Query 000407
Match_columns 1558
No_of_seqs 454 out of 2081
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 100.0 4E-57 8.6E-62 530.7 17.4 329 1121-1550 1-335 (335)
2 TIGR00675 dcm DNA-methyltransf 100.0 4.1E-56 8.9E-61 521.8 23.7 308 1123-1548 1-315 (315)
3 cd00315 Cyt_C5_DNA_methylase C 100.0 6E-54 1.3E-58 494.8 25.4 272 1121-1549 1-274 (275)
4 COG0270 Dcm Site-specific DNA 100.0 5.3E-54 1.2E-58 506.8 23.6 323 1119-1555 2-327 (328)
5 PRK10458 DNA cytosine methylas 100.0 3.4E-49 7.4E-54 478.9 27.7 344 1117-1554 85-458 (467)
6 cd04708 BAH_plantDCM_II BAH, o 100.0 1E-45 2.2E-50 397.8 15.2 201 930-1133 1-202 (202)
7 cd04760 BAH_Dnmt1_I BAH, or Br 100.0 1.3E-32 2.9E-37 276.4 10.4 122 761-893 1-124 (124)
8 PF12047 DNMT1-RFD: Cytosine s 100.0 1.8E-31 3.9E-36 280.5 11.6 144 417-571 2-146 (146)
9 PF12047 DNMT1-RFD: Cytosine s 100.0 6.1E-30 1.3E-34 269.0 8.4 136 107-243 1-146 (146)
10 cd04712 BAH_DCM_I BAH, or Brom 100.0 3.2E-28 7E-33 249.9 13.1 115 760-897 2-130 (130)
11 cd04711 BAH_Dnmt1_II BAH, or B 99.9 1.3E-26 2.8E-31 233.4 8.7 122 955-1076 10-137 (137)
12 cd04716 BAH_plantDCM_I BAH, or 99.9 4.9E-26 1.1E-30 230.7 12.6 119 761-897 1-122 (122)
13 KOG0919 C-5 cytosine-specific 99.9 1.2E-25 2.6E-30 241.8 8.8 164 1119-1318 2-168 (338)
14 cd04710 BAH_fungalPHD BAH, or 99.9 2.7E-24 5.8E-29 221.9 12.5 124 930-1072 5-134 (135)
15 cd04709 BAH_MTA BAH, or Bromo 99.9 7.6E-22 1.6E-26 209.3 11.5 125 934-1082 1-147 (164)
16 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 5.9E-22 1.3E-26 202.0 10.2 117 761-892 1-119 (121)
17 PF01426 BAH: BAH domain; Int 99.9 1.7E-21 3.6E-26 197.3 10.5 117 762-896 1-119 (119)
18 cd04713 BAH_plant_3 BAH, or Br 99.8 5.8E-21 1.3E-25 200.5 14.1 129 749-898 6-139 (146)
19 cd04717 BAH_polybromo BAH, or 99.8 5.5E-21 1.2E-25 195.1 10.9 118 761-896 1-120 (121)
20 cd04370 BAH BAH, or Bromo Adja 99.8 7.2E-21 1.6E-25 192.9 10.8 118 761-895 1-122 (123)
21 smart00439 BAH Bromo adjacent 99.8 1.4E-20 3.1E-25 190.5 11.4 117 763-896 1-120 (120)
22 cd04713 BAH_plant_3 BAH, or Br 99.8 4.9E-20 1.1E-24 193.6 12.4 125 925-1074 9-136 (146)
23 cd04716 BAH_plantDCM_I BAH, or 99.8 5.3E-20 1.1E-24 186.9 12.1 119 934-1076 1-122 (122)
24 cd04715 BAH_Orc1p_like BAH, or 99.8 9.8E-20 2.1E-24 192.7 12.9 109 737-847 3-122 (159)
25 PF01426 BAH: BAH domain; Int 99.8 1E-19 2.2E-24 184.2 11.3 118 935-1075 1-119 (119)
26 cd04717 BAH_polybromo BAH, or 99.8 1.4E-19 3E-24 184.8 10.5 118 934-1074 1-119 (121)
27 cd04714 BAH_BAHCC1 BAH, or Bro 99.8 4.2E-19 9E-24 181.1 9.8 114 934-1070 1-118 (121)
28 cd04710 BAH_fungalPHD BAH, or 99.8 1.1E-18 2.3E-23 180.5 11.4 119 757-894 5-135 (135)
29 smart00439 BAH Bromo adjacent 99.8 1.7E-18 3.6E-23 175.5 12.1 117 936-1075 1-120 (120)
30 cd04370 BAH BAH, or Bromo Adja 99.8 1.5E-18 3.2E-23 176.0 10.5 120 934-1074 1-122 (123)
31 cd04721 BAH_plant_1 BAH, or Br 99.7 1.3E-17 2.8E-22 171.8 9.0 113 758-888 2-117 (130)
32 cd04709 BAH_MTA BAH, or Bromo 99.7 3E-17 6.5E-22 174.4 10.9 114 762-895 2-139 (164)
33 cd04708 BAH_plantDCM_II BAH, o 99.7 4.4E-17 9.5E-22 176.8 11.2 123 758-899 2-149 (202)
