 9215]
          Length = 698

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 217/514 (42%), Gaps = 99/514 (19%)

Query: 1062 HLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHL 1121
            H   P +G   +L AH+    S   L   AA  R K K                  E + 
Sbjct: 13   HRLSPVRGPASELEAHVD-SCSFDELPEYAAKVRSKKK------------------EPYF 53

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            A +D+F+G GGLS GL                         H  +  +I  C++   ++M
Sbjct: 54   A-VDLFSGAGGLSLGL-------------------------HRANFDVILACDIRNDSIM 87

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVIN-NLPLPGQVDFINGGPPCQGFSGMNRFNQST- 1239
                    C   S   +L+     N I+  L   G++  I GGPPCQ FS   ++ +   
Sbjct: 88   THRHHFGGC---SYECDLSKRKVINEISEQLNKCGEISLIAGGPPCQPFSRNIKWRKHNE 144

Query: 1240 --------WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
                     ++ + E+  +F+S  +  +P+ FL+ENV +     + + +R  +    + G
Sbjct: 145  EVSAQHHELNEDRRELWESFISIVEQVKPKAFLMENVTDIAQTGEQEIYRSIINRAEKAG 204

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYS 1350
            Y++   ++ A  +GV Q R R FI     ++  P +WP+P                 +Y 
Sbjct: 205  YRINPKLIYAWQYGVPQLRPRLFISGTKINECAPMKWPKP-----------------KYD 247

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME---YQNDPVSWFQKRIRGNMAV-- 1405
            +V          A+T+ + I DLP +  G ++   E   Y+  P + +QK +R  + +  
Sbjct: 248  SVEE--------AVTLDEAISDLPPLTGGWNEKWDEKFSYEG-PTNDYQKLMRDWLDIGD 298

Query: 1406 --LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
              + DH+ +++ E +L    K+ +  G  +  L +E+ + S                 + 
Sbjct: 299  EMIHDHLIRKVREDDL-ETFKLMRSTGVKYSQLSEEQRRYSVTSKA-----FREGKKVKQ 352

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFH 1522
            NQ      + +        +T    M K G  + HP Q+R L+VRE AR Q FPD + F+
Sbjct: 353  NQKMSFGDKYNILKPNEPCLTITAHMSKDGYWYIHPHQNRTLSVREAARVQSFPDGFNFY 412

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
            G   ++  QIG AV P +AF LG+ L +++++++
Sbjct: 413  GGPSNRFHQIGEAVAPIVAFELGKSLMKSIKNEK 446


>gi|374988544|ref|YP_004964039.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis BCW-1]
 gi|297159196|gb|ADI08908.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 664

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 189/447 (42%), Gaps = 95/447 (21%)

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            G  +E  LA +D+F+G GGLS GLQ++G + T  A++++E A E    N P   + ++  
Sbjct: 36   GYGKERRLA-VDLFSGAGGLSLGLQRAGWT-TAAAVDFDERALETHAANFPGMSLRMDLG 93

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN 1233
            N   R  +E+  +                         P  G++D + GGPPCQ FS   
Sbjct: 94   NPAERDRLEQVLE-------------------------PAKGKIDLVAGGPPCQPFSRAG 128

Query: 1234 RFNQSTWSK--------VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
            R    +  +        ++ E+  A+L      +PR  L+ENV +    +     R+   
Sbjct: 129  RSKIRSLVEHHGRDAHDLRKELWSAYLDVVKRIKPRAVLMENVPDMGLGDDFFVVRVIEQ 188

Query: 1286 SLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSD 1345
             L E+GY  +  +++A  +GV Q RKR  + A +  +   EW + +      E +  LS 
Sbjct: 189  QLEELGYATQVRLVDAWRYGVPQHRKRLILLARNDIEKF-EWQQEV----TEEERTTLSH 243

Query: 1346 NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIME------YQNDPVSWFQK-- 1397
                                    IGDLP +    ++ + E        ++  S F K  
Sbjct: 244  -----------------------AIGDLPPLKVVPTERVGERVRSYDTPSEDQSEFAKEM 280

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
            R R    V+ DH+++ + +               DW         + +  +   I   L 
Sbjct: 281  RKRAKREVVFDHMTRRVRQ--------------DDWEIFQ----SMDSDTLYSEIAPELQ 322

Query: 1458 NTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFP 1516
              +  H   K  + +LDW  +   SIT    + K G  + HPDQ+R LTVRE AR Q FP
Sbjct: 323  RYSAEHFTDK--YKKLDW-NDLSRSIT--AHIAKDGYWYIHPDQNRTLTVREAARIQTFP 377

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
            D ++F G+     RQIGNAVPP L  A
Sbjct: 378  DRFRFAGTRSDAFRQIGNAVPPLLGKA 404


>gi|1644234|dbj|BAA11339.1| ApaLI methylase [Acetobacter pasteurianus]
          Length = 429

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 189/437 (43%), Gaps = 74/437 (16%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             + +FAG GG S G  Q+G+    +  E    A + ++ N                 V  
Sbjct: 7    VVSLFAGAGGFSSGFSQAGLKPL-FGAEINADACQTYQEN-----------------VGS 48

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C   +            +++D + I  L    +   + GGPPCQGFS     N   ++ 
Sbjct: 49   PCHQLD-----------LSTVDPSHIEMLTGGKRPFVVIGGPPCQGFSTAGPRN---FAD 94

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  +I  +L+  +   PR+F+ ENV   ++   G+     +   ++MGY VR   +   
Sbjct: 95   PRNLLIFNYLNIVERLSPRWFIFENVEGLLTSGGGRDLARLVREFVDMGYSVRLQKVNLA 154

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
            A+GV Q+RKR  I          ++PE ++ F + + K               A+G P  
Sbjct: 155  AYGVPQTRKRVLIIGNRLGIDF-QFPEELYSFDSGKAK--------------KASGKPL- 198

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR-GN-MAVLTDHISKEMNELNLI 1420
            A ++ + +  L    +     +    ++PV+ F  R+R GN + V+T H+  E  E    
Sbjct: 199  APSLAEAVAGLGPAASDKDALVPYASSEPVNAFDARMRAGNRVEVVTHHVRVEAAE---- 254

Query: 1421 RCQKIPKRPGADWHDLPDE-----KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            R Q    +PG    DLP E       + +  +V D  P     T KR     G+  RL  
Sbjct: 255  RMQVELLKPGQTMKDLPPELWHESYRRRANRRVSDGTP-----TEKRGGAPSGI-KRL-- 306

Query: 1476 EGNFPT-SITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
             GN  + +IT     G     F HP + R LT+RECAR Q FPD Y++ G+     +QIG
Sbjct: 307  HGNLQSLTIT-----GAAAREFIHPTEHRPLTIRECARIQTFPDKYRWVGNNASVIQQIG 361

Query: 1534 NAVPPTLAFALGRKLKE 1550
            NAVPP  A  L + L++
Sbjct: 362  NAVPPLAAERLAKHLRD 378


>gi|262201418|ref|YP_003272626.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262084765|gb|ACY20733.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
          Length = 342

 Score =  119 bits (298), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 180/436 (41%), Gaps = 95/436 (21%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + + +A +D F+GCGG S G + +G+      ++ +  A   FK N  +S          
Sbjct: 2    RTDEVAVVDFFSGCGGTSAGFRSAGMQIAA-GLDSDPDASATFKRNFKKS---------- 50

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
              + +E  GD  + VST + +++  S            G V    G  PCQ FS  N  N
Sbjct: 51   --SFIE--GDIRN-VSTEQVSDVVPS------------GAVTLFAGCAPCQPFSRQNG-N 92

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
            +S  +  +  ++  F  F     P   ++ENV      ++       L ++   GY V  
Sbjct: 93   RSA-NDPRRNLLREFQRFVLALHPDLVVIENVPGLQLQSRKGPLDSFLRAISRDGYAVNV 151

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             +L A  FGV Q R+R  + A+   +  P  P P H  A                     
Sbjct: 152  RVLRALEFGVPQERRRLVVLASRIGE--PRMPRPTHAIA--------------------- 188

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
             G P R  TVR  IGDLPA+ +G    + +                     DH +  +++
Sbjct: 189  -GRPAR--TVRQVIGDLPAIADGDVHPLDD---------------------DHAAMRLSD 224

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            +N +R Q  P+  G D  D  DE           L+  C     K H      +GR+ W+
Sbjct: 225  VNRLRIQATPE--GGDRRDW-DEA----------LVSEC----HKVHGGHTDAYGRMWWD 267

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T +T        G   HPDQDR +++RE A  Q F   ++F GS+  + RQ+GNAV
Sbjct: 268  -RPATGLTTRCLSYSNGRFGHPDQDRAISLREAASIQTFSRRFRFEGSLTSRARQVGNAV 326

Query: 1537 PPTLAFALGRKLKEAV 1552
            PP +A  +G  L E++
Sbjct: 327  PPLMARKIGLSLVESL 342


>gi|443322505|ref|ZP_21051526.1| DNA-methyltransferase Dcm [Gloeocapsa sp. PCC 73106]
 gi|442787773|gb|ELR97485.1| DNA-methyltransferase Dcm [Gloeocapsa sp. PCC 73106]
          Length = 404

 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 192/450 (42%), Gaps = 95/450 (21%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            SQ   +A +D+FAG GG+S G +++G      A+E +      ++ N P   ++      
Sbjct: 5    SQRRPIA-VDLFAGAGGMSLGFERAGFDVLA-AVEVDPIHCATYQYNFPVGKVI------ 56

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                    C DA   +  ++   L+       +NN P    VD + GGPPCQG S M + 
Sbjct: 57   --------CQDASQ-IKATDIRRLSP------LNNQP----VDVVFGGPPCQGLSLMGKR 97

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
            +       +  ++  F+      +  +F+LENV   +     Q  +  +  L + GY+VR
Sbjct: 98   D---LDDPRNSLLQHFIRLVIELETNFFVLENVPGLIIGKCSQLLQEMIEQLAQNGYKVR 154

Query: 1296 --FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
              F  + A  +GV Q R+R F+     +  LPE+P P            L+D  +     
Sbjct: 155  ENFQTINACNYGVPQKRERLFLMGCKKNLPLPEYPSP------------LADQPK----- 197

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGA-----SKTIMEYQNDPVSWFQKRIRGNMAVLTD 1408
                        V D I DLP+V +          I+EY     S +  ++RG + V  D
Sbjct: 198  ------------VNDAIADLPSVTDYPILWQRDSAIVEYGK--ASPYSAQLRGLLTVEDD 243

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWH----DLPDEKVKLSTGQVVDLIPWCLPNTAKR-H 1463
            +  K + + +L+    + K            LP +   +S  +   L P  L NT +   
Sbjct: 244  YSYKRLYDKSLLTSSLLTKHSATCQERFALTLPGKVEPIS--RFYKLSPEGLCNTLRAGT 301

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
            N  +G             S T P+P+       HP + R +TVRE AR   +PD ++FH 
Sbjct: 302  NSDRG-------------SYTSPRPI-------HPWEARCITVREAARLHSYPDWFRFHV 341

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            +  H  RQ+GN+VPP LA A+ R++   ++
Sbjct: 342  TKWHGFRQVGNSVPPRLAQAIAREIMVTLQ 371


>gi|328947595|ref|YP_004364932.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447919|gb|AEB13635.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 476

 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 184/456 (40%), Gaps = 115/456 (25%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            ++  L  F+G  GL  G++++GI     A E E  A +   LN P ++ LI + N     
Sbjct: 74   NIVALSFFSGAMGLDYGIEKAGIHPL-LASEIEPNARKTILLNRP-NIGLIGDINNY--- 128

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                  D     + SE  E                  +D + GGPPCQ FS   +  +  
Sbjct: 129  ---SAKDIRKFANISEKQE------------------IDLVIGGPPCQAFSTAGQ--RKG 165

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF--------------------NKGQT 1279
            +   +  + L F+      +P++ ++ENVR  +S                      KG  
Sbjct: 166  FQDKRGNVFLTFIDRILELRPKFAVIENVRGILSAPFECEEMEKRFGFAPKTPEEKKGGA 225

Query: 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
                L  L E GY V F +  A  +G  Q R+R   + +   + +P  P     F     
Sbjct: 226  LLYILNKLEEGGYTVTFNLYNAANYGAPQKRERVVFFCSRDGEKVPYLPPTNDEFG---- 281

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
                  N+          G P +  TVR+ + DL        +  M++    + +F+   
Sbjct: 282  ------NF----------GLP-KWRTVREVLSDL----KEDEQKAMKFPEKRLKYFRMLK 320

Query: 1400 RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
             G       H+ +E+                   ++   EK+KL  G+            
Sbjct: 321  AGQYW---KHLPQEVQ------------------YEAMGEKLKLGGGKT----------- 348

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
                    G F R+ W+   PT +TDP  M    +C HPD+DR L+++E AR Q FPD +
Sbjct: 349  --------GFFRRVGWDEPSPTLVTDPT-MPATDLC-HPDKDRPLSIQEYARIQEFPDDW 398

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            +F G ++  ++QIGNAVP +L FA+G+++ + V S+
Sbjct: 399  KFFGEMKDVYKQIGNAVPISLGFAIGKQVVKLVSSQ 434


>gi|365128270|ref|ZP_09340555.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
 gi|363623307|gb|EHL74431.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
          Length = 359

 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 179/441 (40%), Gaps = 104/441 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F G GGL+ GLQ++GI      I+ ++    A+  N        NNC  I ++V
Sbjct: 3    IKAVDLFCGVGGLTYGLQKAGIPVVA-GIDIDDSCEYAYTHN--------NNCTFIHKSV 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                   ED V+  E   L    D            V  + G  PCQ FS   +  Q+  
Sbjct: 54   -------ED-VTGKEIRALLRGAD------------VKILVGCAPCQPFSSHQKDKQNRS 93

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
                 +++  F    +  +P    +ENV       K + F+  +++L  + Y V + ++ 
Sbjct: 94   KHKDWKLLYQFGRLVEETRPHIVSMENV---PELEKEKVFKDFVSTLEGLNYIVNYQVVN 150

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
               +GV Q RKR  + A+                   E+K++ + + ++           
Sbjct: 151  VANYGVPQRRKRLILLASR----------------RKEIKLIDATHQKH----------- 183

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               +TVRD IG LP +  G +      +ND +                HIS  ++ +NL 
Sbjct: 184  ---LTVRDAIGSLPRISAGEAN-----ENDRL----------------HISPALSPINLE 219

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R Q     PG  W D P+            L+  C      +   +  ++GR+ W+   P
Sbjct: 220  RIQH--SVPGGTWRDWPER-----------LVLNCHKKEGGK--TYASVYGRMKWDDLSP 264

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS-----IQHKHRQIGNA 1535
            T  T     G  G   HP+QDR +T+RE A  Q FP  YQF  S     I+   R IGNA
Sbjct: 265  TITTQFIGYG-TGRFGHPEQDRAITLREGAILQSFPPDYQFSPSNVEVPIRKIARHIGNA 323

Query: 1536 VPPTLAFALGRKLKEAVESKR 1556
            VPP L   +G  +  ++  KR
Sbjct: 324  VPPRLGEVIGESIIRSLPKKR 344


>gi|347726862|gb|AEP19809.1| C5 cytosine DNA methyltransferase [Helicobacter pylori]
          Length = 355

 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 174/429 (40%), Gaps = 81/429 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LD+F G GG S GL+          ++ ++ A   F+ NH  ++ +              
Sbjct: 6    LDLFCGAGGYSAGLENLKEFDALIGLDCDKQALITFENNHKNAIGV-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD        +  +LA  L            +++ I G PPCQGFS  N+         
Sbjct: 52   CGDITQTDIKEKVIKLAKKL------------EINMIIGRPPCQGFS--NKGKNLGLKDP 97

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            +  + L ++      +P  F++ENV+N +S  KG         L  +GYQ+ + IL A  
Sbjct: 98   RNFLFLEYIEIVKAIKPEIFIIENVKNIISCAKGYFLEEIKERLNALGYQLSYQILNAKD 157

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q R+RAFI  AS                          ++ ++ +       P ++
Sbjct: 158  YGVPQDRERAFIVGASRF------------------------SFDFNLLE------PSQS 187

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
            + V+D I DL  + +       +Y N   S +Q  +R N   L +H +   ++  L + +
Sbjct: 188  VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKNSPKLYNHQATNHSQAALEKLK 247

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI 1483
             I K  G +                      CLP       Q+K  + RL+W  N   +I
Sbjct: 248  LINKEQGKE----------------------CLPKNLHGEQQFKSTWRRLNWN-NISHTI 284

Query: 1484 TDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
                     G   H +  R +T R  AR Q F D+Y  +G+I    +QIGNAVP  LA A
Sbjct: 285  DTRYDTPSNGTNSHREMHRSITPRGAARIQSFSDNYMSYGNITSVCKQIGNAVPLLLALA 344

Query: 1544 LGRKLKEAV 1552
            LG+ + E +
Sbjct: 345  LGQAILETL 353


>gi|406880513|gb|EKD28849.1| hypothetical protein ACD_79C00184G0004 [uncultured bacterium]
          Length = 412

 Score =  118 bits (296), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 196/469 (41%), Gaps = 101/469 (21%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSG------ISSTKWA--------------------IEYE 1152
            N+   +D+FAG GGLSEG  ++G      I S K A                    I Y 
Sbjct: 2    NNYTYIDLFAGAGGLSEGFIRNGFLPVAHIESDKAACYTLLTRAAYHYLKKENKVHIYYS 61

Query: 1153 EPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLP 1212
               GE  + N   S M  N  N ++ A   K G         E   +  ++D  + NN  
Sbjct: 62   YLKGEISR-NTLYSFMPSNILNSVINA---KIG--------IENKNIFKTIDSLLNNN-- 107

Query: 1213 LPGQVDFINGGPPCQGFSGMNRFN-QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271
               +VD I GGPPCQ +S + R   +      +  + + +  F   ++P+ F+ ENV   
Sbjct: 108  ---KVDLIIGGPPCQAYSYIGRVALKHKKEDERNTLYIHYGRFLKKYRPKLFIFENVPGL 164

Query: 1272 VSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPM 1331
            ++  KG  F         +GY+V   +L A  +GV Q R+R  I           W + +
Sbjct: 165  LTAGKGMYFNNLQKYYKRLGYKVEARLLNAYNYGVVQHRERIIIIG---------WKKEL 215

Query: 1332 HVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDP 1391
            + F+ PE+K  ++  ++                   D   DLPA+ +GA++ +  Y +  
Sbjct: 216  N-FSYPEIKPSVNKYFR------------------DDIFYDLPAIKSGANQRLHLYSDSV 256

Query: 1392 VSWFQK-RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVD 1450
              +  K  IR  +  ++ H ++  N+ +L +  K+  +     + L +  +         
Sbjct: 257  NEYLSKTEIRNGVNFVSQHFTRPHNQKDL-KIYKLAIQTLKKGNQLKNNHI--------- 306

Query: 1451 LIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQD--RILTVR 1507
                  P   +     +    R     N P ++     + K G  F HPD++  R ++VR
Sbjct: 307  ------PENIRTQKNIEDFLDRFKVVDNKPHTMI--AHIAKDGHHFIHPDENQLRSISVR 358

Query: 1508 ECARSQGFPDSYQFHGSIQHKH------RQIGNAVPPTLAFALGRKLKE 1550
            E AR Q FPD Y F G I+  H      RQIGNAVPP LA  + RK+KE
Sbjct: 359  EAARIQSFPDDYYFEG-IKESHPRTAAFRQIGNAVPPLLAEKIARKIKE 406


>gi|301321463|gb|ADK70106.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
            mycoides SC str. Gladysdale]
          Length = 493

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 167/406 (41%), Gaps = 82/406 (20%)

Query: 1148 AIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENV 1207
            A+++ + A E FK N P S ++              CGD  +     E  + A  L    
Sbjct: 3    AVDFNKSALETFKHNMPWSDII--------------CGDITNESIRQEIIKRATKL---- 44

Query: 1208 INNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLEN 1267
                    +V+ I GGPPCQGFS  N+  +   +  +  +   +L      QP  F++EN
Sbjct: 45   --------KVNMIIGGPPCQGFS--NKGKKLGLNDKRNFLFKEYLEIVGKLQPEIFIIEN 94

Query: 1268 VRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEW 1327
            V+  ++   G        +  ++GY V +G+L A  FGV Q+R R  I     H      
Sbjct: 95   VKTMLTTANGYFLDQIQNTAKQLGYFVEYGVLNAYDFGVPQTRSRTTIICHKNH------ 148

Query: 1328 PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY 1387
                       +K+ + ++               + + + D I DL  + +   +    Y
Sbjct: 149  ----------PIKLPIGNH---------------KKVNIEDAISDLNYLNSNQGEFESNY 183

Query: 1388 QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQ 1447
              +P S +QK +R N   L +HI+   +++ L +   IP   G ++              
Sbjct: 184  LLEPKSEYQKMMRKNSNKLYNHITTNHSKIALKKLALIPAECGKEY-------------- 229

Query: 1448 VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVR 1507
                    L N  K   ++   +GRL W+   PT  T        G   HP  +R +T R
Sbjct: 230  --------LSNELKGKQKFNTTWGRLKWKEPSPTIDTRFDTPSN-GTNSHPVLNRTITPR 280

Query: 1508 ECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            E AR Q F D++ F G+     +QIGNAVPP LA ++G  + E ++
Sbjct: 281  EAARIQSFDDNFCFLGNKTEICKQIGNAVPPLLAKSIGLSIIEQIK 326


>gi|75906326|ref|YP_320622.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75700051|gb|ABA19727.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 431

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 191/447 (42%), Gaps = 81/447 (18%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            S++     +D+FAG GG++ G +Q+G      A+E +       + N P        C+V
Sbjct: 12   SKQRRPIAVDLFAGAGGMTLGFEQAGFDVLA-AVEIDPIHCAVHEYNFP-------FCSV 63

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
            + ++V E  G                  D + INN      +D I  G PCQGFS M + 
Sbjct: 64   LCKSVEETTGKEIR--------------DRSKINN----QDIDVIICGSPCQGFSLMGK- 104

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV- 1294
                +   +  ++  F       QP++F++ENVR        Q  +  +      GYQV 
Sbjct: 105  --RIFDDPRNSLVFHFHRLVLELQPKFFVMENVRGITLGEHKQILQALIHEFKSHGYQVE 162

Query: 1295 -RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
              + +L A  +GV Q+R+R F+  A     LP++P+P+        K   S+N +   + 
Sbjct: 163  ENYQVLNAAHYGVPQARERLFLIGAREDVKLPKYPKPI-------TKPAKSNNSKAKNL- 214

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTD 1408
            S     P    TV + IGDLP V            I EY     S +   +RG   +  D
Sbjct: 215  SRLPLCP----TVWEAIGDLPEVEQYPELLTRDWIIAEYGKP--SNYAAVLRGISTLADD 268

Query: 1409 HISKEMNELNLI-------RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK 1461
            +    + +  L+         Q   +R  A    +P E+  +S  +   L P  + NT +
Sbjct: 269  YSCDRLFDSRLLSSSLRTKHSQTTIERFAA---TIPGEREPIS--RFHKLHPSGVCNTLR 323

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
                     G   ++G+F    T P+P+       HP   R +TVRE AR   +PD ++F
Sbjct: 324  A--------GTDKYKGSF----TSPRPI-------HPFTPRCITVREAARLHSYPDWFRF 364

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            H +  H  RQ+GN+VPP LA A+  ++
Sbjct: 365  HITKWHGFRQVGNSVPPLLAKAVASEI 391


>gi|367478095|ref|ZP_09477417.1| putative Cytosine-specific methyltransferase [Bradyrhizobium sp. ORS
            285]
 gi|365269655|emb|CCD89885.1| putative Cytosine-specific methyltransferase [Bradyrhizobium sp. ORS
            285]
          Length = 368

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 175/435 (40%), Gaps = 91/435 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G              +E        +++ ++ +  +  N   +AV   
Sbjct: 6    IDLFAGAGGMTLGFTHRDFCGG-----FES----VLSIDNDQAAVDTHASNFGGKAV--- 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            C D E+ + T               N +P   + D + GGPPCQGFS +N+       + 
Sbjct: 54   CADIEEWLKT---------------NKVP---KADVVIGGPPCQGFSLLNKNRIGDERRA 95

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
              E    FL   +    R F++ENV    S      F         MG+++R  +L    
Sbjct: 96   LWE---PFLDVVELSGARTFVMENVAELYS---SAEFLAIKRRAKRMGFEMRAAVLNTAD 149

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRA 1363
            +GV Q+RKR  I      + +P +P P    A PE   +LS                 R 
Sbjct: 150  YGVPQTRKRT-IALGFKANLVPSFP-PTPTHAQPE--TLLSKRLP-------------RW 192

Query: 1364 MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQ 1423
             TVRD I DLPA   G                     G    L  H  +   +++L R  
Sbjct: 193  RTVRDAIADLPATPIGTEI------------------GTEKTLNLHFGRNPTDISLARYA 234

Query: 1424 KIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG---NFP 1480
             +P  PG +  DL    + L+        P C     ++ +    LFGRL W+       
Sbjct: 235  AVP--PGGNRFDLQRNALHLT--------PQCW---IRKTSGGTDLFGRLWWDRPSVTIR 281

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
            T    P+     G   HP ++R +T RE AR  GFPDS+ F G+     RQIGNAVPP  
Sbjct: 282  TEFFKPEK----GRYLHPVENRPITHREAARLMGFPDSFHFCGTKVEIARQIGNAVPPPF 337

Query: 1541 AFALGRKLKEAVESK 1555
            A A+   +KE + S+
Sbjct: 338  AGAIAEVVKEILSSR 352


>gi|121583544|ref|YP_973963.1| DNA-cytosine methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120596788|gb|ABM40221.1| DNA-cytosine methyltransferase [Polaromonas naphthalenivorans CJ2]
          Length = 373

 Score =  118 bits (296), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 182/447 (40%), Gaps = 101/447 (22%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + + +  +D+F G GGLS GL++ G+      I+ +      ++ NH  +  L+ +    
Sbjct: 20   KADRIEAIDLFCGAGGLSCGLKKVGVRVVA-GIDVDAACQYPYEANHRGAKFLLQD---- 74

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
                          V+T   A+L A         L  P  V  + G  PCQ FS      
Sbjct: 75   --------------VTTLTGADLEA---------LWSPTSVRLLAGCAPCQPFSSYANTK 111

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
             S+ +  +  ++  F       +P    +ENV    +      F+  L +L  +GY + +
Sbjct: 112  ASSEND-KWGLLYQFGRLVTETKPDLVTMENVPGLAA---QAPFKAFLHTLKTLGYSIEY 167

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             +L A  +G  Q RKR  + A+           P+ + AA                  +A
Sbjct: 168  AVLNAADYGAPQQRKRLVLLAS--------LLGPVQMPAATH--------------PGSA 205

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            N      +TVR  +G LPA+G+G +       +DP+                H +  ++ 
Sbjct: 206  NW-----VTVRKAVGALPAIGDGEASA-----HDPL----------------HRAAALSA 239

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            LN  R +    RPG  W D P            DL+  C    + RH+   G++GR++W+
Sbjct: 240  LNQQRVRA--SRPGGTWRDWPP-----------DLVAECHRKASGRHS--AGVYGRMEWD 284

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS-----IQHKHRQ 1531
               PT  T     G  G   HP Q R +++RE A  Q FP SY+F         +   R 
Sbjct: 285  KPAPTMTTLCIGYGN-GRFGHPQQHRGISLREAAIFQSFPTSYKFVKPGMRVLAKPLARL 343

Query: 1532 IGNAVPPTLAFALGRKLKEAVESKRST 1558
            IGNAVPP L  A+GR L+ AV S+  T
Sbjct: 344  IGNAVPPKLGEAVGRALQAAVRSRGGT 370


>gi|312902257|ref|ZP_07761465.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|283466064|emb|CBG92839.1| hypothetical protein [Enterococcus casseliflavus]
 gi|310634316|gb|EFQ17599.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 470

 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 167/431 (38%), Gaps = 111/431 (25%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            ++ FAG GGLS GL+++G +S    IE +  A    KLN P   ++  + N I       
Sbjct: 138  VETFAGAGGLSLGLEKAGFNSVA-DIEIDSTACSTLKLNRPNWNVIEGDINTI------- 189

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS------GMNRFNQ 1237
               A++ +   E                   G++D ++GG PCQ FS      G+N    
Sbjct: 190  ---AQNGIFNHE--------------QFTFRGELDVLSGGYPCQSFSYAGLRQGLN---- 228

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
                  +  +   +       QP+ F+ ENV+  ++ + G+T    +    + GYQV + 
Sbjct: 229  ----DTRGTLFHPYSQLLVQLQPKMFIAENVKGLLNHDNGRTLETMIEIFEDSGYQVFWN 284

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            IL A  +GV+Q R+R  I                 +F   +        Y Y  V     
Sbjct: 285  ILNAWNYGVAQKRERIVIIGIRN-----------DLFEQQQYSFKFPKEYTYQPV----- 328

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                    +RD + D+P    GAS                           + + ++  L
Sbjct: 329  --------LRDVLKDVPK-SEGAS---------------------------YPASKIEVL 352

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
            NL+        PG  W +LP+   K   G             A  H+             
Sbjct: 353  NLV-------PPGGCWVNLPENVAKSYMG-------------ASYHSGGGRRGMARRLSW 392

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVP 1537
            N P+      P  K     HPD+ R  TVRE AR Q FPD ++F GS  ++++QIGNAVP
Sbjct: 393  NEPSLTLTTSPAQKQTERCHPDETRPFTVREYARIQSFPDDWEFAGSTNNQYKQIGNAVP 452

Query: 1538 PTLAFALGRKL 1548
              LA A+G+ +
Sbjct: 453  VNLAEAIGKSV 463


>gi|302520399|ref|ZP_07272741.1| DNA cytocine methyl transferase [Streptomyces sp. SPB78]
 gi|302429294|gb|EFL01110.1| DNA cytocine methyl transferase [Streptomyces sp. SPB78]
          Length = 434

 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 177/427 (41%), Gaps = 77/427 (18%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GG+S G         + A + E        +  P +      CN    A + 
Sbjct: 40   VVDLFSGGGGMSYGFHAHPSFEMRGAADVE--------VGKPSTGHGAIGCNATYEANIG 91

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                A D  +  EA ELAA +          PG VD +   PPC GFS   R     W++
Sbjct: 92   VKPMAVDLAAI-EADELAAQVAP--------PGGVDVLLACPPCTGFS---RAVSKNWAQ 139

Query: 1243 --VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  ++          +P+  L+ENV   ++ N    F     SL  MGY VR     
Sbjct: 140  DDPRNSLVARVADHVAIMRPKVVLMENVPQLLTGNFRHHFHALKTSLEGMGYTVRASSHI 199

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
               FG+ Q R+RA + A +    LP +               L D +   ++R       
Sbjct: 200  LTKFGLPQQRERALVVATA--SGLPAY--------------TLEDLWHGYSLRE------ 237

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
              ++TVR  IG LPA+  G      ++ +D                 +H S  +   +L 
Sbjct: 238  -ESLTVRRAIGHLPAIRAGE-----KHPHD----------------ENHTSSALAGESLA 275

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVD-LIPWCLPNT-AKRHNQWKGLFGRLDWEGN 1478
            R   IP   G  W DL      L T +    LIP       A R N +  ++GR+ W   
Sbjct: 276  RIAAIPHD-GGSWADL------LRTPETEKYLIPSMRKAIEAGRLNAYSDVYGRMYWHRP 328

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK-HRQIGNAVP 1537
             PT   +   +G  G   HP+QDR+ TVRE A   GFP++Y+F GS +   +RQIG+AVP
Sbjct: 329  APTIKRECSHVGN-GRYAHPEQDRLCTVRELAILNGFPENYKFIGSSRKNLYRQIGDAVP 387

Query: 1538 PTLAFAL 1544
            P ++F L
Sbjct: 388  PLVSFQL 394


>gi|238917713|ref|YP_002931230.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC 27750]
 gi|238873073|gb|ACR72783.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC 27750]
          Length = 477

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 190/450 (42%), Gaps = 97/450 (21%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            ++ L  LD+F G GGLS G  Q G   T  A + ++   + +  NHPE+           
Sbjct: 99   DDSLKMLDLFCGAGGLSLGFTQEGFV-TSLANDIQDCCVDTYAHNHPET----------- 146

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                       D +   +  ++  +LDE     L     VD + GGPPCQGFS  NR  Q
Sbjct: 147  ---------PRDHIVLGDIKDVVKNLDE-----LLAGRNVDIVVGGPPCQGFSMANR--Q 190

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNK--GQTFRLTLASLLEMGYQVR 1295
                  +  +  +++       P++F++ENV+  +S  +   + FR        +GY V 
Sbjct: 191  RLIDDPRNHLYKSYVEVVKKVHPKFFVMENVKGMLSVAEQVKEDFR-------AIGYSVE 243

Query: 1296 FGILEAGAFGVSQSRKRAF----------------IWAASPHDTLPEWPEPMHVFAAPEL 1339
              IL A  FGV Q+R+R                  I+A S  + +PE      +FA  EL
Sbjct: 244  CHILNAKNFGVPQNRERLIYIGNCMGVDNEQIFNEIFALS--ENIPEHNLGDALFALREL 301

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRI 1399
                    + S V+++       +             G    K  +   ND +S+  +  
Sbjct: 302  --------EASRVKNSTESGSIES-------------GYKIEKNNITETNDYISYINQDK 340

Query: 1400 RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
              N  V+++H ++  N+ ++    ++   PG D  D P         ++ D++P+     
Sbjct: 341  VVN--VVSNHKARYNNDRDIEIYGRM--EPG-DRSDDP---------KIADIMPY----- 381

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
            A+R+  +K  + +L+ +     +IT         M  HP Q R LT RE AR Q +PD Y
Sbjct: 382  ARRNGIFKDKYFKLEND-KVCKTITAHMKF-DCNMYIHPTQARGLTPREAARVQSYPDDY 439

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
             F G+    + QIGN+VPP L  A+   +K
Sbjct: 440  FFRGAYTKTYMQIGNSVPPLLGRAIAHVIK 469


>gi|449299607|gb|EMC95620.1| hypothetical protein BAUCODRAFT_90408, partial [Baudoinia
            compniacensis UAMH 10762]
          Length = 1123

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 190/452 (42%), Gaps = 75/452 (16%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN--HPESLMLINNCNVILR 1178
            L  + IF G G L  GL+  G     +AI++ E A  +++ N  +P +   + + N    
Sbjct: 726  LRGMGIFCGGGNLDRGLEDGGAVVFDYAIDWAEHALHSYRANSRNPNARYFLGSVN---- 781

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                   D              A++           G V+ +  G PC GFS +     S
Sbjct: 782  -------DYLAAALDGAGDASIAAV-----------GAVEVLGAGSPCPGFSNLQLNKFS 823

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG-------QTFRLTLASLLEMG 1291
              S     M+ A +++ D++ P+YFLLENV   V+  +G         F   LA+L+ +G
Sbjct: 824  DESLRNASMVAAVIAYVDFYSPKYFLLENV---VNMTRGLGPDKTENVFSQVLAALVGLG 880

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSA 1351
            YQV+  +++A ++G  Q R R FI A +P   L   P P+H    P      +  ++  A
Sbjct: 881  YQVQQFLMDAWSYGSPQQRTRVFIVATAP--GLDILPVPVHTHDHPS-----NMGFRERA 933

Query: 1352 VRSTANG----------APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
            +  ++NG           PF  +++ D   DLP + +   +    +              
Sbjct: 934  LGRSSNGLPFGQRRNDWTPFPHVSISDACSDLPEITDSQPQLCPSF-------------- 979

Query: 1402 NMAVLTDH-ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                  DH  S E    +  R   IP RP         ++  ++ G+ +D       + A
Sbjct: 980  -----PDHRTSSEEGADSRSRIALIPLRPYGMGLVKAVQQGLITGGEPLDYYNRLGKHQA 1034

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
            K+++     + R+  +G  PT  T  +   G  G   H  + R +TV+EC R+QG+ D  
Sbjct: 1035 KKNST---TYARVRRDGLMPTLTTVLRIGDGIAGRTIHWREHRNVTVQECKRAQGYWDEE 1091

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
               GS   + + IGN+V   ++ ALG  LKEA
Sbjct: 1092 VLVGSPAQQMKIIGNSVDRKVSLALGVALKEA 1123


>gi|213692027|ref|YP_002322613.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
            infantis ATCC 15697 = JCM 1222]
 gi|213523488|gb|ACJ52235.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
            infantis ATCC 15697 = JCM 1222]
          Length = 354

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 177/453 (39%), Gaps = 125/453 (27%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGI-------SSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            ++ +D+F G GGLS GL+Q G+       ++   A  YEE     F              
Sbjct: 7    ISAIDLFCGTGGLSLGLKQGGVRVVAGIDNAASCAYPYEENIKAKF-------------- 52

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--- 1230
              + ++V E  GD                     +  L     V  + G  PCQ FS   
Sbjct: 53   --VRKSVREVTGDE--------------------LKRLWGRSSVRLLAGCAPCQPFSSQR 90

Query: 1231 -GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
             G++   + +W      ++L F        P Y  +ENV       K + F   ++ L E
Sbjct: 91   RGVDTSQEQSWP-----LLLEFGRLVRETTPDYVTMENVPRL---QKSEVFEEFVSILRE 142

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
             GYQV   +L    +G+ Q R+R  + A    D     P P           +  D+Y+ 
Sbjct: 143  TGYQVAHSVLFGPDYGLPQRRRRLVLLAGRGTDV--PIPSPT----------VDKDSYR- 189

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
                           TV D I DLP +  G        ++DP      R+         H
Sbjct: 190  ---------------TVSDAIQDLPPLSAG--------EHDP----DDRL---------H 213

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
             ++ +  LNL R Q     PG  W D P+E           L+  C   T    + +K  
Sbjct: 214  FARNLTPLNLRRIQA--SEPGGTWKDWPEE-----------LLLECQKKTT--GSTFKSF 258

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-----S 1524
            +GR++W+   PT  T     G  G   HP+QDR LT+RE +R QGFPDS+ F       +
Sbjct: 259  YGRMEWDKPSPTITTQSYNPG-TGRFTHPEQDRTLTLREASRLQGFPDSFMFTKPGEPIT 317

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
              +  R IGNAVPP    A+ R++    + KR+
Sbjct: 318  FTNVGRLIGNAVPPVFGKAIARQIVAVEKEKRN 350


>gi|229552043|ref|ZP_04440768.1| DNA-cytosine methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539457|ref|YP_003173956.1| cytosine-specific methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|385835105|ref|YP_005872879.1| DNA (cytosine-5-)-methyltransferase family protein [Lactobacillus
            rhamnosus ATCC 8530]
 gi|229314620|gb|EEN80593.1| DNA-cytosine methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151133|emb|CAR90105.1| Cytosine-specific methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|355394596|gb|AER64026.1| DNA (cytosine-5-)-methyltransferase family protein [Lactobacillus
            rhamnosus ATCC 8530]
          Length = 415

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 195/450 (43%), Gaps = 84/450 (18%)

Query: 1124 LDIFAGCGGLSEGLQQ------SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC---N 1174
            +D+F+G GGL+EG ++      + +  +  A +      + ++L     L    N     
Sbjct: 6    IDLFSGAGGLTEGFRRPEYNILAHVEMSVDACQTLRLRDDYYQLKKRNMLQQYRNFLDGK 65

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAE------LAASLDENVINNLPLPGQVDFINGGPPCQG 1228
            + L  + ++CG  +  ++ +E  +      + A +D  + N      QV  I GGPPCQ 
Sbjct: 66   ISLSELEQQCGLRQKALTINETIDTGTIDGILAKIDSKLSNR-----QVHGIIGGPPCQA 120

Query: 1229 FSGMNRFNQSTWSKVQCEMILA--FLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTL-- 1284
            +S + R       +    + L   ++ F ++++P +FL ENVR  +SF      RL    
Sbjct: 121  YSTVGRKRNEAKKETDKRIYLYRFYIQFLEHYKPEFFLFENVRGLLSFKDLDGKRLFPKM 180

Query: 1285 -----ASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL 1339
                 A   ++GY + + +++   FGV Q RKR  ++     + LP++            
Sbjct: 181  KQEFEAITDKLGYHIDWKLIDCSEFGVPQERKRIILYGQ--RNDLPKF------------ 226

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY-QNDPVSWFQKR 1398
                S   + + ++ T         TV +   DLP +  G  +T  +Y +  P ++  + 
Sbjct: 227  ----SFFERLADLQETPG-------TVGELFRDLPKLKAG--ETCNKYSKAQPCAFVVEN 273

Query: 1399 IRGNMAVLTDHISKEMNELNL----IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
            +R   + LT ++++   EL+L    I  +K  K     ++DLP++   L T         
Sbjct: 274  LRTPASKLTQNVARPNRELDLKIYKIAAEKRAKHKILHYNDLPED---LQT--------- 321

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECAR 1511
                    HN  K    R         S T    + K G  + HPD  Q+R +TVRE AR
Sbjct: 322  --------HNNKKAFLDRFKAVPADGVSQTVVAHIAKDGHYYIHPDVEQNRSITVREAAR 373

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             Q FPD + F GS     +QIGNAVPP LA
Sbjct: 374  IQTFPDDFYFMGSRTQAFKQIGNAVPPYLA 403


>gi|384199186|ref|YP_005584929.1| DNA methylase [Bifidobacterium longum subsp. infantis ATCC 15697 =
            JCM 1222]
 gi|320458138|dbj|BAJ68759.1| DNA methylase [Bifidobacterium longum subsp. infantis ATCC 15697 =
            JCM 1222]
          Length = 349

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 177/453 (39%), Gaps = 125/453 (27%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGI-------SSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            ++ +D+F G GGLS GL+Q G+       ++   A  YEE     F              
Sbjct: 2    ISAIDLFCGTGGLSLGLKQGGVRVVAGIDNAASCAYPYEENIKAKF-------------- 47

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--- 1230
              + ++V E  GD                     +  L     V  + G  PCQ FS   
Sbjct: 48   --VRKSVREVTGDE--------------------LKRLWGRSSVRLLAGCAPCQPFSSQR 85

Query: 1231 -GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
             G++   + +W      ++L F        P Y  +ENV       K + F   ++ L E
Sbjct: 86   RGVDTSQEQSWP-----LLLEFGRLVRETTPDYVTMENVPRL---QKSEVFEEFVSILRE 137

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
             GYQV   +L    +G+ Q R+R  + A    D     P P           +  D+Y+ 
Sbjct: 138  TGYQVAHSVLFGPDYGLPQRRRRLVLLAGRGTDV--PIPSPT----------VDKDSYR- 184

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
                           TV D I DLP +  G        ++DP      R+         H
Sbjct: 185  ---------------TVSDAIQDLPPLSAG--------EHDP----DDRL---------H 208

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
             ++ +  LNL R Q     PG  W D P+E           L+  C   T    + +K  
Sbjct: 209  FARNLTPLNLRRIQA--SEPGGTWKDWPEE-----------LLLECQKKTT--GSTFKSF 253

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-----S 1524
            +GR++W+   PT  T     G  G   HP+QDR LT+RE +R QGFPDS+ F       +
Sbjct: 254  YGRMEWDKPSPTITTQSYNPG-TGRFTHPEQDRTLTLREASRLQGFPDSFMFTKPGEPIT 312

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
              +  R IGNAVPP    A+ R++    + KR+
Sbjct: 313  FTNVGRLIGNAVPPVFGKAIARQIVAVEKEKRN 345


>gi|317483226|ref|ZP_07942221.1| C-5 cytosine-specific DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915295|gb|EFV36722.1| C-5 cytosine-specific DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 349

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 177/453 (39%), Gaps = 125/453 (27%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGI-------SSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            ++ +D+F G GGLS GL+Q G+       ++   A  YEE     F              
Sbjct: 2    ISAIDLFCGTGGLSLGLKQGGVRVVAGIDNAASCAYPYEENIKAKF-------------- 47

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--- 1230
              +  +V E  GD                     +  L     V  + G  PCQ FS   
Sbjct: 48   --VRESVREVTGDE--------------------LKRLWGRSSVRLLAGCAPCQPFSSQR 85

Query: 1231 -GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
             G++   + +W      ++L F        P Y  +ENV       K + F   ++ L E
Sbjct: 86   RGVDTSQEQSWP-----LLLEFGRLVRETTPDYVTMENVPRL---QKSEVFEEFVSILRE 137

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
             GYQV   +L    +G+ Q R+R  + A    D     P P           +  D+Y+ 
Sbjct: 138  TGYQVAHSVLFGPDYGLPQRRRRLVLLAGRGTDV--PIPSPT----------VDKDSYR- 184

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH 1409
                           TV D I DLP +  G        ++DP      R+         H
Sbjct: 185  ---------------TVSDAIQDLPPLSAG--------EHDP----DDRL---------H 208

Query: 1410 ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
             ++ +  LNL R Q    +PG  W D P+E           L+  C   T    + +K  
Sbjct: 209  FARNLTPLNLRRIQA--SKPGGTWKDWPEE-----------LLLECQKKTT--GSTFKSF 253

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-----S 1524
            +GR++W+   PT  T     G  G   HP+QDR LT+RE +R QGFPDS+ F       +
Sbjct: 254  YGRMEWDKPSPTITTQSYNPG-TGRFTHPEQDRTLTLREASRLQGFPDSFMFTKPGEPIT 312

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
              +  R IGNAVPP    A+ R++    + KR+
Sbjct: 313  FTNVGRLIGNAVPPVFGKAIARQIVAVEKEKRN 345


>gi|257867246|ref|ZP_05646899.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873580|ref|ZP_05653233.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801302|gb|EEV30232.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807744|gb|EEV36566.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|347952138|gb|AEP33195.1| hypothetical protein [Enterococcus faecalis]
          Length = 470

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 169/434 (38%), Gaps = 117/434 (26%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            ++ FAG GGLS GL+++G +S    IE +  A    KLN P       N NVI       
Sbjct: 138  VETFAGAGGLSLGLEKAGFNSVA-DIEIDSTACSTLKLNRP-------NWNVI------- 182

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINN---LPLPGQVDFINGGPPCQGFS------GMNR 1234
             GD               ++ +N I N       G++D ++GG PCQ FS      G+N 
Sbjct: 183  EGDIN-------------TIAQNGIFNHDQFTFRGELDVLSGGYPCQSFSYAGLRQGLN- 228

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
                     +  +   +       QP+ F+ ENV+  ++ + G+T    +    + GYQV
Sbjct: 229  -------DTRGTLFHPYSQLLVQLQPKMFIAENVKGLLNHDNGRTLETMIEIFEDSGYQV 281