34 cd04721 BAH_plant_1 BAH, or Br 99.6 3E-16 6.4E-21 161.8 9.6 114 930-1068 1-118 (130)
35 cd04718 BAH_plant_2 BAH, or Br 99.6 2.1E-17 4.5E-22 170.3 -0.0 94 780-895 52-147 (148)
36 cd04718 BAH_plant_2 BAH, or Br 99.6 5.9E-17 1.3E-21 167.0 3.0 141 893-1074 7-147 (148)
37 cd04715 BAH_Orc1p_like BAH, or 99.6 5E-15 1.1E-19 157.2 10.3 118 928-1070 21-150 (159)
38 cd04712 BAH_DCM_I BAH, or Brom 99.6 2E-14 4.3E-19 148.3 13.1 124 933-1075 2-129 (130)
39 cd04719 BAH_Orc1p_animal BAH, 99.5 5.1E-14 1.1E-18 144.1 7.2 85 762-847 2-98 (128)
40 cd04760 BAH_Dnmt1_I BAH, or Br 99.4 3.5E-13 7.6E-18 136.6 10.5 113 934-1071 1-123 (124)
41 cd04720 BAH_Orc1p_Yeast BAH, o 99.4 6.5E-13 1.4E-17 144.3 11.8 117 760-895 49-177 (179)
42 cd04720 BAH_Orc1p_Yeast BAH, o 99.4 1.1E-12 2.3E-17 142.6 11.4 117 933-1072 49-175 (179)
43 cd04711 BAH_Dnmt1_II BAH, or B 99.4 2.1E-12 4.6E-17 131.2 9.7 113 768-897 14-137 (137)
44 KOG1886 BAH domain proteins [T 99.3 1.7E-12 3.7E-17 154.6 7.5 139 738-896 19-169 (464)
45 cd04719 BAH_Orc1p_animal BAH, 99.3 1.2E-11 2.5E-16 126.9 9.9 113 935-1068 2-122 (128)
46 KOG1827 Chromatin remodeling c 99.2 5.5E-12 1.2E-16 155.4 6.6 125 757-899 184-310 (629)
47 KOG1886 BAH domain proteins [T 99.0 6.2E-10 1.3E-14 133.1 7.1 124 928-1074 41-168 (464)
48 KOG1827 Chromatin remodeling c 98.9 9.7E-10 2.1E-14 135.9 5.6 122 930-1074 184-306 (629)
49 KOG3554 Histone deacetylase co 98.8 4.5E-10 9.8E-15 130.4 -2.4 121 936-1080 5-169 (693)
50 KOG3554 Histone deacetylase co 96.2 0.00093 2E-08 79.2 -0.9 111 762-893 4-161 (693)
51 PF09445 Methyltransf_15: RNA 95.6 0.017 3.8E-07 62.5 5.7 39 1122-1162 2-40 (163)
52 PF13659 Methyltransf_26: Meth 95.6 0.022 4.8E-07 57.2 5.9 45 1121-1166 2-46 (117)
53 PF03602 Cons_hypoth95: Conser 95.5 0.03 6.6E-07 61.9 7.0 45 1118-1163 41-85 (183)
54 PRK11783 rlmL 23S rRNA m(2)G24 95.4 0.21 4.5E-06 66.3 15.8 157 1121-1317 540-700 (702)
55 TIGR00479 rumA 23S rRNA (uraci 95.2 0.12 2.5E-06 64.7 11.9 134 1121-1310 294-428 (431)
56 TIGR02085 meth_trns_rumB 23S r 95.1 0.097 2.1E-06 64.2 10.6 41 1121-1163 235-275 (374)
57 TIGR03704 PrmC_rel_meth putati 94.5 0.056 1.2E-06 62.7 6.0 139 1120-1298 87-239 (251)
58 PRK13168 rumA 23S rRNA m(5)U19 94.3 0.18 3.9E-06 63.3 10.3 123 1120-1296 298-421 (443)
59 COG0742 N6-adenine-specific me 94.3 0.1 2.2E-06 57.7 7.1 45 1118-1163 42-86 (187)
60 COG2263 Predicted RNA methylas 94.3 0.24 5.1E-06 54.7 9.7 120 1121-1297 47-166 (198)
61 PRK03522 rumB 23S rRNA methylu 94.2 0.3 6.6E-06 58.5 11.4 42 1120-1163 174-215 (315)
62 PHA03412 putative methyltransf 94.1 0.096 2.1E-06 60.0 6.5 49 1120-1169 50-102 (241)
63 PRK05031 tRNA (uracil-5-)-meth 93.9 0.36 7.9E-06 59.1 11.5 40 1122-1163 209-248 (362)
64 COG2265 TrmA SAM-dependent met 93.9 0.27 5.9E-06 61.3 10.5 129 1119-1300 293-422 (432)
65 TIGR00095 RNA methyltransferas 93.7 0.083 1.8E-06 58.7 5.1 43 1120-1163 50-92 (189)
66 PHA03411 putative methyltransf 93.5 0.13 2.9E-06 60.1 6.5 47 1121-1169 66-114 (279)
67 PF05175 MTS: Methyltransferas 93.4 0.11 2.4E-06 56.6 5.4 45 1119-1163 31-75 (170)
68 PRK10909 rsmD 16S rRNA m(2)G96 93.2 0.21 4.5E-06 56.1 7.2 43 1120-1163 54-96 (199)
69 TIGR00537 hemK_rel_arch HemK-r 93.0 0.61 1.3E-05 51.0 10.6 146 1121-1316 21-176 (179)
70 PRK15128 23S rRNA m(5)C1962 me 92.6 0.25 5.5E-06 61.1 7.5 43 1120-1163 221-263 (396)
71 PRK09328 N5-glutamine S-adenos 92.4 1.8 3.9E-05 50.4 14.0 46 1119-1164 108-153 (275)
72 PRK14967 putative methyltransf 92.2 1.3 2.8E-05 50.4 12.1 43 1120-1163 37-79 (223)
73 PF02475 Met_10: Met-10+ like- 92.0 0.13 2.9E-06 57.7 3.6 42 1120-1162 102-144 (200)
74 KOG3420 Predicted RNA methylas 91.9 0.14 3.1E-06 53.8 3.5 47 1118-1165 47-93 (185)
75 PRK10901 16S rRNA methyltransf 91.4 0.56 1.2E-05 58.7 8.6 45 1120-1164 245-289 (427)
76 smart00650 rADc Ribosomal RNA 91.2 0.4 8.7E-06 52.0 6.4 43 1121-1165 15-57 (169)
77 PRK14904 16S rRNA methyltransf 91.0 0.82 1.8E-05 57.5 9.7 85 1121-1235 252-337 (445)
78 TIGR00308 TRM1 tRNA(guanine-26 90.9 0.31 6.8E-06 59.8 5.6 58 1120-1178 45-109 (374)
79 TIGR00446 nop2p NOL1/NOP2/sun 90.8 0.65 1.4E-05 54.4 7.9 44 1120-1163 72-116 (264)
80 COG2890 HemK Methylase of poly 90.6 0.19 4.2E-06 59.3 3.4 42 1122-1163 113-154 (280)
81 COG2520 Predicted methyltransf 90.2 0.27 5.8E-06 59.3 4.1 129 1120-1296 189-317 (341)
82 TIGR03534 RF_mod_PrmC protein- 90.1 2.2 4.9E-05 48.7 11.5 44 1120-1163 88-131 (251)
83 PF01170 UPF0020: Putative RNA 89.7 0.41 8.8E-06 52.8 4.8 108 1120-1264 29-147 (179)
84 PRK14901 16S rRNA methyltransf 89.4 0.81 1.8E-05 57.4 7.7 43 1121-1163 254-297 (434)
85 TIGR03533 L3_gln_methyl protei 89.4 0.93 2E-05 53.7 7.8 44 1120-1163 122-165 (284)
86 PRK04338 N(2),N(2)-dimethylgua 88.8 0.64 1.4E-05 57.3 6.1 43 1120-1163 58-101 (382)
87 PRK14902 16S rRNA methyltransf 88.2 1.3 2.8E-05 55.8 8.3 86 1121-1234 252-338 (444)
88 cd02440 AdoMet_MTases S-adenos 88.2 2.8 6.1E-05 39.3 8.9 38 1122-1160 1-38 (107)
89 TIGR01177 conserved hypothetic 86.5 2.1 4.5E-05 51.8 8.5 42 1120-1163 183-224 (329)
90 PRK14968 putative methyltransf 86.4 5.8 0.00013 43.1 11.2 42 1120-1163 24-65 (188)
91 KOG2730 Methylase [General fun 85.9 0.99 2.1E-05 50.9 4.8 82 1120-1232 95-181 (263)
92 TIGR00563 rsmB ribosomal RNA s 85.8 1.6 3.6E-05 54.5 7.4 88 1121-1235 240-328 (426)
93 TIGR02143 trmA_only tRNA (urac 83.6 1.1 2.4E-05 54.7 4.3 40 1122-1163 200-239 (353)
94 PF02005 TRM: N2,N2-dimethylgu 83.5 1.3 2.9E-05 54.5 5.0 58 1119-1177 49-115 (377)
95 PF05958 tRNA_U5-meth_tr: tRNA 83.1 0.91 2E-05 55.4 3.3 39 1122-1162 199-237 (352)
96 PF13847 Methyltransf_31: Meth 83.0 3.3 7.1E-05 44.0 7.2 44 1119-1162 3-47 (152)
97 PRK11805 N5-glutamine S-adenos 83.0 1.6 3.5E-05 52.3 5.3 43 1121-1163 135-177 (307)
98 PRK14903 16S rRNA methyltransf 82.3 2.5 5.3E-05 53.1 6.8 43 1121-1163 239-282 (431)
99 KOG1227 Putative methyltransfe 82.0 0.68 1.5E-05 54.2 1.6 42 1121-1163 196-238 (351)
100 PRK00121 trmB tRNA (guanine-N( 82.0 8.5 0.00018 43.2 10.3 45 1119-1163 40-84 (202)
101 PRK14966 unknown domain/N5-glu 80.7 3.2 7E-05 51.6 6.8 43 1121-1163 253-295 (423)
102 COG1092 Predicted SAM-dependen 80.0 22 0.00048 44.2 13.6 42 1121-1163 219-260 (393)