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             + IL A  +GV+Q R+R  I                 +F   +        Y Y  V  
Sbjct: 282  FWNILNAWNYGVAQKRERIVIIGIRN-----------DLFEQQQYSFKFPKEYTYQPV-- 328

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                       +RD + D+P    GAS                           + + ++
Sbjct: 329  -----------LRDVLKDVPK-SEGAS---------------------------YPASKI 349

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
              LNL+        PG  W +LP+   K   G             A  H+          
Sbjct: 350  EVLNLV-------PPGGCWVNLPENVAKSYMG-------------ASYHSGGGRRGMARR 389

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
               N P+      P  K     HPD+ R  TVRE AR Q FPD ++F GS  ++++QIGN
Sbjct: 390  LSWNEPSLTLTTSPAQKQTERCHPDETRPFTVREYARIQSFPDDWEFAGSTNNQYKQIGN 449

Query: 1535 AVPPTLAFALGRKL 1548
            AVP  LA A+G+ +
Sbjct: 450  AVPVNLAEAIGKSV 463


>gi|404371674|ref|ZP_10976978.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|404301398|gb|EEH97401.2| DNA (cytosine-5-)-methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 407

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 190/470 (40%), Gaps = 103/470 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI---------- 1170
            +  +D+FAG GGLSEG Q+ G    K+    E        L   ++   +          
Sbjct: 1    MYCIDLFAGAGGLSEGFQRKGF---KFFAHVEMDKAACMTLQTRQAFYFLKRNRRLYIYE 57

Query: 1171 --------------NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ 1216
                          N  N I ++++    +AE  ++     ++   +DEN  N      +
Sbjct: 58   SYLRGEISREELYSNVPNRIFKSII----NAE--INEDTIEDVFEKIDENRRNR-----E 106

Query: 1217 VDFINGGPPCQGFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            VD I GGPPCQ +S  G +R         +  + L ++ F + ++P+ F+ ENV   +S 
Sbjct: 107  VDVIIGGPPCQAYSVIGRSRDPNGMIGDRRNYLYLEYIKFLNRYRPKVFVFENVLGLLSA 166

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
              G  F     +  E GY++ + +L A  FGV + R+R  I           W E +  F
Sbjct: 167  QNGTIFEDMKINFSEAGYKIDYKVLNAKDFGVLEDRRRIIIIG---------WREDID-F 216

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPV-- 1392
              P   I   +                   T+RD   DLP + +G      EY N+ +  
Sbjct: 217  RYPTFNIKRKN------------------FTIRDLFSDLPFINSG------EYNNEYLVD 252

Query: 1393 ---SWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
                  +  +R N  VL+ H  +  NE +L     I +     W+    E  KL   +  
Sbjct: 253  TNECLIKTHVRKNWNVLSQHECRLNNERDL----SIYRMYVETWNS---EGRKLRYNE-- 303

Query: 1450 DLIPWCLPNTAKRHNQWKGLFGRLD---WEGNFPTSITDPQPMGKVGMCF-HPD--QDRI 1503
                  LP     H+       R +   +EG   T +     M K G  + HPD  Q+R 
Sbjct: 304  ------LPEELMTHSNRDSFLDRFNIVPYEGICHTVVAH---MAKDGHYYIHPDINQNRS 354

Query: 1504 LTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            L+VRE AR Q FPD Y F  S     +QIGNAVPP +A  +   +K+ +E
Sbjct: 355  LSVREAARIQSFPDDYYFENSRTAAFKQIGNAVPPLMAEMIALSIKKQLE 404


>gi|78778763|ref|YP_396875.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
            9312]
 gi|78712262|gb|ABB49439.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
            9312]
          Length = 686

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 196/452 (43%), Gaps = 77/452 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS GL                         H  +  +I  C++   ++M 
Sbjct: 54   AVDLFSGAGGLSLGL-------------------------HRANFDVILACDIRNDSIMT 88

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVIN-NLPLPGQVDFINGGPPCQGFS---GMNRFNQS 1238
                   C   S   +L+     N I+  L   G++  I GGPPCQ FS      + N+ 
Sbjct: 89   HRHHFGGC---SYECDLSKRKVINEISEQLNKCGEISLIAGGPPCQPFSRNIKWRKHNEE 145

Query: 1239 TWSKVQ------CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
              ++ Q       E+  +F+S  +  +P+ FL+ENV +     + + +R  +    + GY
Sbjct: 146  VSAQHQELNEDRRELWESFISIVEQVKPKAFLMENVTDIAQTGEQEIYRSIINRAEKAGY 205

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSA 1351
            ++   ++ A  +GV Q R R FI     ++  P +WP+P                 +Y +
Sbjct: 206  RINPKLIYAWQYGVPQLRPRLFISGTKINECAPMKWPKP-----------------KYDS 248

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN--DPVSWFQKRIRGNMAV---- 1405
            V          A+T+ + I DLP +  G ++   E  +   P + +QK +R  + +    
Sbjct: 249  VEE--------AVTLDEAISDLPPLKGGWNEKWDEKYSYEGPKNDYQKLMRDWLDIDDEM 300

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            + DH+ +++ E +L    K+ +  G  +  L +E+ + S                 + NQ
Sbjct: 301  IHDHLIRKVREDDL-ETFKLMRSTGVKYSQLSEEQRRYSVTSKA-----FREGKKVKQNQ 354

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGS 1524
                  + +        +T    M K G  + HP Q+R L+VRE AR Q FPD + F+G 
Sbjct: 355  KMSFGDKYNILKPNEPCLTITAHMSKDGYWYIHPHQNRTLSVREAARVQSFPDGFNFYGG 414

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
              ++  QIG AV P +AF LG+ L +++++ +
Sbjct: 415  PSNRFHQIGEAVAPIVAFELGKSLMKSIKNDK 446


>gi|365837695|ref|ZP_09379055.1| DNA (cytosine-5-)-methyltransferase [Hafnia alvei ATCC 51873]
 gi|364561408|gb|EHM39312.1| DNA (cytosine-5-)-methyltransferase [Hafnia alvei ATCC 51873]
          Length = 346

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 180/439 (41%), Gaps = 104/439 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML---INNCNVIL 1177
            +   D F+GCGG S GL+ +G     + ++ +  +   F  N  ++  +   I N +V +
Sbjct: 3    IKVFDFFSGCGGTSAGLKAAGFDIV-FGLDIDNESAGTFTKNFSDAFFINDDIRNVDVNI 61

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                      +D V T +A                   ++    G  PCQ FS  N  NQ
Sbjct: 62   ---------IKDMVDTYKANS-----------------ELVLFCGCAPCQPFSRQN--NQ 93

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG-YQVRF 1296
                  +  ++  F  F +  QP + L+ENV      +      L+   L++   Y    
Sbjct: 94   KKTDDPRLNLLWEFGRFVETCQPDFVLVENVPGIQKLDVSSGPLLSFIELIKSNKYHSNH 153

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
            G++ A  +GV Q R+R F+  AS   ++ E PE  H                        
Sbjct: 154  GVIPAIWYGVPQKRER-FVLLAS-KKSIVELPEQTH------------------------ 187

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            +G      TVRD I DLP +  G +                        + DH +  ++ 
Sbjct: 188  DGETTPYSTVRDWISDLPPISAGETH---------------------PQIMDHAAPSLSA 226

Query: 1417 LNLIRCQKIPKRPGAD-WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            LN+ R +  P+  G + W   P+E           L+  C     K HN    ++GRL W
Sbjct: 227  LNIKRIKATPEGKGRESW---PEE-----------LMLEC----HKNHNGHSDVYGRLAW 268

Query: 1476 E--GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
            +   +  T+       G+ G   HP+Q+R L+VRE A  Q FP  Y FHGS+  K +QIG
Sbjct: 269  DKPASGLTTRCISYSNGRFG---HPEQNRALSVREAASLQTFPRDYLFHGSLSSKAKQIG 325

Query: 1534 NAVPPTLAFALGRKLKEAV 1552
            NAVPP +A ALG+ + +++
Sbjct: 326  NAVPPKMAEALGKAILKSI 344


>gi|416119856|ref|ZP_11594967.1| DNA-cytosine methyltransferase [Campylobacter concisus UNSWCD]
 gi|384576884|gb|EIF06199.1| DNA-cytosine methyltransferase [Campylobacter concisus UNSWCD]
          Length = 347

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 184/433 (42%), Gaps = 104/433 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +A +D+F G GGL+ GL +SGI+     I+ +E    A++ N        N+   I ++V
Sbjct: 3    IAAIDLFCGIGGLTYGLSKSGINVVA-GIDLDESCKFAYERN--------NHGIFIHKSV 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             E        V++ E  EL    D            +  + G  PCQ FS   +  ++  
Sbjct: 54   NE--------VTSKEIDELFGDTD------------IKILVGCAPCQPFSTHQKNKKNRS 93

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            S     ++  FL   +   P+   +ENV       K + F   + +L   GY V+F I +
Sbjct: 94   SHKDWGLLYDFLRLVEQTSPQIVSMENV---PELRKERVFADFVDNLKLQGYSVKFKIHD 150

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV+Q RKR  + A+   D                  I  +++++            
Sbjct: 151  ASDYGVAQRRKRLLLLASKFGD------------------IEFAESHE------------ 180

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
             + +TV+D I  +  +  G    I + + D +                HIS  + ++N+ 
Sbjct: 181  -KKLTVKDVIFKIDKIKAG----ITDNKKDRL----------------HISPMLTDINIK 219

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R ++   + G  WHD  +E           L+P C   T+ +   +K ++GR+ W+   P
Sbjct: 220  RIKQ--SKQGGSWHDWDEE-----------LLPNCYKKTSGQ--SYKSVYGRMSWDDVAP 264

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-----HGSIQHKHRQIGNA 1535
            T  T     G  G   HP+QDR +++RE A  Q FP  YQF       +++   RQIGNA
Sbjct: 265  TLTTQFINYG-TGRFGHPEQDRAISLREGALLQSFPIEYQFIDEDEKINMRKIARQIGNA 323

Query: 1536 VPPTLAFALGRKL 1548
            VPP L   +G+ +
Sbjct: 324  VPPKLGEHIGKSV 336


>gi|397171051|ref|ZP_10494461.1| DNA-cytosine methyltransferase [Alishewanella aestuarii B11]
 gi|396087525|gb|EJI85125.1| DNA-cytosine methyltransferase [Alishewanella aestuarii B11]
          Length = 349

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 149/346 (43%), Gaps = 70/346 (20%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G++D  +GGPPCQGFS   R     +   +  ++  +        P+ F+LENV  F   
Sbjct: 56   GELDLFSGGPPCQGFSKQRR-GAHIFDDPRNGLVKEYARLVKELLPKSFILENVAIFGQ- 113

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
             +G +  L L + +E  Y++      A  +G++Q+R+R  +        LP        F
Sbjct: 114  KRGLSQLLELENYVE-NYRLYPHFYNAADYGLAQTRERFILVGIRKDFELP--------F 164

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
              P+  +                    +  TV + IGDLP       +  M+Y   P  +
Sbjct: 165  IKPKPTVE-------------------KWRTVGEIIGDLP-------EPPMDYSEHPDYF 198

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
              +R R             + ++N+ R   +P+  G  W D+P            DL   
Sbjct: 199  NHQRAR-------------VTQINIERFSHVPQ--GGGWQDIP-----------FDLRLE 232

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSIT---DPQPMGKVGMCFHPDQDRILTVRECAR 1511
            C      +   W  ++GRL W G  PT IT   D    G+ G   HP Q+R LT RE AR
Sbjct: 233  CHKKADTKSGGWPDVYGRLLWNGQCPT-ITGGFDSFTRGRYG---HPLQNRPLTPREAAR 288

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKRS 1557
             QGFPDS  F GS Q    QIGNAVPP LA A+  ++K+ + +  S
Sbjct: 289  LQGFPDSVNFQGSRQEVRYQIGNAVPPPLAKAVAEQIKKVLSNIES 334


>gi|418062114|ref|ZP_12699924.1| DNA-cytosine methyltransferase [Methylobacterium extorquens DSM
            13060]
 gi|373564331|gb|EHP90450.1| DNA-cytosine methyltransferase [Methylobacterium extorquens DSM
            13060]
          Length = 483

 Score =  117 bits (294), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 134/491 (27%), Positives = 201/491 (40%), Gaps = 108/491 (21%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            A LD+F+GCGG S G Q +G      ++E +  A      N PE++              
Sbjct: 32   AVLDLFSGCGGFSLGFQAAGFRIAG-SVEIDPSARATHAANFPEAVHF------------ 78

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN-QSTW 1240
                   D  +T++  E+ A L        P    V    GGPPCQ ++ + R   +S  
Sbjct: 79   -------DDATTADPVEVGACL-----AGAPFTVLV----GGPPCQAYARVGRAKLRSVA 122

Query: 1241 SKVQCEM----ILAF---LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            ++    +    +L F   L F +  +P    +ENV + +S         T  +L+ +GY 
Sbjct: 123  ARQDAHLDDPRVLLFRHWLRFVEAIRPHAVAMENVLDCLSVGGRNVMEETAEALVSLGYV 182

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQ---- 1348
             R+ I+ A  +GV Q R RAF+ A        P +PEP      P  K  L   +     
Sbjct: 183  PRYTIMNAVHYGVPQMRDRAFLLAYRQDLGVEPVFPEPTRAHDLP--KGYLHSRHVATSG 240

Query: 1349 --------YSAVRSTANGAPFRAMTVRDTIGDLP----AVGNGASK------TIMEYQND 1390
                    +   R   +G P  A T  + IGDLP    +   GA+K       +  Y+ D
Sbjct: 241  AGAAASRFFVPPRHPLSGLP-PATTAGEAIGDLPRFAGSKAAGATKGRRSTGDLAAYRAD 299

Query: 1391 PV-SWFQKRIRGNM--AVLTDHISKEMNELNLIRCQKIPKRPGADW-------------- 1433
               S +  R+R        + H+++ +   + + C  +P  PG+++              
Sbjct: 300  VAPSEYASRLRSGAPDGGTSGHVTRAIGR-DAVLCGLMP--PGSEYPAAHAIAERLLSEE 356

Query: 1434 --------HDLPD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSIT 1484
                      +PD E   L  G V    P   PN       WK +  R       PT  T
Sbjct: 357  IAGRAAMGRPVPDCELPALRAGIVPPHPPHTFPN-----RWWKLVADR-------PTR-T 403

Query: 1485 DPQPMGKVGMC-FHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
                +GK G    H D  Q R+++VRE AR Q FPD ++F G++ +  RQIGNAVPP LA
Sbjct: 404  LLAHLGKDGYSQIHYDDAQGRVISVREAARLQSFPDGFRFEGTMNNAFRQIGNAVPPLLA 463

Query: 1542 FALGRKLKEAV 1552
             A+ R L  A+
Sbjct: 464  EAIARSLAAAL 474


>gi|428205227|ref|YP_007089580.1| DNA-cytosine methyltransferase [Chroococcidiopsis thermalis PCC 7203]
 gi|428007148|gb|AFY85711.1| DNA-cytosine methyltransferase [Chroococcidiopsis thermalis PCC 7203]
          Length = 434

 Score =  117 bits (294), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 184/440 (41%), Gaps = 82/440 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      A+E +       + N P        C V+ ++V E 
Sbjct: 11   VDLFAGVGGMTLGFEQAGFDVLA-AVEIDPIHCATHQFNFP-------FCKVLCQSVTE- 61

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                    +++E    +A  D ++          D + GG PCQGFS + +         
Sbjct: 62   -------TTSTEVRSCSAIGDRDI----------DVVFGGSPCQGFSLIGK---RALDDP 101

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILEA 1301
            +  ++  FL      +P+YF+ ENV      N  Q     +A+    GY+V+  + +L A
Sbjct: 102  RNALVHHFLRLVLELKPKYFVFENVPGLTIGNHRQFLSELIAAFGAGGYEVKTDYRVLNA 161

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R R F+        LPE+P+P+        K  LS   +Y          P 
Sbjct: 162  ANYGVPQDRARLFLLGCRYGLPLPEYPQPI-------TKPSLSRKSKYILNLPHLKPTP- 213

Query: 1362 RAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
               T+ D + DLP V           TI+EY     S++  ++R   A   ++      +
Sbjct: 214  ---TIWDALCDLPVVEMYPELFQQDWTIVEYGKP--SYYSSKMRSIFANNDNYAGDRHFD 268

Query: 1417 LNLIRC--------QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG 1468
            L L+            I +    +W ++  E +         L P  + NT +       
Sbjct: 269  LRLLTSSLRTRHGDNSIARFATTNWGEV--EPIS----HFYKLAPEGICNTLRA------ 316

Query: 1469 LFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
              G     G F    T P+P+       HP + R +TVRE AR   +PD ++FH +  H 
Sbjct: 317  --GTASNLGAF----TSPRPI-------HPYKPRCITVREAARLHSYPDWFRFHQTKWHG 363

Query: 1529 HRQIGNAVPPTLAFALGRKL 1548
             RQ+GN+VPP LA A+ R++
Sbjct: 364  FRQVGNSVPPLLAQAIAREI 383


>gi|186683211|ref|YP_001866407.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|14594714|gb|AAK68647.1| cytosine-specific DNA methyltransferase [Nostoc punctiforme PCC
            73102]
 gi|186465663|gb|ACC81464.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 421

 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 187/434 (43%), Gaps = 75/434 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG++ G +Q+G      ++E +       + N P        C+V+ ++V++
Sbjct: 12   AVDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHEFNFP-------YCSVLCQSVVD 63

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G  E+  S S+  +                 ++D +  G PCQGFS + +        
Sbjct: 64   TTG--EEIRSRSKIGD----------------REIDVVICGSPCQGFSLIGK---RVVDD 102

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             +  ++  F       +P++F++ENVR        +  +  ++     GY+V   + IL 
Sbjct: 103  PRNSLVFHFHRLVFELKPKFFVMENVRGITVGEHKKILQSLISEFKIYGYKVEENYQILN 162

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV QSR+R F+  A     LP++P+P+   A P        N   S   S    +P
Sbjct: 163  AANYGVPQSRERLFLIGAREDVELPKYPQPITKPALP--------NNLTSKKISNIPLSP 214

Query: 1361 FRAMTVRDTIGDLPAVGN-----GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                TV D I DLP + N          + EY+    S + + +RG   +  D+  K   
Sbjct: 215  ----TVWDAIKDLPEIENYPELVARDWVVGEYEKP--SNYARVLRGLKCLKNDYSYKREY 268

Query: 1416 ELNLIRCQKIPKRPGADWHDLPD----EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            +L ++      K          +    ++ K+S  +   L P  + NT +         G
Sbjct: 269  DLRILSSSLRTKHSAETIQRFQETEQGDREKIS--RFYKLHPAGVCNTLRA--------G 318

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
               + G+F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ
Sbjct: 319  TDKYRGSF----TSPRPI-------HPFTPRCITVREAARLHSYPDWFRFHVTKWHGFRQ 367

Query: 1532 IGNAVPPTLAFALG 1545
            +GN+VPP LA A+ 
Sbjct: 368  VGNSVPPLLAKAVA 381


>gi|312901967|ref|ZP_07761229.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0470]
 gi|311290903|gb|EFQ69459.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0470]
          Length = 412

 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 196/452 (43%), Gaps = 69/452 (15%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK-------LNHPESLMLINNC 1173
            +  +D+F+GCGGL+EG +    +     IE ++ A  + +       +   + L + N+ 
Sbjct: 1    MNIIDLFSGCGGLTEGFRIKQFNMV-CHIEMDKDACNSLRTREAYQYMKEKKDLSMYNSY 59

Query: 1174 NV--ILRAVMEKCGDAEDCVSTSEAAELAASLDENVIN---NLPLPGQVDFINGGPPCQG 1228
             +  I R  + K     + ++     E++ S   N+I    +L     +D I GGPPCQ 
Sbjct: 60   LLGKIQRDELYKSIPI-NLMNKIINCEISCSTINNLIKKIIDLSDGETIDGIIGGPPCQA 118

Query: 1229 FSGMNRFNQSTWSKVQCEMILAFLSFADY---FQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
            +S + R  ++   K + E I  +  ++ +   F P++F+ ENV+  +S+ K Q     L 
Sbjct: 119  YSTIGR-ARNEKKKTEDERIYLYKYYSKFLEQFNPKFFIFENVKGLLSY-KDQYNEKLLP 176

Query: 1286 SLLE----MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
             +++    +GY + + I+ +  + V Q R+R FI+                     +LKI
Sbjct: 177  KIIQEFESIGYDISYKIINSAEYEVPQKRERLFIFGIRK-----------------DLKI 219

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
              +  +Q  A   T  G     + ++D   DLP + +G  K        P  + ++ ++ 
Sbjct: 220  SANIFFQELA---TEKGI---GIKIKDLFNDLPEMKSGEEKNYYSKYKAPSKFVRENLKN 273

Query: 1402 NMAVLTDHISKEMNELN--LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
            N   LT ++S+  NE +  + R   I K+ G +          L   +        LP  
Sbjct: 274  NDTALTYNVSRFNNERDREIYRLVAIAKKNGKN----------LKYNE--------LPKH 315

Query: 1460 AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFP 1516
             K H        R         S T    + K G  + HPD  Q+R +TVRE AR Q FP
Sbjct: 316  LKSHKNETNFLDRYKSLSENDVSHTMVAHISKDGHYYIHPDIKQNRSITVREAARIQTFP 375

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            D + F  S    +RQIGNAVP  L+  + + +
Sbjct: 376  DDFYFESSRTAAYRQIGNAVPVVLSKKIAKSI 407


>gi|421558133|ref|ZP_16004018.1| cytosine-specific methyltransferase [Neisseria meningitidis 92045]
 gi|402338905|gb|EJU74134.1| cytosine-specific methyltransferase [Neisseria meningitidis 92045]
          Length = 333

 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 175/436 (40%), Gaps = 108/436 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GGLS G +Q+G      ++E E    + ++ N P   +L           
Sbjct: 5    LTYIDLFSGAGGLSLGFEQAGFQQL-LSVEMESDYCQTYRTNFPHHQLL----------- 52

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFSGMNRFNQST 1239
                             +L    ++++IN L   GQ VD I GGPPCQGFS   +  ++ 
Sbjct: 53   ---------------QKDLTTLTEQDLINCLN--GQAVDLIIGGPPCQGFSMAGKIGRTF 95

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  +   F+      QP +F++ENV    + N G+T    + +   +GY V   IL
Sbjct: 96   TDDPRNHLFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKIL 155

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FGV Q R R           +  +PEP+ +                          
Sbjct: 156  SAADFGVPQIRSRVIFIGRRDKGKI-SFPEPLQI-------------------------- 188

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                 TV   IG  P +  G S       N  V+  +           +H ++ + ++  
Sbjct: 189  --SHQTVGSAIGHFPKLAAGES-------NPHVANHEA---------MNHSAQMLEKMAF 230

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            ++        G + +D+P E ++  TG +   I         R+N  K            
Sbjct: 231  VKN-------GGNRNDIP-EPLRPKTGDIRKYI---------RYNSNKP----------- 262

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
               IT     G +   FH +Q+R LTVRE A  Q FPD++ F GS   + +Q+GNAVPP 
Sbjct: 263  AVCIT-----GDMRKVFHYEQNRALTVRELAALQSFPDNFIFCGSKIAQQQQVGNAVPPL 317

Query: 1540 LAFALGRKLKEAVESK 1555
            LA A+   + +  E++
Sbjct: 318  LAKAIAESILKMSENE 333


>gi|313667095|gb|ADR72992.1| M2.BspMI [Bacillus sp. M(2010)]
          Length = 353

 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 180/437 (41%), Gaps = 101/437 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GGL   L+++G   T  + E  E A E  K N PE  +            
Sbjct: 2    LTAVDLFSGAGGLLLALKEAGYQ-TLLSCEINESACETHKYNFPEIPLF----------- 49

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQS 1238
                GD ++ ++  +  E     D            VD + GGPPCQG+S  G  RF  +
Sbjct: 50   ---QGDIQN-LTEDKIIEYTKGTD------------VDLVVGGPPCQGYSMFGKRRFINT 93

Query: 1239 TWSKVQ----CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY-Q 1293
                 Q     +++  ++      +P+YF +ENV+ F+S + GQ  +  +    E+GY  
Sbjct: 94   QGYDPQEDPRNKLVYEYIRVVKILRPKYFFMENVKGFLSLDNGQFLKTVIQEFEELGYDN 153

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            ++  ++ A  FGV Q R R F+        +  +P P H    PE  + L          
Sbjct: 154  IKCEVVCAADFGVPQQRYRMFMIGNRVGKPV-NFPSPSHY---PEDSLFLP--------- 200

Query: 1354 STANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS-- 1411
                    +  TV D I DL  +G   S  +  Y                +V+ + +S  
Sbjct: 201  --------KYTTVGDAIMDLELLGPEVSNHVPLYHK--------------SVVAERMSYV 238

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            KE ++LN+   +++P+      H     +V   TG+V                 +  ++ 
Sbjct: 239  KEGDKLNV---EELPE------HLAIATRVDSKTGKV---------------RNYSHIYK 274

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            RL    N P     P   G      HP  +R LTVRE AR Q FPD + F G+ Q +  Q
Sbjct: 275  RL--HRNRPAWTMVP---GHNAFPIHPTLNRTLTVREAARIQSFPDHHVFTGTRQEQCIQ 329

Query: 1532 IGNAVPPTLAFALGRKL 1548
             GNAVPP +A    +++
Sbjct: 330  AGNAVPPKMALPFFKQI 346


>gi|443313327|ref|ZP_21042939.1| DNA-methyltransferase Dcm [Synechocystis sp. PCC 7509]
 gi|442776732|gb|ELR87013.1| DNA-methyltransferase Dcm [Synechocystis sp. PCC 7509]
          Length = 413

 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 161/362 (44%), Gaps = 58/362 (16%)

Query: 1218 DFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277
            D I GGPPCQGFS +    Q      +  + L F  + +  +P+ F++ENV+  +S    
Sbjct: 75   DIIIGGPPCQGFS-IAGSAQKDPKDPRNSLFLNFAQWINCLRPKAFIMENVKGLLSRKNT 133

Query: 1278 Q---TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
            +      +   +  E+GY V   +L +  +GV Q R+R FI   +   TL   P   H  
Sbjct: 134  EGEKVINIIKKTFEEIGYFVEIWLLNSAEYGVPQIRERVFIVGNTLGKTLGT-PLKTHSL 192

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
                +K     ++Q S++ +T     F ++++ D I DLP++     K    Y + P + 
Sbjct: 193  NLSNMK-----DFQLSSLENTG---LFPSLSLWDAISDLPSLNAREGKEEQSYISLPQNI 244

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
            +Q  IR +  VL +H++ E ++  + R ++I  + G    D+P                 
Sbjct: 245  YQNWIRNSSQVLYNHVAMEHSQRVVERFKQI--KWGESSSDVPK---------------- 286

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-----HPDQDRILTVREC 1509
               N + R     G    + ++ N    +   +P   +   F     HP QDR LT RE 
Sbjct: 287  ---NYSARRRSGNGELSMISYDQN-NRRLHPYKPSHTIAASFYANFVHPFQDRNLTAREG 342

Query: 1510 ARSQGFPDSYQFHGS---IQHK--HR-------------QIGNAVPPTLAFALGRKLKEA 1551
            AR Q FPD Y+F G    + HK  HR             Q+GNAVPP LA A+   LKE 
Sbjct: 343  ARIQSFPDKYRFLGKKTVVSHKLLHREERFNEQFLCQYNQVGNAVPPILAKAIALHLKEQ 402

Query: 1552 VE 1553
            ++
Sbjct: 403  LK 404


>gi|240142441|ref|YP_002966951.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens AM1]
 gi|240012385|gb|ACS43610.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens AM1]
          Length = 463

 Score =  117 bits (292), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 201/489 (41%), Gaps = 104/489 (21%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            A LD+F+GCGG S G Q +G      ++E +  A      N PE++              
Sbjct: 12   AVLDLFSGCGGFSLGFQAAGFRIAG-SVEIDPSARATHAANFPEAVHF------------ 58

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN-QSTW 1240
                   D  +T++ AE+ A L        P    V    GGPPCQ ++ + R   +S  
Sbjct: 59   -------DDATTADPAEVGACL-----AGAPFTVLV----GGPPCQAYARVGRAKLRSVA 102

Query: 1241 SKVQCEM----ILAF---LSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
            ++    +    +L F   L F +  +P    +ENV + +S         T  +L+ +GY 
Sbjct: 103  ARQNAHLDDPRVLLFRHWLRFVEAIRPHAVAMENVLDCLSVGGRNVMEETAEALVSLGYV 162

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQ---- 1348
             R+ I+ A  +GV Q R RAF+ A        P +PEP      P  K  L   +     
Sbjct: 163  PRYTIMNAVHYGVPQMRDRAFLLAYRQDLGVEPVFPEPTRAHDLP--KGYLHSRHVATSG 220

Query: 1349 --------YSAVRSTANGAPFRAMTVRDTIGDLPAVGN----GASK------TIMEYQND 1390
                    +   R   +G P  A T  + IGDLP +      GA+K       +  Y+ D
Sbjct: 221  AGAAASRFFVPPRHPLSGLP-PATTAGEAIGDLPRLAGSKAAGATKGRRSTGELAAYRAD 279

Query: 1391 PV-SWFQKRIR--GNMAVLTDHISKEMNELNLIRCQKIP---KRPGAD------------ 1432
               S +  R+R  G     + H+++ +   + + C  +P   + P A             
Sbjct: 280  VAPSEYASRLRSGGPDGGTSGHVTRAIGR-DAVLCGLMPSGSEYPAAHAIAERLLSEEIA 338

Query: 1433 -----WHDLPD-EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDP 1486
                    +PD E   L  G V    P   PN       WK +  R       PT  T  
Sbjct: 339  GRAAMGRPVPDCELPALRAGIVPPHPPHTFPN-----RWWKLVADR-------PTR-TLL 385

Query: 1487 QPMGKVGMC-FHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFA 1543
              +GK G    H D  Q R+++VRE AR Q FPD ++F G++ +  RQIGNAVPP LA A
Sbjct: 386  AHLGKDGYSQIHYDDAQGRVISVREAARLQSFPDGFRFEGTMNNAFRQIGNAVPPLLAEA 445

Query: 1544 LGRKLKEAV 1552
            + R L  A+
Sbjct: 446  IARSLAVAL 454


>gi|219848287|ref|YP_002462720.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219542546|gb|ACL24284.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 362

 Score =  117 bits (292), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 176/420 (41%), Gaps = 88/420 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC-NVILRAVME 1182
            +D+FAGCGG++ G +  G +    A+E++    + + LNHPE  + + +  ++    +M 
Sbjct: 10   IDLFAGCGGVTTGFKAKGFNVLA-AVEFDPVTAQTYHLNHPEVALYVQDIRDISPNEMMA 68

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
            +C                  L+          G +  ++   PCQ FS  NR+  +    
Sbjct: 69   RC-----------------RLER---------GHLTVLSVCAPCQPFSKQNRYRHA---D 99

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV-RFGILEA 1301
             +  +IL  + F + F P +  +ENV      +        +  L ++GY +    I++A
Sbjct: 100  ERASLILETVRFVEAFHPLFLFIENVPGLRQHS--DILDTLVGDLEKLGYTMSEPAIVDA 157

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R+R FI   +  D     PE  H  A+P   + L                  
Sbjct: 158  VKYGVPQFRRR-FILLGTCLDRALRIPEETH--ASPHEAVRLGKQ--------------- 199

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
              +TV+D    L ++  G          DP+                H +++   L+L R
Sbjct: 200  EWLTVKDAFAGLQSLHAGEQSA-----TDPL----------------HKARKHTPLSLER 238

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
             + IP   G     LP E ++LS          C  N   RH  +  ++GRLD+E    T
Sbjct: 239  LKHIPHN-GGSRDSLPIE-LQLS----------CHRN--GRHGGYHDVYGRLDFERPANT 284

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
              T    + K G   HP  DR +T RE AR Q FPD+Y+F+GS +    QIGNAVP  LA
Sbjct: 285  LTTGCTNVTK-GRFAHPTSDRAITPREAARLQTFPDTYRFYGSYEKISAQIGNAVPVKLA 343


>gi|34451619|gb|AAQ72366.1| TspRI methylase [Thermus sp. R]
          Length = 431

 Score =  117 bits (292), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 92/434 (21%)

Query: 1108 EVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167
            +V ++     E  L  +D+F+G GG S G +Q+G  S    ++    A + F  +HP + 
Sbjct: 54   QVLRRSSLRDEGRLILVDLFSGAGGFSVGFEQAGFVSA-LGLDIYTVAAKTFMEHHPRAG 112

Query: 1168 MLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQ 1227
             ++              GDA   V+     E    L  +V+             GG PCQ
Sbjct: 113  FIL--------------GDAR-AVTPEMLLEALNGLRPHVVT------------GGVPCQ 145

Query: 1228 GFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
             FS  NR  +      +  +   F+  A +  P   ++ENV    S   G+     + ++
Sbjct: 146  RFSLTNR--KRNDEDPRNYLFREFIRLARFLDPDVLIVENVSGIRSAANGKFVLEIVRAM 203

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             E GY+    +L A  FGV Q RKR F     P      WP P H               
Sbjct: 204  EEAGYRAHVEVLNAADFGVPQHRKRIFFVGVRPGIEF-RWPRPTH--------------- 247

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
                        P+  ++V + IGDLP +G G S    EY   P + +Q+R+R    +L 
Sbjct: 248  ------GPLGEHPW--VSVWEAIGDLPPLGPGESA--HEYHLPPQTDYQRRMREGAVLLG 297

Query: 1408 DHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
            +H S              PK P               T +++   P   P   K   +  
Sbjct: 298  NHES--------------PKHPKG-------------TSEMIANTPPGEPMYEKFRQRI- 329

Query: 1468 GLFGRLDWEGNFPTSITDP-QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
                RL  +   PT +    +P  + G   HP Q R LTVRE AR Q FPD   FHG I 
Sbjct: 330  ----RLHPDRPSPTIVAGGIRPQFQFG---HPTQPRGLTVRELARLQSFPDVVYFHGGIV 382

Query: 1527 HKHRQIGNAVPPTL 1540
                Q GNAVPP +
Sbjct: 383  QGRVQTGNAVPPLM 396


>gi|379011713|ref|YP_005269525.1| putative DNA methylase [Acetobacterium woodii DSM 1030]
 gi|375302502|gb|AFA48636.1| putative DNA methylase [Acetobacterium woodii DSM 1030]
          Length = 347

 Score =  117 bits (292), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 172/438 (39%), Gaps = 101/438 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +   D F+GCGG S G +++G       I+ +  A E F+ N PE+  +    N  +R +
Sbjct: 5    IKVYDFFSGCGGASSGFRKAGFE-IALGIDIDNDASETFRQNFPEAEFI----NEDIRNL 59

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            M +  D  + V T E+ +L                      G  PCQ FS  NR    T 
Sbjct: 60   MPE--DISEYVDT-ESKKLFC--------------------GCAPCQPFSKQNR--NKTG 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT-FRLTLASLLEMGYQVRFGIL 1299
              ++  ++  F  F D++ P Y  +ENV    +F  G +     +  L E GY+++  ++
Sbjct: 95   EDMRINLLDEFYRFIDFYLPDYLFIENVPGIQNFKMGGSPLESFVHKLKECGYKIKTQVI 154

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FGV Q RKR  +  A   +   E+P P H                           
Sbjct: 155  AASDFGVPQIRKRLILIGALNKEV--EFPSPTH-----------------------GENR 189

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                    D + DLP +  G +        DP                DH +  + E NL
Sbjct: 190  SLPETVFSDWVYDLPLLEAGETDP-----EDP----------------DHCAAALTEKNL 228

Query: 1420 IRCQKIPKRPG-ADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            +R +  P+  G  DW D     +KL              +  K H     ++GRL ++  
Sbjct: 229  MRIRATPEGGGREDWID----DLKL--------------DCHKNHIGHTDVYGRLSYDKK 270

Query: 1479 FPTSITD--PQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
              T  T       G+ G   HP +DR L+VRE A  Q F  ++ F G +  K +Q+GNAV
Sbjct: 271  CSTLTTKCISYSNGRYG---HPVEDRALSVREAACLQTFDRTFAFAGKLGSKAKQVGNAV 327

Query: 1537 PPTLAFALGRKLKEAVES 1554
            PP LA+  G    E   S
Sbjct: 328  PPLLAYNFGIVFNEMERS 345


>gi|46580156|ref|YP_010964.1| C-5 cytosine-specific DNA methylase [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|387153409|ref|YP_005702345.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
 gi|46449573|gb|AAS96223.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311233853|gb|ADP86707.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 369

 Score =  117 bits (292), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 126/431 (29%), Positives = 172/431 (39%), Gaps = 86/431 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F G GG S   +  GI     A+E    A   ++ N  E            R  +  
Sbjct: 14   VDLFCGAGGFSLAARNLGIEVVA-ALENNHYAAATYRHNFIEGSR---------RPPLLF 63

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD      + EA   AA+L          PG VD I GGPPCQGFS  +R   +     
Sbjct: 64   EGDI--LAISPEAFMQAANLT---------PGGVDIIMGGPPCQGFS-THRIKGAGIDDP 111

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF-GILEAG 1302
            +  ++L +  +    +PRYFL+ENV   +     +  +       E GY V    +L A 
Sbjct: 112  RNTLLLRYFEYVQAIRPRYFLVENVPGLLWPRHEEYLQRFYKLATEAGYHVSPPQVLNAR 171

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEW-PEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
             +GV Q+RKR FI   +   TLP+W P P H   APE           S VR+       
Sbjct: 172  DYGVPQNRKRVFILGTAGGHTLPDWPPRPTHF--APE----------SSQVRAEG----- 214

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
                       LPA    A     E  ND  +          A+  +H   EM E+    
Sbjct: 215  -----------LPAWCTAAQVFATELANDDPN----------AIHLNH-RPEMVEV---- 248

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
             +  P   G             S  Q   ++P C  N    HN  K ++GR++ +   PT
Sbjct: 249  FRSTPLNGG-------------SRQQSCRVLP-CHRN----HNGHKDVYGRINPDAPGPT 290

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
              T      K G   HP Q   +TVR  AR Q FP+++ F G I     Q+GNAVP  L 
Sbjct: 291  MTTACTNPSK-GRFLHPTQHHGITVRHAARFQTFPETFTFKGGIMAASAQVGNAVPIDLG 349

Query: 1542 FALGRKLKEAV 1552
             A+ R L  A+
Sbjct: 350  MAVIRPLLSAL 360


>gi|59802210|ref|YP_208922.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|240015148|ref|ZP_04722061.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
            DGI18]
 gi|240017596|ref|ZP_04724136.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
            FA6140]
 gi|240122219|ref|ZP_04735181.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
            PID24-1]
 gi|268593717|ref|ZP_06127884.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597838|ref|ZP_06132005.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268683185|ref|ZP_06150047.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
            SK-92-679]
 gi|291042721|ref|ZP_06568462.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398253|ref|ZP_06642458.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|385336778|ref|YP_005890725.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
            TCDC-NG08107]
 gi|2330911|gb|AAC45838.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae]
 gi|59719105|gb|AAW90510.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA
            1090]
 gi|268547106|gb|EEZ42524.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551626|gb|EEZ46645.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268623469|gb|EEZ55869.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
            SK-92-679]
 gi|291013155|gb|EFE05121.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291611516|gb|EFF40586.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317165321|gb|ADV08862.1| putative 5-methylcytosine methyltransferase [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 333

 Score =  117 bits (292), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 170/435 (39%), Gaps = 106/435 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GGLS G +Q+G      ++E E    + ++ N P   +L  +   +    
Sbjct: 5    LTYIDLFSGAGGLSLGFEQAGFQQL-LSVEMESDYCQTYRTNFPRHQLLQKDLTTLTEQD 63

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            +  C + +                            VD + GGPPCQGFS   +  ++  
Sbjct: 64   LTNCLNGQS---------------------------VDLVIGGPPCQGFSMAGKIGRTFT 96

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   F+      QP +F++ENV    + N G+T    + +   +GY V   IL 
Sbjct: 97   DDPRNHLFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILS 156

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  FGV Q R R           +  +PEP+ +                           
Sbjct: 157  AADFGVPQIRSRVIFIGRRDKGKI-SFPEPLQI--------------------------- 188

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                TV   IG  P +  G S       N  V+  +           +H ++ + ++  +
Sbjct: 189  -SHQTVGSAIGHFPKLAAGES-------NPHVANHEA---------MNHSAQMLEKMAFV 231

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            +        G + +D+P E ++  TG +   I         R+N  K             
Sbjct: 232  KN-------GGNRNDIP-EPLRPKTGDIRKYI---------RYNSNKP-----------A 263

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
              IT     G +   FH +Q+R LTVRE A  Q FPD++ F GS   + +Q+GNAVPP L
Sbjct: 264  VCIT-----GDMRKVFHYEQNRALTVRELAALQSFPDNFIFCGSKIAQQQQVGNAVPPLL 318

Query: 1541 AFALGRKLKEAVESK 1555
            A A+   + +  E++
Sbjct: 319  AKAIAESILKMSENE 333


>gi|309789600|ref|ZP_07684181.1| BsaWI methylase [Oscillochloris trichoides DG-6]
 gi|308228336|gb|EFO81983.1| BsaWI methylase [Oscillochloris trichoides DG6]
          Length = 436

 Score =  117 bits (292), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 195/466 (41%), Gaps = 90/466 (19%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
               ++F G GGLS GL+ SG      A+E  E   + ++ NHPE++++ ++   I     
Sbjct: 15   TAFEMFTGPGGLSLGLRSSGFHVVG-AVEKVESCVKTYRRNHPETIVIHDDVRNI----- 68

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN---RFNQS 1238
                 +E  +S              ++  +     VD + GGPPC+ FS      R N+ 
Sbjct: 69   ----TSEQVIS--------------IVLKVTGKKTVDLVAGGPPCETFSTAGPGIRKNRD 110

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS-----FNKGQTFRLTLASLLEMGY- 1292
                +  E+I      A   + +Y L+EN+    +       K   F   L  L + GY 
Sbjct: 111  YRDMLFQELI----RIACVLKAKYILIENIPGLQTKKGPNGEKAWIFNEILKLLHDSGYV 166

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAV 1352
              ++ +L A  +GV Q R+R FI A S       +P P H +       +L  N      
Sbjct: 167  YYKWAVLNAANYGVPQFRERLFIIATSDSSLPIIFPTPTHGYTK-----LLPWN------ 215

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG-----NMAVLT 1407
                        TV D IGDLP + NG  K    Y + P+  +Q  +RG     ++  ++
Sbjct: 216  ------------TVEDAIGDLPPLDNGEEKNF--YLSPPMKPYQYLMRGLRLEEDVFTMS 261

Query: 1408 DH--ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKL-STGQ-VVDLIPWCLPNTAKRH 1463
            +   IS+E   LNL R      RPG        E+ KL   G+ + D++    P+T    
Sbjct: 262  EASLISQENYALNLHRAPN--HRPGTI------ERFKLIRPGEGLRDIMTRLDPDTVADL 313

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGK---VGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
             + K L      + N    + +P P      +    HP Q+R +T RE AR Q FPD Y 
Sbjct: 314  QKKKILPKSWYIQRNRRILLNEPSPTVTSHCLSELLHPLQNRHITPREAARLQSFPDWYY 373

Query: 1521 FHGSI--------QHKHRQIGNAVPPTLAFALGRKLKEAVESKRST 1558
              G          Q K+ QIG+AVPP L + +G++L   +E    T
Sbjct: 374  IEGPWVVPHIMEEQDKYEQIGDAVPPLLGYVIGKQLLAGLEGLEKT 419


>gi|417862918|ref|ZP_12507968.1| DNA-cytosine methyltransferase [Agrobacterium tumefaciens F2]
 gi|338820180|gb|EGP54154.1| DNA-cytosine methyltransferase [Agrobacterium tumefaciens F2]
          Length = 614

 Score =  117 bits (292), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 170/414 (41%), Gaps = 82/414 (19%)

Query: 1145 TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLD 1204
             KWA++ +  A + F   HPE++  ++ C+V L             VS +E  E A    
Sbjct: 36   VKWALDIDVNATKTFANAHPEAV--VDCCDVSL-------------VSAAEVVERAGI-- 78

Query: 1205 ENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYF-----Q 1259
                       ++D+   GP CQ  S M  F+       +  + + F+   D F     +
Sbjct: 79   ----------EKIDWFFAGPTCQAVSTMGVFH---LDDPRNALFVHFIRLLDGFTAAGRK 125

Query: 1260 PRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS 1319
            PR+ ++ENV   V        +       E GY V   ++    +G+ Q R R FI  A+
Sbjct: 126  PRHVVMENVPGVVYGQNLVIVKELFKIFKERGYYVFADVVNMADYGLPQLRNR-FILIAT 184

Query: 1320 PHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG 1379
             ++  P +P   H   AP  K  L +                  ++V + I DL AVG  
Sbjct: 185  VNEVPPTFPRHTH---APVKKGELREY-----------------VSVSEAIADL-AVGQA 223

Query: 1380 ASKTI--MEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
              K +  + Y+  P   FQ  +R       +H    ++E+N  R   +P+  G  W D+P
Sbjct: 224  DDKAVVKLAYRGRPTR-FQSYVRDGNGFAPNHHGNHLSEVNRKRVATVPQ--GGCWKDIP 280

Query: 1438 DEKVKLSTGQVVDLIPWCLPNTAKR--HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMC 1495
                           P  LP+  +R     +  L+GRL      P+             C
Sbjct: 281  ---------------PELLPDRFRRVRLTDYATLYGRLHEAS--PSYTISAGFNNVTSGC 323

Query: 1496 F-HPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            F HP  DR LTVRE AR QGF DS++F G  + ++RQ+GNAVPP     L + L
Sbjct: 324  FTHPIHDRALTVREGARLQGFRDSFEFLGPKEAQYRQVGNAVPPFFMMQLVQHL 377


>gi|407473320|ref|YP_006787720.1| modification methylase Sau96I [Clostridium acidurici 9a]
 gi|407049828|gb|AFS77873.1| modification methylase Sau96I [Clostridium acidurici 9a]
          Length = 429

 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 141/331 (42%), Gaps = 80/331 (24%)

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
            ++D ++GG PCQ FS     N+      +  M   +    D  +P+ FL ENV+  VS +
Sbjct: 168  EIDLLSGGYPCQTFSYAG--NKKGLEDTRGTMFYYYAQILDQLKPKVFLAENVKGLVSHD 225

Query: 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVF 1334
             G+T +  +    E+GY++++ +L+A  +GV+Q R+R  I       D   ++P+P    
Sbjct: 226  NGRTLQTMIDVFSELGYKIQWKVLKALDYGVAQKRERIVIVGIRKDIDIEYKFPKP---- 281