103 PRK03612 spermidine synthase; 76.8 29 0.00064 44.8 14.0 154 1120-1319 298-459 (521)
104 PRK07402 precorrin-6B methylas 75.9 3.5 7.5E-05 45.9 4.8 44 1120-1163 41-84 (196)
105 PRK14896 ksgA 16S ribosomal RN 74.9 5.1 0.00011 46.8 6.0 43 1120-1164 30-72 (258)
106 TIGR02987 met_A_Alw26 type II 74.6 3.2 6.9E-05 53.4 4.6 45 1119-1163 31-83 (524)
107 PF10672 Methyltrans_SAM: S-ad 73.5 7.4 0.00016 46.3 6.9 43 1120-1163 124-166 (286)
108 TIGR00755 ksgA dimethyladenosi 72.3 6.1 0.00013 45.9 5.8 43 1120-1164 30-72 (253)
109 PRK08287 cobalt-precorrin-6Y C 71.1 5.3 0.00011 44.0 4.7 44 1120-1163 32-75 (187)
110 PRK00274 ksgA 16S ribosomal RN 70.8 6.2 0.00014 46.4 5.5 43 1120-1164 43-85 (272)
111 PRK09489 rsmC 16S ribosomal RN 69.7 6 0.00013 48.2 5.2 42 1122-1163 199-240 (342)
112 COG2264 PrmA Ribosomal protein 69.7 6.6 0.00014 46.9 5.3 44 1119-1163 162-205 (300)
113 TIGR00406 prmA ribosomal prote 68.8 6.4 0.00014 46.8 5.0 43 1120-1163 160-202 (288)
114 PRK00517 prmA ribosomal protei 67.4 7.3 0.00016 45.2 5.0 44 1119-1163 119-162 (250)
115 PF12847 Methyltransf_18: Meth 67.2 9.2 0.0002 37.8 5.1 41 1121-1163 3-45 (112)
116 TIGR00536 hemK_fam HemK family 67.1 6.5 0.00014 46.5 4.6 43 1121-1163 116-158 (284)
117 KOG2133 Transcriptional corepr 66.8 5.4 0.00012 52.7 4.0 141 902-1071 117-280 (1229)
118 PF06325 PrmA: Ribosomal prote 66.7 6.6 0.00014 46.9 4.6 41 1121-1162 163-203 (295)
119 PF10383 Clr2: Transcription-s 66.3 18 0.0004 38.5 7.3 55 752-806 1-72 (139)
120 COG2242 CobL Precorrin-6B meth 64.6 95 0.0021 34.9 12.5 43 1121-1163 36-78 (187)
121 PRK01544 bifunctional N5-gluta 63.8 10 0.00022 48.8 5.7 42 1120-1163 139-182 (506)
122 PRK10742 putative methyltransf 62.8 11 0.00024 43.8 5.3 43 1119-1163 88-130 (250)
123 COG4123 Predicted O-methyltran 62.6 9.5 0.00021 44.4 4.7 42 1120-1162 45-87 (248)
124 TIGR02469 CbiT precorrin-6Y C5 61.8 12 0.00026 37.5 4.8 42 1121-1162 21-62 (124)
125 COG2227 UbiG 2-polyprenyl-3-me 61.0 10 0.00023 43.7 4.6 47 1119-1167 59-105 (243)
126 PRK10258 biotin biosynthesis p 60.1 21 0.00044 41.2 6.9 44 1120-1165 43-86 (251)
127 PRK11933 yebU rRNA (cytosine-C 60.0 16 0.00034 46.6 6.4 45 1119-1163 113-158 (470)
128 PLN02672 methionine S-methyltr 59.6 14 0.0003 51.3 6.1 43 1121-1163 120-162 (1082)
129 PRK01581 speE spermidine synth 59.6 2.9E+02 0.0062 34.4 16.5 161 1120-1320 151-314 (374)
130 COG0144 Sun tRNA and rRNA cyto 59.2 32 0.00069 42.3 8.7 45 1119-1163 156-202 (355)
131 KOG2904 Predicted methyltransf 59.1 14 0.0003 43.4 5.0 43 1120-1163 149-192 (328)
132 PRK00377 cbiT cobalt-precorrin 58.7 13 0.00027 41.6 4.7 43 1120-1162 41-84 (198)
133 TIGR03840 TMPT_Se_Te thiopurin 58.6 13 0.00028 42.4 4.8 39 1120-1160 35-73 (213)
134 TIGR00080 pimt protein-L-isoas 58.0 17 0.00037 41.0 5.7 45 1119-1163 77-122 (215)
135 PRK01683 trans-aconitate 2-met 57.9 24 0.00052 40.8 7.1 48 1119-1167 31-79 (258)
136 PLN02336 phosphoethanolamine N 57.8 46 0.001 42.3 10.1 38 1120-1159 38-75 (475)
137 PRK15001 SAM-dependent 23S rib 55.1 14 0.0003 45.7 4.6 43 1121-1163 230-272 (378)