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
                        Y+Y  V             ++D + D+P + +GA              
Sbjct: 282  ------------YEYKPV-------------LKDALKDVP-ISDGAK------------- 302

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
                          + SK+   L+L+        PG  W DLP+E  K   G+       
Sbjct: 303  --------------YPSKKKAVLDLV-------PPGGYWRDLPEEIAKEYMGK------- 334

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
                +        G+  R+ W+   P       P  K     HPD+ R   VRE AR Q 
Sbjct: 335  ----SYYSGGGRTGMARRISWDE--PCLTLTCSPAQKQTERCHPDETRPFRVREYARIQS 388

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            FPD ++FHGS   +++QIGNAVP  LA A+G
Sbjct: 389  FPDEWEFHGSTNQQYKQIGNAVPVELAKAVG 419


>gi|352094116|ref|ZP_08955287.1| DNA-cytosine methyltransferase [Synechococcus sp. WH 8016]
 gi|351680456|gb|EHA63588.1| DNA-cytosine methyltransferase [Synechococcus sp. WH 8016]
          Length = 680

 Score =  116 bits (291), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 198/461 (42%), Gaps = 90/461 (19%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS GL ++G      A +             P+S+          R    
Sbjct: 49   AVDLFSGAGGLSLGLHRAGFEVVL-ACDI-----------RPDSI-------ATHRHHFG 89

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ----- 1237
             C +  D       A+L   L+          G+V  + GGPPCQ FS   R+ +     
Sbjct: 90   GCSEQCDLSDPEVLAQLCRQLNAG--------GEVALVAGGPPCQPFSRNIRWRKHDDDV 141

Query: 1238 ----STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ 1293
                   ++ + E+  +FL+  +   PR FL+ENV +       + FR  ++     GY+
Sbjct: 142  IEQHKELNEGRRELWESFLTVVEGVMPRAFLMENVPDIAQTGDQEVFRGIVSRAEAAGYR 201

Query: 1294 VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR 1353
            V   ++ A   GV Q R R FI                   A   L     ++Y    V 
Sbjct: 202  VHARLVHAWEHGVPQLRPRLFI-------------------AGTRLPNAKGNSYCSPLVW 242

Query: 1354 STANGAPFR-AMTVRDTIGDLPAV-GNGASK--TIMEYQNDPVSWFQKRIRGNMAV---- 1405
               + +    A+++ + IGDLP + G+   K     +Y+  P + +QK +R  + V    
Sbjct: 243  PEPSCSSLEEAVSLEEAIGDLPELKGDWWEKWNETCDYRG-PGNAYQKLMRSWLPVDRDV 301

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            L DHI++++   +L   Q + +  G  +H+L +E+ +           + + + AKR  +
Sbjct: 302  LHDHITRKVRGDDLETFQLM-RDTGLRYHELSEEQRR-----------YAVTSRAKREGK 349

Query: 1466 WKGLFGRLDWEGNFPTS----------ITDPQPMGKVGMCF-HPDQDRILTVRECARSQG 1514
               L  R D E +F             +T    M K G  + HP Q+R L++RE AR Q 
Sbjct: 350  ---LLNRKDRESSFSNKYNILKGKEPCLTVTAHMAKDGYWYIHPQQNRTLSIREAARVQS 406

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            FPD ++FHG+  ++  Q+G AV P +   LGR + +A++ +
Sbjct: 407  FPDGFRFHGTPSNRFHQVGEAVAPLVGEVLGRAMLDAIKQR 447


>gi|197105892|ref|YP_002131269.1| DNA (cytosine-5-)-methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196479312|gb|ACG78840.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
            zucineum HLK1]
          Length = 508

 Score =  116 bits (291), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 129/493 (26%), Positives = 205/493 (41%), Gaps = 98/493 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN-HPESLMLINNCNVILRAVME 1182
            LD+F+GCGGLS G    G      A+E++  A  +   N HPE                 
Sbjct: 36   LDLFSGCGGLSLGFHAQGFDIVA-AVEFDPAAAASHGANFHPED---------------P 79

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
            + G   D ++     +LA  LD       P+   VD + GGPPCQ F+ + R      ++
Sbjct: 80   RHGRPRD-ITRLTPEQLALELDLG-----PVEQAVDVLVGGPPCQAFARVGRSKLREIAE 133

Query: 1243 --------VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
                     +  + L +L +   F P   ++ENV + ++         T   L E+GY V
Sbjct: 134  HPEAFRLDARARLYLEYLRYVQAFLPLAVVMENVPDVLNHGGQNVAEETRTFLEELGYDV 193

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAP---------ELKIMLS 1344
            ++ +L A  +GV Q R+R  + A      +   +P P H    P          LK++  
Sbjct: 194  KYSLLNAAFYGVPQMRERMILIATRRELGVEIRFPAPTHHIELPPGYAGSRQVALKLL-- 251

Query: 1345 DNYQYSAVRSTANG-----APFR----AMTVRDTIGDLPAVGN--------GASK--TIM 1385
                  A+  TA G     +P R    A+T  + +GDLP +          GA +   ++
Sbjct: 252  ---NQGALLDTAPGYQPALSPDRSLPSAVTAAEALGDLPEITGHLRGEIRRGARRFDALV 308

Query: 1386 EYQNDPVSWFQKRIRG-----NMAVLTDHISKEMNELNLIRCQKI--PKRPGADWHDLPD 1438
             Y ++P S +   +R      N   + DH+ +      L R  K+    RPG  + +   
Sbjct: 309  RYPHEPRSDYATLMRSWPSFENAEGVRDHVIRY-----LPRDWKLFGRLRPGDQYPEAHA 363

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHN--QWKGLFGRLDWE---GNFPTSITDPQP----- 1488
            E V++    + DL    +   A R +  +W+ L   +      G FP      +P     
Sbjct: 364  EAVRMFNEALRDLQ---VQGRAPRPHSAEWRQLRASIVPPYDVGKFPNKWRKMEPDLPAR 420

Query: 1489 --MGKVG------MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
              M  +G      + +   Q R ++VRE AR Q FPD + F G++    RQIGNAVPP L
Sbjct: 421  TLMAHLGKDSYSHIHYDSAQSRTISVREAARLQSFPDGFVFKGAMNAAFRQIGNAVPPLL 480

Query: 1541 AFALGRKLKEAVE 1553
            A A+  ++  A +
Sbjct: 481  ARAVAGEIAAAFQ 493


>gi|404482465|ref|ZP_11017692.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium OBRC5-5]
 gi|404344626|gb|EJZ70983.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium OBRC5-5]
          Length = 428

 Score =  116 bits (291), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 183/448 (40%), Gaps = 81/448 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES-LMLINNCNVILRAVME 1182
            +D+FAG GGLSEG  Q+G       +E  E A +  +       L   NN +V  + +  
Sbjct: 13   IDLFAGAGGLSEGFLQAGFKPVA-HVEMNEFAAKTLETRSAYYYLKGTNNLDVYKKYLNG 71

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPG---------------QVDFINGGPPCQ 1227
            K     + +     A +  ++    +++  LPG               ++D I GGPPCQ
Sbjct: 72   KL--TREKLMQHVPASITKTIINEAMSDDTLPGIFKKIDGIMKIRGIEKIDVIVGGPPCQ 129

Query: 1228 GFSGMNRFNQSTWSKV------QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
             +S + R  QS+  +V      +  +   +  F   +QPR F+ ENV    S N G T++
Sbjct: 130  AYSLVGR-AQSSHMEVPMADDPRNYLYKLYARFLKRYQPRMFVFENVTGIESANGGTTWK 188

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFAAPEL 1339
                 L  +GY++      A  FGV Q+R+R  I  W      + PE+ E       P+ 
Sbjct: 189  NIKKYLKRVGYEIECREQNAKTFGVLQNRRRMIIVGWLKQSGLSYPEFAE-----ITPD- 242

Query: 1340 KIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF--QK 1397
                                      V D   DLP +  G S    +Y     S +  Q 
Sbjct: 243  ------------------------AIVNDLFRDLPKLHPGESSE--KYGRAKASKYVTQY 276

Query: 1398 RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLP 1457
             IR +  +LT H  +     N+ R  KI +R    W+   D   +L+           LP
Sbjct: 277  GIRADGDILTHHNCRP----NIDRDIKIYRRAIELWN---DGHKRLNYND--------LP 321

Query: 1458 NTAKRHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQ 1513
            +  K H        R    EG+ P   T    + K G  F HPD  Q R +TVRE AR Q
Sbjct: 322  DELKTHKNRHSFTDRFKVVEGDEPCCHTILAHLSKDGHYFIHPDINQCRSITVREAARIQ 381

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
             FPDSY F G    +  QIGNAVPP +A
Sbjct: 382  SFPDSYFFEGPRTSQFVQIGNAVPPLMA 409


>gi|422323789|ref|ZP_16404828.1| hypothetical protein HMPREF0005_01193 [Achromobacter xylosoxidans
            C54]
 gi|317401187|gb|EFV81833.1| hypothetical protein HMPREF0005_01193 [Achromobacter xylosoxidans
            C54]
          Length = 571

 Score =  116 bits (291), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 193/468 (41%), Gaps = 85/468 (18%)

Query: 1096 KKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPA 1155
            ++G+  +  DEL+    G       L  LD+F+GCGG S G + +G+   K A++  E A
Sbjct: 16   RQGRNGQRMDELKTILAGNEKTSTPLTFLDLFSGCGGFSLGFEAAGL-VCKAAVDSNEAA 74

Query: 1156 GEAFKLNHPE-SLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP 1214
             E FK NH + +L L+ +        ++K               L  S+  NV       
Sbjct: 75   IETFKANHTKGALGLVRDLTKFSPKDLDKL--------------LGGSVRINV------- 113

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWS-----KVQCEMILAFLSFADYFQPRYFLLENVR 1269
                 I GGPPCQGFS     + S          + ++   FL F  Y+QP  F++ENV 
Sbjct: 114  -----IVGGPPCQGFSKARMVDGSNHGGRLVHDARRDLYQEFLRFVKYYQPSVFVMENVP 168

Query: 1270 NFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPE 1329
               S   G+ F        E+GY+V    +EA  FGV Q R R  I              
Sbjct: 169  GIKSAAGGEFFTRLQVESRELGYRVIPYEVEAWRFGVPQKRIRQLI-------------- 214

Query: 1330 PMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAM-TVRDTIGDLPAVGNGASKTIMEY- 1387
               +    EL + + D Y    +R T  G   + + ++ + IGDLP +  G  +    Y 
Sbjct: 215  ---IGTRRELPLFIPDRY----IRPTHGGEGLQPLVSLGEAIGDLPEICAGDERHERLYD 267

Query: 1388 --------QNDPVSWFQKRIRGNMA-VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
                    Q     +    ++ + A +LT H ++  +  ++        R  A   +  +
Sbjct: 268  SALRQAHIQKYGTRYIYDVLQADKAKILTAHSARPHSLRDM--------RDFARLREGEN 319

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-H 1497
             K  L+ G  ++  P+   N   R+ +               ++I     + K G+ F H
Sbjct: 320  SKHALARGVEMEF-PYDRENFKDRYTR--------QHRDQLCSTIV--AHLKKDGLMFIH 368

Query: 1498 PDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
            P Q R LT RE AR Q FPD++    +  +   QIGNAVPP +  A+G
Sbjct: 369  PTQMRSLTPREAARVQSFPDTFSLPEARTNSFAQIGNAVPPLVGRAMG 416


>gi|432343042|ref|ZP_19592253.1| DNA-cytosine methyltransferase [Rhodococcus wratislaviensis IFP 2016]
 gi|430771929|gb|ELB87746.1| DNA-cytosine methyltransferase [Rhodococcus wratislaviensis IFP 2016]
          Length = 418

 Score =  116 bits (291), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 180/449 (40%), Gaps = 95/449 (21%)

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC 1173
            G++       +D+FAGCGG++ G   +       A+E+   A   +  N  ES       
Sbjct: 25   GSAGSRPWTMIDLFAGCGGMTSGFVATSSFEPVMAVEFNFEAAATYAANFGES------- 77

Query: 1174 NVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGM- 1232
                                +  A++A   D ++        + D I GGPPCQGFS + 
Sbjct: 78   -------------------HTHFADIADIPDSDIP-------EADVIIGGPPCQGFSNLG 111

Query: 1233 NRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR--LTLASLLEM 1290
            +R  +   +K+  E    ++ F  +  P+ F++ENV  F S ++    +   +   LLE 
Sbjct: 112  SRDVKDPRNKLWKE----YIRFVRHAHPKVFVIENVDRFFSSSEFALLQEEASPGGLLEE 167

Query: 1291 GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
             Y +  G L A  FGV Q RKR  +   S    +P  P P H         M+ D   + 
Sbjct: 168  -YHLEAGFLLAADFGVPQRRKRTIV-IGSRIGAIP-LPTPTHARPG-----MVEDLPGWH 219

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
                          T RD +  LPAV         E  +     F +R RG       HI
Sbjct: 220  --------------TTRDVLTGLPAV-----PPTTELPDSSTLVFGERARGVFKTPDLHI 260

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKV-------KLSTGQVVDLIPWCLPNTAKR- 1462
             +   +L+L R + +P  PG    DLPD  +       K  T  V+  + W +P+   R 
Sbjct: 261  GRNPTQLSLDRYRHVP--PGGGRFDLPDHLLSRCWREKKTGTTDVMGRMRWDMPSLTIRT 318

Query: 1463 --HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
              +   KG +    W+ + P+                   DR +T  E AR Q FPDS+ 
Sbjct: 319  EFYKPEKGQYLHPQWDRDKPSRSV----------------DRPITHFEAARLQSFPDSFG 362

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            + GS     RQIGNAVPP LA AL   L+
Sbjct: 363  WCGSKIEIARQIGNAVPPMLAEALAHHLE 391


>gi|417330845|ref|ZP_12115294.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
            serovar Adelaide str. A4-669]
 gi|435855464|ref|YP_007316678.1| Dcm [Klebsiella pneumoniae]
 gi|353560791|gb|EHC27926.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
            serovar Adelaide str. A4-669]
 gi|411343027|gb|AFW18081.1| Dcm [Klebsiella pneumoniae]
          Length = 416

 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 188/445 (42%), Gaps = 100/445 (22%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GGLS G +Q+G      ++E +     A K N P        C  I R+V++
Sbjct: 6    AVDLFAGAGGLSLGFEQAGFDIMA-SVEIDPIHCSAHKYNFPM-------CKTICRSVVD 57

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G         E     + + E          ++D + GG PCQGFS + +        
Sbjct: 58   VTG---------EYVREVSGIGEK---------EIDVVIGGAPCQGFSLIGK---RALDD 96

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             + +++  ++      +P+YF+ ENV+        Q     + +  + GY V   + +L 
Sbjct: 97   DRNKLVYHYVRLVLELKPKYFVFENVKGLTVGKHKQFLVEIMDAFKDGGYDVVSDYKVLN 156

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q R+R F+        LP +PEP+                   ++R+      
Sbjct: 157  AADYGVPQDRRRLFLMGGRKGIALPSYPEPL-------------------SIRT------ 191

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDH---ISKEMNEL 1417
                TV D IGD+P     A K    +  D   W   +  G  ++ + +   + K+ ++ 
Sbjct: 192  ----TVGDAIGDIP----DAEKYPELWGRD---WVYAKF-GEQSLYSSYLHGVGKDPSDF 239

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL-------- 1469
            +  R     K   +   D  D    +S G+ V+     LP+T +  +++K L        
Sbjct: 240  SYPRIFNKDKLTCSLLTDHSD----ISRGRFVE----TLPDTVEPISRFKKLSMNGLCNT 291

Query: 1470 --FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
               G     G F    T P+P+       HP   R++TVRE AR   +PD ++FH +  H
Sbjct: 292  LRAGTASDRGAF----TSPRPI-------HPIYPRVITVREAARLHSYPDWFRFHVTKWH 340

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAV 1552
              RQ+GN+VPP LA ++G ++ + +
Sbjct: 341  GFRQVGNSVPPMLARSVGLQIMKVL 365


>gi|421539258|ref|ZP_15985420.1| cytosine-specific methyltransferase [Neisseria meningitidis 93004]
 gi|402321838|gb|EJU57309.1| cytosine-specific methyltransferase [Neisseria meningitidis 93004]
          Length = 333

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 173/436 (39%), Gaps = 108/436 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GGLS G +Q+G      ++E E    + ++ N P   +L           
Sbjct: 5    LTYIDLFSGAGGLSLGFEQAGFQQL-LSVEMESDYCQTYRTNFPHHQLL----------- 52

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFSGMNRFNQST 1239
                             +L    ++++IN L   GQ VD I GGPPCQGFS   +  ++ 
Sbjct: 53   ---------------QKDLTTLTEQDLINCLN--GQAVDLIIGGPPCQGFSMAGKIGRTF 95

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  +   F+      QP +F++ENV    + N G+T    + +   +GY V   IL
Sbjct: 96   TDDPRNHLFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKIL 155

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FGV Q R R           +  +PEP+ +                          
Sbjct: 156  SAADFGVPQIRSRVIFIGRRDKGKI-SFPEPLQI-------------------------- 188

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                 TV   IG  P +  G S       N  V+  +           +H ++ + ++  
Sbjct: 189  --SHQTVGSAIGHFPKLAAGES-------NPHVANHEA---------MNHSAQMLEKMAF 230

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            ++        G + +D+P E ++  TG +   I                      ++ N 
Sbjct: 231  VKN-------GGNRNDIP-EPLRPKTGDIRKYI---------------------RYDSNK 261

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            P         G +   FH +Q+R LTVRE A  Q FPD++ F G+   + +Q+GNAVPP 
Sbjct: 262  PAVCIT----GDMRKVFHYEQNRALTVRELAALQSFPDNFVFCGNKIAQQQQVGNAVPPL 317

Query: 1540 LAFALGRKLKEAVESK 1555
            LA A+   + +  E++
Sbjct: 318  LAKAIAESILKMSENE 333


>gi|428776676|ref|YP_007168463.1| DNA-cytosine methyltransferase [Halothece sp. PCC 7418]
 gi|428690955|gb|AFZ44249.1| DNA-cytosine methyltransferase [Halothece sp. PCC 7418]
          Length = 430

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 187/441 (42%), Gaps = 73/441 (16%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            Q+     +D+FAG GG++ G +Q+G      ++E +     A + N P   ++       
Sbjct: 5    QQKRAVAVDLFAGVGGITLGFEQAGFDVLA-SVEIDPIHCAAHEFNFPFWSVI------- 56

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
                   C D +    T +    ++ + +          ++D + GGPPCQGFS + +  
Sbjct: 57   -------CQDVKHL--TGQKIRQSSLIKDQ---------EIDVVCGGPPCQGFSLIGK-- 96

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR- 1295
                   +  ++  FL      +P+YF++ENV         Q     +    +  Y+V+ 
Sbjct: 97   -RVLEDERNALVFHFLRLVLELKPKYFVMENVAGMAIGKSQQLLNELIEKFQKNDYKVQL 155

Query: 1296 -FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             + +L A  FGV Q+R R F+       TLP++P P+   A  +               +
Sbjct: 156  PYQVLNASNFGVPQNRNRLFLLGCRSDQTLPDYPIPITQPAKSQ--------------AN 201

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGA---SKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
            + NG    + TV+D + DLP + N     ++  ++ +    S++  ++R N +V  D+  
Sbjct: 202  SINGHQPDSPTVKDALIDLPLIENYPELLTQDTVKAEFGKPSFYSNQLRQNGSVQDDYSY 261

Query: 1412 KEMNELNLI----RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
                  +L+    R Q   K        LP +   +S  +   L P  + NT +      
Sbjct: 262  PRTYNSSLLTASLRTQHTEKSMARFAETLPGKTEPIS--RFYKLHPDGICNTLRA----- 314

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
               G     G +    T P+P+       HP   R +TVRE AR   +PD ++FH +  H
Sbjct: 315  ---GTASNRGAY----TSPRPI-------HPHLPRCITVREAARLHSYPDWFRFHVTKWH 360

Query: 1528 KHRQIGNAVPPTLAFALGRKL 1548
              RQIGN+VPP LA A+  ++
Sbjct: 361  GFRQIGNSVPPLLAKAVATEI 381


>gi|374709818|ref|ZP_09714252.1| site-specific DNA-methyltransferase [Sporolactobacillus inulinus
            CASD]
          Length = 466

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 147/350 (42%), Gaps = 80/350 (22%)

Query: 1210 NLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVR 1269
            NLP+   +D I GGP CQ  S   +  +  ++ ++ E  + ++   +  +P+YF+LENVR
Sbjct: 136  NLPMGYPIDIIIGGPNCQPMSTAGK--RKGFADIRGEAFIRYIDVIEEIRPKYFILENVR 193

Query: 1270 NFVSFN-----------KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318
              +S             KG     TL    +MGY V F +  A  FG  Q R+R  +   
Sbjct: 194  GLLSVEAIFDDTNDKPVKGGVLHYTLNRFEKMGYAVSFQLYNAANFGAPQGRERVILLGK 253

Query: 1319 SPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN 1378
                 LP +  P H           S+N ++        G P +  T+RD IGD+     
Sbjct: 254  LGKKKLP-YLTPTH-----------SENGEF--------GLP-KWNTLRDAIGDI----- 287

Query: 1379 GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438
               + +  Y + P        +G     T                KIP+  G +W  L  
Sbjct: 288  --QEGVHHYVDIP--------KGRKDWYT----------------KIPE--GGNWRSLSI 319

Query: 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHP 1498
            E  K + G           N         G F RLD+    PT +T+P  + K     HP
Sbjct: 320  EDQKKAMG-----------NAYNSSGGKSGFFRRLDFNKVSPTLLTNP--LMKATDLVHP 366

Query: 1499 DQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
             + R L++ E +R QGFPD + F G I  ++RQIGNAVP  L  A+GR +
Sbjct: 367  TELRPLSIEEYSRIQGFPDDWHFCGKIVEQYRQIGNAVPTQLGEAIGRTI 416


>gi|386284381|ref|ZP_10061603.1| two-component sensor [Sulfurovum sp. AR]
 gi|385344666|gb|EIF51380.1| two-component sensor [Sulfurovum sp. AR]
          Length = 492

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 186/449 (41%), Gaps = 73/449 (16%)

Query: 1110 EKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLML 1169
            E+Q  +S+ +    +D+F G GG S G  Q G    + A + E  A E +K NHP+    
Sbjct: 105  EEQTKSSKSDKPKIIDLFCGAGGFSLGFIQEGYK-VELANDIEPVALETYKYNHPDI--- 160

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
                             + D + + +  E+  ++D +V         +D I GGPPCQ F
Sbjct: 161  -----------------STDKILSGDIKEIVNNIDNHV------DTDIDVIIGGPPCQSF 197

Query: 1230 SGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
            S  N+  Q      +  +   ++   +  QP++ L+ENVR  +     +     +     
Sbjct: 198  SSANQ--QRVIDDPRNVLYTYYVKAVEKIQPKFVLMENVRGMI-----KVADQVVEDFNR 250

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWA-----ASPHDTLPEWPEPMHVFAAPELKIMLS 1344
            +GY V + + ++  F V+Q R R          A  H+  P            E++  + 
Sbjct: 251  IGYDVEYRLFDSSEFSVAQKRVRLLYIGVNRVYAKKHNITPSQ-------LMKEVESEIK 303

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN-- 1402
            +  +Y    +  N  P    T+++T  ++    +G    I  Y+N    +  K +  N  
Sbjct: 304  NKPRYVLKDALENIKPLECPTIKNT-TEIDCELSGKKIDINIYKNKSNDYM-KLVNNNKE 361

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPK--RPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                 +H ++  NE N+    KI K  + GAD           +   + D++P+     +
Sbjct: 362  FDFTFNHKARYQNENNI----KIYKTLQQGADS----------TCESIKDIMPY-----S 402

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
             R++ +K  + +L  E     +IT    M       HP Q R LT RE AR Q FPD Y 
Sbjct: 403  HRNHVFKDKYFKL-IENEPSRTITAHMKMD-CHSHIHPSQTRSLTPREAARVQSFPDDYI 460

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            F G+    + QIGNAVPP ++    +  K
Sbjct: 461  FMGAYLKTYMQIGNAVPPLMSQVFAKIFK 489


>gi|313886494|ref|ZP_07820210.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas asaccharolytica
            PR426713P-I]
 gi|312924040|gb|EFR34833.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas asaccharolytica
            PR426713P-I]
          Length = 351

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 174/446 (39%), Gaps = 105/446 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F G GGLS GL+++G+       + ++    A++ N        NN   I + +
Sbjct: 3    IGVVDLFCGIGGLSYGLREAGLQILA-GYDLDQTCAFAYERN--------NNAQFIYKDI 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                      VS  E + L A  D            V  + G  PCQ FS    F     
Sbjct: 54   R--------MVSGKEVSTLLAETD------------VKVLAGCAPCQPFSSY-AFKNKKK 92

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               + +++  F       QP    +ENV   ++F +       ++ L + GY V    + 
Sbjct: 93   DPNKYDLLYEFGRLVKEVQPDLVTMENVSQILTFKEKPVLEDFVSLLKDEGYFVYMNKIF 152

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
               +G+ Q+RKR  +  AS    +   P P H                           P
Sbjct: 153  CPDYGIPQNRKR-LVLLASKFGEISLIP-PTH--------------------------KP 184

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               +TV+D IGDLPA+  G +      + DP+                H SK ++ LNL 
Sbjct: 185  SNYLTVKDAIGDLPALRAGEAD-----RYDPL----------------HRSKSLSPLNLK 223

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN--QWKGLFGRLDWEGN 1478
            R Q+ P   G  W D P+           DL   C     KR N   +  ++GR+ WE  
Sbjct: 224  RIQRTPY--GGGWQDWPE-----------DLRLEC----HKRENGKSFGSVYGRMVWEKP 266

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-----SIQHKHRQIG 1533
             PT  T     G  G   HP QDR +++RE A  Q FP SYQF       SI    R IG
Sbjct: 267  APTMTTLCTGYGN-GRFGHPTQDRAISIREAALLQTFPKSYQFFSDEKDVSITKASRYIG 325

Query: 1534 NAVPPTLAFALGRK-LKEAVESKRST 1558
            NAVPP L   +G   +K    SK + 
Sbjct: 326  NAVPPKLGEVIGNSIIKHLFHSKNAV 351


>gi|402571788|ref|YP_006621131.1| DNA-methyltransferase Dcm [Desulfosporosinus meridiei DSM 13257]
 gi|402252985|gb|AFQ43260.1| DNA-methyltransferase Dcm [Desulfosporosinus meridiei DSM 13257]
          Length = 380

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 183/452 (40%), Gaps = 111/452 (24%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             + +F+G  GL  GL+Q+G+   K A + ++              M  NN   +   + +
Sbjct: 4    VISLFSGAMGLDLGLEQAGLD-IKIAQDIDQWCART---------MAANNRQFVHGDIRQ 53

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
               +  +C    + + L               G+   + GGPPCQ FS   +  +   + 
Sbjct: 54   LVANDPNCRFLLDPSGLKT-------------GEAFAVVGGPPCQPFSTAGK--RLGTND 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVS--FNK-----------------GQTFRLT 1283
             +  + + F+      +PR+F++ENV+  +S   N+                 G  F + 
Sbjct: 99   PRGSLFMEFIHVISVVRPRFFVMENVKGLLSAAINQRPLGERRDCPIEPDEIAGSVFEVI 158

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
                 ++GY++ +GIL+A  +GV Q R+R  I  +  ++ +   P P H           
Sbjct: 159  KQEFNKLGYKLVYGILDAAHYGVPQFRERLIILGSRDNENI-FLPIPTHF---------- 207

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM 1403
                       T   + +R  T+RD I DL A              DP         G  
Sbjct: 208  ----------QTHQNSSYRWRTLRDAIEDLEA--------------DP---------GLF 234

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
            A  +         L+ +R   IP   G +W +LP E V+ + G              K  
Sbjct: 235  ATFSPE------RLSYLR--DIPM--GGNWRNLPPEVVRTAMG-----------GAFKSG 273

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
                G + RLD++   PT +T P  + K  M  HP QDR L+V+E AR Q FPD+++  G
Sbjct: 274  GGNAGFYRRLDYDQPSPTLVTSP--VQKATMLCHPTQDRALSVKEYARIQQFPDNWRIEG 331

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             +   +RQIGNAVP  L  A+G+ L     +K
Sbjct: 332  RLTDCYRQIGNAVPTGLGIAIGQMLIAVANNK 363


>gi|448343455|ref|ZP_21532395.1| DNA-cytosine methyltransferase [Natrinema gari JCM 14663]
 gi|445623850|gb|ELY77250.1| DNA-cytosine methyltransferase [Natrinema gari JCM 14663]
          Length = 458

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 195/496 (39%), Gaps = 104/496 (20%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            + +D+F G GGLSEGL+++G    +WA++Y+E A E  + NH          +  ++A +
Sbjct: 6    SAIDLFCGAGGLSEGLRRAGYD-VRWAVDYDESAVETHRENH---------GDYAIQADI 55

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
             +   AED                        PG +D + GGPPC  FS + R    +  
Sbjct: 56   RETDPAEDGPDIE-------------------PGNLDLVAGGPPCPSFSTIGRSKLGSLE 96

Query: 1242 KVQCE------MILAFLSFADYFQPRYFLLENVRNFVSFN-------------------- 1275
                +      + L FL +  +FQPR F++ENV   ++                      
Sbjct: 97   DRSVDEDDRNVLYLDFLRYVKHFQPRAFVMENVPGMLTDTVTVESDTVQESLPIGEEQEV 156

Query: 1276 ----KGQTFRLTLASLLEM---GYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPE-- 1326
                 G+   +T   + EM   GY V   +++A  FGV Q R+R F         LPE  
Sbjct: 157  EQSPVGEEVPVTEVIIEEMEGLGYTVDKFLVDAADFGVPQHRERLFFIGRQIGKALPELT 216

Query: 1327 -W---PEPM------HVFAAPELKIMLSDNYQYSAVRSTANGAPFRA--------MTVRD 1368
             W    EP        +   PEL+     + +      ++   PF          +TV D
Sbjct: 217  RWYTHREPTDREKDQQMQIRPELRDSTDKSQETFKTGLSSVLPPFEPDREYRLPYLTVAD 276

Query: 1369 TIGDLPAV---GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKI 1425
             I DLP +   G        EY   PVS +Q+  R N+    D   + +   +       
Sbjct: 277  AIMDLPPISPDGEMPPNQATEYTLPPVSPYQEWAR-NVPDGEDWEDQPLRNHD------- 328

Query: 1426 PKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT--SI 1483
                 A WH+  D  +    G  V    W +   + R   ++       ++   P   + 
Sbjct: 329  -----ARWHNHLDLSIYKLLGHGVG---WNIGQVSTRLQPYRDDVFSDKYKKQNPAKPAS 380

Query: 1484 TDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            T    M K G  F HP + R L+ RE AR Q F D+Y    S    +R IGNAVPP L  
Sbjct: 381  TILAHMRKDGHMFIHPTEARSLSPREAARIQSFRDTYWVPESRTDAYRLIGNAVPPRLGE 440

Query: 1543 ALGRKLKEAVESKRST 1558
            A+G  +++ + +   T
Sbjct: 441  AVGVAVRQTILTDSHT 456


>gi|429860368|gb|ELA35108.1| DNA methyltransferase dim-2 [Colletotrichum gloeosporioides Nara gc5]
          Length = 1133

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 179/465 (38%), Gaps = 78/465 (16%)

Query: 1098 GKCIEGEDELEVEKQG--GASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPA 1155
            G+ +  +D     +QG   + Q   L  +D+F G G    GL++ G    +W        
Sbjct: 657  GQIVRMDDAPPTLRQGFDPSRQVPKLRGVDLFCGGGNFGRGLEEGGAIEMQW-------- 708

Query: 1156 GEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPG 1215
                                              C S   A E   S      + +P  G
Sbjct: 709  ------------------------------HQRTCYSHRLALEGKFS------DKVPKIG 732

Query: 1216 QVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFN 1275
             VDF++ G PC GFS +     +   +    ++ AF SF D ++PRY LLENV   V   
Sbjct: 733  TVDFVSAGSPCPGFSRLTVDKATPEQRKNQSLVAAFASFIDTYRPRYGLLENVLEIVQPR 792

Query: 1276 KGQ---TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMH 1332
            + +    F   + +L+ +GYQ  F +L+A ++G  QSR R F+  A+P   LPE P   H
Sbjct: 793  REKNEDVFCQLICALVGLGYQTHFFLLDAWSYGSPQSRSRVFLCFAAPGHKLPEPPLQSH 852

Query: 1333 VFAAPE--LKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390
                P+  LK +                 PFR +   +   DLP + +G     + + + 
Sbjct: 853  SHYKPDVRLKTLGKLPNDEPMGEHLVMPTPFRFIGSEEATADLPNIIDGKFDICIPFPDH 912

Query: 1391 PVSW-FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
             ++  + K +R  ++V+  H           +   I  +   D+      +V  ++ +  
Sbjct: 913  RLAHGYTKYLRNQLSVIPTHPYGMNFTTTWNKGHGIMTKAERDFFPAAGRRVTQASSRA- 971

Query: 1450 DLIPW--CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTV 1506
                W  C P    +                  T  T P P   ++G   H +Q R LTV
Sbjct: 972  ----WSRCFPQQVMQ------------------TVTTVPSPADARMGRILHWNQSRTLTV 1009

Query: 1507 RECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEA 1551
             E  R+QGF D     G  + + R + N+V   ++ ALG   +EA
Sbjct: 1010 MEARRAQGFLDHEVILGQPKDQWRVVVNSVAKEVSLALGLSFREA 1054


>gi|325270791|ref|ZP_08137382.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
 gi|324986907|gb|EGC18899.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
          Length = 437

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 174/435 (40%), Gaps = 115/435 (26%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
              ++++FAGCGGL+ G+ ++G        E E  A    + N P+        NV+    
Sbjct: 73   FTSVELFAGCGGLALGIHKAGFRHVLLN-EIEPVACRTLRRNRPD-------WNVL---- 120

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                                 + D + ++  PL G+VD + GG PCQ FS   +  +   
Sbjct: 121  ---------------------NEDIHRVDFSPLSGKVDLLTGGFPCQAFSYAGK--KGGM 157

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ-VRFGIL 1299
               +  +           QP+ FL ENV+  +S + G T R+   ++ E+GY  V   +L
Sbjct: 158  KDARGTLFFELARAVREIQPKVFLCENVKGLLSHDGGNTLRVIKGTIAELGYTLVEPRVL 217

Query: 1300 EAGAFGVSQSRKRAFIWAA----SPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            +A  + V Q R+R F+ A     S H T   WP P H                       
Sbjct: 218  KAVMYKVPQKRERLFLVALRNDLSGHVTF-RWPSPYH----------------------- 253

Query: 1356 ANGAPFRAMTVRDTI--GDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKE 1413
                  R MT+RD    GDL +    +S    E Q  P    ++R+              
Sbjct: 254  ------RIMTLRDAFFKGDLFSCDVPSS----EGQAYPER--KRRV-------------- 287

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
                     + +P+  G DW  LP+++ K   G    L                G+  RL
Sbjct: 288  --------LELVPE--GQDWRSLPEKEQKAYMGASYYL-----------GGGKTGMARRL 326

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
              +   P+      P  K     HP + R LTVRE AR Q FPD + F GS+  ++RQIG
Sbjct: 327  AMDD--PSLTLTCSPAQKQTERCHPTETRPLTVREYARIQTFPDDWSFCGSLSAQYRQIG 384

Query: 1534 NAVPPTLAFALGRKL 1548
            NAVP  LA+A+GR +
Sbjct: 385  NAVPVNLAYAMGRSI 399


>gi|335039076|ref|ZP_08532262.1| DNA-cytosine methyltransferase [Caldalkalibacillus thermarum TA2.A1]
 gi|334181044|gb|EGL83623.1| DNA-cytosine methyltransferase [Caldalkalibacillus thermarum TA2.A1]
          Length = 367

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 153/358 (42%), Gaps = 94/358 (26%)

Query: 1213 LPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFV 1272
            LP +   + GGPPCQ FS   +  +   +  +  + + F+      +PR+F++ENV+  +
Sbjct: 46   LPEEPFAVVGGPPCQPFSTAGK--RLGTNDPRGSLFMEFIHVIKMVRPRFFVMENVKGLL 103

Query: 1273 SF-------------------NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRA 1313
            S                      G  F +   +  E+GY++ +G+L+A  +GV Q R+R 
Sbjct: 104  SVAIKHRPLKERNEKPLKPEERPGSAFEIIKQTFAELGYKIIYGVLDAVHYGVPQFRERL 163

Query: 1314 FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDL 1373
             I  +  H+ +   P+P H       ++    +Y++               T+R+ I DL
Sbjct: 164  IIIGSRDHEDI-FLPKPTH------FQVHQDPSYRWR--------------TLREVIEDL 202

Query: 1374 PAVGNGASKTIMEYQNDP---VSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPG 1430
                          +N+P    S+  +RIR                   +R   +    G
Sbjct: 203  --------------ENNPGPCASFSPERIR------------------FLRMVPM----G 226

Query: 1431 ADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
             +W +LP E           +IP  +    K      G + RLD++   PT +T P  + 
Sbjct: 227  GNWRNLPPE-----------VIPEAMGGAYKSSGGKVGFYRRLDYDQPSPTLVTSP--IQ 273

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            K  M  HP QDR L+VRE AR Q FPD ++  G +   +RQIGNAVP  L  A+G+ L
Sbjct: 274  KATMLCHPTQDRPLSVREYARIQQFPDDWKIEGKLSDCYRQIGNAVPLGLGKAIGQML 331


>gi|123967970|ref|YP_001008828.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. AS9601]
 gi|123198080|gb|ABM69721.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. AS9601]
          Length = 698

 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 195/452 (43%), Gaps = 77/452 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS GL                         H  +  +I  C++   ++M 
Sbjct: 54   AVDLFSGAGGLSLGL-------------------------HRANFDVILACDIRNDSIMT 88

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVIN-NLPLPGQVDFINGGPPCQGFS---GMNRFNQS 1238
                   C   S   +L+     N I+  L   G++  I GGPPCQ FS      + N+ 
Sbjct: 89   HRHHFGGC---SYECDLSKRKVINEISEQLNKCGEISLIAGGPPCQPFSRNIKWRKHNEE 145

Query: 1239 TWSKVQ------CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
              ++ Q       E+  +F+S  +  +P+ FL+ENV +     + + +R  +    + GY
Sbjct: 146  VSAQHQELNEDRRELWESFISIVEQVKPKAFLMENVTDIAQTGEQEIYRSIINRAEKAGY 205

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSA 1351
            ++   ++ A  +GV Q R R FI     ++  P +WP+P                 +Y +
Sbjct: 206  RINPKLIYAWQYGVPQLRPRLFISGTKINECAPMKWPKP-----------------KYDS 248

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN--DPVSWFQKRIRGNMAV---- 1405
            +          A+T+ + I DLP +  G  +   E  +   P + +QK +R  + +    
Sbjct: 249  LEE--------AVTLDEAISDLPPLKGGWDEKWDEKYSYEGPKNDYQKLMRNWLDIDDEM 300

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            + DH+ +++ E +L    K+ +  G  +  L +E+ + S                 + NQ
Sbjct: 301  IHDHLIRKVREDDL-ETFKLMRSTGIKYSQLSEEQRRYSVTSKA-----FREGKQVKQNQ 354

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGS 1524
                  + +        +T    M K G  + HP Q+R L+VRE AR Q FPD + F+G 
Sbjct: 355  KMSFGDKYNILKPNEPCLTITAHMSKDGYWYIHPHQNRTLSVREAARVQSFPDGFNFYGG 414

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
              ++  QIG AV P +AF LG+   +++++++
Sbjct: 415  PSNRFHQIGEAVAPIVAFELGKSFMKSIKNEK 446


>gi|119493084|ref|ZP_01624009.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
 gi|119452829|gb|EAW34004.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
          Length = 441

 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 190/442 (42%), Gaps = 87/442 (19%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG++ G +Q+G      A+E +       + N P            L +V  
Sbjct: 16   AVDLFAGSGGMTLGFEQAGFDVLA-AVEIDPIHCAVHQYNFP------------LWSVF- 61

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C D      +S+   + +S+             +D + GGPPCQGFS M +        
Sbjct: 62   -CEDISKL--SSDKIRIYSSIKNQ---------DIDVVFGGPPCQGFSLMGK---RLLED 106

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM-GYQVR--FGIL 1299
             +  ++  F+      +P++F+ ENV+   S  K Q F   L +  E  GYQV+  + +L
Sbjct: 107  PRNLLVFHFVRIVAELKPKFFVFENVKGMAS-GKHQNFIQELINKFEYYGYQVQQPYQVL 165

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV Q R+R F+        LP +PEP   F  P           YS V    +  
Sbjct: 166  NAAYYGVPQKRERLFLLGCREDLALPNYPEP--TFQPP-----------YSQVAKRYSHL 212

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQN---DPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            P    TVR+ + DLP + N    T  ++ +   D  S++ K +RG        I+K +N+
Sbjct: 213  P-PTPTVREALQDLPKIENYPELTQQDWADVCFDKPSFYGKILRG--------IAKNVND 263

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
             +  R Q   +R  +           L T   ++ I      T     +    F +LD +
Sbjct: 264  YSYPR-QYNSRRLTSS----------LRTEHSIESIER-FAATPPGKTEPISRFHKLDPD 311

Query: 1477 G-------NFPTS---ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
            G         P+S    T P+P+       HP   R +TVRE AR   +PD ++FH +  
Sbjct: 312  GLCNTLRAGTPSSRGAYTSPRPI-------HPFIPRCITVREAARLHSYPDWFRFHVTKW 364

Query: 1527 HKHRQIGNAVPPTLAFALGRKL 1548
            H  RQIGN+VPP LA A+  ++
Sbjct: 365  HGCRQIGNSVPPLLAQAVAAEM 386


>gi|428203215|ref|YP_007081804.1| DNA-methyltransferase Dcm [Pleurocapsa sp. PCC 7327]
 gi|427980647|gb|AFY78247.1| DNA-methyltransferase Dcm [Pleurocapsa sp. PCC 7327]
          Length = 418

 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 195/436 (44%), Gaps = 75/436 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      A+E +       + N P   +L              
Sbjct: 13   VDLFAGAGGMTLGFEQAGFDVLA-AVEIDPIHCATHEYNFPFWTVL-------------- 57

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            C D    ++ +E    +A  D +          +D + GGPPCQGFS + +         
Sbjct: 58   CRDITK-ITGAEIRNQSAIGDRD----------IDVVFGGPPCQGFSLIGK---RVVDDP 103

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM-GYQVR--FGILE 1300
            +  ++  FL      +P++F++ENVR  ++  K Q    TL    ++ GYQV+  + +L 
Sbjct: 104  RNSLVFQFLRVVLELKPKFFVMENVRG-LAVGKQQKILETLIQEFQLQGYQVQKNYQVLN 162

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R+R F+  A     LP++P+P+        + +  +N++Y  + S    AP
Sbjct: 163  AACYGVPQARERLFLLGAREDFELPKYPQPI-------TQPVRLNNFKYKKL-SNLPTAP 214

Query: 1361 FRAMTVRDTIGDLPAVGNGAS---KTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                TV D IGDLP V +      K  +  +    S +   +RG +  L D  S +  E 
Sbjct: 215  ----TVWDAIGDLPEVEHYPELLRKDWVIAECKGSSHYALILRG-IKQLEDDYSYD-REY 268

Query: 1418 NL-IRCQKIPKRPGADWHDLPDEKVKLSTGQVV---DLIPWCLPNTAKR-HNQWKGLFGR 1472
            NL I    I  R  A+      E     T ++     L P  + NT +   N++ G F  
Sbjct: 269  NLQILSSSIRTRHTAETIKRFQETRHGETEKISRFHKLHPDGICNTLRAGTNKYNGAF-- 326

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
                       T  +P+       HP   R +TVRE AR   +PD ++FH +  H  RQ+
Sbjct: 327  -----------TSARPI-------HPFTPRCITVREAARLHSYPDWFRFHATKWHGFRQV 368

Query: 1533 GNAVPPTLAFALGRKL 1548
            GN+VPP LA A+  ++
Sbjct: 369  GNSVPPLLAKAVAAEI 384


>gi|159897057|ref|YP_001543304.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus DSM 785]
 gi|159890096|gb|ABX03176.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus DSM 785]
          Length = 354

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 178/437 (40%), Gaps = 101/437 (23%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            A +D+F G GGL+ GL   G       I+ +     A++ N        N    I +++ 
Sbjct: 4    AVIDLFCGVGGLTHGLILEGFGVLA-GIDNDPSCKYAYEQN--------NRTRFIEKSIT 54

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
            E                    +D   +N L    Q   + G  PCQ FS   ++ + + +
Sbjct: 55   E--------------------VDGRELNALYPNNQHKILVGCAPCQDFS---QYTKKSRT 91

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              + +++  F       +P    +ENV    +FN+G+ F   + +L ++GY V   ++  
Sbjct: 92   GTKWQLLTEFSRLIREIEPDIISMENVPEVRTFNRGEVFNNFIQALEQLGYHVSHSVVHC 151

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +G+ Q R R  ++AA     + +   P H    PE       NY+             
Sbjct: 152  PDYGIPQQRDRLVLFAAK--QGVIKIIPPTH---TPE-------NYR------------- 186

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
               TVR+ IG LP +  G       ++ D +                H +  + ++NL R
Sbjct: 187  ---TVREVIGSLPPITAGG-----HWEGDSM----------------HAASRLEDINLRR 222

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
             Q     PG  W D P+E           LI  C  +  +    +  ++GR++W+   PT
Sbjct: 223  IQH--SVPGGTWADWPEE-----------LIAEC--HKKESGESYGSVYGRMEWDKVAPT 267

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF--HGSIQHK--HRQIGNAVP 1537
              T     G  G   HP+QDR +++RE A  Q FP SYQF   G ++ K   RQIGNAVP
Sbjct: 268  ITTQCNGYGN-GRFGHPEQDRAISLREAALLQTFPRSYQFAPEGQLKFKTVSRQIGNAVP 326

Query: 1538 PTLAFALGRKLKEAVES 1554
              L   + + +K  +E 
Sbjct: 327  VALGRVIAKSIKRFLEG 343


>gi|256375192|ref|YP_003098852.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255919495|gb|ACU35006.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 361

 Score =  115 bits (288), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 175/446 (39%), Gaps = 117/446 (26%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAGCGG++ G   +G      A+E++  A   +  N                     
Sbjct: 2    IDLFAGCGGMTSGFTSAGFEPVM-AVEHDLHAASTYAANF-------------------- 40

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN-----QS 1238
                ED V     A++AA  D  V        +VD + GGPPCQGFS +   +      S
Sbjct: 41   ---GEDHV---RWADIAAVPDSAV-------PRVDVVVGGPPCQGFSTLGSRDVDDPRNS 87

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
             W +        +L      +P  F++ENV  F++     +    L      GY++  G+
Sbjct: 88   LWRE--------YLRVVRAARPSVFVIENVGRFLA-----STEFALLQAETEGYELSAGV 134

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  FGV Q R+RA +  +       E P P H   +            + AVR    G
Sbjct: 135  LLAADFGVPQRRRRAIVIGSRVGKV--ELPAPTHARES------------WHAVRDVLTG 180

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             P           ++PA      +   E+       F + + G       H+ +    L+
Sbjct: 181  LP-----------EVPA-STALPRASAEF-------FGRSVPGRFTSTDLHVGRNPTPLS 221

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG- 1477
            L+R + +P  PG    DLPDE           L+P C     ++      + GR+ W+  
Sbjct: 222  LLRYRHVP--PGGGRFDLPDE-----------LLPRCW---REKKTGTTDVMGRMRWDEP 265

Query: 1478 --NFPTSITDPQPMGKVGMCFHPDQ---------DRILTVRECARSQGFPDSYQFHGSIQ 1526
                 T    P+     G   HP           DR +T  E AR QGFPD +++ G+  
Sbjct: 266  SLTIRTEFYKPEK----GQYLHPQWEPGEDGHRVDRPITHLEAARLQGFPDGFRWCGTKG 321

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAV 1552
               RQIGNAVPP LA A+   ++ A+
Sbjct: 322  GVARQIGNAVPPPLARAVAEHVRGAL 347


>gi|409992167|ref|ZP_11275373.1| cytosine-specific methyltransferase [Arthrospira platensis str.
            Paraca]
 gi|79835461|gb|ABB52090.1| Mod [Arthrospira platensis]
 gi|291568828|dbj|BAI91100.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
 gi|409936970|gb|EKN78428.1| cytosine-specific methyltransferase [Arthrospira platensis str.
            Paraca]
          Length = 411

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 176/440 (40%), Gaps = 92/440 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAGCGG+S GL+ +G      A+E++         N P        C+ I       
Sbjct: 8    IDLFAGCGGMSLGLEAAGFD-VAVAVEFDAVHCLVHHFNFPY-------CHTI------- 52

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            CGD    +S  ++AE+   L     +      +VD I GGPPCQGFS + +         
Sbjct: 53   CGD----ISQVKSAEILDQLQLKYGHT-----EVDLIAGGPPCQGFSHIGK---RQLDDP 100

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILEA 1301
            +  ++  +L      QP+YF+ ENV    +    +     +     +GYQV+    IL+A
Sbjct: 101  RNSLVFEYLRMIAEIQPKYFIFENVPGIATGKHKRFLDEIITEFEGIGYQVKKPIKILDA 160

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +G  Q RKR  +  +     + E+P               ++N +   V        +
Sbjct: 161  SEYGAPQKRKRLILIGSRFDVKMAEYPA--------------TNNSEIVTV--------Y 198

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQND-------PVSWFQK-RIRGNMAVLTDHISKE 1413
            +A++  + I        G S   +EY+ D       P   F     R     +  H+   
Sbjct: 199  QAISDLEKIDHFTNYDPGISPAFLEYEGDRKKYSLVPSDSFSLCHKRSIEPTVYGHVGSV 258

Query: 1414 MNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR-HNQWKGLFGR 1472
               L++ R  K P  PG                +   L P  L NT +   N  KG +  
Sbjct: 259  HTPLSIARFAKTP--PGTIE----------PKSRFFKLSPTGLCNTLRAGTNSDKGAY-- 304

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
                       T P+P+       H    R +T+RE AR   FPD +QFH +I H  R+I
Sbjct: 305  -----------TAPRPI-------HYSIPRCITIREAARLHTFPDWFQFHRTIWHGFREI 346

Query: 1533 GNAVPPTLAFALGRKLKEAV 1552
            GNAV P LA  LG  + +A+
Sbjct: 347  GNAVIPILAKQLGGSVIDAL 366


>gi|428305832|ref|YP_007142657.1| DNA-cytosine methyltransferase [Crinalium epipsammum PCC 9333]
 gi|428247367|gb|AFZ13147.1| DNA-cytosine methyltransferase [Crinalium epipsammum PCC 9333]
          Length = 435

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 193/443 (43%), Gaps = 83/443 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      ++E +       K N P   +L              
Sbjct: 11   VDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHKFNFPFWSVL-------------- 55

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPG--QVDFINGGPPCQGFSGMNRFNQSTWS 1241
            C D              AS     I  +P  G  ++D + GGPPCQGFS M +       
Sbjct: 56   CQDI-------------ASTTGKDIRIIPAIGNKEIDIVFGGPPCQGFSLMGK---RMLD 99

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE----MGYQVR-- 1295
              +  +   F+      QP+YF+LENVR  ++  K + F   +A ++E    +GY  +  
Sbjct: 100  DPRNSLAFHFIRLIGELQPKYFVLENVRG-MAIGKHKKF---IAEIIEEFQKIGYLTKSD 155

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            + IL A  +GV Q+R+R F+        LP++P+             L+   +   + ST
Sbjct: 156  YQILNAAEYGVPQNRERLFLIGCRQDMQLPKYPD------------KLTRPAKQKKINST 203

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEY---QNDPVSWFQKRIRGNMAVLTDHISK 1412
            +N  P    TV D + DLP++ N       ++   +    S + +R+RG  A+  D+  +
Sbjct: 204  SN-LPLNP-TVWDALQDLPSIENYQELLTRDWVFAEFGKPSEYGRRLRGLCAIDNDYSYQ 261

Query: 1413 EMNELNLIRCQKIPKRPGAD---WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGL 1469
              ++L ++      +   A    +   P  K +    +   L P  + NT +        
Sbjct: 262  RQHDLRILTSSLRTEHTLASVTRFESTPHGKAE-PISRFHKLDPNGVCNTLRA------- 313

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
             G     G F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  
Sbjct: 314  -GTPSNRGAF----TSPRPI-------HPFIPRCITVREAARLHSYPDWFRFHVTKWHGF 361

Query: 1530 RQIGNAVPPTLAFALGRKLKEAV 1552
            RQIGN+VPP LA A+  ++ +A+
Sbjct: 362  RQIGNSVPPLLAKAVATEIIKAL 384


>gi|408826936|ref|ZP_11211826.1| site-specific DNA methylase [Streptomyces somaliensis DSM 40738]
          Length = 335

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 175/423 (41%), Gaps = 102/423 (24%)

Query: 1133 LSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVS 1192
            ++ GLQ++G++   +A++    A + ++LN P                  +CGD      
Sbjct: 1    MTLGLQRAGLTPI-YALDVWPDAIDTYRLNLP--------------GHKAECGDV----- 40

Query: 1193 TSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFL 1252
                A+L A   ++VI     P + ++I GGPPCQG+S + + N+         +   FL
Sbjct: 41   ----ADLTAEKLKSVI-----PQRPNWIVGGPPCQGYSTVGKRNRDDQRN---RLFEHFL 88

Query: 1253 SFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA-SLLEMGYQVRFGILEAGAFGVSQSRK 1311
                + +P  F++ENV       K  ++   +A +  ++GYQVRF +  A   GV Q R+
Sbjct: 89   RIVGHLKPDGFVIENVLGL----KDMSYEQEVADAFKQLGYQVRFQVASAADHGVPQLRR 144

Query: 1312 RAFIWAASPHDTLPEWPEPMHVFAAPELK----IMLSDNYQYSAVRSTANGAPFRAMTVR 1367
            R                   H  A  E K    ++ +D Y                ++V 
Sbjct: 145  RVLFVG--------------HREA--EFKGLDPLLQADQY----------------VSVE 172

Query: 1368 DTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPK 1427
              IGDLPA+  G + T   Y     S FQK +RG    L  H + +     +     IP 
Sbjct: 173  QAIGDLPALQPGQTATT--YDRKAESQFQKLMRGGSTTLQGHSASKHPPHLVEAISHIPD 230

Query: 1428 RPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ 1487
              G +   +PD                 L   +  HN +  L   L        ++   Q
Sbjct: 231  --GGNRTSIPDH----------------LQPKSGFHNSYSRLASWL-------PAVAITQ 265

Query: 1488 PMGKVG--MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
             MGK     C HP QDR LT RE AR Q FPDS+ F G    +  Q+ NAVPP LA +LG
Sbjct: 266  NMGKPSGTRCIHPKQDRGLTTREGARLQSFPDSFCFTGPSTSQRLQVANAVPPLLAESLG 325

Query: 1546 RKL 1548
            R L
Sbjct: 326  RSL 328


>gi|416402327|ref|ZP_11687359.1| DNA-cytosine methyltransferase [Crocosphaera watsonii WH 0003]
 gi|357261917|gb|EHJ11130.1| DNA-cytosine methyltransferase [Crocosphaera watsonii WH 0003]
          Length = 422

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 119/445 (26%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            ++++  + T+++FAGCGG++ GL+ +G+                      E L+ +    
Sbjct: 66   STEKTEIKTIELFAGCGGMALGLENAGVRH--------------------ELLVEV---- 101

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLP---GQVDFINGGPPCQGFSG 1231
                        ++DCV+T +      ++ +  ++N+      G++D ++GG PCQ FS 
Sbjct: 102  ------------SKDCVNTLQKNRQNWTIFQEDVSNIDFQQYYGKIDIVSGGFPCQAFSY 149

Query: 1232 MNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMG 1291
              +     +   +  +   F       +P+  + ENVR  +S  KGQT  + L +  E+G
Sbjct: 150  AGKC--KGFEDTRGTLFFEFARCLAEVKPKIAIAENVRGLLSHQKGQTLEIILNTFKELG 207

Query: 1292 YQVRFGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPELKIMLSDNYQYS 1350
            Y   + ++ A    V Q R R  I A     + +P +P              + +NY   
Sbjct: 208  YDPYYEVISAQFLDVPQKRDRLIIIACRQDLNIIPIFP--------------IKNNY--- 250

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
                         ++++D + + P                P   + +R +  M+++T   
Sbjct: 251  ------------TISLKDALKNCPT--------------SPGVEYNERKKAIMSLVT--- 281

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
                              PG +W +LP E  K             + N+  +     G  
Sbjct: 282  ------------------PGGNWRNLPLEVQKDY-----------MKNSFYKGGGRTGFA 312

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
             RL W+    T    P    +   C HP++ R L +RE AR Q FPD ++F GS+  ++R
Sbjct: 313  KRLSWDEPCLTITCSP-AQTQTERC-HPEELRPLNIREYARIQTFPDDWEFTGSLTSQYR 370

Query: 1531 QIGNAVPPTLAFALGRKLKEAVESK 1555
            QIGNAVP  +A+ LG+ L + +  K
Sbjct: 371  QIGNAVPVNMAYHLGKCLIKMLTKK 395


>gi|452854838|ref|YP_007496521.1| Modification methylase Sau96I / Site-specific DNA methylase [Bacillus
            amyloliquefaciens subsp. plantarum UCMB5036]
 gi|452079098|emb|CCP20851.1| Modification methylase Sau96I / Site-specific DNA methylase [Bacillus
            amyloliquefaciens subsp. plantarum UCMB5036]
          Length = 452

 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 167/423 (39%), Gaps = 106/423 (25%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             L++FAG GGL  GL+++G   T  A+E    A  + + N P       N NVI      
Sbjct: 98   VLEVFAGAGGLMLGLEKAGFD-TAAALELNRHACASLRTNRP-------NVNVI------ 143

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              GD  D V                I N     ++D ++GG PCQ FS   R  +     
Sbjct: 144  -EGDIADIVKEG-------------IRNYIGDEEIDVLSGGYPCQAFSFAGR--KLGLKD 187

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  M   +    +  +P+ FL ENVR  VS  KG+T +  +    E+GY V F +L+A 
Sbjct: 188  ARGTMFYWYAQLLNELRPKMFLAENVRGLVSHEKGKTLQGMMDVFDEIGYNVTFKVLKAT 247

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             + V+Q  KR  I+       L    E    F AP   I +                   
Sbjct: 248  NYNVAQ--KRERIFIIGVRKDL----EAEFRFPAPRDYIPV------------------- 282

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
               +RD + ++P                P   + +R R  M ++                
Sbjct: 283  ---LRDVLQNVP--------------ESPGRQYPQRKREIMEMVP--------------- 310

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                  PG  W DLP           V++    +  +        G+  R+ W+    T 
Sbjct: 311  ------PGGYWRDLP-----------VEVQKEYMKGSFYLGGGKTGIARRISWDEPCLTL 353

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
             T P  M +   C HP++ R  TVRE AR Q FPDS+ F GS+  +++QIGNAVP  LA 
Sbjct: 354  TTAPD-MKQTERC-HPEETRPFTVREYARIQSFPDSWAFEGSMGEQYKQIGNAVPVELAR 411

Query: 1543 ALG 1545
             +G
Sbjct: 412  HVG 414


>gi|257075428|ref|ZP_05569789.1| DNA-cytosine methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 386

 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 170/379 (44%), Gaps = 70/379 (18%)

Query: 1193 TSEAAELAASLDENVINNLPLPG--QVDFINGGPPCQGFSGMNRFNQSTWSKVQCE---- 1246
            T E  E+ A   + + + + L G  +VD + GGPPCQ +S + RF+    SK+Q      
Sbjct: 58   TEENQEIIA---DEITDKMKLKGIHKVDVMIGGPPCQTYSVIRRFD----SKMQGRNWKD 110

Query: 1247 -----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
                 +   ++ F   F P  F+ ENV    S N G+     +  + + GY +   IL A
Sbjct: 111  DPRNYLFKRYVYFLQKFSPDIFVFENVPGIKSANGGEFLHNFVTMVNKAGYNITEKILNA 170

Query: 1302 GAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
              F V Q RKR  I  W        PE+    H +   EL                    
Sbjct: 171  KDFMVLQQRKREIIIGWKKGYKLDYPEFETVEHNYNVGEL-------------------- 210

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR-IRGNMAVLTDHISKEMNELN 1418
                      + DLP +  G    + EY++    + +K  IR +  +L  H ++  NE  
Sbjct: 211  ----------LNDLPGLEPGQGDYLQEYKSGASDYLEKTGIRKHNDILIQHKARYHNE-- 258

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQV-VDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
              R ++I +    +W+        +  G++  +L P+   NT    +++K +   L    
Sbjct: 259  --RDRRIYRYVINEWNT---NHRHIKYGELPAELRPY--ENTGTFSDKFKVVASDL---- 307

Query: 1478 NFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            N+  +IT    + + G  + HPD  Q R +TVRE AR Q FPD+++F G +  ++RQIGN
Sbjct: 308  NYSQTIT--AHLSRDGHYYIHPDIEQARSITVREAARLQSFPDNFKFEGPVSAQYRQIGN 365

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            AVPP +A ++  K+K+ ++
Sbjct: 366  AVPPIMAKSIALKIKKMLD 384


>gi|293395454|ref|ZP_06639738.1| modification methylase HgiDII [Serratia odorifera DSM 4582]
 gi|291422138|gb|EFE95383.1| modification methylase HgiDII [Serratia odorifera DSM 4582]
          Length = 354

 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 183/445 (41%), Gaps = 107/445 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D F GCGG SEGL+Q+G       I+ ++ A E +K N P++  + ++   I    
Sbjct: 1    MIAIDFFCGCGGASEGLRQAGFDVV-LGIDVDQQASETYKANFPDADFIFDD---IRNVT 56

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            +E+       V+ S A + A  L                ++   PCQ FS  N++     
Sbjct: 57   VER-------VANSIAFKSADGL---------------LLSACAPCQPFSQQNKYKNKDD 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNF--VSFNKGQTFRLTLASLLEMGYQVRFGI 1298
             ++ C ++     F     P Y  LENV     +  +K   F   ++ L ++ Y   + +
Sbjct: 95   ERI-C-LLDETHRFVSRLLPEYIFLENVPGIQKIDGSKESPFTRFISLLDKLNYHYVYFV 152

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
              A  +GV Q RKR F+  AS    +   PEP H             + + S V+     
Sbjct: 153  ANAEKYGVPQRRKR-FVLLASLLGPI-SIPEPTH-------------DIENSPVK----- 192

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                  TVR+ IG+ P + +G        +ND +                H S  + ELN
Sbjct: 193  ------TVREFIGEYPKLASGEVD-----KNDEL----------------HRSAILTELN 225

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG---LFGRLDW 1475
            L R +  P+  G D  D P            +LI  C       H  + G    +GR+ W
Sbjct: 226  LERIKNTPE--GGDRRDWP-----------TNLINTC-------HKDYTGHTDTYGRMSW 265

Query: 1476 EGNFPTSIT--DPQPMGKVGMCFHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            +   PT  T  +    G+ G   HPD  Q+R +++RE +R Q FP  Y F GS     +Q
Sbjct: 266  DKPAPTLTTKCNSYSNGRFG---HPDITQNRAISIREASRLQTFPKKYIFKGSFNSMAKQ 322

Query: 1532 IGNAVPPTLAFALGRKLKEAVESKR 1556
            IGNAVP  LA   G    E  E+ +
Sbjct: 323  IGNAVPCELARQFGLHFIEHNEASK 347


>gi|228471277|ref|ZP_04056083.1| modification methylase HgiDII [Porphyromonas uenonis 60-3]
 gi|228306919|gb|EEK16017.1| modification methylase HgiDII [Porphyromonas uenonis 60-3]
          Length = 351

 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 173/446 (38%), Gaps = 105/446 (23%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F G GGLS GL+++G+       + ++    A++ N        NN   I + +
Sbjct: 3    IGVVDLFCGIGGLSYGLREAGLQILA-GYDLDQTCAFAYERN--------NNAQFIYKDI 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                      VS  E + L A  D            V  + G  PCQ FS    F     
Sbjct: 54   R--------LVSGKEVSTLLAETD------------VKVLAGCAPCQPFSSYA-FKSKKK 92

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               + +++  F       QP    +ENV   ++F +       ++ L + GY V    + 
Sbjct: 93   DPNKYDLLYEFGRLVKEVQPDLVTMENVSQILTFKEKPVLEDFVSLLKDEGYFVYMNKIF 152

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
               +G+ Q+RKR  +  AS    +   P P H                           P
Sbjct: 153  CPDYGIPQNRKR-LVLLASKFGEISLIP-PTH--------------------------KP 184

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
               +TV+D IGDLPA+  G        + DP+                H SK ++ LNL 
Sbjct: 185  SNYLTVKDAIGDLPALRAGEVD-----RYDPL----------------HRSKSLSPLNLK 223

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN--QWKGLFGRLDWEGN 1478
            R Q+ P   G  W D P+           DL   C     KR N   +  ++GR+ WE  
Sbjct: 224  RIQRTPY--GGGWQDWPE-----------DLRLEC----HKRENGKSFGSVYGRMVWEKP 266

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG-----SIQHKHRQIG 1533
             PT  T     G  G   HP QDR +++RE A  Q FP SYQF       SI    R IG
Sbjct: 267  APTMTTLCTGYGN-GRFGHPTQDRAISIREAALLQTFPKSYQFFSDEKDVSITKASRYIG 325

Query: 1534 NAVPPTLAFALGRK-LKEAVESKRST 1558
            NAVPP L   +G   +K    SK + 
Sbjct: 326  NAVPPKLGEVIGNSIIKHLFHSKNAV 351


>gi|91069833|gb|ABE10765.1| C-5 cytosine-specific DNA methylase [uncultured Prochlorococcus
            marinus clone ASNC1092]
          Length = 686

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 195/452 (43%), Gaps = 77/452 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F+G GGLS GL                         H  +  +I  C++   ++M 
Sbjct: 54   AVDLFSGAGGLSLGL-------------------------HRANFDVILACDIRNDSIMT 88

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVIN-NLPLPGQVDFINGGPPCQGFS---GMNRFNQS 1238
                   C   S   +L+     N I+  L   G++  I GGPPCQ FS      + N+ 
Sbjct: 89   HRHHFGGC---SYECDLSKRKVINEISEQLNKCGEISLIAGGPPCQPFSRNIKWRKHNEE 145

Query: 1239 TWSKVQ------CEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
              ++ Q       E+  +F+S  +  +P+ FL+ENV +     + + +R  +    + GY
Sbjct: 146  VSAQHQELNEDRRELWESFISIVEQVKPKAFLMENVTDIAQTGEQEIYRSIINRAEKAGY 205

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSA 1351
            ++   ++ A  +GV Q R R FI     ++  P +WP+P                 ++ +
Sbjct: 206  RINPKLIYAWQYGVPQLRPRLFISGTKINECAPMKWPKP-----------------KFDS 248

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQN--DPVSWFQKRIRGNMAV---- 1405
            V          A+T+ + I DLP +  G  +   E  +   P + +QK +R  + +    
Sbjct: 249  VEE--------AVTLDEAISDLPPLKGGWDEKWDEKYSYEGPKNDYQKLMRDWLDIDDEM 300

Query: 1406 LTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            + DH+ +++ E +L    K+ +  G  +  L +E+ + S                 + NQ
Sbjct: 301  IHDHLIRKVREDDL-ETFKLMRSTGIKYSQLSEEQRRYSVTSKA-----FREGKQVKQNQ 354

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGS 1524
                  + +        +T    M K G  + HP Q+R L+VRE AR Q FPD + F+G 
Sbjct: 355  KMSFGDKYNILKPNEPCLTITAHMSKDGYWYIHPHQNRTLSVREAARVQSFPDGFNFYGG 414

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
              ++  QIG AV P +AF LG+   +++++++
Sbjct: 415  PSNRFHQIGEAVAPIVAFELGKSFMKSIKNEK 446


>gi|282901524|ref|ZP_06309446.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis raciborskii
            CS-505]
 gi|281193567|gb|EFA68542.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis raciborskii
            CS-505]
          Length = 436

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 180/456 (39%), Gaps = 91/456 (19%)

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
             Q    Q+     +D+F+G GGLS G++ +G      +IE +         N P      
Sbjct: 2    NQNKERQKRRPIAIDLFSGAGGLSLGIESAGFEVV-ISIEIDPVHSAIHNYNFP------ 54

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
             NC  I R +           S   + EL   L++  IN      +VD + GGPPCQGFS
Sbjct: 55   -NCANICRDI-----------SNVSSEELWNILNDKDIN------EVDLLAGGPPCQGFS 96

Query: 1231 GMN-RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
             M  R  +   +K    ++  ++      +PRYF+ ENV   VS              ++
Sbjct: 97   QMGYRHIEDPRNK----LVFEYVRVVRDIKPRYFIFENVPGIVSGKHKGFIEDLCHEFIQ 152

Query: 1290 MGYQ--VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
            +GY   V   IL A  FGV+Q+R R  +         P +P            ++     
Sbjct: 153  IGYNTIVPVLILNAADFGVAQNRSRLILLGWRKDMPKPVYP-----------GVLFEKPT 201

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVG------NGASKTIMEY-------QNDPVSW 1394
              S  R  ++  P+  +   D + DL  V        G S   +EY         DP   
Sbjct: 202  ANSKSRELSSLPPW--LGASDVLSDLEGVSVFIGKDEGLSPDKLEYCGPRSNFSFDPNGV 259

Query: 1395 FQ--KRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLI 1452
            F    R      ++  H+S    E +++R + +P            + V   T ++  L 
Sbjct: 260  FDLCHRRTFTQKLIYGHLSSTHTEQSIVRFKNVP------------QGVVEPTTRLFKLH 307

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
            P+   NT +     K              + T P+P+       H    R +++RE AR 
Sbjct: 308  PYRPSNTLRAGTDSKR------------GAHTAPRPI-------HYSHPRCISIREAARL 348

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
              FPD +QFH +I H HRQIGN+VPP LA  + + L
Sbjct: 349  HSFPDWFQFHRTIWHGHRQIGNSVPPLLAKEIAQSL 384


>gi|443476547|ref|ZP_21066447.1| DNA-cytosine methyltransferase [Pseudanabaena biceps PCC 7429]
 gi|443018456|gb|ELS32699.1| DNA-cytosine methyltransferase [Pseudanabaena biceps PCC 7429]
          Length = 425

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 184/447 (41%), Gaps = 90/447 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      ++E +       + N P          VI   V + 
Sbjct: 9    VDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHEYNFPM-------WKVICANVTKI 60

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD        E  + +   D           +VD + GGPPCQGFS M +     +   
Sbjct: 61   SGD--------EIRQKSQIGDR----------EVDVVFGGPPCQGFSLMGK---RAFDDP 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            + E++  F+        +YF++ENV+     N  +     + S  + GY+V   + +L A
Sbjct: 100  RNELVSHFMRIVTELNAKYFVMENVKGLTVGNHRKFLDEVIDSFEQNGYKVLQNYKVLNA 159

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFA-----APELKIMLSDNYQYSAVRSTA 1356
              FGV Q R+R F+        LP +P P+   A     A EL  + +    Y A+    
Sbjct: 160  AHFGVPQHRERLFLIGCRQDVHLPNYPAPITKPAKAKRIAKELIDLPNSPTVYEAIADLQ 219

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            + A   A+  +D      A  +G+SK +    +   + F  + + N  +LT  +  +  E
Sbjct: 220  DIAQHPALLNQDFCT---ATISGSSKYVELINDFGKANFGYKRKHNANILTSSLMSKHGE 276

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
             +  R +                                  NTA+   +    F +LD  
Sbjct: 277  SSKYRFR----------------------------------NTAQGEVERISRFYKLDLN 302

Query: 1477 GNFPT----------SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
            G   T          + T P+P+       HP+  R +TVRE AR   +PD ++FH +I 
Sbjct: 303  GISNTLRAGTPSNRGAFTAPRPI-------HPNSPRCITVREAARLHSYPDWFRFHKTIW 355

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAVE 1553
            H  RQ+GN+VPP LA A+  ++ E ++
Sbjct: 356  HGFRQVGNSVPPLLAKAVASQIMEILQ 382


>gi|428314437|ref|YP_007125413.1| DNA-methyltransferase Dcm [Microcoleus sp. PCC 7113]
 gi|428256049|gb|AFZ22007.1| DNA-methyltransferase Dcm [Microcoleus sp. PCC 7113]
          Length = 399

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 175/442 (39%), Gaps = 56/442 (12%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  LD+F G GGLS GL+++G+    WAI+  EPA   ++ N P++ +L           
Sbjct: 3    LRALDLFCGMGGLSWGLKETGLIEPLWAIDNHEPALALYRRNLPDTYVL----------- 51

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                      +  S++A L      ++I  + L G VD + GG PC+GF+ + R  Q T 
Sbjct: 52   ---------NIDLSKSANL-----RDLIEKIRLNGGVDLVVGGSPCRGFTQI-RNGQDTH 96

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLL-EMGYQVRFGIL 1299
            S     + + F        P  F+ ENV       K + F+  +  L     Y+V   +L
Sbjct: 97   SDPNNRLAIKFAEIVRELSPLAFIYENV---PQLEKSRVFKRFIGRLKGRNNYRVAHAVL 153

Query: 1300 EAGAFGVSQSRKRAFI----WAASPHDTLPEWPE-PMHVFAAPEL----KIMLSDNYQYS 1350
            EA  FG    R R  +    W       +P+  + P   F    +    KI      Q  
Sbjct: 154  EAANFGNPSRRARLIVVGIRWDFGRLPIIPKGVDIPHQQFWLRRVEQDGKIGYCSKLQEP 213

Query: 1351 AVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHI 1410
                  +    R + V   I DLP +      +   Y   P S +Q+  R        H+
Sbjct: 214  WRSCLLDPDDCRLVNVEQAIADLPILEGKTKGSNRSYGVPPQSAYQRWARQYTQETDGHV 273

Query: 1411 SKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLF 1470
               +      R + I   PG +W DLP          +   IP+   +   R + +   +
Sbjct: 274  VPRVRPETRERLKAI--VPGGNWRDLPTP--------LTYRIPFEPASGQLRRSHYSA-Y 322

Query: 1471 GRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
             RL  E + PT        G     +H   +R LT RE AR  GF D++Q         +
Sbjct: 323  RRLLPESHSPTV------QGHSDFAYHYKYERALTPRELARLMGFTDNFQLGHEYDSVVQ 376

Query: 1531 QIGNAVPPTLAFALGRKLKEAV 1552
             IGNAVPP L+ A+   L E +
Sbjct: 377  AIGNAVPPPLSKAIAESLLEQL 398


>gi|257877766|ref|ZP_05657419.1| C-5 cytosine-specific DNA methylase [Enterococcus casseliflavus EC20]
 gi|257811932|gb|EEV40752.1| C-5 cytosine-specific DNA methylase [Enterococcus casseliflavus EC20]
          Length = 416

 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 185/458 (40%), Gaps = 95/458 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +++FAG GGL +G +Q+G      A+E+ +P                      +R +
Sbjct: 4    LTNIELFAGAGGLLDGFEQTGFYELLGAVEWMKPQ---------------------VRTL 42

Query: 1181 MEKCGDAEDCVSTSEAA---------ELAASLDENV------INNLPLPGQVDFINGGPP 1225
            + +  +  D    SE           EL    D++       +++L    +VD I+GGPP
Sbjct: 43   INRLENKYDDQYASEKVLNFDIQRTDELLHGWDDDEFGFNTGLDSLVGNRKVDVISGGPP 102

Query: 1226 CQGFSGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFVS-FNKGQTFR- 1281
            CQ +S   R       K      L  A+L   ++++PR F+ ENV   +S    G+    
Sbjct: 103  CQAYSLAGRIRDVNGMKEDYRNYLFEAYLRIVNHYRPRVFVFENVEGILSAIPSGELITD 162

Query: 1282 LTLASLLEMGYQV-----RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAA 1336
            L      ++GY++     ++ + +   FGV Q RKR  I      +    +   +H F  
Sbjct: 163  LVRKGFDKIGYEIVDDLRKYALQDMTEFGVPQKRKRVIIIGIRRDNDNLNYQNILHQF-- 220

Query: 1337 PELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPA---VGNGASKTIMEYQNDPVS 1393
                        Y+   ST      +  TVRD IGDLP    V N  +KT++   N  ++
Sbjct: 221  ------------YNETLSTVKVN--KVKTVRDAIGDLPGLYPVENPINKTLVYSNNTDIN 266

Query: 1394 WFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIP 1453
              + R                      R Q+I      D  +  ++    +T +++DL  
Sbjct: 267  GHKSRFHSQ------------------RDQEIFFELALDIQNGTNK--YRTTEKLIDL-- 304

Query: 1454 WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGM-CFHPD--QDRILTVRECA 1510
                 T KR N  K    R D   N     T P  + K G+   HPD  Q R +TVRE A
Sbjct: 305  -YFEKTGKRTNVHKYYVLRWDEPSN-----TIPAHLKKDGLRHIHPDPEQKRSITVREAA 358

Query: 1511 RSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            R Q F D ++F  S+   +  IGNAVPP  A  LG  L
Sbjct: 359  RLQTFSDDFEFIESMVANYEMIGNAVPPLFAKKLGMLL 396


>gi|427727460|ref|YP_007073697.1| DNA-methyltransferase Dcm [Nostoc sp. PCC 7524]
 gi|427363379|gb|AFY46100.1| DNA-methyltransferase Dcm [Nostoc sp. PCC 7524]
          Length = 428

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 186/450 (41%), Gaps = 84/450 (18%)

Query: 1107 LEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166
            L  E    ++       +D+FAG GG++ G +Q+G      A+E +       + N P  
Sbjct: 3    LSTENSASSTLRQRPIAVDLFAGAGGMTLGFEQAGFDVLA-AVEIDPIHCATHEFNFP-- 59

Query: 1167 LMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPC 1226
                  C V+ ++V           +T     L + + +          ++D +  G PC
Sbjct: 60   -----FCTVLCQSVEH---------TTGTEIRLRSKIGDR---------EIDAVICGSPC 96

Query: 1227 QGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
            QGFS M +     +   +  ++  F       QP++F++ENVR        Q  +  +A 
Sbjct: 97   QGFSLMGK---RVFDDPRNSLVFHFHRLVLELQPKFFVMENVRGITVGEHKQILQTLIAE 153

Query: 1287 LLEMGYQV--RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS 1344
               +GYQV   + IL A  +GV Q+R+R F+  A     LP++P+P+   A P       
Sbjct: 154  FKAIGYQVEENYKILNAAKYGVPQARERLFLLGARQDVKLPKYPQPITQPAQP------- 206

Query: 1345 DNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGN-----GASKTIMEYQNDPVSWFQKRI 1399
              ++     S     P    TV   IGDLP   +          I EY     S +   +
Sbjct: 207  --HKSGCQNSDLPVCP----TVWQAIGDLPEAEHYLELLNRDWVIGEYAKP--SDYAAIL 258

Query: 1400 RGNMAVLTDHISKEM--------NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDL 1451
            RG ++ L D  S           + L     Q   +R  A    +P E+  +S  +   L
Sbjct: 259  RG-ISTLADDYSYPRQFDARILSSSLRTKHSQPTIERFAA---TIPGEREPIS--RFHKL 312

Query: 1452 IPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECAR 1511
             P  + NT +         G   ++G+F    T P+P+       HP   R +TVRE AR
Sbjct: 313  HPAGVCNTLRA--------GTDKYKGSF----TSPRPI-------HPFTPRCITVREAAR 353

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLA 1541
               +PD ++FH +  H  RQ+GN+VPP LA
Sbjct: 354  LHSYPDWFRFHVTKWHGFRQVGNSVPPLLA 383


>gi|336243018|ref|XP_003343078.1| hypothetical protein SMAC_10456 [Sordaria macrospora k-hell]
          Length = 249

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 132/293 (45%), Gaps = 46/293 (15%)

Query: 1260 PRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS 1319
            PR+ ++ENV    S   G   R     +  +GYQV   +L A  +GV Q R+R  ++ A+
Sbjct: 2    PRWLVMENVTGITSIAGGAIVRQIYEEMNRLGYQVEMRVLRAEDYGVPQERRRV-VFIAN 60

Query: 1320 PHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG 1379
                   +PEP H               Q           PF  +TV D I DLP + NG
Sbjct: 61   RVGAPILFPEPTH-----------GKGLQ-----------PF--VTVWDAISDLPKLENG 96

Query: 1380 ASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE 1439
              + +  +   P + +Q  +RG+  +  +H +  +  +NL R + IP  PG  W D+P  
Sbjct: 97   EDRGLPSFGGRPKTAYQAMLRGDCRLAYNHSATRLASINLERMRHIP--PGGSWRDIPH- 153

Query: 1440 KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPD 1499
                      DL+P  +   AKR +  K  +GR        T +T        G   HP 
Sbjct: 154  ----------DLLPAGM-KLAKRSDHTK-RYGRPRKTDLACTILTKCD--VHWGAYIHPV 199

Query: 1500 QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            Q+R  TVRE AR Q FPD + F GS   +  Q+GNAVPP     LG+++ EA+
Sbjct: 200  QNRSFTVREAARLQSFPDFFDFKGSRTEQFVQVGNAVPPL----LGKRIAEAL 248


>gi|320588321|gb|EFX00790.1| DNA methyltransferase dim-2 [Grosmannia clavigera kw1407]
          Length = 1168

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 115/249 (46%), Gaps = 35/249 (14%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            +  L  LD+F GCG L  GL+ +G+  T+WA +  + A      N   +           
Sbjct: 650  QRKLRALDLFCGCGSLGRGLEDAGVVETRWANDIWDRAIHTLMANRATA----------- 698

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
             AV    G A++         LA +L       +P PG+VD I+GG PCQGFS +     
Sbjct: 699  DAVEPFLGSADEL--------LARALQGRYSRAVPAPGEVDLISGGSPCQGFSVLTSDKA 750

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ--------TFRLTLASLLE 1289
            +        M+ +F S  D ++P Y +LENV  FV+    Q         F   L +L+ 
Sbjct: 751  APKQYKNRSMVASFASMVDLYRPLYGVLENVPAFVARQPRQQDKNHREDIFGQLLCALVG 810

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
            +GYQV   +  A A+G  QSR+R F+  A+P   LP +P P H   +P      SD +  
Sbjct: 811  LGYQVAVHLGNAWAYGAPQSRQRVFLLFAAPAVRLPVFPLPSH--GSP------SDFHAT 862

Query: 1350 SAVRSTANG 1358
            +AV   ANG
Sbjct: 863  TAVGGLANG 871



 Score = 45.1 bits (105), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 1490 GKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLK 1549
            G  G   H    R LTV E  R+QG PD     GS + + + +GNAV   LA A+G  ++
Sbjct: 1000 GWTGAVLHWRHRRPLTVLEVRRAQGMPDDDVLVGSPKDQWKMVGNAVARPLAMAIGLAVR 1059

Query: 1550 EA 1551
            EA
Sbjct: 1060 EA 1061


>gi|378715722|ref|YP_005280611.1| DNA (cytosine-5-)-methyltransferase [Gordonia polyisoprenivorans VH2]
 gi|375750425|gb|AFA71245.1| DNA (cytosine-5-)-methyltransferase [Gordonia polyisoprenivorans VH2]
          Length = 375

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 178/447 (39%), Gaps = 86/447 (19%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            +S+   + TLD+FAG GGLSEGL                 +G  FK      L L     
Sbjct: 6    SSRGAKITTLDLFAGAGGLSEGLNSG--------------SGNRFKARCAVELELAAAAT 51

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
              L       GD  +C     A  +   L E+ +       QVD + GGPPCQGFS +NR
Sbjct: 52   YTLNHGGRLRGDRIEC-GPVYAGPIEDWLAEDDVP------QVDVVVGGPPCQGFSTLNR 104

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
               +     + E+   +        PRYF+LENV  F+  ++ + F+  L   +   Y +
Sbjct: 105  ---AGVGAHRNELWRLYAQTVQKATPRYFVLENVPAFLKSDQWRVFQDELEYGILKDYAI 161

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             F +L A  +G  Q+R+R  +         P  PEP H      L   L+          
Sbjct: 162  EFDVLNAADYGAVQARRRVIVIGHHKDLPAPGLPEPTHANEHRHLSEALA---------- 211

Query: 1355 TANGAPFRAMTVRDTIGDLPA---VGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                   R     D +G +P    +  GA+K                  G  +    H  
Sbjct: 212  -------RVPRAVDRVG-IPGGEILFRGAAKP-----------------GVFSTRDLHFG 246

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-LF 1470
            +   +L+L R + I    G    +LPD            L   C  N    HN+  G + 
Sbjct: 247  RNYTQLSLDRFKAISLN-GGSRSELPDH-----------LKAQCWRN----HNKGTGDVM 290

Query: 1471 GRLDWEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            GRL WE       T    P+     G   HPDQDR++T  E A  QGFPD Y++ G+ + 
Sbjct: 291  GRLTWEKPSVTIRTEFFKPEK----GRYIHPDQDRVITHYEAALIQGFPDDYRWVGTREE 346

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAVES 1554
              RQIGNAVP  L  A+G+ L    ES
Sbjct: 347  IARQIGNAVPIPLGSAIGKLLVARFES 373


>gi|396466512|ref|XP_003837707.1| hypothetical protein LEMA_P122420.1 [Leptosphaeria maculans JN3]
 gi|312214270|emb|CBX94263.1| hypothetical protein LEMA_P122420.1 [Leptosphaeria maculans JN3]
          Length = 1340

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 182/455 (40%), Gaps = 87/455 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  L IF+G G L  G+++ G      A+++   A    + N         N  + L   
Sbjct: 643  LKGLSIFSGGGSLDRGIEEGGGVEFHTAVDFSPHAIHTQRAN-------ARNPKICL--- 692

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
               CG  +D         L A+L     + +   G+V+F+  G PC GFS + +  +S  
Sbjct: 693  --YCGSVDDY--------LKAALKGTNRDLIAGIGKVEFLCAGSPCPGFSTLQQNFRSKA 742

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG----QTFRLTLASLLEMGYQVRF 1296
            S      I  FLSF D F+P Y +LENV +  S   G          +A L+ MGYQV  
Sbjct: 743  SLRNASHISTFLSFVDLFRPLYGVLENVVSMASTRTGFEDENVLSSVIACLVSMGYQVNQ 802

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             I++   +G +Q R R  I  A+P   L    +P H  +A         +Y+ +  +S  
Sbjct: 803  YIMDGWNYGSAQRRSRILITIAAP--GLTPVDQPWHTHSA---------SYEVTKSKSLG 851

Query: 1357 N-------------GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND---PVSWFQKRIR 1400
            N               PF   +      DLP +GNG ++T + + +    P+    +R  
Sbjct: 852  NLPNGQRLGERESYPTPFPVPSAGQVAADLPDIGNGNAQTCVSFPDHRVFPLPTIMER-- 909

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                 L  HI K                PG  +     E +KL            +P   
Sbjct: 910  ----SLLKHIPKSP--------------PGCGY----AEAMKLG----------LIPKML 937

Query: 1461 KRHNQWKGL-FGRLDWEGNFPTSITDPQPM-GKVGMCFHPDQDRILTVRECARSQGFPDS 1518
            +R+    G  + R+  +G  P   T  +    + G   H  QDR +T+ E  R+Q +PD 
Sbjct: 938  QRNKTETGRSYTRIKQDGLIPCITTRLRIADSRNGATIHWAQDRPITILEARRAQNYPDD 997

Query: 1519 YQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                G++  +   +GN V   ++ A G  L++A+E
Sbjct: 998  EPIIGTLAQQFEIVGNGVDRMVSLAFGLSLRQALE 1032


>gi|127441|sp|P25265.1|MTD2_HERAU RecName: Full=Modification methylase HgiDII; Short=M.HgiDII; AltName:
            Full=Cytosine-specific methyltransferase HgiDII
 gi|48773|emb|CAA38941.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 354

 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 176/436 (40%), Gaps = 101/436 (23%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            A +D+F G GGL+ GL   G       I+ +     A++ N+    +             
Sbjct: 4    AVIDLFCGVGGLTHGLILEGFGVLA-GIDNDPSCKYAYEQNNRTRFI------------- 49

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                  E  +S  +  EL A    N         Q   + G  PCQ FS   ++ + + +
Sbjct: 50   ------EKSISEVDGRELNALYPNN---------QHKILVGCAPCQDFS---QYTKKSRT 91

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEA 1301
              + +++  F       +P    +ENV    +FN+G+ F   + SL ++GY V   ++  
Sbjct: 92   GTKWQLLTEFSRLIREIEPDIISMENVPEVRTFNRGEVFNNFIQSLEQLGYHVSHSVVHC 151

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +G+ Q R R  ++AA     + +   P H    PE       NY+             
Sbjct: 152  PDYGIPQQRDRLVLFAAK--QGVIKIIPPTH---TPE-------NYR------------- 186

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIR 1421
               TVRD IG L    +G       ++ D +                H +  + ++NL R
Sbjct: 187  ---TVRDVIGSLATNYSGG-----HWEGDSM----------------HAASRLEDINLRR 222

Query: 1422 CQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPT 1481
             Q     PG  W D P+E           LI  C  +  +    +  ++GR++W+   PT
Sbjct: 223  IQH--SVPGGTWADWPEE-----------LIAEC--HKKESGESYGSVYGRMEWDKVAPT 267

Query: 1482 SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF--HGSIQHK--HRQIGNAVP 1537
              T     G  G   HP+QDR +++RE A  Q FP SYQF   G ++ K   RQIGNAVP
Sbjct: 268  ITTQCNGYGN-GRFGHPEQDRAISLREAALLQTFPRSYQFAPEGQLKFKTVSRQIGNAVP 326

Query: 1538 PTLAFALGRKLKEAVE 1553
              L   + + +K  +E
Sbjct: 327  VALGRVIAKSIKRFLE 342


>gi|297739604|emb|CBI29786.3| unnamed protein product [Vitis vinifera]
          Length = 60

 Score =  114 bits (285), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/59 (83%), Positives = 53/59 (89%)

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280
            GGPPCQ FS MN FNQS+WSKVQCEMI AFLSFADYF+PR+FLLENVR F+SFNKGQ F
Sbjct: 2    GGPPCQVFSRMNTFNQSSWSKVQCEMIPAFLSFADYFRPRFFLLENVRIFMSFNKGQAF 60


>gi|421886425|ref|ZP_16317599.1| LcmA protein [Salmonella enterica subsp. enterica serovar Senftenberg
            str. SS209]
 gi|379983821|emb|CCF89872.1| LcmA protein [Salmonella enterica subsp. enterica serovar Senftenberg
            str. SS209]
          Length = 355

 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 176/434 (40%), Gaps = 107/434 (24%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D F GCGG SEGL+Q+G       I+ +  A E ++ N P++  + ++   I    
Sbjct: 1    MIVIDFFCGCGGASEGLRQAGF-DVALGIDIDPQASETYRANFPDAAFISDD---IRNVT 56

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            +EK       V+ S A + A  L                ++   PCQ FS  N+F   T 
Sbjct: 57   VEK-------VANSIAFKSADGL---------------LLSACAPCQPFSQQNKF--KTE 92

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNF--VSFNKGQTFRLTLASLLEMGYQVRFGI 1298
               +  ++     F     P Y +LENV     +  +K   F   +A L ++GY+  + +
Sbjct: 93   DDERISLLDETHRFVSTLLPEYIMLENVPGIQKIDGSKESPFTRFIALLDKLGYEYVYFV 152

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
              A  +GV Q RKR F+  AS    +   PEP H             + + S V+     
Sbjct: 153  ANAEKYGVPQRRKR-FVLLASILGPI-SIPEPTH-------------DIENSPVK----- 192

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                  TVRD I + P + +G      E                      H +  +NELN
Sbjct: 193  ------TVRDFIKNYPRLESGEVDKYDEL---------------------HRAAMLNELN 225

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG---LFGRLDW 1475
            L R +  P+  G D  + P E           LI  C       H  + G    +GR+ W
Sbjct: 226  LKRIKNTPE--GGDRRNWPKE-----------LINEC-------HKDYSGHTDTYGRMSW 265

Query: 1476 EGNFPTSIT--DPQPMGKVGMCFHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
            +   PT  T  +    G+ G   HPD  Q R +++RE +R Q FP  Y F G+     +Q
Sbjct: 266  DKPAPTLTTKCNSYSNGRFG---HPDITQHRAISIREASRLQTFPADYIFKGAFNSMAKQ 322

Query: 1532 IGNAVPPTLAFALG 1545
            IGNAVP  LA   G
Sbjct: 323  IGNAVPCELARQFG 336


>gi|189423373|ref|YP_001950550.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
 gi|189419632|gb|ACD94030.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
          Length = 375