138 COG1041 Predicted DNA modifica 54.8 15 0.00032 44.7 4.6 143 1121-1317 199-344 (347)
139 PRK06922 hypothetical protein; 54.7 43 0.00092 44.2 8.9 44 1120-1163 419-462 (677)
140 TIGR00091 tRNA (guanine-N(7)-) 54.6 1.1E+02 0.0025 33.9 11.4 43 1120-1162 17-59 (194)
141 COG3897 Predicted methyltransf 54.5 9.3 0.0002 42.8 2.7 45 1118-1163 78-122 (218)
142 TIGR02021 BchM-ChlM magnesium 54.2 13 0.00029 41.9 4.0 44 1119-1164 55-98 (219)
143 PRK11207 tellurite resistance 53.8 18 0.00039 40.4 4.9 41 1120-1162 31-71 (197)
144 TIGR02752 MenG_heptapren 2-hep 53.6 25 0.00054 39.9 6.1 44 1120-1163 46-90 (231)
145 PLN02585 magnesium protoporphy 53.6 18 0.00039 43.7 5.2 43 1120-1164 145-187 (315)
146 KOG2187 tRNA uracil-5-methyltr 53.5 17 0.00036 46.1 4.9 40 1121-1162 385-424 (534)
147 TIGR00417 speE spermidine synt 53.0 2.4E+02 0.0052 33.2 14.3 156 1121-1319 74-232 (270)
148 PF02086 MethyltransfD12: D12 53.0 11 0.00023 43.5 3.1 40 1119-1160 20-59 (260)
149 PF01555 N6_N4_Mtase: DNA meth 52.6 18 0.00039 40.3 4.7 38 1120-1159 192-229 (231)
150 TIGR00478 tly hemolysin TlyA f 52.6 20 0.00043 41.4 5.1 46 1119-1165 75-120 (228)
151 PRK13255 thiopurine S-methyltr 51.8 19 0.00041 41.2 4.7 39 1120-1160 38-76 (218)
152 COG1867 TRM1 N2,N2-dimethylgua 50.1 23 0.0005 43.3 5.2 58 1120-1179 53-117 (380)
153 PRK07580 Mg-protoporphyrin IX 49.6 19 0.00042 40.6 4.4 44 1119-1164 63-106 (230)
154 PRK04148 hypothetical protein; 48.9 27 0.00059 37.1 5.0 42 1120-1163 17-59 (134)
155 TIGR00138 gidB 16S rRNA methyl 48.5 20 0.00042 39.8 4.1 43 1120-1162 43-85 (181)
156 PLN02396 hexaprenyldihydroxybe 47.3 25 0.00054 42.7 5.0 42 1119-1162 131-172 (322)
157 PRK05785 hypothetical protein; 45.9 67 0.0015 36.8 8.0 40 1120-1161 52-92 (226)
158 TIGR03587 Pse_Me-ase pseudamin 45.7 27 0.00059 39.4 4.8 47 1120-1167 44-91 (204)
159 PRK11036 putative S-adenosyl-L 43.7 33 0.00071 39.9 5.2 43 1119-1163 44-86 (255)
160 COG3963 Phospholipid N-methylt 42.4 1E+02 0.0022 34.2 8.0 85 1119-1232 48-133 (194)
161 PRK00312 pcm protein-L-isoaspa 42.3 42 0.00091 37.7 5.6 44 1119-1164 78-121 (212)
162 PRK12335 tellurite resistance 41.8 31 0.00066 41.0 4.6 39 1122-1162 123-161 (287)
163 PF09926 DUF2158: Uncharacteri 41.2 38 0.00081 30.4 3.9 41 764-809 1-42 (53)
164 PF13649 Methyltransf_25: Meth 41.1 32 0.00069 33.7 3.9 41 1123-1163 1-44 (101)
165 PRK04266 fibrillarin; Provisio 39.9 37 0.00081 39.1 4.7 42 1120-1162 73-115 (226)
166 TIGR01444 fkbM_fam methyltrans 38.6 44 0.00095 34.7 4.7 42 1122-1163 1-42 (143)
167 PF03848 TehB: Tellurite resis 38.6 43 0.00093 37.7 4.8 40 1119-1160 30-69 (192)
168 PRK11727 23S rRNA mA1618 methy 37.2 50 0.0011 40.1 5.4 44 1118-1163 113-158 (321)
169 PRK06202 hypothetical protein; 37.2 51 0.0011 37.6 5.3 45 1119-1163 60-108 (232)
170 PF01189 Nol1_Nop2_Fmu: NOL1/N 36.3 1.3E+02 0.0027 36.0 8.6 44 1120-1163 86-130 (283)
171 PF02384 N6_Mtase: N-6 DNA Met 36.0 38 0.00083 40.4 4.3 44 1119-1162 46-96 (311)
172 PRK05134 bifunctional 3-demeth 35.8 51 0.0011 37.5 5.0 43 1119-1163 48-90 (233)