 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 183/440 (41%), Gaps = 90/440 (20%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            +++  D F GCGG S G Q++G+    +A++ ++ A   F  N P +    + C+  ++ 
Sbjct: 18   NISVFDFFCGCGGTSRGFQKAGMD-IAFALDVDKDAKNTFTKNFPST----DFCDKSIKK 72

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            +                 +   +LD+                G  PCQ F+  N   +S 
Sbjct: 73   LT--------------VLDFQHTLDK-------YKDSYKLFCGCAPCQPFTKQN--TESP 109

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNF--VSFNKGQTFRLTLASLLEMGYQVRFG 1297
                + +++  F +     +P +  +ENV     V  +K   F      L ++ YQ+ +G
Sbjct: 110  KQDERKDLLTYFGTIVKECEPDFVFVENVPGLQKVPNHKHGPFPAFEELLHKLNYQIAYG 169

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            ++ A  +G  Q R+R F+  AS H  +   PEP H                        +
Sbjct: 170  VVAAQDYGAPQLRRR-FVLLASRHGEI-SIPEPTH---------------------GKDS 206

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
              P++  TV D I DLPA+  G S                   GN  +  +H +  ++E+
Sbjct: 207  DTPYK--TVYDAIADLPAITAGESYA-----------------GNNVL--NHRAAMLSEI 245

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT---AKRHNQWKGLFGRLD 1474
            NL R  K     G   ++ P             L P C   T      H+     +GRL 
Sbjct: 246  NLERI-KASTHDGGGRNNWPRA-----------LWPECYTRTNEDGTTHSGHTDCYGRLW 293

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W+    T +T        G   HP QDR ++VRE AR QGF D+++F G++    RQIGN
Sbjct: 294  WKKP-ATGLTTRCISYSNGRFGHPVQDRAISVREAARLQGFDDTFEFTGNLNSMARQIGN 352

Query: 1535 AVPPTLAFALGRKLKEAVES 1554
            AVP  LAFA+G++  + +E+
Sbjct: 353  AVPVDLAFAMGKQFIKHIEA 372


>gi|385339121|ref|YP_005892993.1| modification methylase HphIA [Neisseria meningitidis G2136]
 gi|385854261|ref|YP_005900774.1| modification methylase HphIA [Neisseria meningitidis M01-240355]
 gi|416176215|ref|ZP_11609516.1| modification methylase HphIA [Neisseria meningitidis M6190]
 gi|416190835|ref|ZP_11615946.1| modification methylase HphIA [Neisseria meningitidis ES14902]
 gi|433466202|ref|ZP_20423666.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis 87255]
 gi|433468283|ref|ZP_20425722.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis 98080]
 gi|433491538|ref|ZP_20448641.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis NM586]
 gi|433495787|ref|ZP_20452837.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis M7089]
 gi|433497778|ref|ZP_20454798.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis M7124]
 gi|433499860|ref|ZP_20456854.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis NM174]
 gi|433502032|ref|ZP_20459005.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis NM126]
 gi|433508261|ref|ZP_20465147.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis 12888]
 gi|325133150|gb|EGC55821.1| modification methylase HphIA [Neisseria meningitidis M6190]
 gi|325138766|gb|EGC61318.1| modification methylase HphIA [Neisseria meningitidis ES14902]
 gi|325197365|gb|ADY92821.1| modification methylase HphIA [Neisseria meningitidis G2136]
 gi|325203202|gb|ADY98655.1| modification methylase HphIA [Neisseria meningitidis M01-240355]
 gi|432205525|gb|ELK61553.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis 87255]
 gi|432206688|gb|ELK62691.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis 98080]
 gi|432231223|gb|ELK86890.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis NM586]
 gi|432237429|gb|ELK93023.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis M7124]
 gi|432237813|gb|ELK93403.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis M7089]
 gi|432237998|gb|ELK93582.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis NM174]
 gi|432243787|gb|ELK99293.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis NM126]
 gi|432249912|gb|ELL05310.1| DNA (cytosine-5-)-methyltransferase family protein [Neisseria
            meningitidis 12888]
          Length = 332

 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 175/436 (40%), Gaps = 109/436 (25%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GGLS G +Q+G      ++E E    + ++ N P   +L           
Sbjct: 5    LTYIDLFSGAGGLSLGFEQAGFQQL-LSVEMESDYCQTYRTNFPHHQLL----------- 52

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFSGMNRFNQST 1239
                             +L    ++++IN L   GQ VD I GGPPCQGFS   +  ++ 
Sbjct: 53   ---------------QKDLTTLTEQDLINCLN--GQAVDLIIGGPPCQGFSMAGKIGRTF 95

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                +  +   F+      QP +F++ENV    + N G+T    + +   +GY V   IL
Sbjct: 96   TDDPRNHLFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKIL 155

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FGV Q R R           +  +PEP+ +                          
Sbjct: 156  SAADFGVPQIRSRVIFIGRRDKGKI-SFPEPLQI-------------------------- 188

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                 TV   IG  P +  G S       N  V+  +           +H ++ + ++  
Sbjct: 189  --SHQTVGSAIGHFPKLAAGES-------NPHVANHEA---------MNHSAQMLEKMAF 230

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            ++        G + +D+P E ++  TG +   I         R+N  K            
Sbjct: 231  VKN-------GGNRNDIP-EPLRPKTGDIRKYI---------RYNSNKP----------- 262

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
               IT     G +   FH +Q+R LTVRE A  Q FPD++ F GS +   +Q+GNAVPP 
Sbjct: 263  AVCIT-----GDMRKVFHYEQNRALTVRELAALQSFPDNFIFCGS-KIAQQQVGNAVPPL 316

Query: 1540 LAFALGRKLKEAVESK 1555
            LA A+   + +  E++
Sbjct: 317  LAKAIAESILKMSENE 332


>gi|400292323|ref|ZP_10794277.1| DNA (cytosine-5-)-methyltransferase [Actinomyces naeslundii str.
            Howell 279]
 gi|399902570|gb|EJN85371.1| DNA (cytosine-5-)-methyltransferase [Actinomyces naeslundii str.
            Howell 279]
          Length = 364

 Score =  114 bits (284), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 188/439 (42%), Gaps = 95/439 (21%)

Query: 1121 LATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            +  LD+FAG GGL+ G    S    +  A+E +  A  +++   P++             
Sbjct: 6    IRVLDLFAGAGGLTAGFHTASSRFRSIAAVEMDPEAAASYRATFPKT------------- 52

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                              ++ A   ++ +    +P  VD + GGPPCQGFS + + +   
Sbjct: 53   ------------------DVYAGAIQDWLAEGTIPAGVDVVVGGPPCQGFSTLGKRDAED 94

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS-----LLEMGYQV 1294
                  E     +  A   +P+YF++ENV    +F K   +R  LA+      LE  Y  
Sbjct: 95   ARNRLWEQYAQVIQRA---RPKYFVVENVP---AFGKSPQYRDFLAATRPGEFLE-DYSF 147

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             F +L A  +G  Q+R+RA +        +P +PEP H   +P+                
Sbjct: 148  DFRVLNAADYGAPQARRRAVLIGHRYDMAVPGFPEPTH---SPD---------------G 189

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF--QKRIRGNMAVLTDHISK 1412
              +  P+R  TVR T+  +PA      +  M+ + D +      +R+ G  +    H+S+
Sbjct: 190  GGDLPPYR--TVRQTLLGVPA------QPDMDERFDQLRTRVGSRRVPGAFSPRELHVSR 241

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
              ++++L R  KIP+  G +  +LPD              P  L +T+   +    + GR
Sbjct: 242  GYSDISLERFAKIPE--GGNRANLPDNLKA----------PCWLRHTSGSMD----VMGR 285

Query: 1473 LDWEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            L W+       T    P+     G   HP ++R +T  E A  QGFPD+++F GS     
Sbjct: 286  LHWDRPSVTIRTEFFKPEK----GRYLHPVENRAITHYEAALLQGFPDTHRFIGSRTSIA 341

Query: 1530 RQIGNAVPPTLAFALGRKL 1548
            RQIGNAVP  L  A+ R++
Sbjct: 342  RQIGNAVPIPLGAAIARQV 360


>gi|110799020|ref|YP_694603.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110673667|gb|ABG82654.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
          Length = 361

 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 178/449 (39%), Gaps = 121/449 (26%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +  FAG GGL  G+ ++G    K ++E EE      K N+P         NV+      
Sbjct: 5    AISFFAGAGGLDIGIHEAGFD-VKLSVELEEKYCVTLKQNNP-------TFNVV------ 50

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              GD  D   + E     A L+ N         ++D I GG PCQ FS   +  +  +S 
Sbjct: 51   -NGDIMDY--SKEKIYSDAGLNYN--------DEIDLIFGGSPCQSFSTAGK--RQAFSD 97

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFN---------------------KGQTFR 1281
             + + +L F+   +  +P+ FLLENV+  +S                        G   R
Sbjct: 98   ERGKAMLKFIELIEEVKPKAFLLENVKGLLSATLKHRPLNQRGKDFPPLDEDEENGSALR 157

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELK 1340
              L  + +  Y V + +L +  +GV+Q R+R  F+      + + E+P P H        
Sbjct: 158  YLLNQVKD--YNVVYKVLNSAEYGVAQKRERVIFVGIRKDLNKVYEFPNPTH-------- 207

Query: 1341 IMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
                               PF  +TV D I +L  +           +++ V + ++R++
Sbjct: 208  -------------GVGRKYPF--VTVNDVIQELGDI-----------KHNYVKYSEERLK 241

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
                                  + IPK  G +W DL +           D++   +    
Sbjct: 242  --------------------YMKLIPKG-GGNWRDLNE-----------DIVEKAMGGAY 269

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDP-QPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519
            K      G F R+      PT +T P Q    +G   HP +DR L++ E    QGFP  Y
Sbjct: 270  KSGGGKTGYFRRIKANEPSPTLLTSPIQKSTNIG---HPYEDRPLSIEEYIAIQGFPKGY 326

Query: 1520 QFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
            + +G+I +K+ QIGNAVP  LA  LG KL
Sbjct: 327  KINGTINNKYTQIGNAVPVKLAKVLGEKL 355


>gi|451853048|gb|EMD66342.1| hypothetical protein COCSADRAFT_179654 [Cochliobolus sativus ND90Pr]
          Length = 1157

 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 180/444 (40%), Gaps = 62/444 (13%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNC---N 1174
            +N L  L IF+G G L  GL++ G    +  +++ + A    + N   S  +   C   N
Sbjct: 613  DNKLRGLSIFSGGGLLDRGLEEGGAVDFRTIVDFSQHAIRTQQANIKNSTTVCLYCGSVN 672

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
              L + ++  GD      TS  A +               G VDFI  G PC  FSG+ +
Sbjct: 673  TFLNSALK--GD------TSFFARV---------------GAVDFIAAGCPCVAFSGLQQ 709

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
             + S  S +   +I  F SF D ++P Y +LENV N  S   G      +A L+  GYQV
Sbjct: 710  NHLSPSSLLNASLISTFCSFVDLYRPLYGVLENVLNISSERAGSALSQMVACLVSFGYQV 769

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELK---IMLSDNYQYSA 1351
               I+++  +G  Q R RA +  A+P       P   H  +  E++   +    N ++ A
Sbjct: 770  NQYIMDSWNYGSPQRRSRAILTIAAPGLQPIMQPYHTHRRSDEEVRGRSLGQLPNGEFCA 829

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
             R      PF  +        LP +G   ++T + Y +  +        G    L D I 
Sbjct: 830  GRQYY-PTPFYHVPAETVSSGLPDIGYSTAQTCIPYPDHRIPCVPT---GKDRALLDCIP 885

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            KE               PG  + +  +  +              +P   +R  +    + 
Sbjct: 886  KEP--------------PGCGYKEAEELGI--------------IPPYLRRKREIGKSYQ 917

Query: 1472 RLDWEGNFPTSITDP-QPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
            R+   G  PT  T       + G   H ++ R ++++E  R+QG  D+    G+I+ + R
Sbjct: 918  RIKRAGLVPTITTSACISDARSGAVVHWEESRSISLQEARRAQGIDDTEPIIGTIRDQWR 977

Query: 1531 QIGNAVPPTLAFALGRKLKEAVES 1554
              GN V   + FA+G  L  AVES
Sbjct: 978  IAGNGVDRKVGFAIGLGLLRAVES 1001


>gi|121635670|ref|YP_975915.1| cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|218767413|ref|YP_002341925.1| cytosine-specific DNA methylase [Neisseria meningitidis Z2491]
 gi|385324953|ref|YP_005879392.1| putative cytosine-specific methyltransferase [Neisseria meningitidis
            8013]
 gi|385337262|ref|YP_005891135.1| putative cytosine-specific methyltransferase [Neisseria meningitidis
            WUE 2594]
 gi|416179979|ref|ZP_11611281.1| modification methylase [Neisseria meningitidis M6190]
 gi|120867376|emb|CAM11148.1| modification methylase (cytosine-specific DNA methylase) [Neisseria
            meningitidis FAM18]
 gi|121051421|emb|CAM07714.1| modification methylase (cytosine-specific DNA methylase) [Neisseria
            meningitidis Z2491]
 gi|261393340|emb|CAX50974.1| putative cytosine-specific methyltransferase [Neisseria meningitidis
            8013]
 gi|319409676|emb|CBY89977.1| putative cytosine-specific methyltransferase [Neisseria meningitidis
            WUE 2594]
 gi|325131421|gb|EGC54130.1| modification methylase [Neisseria meningitidis M6190]
          Length = 351

 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 180/449 (40%), Gaps = 112/449 (24%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + + L  +D F G GG+S G+Q +GI      I+YE    E ++ N         N   I
Sbjct: 2    KNSKLKAVDFFCGGGGMSYGMQSAGIQVLA-GIDYEPSCKETYEANI--------NAKFI 52

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
               V E            E  E    L +N  + + +        G  PCQ         
Sbjct: 53   QADVFE---------LQPETLEKELGLKKNDDDLILI--------GCSPCQ--------- 86

Query: 1237 QSTWSKVQCE---------MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
               WS +Q +         ++L F  F +YF P Y ++ENV   +S  K       +  L
Sbjct: 87   --YWSVIQTDKRKSEKSKSLLLEFQRFVEYFNPGYVVVENVPGILSRMKESRLDNFIKLL 144

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             E G+ V FGI     +G+ QSRKR  + A   +    E  EP+                
Sbjct: 145  EEKGFTVHFGIHNTADYGIPQSRKRFTLIA---NRITKEKLEPV---------------- 185

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
            +YS  R          +TVRD +G    + NG  K I  +Q++                T
Sbjct: 186  KYSGKR----------LTVRDVLG----MENGFPKIIAGHQDE----------------T 215

Query: 1408 D--HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            D  H    ++++NL R   IPK  G           +L+   + +L   C      + N 
Sbjct: 216  DFMHSCAGLSDINLKRLALIPKNGGN----------RLAFAHIPELQLECF---IGKDNS 262

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH-GS 1524
            +K  FGRL W+   PT  T    +   G   HP++DR L++RE A  Q FP +Y F  GS
Sbjct: 263  FKDTFGRLWWDKPAPTITTKFFSISN-GRFAHPEEDRALSLREGATLQSFPRNYVFKAGS 321

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 R IGNAVPP  A  +GR + + +E
Sbjct: 322  RDKIARLIGNAVPPMYAEKIGRAIVDNIE 350


>gi|257464589|ref|ZP_05628960.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
            202]
 gi|257450249|gb|EEV24292.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
            202]
          Length = 331

 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 171/426 (40%), Gaps = 109/426 (25%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GG S G  + G      ++E E    E ++ N P+        +++ R +
Sbjct: 3    LTYIDLFSGAGGFSLGFDRVGFCQL-LSVEIEPYYCETYRANFPKH-------HILQRDL 54

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
             E   D           EL   LD           +VD + GGPPCQGFS   +  ++  
Sbjct: 55   TELPDD-----------ELLVLLDNQ---------KVDVVIGGPPCQGFSMAGKIGRTFA 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   F+      QPR+F++ENV    + N G+T    +     +GYQV   +L 
Sbjct: 95   DDPRNHLFKEFVRVVKLTQPRFFVMENVARLFTHNSGRTRTEIIQHFESLGYQVECKVLN 154

Query: 1301 AGAFGVSQSRKR-AFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            A  FGV Q R R  FI        L  +PEP H               +Y          
Sbjct: 155  AADFGVPQLRSRIVFIGRKDKGKIL--FPEPSH--------------REYK--------- 189

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                 TV + IG  P + +G +  I+ ++                    H  + + +++ 
Sbjct: 190  -----TVGEAIGHFPPLNSGENSLIVNHE-----------------AMRHSDQMLEKMSF 227

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
            ++        G + +D+P E ++  +G V   I         R++  K            
Sbjct: 228  VKN-------GGNRNDIP-ESLRPISGDVRKYI---------RYHSEK------------ 258

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
              S+     M KV   FH +Q+R LTVRE A  Q FPD + F G    + +Q+GNAVPP 
Sbjct: 259  -PSVCVTGDMRKV---FHYEQNRALTVRELAALQSFPDDFVFLGQRIAQQQQVGNAVPPL 314

Query: 1540 LAFALG 1545
            LA A+ 
Sbjct: 315  LAQAIA 320


>gi|1709158|sp|P50192.1|MTHA_HAEPH RecName: Full=Modification methylase HphIA; Short=M.HphIA; AltName:
            Full=Cytosine-specific methyltransferase HphIA; AltName:
            Full=M.Hphi(C)
 gi|732729|emb|CAA59690.1| site-specific DNA-methyltransferase (cytosine-specific) [Haemophilus
            parahaemolyticus]
          Length = 372

 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 175/425 (41%), Gaps = 107/425 (25%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+F+G GG S G  ++G      ++E E    + ++ N P+  +L           
Sbjct: 45   LTYIDLFSGAGGFSLGFDRAGFHQL-LSVEIEPHYCDTYRANFPDHQVL----------- 92

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                   +D  + S         D+N++ ++    +VD + GGPPCQGFS   +  ++  
Sbjct: 93   ------QQDLTTLS---------DDNLLRHIN-HRKVDVVIGGPPCQGFSMAGKIGRTFA 136

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   F+      QP++F++ENV    + N G+T          +GY+V+  +L 
Sbjct: 137  DDPRNHLFKEFVRVVKLTQPKFFVMENVARLFTHNSGKTRAEITEQFERLGYKVKCKVLN 196

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  FGV Q R R  ++          +PEP H               +Y+          
Sbjct: 197  AADFGVPQLRSR-IVFIGRKDGGEITFPEPSHT--------------EYN---------- 231

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
                TV D IG  P +  G +  I+ ++                   +H ++ + +++ +
Sbjct: 232  ----TVGDAIGHFPKLNAGENSLILNHE-----------------AMNHSTQMLEKMSFV 270

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
                   + G D +D+P E ++  +G V   I         R++  K             
Sbjct: 271  -------KNGGDRNDIP-ESLRPISGDVRKYI---------RYHSDK------------- 300

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540
             S+     M KV   FH +Q+R LTVRE A  Q FPD + F G    + +Q+GNAVPP L
Sbjct: 301  PSVCVTGDMRKV---FHYEQNRALTVRELAALQSFPDDFVFLGKKIAQQQQVGNAVPPLL 357

Query: 1541 AFALG 1545
            A A+ 
Sbjct: 358  AQAIA 362


>gi|307103701|gb|EFN51959.1| hypothetical protein CHLNCDRAFT_139634 [Chlorella variabilis]
          Length = 1149

 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 151/376 (40%), Gaps = 86/376 (22%)

Query: 1247 MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGV 1306
            ++  FL+        Y ++ENV   +S   G+T +  L   + MGYQ  F +L AG FG 
Sbjct: 776  LLCTFLTALSKLGWPYAIIENVTGLLS--AGETMQCVLQCCVSMGYQASFRLLNAGCFGT 833

Query: 1307 SQS-----------------RKRAFIWAASPHDTLPEWPEPMHVFA-------APELKIM 1342
            +Q+                 R+R  I  +      P  P P   F        A E  + 
Sbjct: 834  AQASASVVAGASGLSVDQPHRRRVIILLSLHGLPHPHHPVPTTCFQGAGGYSRAGECSLE 893

Query: 1343 LSDNYQYSAVRS-------TANGAPFRAMTVRDTIGDLP-AVGNGAS---------KTIM 1385
                  Y AV             AP  A+   + IGDLP   G  A+             
Sbjct: 894  ARREMAYRAVPRCWRRNVVVPTNAPLPALAAAEVIGDLPEQAGPDAAYGVPACPAVAAAA 953

Query: 1386 EYQNDPVSWFQKRIRGNMAV---LTDHISKEMNELNLIRCQKIPK--------------- 1427
                  + W+  R+RG       L +H +  +++ +  R   +P+               
Sbjct: 954  AAPGGELGWYATRMRGGAGAGDALRNHQTTNLSQESQERLAALPREGQEGWELSKGAWAG 1013

Query: 1428 --------RPGADWHDLPDEKV--KLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
                    R   DW DLP   +  +L   Q+V       P+         G FGRL W  
Sbjct: 1014 PPAQPFLPRRAGDWRDLPACLIPDRLRGRQLV-------PSNV-------GQFGRLLWLS 1059

Query: 1478 NFPTSITDPQPMGKV-GMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
            +F T +T P+   K      HP  DR LTVRE AR QG PD+  FHG+I   ++Q+GNAV
Sbjct: 1060 HFGTCLTSPKLNSKTTSTTVHPSADRPLTVREAARVQGVPDAVTFHGTITEAYKQVGNAV 1119

Query: 1537 PPTLAFALGRKLKEAV 1552
            PP LA A+GR+L++A+
Sbjct: 1120 PPPLAEAIGRELRKAM 1135


>gi|406916736|gb|EKD55687.1| hypothetical protein ACD_59C00074G0004 [uncultured bacterium]
          Length = 341

 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 178/421 (42%), Gaps = 105/421 (24%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+GCGGLSEG++++G +     +E ++ A E +K+NHPE+L++              
Sbjct: 7    IDLFSGCGGLSEGMKKAG-AQVIACVEIDKVAAECYKINHPETLVI-------------- 51

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST-WSK 1242
                          E    +  N +  L     V  + G PPCQGFS +   N++     
Sbjct: 52   -------------NEDIRKIKHNKLKRLLAGKPVHILAGCPPCQGFSTVRMLNKTVAIDD 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + ++IL +  F    +P  F++ENV    +++    F  T+  L +MGY + + +++  
Sbjct: 99   ERNDLILEYYRFIKEIKPLTFMMENVPALKNYD---LFLTTVKKLEKMGYFIDYDVVDIQ 155

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             +GV Q RKR  +  +                   E+KI+     + S +R         
Sbjct: 156  NYGVPQRRKRLIMLGS----------------ILGEIKIV-----RDSGLRK-------- 186

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
              TVRD IG+L +V N          ND +          +A+ +  I+K ++       
Sbjct: 187  --TVRDYIGNLESVDN---------TNDDIHKI-------VAIHSPRINKLIS------- 221

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
              IPK  G    DLP +              + L    K    +  ++GRL W+ +  ++
Sbjct: 222  -LIPK-DGGGRRDLPQK--------------YILDCHKKTGIGFHDVYGRLKWD-SVSST 264

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH--RQIGNAVPPTL 1540
            IT        G   HP+++R ++ RE A  Q FP  Y+F   I        IGNA+PP  
Sbjct: 265  ITGGCLNPSKGRYLHPEENRCISAREAALLQTFPRDYKFPEGITKTEIALLIGNALPPEF 324

Query: 1541 A 1541
            +
Sbjct: 325  S 325


>gi|387879685|ref|YP_006309988.1| cytosine methyl transferase [Streptococcus parasanguinis FW213]
 gi|386793137|gb|AFJ26172.1| cytosine methyl transferase [Streptococcus parasanguinis FW213]
          Length = 354

 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 190/448 (42%), Gaps = 118/448 (26%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F G GGL+ G+QQ+GI+      + +  +  A++ N        NN   IL+ V
Sbjct: 8    INAVDLFCGVGGLTCGIQQAGINVVA-GYDIDSRSQFAYEFN--------NNAKFILKDV 58

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNL-PLPGQVDFINGGPPCQGFSGMN---RFN 1236
             E                    +D   I+NL P    +  + G  PCQ FS  +   + N
Sbjct: 59   KE--------------------IDNQEISNLYPDDTDIKILMGCAPCQPFSTYSHKYKNN 98

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
            ++T  K+  +++  F    +Y QP    +ENV   V   K + F   +  L++  Y + +
Sbjct: 99   ENTLQKM--DLLAYFGQQIEYVQPDIVSMENVPQMV---KEKVFEDFIHILMKNNYSIDY 153

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLS----DNYQYSAV 1352
             ++ A  +GV Q RKR  + A+                   E+K++ +    DNY     
Sbjct: 154  KLVYAPDYGVPQKRKRLLLLASK----------------IGEIKLIPAQFNKDNYP---- 193

Query: 1353 RSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISK 1412
                        T+RDTIG+LP +  G +       NDP+                H S+
Sbjct: 194  ------------TLRDTIGNLPELKAGDTDL-----NDPL----------------HRSR 220

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             ++ELN+ R ++   +PG  W D  DE++ L   +             K    ++ ++GR
Sbjct: 221  NLSELNMKRIKQ--SKPGGTWKDW-DEELLLEAYK------------KKSGESFRSVYGR 265

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-------HGSI 1525
            L+W+    T  T    +G  G   HP+QDR L++RE A  Q FP  Y F       +  I
Sbjct: 266  LEWDQPSNTITTQFPGIGN-GRFGHPEQDRALSLREGAMLQTFPREYLFTDPNLGGNYPI 324

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 QIGNAVPP L   +G+ +   +E
Sbjct: 325  AQVALQIGNAVPPKLGEVIGQSILNHLE 352


>gi|282897137|ref|ZP_06305139.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
 gi|281197789|gb|EFA72683.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
          Length = 435

 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 179/456 (39%), Gaps = 91/456 (19%)

Query: 1111 KQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLI 1170
             Q    Q+     +D+F+G GGLS G++ +G      +IE +         N P      
Sbjct: 2    NQNKEGQKRRPIAIDLFSGAGGLSLGIESAGFEVV-ISIEIDPVHSAIHNYNFP------ 54

Query: 1171 NNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS 1230
             NC  I R +           S   + EL   L++  IN      +VD + GGPPCQGFS
Sbjct: 55   -NCANICRDI-----------SNVSSEELWNILNDKHIN------EVDLLAGGPPCQGFS 96

Query: 1231 GMN-RFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLE 1289
             M  R  +   +K    ++  ++      +PRYF+ ENV   V               ++
Sbjct: 97   QMGYRHIEDPRNK----LVFEYVRVVRDIKPRYFIFENVPGIVCGKHKGFIEDLCHEFIQ 152

Query: 1290 MGYQ--VRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
            +GY   V   IL A  FGV+Q+R R  +         P +PE            +     
Sbjct: 153  IGYNTIVPVLILNAADFGVAQNRSRLILLGWRKDMPKPVYPE-----------TLFEKTT 201

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVG------NGASKTIMEYQN-------DPVSW 1394
              S  R  ++  P+  +   D + DL  V        G S   ++Y         +P   
Sbjct: 202  ANSKSREPSSLPPW--LGASDVLSDLEGVSVFIGKDEGISPNKLDYYGLRCNFSFEPNGV 259

Query: 1395 FQKRIRGNMA--VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLI 1452
            F    R      ++  H+S    E +++R + +P            + V   T ++  L 
Sbjct: 260  FHLCHRRTFTEKLIYGHLSSTHTEQSIVRFKNVP------------QGVVEPTTRLFKLH 307

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
            P+   NT +     K              + T P+P+       H    R +++RE AR 
Sbjct: 308  PYRPSNTLRAGTDSKR------------GAHTAPRPI-------HYSHPRCISIREAARL 348

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
              FPD +QFH +I H HRQIGN+VPP LA  + + L
Sbjct: 349  HSFPDWFQFHRTIWHGHRQIGNSVPPLLAKEIAQSL 384


>gi|448332895|ref|ZP_21522115.1| DNA-cytosine methyltransferase [Natrinema pellirubrum DSM 15624]
 gi|445624739|gb|ELY78114.1| DNA-cytosine methyltransferase [Natrinema pellirubrum DSM 15624]
          Length = 432

 Score =  113 bits (283), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 200/482 (41%), Gaps = 101/482 (20%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            +HL  +D+F G GG+S GL+++G     WA++ +  A +  + N P++            
Sbjct: 3    DHLTAIDLFCGAGGISAGLKEAGFD-ILWAVDNDADAIKTHRHNFPDT------------ 49

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF--- 1235
                K G       T +  EL    D  V+ +   PG++D I GGPPC  FS + R    
Sbjct: 50   ----KYG-----AITGDMTEL----DPEVVLDDIEPGELDLIAGGPPCPTFSMIGRSKIR 96

Query: 1236 ---NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS---FNKGQTFRLTLASLLE 1289
               ++S  S  + ++   FL F +   PR FL+ENV   +S    N      +    + E
Sbjct: 97   SLDDKSPESDDRHQLYEDFLRFVESLSPRAFLMENVTGMLSSTGANGDSIVDIICNQMEE 156

Query: 1290 MGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT----LPEWP---EP-------MHVFA 1335
            +GY V    ++A  FGV Q R R F +     DT    L  W    EP       M +  
Sbjct: 157  LGYTVDVQKVDAANFGVPQHRTRLF-FIGQREDTDRIDLENWETHREPKNEKERNMKLRT 215

Query: 1336 APE-----LKIMLSD------NYQYSAVRSTANGAPFRAMTVRDTIGDLPAV---GNGAS 1381
             P+      +  ++D       +++      A   P+  +TV D I DLP +   G    
Sbjct: 216  EPDAFHDTTQSTITDFGVEIEEFEHDFQEHPAEKQPY--VTVADAIMDLPPLSPSGGMPP 273

Query: 1382 KTIMEYQNDPVSWFQKRIRG-------NMAVLTDHISKEMNELNLIRCQKIPKRPGADWH 1434
            K   +Y    ++ +Q+  R          A LT+H S+  N  +L   + +         
Sbjct: 274  KESTDYTVPALTRYQEWARDLPEGTDWKDANLTNHSSRGHNLKDLTLYKIL--------- 324

Query: 1435 DLPDEKVKLSTGQVVD-LIPW---CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG 1490
                E V  + G V   L P+      ++ K+ +             N P S        
Sbjct: 325  ---GEGVGWNIGDVASTLQPYRDDIFTDSYKKQHP------------NEPASTIVAHLQK 369

Query: 1491 KVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
               M  HP + R L+VRE AR Q F DS++F  S  +  R +GNAVPP LA A+G  +++
Sbjct: 370  DGHMFIHPREARSLSVREAARLQSFRDSFEFPVSRTNGFRLVGNAVPPLLAKAIGTAIRD 429

Query: 1551 AV 1552
             +
Sbjct: 430  EL 431


>gi|254416815|ref|ZP_05030564.1| DNA-cytosine methyltransferase superfamily [Coleofasciculus
            chthonoplastes PCC 7420]
 gi|196176361|gb|EDX71376.1| DNA-cytosine methyltransferase superfamily [Coleofasciculus
            chthonoplastes PCC 7420]
          Length = 391

 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 185/455 (40%), Gaps = 107/455 (23%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            ++ +F+G  GL  GL+ +G  +    +E +  + +   LN P       + + I RA+ E
Sbjct: 8    SISLFSGAFGLDLGLELAGFHTVS-VVEKDRDSVKTIALNRP-----YLHESAIPRAI-E 60

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                 +  +          +L          P +VD + GG PCQ FS   +  +++   
Sbjct: 61   TISTQDLLLEGGRVLGKGRALR---------PNEVDLVVGGAPCQPFSTAGK--RASVLD 109

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFN---------------------KGQTFR 1281
             +  + + F+      QPR+F++ENV+  +S                       +G   +
Sbjct: 110  PRGSLFMEFVRVVRDIQPRFFVMENVKGLLSAAIRHRPINQRGADYPPLEPDEMRGAALQ 169

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
            + LA + E+GY+V + +L+A  +GV Q+R+R     +   +++  +P   H  +  +L  
Sbjct: 170  VVLAEMHELGYKVVYNLLQAADYGVPQNRERVVFIGSRDSESV-TFPLATHCQSGRDLP- 227

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
                                +  T+RD + +L              + +P          
Sbjct: 228  --------------------KWRTLRDALTNL-------------VEQNPE--------- 245

Query: 1402 NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK 1461
                 T +  K +  L L++        G +W  LP+   + + G              K
Sbjct: 246  ----FTPYSEKRLKYLRLLKS-------GQNWRYLPENLKEEAMG-----------GAYK 283

Query: 1462 RHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF 1521
                  G + RL W+   PT  T PQ      MC HP + R LT+RECAR Q FPD + F
Sbjct: 284  SGGGKVGFYRRLSWDKPSPTVTTSPQ-QKATDMC-HPVELRPLTMRECARIQTFPDDWIF 341

Query: 1522 HGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESKR 1556
             GSI  K++QIGNAVP  LA A+G  L   ++  +
Sbjct: 342  CGSITSKYKQIGNAVPVGLAKAIGTYLYSLIKGDK 376


>gi|428319250|ref|YP_007117132.1| DNA-cytosine methyltransferase [Oscillatoria nigro-viridis PCC 7112]
 gi|428242930|gb|AFZ08716.1| DNA-cytosine methyltransferase [Oscillatoria nigro-viridis PCC 7112]
          Length = 420

 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 193/445 (43%), Gaps = 83/445 (18%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG++ G +Q+G      ++E +       + N P        C+++ + V  
Sbjct: 11   AVDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHEFNFPL-------CSILCKDVTA 62

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G        SE  + +A              ++D +  G PCQGFS M + +      
Sbjct: 63   LTG--------SEIRKKSALGRR----------EIDVVISGSPCQGFSMMGKRDVD---D 101

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             +  +I  F       +P++F++ENV    S    +   + ++S L+ GY+V   + +L 
Sbjct: 102  PRNSLIFHFQRLVLELKPKFFVMENVPGIASGEHKELLNILISSFLKCGYKVEENYQVLN 161

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+RKR F+        LP++P+   +   P++KI      +Y  +   A    
Sbjct: 162  AVNYGVPQARKRLFLIGCKEGYELPKYPQQTTIL--PKIKI----PKRYKKINLPA---- 211

Query: 1361 FRAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                TV D IGDLP V N +        I EY     S +   +RG   +  D+      
Sbjct: 212  --VPTVWDAIGDLPDVDNYSELLHRDWVIAEYGK--CSTYASIMRGIDGLDDDYSYDREY 267

Query: 1416 ELNLIRC-------QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR-HNQWK 1467
            +  ++ C       Q+  +R  A  H    EK  +S  +   L P  + NT +   ++ +
Sbjct: 268  DRQILSCSLRTKHSQECMERFQAAKH---GEKEPIS--RFYKLHPDGVCNTLRAGTDRAR 322

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
            G +             T P+P+       HP   R +TVRE AR   +PD ++FH +  H
Sbjct: 323  GAY-------------TSPRPI-------HPIAPRCITVREAARLHSYPDWFRFHVTKWH 362

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAV 1552
              RQ+GN+VPP LA A+  ++  A+
Sbjct: 363  GFRQVGNSVPPLLAKAVAAQIISAL 387


>gi|411007690|ref|ZP_11384019.1| putative methyltransferase [Streptomyces globisporus C-1027]
          Length = 408

 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 178/445 (40%), Gaps = 101/445 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGIS-----STKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            L  +D+FAGCGGL+ G+ Q+          + A+++E    + FK N P           
Sbjct: 22   LRVVDLFAGCGGLTLGVAQAAHKRDVSLDVRLAVDFEAAPTKVFKANFP----------- 70

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                   K    E  V +    +L ASL    I      G+V  + GGPPCQG S +N  
Sbjct: 71   -------KANVQEGSVESYFDGDLGASLTTQEIATRSTVGEVGLLIGGPPCQGHSNLN-- 121

Query: 1236 NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR 1295
            N +     +  + L     A+  +PR  ++ENV   V+ +K Q     +  L ++GY V 
Sbjct: 122  NHTRRDDPKNRLYLRMARAAEVLRPRAVVIENVLAVVN-DKQQVVSRAIVHLRKLGYDVA 180

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
               ++    GV+Q+RKR  + A    D LP        F      ++  ++++ +     
Sbjct: 181  TSRIDLLKLGVAQTRKRHILLAIR-EDALP--------FGFSAADLLQVEDHKAA----- 226

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                   A  +R  IGDL  V     K+  +    P +  Q+R    M  L ++      
Sbjct: 227  -------AHDLRWAIGDLLDV---RPKSFFDEAAVPNADNQRR----MKYLFEN------ 266

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
                            D H+LP+E+                P   +  + +  ++GRL W
Sbjct: 267  ----------------DEHNLPNEE---------------RPECHQGEHNYTSMYGRLWW 295

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ---- 1531
            +    T  +    MG+ G   HP+  R LT  E AR QGFPD ++F         +    
Sbjct: 296  DRPAQTITSGFATMGR-GRFVHPEVPRCLTAHEAARIQGFPDYFKFVDERMKPRYELTRT 354

Query: 1532 -----IGNAVPPTLAFALGRKLKEA 1551
                 IGNAVPP L  AL  KL +A
Sbjct: 355  EVQVIIGNAVPPPLTEALTSKLFDA 379


>gi|220909632|ref|YP_002484943.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866243|gb|ACL46582.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7425]
          Length = 359

 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 141/325 (43%), Gaps = 54/325 (16%)

Query: 1224 PPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            PPC GFS  N  N       +  +++    F   F P + ++ENV+  +   +   F   
Sbjct: 80   PPCTGFSQKNSKNHLN-DDPRNRLVVRTADFVAEFLPEFLVMENVKELLQGKQKHHFLKL 138

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
               L  + Y V   + +   +G+ Q R RA I A         W            +   
Sbjct: 139  REHLEALDYSVFSQVHDLSKYGLPQRRDRALILA---------W------------RKGK 177

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM 1403
             +++Q  AV+        R  TVRDTI  LP +  GA        ND +           
Sbjct: 178  VNSFQLEAVQ--------RKFTVRDTISHLPPLKAGAIDP-----NDKM----------- 213

Query: 1404 AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH 1463
                 H+   ++   L R + IPK  G  W D+ ++   LS  +   L+   + NT +R 
Sbjct: 214  -----HVCPSVSPTVLNRIRAIPKD-GGSWGDVMNDP-NLSDNEKKQLLIPSMFNTKRRK 266

Query: 1464 NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHG 1523
              +  ++GRL W+    T   +   +G  G   HP+QDR+LTVRE A  QGFP  Y F G
Sbjct: 267  GSFPDVYGRLKWDELAATITRECGHVGN-GRYTHPEQDRLLTVREMALLQGFPKEYIFEG 325

Query: 1524 SIQHKHRQIGNAVPPTLAFALGRKL 1548
            ++  K+RQIG+AVPP +A  +  +L
Sbjct: 326  ALSAKYRQIGDAVPPIIAEQIAYRL 350


>gi|433591427|ref|YP_007280923.1| DNA-methyltransferase Dcm [Natrinema pellirubrum DSM 15624]
 gi|433306207|gb|AGB32019.1| DNA-methyltransferase Dcm [Natrinema pellirubrum DSM 15624]
          Length = 438

 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 201/485 (41%), Gaps = 101/485 (20%)

Query: 1116 SQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNV 1175
            +  +HL  +D+F G GG+S GL+++G     WA++ +  A +  + N P++         
Sbjct: 6    TMSDHLTAIDLFCGAGGISAGLKEAGF-DILWAVDNDADAIKTHRHNFPDT--------- 55

Query: 1176 ILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235
                   K G       T +  E    LD  V+ +   PG++D I GGPPC  FS + R 
Sbjct: 56   -------KYG-----AITGDMTE----LDPEVVLDDIEPGELDLIAGGPPCPTFSMIGRS 99

Query: 1236 ------NQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS---FNKGQTFRLTLAS 1286
                  ++S  S  + ++   FL F +   PR FL+ENV   +S    N      +    
Sbjct: 100  KIRSLDDKSPESDDRHQLYEDFLRFVESLSPRAFLMENVTGMLSSTGANGDSIVDIICNQ 159

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT----LPEWP---EP-------MH 1332
            + E+GY V    ++A  FGV Q R R F +     DT    L  W    EP       M 
Sbjct: 160  MEELGYTVDVQKVDAANFGVPQHRTRLF-FIGQREDTDRIDLENWETHREPKNEKERNMK 218

Query: 1333 VFAAPE-----LKIMLSD------NYQYSAVRSTANGAPFRAMTVRDTIGDLPAV---GN 1378
            +   P+      +  ++D       +++      A   P+  +TV D I DLP +   G 
Sbjct: 219  LRTEPDAFHDTTQSTITDFGVEIEEFEHDFQEHPAEKQPY--VTVADAIMDLPPLSPSGG 276

Query: 1379 GASKTIMEYQNDPVSWFQKRIRG-------NMAVLTDHISKEMNELNLIRCQKIPKRPGA 1431
               K   +Y    ++ +Q+  R          A LT+H S+  N  +L   + +      
Sbjct: 277  MPPKESTDYTVPALTRYQEWARDLPEGTDWKDANLTNHSSRGHNLKDLTLYKIL------ 330

Query: 1432 DWHDLPDEKVKLSTGQVVD-LIPW---CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ 1487
                   E V  + G V   L P+      ++ K+ +             N P S     
Sbjct: 331  ------GEGVGWNIGDVASTLQPYRDDIFTDSYKKQHP------------NEPASTIVAH 372

Query: 1488 PMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRK 1547
                  M  HP + R L+VRE AR Q F DS++F  S  +  R +GNAVPP LA A+G  
Sbjct: 373  LQKDGHMFIHPREARSLSVREAARLQSFRDSFEFPVSRTNGFRLVGNAVPPLLAKAIGTA 432

Query: 1548 LKEAV 1552
            +++ +
Sbjct: 433  IRDEL 437


>gi|78189586|ref|YP_379924.1| C-5 cytosine-specific DNA methylase [Chlorobium chlorochromatii CaD3]
 gi|78171785|gb|ABB28881.1| C-5 cytosine-specific DNA methylase [Chlorobium chlorochromatii CaD3]
          Length = 359

 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 185/441 (41%), Gaps = 99/441 (22%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            +N+++ +D+F G GGL+ GL++SGI   K  I+ +E    +F+                 
Sbjct: 4    QNNISAIDLFCGIGGLTYGLKKSGIQ-VKAGIDIDESCRYSFE----------------- 45

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                E CG       T    +    L +  +N++    ++  + G  PCQ FS    + +
Sbjct: 46   ----ENCG-------TKFINKDIQKLQKEELNSIYGNAEIKILVGCAPCQPFSSYT-YKK 93

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
                  + +++  F       +P    +ENV   ++F K   F   +  L    Y+V F 
Sbjct: 94   DKNKDKKWQLLYDFSRLIKETKPAIISMENVPTLLNFKKAPVFYDFIQELTANSYKVWFN 153

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            I+ +  +G+ Q R+R  + A+   D   E   P H            DNY          
Sbjct: 154  IVYSPDYGIPQKRRRLVLLASKLGDI--ELLPPTHN----------PDNY---------- 191

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                  +TV+D IG+L A+ +G +      QND +                H + +++E+
Sbjct: 192  ------ITVKDAIGNLEAIKSGETS-----QNDFI----------------HKAAQLSEI 224

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
            NL R ++    PG  W    D+++KL            + +T ++   +  ++GR+ W  
Sbjct: 225  NLSRIKQ--SIPGGSWKKDWDDELKL------------VCHTKEKGKTYVSVYGRMMWNE 270

Query: 1478 NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS-----IQHKHRQI 1532
              PT  T    +G  G   HP+Q+R +++RE A  Q FP  Y+F  +          + I
Sbjct: 271  PSPTMTTFCTGIGN-GRFGHPEQNRAISLREAAILQSFPADYKFAENEATLKFGKTSKHI 329

Query: 1533 GNAVPPTLAFALGRKLKEAVE 1553
            GNAVPP L   +G+ + + +E
Sbjct: 330  GNAVPPKLGEIIGKSILQHLE 350


>gi|16331413|ref|NP_442141.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|383323154|ref|YP_005384007.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803
            substr. GT-I]
 gi|383326323|ref|YP_005387176.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803
            substr. PCC-P]
 gi|383492207|ref|YP_005409883.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803
            substr. PCC-N]
 gi|384437475|ref|YP_005652199.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|451815566|ref|YP_007452018.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|1001584|dbj|BAA10211.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|339274507|dbj|BAK50994.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|359272473|dbj|BAL29992.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803
            substr. GT-I]
 gi|359275643|dbj|BAL33161.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803
            substr. PCC-N]
 gi|359278813|dbj|BAL36330.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803
            substr. PCC-P]
 gi|407961204|dbj|BAM54444.1| cytosine-specific methyltransferase [Bacillus subtilis BEST7613]
 gi|451781535|gb|AGF52504.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
          Length = 424

 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 182/446 (40%), Gaps = 80/446 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAGCGG+S GL+ +G      A+E++         N P  + +             
Sbjct: 6    AIDLFAGCGGMSLGLEAAGFD-IAAAVEFDAVHCLVHHHNFPYGVTI------------- 51

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
             C D    ++   A E+   L     NN      +D I GGPPCQGFS M +        
Sbjct: 52   -CRD----IALVSAGEILRKL-----NNKGYSSDIDLIAGGPPCQGFSLMGK---RQLDD 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILE 1300
             +  ++  ++      +P+YFL ENV    S    +     +     +GY +     +L+
Sbjct: 99   PRNSLVFEYVRMIRDLKPKYFLFENVPGMRSGQHKKFLEELVREFETIGYHIEKPILVLD 158

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +G  Q RKR  I  +        +P P++ F   ELK     N    +V + A   P
Sbjct: 159  ASLYGAPQKRKRLIILGSRKDVKPVTYPLPLY-FDVAELK---QSNCSEKSVSNIAYKPP 214

Query: 1361 FR-AMTVRDTIGDLP-AVG--NGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            F     + D +   P AVG   G    +++Y     S+    I  N A    H  +++N 
Sbjct: 215  FTCGEAIDDLVDHTPYAVGEDQGIPSELLDYSALRKSY---AIHANGAFSLCH-KRQVN- 269

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
             NL+            +  +  +  + S  +  D +P  +  T++        F RL   
Sbjct: 270  -NLV------------YGHIGSQHTEKSMKRFADTVPGTVERTSR--------FLRLSKT 308

Query: 1477 GNFPT----------SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ 1526
            G   T          + T P+P+       H    R +TVRE AR   +PD +QFH +I 
Sbjct: 309  GLCNTLRAGTASDKGAYTAPRPI-------HYALPRCITVREAARLHTYPDWFQFHNTIW 361