173 PLN02244 tocopherol O-methyltr 35.7 47 0.001 40.5 5.0 42 1119-1162 118-160 (340)
174 PF13489 Methyltransf_23: Meth 35.4 51 0.0011 34.5 4.7 38 1119-1158 22-59 (161)
175 PLN02823 spermine synthase 35.0 8.9E+02 0.019 29.8 15.6 160 1120-1319 104-267 (336)
176 PF08241 Methyltransf_11: Meth 34.8 1.2E+02 0.0025 28.5 6.6 42 1124-1166 1-42 (95)
177 PF00301 Rubredoxin: Rubredoxi 34.7 23 0.00049 31.0 1.4 27 881-913 7-43 (47)
178 COG2226 UbiE Methylase involve 34.6 53 0.0011 38.2 4.9 46 1119-1165 51-97 (238)
179 PF00398 RrnaAD: Ribosomal RNA 34.3 55 0.0012 38.4 5.1 44 1119-1164 30-73 (262)
180 KOG3191 Predicted N6-DNA-methy 34.1 1.1E+02 0.0023 34.4 6.7 39 1120-1158 44-83 (209)
181 TIGR02072 BioC biotin biosynth 33.8 56 0.0012 36.7 5.0 45 1120-1164 35-79 (240)
182 TIGR00477 tehB tellurite resis 33.7 58 0.0013 36.3 5.0 41 1120-1162 31-71 (195)
183 COG4671 Predicted glycosyl tra 33.5 63 0.0014 39.5 5.3 52 1216-1270 43-117 (400)
184 PRK00107 gidB 16S rRNA methylt 33.2 55 0.0012 36.6 4.6 41 1120-1162 46-88 (187)
185 PRK11524 putative methyltransf 32.5 50 0.0011 39.2 4.4 41 1120-1162 209-249 (284)
186 COG5475 Uncharacterized small 32.0 1.2E+02 0.0026 27.5 5.3 39 761-808 2-40 (60)
187 KOG2078 tRNA modification enzy 31.8 27 0.0006 43.2 2.1 55 1121-1177 251-312 (495)
188 COG5076 Transcription factor i 31.6 7.3 0.00016 48.0 -2.9 91 932-1045 272-362 (371)
189 PTZ00338 dimethyladenosine tra 31.6 51 0.0011 39.5 4.3 42 1120-1163 37-78 (294)
190 KOG1500 Protein arginine N-met 31.5 66 0.0014 38.8 4.9 108 1120-1271 178-285 (517)
191 PRK13699 putative methylase; P 30.8 66 0.0014 37.1 4.9 39 1121-1161 165-203 (227)
192 smart00828 PKS_MT Methyltransf 29.0 85 0.0018 35.4 5.4 42 1122-1163 2-43 (224)
193 PRK14103 trans-aconitate 2-met 28.5 97 0.0021 35.9 5.8 42 1119-1162 29-72 (255)
194 PRK13944 protein-L-isoaspartat 27.7 83 0.0018 35.4 4.9 44 1120-1163 73-117 (205)
195 PF10163 EnY2: Transcription f 27.0 97 0.0021 30.3 4.6 40 197-241 13-62 (86)
196 TIGR01934 MenG_MenH_UbiE ubiqu 27.0 91 0.002 34.7 5.1 46 1119-1164 39-85 (223)
197 COG0116 Predicted N6-adenine-s 26.4 78 0.0017 39.2 4.6 47 1207-1261 289-336 (381)
198 PRK13942 protein-L-isoaspartat 26.0 90 0.002 35.4 4.8 44 1120-1163 77-121 (212)
199 PF03291 Pox_MCEL: mRNA cappin 25.9 63 0.0014 39.5 3.7 39 1119-1158 62-100 (331)
200 KOG1270 Methyltransferases [Co 25.6 60 0.0013 38.2 3.2 41 1120-1162 90-130 (282)
201 PF05185 PRMT5: PRMT5 arginine 25.3 1.1E+02 0.0025 38.8 6.0 42 1119-1160 186-231 (448)
202 TIGR01983 UbiG ubiquinone bios 25.1 1E+02 0.0022 34.7 5.0 43 1119-1163 45-87 (224)
203 PRK00811 spermidine synthase; 25.0 87 0.0019 37.3 4.6 155 1120-1319 77-237 (283)
204 PRK00216 ubiE ubiquinone/menaq 24.5 1E+02 0.0022 34.7 4.9 45 1119-1164 51-97 (239)
205 TIGR03214 ura-cupin putative a 23.7 6.4E+02 0.014 29.8 11.4 69 756-838 92-162 (260)
206 COG0030 KsgA Dimethyladenosine 22.8 1.5E+02 0.0033 35.0 5.9 43 1120-1164 31-73 (259)
207 TIGR02081 metW methionine bios 22.2 1.1E+02 0.0025 33.8 4.7 41 1121-1162 15-55 (194)