Query: 1527 HKHRQIGNAVPPTLAFALGRKLKEAV 1552
            H  R+IGN+V P LA  LG ++  A+
Sbjct: 362  HGFREIGNSVVPLLAKVLGEQVMAAL 387


>gi|284928852|ref|YP_003421374.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
 gi|284809311|gb|ADB95016.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
          Length = 422

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 178/439 (40%), Gaps = 80/439 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      ++E +     A   N P    + ++ ++I    +  
Sbjct: 9    IDLFAGVGGMTLGFEQAGF-DVLGSVEIDPIHCAAHHYNFPFWTTICSDISIINAKTIRN 67

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                  C+   E                     +D + GGPPCQGFS + + N       
Sbjct: 68   LS----CIGNRE---------------------IDVVFGGPPCQGFSLIGKRNP---KDN 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            +  +I  F+      QP+YF++ENV    + N            +   Y++   + IL A
Sbjct: 100  RNNLIKHFIRLVIELQPKYFVIENVPGMATKNNQAFLEEIFDEFIANNYRIETNYKILNA 159

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q RKR FI        LP++P+                NY    + ST    P 
Sbjct: 160  ANYGVPQIRKRLFIMGGKSDLPLPDYPQ-------------FLTNYN-QEINSTIPFTP- 204

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI- 1420
               TV   I DLP V +    +  +      S     ++G +    +   K + + NL+ 
Sbjct: 205  ---TVSQAINDLPEVNHYPELSYKDSMKVNSSKLNDYVKGLLDSNDNFSYKRIYDKNLLT 261

Query: 1421 ------RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
                     K+ +R    ++  P  K K    +   L P  L NT +         G   
Sbjct: 262  SSFRTKHTTKLIER----FNKTPQGK-KEPISRFFKLHPEGLCNTLRA--------GTPS 308

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
              G++    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ+GN
Sbjct: 309  NRGSY----TSPRPI-------HPFTPRCITVREAARLHSYPDWFRFHVTKWHGFRQVGN 357

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            +VPP LA A+ +++ + ++
Sbjct: 358  SVPPLLAKAIAKEILKTLD 376


>gi|381402080|ref|ZP_09926961.1| site-specific DNA-methyltransferase [Kingella kingae PYKK081]
 gi|380832889|gb|EIC12776.1| site-specific DNA-methyltransferase [Kingella kingae PYKK081]
          Length = 395

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 182/437 (41%), Gaps = 85/437 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAGCGG+S G + +G  S   A+E +  A E ++ NH ++ + +             
Sbjct: 5    IDLFAGCGGMSLGFEMAGFQSV-LAVEKDAWAAETYQFNHQDTFVHV------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD  +  +  +  +      EN+            I GGPPCQGFS     +       
Sbjct: 51   -GDITEIANPKQIFDY-----ENISG----------IIGGPPCQGFSLSGSRDPK---DP 91

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVS--FNKGQTFRLTLASL-LEMGYQVRFGILE 1300
            +  + + ++ F   F P +F++ENV   +S     GQ  +  ++S+ L  GY V    L 
Sbjct: 92   RNSLFMDYMRFVGDFNPSFFVMENVPGILSAKTKNGQLVKEVISSVALSHGYNVHILHLN 151

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R R F        +       +  +  PE KI                   
Sbjct: 152  AANYGVPQARNRIFFIGIRQDYSF------IMRYLQPE-KITTD---------------- 188

Query: 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLI 1420
             + +T+ D I DLP +  G    +++Y + P + +Q   R +   + +HIS +  +  + 
Sbjct: 189  -KPITLWDAISDLPQIEAGQGVEVVDYADLPKNTYQAWCREHSNAIHNHISMKHTQRLIE 247

Query: 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFP 1480
            R + I    G    D+P+E  +   G   ++       + K ++Q   +  R D     P
Sbjct: 248  RFKCI--EWGQSVADVPEEHKQRKRGDATEI-------SGKTYSQ-NNMRPRPDKPA--P 295

Query: 1481 TSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQ--------HKHRQI 1532
            T      P        HP   R  T RE AR Q FPD+Y F G            + +QI
Sbjct: 296  T-----LPASFQSNFIHPYLHRNFTAREGARLQSFPDNYIFKGKRTTMSWEKNLSQFQQI 350

Query: 1533 GNAVPPTLAFALGRKLK 1549
            GNAVPP LA ALG  +K
Sbjct: 351  GNAVPPLLAKALGLMIK 367


>gi|359404662|ref|ZP_09197489.1| DNA (cytosine-5-)-methyltransferase [Prevotella stercorea DSM 18206]
 gi|357560090|gb|EHJ41497.1| DNA (cytosine-5-)-methyltransferase [Prevotella stercorea DSM 18206]
          Length = 389

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 191/433 (44%), Gaps = 83/433 (19%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAI-EYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            +D+FAGCGGLS GLQQ+G   T W + E  E     +K NH  S                
Sbjct: 21   VDLFAGCGGLSLGLQQAGF--TPWFVNEIVEQFCNTYKFNHDLS---------------- 62

Query: 1183 KCGDAEDCVSTSEAAELAASLDE--NVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                 +D     + AEL   L+E  ++++++ L      + GGPPCQGFS  NR  Q   
Sbjct: 63   -----DDHYFVGDIAELNLHLEEYKDMLSDITL------VCGGPPCQGFSMANR--QRIL 109

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1300
               +  +   +L F    +P++F++ENV+  +  NK +  +      L   YQ  + +L+
Sbjct: 110  DDPRNALYKQYLIFLKNTRPKFFIMENVKGMM--NKIEEIKQNFEEYLGGEYQYDYALLK 167

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYS----AVRSTA 1356
            A  +GV Q+R+R FI   +                  E K++  + Y++      ++   
Sbjct: 168  AQDYGVPQNRER-FIMIGNR--------------VGVEPKLIFEEIYKHKRKPFVLKDAL 212

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEY-QNDPVSWFQKRIRGNMAV--LTDHISKE 1413
               P            +    +G ++    Y +ND    F K I G+  +  L +H ++ 
Sbjct: 213  EWLPHLVAKKEKGSKGVECAESGFTECDFSYIKND----FYKFINGDKEITKLYNHKNRY 268

Query: 1414 MNELNLIRCQKIPKRPGAD-WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             NE ++   +++P+  GA+  H+            + D++P+      +R++ +K  + +
Sbjct: 269  NNERDIEIYRRLPQ--GANSLHE-----------SIADIMPY-----KRRNDIFKDKYFK 310

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            LD E     +IT         M  HP   R L+ RE AR Q FPD Y   GS    + Q+
Sbjct: 311  LD-ETQICKTITSHMKF-DCNMYIHPWDARGLSPREAARIQTFPDDYVITGSQNMWYAQV 368

Query: 1533 GNAVPPTLAFALG 1545
            GNAVP  LA A+G
Sbjct: 369  GNAVPVKLAKAIG 381


>gi|453067043|ref|ZP_21970333.1| modification methylase [Rhodococcus qingshengii BKS 20-40]
 gi|452767430|gb|EME25670.1| modification methylase [Rhodococcus qingshengii BKS 20-40]
          Length = 431

 Score =  112 bits (281), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 125/487 (25%), Positives = 183/487 (37%), Gaps = 125/487 (25%)

Query: 1082 YSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLAT-LDIFAGCGGLSEGLQQS 1140
            Y++    S  ++R ++   +   D   V ++  A   N   T L  F+GCGG++EG + +
Sbjct: 53   YAAPRKRSSGSTRARRATPVN--DPASVARRAVAGAGNGGPTVLTAFSGCGGMAEGFRMA 110

Query: 1141 GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200
            G S   + IE    A   F  N P +                KC             E  
Sbjct: 111  GFSVEGY-IEVVPEARATFDRNFPGA----------------KC-----------LGEDI 142

Query: 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQP 1260
             ++DE  + +L     +D + GGPPCQGFS   R ++      +  +    L  AD  +P
Sbjct: 143  RAIDEARVKDLLAQVNIDVLAGGPPCQGFSLAGRRDR---DDPRNHLFRNLLELADLVRP 199

Query: 1261 RYFLLENVRNFVSF---NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWA 1317
            +  ++ENVR  +S    + G      L  +   GY      + A  +GV Q R+R FI A
Sbjct: 200  KVVVMENVRLLLSMKDPDGGMVVDRILGEMAACGYDASVNTVNAQDYGVPQFRERVFIVA 259

Query: 1318 ASPHDTLP--EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG-APFRAMTVRDTIGDLP 1374
                  +    +P   H                        NG AP R  T RD   DL 
Sbjct: 260  TRRDSGIGPLRFPPKTH----------------------GVNGVAPLR--TFRDATVDLA 295

Query: 1375 AVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWH 1434
             + +G +      + DP+ W                + E  E  L   + +P+  G   H
Sbjct: 296  PLESGQA-----CETDPLHW----------------AVEHPEHVLRWLRDVPE--GMSAH 332

Query: 1435 DLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGM 1494
            D  D  ++ S+G                   +   + RL W+          +P   VG 
Sbjct: 333  DNEDPAMRPSSG-------------------YNTTYKRLRWD----------EPASTVGT 363

Query: 1495 CF---------HPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALG 1545
             F         HP   R LTVRE AR Q FPD Y F G        IGNAVPP LA  L 
Sbjct: 364  TFGMISASRNVHPKHTRSLTVREAARLQTFPDDYVFEGKWGAVRTMIGNAVPPQLASVLA 423

Query: 1546 RKLKEAV 1552
             ++K+A+
Sbjct: 424  GEIKKAL 430


>gi|161528981|ref|YP_001582807.1| DNA-cytosine methyltransferase [Nitrosopumilus maritimus SCM1]
 gi|160340282|gb|ABX13369.1| DNA-cytosine methyltransferase [Nitrosopumilus maritimus SCM1]
          Length = 360

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 180/438 (41%), Gaps = 88/438 (20%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+FAG GGLS G + +G      A+E+++ A E +  N  E+ +++++   I    
Sbjct: 6    IGVIDLFAGSGGLSLGFKNAGFKVIA-AVEFDKSAAETYSKNFKETKLIVDDIKNIKSNE 64

Query: 1181 MEKCGDAED-CVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            ++K    E  CV                              GGPPCQ +S  N+ N   
Sbjct: 65   LKKITSKERFCVI-----------------------------GGPPCQPYSNANKQNNGK 95

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
             +      I  +       +P+ FL ENV NF +    + F   L    ++GY +   ++
Sbjct: 96   -NHPFANAINHYFRIISELKPQAFLFENVTNFRNLPGWKKF---LNDFKKLGYILSVSVI 151

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            +    G+ Q RKR F+                      E  + L                
Sbjct: 152  DCEKAGLPQKRKRLFVTG---------------FLNGHECNLNLIK-------------I 183

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKT-IMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE-- 1416
            P     + D I  LP++  G S   IM++     S + K++ GN+  L +H   +  E  
Sbjct: 184  PVSCDNLFDVISGLPSIKQGTSGNEIMKHPKKFNSPYGKKLGGNINNLYNHWCTKHGEDV 243

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKG-LFGRLDW 1475
            +N I      +     W  L  +K K               +  K  N   G ++ RL +
Sbjct: 244  INTISEINEGRSLLDSWKTL-SKKTK---------------SRFKNKNSLHGNIYRRLSY 287

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            +   PT +       +  M  HP ++RI++VRE AR Q FPDS++F G+   +++QI +A
Sbjct: 288  QHTTPTIV-----HARRAMLLHPKENRIISVREAARIQSFPDSFRFFGTNNSQYQQIADA 342

Query: 1536 VPPTLAFALGRKLKEAVE 1553
            VPP +A +L  ++++ ++
Sbjct: 343  VPPLVAESLAHEIRKNLK 360


>gi|428211715|ref|YP_007084859.1| DNA-methyltransferase Dcm [Oscillatoria acuminata PCC 6304]
 gi|428000096|gb|AFY80939.1| DNA-methyltransferase Dcm [Oscillatoria acuminata PCC 6304]
          Length = 434

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 190/448 (42%), Gaps = 93/448 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      A+E +       + N P+         V+ R+V+E 
Sbjct: 10   VDLFAGAGGMTLGFEQAGFDVLA-AVEIDPIHCATHEYNFPQ-------WKVLCRSVVEA 61

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             GD     S   + E                  +D + GGPPCQGFS M +         
Sbjct: 62   TGDLIRTQSQIGSRE------------------IDVVCGGPPCQGFSLMGK---RALDDP 100

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            +  ++  F+      QP+YF++ENVR        Q     +    + GYQV   + +L +
Sbjct: 101  RNSLVFHFIRIVTELQPKYFVMENVRGLTIGPHKQLLDEVIDKFHDSGYQVLTPYQVLNS 160

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q+R+R F+       +LP++P P  +   P  K +     Q S + +T      
Sbjct: 161  AHYGVPQNRERLFLIGCREGLSLPDYPTP--ITNPPGCKKL----RQLSDLPATP----- 209

Query: 1362 RAMTVRDTIGDLPAVGNGA---SKTIMEYQNDPVSWFQKRIRG--------------NMA 1404
               TV + I DLP V + +    +  + Y     S +  +++G              + +
Sbjct: 210  ---TVWEAIQDLPRVEDYSELLDRDWLVYTYHLASAYGVQMQGLSESSHNYAYPRECDRS 266

Query: 1405 VLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHN 1464
            +LT +   +  +  + R ++           LP +   +S    +D  P  L NT +   
Sbjct: 267  ILTGNHRTQHTQPAIDRFKET----------LPGKSEPVSRFHKLD--PKGLCNTLRA-- 312

Query: 1465 QWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGS 1524
                  G     G +    T P+P+       HP + R +TVRE AR   +PD ++FH +
Sbjct: 313  ------GTPSNRGAY----TSPRPI-------HPFEPRCITVREAARLHSYPDWFRFHVT 355

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
              H  RQIGN+VPP LA A+  ++ + +
Sbjct: 356  KWHGFRQIGNSVPPLLAKAVAAEIIQVL 383


>gi|254671709|emb|CBA09495.1| modification methylase [Neisseria meningitidis alpha153]
          Length = 351

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 179/449 (39%), Gaps = 112/449 (24%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + + L  +D F G GG+S G+Q +GI      I+YE    E ++ N         N   I
Sbjct: 2    KNSKLKAVDFFCGGGGMSYGMQSAGIQVLA-GIDYEPSCKETYEANI--------NAKFI 52

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
               V E            E  E    L +N  + + +        G  PCQ         
Sbjct: 53   QADVFE---------LQPETLEKELGLKKNDDDLILI--------GCSPCQ--------- 86

Query: 1237 QSTWSKVQCE---------MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
               WS +Q +         ++L F  F +YF P Y ++ENV   +S  K       +  L
Sbjct: 87   --YWSVIQTDKRKSEKSKSLLLEFQRFVEYFNPGYVVVENVPGILSRMKESRLDNFIKLL 144

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             E G+ V FGI     +G+ QSRKR  + A   +    E  EP                 
Sbjct: 145  EEKGFTVHFGIHNTADYGIPQSRKRFTLIA---NRITKEKLEPA---------------- 185

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
            +YS  R          +TVRD +G    + NG  K I  +Q++                T
Sbjct: 186  KYSGKR----------LTVRDVLG----MENGFPKIIAGHQDE----------------T 215

Query: 1408 D--HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            D  H    ++++NL R   IPK  G           +L+   + +L   C      + N 
Sbjct: 216  DFMHSCAGLSDINLKRLALIPKNGGN----------RLAFAHIPELQLECF---IGKDNS 262

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH-GS 1524
            +K  FGRL W+   PT  T    +   G   HP++DR L++RE A  Q FP +Y F  GS
Sbjct: 263  FKDTFGRLWWDKPAPTITTKFFSISN-GRFAHPEEDRALSLREGATLQSFPRNYVFKAGS 321

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 R IGNAVPP  A  +GR + + +E
Sbjct: 322  RDKIARLIGNAVPPMYAEKIGRAIVDNIE 350


>gi|302866239|ref|YP_003834876.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302569098|gb|ADL45300.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC 27029]
          Length = 368

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 175/442 (39%), Gaps = 92/442 (20%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            + L+ +D+FAGCGG++ G    G      ++E++  A   +  N  +      +      
Sbjct: 6    DRLSMIDLFAGCGGMTVGFHNEGFRPIL-SVEWDRAAASTYAANFGKEHTRWED------ 58

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
              +EK  D E                        +P   D I GGPPCQGFS +      
Sbjct: 59   --IEKIKDDE------------------------IP-DADVIIGGPPCQGFSNLG---TK 88

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
            +    + ++   +L F     P+ F++ENV  F   N+ Q         +  GY++  G+
Sbjct: 89   SVEDPRNKLWKQYLRFVVKAHPQVFVIENVERFSRTNEFQLLMEEADHGILQGYKLTAGV 148

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            L A  +GVSQ R R  +   S    +P  PEP H                  A   T   
Sbjct: 149  LLAADYGVSQRRPRTIV-IGSRIGEIP-LPEPTH------------------AKVPTGEL 188

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             P+R  TVRD IG +         T  E  +    +F++ IRG  +    H  ++   ++
Sbjct: 189  RPWR--TVRDAIGWV-----DEHPTTTELPSRETVFFEQGIRGEFSGYDIHFGRQPTTMS 241

Query: 1419 LIRCQKIPKRPGADWHDLPDEKV-------KLSTGQVVDLIPWCLPNTAKRHNQWK---G 1468
            L R   IP  PG    +LPD  +       K  T  V+  + W  P+   R   +K   G
Sbjct: 242  LERYDHIP--PGGGRFNLPDHLLSRCWREKKTGTTDVMGRMRWDAPSLTIRTEFFKPEKG 299

Query: 1469 LFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
             +    WE N P    +                R++T  E +  Q FP  Y++ GS    
Sbjct: 300  QYLHPQWEPNRPDRRVN----------------RVITHYEASLLQDFPKDYKWCGSKTEI 343

Query: 1529 HRQIGNAVPPTLAFALGRKLKE 1550
             +QIGNAVP  LA A+ R LK+
Sbjct: 344  AKQIGNAVPSGLAAAIARHLKK 365


>gi|331090154|ref|ZP_08339042.1| hypothetical protein HMPREF1025_02625 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330402100|gb|EGG81672.1| hypothetical protein HMPREF1025_02625 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 428

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 170/444 (38%), Gaps = 73/444 (16%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLSEG  Q+G       +E  E A +  +        L    N+ L      
Sbjct: 13   IDLFAGAGGLSEGFLQAGFKPVA-HVEMNEFAAKTLE-TRSAYYYLKGTDNLALYKKYVS 70

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPG---------------QVDFINGGPPCQG 1228
               + D       A +  ++    +++  LP                ++D I GGPPCQ 
Sbjct: 71   GKISRDDFMKQIPASITKTIINETMSDETLPAIFKTIDGIMKIRGINKIDVIVGGPPCQA 130

Query: 1229 FSGMNRFNQSTWSKVQCE-----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            +S + R   S       E     +   +  F   +QPR F+ ENV    S N G T++  
Sbjct: 131  YSLVGRAQSSHMEVPMAEDPRNYLYKLYARFLKRYQPRMFVFENVTGIESANGGATWKNI 190

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFI--WAASPHDTLPEWPEPMHVFAAPELKI 1341
               L  +GY++      A  FGV Q+R+R  I  W        P++ E            
Sbjct: 191  QKYLKRVGYEIECREQNAHTFGVLQNRRRMIIVGWLKKSGLKYPDFLE------------ 238

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG 1401
                      +++ A         V D   DLP +  G S              +  IR 
Sbjct: 239  ----------IKTDA--------IVNDLFADLPKLHPGESSDKYAKTKATSYVTESGIRT 280

Query: 1402 NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK 1461
               VLT H  +     N+ R  KI +R    W+   D   +L+           LP+  K
Sbjct: 281  KDDVLTHHNCRP----NIDRDIKIYRRAVELWN---DGHKRLNYND--------LPDELK 325

Query: 1462 RHNQWKGLFGRLD-WEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPD 1517
             H        R    EG+     T    + K G  F HPD  Q+R +TVRE AR Q FPD
Sbjct: 326  THKNRHSFTDRFKVVEGDESCCHTILAHLSKDGHYFIHPDIEQNRSITVREAARIQSFPD 385

Query: 1518 SYQFHGSIQHKHRQIGNAVPPTLA 1541
            SY F G    +  QIGNAVPP +A
Sbjct: 386  SYFFEGPRTSQFVQIGNAVPPMMA 409


>gi|254804174|ref|YP_003082395.1| putative type II DNA modification methylase [Neisseria meningitidis
            alpha14]
 gi|304388624|ref|ZP_07370688.1| possible DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
            ATCC 13091]
 gi|254667716|emb|CBA03597.1| putative type II DNA modification methylase [Neisseria meningitidis
            alpha14]
 gi|304337441|gb|EFM03611.1| possible DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
            ATCC 13091]
          Length = 351

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 180/449 (40%), Gaps = 112/449 (24%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + + L  +D F G GG+S G+Q +GI      I+YE    E ++ N         N   I
Sbjct: 2    KNSKLKAVDFFCGGGGMSYGMQSAGIQVLA-GIDYEPSCKETYEANI--------NAKFI 52

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
               V E            E  E    L +N  + + +        G  PCQ         
Sbjct: 53   QADVFE---------LQPETLEKELGLKKNDDDLILI--------GCSPCQ--------- 86

Query: 1237 QSTWSKVQCE---------MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
               WS +Q +         ++L F  F +YF P Y ++ENV   +S  K       +  L
Sbjct: 87   --YWSVIQTDKRKSEKSKSLLLEFQRFVEYFNPGYVVVENVPGILSRMKESRLDNFIKLL 144

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             E G+ V FGI     +G+ QSRKR  + A   +    E  EP+                
Sbjct: 145  EEKGFTVHFGIHNTADYGIPQSRKRFTLIA---NRITKEKLEPV---------------- 185

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
            +YS  R          +TVRD +G    + NG  K +  +Q++                T
Sbjct: 186  KYSGKR----------LTVRDVLG----MENGFPKIMAGHQDE----------------T 215

Query: 1408 D--HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            D  H    ++++NL R   IPK  G           +L+   + +L   C      + N 
Sbjct: 216  DFMHSCAGLSDINLKRLALIPKNGGN----------RLAFAHIPELQLECF---IGKDNS 262

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH-GS 1524
            +K  FGRL W+   PT  T    +   G   HP++DR L++RE A  Q FP +Y F  GS
Sbjct: 263  FKDTFGRLWWDKPAPTITTKFFSISN-GRFAHPEEDRALSLREGATLQSFPRNYVFKAGS 321

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 R IGNAVPP  A  +GR + + +E
Sbjct: 322  RDKIARLIGNAVPPMYAEKIGRAIVDNIE 350


>gi|194335797|ref|YP_002017591.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308274|gb|ACF42974.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 434

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 187/444 (42%), Gaps = 84/444 (18%)

Query: 1121 LATLDIFAGCGGLSEGLQQ--SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            L  +D+FAG GGLS G         +  WA ++   A E++  N        ++C V   
Sbjct: 35   LRVIDLFAGAGGLSAGFSHFFGHHFTPVWANDFNSCAAESYNAN------FGHHCRV--- 85

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
                  GD  D +             +N    +P   + D + GGPPCQGFS +N+  + 
Sbjct: 86   ------GDIVDIL-------------DNPTTIIP---KADVVIGGPPCQGFSLLNKNKEG 123

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298
               K   ++ + F+          F++ENV   +S       R   A    MG+++    
Sbjct: 124  DARK---QLWIPFMDVVRLSGADVFVMENVPELLS---SLECREIYAMANAMGFKLVSAK 177

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST--- 1355
            L A  +GV Q R RAFI          ++ +P  VF  P+        Y+   V S+   
Sbjct: 178  LCAADYGVPQIRWRAFIVGC-------KFADPQAVF-PPKKTHFPHKGYRQRFVESSIPY 229

Query: 1356 -ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
             A+  PFR  TV+D IGDLPA       TI+  +  P              L  H  +  
Sbjct: 230  IADAQPFR--TVKDAIGDLPA----PQGTIVRPEAPP--------------LDLHFGRTP 269

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLD 1474
               +L R + IP+  G +  DL  +++        +L P C     ++ +    LFGRL 
Sbjct: 270  TAKSLERYRSIPEE-GMNRVDL--KRI------APELTPDCW---MRKKSGGTDLFGRLW 317

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
            W     T  T+     K G   HP QDR +T RE AR Q FPD ++F GS     +QIGN
Sbjct: 318  WNKPSVTIRTEFYKPEK-GRYLHPVQDRPITHREAARFQSFPDEFKFTGSKVEIAKQIGN 376

Query: 1535 AVPPTLAFALGRKLKEAVESKRST 1558
            AVP  LA  +   +   + SK+ T
Sbjct: 377  AVPCQLAARVADCVYALLLSKQET 400


>gi|354567856|ref|ZP_08987023.1| DNA-cytosine methyltransferase [Fischerella sp. JSC-11]
 gi|353541530|gb|EHC10997.1| DNA-cytosine methyltransferase [Fischerella sp. JSC-11]
          Length = 528

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 179/457 (39%), Gaps = 120/457 (26%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            AS +  L  L  F+GC GL  GL++ GI     A E +  A +  + N P+  ++     
Sbjct: 113  ASSKPTLKALSFFSGCMGLDLGLEREGIE-VLLACEVDTAARKTIETNKPDIALI----- 166

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
                      GD  D  S +E  E A          L L   +D I GGPPCQ FS   +
Sbjct: 167  ----------GDIRD-YSANEIRERAG---------LGLQEDIDVIVGGPPCQAFSSAGK 206

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF-------------------- 1274
              +  ++  +  + L F+      +P++ ++ENVR  +S                     
Sbjct: 207  --RQGFNDERGNVFLTFIDLITELRPKFAVIENVRGLLSAPLKHRPHEMRGVNYPPLSQE 264

Query: 1275 -NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHV 1333
              +G         L + GY V F +  A  FG  Q R+R  I      + LP +  P H 
Sbjct: 265  EQRGGALLYITRRLKQAGYSVSFNLYNAANFGSPQQRERIIITCCRDGEKLP-YLTPTH- 322

Query: 1334 FAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVS 1393
                      S+   Y        G P +  T+++ +  LP  G+             V 
Sbjct: 323  ----------SEKGLY--------GLP-KWRTLKEALEGLPKDGHNF-----------VK 352

Query: 1394 WFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIP 1453
            + +KR++    +                      +PG  W DLP E  K + G       
Sbjct: 353  FPEKRLKYYRLL----------------------KPGQYWRDLPVELHKEALG------- 383

Query: 1454 WCLPNTAKRH--NQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECAR 1511
                  A  H      G + RL W+   PT +T P  M    +  HP++DR L+++E  R
Sbjct: 384  ------ASYHAGGGKTGFYRRLAWDKPSPTLVTHPA-MPATDLA-HPEEDRPLSIQEYKR 435

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
             Q FPD +   GS+  ++RQ+GNAVP +L  A+GR L
Sbjct: 436  IQEFPDDWIIEGSLLDQYRQVGNAVPCSLGRAIGRML 472


>gi|421907891|ref|ZP_16337756.1| modification methylase [Neisseria meningitidis alpha704]
 gi|393290977|emb|CCI73764.1| modification methylase [Neisseria meningitidis alpha704]
          Length = 351

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 179/449 (39%), Gaps = 112/449 (24%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + + L  +D F G GG+S G+Q +GI      I+YE    E ++ N         N   I
Sbjct: 2    KNSKLKAVDFFCGGGGMSYGMQSAGIQVLA-GIDYEPSCKETYEANI--------NAKFI 52

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
               V E            E  E    L +N  + + +        G  PCQ         
Sbjct: 53   QADVFE---------LQPETLEKELGLKKNDDDLILI--------GCSPCQ--------- 86

Query: 1237 QSTWSKVQCE---------MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASL 1287
               WS +Q +         ++L F  F +YF P Y ++ENV   +S  K       +  L
Sbjct: 87   --YWSVIQTDKRKSEKSKSLLLEFQRFVEYFNPGYVVVENVPGILSRMKESGLDNFIKLL 144

Query: 1288 LEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNY 1347
             E G+ V FGI     +G+ QSRKR  + A   +    E  EP                 
Sbjct: 145  EEKGFTVHFGIHNTADYGIPQSRKRFTLIA---NRITEEKLEPA---------------- 185

Query: 1348 QYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLT 1407
            +YS  R          +TVRD +G    + NG  K I  +Q++                T
Sbjct: 186  KYSGKR----------LTVRDVLG----MENGFPKIIAGHQDE----------------T 215

Query: 1408 D--HISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQ 1465
            D  H    ++++NL R   IPK  G           +L+   + +L   C      + N 
Sbjct: 216  DFMHSCAGLSDINLKRLALIPKNGGN----------RLAFAHIPELQLECF---IGKDNS 262

Query: 1466 WKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH-GS 1524
            +K  FGRL W+   PT  T    +   G   HP++DR L++RE A  Q FP +Y F  GS
Sbjct: 263  FKDTFGRLWWDKPAPTITTKFFSISN-GRFAHPEEDRALSLREGATLQSFPRNYVFKAGS 321

Query: 1525 IQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 R IGNAVPP  A  +GR + + +E
Sbjct: 322  RDKIARLIGNAVPPMYAEKIGRAIVDNIE 350


>gi|229490017|ref|ZP_04383870.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
 gi|229323118|gb|EEN88886.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
          Length = 431

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 166/445 (37%), Gaps = 122/445 (27%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             L  F+GCGG++EG + +G S   + IE    A   F  N P +  L  +   I      
Sbjct: 93   VLTAFSGCGGMAEGFRMAGFSVEGY-IEVVPEARATFDRNFPGARCLGEDIRAI------ 145

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                                 DE  + +L     +D + GGPPCQGFS   R ++   + 
Sbjct: 146  ---------------------DEARVKDLLAQVDIDVLAGGPPCQGFSLAGRRDR---AD 181

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLASLLEMGYQVRFGIL 1299
             +  +    L  A+  +P+  ++ENVR  +S    + G      L  +   GY      +
Sbjct: 182  PRNHLFRNLLELAELVKPKVLVMENVRLLLSMKDPDGGMVVDRILGEMAACGYDASVNTV 241

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLP--EWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
             A  +GV Q R+R FI A      +    +P   H                        N
Sbjct: 242  NAQDYGVPQFRERVFIVATRRDSGIGPLRFPPKTH----------------------GVN 279

Query: 1358 G-APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            G AP R  T RD   DL  + +G +      + DP+ W                + E  E
Sbjct: 280  GVAPLR--TFRDATVDLAPLESGQA-----CETDPLHW----------------AVEHPE 316

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
              L   + +P+  G   HD  D  ++ S+G                   +   + RL W+
Sbjct: 317  HVLRWLRDVPE--GMSAHDNEDPAMRPSSG-------------------YNTTYKRLRWD 355

Query: 1477 GNFPTSITDPQPMGKVGMCF---------HPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
                      +P   VG  F         HP   R LTVRE AR Q FPD Y F G    
Sbjct: 356  ----------EPASTVGTTFGMISASRNVHPKHTRSLTVREAARLQTFPDDYVFEGKWGA 405

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAV 1552
                IGNAVPP LA AL  ++K+A+
Sbjct: 406  VRTMIGNAVPPQLASALAGEIKKAL 430


>gi|418028739|ref|ZP_12667291.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus delbrueckii subsp.
            bulgaricus CNCM I-1632]
 gi|354691422|gb|EHE91350.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus delbrueckii subsp.
            bulgaricus CNCM I-1632]
          Length = 498

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 186/433 (42%), Gaps = 70/433 (16%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F G GGLS GL QSG     +A + E+ A + +  NHPE    I    + +  +   
Sbjct: 123  VDLFCGSGGLSLGLAQSGFRVI-FANDIEKAALQTYSFNHPE----IPGAQITMGGIENI 177

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                +D V+                       +VD + GGPPCQGFS  NR  Q      
Sbjct: 178  SSHIKDYVNE----------------------EVDMVAGGPPCQGFSEANR--QRLIDDP 213

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA 1303
            + ++   ++      QP+ F++ENV+  +    GQ       S     Y + + IL A  
Sbjct: 214  RNKLYKYYVESVTALQPKVFVMENVKGMLKV-AGQVLEDFNNSASH--YDIYYKILNARN 270

Query: 1304 FGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVR----STANGA 1359
            FGV Q+R+R  I+     D    +       +A E+   + +       R    + A   
Sbjct: 271  FGVPQNRER-LIYIGIRKDIADRYKT-----SAEEVMNQILNKSGKQGDRPLSEALAGLR 324

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPV--SWFQKRIR--GNMAVLTDHISKEMN 1415
            P  A  V++     P + N     +++ + +PV  S + + I   G  +++ +H S+  N
Sbjct: 325  PLEASRVKNN----PQLENEKIGYLID-KEEPVYSSKYLQLINPDGQESLIFNHKSRYNN 379

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            + ++    ++   PG D  D P         ++ D++P+       R + +K  + +L  
Sbjct: 380  DRDIEIYGRM--EPG-DRSDSP---------KIADIMPYT-----SRKDIFKDKYFKLI- 421

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
                P             M  HP Q R LT RE AR Q +PD + F GS    ++QIGN+
Sbjct: 422  -PGVPCKTITAHMKFDCNMYIHPSQARGLTPREAARIQSYPDDFFFQGSFTKTYQQIGNS 480

Query: 1536 VPPTLAFALGRKL 1548
            VPP LA A+G++L
Sbjct: 481  VPPLLARAIGQEL 493


>gi|158339669|ref|YP_001520676.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina MBIC11017]
 gi|158309910|gb|ABW31526.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina MBIC11017]
          Length = 382

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 186/437 (42%), Gaps = 75/437 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            LDIF G GG+S G Q++G       I+    A +    N P+       C + L      
Sbjct: 2    LDIFCGAGGMSLGFQKAG-CKILGGIDNNPHAVKTHHQNFPK-------CKLKL------ 47

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQSTWS 1241
              DA D        +L              P +VD + GGPPCQ FS  G+ +       
Sbjct: 48   --DATDIRDIENLEDLGID-----------PKEVDILIGGPPCQVFSRVGIGKMKNHLKR 94

Query: 1242 KVQCE----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
             ++ +    +   ++ F  Y++P +F++ENV N    NK       +  L   GY+V + 
Sbjct: 95   NIEQDPRNFLYKEYIRFLRYYKPLFFIIENVDNLA--NKKDILETIIKELEACGYRVEYN 152

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            +L+A  FGV Q R R FI  +     L    +P  +F   + KI L+      A+     
Sbjct: 153  VLDASDFGVPQRRLRIFIIGSR----LDLGWKP--IFPKSKTKIPLTVG---EAISDLLE 203

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRG-NMAVLTDHISKEMNE 1416
              P  AM ++     L + G       + Y++ P S +Q+ +R  N  ++ +HI +  N 
Sbjct: 204  LQP-TAMPLK-----LKSSGPKQKDCELPYRSAPESGYQRIMRRYNGDLVRNHICRAHNY 257

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
             +L     +  + G  + DLP E ++                   R + +K  + RL W+
Sbjct: 258  EDLKIFDML--KQGQKYGDLPQEVMRY------------------RVDIFKDKYKRLIWD 297

Query: 1477 GNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
                 S T    M K  + + HP Q R ++VRE  R Q FPD++ F+  +      +GN+
Sbjct: 298  D---LSWTLTAHMRKDCLAYIHPTQIRSISVREAGRIQSFPDNFIFYAPMTRMFELVGNS 354

Query: 1536 VPPTLAFALGRKLKEAV 1552
            VPP LA ++ + + + +
Sbjct: 355  VPPLLAESVAKPIVKKI 371


>gi|225862883|ref|YP_002748261.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225787129|gb|ACO27346.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 367

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 175/429 (40%), Gaps = 96/429 (22%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+F+G GG S G + +G   T +AI++ + A   + LN  + + +  +   +    + K
Sbjct: 7    MDLFSGVGGFSLGFEMAGYE-TIFAIDFWKDAIATYNLNRKKDIAVHMDIANLTNEHLRK 65

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFS--GMNRFNQSTWS 1241
              +  D                           ++ I GGPPCQGFS  G    N     
Sbjct: 66   LKEEHD---------------------------IEGIIGGPPCQGFSTVGTRDINDE--- 95

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF-GILE 1300
              +  + L +        P++F++ENV+  ++ N G      L    E+GY++    +L 
Sbjct: 96   --RNHLYLEYYRVVKEIMPKFFVIENVKGLLTLNNGMFKEDILNRFGELGYKISDPQVLN 153

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R+R F       D   E+PE             L +N              
Sbjct: 154  AADYGVPQNRQRVFFVGVL--DGHFEYPE-------------LDEN-------------- 184

Query: 1361 FRAMTVRDTIGDLPAVGN-GASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
               ++  + + DLP +        +  Y  DP + +Q  +R N   + +H      +  +
Sbjct: 185  --KVSTLEALSDLPVLDKIEQYNEVYNYSCDPQNSYQSIMRKNSNEILNHNQTNHTQQTI 242

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
                 +P   G    DLP E              W      +++N+    F R++ +   
Sbjct: 243  DIISMVPD--GGSIKDLPPEY-------------W----QVRKYNK---AFQRMNSQ--L 278

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
            P+   D          FH  ++R+ +VRECAR Q FPD + F G+   +++Q+GNAVPP 
Sbjct: 279  PSHTIDTGHRN----YFHYSENRVPSVRECARIQSFPDDFVFIGTKSSQYKQVGNAVPPL 334

Query: 1540 LAFALGRKL 1548
            LA+ + +KL
Sbjct: 335  LAYKIAQKL 343


>gi|2894386|emb|CAA74996.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase (C1)
            [Bacillus pumilus]
          Length = 398

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 178/447 (39%), Gaps = 99/447 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            ++ +D+FAG GG+S G + +G      A+E ++ A + ++ N         N NVI   +
Sbjct: 8    VSPIDLFAGAGGMSLGFENAGFE-IPLAVEIDDWAVDTYRKNR-------ENSNVIKNDI 59

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
            +E        +  +   + +                +D + GGPPCQGFS ++  N+   
Sbjct: 60   LE--------IDNAFFKQFSG---------------IDAVIGGPPCQGFS-ISASNRRNP 95

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLASLLEMGYQVRFG 1297
               +  +   FL      +PR   +ENV+  V F   N        +  L E+GY ++  
Sbjct: 96   DDPRNYLYRQFLRVIKLVKPRIVFMENVKEIVKFVLPNGKLLLDEIIFCLEELGYSIKPF 155

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
            I+ A  FG+ Q R R F+ A     +L   P+ +      E   +L  N +Y  V S   
Sbjct: 156  IINAADFGIPQERIRFFMVA-----SLGPVPDLLQEATYSETVDLLRPN-KYRDVYSA-- 207

Query: 1358 GAPFRAMTVRDTIGDLPAV--GNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                        I DLPAV           EY N PV+ +Q+ +R   A + +HI     
Sbjct: 208  ------------ISDLPAVYPRQHEEGDTFEYDNQPVNNYQRLMRKGSANIYNHIPMRHT 255

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW 1475
            +  +                   EK K+   Q +D +P  L   ++       +  +   
Sbjct: 256  DRTI-------------------EKFKMIRTQGIDSLPENL--RSRTRGDSSKISNKTYS 294

Query: 1476 EGNFPTSITDPQPMGKVGM---CFHPDQDRILTVRECARSQGFPDSYQFHGS-------- 1524
            + +   + T P P           HP QDR LTVRE AR Q FPD+Y F+G         
Sbjct: 295  QNHRRINPTKPSPTITASFYSSFIHPYQDRNLTVREAARIQSFPDNYIFYGKRTTLSKKL 354

Query: 1525 ------IQHKH----RQIGNAVPPTLA 1541
                   +  H     Q+GNAVPP LA
Sbjct: 355  LEKKGIFEDVHLDQFNQVGNAVPPLLA 381


>gi|358456224|ref|ZP_09166448.1| DNA-cytosine methyltransferase [Frankia sp. CN3]
 gi|357080400|gb|EHI89835.1| DNA-cytosine methyltransferase [Frankia sp. CN3]
          Length = 668

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 186/466 (39%), Gaps = 113/466 (24%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
            A   + L   D+F+G GGLS GL Q+G+      ++++  A E  + +H   L L     
Sbjct: 55   AEDPDQLLVADLFSGAGGLSLGLDQAGLRVV-LGVDHDSEATETHR-HHFSGLTLDE--- 109

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
                       D  D     E AEL  SL            ++D + GGPPCQ FS   R
Sbjct: 110  -----------DLSDPAKVDEIAELIRSL------------RLDVVVGGPPCQPFSRAGR 146

Query: 1235 FNQSTWSKV--------QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
                  +++        + ++  +FL+   + +P   L+ENV +     +   FR  + +
Sbjct: 147  SKIRHRARLGLAEAHDRRRDLWESFLAIVRHAKPGCVLMENVPDMALDREMFIFRTIVHT 206

Query: 1287 LLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP----EPMHVFAAPELKIM 1342
            L  +GY V+  +++   +GV Q R+R  I A     T   WP    E +H++ A      
Sbjct: 207  LEGLGYSVQARLVDTSEYGVPQFRQRLIIAAMHGGATF-SWPKEATERVHLWNA------ 259

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAV------GNGASKTIMEYQNDPVSWFQ 1396
                                       IGDLP V        G +   M    +P + FQ
Sbjct: 260  ---------------------------IGDLPEVEGGWRPPGGPAGWSMYDPTEPQNSFQ 292

Query: 1397 KRI-----RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDL 1451
            + +     RG    + DHI++ +                      PD++          L
Sbjct: 293  RAMRAKVPRGERDRVYDHITRPVR---------------------PDDRAAFELMDETTL 331

Query: 1452 IPWCLPNTAKRHNQ--WKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRE 1508
                LP   KR+    +   + RL  E  F  +IT    + K G  + HP Q R LT+RE
Sbjct: 332  YS-DLPAEMKRYRDDIFDDKYKRLS-ENTFSRTIT--AHIAKDGYWYIHPRQSRTLTIRE 387

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
             AR Q FPD  +F G      RQIGNAVPP L   LGR L +++++
Sbjct: 388  AARLQTFPDHVRFAGPPSAAFRQIGNAVPPRLGEHLGRALVQSLDA 433


>gi|300866085|ref|ZP_07110814.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300335911|emb|CBN55972.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 436

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 180/441 (40%), Gaps = 78/441 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D FAG GG++ G +Q+G      ++E +         N P         +V  +++++ 
Sbjct: 13   IDFFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHNFNFP-------FWSVFCQSIIDI 64

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             G        +E  + +A  D           ++D + GGPPCQGFS + +    +    
Sbjct: 65   TG--------AEIRQKSAIGDR----------EIDVVFGGPPCQGFSLIGK---RSLEDP 103

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            +  ++  F+       P+YF++ENV      +        +    E GYQ+   + IL A
Sbjct: 104  RNSLVFEFIRLVIELNPKYFVIENVGGMAIGHHKNFIAEIINEFRENGYQIEENYQILNA 163

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R+R F+       TLP +P+                 + + A R T++    
Sbjct: 164  AQYGVPQKRERLFLLGCRQDLTLPTYPQA----------------FTHPASRKTSHSELP 207

Query: 1362 RAMTVRDTIGDLPAVGNGA---SKTIMEYQND---PVSWFQKRIRGNMAVLTDHISKEMN 1415
             +  V D + DLP V N      K  +E   D     S + K +RG  +V  D+  K + 
Sbjct: 208  DSPNVWDALRDLPQVENYIELLEKDWVEISEDDYGKASDYGKILRGISSVDNDYSYKRIY 267

Query: 1416 ELNLIRCQKIPKRPGADWHDL----PDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
               ++      K             P +   +S    +D    C  NT +         G
Sbjct: 268  NKRVLTSSLRTKHNAESKERFAATKPGKVEPISRFHKLDFDGVC--NTLRA--------G 317

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
                 G F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ
Sbjct: 318  TASNRGAF----TSPRPI-------HPYTPRCITVREAARLHSYPDWFRFHVTKWHGFRQ 366

Query: 1532 IGNAVPPTLAFALGRKLKEAV 1552
            +GN+VPP LA A+  K+ EA+
Sbjct: 367  VGNSVPPLLAKAVASKIIEAL 387


>gi|399088671|ref|ZP_10753609.1| DNA-methyltransferase Dcm [Caulobacter sp. AP07]
 gi|398030459|gb|EJL23871.1| DNA-methyltransferase Dcm [Caulobacter sp. AP07]
          Length = 498

 Score =  112 bits (279), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 118/496 (23%), Positives = 207/496 (41%), Gaps = 100/496 (20%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN---HPESLMLINNCNVILRAV 1180
            LD+F+G GG+S G Q++G      A+E +  A     LN   H ++ +L  +        
Sbjct: 30   LDLFSGAGGISLGFQKAGFR-IDGALEIDPQAALTHALNFHGHLDTDLLAAHA------- 81

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN---- 1236
                  A   ++  E  +L   L    + N      VD + GGPPCQ ++ + R      
Sbjct: 82   ------APRDMTKVEPRDLVEQLQLGSLEN-----SVDVLVGGPPCQAYARVGRAKLREV 130

Query: 1237 ----QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY 1292
                Q+     +  + L +L++   F+P   L+ENV + + +         + +L  +GY
Sbjct: 131  ADHPQAFKVDPRGNLYLRYLTYVRAFRPLALLIENVPDILHYAHHNVAEEIVEALEALGY 190

Query: 1293 QVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSA 1351
               + ++ A   GV Q R R FI A      LP  +P+  H F  P           Y+ 
Sbjct: 191  VANYSLINAAFHGVPQMRDRVFIVAYRKELGLPIRFPKATHHFDLP---------VGYAG 241

Query: 1352 VRSTA-------------------NGAPFRAMTVRDTIGDLPAV-GNGASKTIMEY---- 1387
             R+ A                      PF  +T  D + DLP + G+   +    +    
Sbjct: 242  TRAVALRYVNREGSAGYVAPDLGDESLPF-PVTATDALSDLPPILGSSVRRGPRRFDQFE 300

Query: 1388 ---QNDPVSWFQKRIRG-----NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE 1439
                +D +  + + +R      +   ++DH+ + +   +L+  +    RPGA++ +    
Sbjct: 301  SYRSSDSLGGYAQTMRQWPGFESAEGVSDHVIRALPRDHLVFAEM---RPGAEYPEAHAT 357

Query: 1440 KVKLS------------TGQVVDLIPWCLP--NTAKRHNQWKGLFGRLDWEGNFPTSITD 1485
             +K++            T    +++   +P  +T K  N+W  L        +FP   T 
Sbjct: 358  GMKIARRRAEAEGVAEGTTAFDEIVRQIVPPYDTTKFPNRWWKL------RPDFPVR-TL 410

Query: 1486 PQPMGK---VGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
               +GK     + +  DQ R ++VRE AR Q FPD ++F G++    +QIGNAVPP +A+
Sbjct: 411  MAHLGKDTYSHIHYDADQARTISVREAARLQSFPDGFKFSGTMNPAFKQIGNAVPPLMAY 470

Query: 1543 ALGRKLKEAVESKRST 1558
            AL   + E +++   T
Sbjct: 471  ALATVIHEDLKAAAGT 486


>gi|399912408|ref|ZP_10780722.1| DNA-cytosine methyltransferase [Halomonas sp. KM-1]
          Length = 369

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 190/444 (42%), Gaps = 84/444 (18%)

Query: 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVI 1176
            + N    +D+FAGCGG   G + +G   T  AI+ EE    ++++N P +  ++      
Sbjct: 2    KTNKPTVIDLFAGCGGFGLGAELAGFE-TSVAIDIEEKLQSSYRVNFPSTTTVL------ 54

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
                             S+ +++ A   + ++  +    +VD + GGPPCQGFS + R N
Sbjct: 55   -----------------SDLSDMGAYAWDYLLGKI----KVDGVIGGPPCQGFSRIGRRN 93

Query: 1237 QSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRF 1296
             +   +   ++I  F    +  +P++F++ENV   +  N  ++   +L  +LE  Y++  
Sbjct: 94   INDPRR---QLIHHFFRTINIIRPKFFVMENVLGLLDNNNYESVENSLG-ILEGFYKI-I 148

Query: 1297 G--ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
            G  +++A  FG + SRKR  +    P++            +  +   +L ++Y+      
Sbjct: 149  GPLVVDAKDFGAATSRKRVILVGYDPNE-----------MSEIDDGDLLGESYE------ 191

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414
                     + V+  I DLP+      KT      +   W + R          H S   
Sbjct: 192  --------KVNVKHAISDLPSPIKQGKKT------NSYGWGKYR--------ECHTSPYA 229

Query: 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTG---QVVDLIPWCLPNTAKRHNQWKGLFG 1471
            N +  +  +++      D            T    QVV      LP   ++ +++     
Sbjct: 230  NAMKSLPPERLGSPLAIDMLKQGYVSGLFETSHSQQVVKRFNMTLPGETEKISRYP---- 285

Query: 1472 RLDWEGNFPT---SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            RL W+G  PT        +   +     HP + R++TVRE AR QGFPD + FH +  H 
Sbjct: 286  RLSWDGLCPTLRAGTGSDRGNFQAMRPIHPFEPRVITVREAARLQGFPDWFLFHPTKHHS 345

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAV 1552
             R IGN+V P L+ A+  KLKE +
Sbjct: 346  FRMIGNSVSPVLSKAILGKLKEKL 369


>gi|357390490|ref|YP_004905331.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
 gi|311896967|dbj|BAJ29375.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 676

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 186/441 (42%), Gaps = 76/441 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             LD+F+G GGLS GL ++G +    A+++  PA E    N P   + ++           
Sbjct: 56   ALDLFSGAGGLSLGLTRAGWTLAA-AVDHSGPALETHAANFPGMSLDVD----------- 103

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G+           + AA             G++D + GGPPCQ FS   R       +
Sbjct: 104  -LGEPAALEELLTLLQPAA-------------GRIDLVAGGPPCQPFSRAGRSKIRDLVE 149

Query: 1243 --------VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV 1294
                    ++ E+  ++L   +  +PR  L+ENV +    +  +  R     L   GY  
Sbjct: 150  NHGRNPVDLRKELWRSYLRIIEVVKPRAVLMENVPDMGLSDDFRVVRFIEQRLENAGYAT 209

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP--EPMHVF-AAPELKIMLSDNYQYSA 1351
            +  +++A  +GV Q RKR  + A +  +     P  EP+ +  A  +L  +L    +Y  
Sbjct: 210  QVRLVDAWRYGVPQHRKRLILLARNDVEQFDWEPDQEPVTLREAIADLPPLLVATEEY-- 267

Query: 1352 VRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHIS 1411
                A G P+   T R  +   P V + A    +    + V   Q     +  V+ DH++
Sbjct: 268  ----AGGRPYILPTERVGVRRTPYVPSPAPSAFVAKMREGVEQDQ-----SEEVVWDHMT 318

Query: 1412 KEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRH--NQWKGL 1469
            + + +               DW        ++ +    D +   +  + +R+  + +   
Sbjct: 319  RRVRK--------------DDW--------EIFSTMESDTLYSAVDESLRRYRADSFTDK 356

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCF-HPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            + +LDW      SIT    + K G  + HPDQ+R LT+RE AR Q FPD ++F G+    
Sbjct: 357  YKKLDW-AQRSRSIT--AHIAKDGYWYIHPDQNRTLTIREAARIQTFPDWFRFAGTRSDA 413

Query: 1529 HRQIGNAVPPTLAFALGRKLK 1549
             RQIGNAVPP L  A  R L+
Sbjct: 414  FRQIGNAVPPLLGEAAARVLR 434


>gi|427738987|ref|YP_007058531.1| DNA-methyltransferase Dcm [Rivularia sp. PCC 7116]
 gi|427374028|gb|AFY57984.1| DNA-methyltransferase Dcm [Rivularia sp. PCC 7116]
          Length = 429

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 182/446 (40%), Gaps = 84/446 (18%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      A+E +       + N P    L              
Sbjct: 6    VDLFAGAGGMTLGFEQAGFDVLA-AVELDPIHCAVHEFNFPFWSTL-------------- 50

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            C   E  +S  +   L+   ++          ++D + GG PCQGFS M +         
Sbjct: 51   CARVEK-ISGKKIRRLSTIRNK----------EIDVVFGGSPCQGFSMMGK---RALDDP 96

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            +  ++  FL      QP+YF+ ENV               +A   + GY+V   + +L A
Sbjct: 97   RNSLVFHFLRLILELQPKYFVFENVPGLTVGEHRIFLSTVIAEFEKNGYRVEANYQVLNA 156

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q R R FI+       LP++P+P+    AP+    +S   +Y          P 
Sbjct: 157  ANYGVPQDRARLFIFGCRQGLNLPKYPQPL---TAPK----ISKKSKYIVNNPDLPATP- 208

Query: 1362 RAMTVRDTIGDLPAVGNGASKT----IMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
               TV D I DLP V N +       ++    +P S +  ++RG  ++  ++  + + + 
Sbjct: 209  ---TVWDAICDLPEVENYSELIERDWVIAKYGEP-SNYSSQLRGISSIEKNYSYERLFDN 264

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
              + C    K      H+L          Q +       P   +  +     F +L   G
Sbjct: 265  FFLTCSTRTK------HNL----------QSISRFKQTEPGKTEPVSH----FHKLAANG 304

Query: 1478 NFPT----------SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
               T          + T P+P+       HP   R +TVRE AR   +PD ++FH +  H
Sbjct: 305  ISKTLRAGTPRNRGAFTSPRPI-------HPVTPRCITVREAARLHSYPDWFRFHLTKWH 357

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAVE 1553
              RQIGN+VPP LA A+  ++  A+E
Sbjct: 358  GFRQIGNSVPPLLAKAIATEIIRALE 383


>gi|268589649|ref|ZP_06123870.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
 gi|291314961|gb|EFE55414.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
          Length = 424

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 181/442 (40%), Gaps = 117/442 (26%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
               L++FAG GG++ GL+++G+S+     E ++ A    +LN P       + NV+    
Sbjct: 75   FTVLELFAGAGGMALGLEKAGLSAVMLN-EIDKHACNTLRLNRP-------DWNVV---- 122

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD              A +D +        G+VD + GG PCQ FS   +  +  +
Sbjct: 123  ---EGDV-------------AGIDFSQYK-----GKVDVLAGGFPCQAFSYAGK--KMGF 159

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQ-VRFGIL 1299
               +  +   F       QP+  L ENVR  ++ + G+T +  + ++ E+GY  V   +L
Sbjct: 160  EDTRGTLFFEFARAVQEVQPKILLAENVRGLLNHDDGKTLQTIVNAIDEIGYSLVDPKVL 219

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLP----EWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            +A  + V Q R+R  I  A   D +     +WP P H                       
Sbjct: 220  KAIFYQVPQKRER-LILVAIRKDLVNSIKYDWPSPYH----------------------- 255

Query: 1356 ANGAPFRAMTVRDTI--GDLPAVGNGASKTIMEYQND-PVSWFQKRIRGNMAVLTDHISK 1412
                  + MT+RD +  G+L             +  D P S  QK  +    +L+     
Sbjct: 256  ------KVMTMRDALKAGEL-------------FDTDVPKSDGQKYPKRKQEILS----- 291

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
                        +P+  G  W DLP+E  K    +   L                G+  R
Sbjct: 292  -----------LVPQ--GGYWRDLPEELQKEYMQKSYYL-----------GGGKTGMARR 327

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQI 1532
            L W+   P+      P  K     HPD+ R L +RE AR Q FPD ++F G +  K++QI
Sbjct: 328  LSWDE--PSLTLTCSPAQKQTERCHPDETRPLAIREYARIQTFPDDWEFSGPMTAKYKQI 385

Query: 1533 GNAVPPTLAFALGRKLKEAVES 1554
            GNAVP  L++A+GR L  A+ S
Sbjct: 386  GNAVPVNLSYAIGRSLVRALNS 407


>gi|422822980|ref|ZP_16871168.1| modification methylase HgiDII [Streptococcus sanguinis SK405]
 gi|422826940|ref|ZP_16875119.1| modification methylase HgiDII [Streptococcus sanguinis SK678]
 gi|422854922|ref|ZP_16901580.1| modification methylase HgiDII [Streptococcus sanguinis SK1]
 gi|324993630|gb|EGC25549.1| modification methylase HgiDII [Streptococcus sanguinis SK405]
 gi|324995058|gb|EGC26971.1| modification methylase HgiDII [Streptococcus sanguinis SK678]
 gi|327462899|gb|EGF09220.1| modification methylase HgiDII [Streptococcus sanguinis SK1]
          Length = 352

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 185/448 (41%), Gaps = 118/448 (26%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D+F G GGL+ G+QQ+GI+      + ++ +  A++ N        N+   IL+ +
Sbjct: 3    INAIDLFCGVGGLTYGVQQAGINVVA-GYDIDDKSKFAYEYN--------NDAKFILKDI 53

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMN---RFNQ 1237
             E                     D+ ++   P    +  + G  PCQ FS  +   + N+
Sbjct: 54   KE-------------------IEDDEILALYPKDTDIKILIGCAPCQPFSSYSHKYQNNE 94

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM-GYQVRF 1296
            +T  K+  +++  F    +  QP    +ENV         Q FR    +LLE  GY+V F
Sbjct: 95   NTLKKI--DLLDYFGKQIELVQPDIVSMENVPQMEKREVFQRFR----TLLEKNGYKVTF 148

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             ++ A  +GV Q RKR  + A+   D              PE     S++Y         
Sbjct: 149  KVVYAPEYGVPQMRKRLLLLASKLGDI---------SLLEPEFN---SESYP-------- 188

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
                    T+RD I +LP +  G +     Y  DP+                H S+ M+ 
Sbjct: 189  --------TLRDAIENLPKIKAGET-----YAKDPL----------------HRSRNMST 219

Query: 1417 LNLIRCQKIPKRPGADWHD----LPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
            LNL R Q+   +PG  W D    L  E  K  +GQ                  +  ++GR
Sbjct: 220  LNLKRIQQ--SKPGGTWRDWDEDLLLEAYKKESGQ-----------------SFGSVYGR 260

Query: 1473 LDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF-------HGSI 1525
            L+W+    T  T    +G  G   HP+QDR L++RE A  Q FP +YQF       +  I
Sbjct: 261  LEWDKPANTITTQFPGIGN-GRFGHPEQDRALSLREGALLQTFPSNYQFVSPKQGGNYPI 319

Query: 1526 QHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
                 QIGNAVPP L   +GR + + +E
Sbjct: 320  GQVALQIGNAVPPKLGEIIGRSIIKHLE 347


>gi|448434340|ref|ZP_21586150.1| DNA-cytosine methyltransferase [Halorubrum tebenquichense DSM 14210]
 gi|445685256|gb|ELZ37611.1| DNA-cytosine methyltransferase [Halorubrum tebenquichense DSM 14210]
          Length = 392

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 175/454 (38%), Gaps = 118/454 (25%)

Query: 1114 GASQENHLATLDIFAGCGGLSEGLQQSG----ISSTKWAIEYEEPAGEAFKLNHPESLML 1169
             AS +        F+GCGGL  G +++G    + S +W     EPA E ++ N       
Sbjct: 15   AASDDAAPVVAGFFSGCGGLDLGFERAGFDVALGSDQW-----EPAAETYRRN------- 62

Query: 1170 INNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGF 1229
                           G  E+ V   +AA +  S++    +    PG VD + GGPPCQGF
Sbjct: 63   -----------FSDVGFVEEDVRELDAAAIRESVERAGYD----PGGVDVVIGGPPCQGF 107

Query: 1230 SGMNRFNQSTWSKVQCE----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRL 1282
            S +N   Q    +++ +    +   FL      +P+  L+ENVR+ ++           L
Sbjct: 108  SRLNN-EQIELDEMEKDRRNTLFEEFLRVVSVLEPQLVLMENVRDLINRQTSDDRYVKDL 166

Query: 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             +      GY+  + +LEA  +GV Q R+R F +  +  D    +PEP      PE    
Sbjct: 167  IVDEFAAHGYKCEYRVLEAEQYGVPQKRRRIF-FMGTDRDVPIRFPEP----TTPE---- 217

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGN 1402
                        TA  A      + D   DLP          M Y N             
Sbjct: 218  --------GSWRTAGEA------LADASDDLPN---------MTYAN------------- 241

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQV------VDLIPWCL 1456
                         E  L R + +P  PG  + DLPD   +L T +        D  P   
Sbjct: 242  -----------TGEKTLERIRHVP--PGGYYRDLPD---RLKTKKYRCDCEDTDTCPH-E 284

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
            P   KR+  +     RL  E        +P       +  HP +DR LT RE AR Q FP
Sbjct: 285  PEIVKRYGTY---LRRLHPE--------EPSLTVSTNVFIHPHEDRYLTPREMARLQTFP 333

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            D + F G+     +QIGNAVP  L   L  +++E
Sbjct: 334  DEFAFEGTKTDVLKQIGNAVPVRLGEELATQIRE 367


>gi|346994624|ref|ZP_08862696.1| modification methylase HgiDII [Ruegeria sp. TW15]
          Length = 365

 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 184/439 (41%), Gaps = 105/439 (23%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            ++A +D+F G GGL+ GLQ  G++     ++ ++    AF++N+    +L +   +    
Sbjct: 3    NIACIDLFCGAGGLTRGLQNVGVNVVA-GVDVDQACKHAFEVNNNAKFLLEDVSELAPEK 61

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
            + +  GDA                             +  + G  PCQ FS  ++  ++ 
Sbjct: 62   LNDHFGDA----------------------------SIRVLAGCAPCQPFSTYSQRYETV 93

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
             +  +  ++  F       +P +  +ENV   +  +  + F  TL +L   GY+V  G++
Sbjct: 94   GTP-RWGLMYHFARLVKNTRPEFVTMENVPTVIKHDVYKDFVRTLVNL---GYRVSSGVV 149

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
            +   +G+ Q+R+R  + A+            + + A PE  I                  
Sbjct: 150  DCTKYGLPQTRRRTVLLAS--------LDRTIELIAPPEDAIH----------------- 184

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
                 TVRD IG +PA+  G S      ++DP+                H +  +++LNL
Sbjct: 185  -----TVRDAIGTMPALKQGQSS-----EDDPL----------------HAAARLSDLNL 218

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             R +    RPG  W D P E           L+  C    + R   + G++GR+ W+   
Sbjct: 219  ERIRA--SRPGGTWRDWPQE-----------LVAECHRKDSGR--TYPGVYGRMVWDAPS 263

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQF--HGSIQH---KHRQIGN 1534
            PT +T        G   HP+QDR +T+RE A  QGFP  Y F   GS  H     R IGN
Sbjct: 264  PT-MTTQFFGFGNGRFGHPEQDRAITLREGAILQGFPLDYSFVPEGSPIHFKTLGRMIGN 322

Query: 1535 AVPPTLAFALGRKLKEAVE 1553
            AVP TL   +G+ +  +++
Sbjct: 323  AVPVTLGEIIGQSILASLD 341


>gi|307354298|ref|YP_003895349.1| DNA-cytosine methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157531|gb|ADN36911.1| DNA-cytosine methyltransferase [Methanoplanus petrolearius DSM 11571]
          Length = 421

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 191/460 (41%), Gaps = 76/460 (16%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISST----KWAIEYEEPAGEAF-----KLNHPESLMLINNC 1173
             LD+FAG GGL+EG  ++  +      K        A  AF     K +  +      + 
Sbjct: 7    VLDMFAGAGGLTEGFFRNDFNIVTHIEKNTTACHTLATRAFYHSLAKKDRQDIYYDYYDQ 66

Query: 1174 NVILRAVMEKCG--DAED--CVSTSEAAELAASLDENVINNLPLPGQ--VDFINGGPPCQ 1227
            N+     +E+C   D  D    +   + E   S+ + V   L   G+  VD I GGPPCQ
Sbjct: 67   NLTREEFIEECKSLDIPDPGVFNCELSPERENSIKKMVGGRLEEAGRKDVDVIIGGPPCQ 126

Query: 1228 GFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA 1285
             +S  G +R  +      +  + L +L F   +QP  F+ ENV   +S  KG   +  L 
Sbjct: 127  AYSVIGRSRDPERMEKDPRNHLYLHYLHFIQEYQPEVFVFENVPGLISAKKGTIHKDFLR 186

Query: 1286 SLLEMGYQV--RFGILEAGAFGVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELKIM 1342
             + E+GY       IL A  FGV Q+RKR  FI     HD                    
Sbjct: 187  RIEEIGYYTPPEPHILNARDFGVLQNRKRIIFIGWKKEHD-------------------- 226

Query: 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNG-ASKTIMEYQN-DPVSWFQKR-I 1399
                ++Y    +  +G       V D + DLP +  G  +     Y+N  P  +  +  I
Sbjct: 227  ----FEYPNFGNHESG-----YVVWDVLRDLPELEPGTGTDGPQSYKNVRPSDYLSEYGI 277

Query: 1400 RGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNT 1459
            R +   +  HI++   E    R ++I +     W+    E+ +L   +        LP  
Sbjct: 278  RNSDKSVRHHIARSHIE----RDREIYRIAIKLWNS---ERKRLHYNE--------LPKN 322

Query: 1460 AKRHNQWKGLFGR---LDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQ 1513
               HN       R   +D EG     +     + + G  F HPD  Q R LTVRE AR Q
Sbjct: 323  LITHNNLSSFLDRFKVVDGEGLSHAVVAH---LSRDGHYFIHPDINQARSLTVREAARLQ 379

Query: 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVE 1553
             FPD Y F GS   ++ QIGNAVPP +A  +GRK+   ++
Sbjct: 380  SFPDDYLFEGSRTSQYVQIGNAVPPLMAEGIGRKINNMLK 419


>gi|374813193|ref|ZP_09716930.1| DNA-cytosine methyltransferase [Treponema primitia ZAS-1]
          Length = 349

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 176/437 (40%), Gaps = 99/437 (22%)

Query: 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVIL 1177
            +N+L  +D F   GG++EG + +GI      I+ +    E ++ NHP S  ++ +   + 
Sbjct: 2    KNNLTAIDFFCCGGGMTEGFESTGIRVLA-GIDIDPACKETYEKNHPNSKFILKDIKKLP 60

Query: 1178 RAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ 1237
                +   D E               D+ +I           + G  PCQ +S +N   +
Sbjct: 61   SNHFKNKFDVEKN-------------DDGLI-----------MIGCSPCQHWSKIN--TE 94

Query: 1238 STWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFG 1297
               S+    ++L F  F  Y++P Y ++ENV    S  +    +  L  L + GY+ +  
Sbjct: 95   RGKSEKSKNLLLDFTRFVRYYKPGYIVIENVPGIESKPEESGLKRFLNFLDKHGYKYKKQ 154

Query: 1298 ILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357
             ++   +GV Q R R F+  A+ + + P +PE +                          
Sbjct: 155  KIDMSKYGVPQKRVR-FVLIATRNGSDPLFPENLK------------------------- 188

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
                +  T++D I  LP +  G      E  ND               L  H S  ++E 
Sbjct: 189  ----KCKTLKDYIKKLPQINAG------EKSND---------------LPLHRSASISEN 223

Query: 1418 NLIRCQKIPKRPGAD--WHDLPDEKVKLSTGQVVDLIPWCLPNTAK-RHNQWKGLFGRLD 1474
            NL R QK P   G    W D PD ++                N  K + N +K ++GR+ 
Sbjct: 224  NLKRLQKTPHNGGTRLAWKDDPDLQI----------------NAYKDKDNIFKDVYGRMK 267

Query: 1475 WEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH-KHRQIG 1533
            WE   PT  T    +   G   HP+QDR L++ E A  Q F + Y F G+      RQIG
Sbjct: 268  WEEPAPTITTRFNSISN-GRFGHPEQDRALSLLEGALLQTFSEKYYFSGNTDSVVARQIG 326

Query: 1534 NAVPPTLAFALGRKLKE 1550
            NAVPP  A  +  K+ E
Sbjct: 327  NAVPPIFASQIAVKIAE 343


>gi|77465763|ref|YP_355266.1| cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|77390181|gb|ABA81365.1| Cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 443

 Score =  111 bits (277), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 185/452 (40%), Gaps = 102/452 (22%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLS G +Q+G      A+E +       K N P++        VI R+V+  
Sbjct: 6    IDLFAGAGGLSLGFEQAGFDVAA-AVEIDPVHCAVHKFNFPDTA-------VIPRSVVG- 56

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                   ++  E  E A       I N P    +D + GGPPCQGFS             
Sbjct: 57   -------LTAEEIRESAG------IGNRP----IDCVFGGPPCQGFS---LIGHRALEDP 96

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEM-GYQVR--FGILE 1300
            +  ++L F+        R F+ ENV+  ++    +TF   L +   M GY VR  + +L+
Sbjct: 97   RNSLVLEFVRLVRELDARTFVFENVKG-LTVGSHRTFLSELVAAFGMAGYDVRLPWKVLD 155

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPM-----------HVFAAPELKIMLSD---- 1345
            A  +G  Q R+R F+  A   +TLPE P P            H+   P ++  + D    
Sbjct: 156  AADYGTPQHRQRLFLIGAKRGETLPEIPPPQTNAADARKPLAHLPGGPTVRDAIEDLPDA 215

Query: 1346 -----NYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIR 1400
                   +  AVR++A G P           +L  + N A      +   P +W    + 
Sbjct: 216  DRFASLVESDAVRTSAMGEP------STYAAELRCLNNDAW-----HYGYPRNWTPTWMT 264

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
             +       IS+        R Q+ P+  GA               +   L P  L NT 
Sbjct: 265  SSARTAHSEISRR-------RFQETPQ--GA----------VEPISRFYKLAPGGLCNTL 305

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
            +         G     G F +    P+P+       H + +R +TVRE AR  GFPD ++
Sbjct: 306  RA--------GTDGARGAFTS----PRPI-------HYEYNRCITVREMARLHGFPDWFR 346

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             H +  H  RQ+GN+VPP LA A+  ++  A+
Sbjct: 347  LHATKWHGGRQVGNSVPPPLARAVASEIVRAL 378


>gi|168204994|ref|ZP_02630999.1| modification methylase DdeI [Clostridium perfringens E str. JGS1987]
 gi|168212393|ref|ZP_02638018.1| modification methylase DdeI [Clostridium perfringens CPE str. F4969]
 gi|170663374|gb|EDT16057.1| modification methylase DdeI [Clostridium perfringens E str. JGS1987]
 gi|170716088|gb|EDT28270.1| modification methylase DdeI [Clostridium perfringens CPE str. F4969]
          Length = 436

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 186/478 (38%), Gaps = 91/478 (19%)

Query: 1121 LATLDIFAGCGGLSEGLQQSG------ISSTKWAIEYEEPAGEAFKLNHPESLMLIN--- 1171
            +  +D+F+G GGL+EG  + G      +   +WA E  +     + L     L L N   
Sbjct: 1    MNVIDLFSGGGGLTEGFVRQGYKIIAHVEKDRWACETLKTRIIFYYLKEKNDLYLYNEYL 60

Query: 1172 -----------NCNVILRAVMEKCGDAE----DCVSTSEAAELAASLDENVINNLPLP-- 1214
                       N  +I +   E     E    +C   +   + +A+  + +I  +     
Sbjct: 61   KLAGNYRKINSNREIIYKKYPELKEKLEYEVLNCTFGNLNEDKSATGIDEIIKRIKSSMK 120

Query: 1215 ----GQVDFINGGPPCQGFSGMNR--FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENV 1268
                 ++  I GGPPCQ +S + R    +      +  +   +      F P+ F+ ENV
Sbjct: 121  YNKVRKIGLIIGGPPCQAYSLVGRGVMKEKVEDDKRNYLFRYYKQIVKEFSPKMFVFENV 180

Query: 1269 RNFVSFNKGQTFRLTLASLLEMGYQ--------VRFGILEAGAFGVSQSRKRAFIWAASP 1320
               ++   GQ  +       E+GY         VR  I+E     + Q+RKR  ++    
Sbjct: 181  PGIITAKNGQILKAINEEFNEIGYALLSGTNECVRDNIVECDLLNIPQNRKRVILFGFKK 240

Query: 1321 HDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPA--VGN 1378
                             EL +   + Y+Y              +T +  I DLP    G 
Sbjct: 241  -----------------ELNLHYPNFYKYKL--------NINDITTKAAISDLPKRKSGT 275

Query: 1379 GASKTIMEY-QNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLP 1437
            G    I+EY +N  +S +Q  +R +   +T H ++  N+L              D  +  
Sbjct: 276  GEYGEILEYPKNVELSKYQSLMRVDSKFVTLHQTRYHNDL--------------DLENYK 321

Query: 1438 DEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR--LDWEGNFPTSITDPQPMGKVG-M 1494
            D  +K S G+  +     +P   + H   K    R  + W  + P +I     + K G  
Sbjct: 322  DAIIKASRGE--NFTYTDIPKERRTHKNTKSFIDRYKVHWWDDIPHTIL--AHLSKDGHY 377

Query: 1495 CFHPDQD--RILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
              HPD D  R LTVRE AR Q FPD+Y F G    +  QIGNAVPP LA  + + L +
Sbjct: 378  NIHPDIDQCRSLTVREAARIQTFPDNYFFEGPKTAQFMQIGNAVPPLLAEIIAKALNK 435


>gi|389579126|ref|ZP_10169153.1| DNA-methyltransferase Dcm [Desulfobacter postgatei 2ac9]
 gi|389400761|gb|EIM62983.1| DNA-methyltransferase Dcm [Desulfobacter postgatei 2ac9]
          Length = 420

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 183/425 (43%), Gaps = 84/425 (19%)

Query: 1124 LDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM 1181
            +D+F+G GG+S G  ++      + WA ++ +   E +  N                   
Sbjct: 41   IDLFSGAGGMSLGFSEAFGQPFQSVWANDFNQYCVETYNENF------------------ 82

Query: 1182 EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWS 1241
                 A+ C+    A ++   L +  I    +P + D + GGPPCQGFS +N+  ++   
Sbjct: 83   -----AKHCI----AGDIVEILGQGKIQ---IP-KADVVIGGPPCQGFSLLNKNRENDPR 129

Query: 1242 KVQCEMILAFLSFADYFQPRYFLLENVRNFV-SFNKGQTFRLTLASLLEMGYQVRFGILE 1300
            K   EM   +L   +      F++ENV   + +F  G+     + +   +G++V    L 
Sbjct: 130  K---EMWRPYLEVVEKSGASIFVMENVPQLLGTFEHGEI----VGAAESLGFKVWQDKLI 182

Query: 1301 AGAFGVSQSRKRAFIWA---ASPHDTLPEWPEPMHVFAAPELK-IMLSDNYQYSAVRSTA 1356
            A  +GV Q+R RAFI     A P    P  P   H       K +ML  N +       +
Sbjct: 183  AADYGVPQTRIRAFIIGCRFADPSILFP--PRKTHFNPNGNGKQLMLPFNRE----DYLS 236

Query: 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
              AP++  TVRD IGDLP                        IR     L  H  +   E
Sbjct: 237  KPAPWK--TVRDAIGDLPKPEG------------------TEIRNIQPPLDLHFGRNPTE 276

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWE 1476
            L+  R + IPK  G +  DL  +++        +L P C     ++ +    LFGRL W+
Sbjct: 277  LSRKRYRAIPKE-GMNRFDL--QRI------APELTPKCW---IRKKSGGTDLFGRLWWD 324

Query: 1477 GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536
                T  T+     K G   HPDQ R +T RE AR Q FPDS++F GS     +QIGNAV
Sbjct: 325  RPSVTIRTEFYKPEK-GRYLHPDQHRPITHREAARFQSFPDSFKFLGSKIEIAKQIGNAV 383

Query: 1537 PPTLA 1541
            PP LA
Sbjct: 384  PPLLA 388


>gi|334346028|ref|YP_004554580.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|334102650|gb|AEG50074.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 181/446 (40%), Gaps = 99/446 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  + +FAGCGG  EG + +G   T  A+E+++ A   ++ N P++ +            
Sbjct: 1    MKAVSLFAGCGGFCEGAELAGFEITV-AVEWDKYACMTYRENFPKTPLF----------- 48

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
                GD  D +      E    L +           +D + GGPPCQGFS +   +    
Sbjct: 49   ---EGDIHDFLKPGSDHETKYKLKD-----------LDLVFGGPPCQGFSQIGPRDLLDD 94

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGY-QVRFGIL 1299
              V   +   F       +PR FL+ENV N +   KG      +A   E+GY    +  +
Sbjct: 95   RNV---LYREFARVIRKIKPRMFLMENVPNLLLMQKGHFRDAIMAHFSELGYSNTTYLKV 151

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  FGV Q+R+R F +     D + ++P  +  FA   LK +                 
Sbjct: 152  SAADFGVPQTRERVFFFGTR--DDI-KFPFELQAFAEAFLKGLKVK-------------- 194

Query: 1360 PFRAMTVRDTIGDLPA-------------VGNGASKTIMEYQND----PVSWFQKRIRG- 1401
              + +TV   IGDLPA             +  GA++ +   + D    P +   KR RG 
Sbjct: 195  --QPVTVWQAIGDLPANVVHSGETAAYPTLPKGATQFLKAMRLDTAGGPYTKAAKRRRGV 252

Query: 1402 ---NMAVLTDHISKEMN--ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCL 1456
               +  +L +H +KEM      LI   K    PGA                  D +P  +
Sbjct: 253  GKKDELILHNHHTKEMQAKRAKLISYLK----PGAK----------------ADSLPKHI 292

Query: 1457 PNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
             N A R  +W+ L        + P+     Q    +    HP  +R ++VRE AR Q F 
Sbjct: 293  WNGA-RPEKWRRL------HPDLPSYTILAQMHRDLSEWVHPKLERWISVREAARLQSFH 345

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            D + F GS   + +Q+GNAVPP L F
Sbjct: 346  DGFVFKGSEWQQLKQVGNAVPPLLGF 371


>gi|119511191|ref|ZP_01630308.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
 gi|119464179|gb|EAW45099.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
          Length = 432

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 192/455 (42%), Gaps = 101/455 (22%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G      ++E +       + N P   +L              
Sbjct: 9    VDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHEFNFPFWRVL-------------- 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            C   E+  +TS+    ++S+ +          ++D + GGPPCQGFS + +    ++   
Sbjct: 54   CKPVEE--TTSQEIRQSSSIGDR---------EIDVVFGGPPCQGFSLIGK---RSFEDP 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILEA 1301
            +  ++  ++       P++F++ENV+   + N        +      GY+VR  + +L A
Sbjct: 100  RNSLVFHYIRLVLELSPKFFVIENVKGMTAGNHQAFIAEIINKFASNGYKVRQKYQVLNA 159

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              FGV Q+R+R FI        LP +PE +   A P          + S +    N +P 
Sbjct: 160  AHFGVPQNRERLFILGCRNDLELPNYPEAITQRAKP----------KKSGLPHELNLSP- 208

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPV-------SWFQKRIRG------------- 1401
               TV + + DLP +     K    YQ D V       S + + +RG             
Sbjct: 209  ---TVWEALQDLPEI----EKYSELYQRDWVVTDFGKPSNYGRLLRGLGSTNNDYSYQRQ 261

Query: 1402 -NMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
             +  +LT  +  + N   + R    P            +  K+S    +D  P  + NT 
Sbjct: 262  YDSRILTSSLRTQHNLETVTRFAATPY----------GKTEKISRFHKLD--PQGICNTL 309

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520
            +         G    +G F    T P+P+       HP   R +TVRE AR   +PD ++
Sbjct: 310  RA--------GTPSNQGAF----TSPRPI-------HPFIPRCITVREAARLHSYPDWFR 350

Query: 1521 FHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            FH +  H  RQIGN+VPP LA A+  ++ ++++ K
Sbjct: 351  FHVTKWHGFRQIGNSVPPLLAKAVALEIIKSLDIK 385


>gi|428300014|ref|YP_007138320.1| Xre family transcriptional regulator [Calothrix sp. PCC 6303]
 gi|428236558|gb|AFZ02348.1| transcriptional regulator, XRE family [Calothrix sp. PCC 6303]
          Length = 484

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 175/437 (40%), Gaps = 78/437 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+F G GGLS G +          ++      + F  NH                   
Sbjct: 115  VIDLFCGVGGLSYGFEMHEEFQVVAGVDLLSDRLQTFSRNH---------------GTAN 159

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G   + +ST           + + N  P P     I GGPPCQGFS +  F     + 
Sbjct: 160  AYGQDINTLST-----------DILYNENPHP---FVIVGGPPCQGFSSIRPFRNIERND 205

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  +   F       QP + + ENV   ++ + G+TF+  + +  E+GY+    +L A 
Sbjct: 206  PRNNLAEEFCRIVHNLQPEWIVFENVVGLLTHSNGKTFQTIVEAFEEIGYRTAAKVLNAA 265

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMH-----VFAAPELKIMLSDNYQYSAVRSTAN 1357
             +G+ Q R+R  I  +       +W +P H       A  +  I+         ++S   
Sbjct: 266  YYGLPQCRERLIIVGSRAGKPF-KWTQPTHWCEHRSMAGRQEFILKPSKGLIQDLQS--- 321

Query: 1358 GAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW-FQKRIRGNMAVLTDHISKEMNE 1416
                 A+TV + I DLP V  G   T   YQ D  S  ++  IR     L  H +   + 
Sbjct: 322  -----AITVDEAIHDLPEVEAGGRAT--TYQCDIESTPYELFIRNGAQQLKMHEATAHSP 374

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW- 1475
                R  +I ++ GA+ + LP+  VK                     + +   + RL+  
Sbjct: 375  ----RMLEIIRQAGANIYALPEGVVK---------------------SGFSSCYSRLNGA 409

Query: 1476 EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNA 1535
            E +   ++    P      C HP Q R LT RE AR QGF D+++F G+     +QIGNA
Sbjct: 410  EPSVTLTVNFVHPASN--RCIHPHQHRALTPREGARLQGFLDTFEFIGTRSQIVKQIGNA 467

Query: 1536 VPPTLAFALGRKLKEAV 1552
            VPP     LGR + +A+
Sbjct: 468  VPPL----LGRTVAQAI 480


>gi|386858204|ref|YP_006262903.1| methyltransferase protein [Deinococcus gobiensis I-0]
 gi|380002924|gb|AFD28110.1| methyltransferase protein [Deinococcus gobiensis I-0]
          Length = 536

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 212/504 (42%), Gaps = 115/504 (22%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVM- 1181
             LD+F+GCGGLS G  ++G   +  A+E+++ A  +  +N  +       C+++ R +  
Sbjct: 54   VLDLFSGCGGLSLGFSKAGFQISA-AVEFDQAAAASHAVNFHQG----KACHMVARDITI 108

Query: 1182 ---EKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR---- 1234
               +K  D  +    +E                     +D I GGPPCQ F+ + R    
Sbjct: 109  TPPQKVADEFELGPVAEG--------------------IDVIVGGPPCQAFARVGRSKLR 148

Query: 1235 --------FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS 1286
                    + Q   S++  E    +L + + FQP   L+ENV + ++ + GQ      A 
Sbjct: 149  EILEHPEAYRQDPRSRLYME----YLKYVEAFQPVALLMENVPDVLN-HGGQNIAEETAE 203

Query: 1287 LLE-MGYQVRFGILEAGAFGVSQSRKRAFIWAASPH-DTLPEWPEPMHVFAAPE------ 1338
             LE +GY  R+ +L A  +GV Q R+R F+ A          +P P H    P       
Sbjct: 204  FLEDLGYVARYTLLNAAYYGVPQMRERMFLVAYRQELGQEVSFPLPTHWLRLPPGYEGSR 263

Query: 1339 ---LKI-----MLSDNYQYSAVR---STANGAPFRAMTVRDTIGDLPAVG--------NG 1379
               LK      +  +  Q+  V    +T +  P  A+T R+ + DLP +          G
Sbjct: 264  QVALKFLKRGGLFEEAPQFRYVHPPEATPDLTP--AVTAREALSDLPTITAHLEGRSRKG 321

Query: 1380 ASK--TIMEYQND--PVSW--FQKRIRG--NMAVLTDHISKEM-NELNLIRCQKIPKRPG 1430
            A +   ++ Y +   P S+    +   G  N A L DH+ + +  + ++ R      +  
Sbjct: 322  AQRFEGLVPYPSSVAPESYAHLMRHWPGFENDAGLKDHVIRHLPRDWDIFRRMNPGDQYP 381

Query: 1431 ADW---HDLPDEKVKLSTGQVVDLIPWC----------LP--NTAKRHNQWKGLFGRLDW 1475
              W    DL  E +     Q  +L P            +P  +  K  N+W+ +      
Sbjct: 382  QAWGHAQDLFQETLVTRRAQGEELSPGTPAYEELQAAIVPPYDVTKFPNKWRKM------ 435

Query: 1476 EGNFPTSITDPQPMGKVG------MCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
            E + P        M  +G      + +   Q R ++VRE AR Q FPD + F G++    
Sbjct: 436  EADRPARTL----MAHLGKDSYSHIHYDSAQARTISVREAARLQSFPDGFVFRGTMNPAF 491

Query: 1530 RQIGNAVPPTLAFALGRKLKEAVE 1553
            +QIGNAVPP LA+A+  ++++ ++
Sbjct: 492  KQIGNAVPPLLAWAIASEMRQTLQ 515


>gi|434405034|ref|YP_007147919.1| DNA-methyltransferase Dcm [Cylindrospermum stagnale PCC 7417]
 gi|428259289|gb|AFZ25239.1| DNA-methyltransferase Dcm [Cylindrospermum stagnale PCC 7417]
          Length = 466

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 197/456 (43%), Gaps = 78/456 (17%)

Query: 1106 ELEVEKQGGASQENHL----ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161
            +L++ K    S+ N+       +D+FAG GG++ G +Q+G      ++E +       + 
Sbjct: 19   DLQLGKGTNLSRRNNAQKRPIAVDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHQF 77

Query: 1162 NHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFIN 1221
            N P          +  ++++E    +E+  S S+  E                 ++D + 
Sbjct: 78   NFPF-------WKIFCKSIVEIT--SEEIRSFSDIGE----------------QEIDVVF 112

Query: 1222 GGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            GGPPCQGFS + + N       +  ++  ++      QP++ +LENV+  ++  K Q F 
Sbjct: 113  GGPPCQGFSLIGKRN---LDDPRNGLVDHYIRLVLELQPKFVVLENVKG-MTVGKHQEFI 168

Query: 1282 L-TLASLLEMGYQV--RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE 1338
            L  +    E GYQV   + IL A  +GV Q+R+R F+ A      LP +P P    A  +
Sbjct: 169  LEIIYKFEENGYQVLKNYKILNAAEYGVPQNRERLFLLACRQDLELPNYPLPTSKPA--K 226

Query: 1339 LKIMLSDNYQYSAVRSTA-NGAP----FRAMTVRD-TIGDLPAVGNGASKTIMEYQNDPV 1392
             KI  S+N   S   S A  G P    +  +  +D  + D     N   K    Y     
Sbjct: 227  KKIAKSNNLPLSPTVSKAFQGLPVIENYSELYEQDWVVADFGHPSNYVKKINNIYFKSNN 286

Query: 1393 SWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLI 1452
              +Q+  + N  +LT  +     E ++ R              LP +   +S    +D  
Sbjct: 287  YSYQR--QSNSRILTSSLRTFHTEESIKRFAS----------TLPGKIEPISRLHKLD-- 332

Query: 1453 PWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512
            P  + NT +         G     G+F    T P+P+       HPD  R +TVRE AR 
Sbjct: 333  PKGICNTLRA--------GTASNRGSF----TSPRPI-------HPDIPRCITVREAARL 373

Query: 1513 QGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548
              +PD ++FH +  H  RQIGN+VPP LA A+  ++
Sbjct: 374  HSYPDWFRFHVTKWHGFRQIGNSVPPLLAKAIASEI 409


>gi|427718814|ref|YP_007066808.1| DNA-cytosine methyltransferase [Calothrix sp. PCC 7507]
 gi|427351250|gb|AFY33974.1| DNA-cytosine methyltransferase [Calothrix sp. PCC 7507]
          Length = 418

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 183/437 (41%), Gaps = 76/437 (17%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG++ G +Q+G      ++E +       + N P         +V+ ++V+E
Sbjct: 12   AVDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCAVHEFNFP-------FWSVLCKSVVE 63

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G  E+    SE  +                 ++D +  G PCQGFS M +     +  
Sbjct: 64   TTG--EEIRQRSEIGD----------------REIDVVICGSPCQGFSLMGK---RVFDD 102

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             +  ++  F       QP+YF++ENVR        +  +  +      GY V   + +L 
Sbjct: 103  PRNSLVFHFHRLVLELQPKYFVMENVRGITLGEHKKILQTLINEFQAKGYTVEENYQVLN 162

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+R+R F+  A     LP++P+P+   A P    +   N   S          
Sbjct: 163  AAHYGVPQARERLFLLGAREDVELPKYPQPITKPAKPHKSKIKLSNLPTSP--------- 213

Query: 1361 FRAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                TV D I D+P V   A        + EY     S +  R+RG   +  D+  +   
Sbjct: 214  ----TVWDAIKDIPEVEQYADLIKKDWVVAEYGKP--SNYALRLRGLSKLKNDYSYQREF 267

Query: 1416 ELNLIRCQKIPKRPGADWH----DLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFG 1471
            +  ++      K   A        +  E+  +S  +   L P  + NT +         G
Sbjct: 268  DSRILTSSLRTKHSIATIERFAATIQGEREPIS--RFHKLHPDGVCNTLRA--------G 317

Query: 1472 RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQ 1531
               ++G+F    T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ
Sbjct: 318  TDKYKGSF----TSPRPI-------HPFTPRCITVREAARLHSYPDWFRFHVTKWHGFRQ 366

Query: 1532 IGNAVPPTLAFALGRKL 1548
            +GN+VPP LA A+  ++
Sbjct: 367  VGNSVPPLLAKAVAMEI 383


>gi|427717809|ref|YP_007065803.1| DNA-cytosine methyltransferase [Calothrix sp. PCC 7507]
 gi|427350245|gb|AFY32969.1| DNA-cytosine methyltransferase [Calothrix sp. PCC 7507]
          Length = 413

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 163/363 (44%), Gaps = 60/363 (16%)

Query: 1218 DFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVS---F 1274
            D + GGPPCQGFS +    Q      +  + + F  +  + QPR F++ENV+  +S   F
Sbjct: 75   DIVIGGPPCQGFS-IAGPAQKDPKDPRNSLFINFAHWICFLQPRAFVIENVKGLLSRKNF 133

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
               +   +   +  ++GY V   +L A  +GV Q R+R F+        L   P   H  
Sbjct: 134  EGIKVIDIIQKTFEDLGYFVEVWLLNAAEYGVPQIRERIFVVGNKMGKKL-GIPPKTH-- 190

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
                L ++L+++ Q S +++  N  P  +++V D I DLP++     K    Y + P + 
Sbjct: 191  ---SLDLLLTNSSQLSVLKNM-NLLP--SLSVWDAISDLPSLNAREGKEEQPYISKPHNN 244

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE-KVKLSTGQVVDLIP 1453
            +Q  IR +   L +H++ E ++  + R + I  + G    D+P E + +L +G       
Sbjct: 245  YQHWIRNSSHTLYNHVAMEHSQRLVERFKHI--KWGESSSDVPKEHRARLRSGN------ 296

Query: 1454 WCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-----HPDQDRILTVRE 1508
                           L G+   + N    +   +P   +   F     HP Q R LT RE
Sbjct: 297  -------------GELSGKSYDQNN--RRLNPNKPSHTIAASFYANFIHPFQHRNLTARE 341

Query: 1509 CARSQGFPDSYQFHGS---IQHK---------------HRQIGNAVPPTLAFALGRKLKE 1550
             AR Q FPD+Y+F G    + HK               + Q+GNAVPP LA A+   L+E
Sbjct: 342  GARIQSFPDTYRFLGKKTVVSHKLLNREERFDEKFLCQYNQVGNAVPPLLAKAIALHLQE 401

Query: 1551 AVE 1553
             +E
Sbjct: 402  KLE 404


>gi|209525992|ref|ZP_03274525.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209493518|gb|EDZ93840.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 430

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 180/464 (38%), Gaps = 101/464 (21%)

Query: 1100 CIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159
            C  GE+ L V K+  A        +D+FAGCGG+S GL+ +G      A+E++       
Sbjct: 5    CFFGEN-LTVTKRPIA--------IDLFAGCGGMSLGLEAAGFD-VAVAVEFDAVHCLVH 54

Query: 1160 KLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDF 1219
              N P        C+ I R +           S   +AE+   L     +      QVD 
Sbjct: 55   HFNFPY-------CHTICRDI-----------SKVTSAEILEQLQLKYQDT-----QVDL 91

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            I GGPPCQGFS + +         +  ++  +L      QP+YF+ ENV    +    + 
Sbjct: 92   IAGGPPCQGFSHIGK---RQLDDPRNSLVFEYLRMIAEIQPKYFIFENVPGIATGKHKRF 148

Query: 1280 FRLTLASLLEMGYQVR--FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP 1337
                +     +GYQ++    IL+A  +G  Q RKR  +  +     + E+P         
Sbjct: 149  LNELITEFEAIGYQIQKPIKILDASEYGAPQKRKRLILIGSRFDVKIAEYP--------- 199