208 PRK11188 rrmJ 23S rRNA methylt 22.1 74 0.0016 36.0 3.2 34 1120-1153 52-86 (209)
209 PLN02781 Probable caffeoyl-CoA 20.7 1.1E+02 0.0025 35.2 4.4 45 1120-1164 69-114 (234)
210 PRK00050 16S rRNA m(4)C1402 me 20.7 1.3E+02 0.0028 36.3 4.9 44 1120-1163 20-64 (296)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=4e-57 Score=530.72 Aligned_cols=329 Identities=35% Similarity=0.624 Sum_probs=210.3
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
++++||||||||+++||++||+.+ +||+|+|+.|++||++||| .+. ++||.+.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~~~-~~a~e~~~~a~~~y~~N~~--~~~--------------~~Di~~~---------- 53 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGFEV-VWAVEIDPDACETYKANFP--EVI--------------CGDITEI---------- 53 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTEEE-EEEEESSHHHHHHHHHHHT--EEE--------------ESHGGGC----------
T ss_pred CcEEEEccCccHHHHHHHhcCcEE-EEEeecCHHHHHhhhhccc--ccc--------------ccccccc----------
Confidence 589999999999999999999887 5999999999999999999 333 2665432
Q ss_pred hhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchhH
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~f 1280 (1558)
... .+|. ++|||+||||||+||.+|+.+ ...+.|+.|+++|+++|+.++|++||||||+||++.+++.+|
T Consensus 54 ---~~~---~l~~--~~D~l~ggpPCQ~fS~ag~~~--~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~ 123 (335)
T PF00145_consen 54 ---DPS---DLPK--DVDLLIGGPPCQGFSIAGKRK--GFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVF 123 (335)
T ss_dssp ---HHH---HHHH--T-SEEEEE---TTTSTTSTHH--CCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHH
T ss_pred ---ccc---cccc--cceEEEeccCCceEecccccc--ccccccchhhHHHHHHHhhccceEEEecccceeecccccccc
Confidence 111 2332 699999999999999999733 346788999999999999999999999999999999889999
Q ss_pred HHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeecCCCCCC-CCCCCccccchhhhhhhcccccccccccccCCCC
Q 000407 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLP-EWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359 (1558)
Q Consensus 1281 ~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar~g~~lP-~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~ 1359 (1558)
..+++.|.++||+|.+.+|||++|||||+|+|+||||.+.+...+ .++.+.+.+
T Consensus 124 ~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~~~~~~~~~~~~~~~~------------------------- 178 (335)
T PF00145_consen 124 KEILEELEELGYNVQWRVLNAADYGVPQNRERVFIVGIRKDLPLPPPFPIPKFDF------------------------- 178 (335)
T ss_dssp HHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEGGG--TSSCCGTTEEC-------------------------
T ss_pred ccccccccccceeehhccccHhhCCCCCceeeEEEEEECCCCCcccccccccccc-------------------------
Confidence 999999999999999999999999999999999999999887654 222222211
Q ss_pred CCcc-ccHHhHhcCCCCCCCCCCccccccCCCChhhHHHhHhcCccccchhhhhhchHHHHHHhhcCCCCCCCCCCCCCc
Q 000407 1360 PFRA-MTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPD 1438 (1558)
Q Consensus 1360 p~~~-iTv~DaI~DLP~v~~g~~~~~~~y~~~p~s~~q~~ir~~~~~l~dH~~k~~~~l~l~R~~~Ip~~~G~dwr~Lp~ 1438 (1558)
|... .++.++|.|++.......... ..+....+.. +.. ....... ++..+. .