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND------- 1390
                         A   +     ++A++  + I +      G S   +EY+ D       
Sbjct: 200  -------------ATNKSEMFTVYQAISDLEKIDNFTNYDPGISPAFLEYEGDRKKYSLV 246

Query: 1391 PVSWFQK-RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            P   F     R     +  H+      L++ R  + P  PG                +  
Sbjct: 247  PSDSFSLCHKRTIEPTVYGHVGSVHTPLSIARFAETP--PGTVE----------PKSRFF 294

Query: 1450 DLIPWCLPNTAKR-HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRE 1508
             L P  L NT +   N  KG +             T P+P+       H    R +T+RE
Sbjct: 295  KLSPTGLCNTLRAGTNSDKGAY-------------TAPRPI-------HYSIPRCITIRE 334

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             AR   FPD +QFH +I H  R+IGNAV P LA  LG  + +A+
Sbjct: 335  AARLHTFPDWFQFHRTIWHGFREIGNAVIPILAKQLGGSVIDAL 378


>gi|226186551|dbj|BAH34655.1| putative modification methylase [Rhodococcus erythropolis PR4]
          Length = 444

 Score =  110 bits (276), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 115/444 (25%), Positives = 166/444 (37%), Gaps = 122/444 (27%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            L  F+GCGG++EG + +G S   + IE    A   F  N P +  L              
Sbjct: 107  LTAFSGCGGMAEGFRMAGFSVEGY-IEVVPEARATFDRNFPGARCL-------------- 151

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
                          E   ++DE  + +L     +D + GGPPCQGFS   R ++      
Sbjct: 152  -------------GEDIRAIDEARVKDLLAQVDIDVLAGGPPCQGFSLAGRRDRD---DP 195

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSF---NKGQTFRLTLASLLEMGYQVRFGILE 1300
            +  +    L  A+  +P+  ++ENVR  +S    + G      L  +   GY      + 
Sbjct: 196  RNHLFRNLLQLAELVKPKVLVMENVRLLLSMKDPDGGMVVDRILGEMAACGYDASVNTVN 255

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLP--EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            A  +GV Q R+R FI A     ++    +P   H                        NG
Sbjct: 256  AQDYGVPQFRERVFIVATRRDSSIGPLRFPPKTH----------------------GVNG 293

Query: 1359 -APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNEL 1417
             AP R  T RD   DL  + +G +      + DP+ W                + E  E 
Sbjct: 294  VAPLR--TFRDATVDLAPLESGQA-----CETDPLHW----------------AVEHPEH 330

Query: 1418 NLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEG 1477
             L   + +P+  G   HD  D  ++ S+G                   +   + RL W+ 
Sbjct: 331  VLRWLRDVPE--GMSAHDNEDPAMRPSSG-------------------YNTTYKRLRWD- 368

Query: 1478 NFPTSITDPQPMGKVGMCF---------HPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
                     +P   VG  F         HP   R LTVRE AR Q FPD Y F G     
Sbjct: 369  ---------EPASTVGTTFGMISASRNVHPKHTRSLTVREAARLQTFPDDYVFEGKWGAV 419

Query: 1529 HRQIGNAVPPTLAFALGRKLKEAV 1552
               IGNAVPP LA  L  ++K+A+
Sbjct: 420  RTMIGNAVPPQLASVLAGEIKKAL 443


>gi|86142380|ref|ZP_01060890.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
            blandensis MED217]
 gi|85831132|gb|EAQ49589.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
            blandensis MED217]
          Length = 332

 Score =  110 bits (276), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 170/427 (39%), Gaps = 111/427 (25%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP-ESLMLINNCNVILRA 1179
            L  +D+F+G GG S G    G  +  ++++ E    E +  N P  +L+  + C+V    
Sbjct: 5    LKYIDLFSGAGGFSLGFDNKGFQNV-FSVDIEPSFCETYNHNFPSHNLIHKDICDV---- 59

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                  DAE         +     DE           +D + GGPPCQGFS      +  
Sbjct: 60   -----KDAE--------LKYLKEYDE-----------IDVVIGGPPCQGFSIAGNIGRKF 95

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGIL 1299
                + ++   F+      +P YF++ENV    + NKG T +  +     +GY+V   IL
Sbjct: 96   IDDPRNKLFKEFVRVVKVVEPTYFVMENVARLYNHNKGNTRKEIINDFENLGYKVECKIL 155

Query: 1300 EAGAFGVSQSRKRA-FIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
             +  +GV Q RKR  FI   +    L         F   E+     D Y           
Sbjct: 156  NSADYGVPQVRKRVIFIGTKNSQKIL---------FPKKEV-----DKY----------- 190

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
                 +TV++ +   P + +G    I                       +HI+   +E  
Sbjct: 191  -----VTVKEALSSYPKLKSGQESKI----------------------PNHIAMSHSEQM 223

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            L +   +    G D +++P E+++  +G V   I +                        
Sbjct: 224  LHKMSFVSD--GGDRNEIP-EQIRPKSGDVRKYIKYSSDK-------------------- 260

Query: 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPP 1538
               S+T    M K+   FH +Q+R LTVRE A+ Q FPD ++F GS   + +Q+GN+VPP
Sbjct: 261  --PSVTVTGDMRKI---FHYEQNRALTVRELAKLQSFPDDFEFKGSKISQQQQVGNSVPP 315

Query: 1539 TLAFALG 1545
             +A A+ 
Sbjct: 316  RMAEAIA 322


>gi|410454355|ref|ZP_11308294.1| Modification methylase [Bacillus bataviensis LMG 21833]
 gi|409932170|gb|EKN69137.1| Modification methylase [Bacillus bataviensis LMG 21833]
          Length = 454

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 169/423 (39%), Gaps = 106/423 (25%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             L+IFAG GGL  GL+++G   T  AIE  + A    + N P       N NVI      
Sbjct: 100  VLEIFAGGGGLMLGLEEAGFE-TAAAIEINKHACSTLRTNRP-------NLNVI------ 145

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                        + AE+      N I +     ++D ++GG PCQ FS   +  +     
Sbjct: 146  ----------EGDIAEIVKEGIRNYIGD----EEIDLLSGGYPCQAFSFAGK--KLGLKD 189

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             +  M   +    +  +P+ FL ENVR  VS  KG+T +  L    E+GY V + +L+A 
Sbjct: 190  ARGTMFYWYAQLLNELRPKMFLAENVRGLVSHEKGKTLQGMLDVFDEIGYTVTYKVLKAT 249

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             + V+Q R+R FI                           L+  +++ A R         
Sbjct: 250  NYNVAQKRERIFIIGVRKD---------------------LNAEFKFPAPRDYVP----- 283

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
               +RD + ++P                P   + +R R  M ++                
Sbjct: 284  --VLRDVLQNVP--------------ESPGRQYPERKRQIMELVP--------------- 312

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                  PG  W DLP           V+L    +  +        G+  R+ W+    T 
Sbjct: 313  ------PGGYWRDLP-----------VELQKEYMKGSFYLGGGKTGMARRISWDEPCLTL 355

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
             T P  M +   C HPD+ R  TVRE AR Q FPDS+ F GS+  +++QIGNAVP  LA 
Sbjct: 356  TTAPD-MKQTERC-HPDETRPFTVREYARIQSFPDSWSFEGSMTEQYKQIGNAVPAELAR 413

Query: 1543 ALG 1545
             +G
Sbjct: 414  HVG 416


>gi|334117372|ref|ZP_08491463.1| DNA-cytosine methyltransferase [Microcoleus vaginatus FGP-2]
 gi|333460481|gb|EGK89089.1| DNA-cytosine methyltransferase [Microcoleus vaginatus FGP-2]
          Length = 420

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 189/453 (41%), Gaps = 93/453 (20%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +D+FAG GG++ G +Q+G      ++E +       + N P        C+++ + V +
Sbjct: 11   AVDLFAGAGGMTLGFEQAGFDVLA-SVEIDPIHCATHEFNFPL-------CSILCKDVTQ 62

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
              G        SE  + +A              ++D +  G PCQGFS M + +      
Sbjct: 63   LTG--------SEIRKKSAIGRR----------EIDVVISGSPCQGFSMMGKRDV---DD 101

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             +  +I  F       +P++F++ENV    S    +   + ++S +E GY+V   + +L 
Sbjct: 102  PRNSLIFHFQRLVLELKPKFFVMENVPGIASGEHKELLNILISSFMEAGYKVEENYQVLN 161

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360
            A  +GV Q+RKR F+        LP++P+   +   P +K+      +Y  V   A    
Sbjct: 162  AVHYGVPQARKRLFLIGCKKDYELPKYPQQTTIL--PRIKV----PKRYKKVNLPA---- 211

Query: 1361 FRAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
                TV D IGDLP V   +        I EY     S +   +RG   +  D+      
Sbjct: 212  --VPTVWDAIGDLPEVEKYSELLHRDWVIAEYGKS--STYASIMRGIDGLDDDYSYDREY 267

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPN-TAKRHNQWKGL--FGR 1472
            +  ++ C                    L T   ++    C+    A +H + + +  F +
Sbjct: 268  DRQILSCS-------------------LRTKHSLE----CMERFHAAKHGEKEPISRFYK 304

Query: 1473 LDWEGNFPT----------SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
            L  EG   T          + T P+P+       HP   R +TVRE AR   +PD ++FH
Sbjct: 305  LHPEGVCNTLRAGTDRARGAYTSPRPI-------HPIAPRCITVREAARLHSYPDWFRFH 357

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
             +  H  RQ+GN+VPP LA  +  ++  A+  K
Sbjct: 358  VTKWHGFRQVGNSVPPRLAKVVAAQIISALGVK 390


>gi|254416651|ref|ZP_05030402.1| C-5 cytosine-specific DNA methylase superfamily [Coleofasciculus
            chthonoplastes PCC 7420]
 gi|196176617|gb|EDX71630.1| C-5 cytosine-specific DNA methylase superfamily [Coleofasciculus
            chthonoplastes PCC 7420]
          Length = 428

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 189/456 (41%), Gaps = 95/456 (20%)

Query: 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN-----VI 1176
              +D+FAG GG S G++Q+G      A+E +      +K N P++ +L  +        I
Sbjct: 9    VAIDLFAGVGGFSLGIEQAGFDVAI-AVEKDPIHAAVYKFNFPQTHVLCADVTELTGTHI 67

Query: 1177 LRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFN 1236
             +A+   C   +  V  S+   +                 ++ + GGPPCQGFS M +  
Sbjct: 68   QKALRNWCDRQKRPVRVSDRDRM----------------DINLVFGGPPCQGFSVMGK-- 109

Query: 1237 QSTWSKVQCE----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLA-SLLEMG 1291
                 +  C+    ++  F       QPRYFL+ENV   + + K Q     L       G
Sbjct: 110  -----RQVCDKRNLLVFEFCRLVKELQPRYFLMENVPG-LGWKKYQDLLNRLQWEFNAAG 163

Query: 1292 YQVR--FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQY 1349
            Y++     +L A  FGV Q R+R FI           +P+       P+L+         
Sbjct: 164  YEITQPIQVLNAVNFGVPQQRQRLFILGNQVGVKPLTYPQ-------PQLQ--------- 207

Query: 1350 SAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQ-NDPVSWFQKRIRGNMAVLTD 1408
                     +P    TVRD I DLP + +       E Q +D V     +++   A+   
Sbjct: 208  ---------SPSEFCTVRDAIADLPNLDD-----FPELQTSDWVELTFPQLKLLQALAMP 253

Query: 1409 HISKEMNELNLIRCQKIPKRPGADWHD--LPDEKVKLSTGQVVDLIPWCLPNTAKRHNQW 1466
            ++ K  N ++       P++    W+   L   K        ++     LP   +  ++ 
Sbjct: 254  YVEKLRNIISDPFNFAHPRK----WNPFLLTSSKRTRHNPASIERFNQTLPGQLEAISRL 309

Query: 1467 KGLFGRLDWE----------GNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFP 1516
            +    RLDW+          G    S T P+P+       HP+  R+++VRE AR   FP
Sbjct: 310  Q----RLDWDKPCYTLRAGTGYDRGSYTSPRPI-------HPNYPRVISVREAARLHSFP 358

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
            D ++FHG+  H  RQ+GN+VPP L   LG ++  A+
Sbjct: 359  DWFRFHGTKWHGFRQVGNSVPPRLGRVLGDQIIAAL 394


>gi|409422062|ref|ZP_11259177.1| modification methylase XorII [Pseudomonas sp. HYS]
          Length = 428

 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 173/442 (39%), Gaps = 96/442 (21%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GGLS G +Q+G      A+E +       + N P       NC  I  +V + 
Sbjct: 14   IDLFAGAGGLSLGFEQAGFD-IAAAVEIDPIHCATHEFNFP-------NCTTICASVTDL 65

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
             G             L A + +           +D + GG PCQGFS + +         
Sbjct: 66   SG---------PEIRLRAGIGDK---------DIDVVFGGAPCQGFSMIGK---RALDDS 104

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--FGILEA 1301
            + +++  ++      +P+Y + ENV+        +  +  +A+L E GY V   + +L A
Sbjct: 105  RNQLVFHYVRIVAELKPKYCVFENVKGLTLGKHAEFLKELIAALGEAGYDVTLPYRVLNA 164

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q RKR F+         PE+PE       P+LK                     
Sbjct: 165  ADYGVPQDRKRLFLIGTRRGLNTPEYPE-------PQLK--------------------- 196

Query: 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW-----FQKRIRGNMAVLTDHISKEMNE 1416
              + V + I DLP       + + E     V W     + +R+RG + V  +    E + 
Sbjct: 197  -RVNVGEAISDLPDANT--FEELRENDQVVVQWATHASYARRLRG-LEVDANDFGYERDF 252

Query: 1417 LNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAK-RHNQWKGLFGRL-- 1473
            L  I                  E   LS  + +   P      ++ R     GL   L  
Sbjct: 253  LRDILTSSTRT-----------EHTALSQSRFLATEPGKTEEVSRFRKLPMDGLCNTLRA 301

Query: 1474 ---DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHR 1530
                  G F    T P+P+       HP+  R++TVRE AR   FPD ++FH +  H  R
Sbjct: 302  GTDSARGAF----TSPRPI-------HPNLPRVITVREAARLHSFPDWFRFHTTKWHGFR 350

Query: 1531 QIGNAVPPTLAFALGRKLKEAV 1552
            QIGN+VPP L  A+   +  A+
Sbjct: 351  QIGNSVPPLLGRAIASSVISAM 372


>gi|283956744|ref|ZP_06374220.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
            jejuni 1336]
 gi|283791719|gb|EFC30512.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
            jejuni 1336]
          Length = 330

 Score =  110 bits (275), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 112/427 (26%), Positives = 178/427 (41%), Gaps = 107/427 (25%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            TLD+F+G GG S G  +SG                AF +     L+ I+N N  L    E
Sbjct: 6    TLDLFSGAGGFSLGFLKSG----------------AFNI-----LLSIDN-NPKLSISYE 43

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
            K  D    ++         S  +  I  L      + I GGPPCQGFS   +  +     
Sbjct: 44   KNFDFIKHINRD-----ILSFSDKDIQKLQQKYNFEVIIGGPPCQGFSLAGKIGRKELQD 98

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAG 1302
             + ++ LA+L F    +P+ F++ENV +    NKGQT +  L     + Y+V++ IL   
Sbjct: 99   DRNKLFLAYLKFIKNIKPKIFIMENVASLARHNKGQTLKEILQCFYNINYEVKYEILNTK 158

Query: 1303 AFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFR 1362
             + ++Q+R R FI      ++          F  P+      +N Q S            
Sbjct: 159  DYSIAQNRSRIFIVGTIKKNS----------FIFPK-----KENSQIS------------ 191

Query: 1363 AMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRC 1422
               ++  I DLP + NG                + +I  + A++  H ++ + +++ I  
Sbjct: 192  ---IKKVIDDLPKLKNGE---------------KSKIPNHNAMM--HSNQMLEKMSYI-- 229

Query: 1423 QKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTS 1482
                 + G +   +P E ++  +G +   I +   N+AK                    S
Sbjct: 230  -----KDGGNKEQIPPE-IRPKSGDMRKYIRY---NSAK-------------------PS 261

Query: 1483 ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAF 1542
            IT    M KV   FH  Q+R L+ RE AR Q FPD + F+G+     +QIGNAV P LA 
Sbjct: 262  ITITGDMRKV---FHYSQNRALSARELARIQSFPDDFIFYGNSIDIQQQIGNAVAPLLAE 318

Query: 1543 ALGRKLK 1549
             +  ++K
Sbjct: 319  KIANQVK 325


>gi|312794286|ref|YP_004027209.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312181426|gb|ADQ41596.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
            177R1B]
          Length = 419

 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 191/453 (42%), Gaps = 65/453 (14%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            L  +D+FAG GGL EG +++GI+     +E ++   +  +       +  N    +    
Sbjct: 6    LFAVDLFAGAGGLMEGFRRAGINFIA-HVEKDKYCCQTLQTRLIYHFLRENGEEDLYYKY 64

Query: 1181 MEKCGDAEDCVST--SEAAELAASLDENVINNLPLPGQVDFIN---------------GG 1223
            +      E+ V+    E  +++ ++    IN+  LP  VD IN               GG
Sbjct: 65   LYGEITREEFVNLYPDEFGQISKTIINIEINDKTLPYIVDRINCLMREKGLKNIDLLIGG 124

Query: 1224 PPCQGFS--GMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFR 1281
            PPCQ +S  G  R   +  +  +  +   ++     F+P  F+ ENV   +S   G+ F 
Sbjct: 125  PPCQAYSLVGRARDPYNMENDPRNYLYRYYIRILKKFKPEVFVFENVPGILSAGDGKLFS 184

Query: 1282 LTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKI 1341
                   + GY++ + IL +  F V Q+RKR  +           W +  + F  PE K 
Sbjct: 185  TVQRYFKKAGYEIEYRILNSADFLVLQNRKRVILMG---------WKKGSN-FKYPEFK- 233

Query: 1342 MLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKR-IR 1400
             +  NY+   +                        G G  +  + Y   P  +  K  IR
Sbjct: 234  KIEHNYKVKDLLLDLPPL---------------KPGEGEDRKPLNYIAPPSDYLSKTGIR 278

Query: 1401 GNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTA 1460
             +  V+  H ++    L+L    +I     A  + L  +K+K +       +P  L  T 
Sbjct: 279  QDRDVVIHHRARNHRALDL-EIYRI-----AIEYYLNGKKLKYTD------LPEHL-QTH 325

Query: 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFPD 1517
            +  + +   F  +DWE   P S T    + K G  + HPD  Q R +TVRE AR Q FPD
Sbjct: 326  RNKDSFLDRFKVVDWEA--PCSHTVVSHISKDGHYYIHPDIKQLRSITVREAARIQSFPD 383

Query: 1518 SYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550
            +Y F GS   +  Q+GNAVPP +A+ +  ++K+
Sbjct: 384  NYIFEGSRTQQFIQVGNAVPPLMAYGIAAEIKK 416


>gi|376002264|ref|ZP_09780102.1| DNA (cytosine-5-)-methyltransferase [Arthrospira sp. PCC 8005]
 gi|423067964|ref|ZP_17056754.1| DNA-cytosine methyltransferase [Arthrospira platensis C1]
 gi|375329355|emb|CCE15855.1| DNA (cytosine-5-)-methyltransferase [Arthrospira sp. PCC 8005]
 gi|406710502|gb|EKD05713.1| DNA-cytosine methyltransferase [Arthrospira platensis C1]
          Length = 423

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 179/464 (38%), Gaps = 101/464 (21%)

Query: 1100 CIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159
            C  GE+ L V K+  A        +D+FAGCGG+S GL+ +G      A+E++       
Sbjct: 5    CFFGEN-LTVTKRPIA--------IDLFAGCGGMSLGLEAAGFD-VAVAVEFDAVHCLVH 54

Query: 1160 KLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDF 1219
              N P        C+ I R +           S   +AE+   L     +      QVD 
Sbjct: 55   HFNFP-------YCHTICRDI-----------SKVTSAEILEQLQLKYQDT-----QVDL 91

Query: 1220 INGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279
            I GGPPCQGFS + +         +  ++  +L      QP+YF+ ENV    +    + 
Sbjct: 92   IAGGPPCQGFSHIGK---RQLDDPRNSLVFEYLRMIAEIQPKYFIFENVPGIATGKHKRF 148

Query: 1280 FRLTLASLLEMGYQVR--FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAP 1337
                +     +GYQ++    IL+A  +G  Q RKR  +  +     + E+P         
Sbjct: 149  LNELITEFEAIGYQIQKPIKILDASEYGAPQKRKRLILIGSRFDVKIAEYP--------- 199

Query: 1338 ELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND------- 1390
                         A   +     ++A++  + I        G S   +EY+ D       
Sbjct: 200  -------------ATNKSEMFTVYQAISDLEKIDHFTNYDPGISPAFLEYEGDRKKYSLV 246

Query: 1391 PVSWFQK-RIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVV 1449
            P   F     R     +  H+      L++ R  + P  PG                +  
Sbjct: 247  PSDSFSLCHKRTIEPTVYGHVGSVHTPLSIARFAETP--PGTVE----------PKSRFF 294

Query: 1450 DLIPWCLPNTAKR-HNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRE 1508
             L P  L NT +   N  KG +             T P+P+       H    R +T+RE
Sbjct: 295  KLSPTGLCNTLRAGTNSDKGAY-------------TAPRPI-------HYSIPRCITIRE 334

Query: 1509 CARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             AR   FPD +QFH +I H  R+IGNAV P LA  LG  + +A+
Sbjct: 335  AARLHTFPDWFQFHRTIWHGFREIGNAVIPILAKQLGGSVIDAL 378


>gi|218245850|ref|YP_002371221.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058898|ref|YP_003136786.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218166328|gb|ACK65065.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256589064|gb|ACU99950.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 418

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 185/435 (42%), Gaps = 74/435 (17%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG++ G +Q+G         ++  A       H     L+++ N    +++  
Sbjct: 9    VDLFAGAGGMTLGFEQAG---------FDVLASVEIDPIH----CLVHHYNFPFWSII-- 53

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKV 1243
            C D +  ++  E  +L+       + N P    +D + GGPPCQGFS M +         
Sbjct: 54   CRDIQT-ITGQEIRQLSK------VGNHP----IDVVFGGPPCQGFSLMGK---RVLEDE 99

Query: 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILEA 1301
            +  +I  F+      QP+YF+LENV      +  Q  +         GY+V   + IL A
Sbjct: 100  RNALIAHFIRLVLELQPKYFVLENVPGMAIGSHQQLLQEIFDKFSYHGYEVETNYQILNA 159

Query: 1302 GAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPF 1361
              +GV Q+R+R F+        LP +P+             +S N+   +  +     P 
Sbjct: 160  ANYGVPQNRERLFLLGCQKGLILPNYPQ------------AISYNFTNKSEPNNQLNLP- 206

Query: 1362 RAMTVRDTIGDLPAVGNGASK-----TIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNE 1416
            +  TV + I DLP V N          I +Y+    S + K++R  M +  D+      +
Sbjct: 207  KCPTVWEAIKDLPEVENYPELEKQDWVIADYKKP--SNYGKQLRCLMDIEDDYSYSRRYK 264

Query: 1417 LNLIRCQKIPKRPGAD---WHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRL 1473
              L+      K        +   P  K + S  + + L P  L NT +         G  
Sbjct: 265  NRLLTSSMRTKHSETSRERFAKTPQGKTE-SVSRFLKLHPKGLCNTLRA--------GTP 315

Query: 1474 DWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIG 1533
               G    + T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQ+G
Sbjct: 316  SNRG----AHTAPRPI-------HPITPRCITVREAARLHSYPDWFRFHVTKWHGFRQVG 364

Query: 1534 NAVPPTLAFALGRKL 1548
            N+VPP LA A+ R++
Sbjct: 365  NSVPPLLAKAVAREI 379


>gi|86141746|ref|ZP_01060270.1| DNA-cytosine methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831309|gb|EAQ49765.1| DNA-cytosine methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 410

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 178/444 (40%), Gaps = 72/444 (16%)

Query: 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF-------KLNHPESLMLINN 1172
             L  +D+F+G GGLSEG   +G       +E +  A E         KL   + L   + 
Sbjct: 3    QLNFIDLFSGAGGLSEGFINAGFEPIA-HVEIDAKACETLETRLIYHKLKSEDKLK--DY 59

Query: 1173 CNVILRAVMEKCGDAEDCVSTSEAAELAASL--DENV-----INNLPLPGQVDFINGGPP 1225
               IL  +       ++  ST   + +  ++  D N      I+NL     VD I GGPP
Sbjct: 60   YKYILGDISRSDFLEKNSSSTISNSVINTAIGGDNNKVIFAKIDNLVKGKPVDLIVGGPP 119

Query: 1226 CQGFSGMNRFNQSTWSKVQCEMIL--AFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283
            CQ +S + R       K      L   +  F   +QP+ F+ ENV   ++   G  F+  
Sbjct: 120  CQAYSLVGRSRDKNKMKDDPRNFLYKEYAKFLKKYQPKVFVFENVMGLITAESGSYFKNM 179

Query: 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIML 1343
             A    +GY++ + I ++  FGV Q R+R  +           W +              
Sbjct: 180  QAYFKRIGYELDYTIQKSEHFGVLQKRRRIILIG---------WQKGF------------ 218

Query: 1344 SDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQK-RIRGN 1402
              ++QY +             T+   + DL  +  G    + +Y      + +K  +R  
Sbjct: 219  --SFQYPSFTKVK-----EKYTLDQILSDLKKLKPGEQNNVTKYTGQITPYLEKYELRNG 271

Query: 1403 MAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKR 1462
            +  +T HI++  NE +L    KI K     W     E++K             LP+  K 
Sbjct: 272  VDFVTQHIARPHNERDL----KIYKIAINKWLK-ESERLKYPD----------LPSKLKT 316

Query: 1463 HNQWKGLFGR---LDWEGNFPTSITDPQPMGKVGMCF-HPD--QDRILTVRECARSQGFP 1516
            H   K    R   +D +G   T +     + K G  + +PD  Q R ++VRE AR Q FP
Sbjct: 317  HKNEKAFVDRFKVVDIKGLSHTMVAH---IAKDGHHYIYPDTKQVRSISVREAARIQSFP 373

Query: 1517 DSYQFHGSIQHKHRQIGNAVPPTL 1540
            D Y F G      RQIGNAVPP +
Sbjct: 374  DDYYFEGGRTAAFRQIGNAVPPLM 397


>gi|418226502|ref|ZP_12853126.1| DNA-cytosine methyltransferase family protein [Streptococcus
            pneumoniae NP112]
 gi|419467802|ref|ZP_14007680.1| DNA (cytosine-5-)-methyltransferase family protein [Streptococcus
            pneumoniae GA05248]
 gi|419517729|ref|ZP_14057341.1| DNA (cytosine-5-)-methyltransferase family protein [Streptococcus
            pneumoniae GA02506]
 gi|353879142|gb|EHE58969.1| DNA-cytosine methyltransferase family protein [Streptococcus
            pneumoniae NP112]
 gi|379542224|gb|EHZ07382.1| DNA (cytosine-5-)-methyltransferase family protein [Streptococcus
            pneumoniae GA05248]
 gi|379637379|gb|EIA01935.1| DNA (cytosine-5-)-methyltransferase family protein [Streptococcus
            pneumoniae GA02506]
          Length = 289

 Score =  110 bits (274), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 149/343 (43%), Gaps = 82/343 (23%)

Query: 1215 GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF 1274
            G++D ++GG PCQ FS   +  +      +  +   +  F +  QP+ FL ENV+   S 
Sbjct: 25   GELDLLSGGAPCQSFSYAGK--RLGLEDTRGTLFYHYAVFLEKLQPKMFLFENVKCLTSH 82

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS---PHDTLPEWPEPM 1331
            +KG+T+   L      GY V+  +L A  +GV+Q R+R  +          T  E+PE  
Sbjct: 83   DKGKTYETILNVFESEGYTVQSKVLNAWDYGVAQKRERMIMVGICNDLASRTSFEYPE-- 140

Query: 1332 HVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDP 1391
                        + NY+                 +RD + D P      S   M+Y    
Sbjct: 141  ------------AHNYK---------------PVLRDVLMDCP------SSQGMQYSE-- 165

Query: 1392 VSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDL 1451
                QKR              ++ EL       +P  PG  W D+P+           D+
Sbjct: 166  ----QKR--------------KIFEL-------VP--PGGYWRDIPE-----------DI 187

Query: 1452 IPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECAR 1511
                + +T        G+  R+  +    T +T P    +   C HP + R  TVRE AR
Sbjct: 188  AKEYMKSTWDMGGGRTGILRRMSLDEPSLTVLTSPT-QKQTERC-HPLEARPFTVRENAR 245

Query: 1512 SQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554
             Q FPDS++F GSI ++++Q+GNAVP  LA+ +G K+KE++E+
Sbjct: 246  IQSFPDSWEFQGSIGNQYKQVGNAVPVNLAYEVGVKIKESLEA 288


>gi|434387116|ref|YP_007097727.1| DNA-methyltransferase Dcm [Chamaesiphon minutus PCC 6605]
 gi|428018106|gb|AFY94200.1| DNA-methyltransferase Dcm [Chamaesiphon minutus PCC 6605]
          Length = 426

 Score =  110 bits (274), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 180/446 (40%), Gaps = 92/446 (20%)

Query: 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILR 1178
            N    +D+FAG GG+S G +Q+G      A+E +       + N P S         I  
Sbjct: 2    NRPIGIDLFAGAGGMSLGFEQAGFDVVA-AVEIDPIHCATHEYNFPLS-------ATICA 53

Query: 1179 AVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS 1238
            +V++  GD              A LD+           +D + GG PCQGFS M +    
Sbjct: 54   SVIDLTGDE---------IRSRAKLDDK---------DIDVVFGGAPCQGFSLMGK---R 92

Query: 1239 TWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVR--F 1296
             +   + +++  ++       P+Y + ENV+        Q     + +L + GY V   +
Sbjct: 93   VFEDPRNQLVFHYVRLVRELNPKYCVFENVKGLTLGKHAQFLDELITALGDAGYTVLTPY 152

Query: 1297 GILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356
             +L A  +GV Q R+R F+  A     LPE+P+P                          
Sbjct: 153  KVLNAADYGVPQDRRRLFLIGARKDMKLPEYPKPNQ------------------------ 188

Query: 1357 NGAPFRAMTVRDTIGDLPAVGN----GASKTIMEYQNDPVSWFQKRIRGNMAVLTDH--- 1409
                   +TV + IGDLP          + TI  YQ +  S + +++RG      D+   
Sbjct: 189  -----DRVTVLEAIGDLPDADRFDDLWGTDTI-SYQWETKSTYARKLRGFERDPDDYSYP 242

Query: 1410 --ISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK 1467
               S EM   +L R Q            LP +   +S  +   L P  + NT +      
Sbjct: 243  RKFSPEMLTCSL-RTQHTQSSRSRFEATLPGKTESIS--RFRKLEPNGICNTLRA----- 294

Query: 1468 GLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQH 1527
               G     G    + T P+P+       HP   R++TVRE AR   +PD ++ H +  H
Sbjct: 295  ---GTDSARG----AHTSPRPI-------HPWFPRVITVREAARLHSYPDWFRLHSTKWH 340

Query: 1528 KHRQIGNAVPPTLAFALGRKLKEAVE 1553
              RQIGN+VPP LA A+  +L +A E
Sbjct: 341  GCRQIGNSVPPLLARAVASELIKAQE 366


>gi|381179187|ref|ZP_09888045.1| DNA-cytosine methyltransferase [Treponema saccharophilum DSM 2985]
 gi|380768862|gb|EIC02843.1| DNA-cytosine methyltransferase [Treponema saccharophilum DSM 2985]
          Length = 477

 Score =  110 bits (274), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 188/461 (40%), Gaps = 115/461 (24%)

Query: 1115 ASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCN 1174
             S+   +  L  F+G  GL  G++++GI     A E E  A +   LN P ++ LI + N
Sbjct: 69   TSELPDIVALSFFSGAMGLDYGIEKAGIHPL-LASEIEPNARKTILLNRP-NIGLIGDIN 126

Query: 1175 VILRAVMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234
                  + K                 A++ EN         ++D + GGPPCQ FS   +
Sbjct: 127  NYSAKDIRKF----------------ANISEN--------QEIDLVIGGPPCQAFSTAGQ 162

Query: 1235 FNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSF-------------------- 1274
              +  +   +  + L F+      +P++ ++ENVR  +S                     
Sbjct: 163  --RKGFQDKRGNVFLTFIDRILELRPKFAVIENVRGILSAPFECEEMEKRFGFAPKTPEE 220

Query: 1275 NKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVF 1334
             KG      L  L E GY V F +  A  +G  Q R+R   + +     +P        +
Sbjct: 221  KKGGALLYILHKLEEGGYTVTFNLYNAANYGAPQKRERVVFFCSRDGQKVP--------Y 272

Query: 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSW 1394
             +P        N ++        G P +  TVR+ I DL        +  M++    + +
Sbjct: 273  LSPT-------NDEFGNF-----GLP-KWRTVREVISDL----KEDEQKAMKFPEKRLKY 315

Query: 1395 FQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPW 1454
            F+    G       H+ +E+                   ++   EK+KL  G+       
Sbjct: 316  FKMLKAGQYW---KHLPQEIQ------------------YEAMGEKLKLGGGKT------ 348

Query: 1455 CLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQG 1514
                         G F R+ W+   PT +TDP  M    +C HP++DR L+++E AR Q 
Sbjct: 349  -------------GFFRRVGWDEPSPTLVTDPT-MPATDLC-HPEKDRPLSIQEYARIQE 393

Query: 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555
            FPD ++F G ++  ++QIGNAVP +L  A+G+++ + V ++
Sbjct: 394  FPDDWKFFGEMKDVYKQIGNAVPISLGCAIGKQIVKLVTNQ 434


>gi|440683449|ref|YP_007158244.1| DNA-cytosine methyltransferase [Anabaena cylindrica PCC 7122]
 gi|428680568|gb|AFZ59334.1| DNA-cytosine methyltransferase [Anabaena cylindrica PCC 7122]
          Length = 449

 Score =  110 bits (274), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 102/450 (22%), Positives = 193/450 (42%), Gaps = 96/450 (21%)

Query: 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
             +++FAG GG++ G +Q+G      A+E +       + N P          +  ++V+E
Sbjct: 33   AVELFAGAGGMTLGFEQAGFDVLA-AVEIDPVHCATHEFNFPF-------WQIFCKSVVE 84

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                    +S  E  +L+   ++          ++D + GGPPCQGFS + +        
Sbjct: 85   --------ISGEEIRKLSKIKNQ----------EIDVLFGGPPCQGFSLIGK---RLLDD 123

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL-TLASLLEMGYQVR--FGIL 1299
             +  ++  ++      QP++ +LENV+  ++  K + F L  +++   + Y+V   + +L
Sbjct: 124  PRNSLVFHYIRLVLELQPKFVVLENVKG-MTVGKHREFILEVISAFAAINYKVYQDYQVL 182

Query: 1300 EAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359
             A  +GV Q+R+R F+ A      LP +P+P+                 Y   +   N  
Sbjct: 183  NAANYGVPQNRERLFLLACRQDLDLPNYPQPITT---------------YIKKKKAINNQ 227

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPV-------SWFQKRIRGNMAVLTDHISK 1412
                 +V+  + DLP + N        Y+ D +       S + +R+ G  +   ++  K
Sbjct: 228  LLLTPSVKKALQDLPIIENYPEL----YEQDWILADFGKSSRYVQRLNGFNSKFNNYSYK 283

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGR 1472
             + +            P      L  +  ++S  +  + +P  +   ++        F +
Sbjct: 284  RIYD------------PKILTSSLRTKHTEVSIQRFAETLPGKIEPISR--------FYK 323

Query: 1473 LDWEGNFPT----------SITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFH 1522
            LD++G   T          + T P+P+       HP   R +TVRE AR   +PD ++FH
Sbjct: 324  LDYKGICNTLRAGTASNKGAFTSPRPI-------HPFIPRCITVREAARLHSYPDWFRFH 376

Query: 1523 GSIQHKHRQIGNAVPPTLAFALGRKLKEAV 1552
             +  H  RQIGN+VPP LA A+  ++ +A+
Sbjct: 377  VTKWHGFRQIGNSVPPLLAKAIASEIIKAL 406


>gi|448532943|ref|ZP_21621363.1| DNA-cytosine methyltransferase [Halorubrum hochstenium ATCC 700873]
 gi|445706177|gb|ELZ58062.1| DNA-cytosine methyltransferase [Halorubrum hochstenium ATCC 700873]
          Length = 396

 Score =  109 bits (273), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 174/441 (39%), Gaps = 118/441 (26%)

Query: 1127 FAGCGGLSEGLQQSG----ISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVME 1182
            F+GCGGL  G +++G    + S +W     EPA E ++ N P+   +             
Sbjct: 32   FSGCGGLDLGFERAGFDVALGSDQW-----EPAAETYRRNFPDVEFV------------- 73

Query: 1183 KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK 1242
                 E+ V   +A  +  S++    +    PG +D + GGPPCQGFS +N   Q    +
Sbjct: 74   -----EEDVRELDAPAIRESVERAGYD----PGGIDVVIGGPPCQGFSRLNN-EQIELDE 123

Query: 1243 VQCE----MILAFLSFADYFQPRYFLLENVRNFVSFNKGQ---TFRLTLASLLEMGYQVR 1295
            ++ +    +   FL      +P+  L+ENVR+ ++           L +      GY+  
Sbjct: 124  MEKDRRNTLFEEFLRVVSVLEPQLVLMENVRDLINRQTSDDRYVKDLIVDEFAAHGYKCE 183

Query: 1296 FGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355
            + +LEA  +GV Q R+R F +  +  D    +PEP      PE                T
Sbjct: 184  YRVLEAEQYGVPQKRRRIF-FMGTDRDVPIRFPEP----TTPE------------GSWRT 226

Query: 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMN 1415
            A  A      + D   DLP          M Y N                          
Sbjct: 227  AGEA------LADATDDLPN---------MTYAN------------------------TQ 247

Query: 1416 ELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQV------VDLIPWCLPNTAKRHNQWKGL 1469
            E  L R + +P  PG  + DLPD   +L T +        D  P   P   KR+  +   
Sbjct: 248  EKTLERIRHVP--PGGYYRDLPD---RLKTKKYRCDCEDTDTCPH-EPEIVKRYGTY--- 298

Query: 1470 FGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKH 1529
              RLD E        +P       +  HP +DR LT RE AR Q FPD + F G+     
Sbjct: 299  LRRLDPE--------EPSLTVSTNVFIHPSEDRYLTPREMARLQTFPDEFAFEGTKTDVM 350

Query: 1530 RQIGNAVPPTLAFALGRKLKE 1550
            +QIGNAVP  L   L  +++E
Sbjct: 351  KQIGNAVPVRLGEELAHQIRE 371


>gi|375261651|ref|YP_005020821.1| modification methylase [Klebsiella oxytoca KCTC 1686]
 gi|365911129|gb|AEX06582.1| modification methylase [Klebsiella oxytoca KCTC 1686]
          Length = 352

 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 175/442 (39%), Gaps = 101/442 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAV 1180
            +  +D F GCGG S+G + +G       I+++E A  ++K N P +  + ++    +R V
Sbjct: 1    MRVIDFFCGCGGASKGFELAGFE-VALGIDFDENAASSYKANFPNTKFIRDD----IRNV 55

Query: 1181 MEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTW 1240
              K  D    V   +++EL                         PCQ FS  N+   S  
Sbjct: 56   --KVKDVAKLVPDLKSSELV-------------------FCACAPCQPFSSQNKIRNS-- 92

Query: 1241 SKVQCEMILAFLSFADYFQPRYFLLENVRNF--VSFNKGQTFRLTLASLLEMGYQVRFGI 1298
            S  +  ++     F   F+P +  +ENV     +   +   F   L  +   GYQ  + +
Sbjct: 93   SDKRRTLLGETKRFIRAFRPAFIFIENVPGIQSIKIEENGPFSDFLNFISRFGYQYDYKV 152

Query: 1299 LEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358
            + +  +GV Q RKR  + A                         L+D   + +     + 
Sbjct: 153  VSSEFYGVPQQRKRLVVLA------------------------RLNDKPIFPSYSHGVDN 188

Query: 1359 APFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELN 1418
             PF   TVRD IG LP +  G S +     ND +                H +  +  +N
Sbjct: 189  IPF--ATVRDYIGSLPKLQAGESDS-----NDLL----------------HAAAVIQPIN 225

Query: 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478
            + R Q  P+  G D  D PDE              W   N  ++++    ++GR+ W+  
Sbjct: 226  IKRLQHTPE--GGDRRDWPDEL-------------WL--NCHRKYDGHTDVYGRMSWDKP 268

Query: 1479 FPTSITDPQPM--GKVGMCFHPD--QDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGN 1534
              T  T    +  G+ G   HPD  Q+R +T RE A  Q FP  + F GS   K +QIGN
Sbjct: 269  CKTLTTKCTSISNGRFG---HPDTTQNRAITFREAACLQTFPKDFHFLGSNVSKSKQIGN 325

Query: 1535 AVPPTLAFALGRKLKEAVESKR 1556
            AVP  LA  +   + E  +S R
Sbjct: 326  AVPVLLAQRVAESILEQAKSNR 347


>gi|307153788|ref|YP_003889172.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306984016|gb|ADN15897.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 424

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 185/438 (42%), Gaps = 70/438 (15%)

Query: 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEK 1183
            +D+FAG GG+S G +Q+G      ++E +       + N P S M       I R+V E 
Sbjct: 12   VDLFAGAGGMSLGFEQAGFDVLA-SVEIDPIHCATHEYNFPFSTM-------ICRSVTE- 62

Query: 1184 CGDAEDCVSTSEAAELAASLDENVINNLPLPGQ-VDFINGGPPCQGFSGMNRFNQSTWSK 1242
                   ++  E   L+           P+  Q +D + GGPPCQGFS + +        
Sbjct: 63   -------ITAREIRNLS-----------PIGTQDIDVVFGGPPCQGFSLIGK---RLLDD 101

Query: 1243 VQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQV--RFGILE 1300
             + ++I  FL       P+YF+LENV         +     +    E  Y V     IL 
Sbjct: 102  PRNDLIYHFLRLVLELNPKYFILENVPGMALGKHKKLIEEIINKFQENNYNVEENIKILN 161

Query: 1301 AGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQ-YSAVRSTANGA 1359
            A  +GV Q+R+R F+  +     LP++PEP+    AP     LS     + A++      
Sbjct: 162  AAHYGVPQNRERLFLLGSQKGLVLPQYPEPI---TAPNPFQNLSKTPTVWEALQDLPEVN 218

Query: 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNL 1419
             +  +  RD +       +  ++ + E   +    +Q++   +M VLT  +  E    ++
Sbjct: 219  HYPELETRDWVAAEWGNPSDYARKLREMALENDYLYQRQY--DMKVLTSSLRTEHTAKSI 276

Query: 1420 IRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNF 1479
             R    P  PG         K++    +   L P  L NT +         G     G +
Sbjct: 277  ERFAMTP--PG---------KIE-PISRFYKLSPDGLCNTLRA--------GTPSNRGAY 316

Query: 1480 PTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPT 1539
                T P+P+       HP   R +TVRE AR   +PD ++FH +  H  RQIGN+VPP 
Sbjct: 317  ----TSPRPI-------HPFTPRCITVREAARLHSYPDWFRFHVTKWHGFRQIGNSVPPL 365

Query: 1540 LAFALGRKLKEAVESKRS 1557
            LA A+  ++ + +  + S
Sbjct: 366  LAKAVALEIMKVLRKEIS 383


>gi|326772743|ref|ZP_08232027.1| modification methylase XorII [Actinomyces viscosus C505]
 gi|326637375|gb|EGE38277.1| modification methylase XorII [Actinomyces viscosus C505]
          Length = 364

 Score =  109 bits (272), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 186/440 (42%), Gaps = 97/440 (22%)

Query: 1121 LATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRA 1179
            +  LD+FAG GGL+ G    S    +  A+E +  A  +++   P++             
Sbjct: 6    IRVLDLFAGAGGLTAGFHTASSRFRSIAAVEMDPEAAASYRATFPKT------------- 52

Query: 1180 VMEKCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239
                              E+ A   ++ +    +P  VD + GGPPCQGFS + + +   
Sbjct: 53   ------------------EVYAGAIQDWLAEGTIPTGVDVVVGGPPCQGFSTLGKRDAED 94

Query: 1240 WSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLAS-----LLEMGYQV 1294
                  E     +  A   +P+YF++ENV    +F K   +R  LA+      LE  Y  
Sbjct: 95   ARNRLWEQYAQVIQRA---RPKYFVVENVP---AFGKSPQYRDFLAATGPGEFLE-DYSF 147

Query: 1295 RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRS 1354
             F +L A  +G  Q+R+RA +        +P +PEP H   +P+                
Sbjct: 148  DFRVLNAADYGAPQARRRAVLIGHRYDMAVPGFPEPTH---SPD---------------G 189

Query: 1355 TANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWF--QKRIRGNMAVLTDHISK 1412
              +  P+R  TVR T+  +PA      +  M+ + D +      +R+ G  +    H+S+
Sbjct: 190  GGDLPPYR--TVRQTLLGVPA------QPDMDERFDQLRTRVGSRRVPGAFSPRELHVSR 241

Query: 1413 EMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWC-LPNTAKRHNQWKGLFG 1471
              +  +  R   IP+  G +  DLPD           DL   C L +T+   +    + G
Sbjct: 242  GYSPKSRERFAAIPE--GGNRADLPD-----------DLKAPCWLRHTSGSMD----VMG 284

Query: 1472 RLDWEG---NFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHK 1528
            RL W+       T    P+     G   HP ++R +T  E A  QGFPD+++F GS    
Sbjct: 285  RLHWDRPSVTIRTEFFKPEK----GRYLHPVENRAITHYEAALLQGFPDTHRFIGSRTSI 340

Query: 1529 HRQIGNAVPPTLAFALGRKL 1548
             RQIGNAVP  L  A+ R++
Sbjct: 341  ARQIGNAVPIPLGAAIARQV 360


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,089,655,402
Number of Sequences: 23463169
Number of extensions: 1118057934
Number of successful extensions: 4177666
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3782
Number of HSP's successfully gapped in prelim test: 1896
Number of HSP's that attempted gapping in prelim test: 4144843
Number of HSP's gapped (non-prelim): 23340
length of query: 1558
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1402
effective length of database: 8,698,941,003
effective search space: 12195915286206
effective search space used: 12195915286206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 84 (37.0 bits)