T Consensus 179 ~~~~~~~~~~~i~dl~~~~~~~~~~~-------~~~~~~~~~~-------~~~--~~~~~~~--------~~~~~~---~ 231 (335)
T PF00145_consen 179 PEPKDPTVSDAIRDLPDEPSPKDEDK-------YNFSDRVIED-------LNR--IRNNTIK--------PGKGIP---N 231 (335)
T ss_dssp -SSCG-SHHHHHGGGSTSCCECCCCC-------GBHSHCHHCS-------HCC--SHHHHHH--------HCCCCS---T
T ss_pred cccccccceeeEeecccccccccccc-------cccchhhhhh-------hcc--ccccccc--------cccchh---h
Confidence 1111 578888888876531110000 0000000000 000 0000000 011111 0
Q ss_pred cccccccCccccccccCCCCccccCCccccceecccCCCCCCccccCCCCCCCcc----ccccCCCCccccHHHHHhcCC
Q 000407 1439 EKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVG----MCFHPDQDRILTVRECARSQG 1514 (1558)
Q Consensus 1439 ~~v~l~~G~~~~l~p~~lp~~a~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g----~~lHP~q~R~LTVRE~ARLQG 1514 (1558)
...+..... ....+.....|.+..|.......++........+ ..+||.+.|.|||||||||||
T Consensus 232 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~R~LT~rE~aRLqg 299 (335)
T PF00145_consen 232 KISRNRIDK------------IEDLKGPSRTYRRSGRGEKMPPQIPTTGSTGKNGHRFRPFIHPEQNRRLTPREAARLQG 299 (335)
T ss_dssp HEECTSTTT------------TCECTTTCTCCTTSCTCC-BCCCCCSTSTTTTTHEHCCTEBTTSSSCB-BHHHHHHHTT
T ss_pred hhhhhhccc------------cccccccccccccccccccccccccccccccccCCccccccCCCCCCcCcHHHHHHhCC
Confidence 000000000 0000111112222222111111111111111122 268999999999999999999
Q ss_pred CCCCceecCCHHHHHHhcccCccHHHHHHHHHHHHH
Q 000407 1515 FPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKE 1550 (1558)
Q Consensus 1515 FPD~y~F~Gs~~~~yrQIGNAVPppva~aIg~~L~~ 1550 (1558)
|||+|.|.|+..++|+||||||||+|+++||++|++
T Consensus 300 FPd~~~f~g~~~~~~~qiGNAVpp~v~~~I~~~i~~ 335 (335)
T PF00145_consen 300 FPDDFKFPGSKTQQYKQIGNAVPPPVAEAIAKAIKK 335 (335)
T ss_dssp SSTTS-S-SSHHHHHHHHHCS--HHHHHHHHHHHH-
T ss_pred CCCceEccCCHHHHhceECCCcCHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999975
No 2
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.1e-56 Score=521.80 Aligned_cols=308 Identities=28% Similarity=0.465 Sum_probs=220.4
Q ss_pred eeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHHhh
Q 000407 1123 TLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAAS 1202 (1558)
Q Consensus 1123 ~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~~~ 1202 (1558)
++||||||||+++||++||+.+ +||+|+|+.|++||++|||+ .++. +|+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~-~~a~e~~~~a~~ty~~N~~~-~~~~--------------~Di~~------------- 51 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKC-VFASEIDKYAQKTYEANFGN-KVPF--------------GDITK------------- 51 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeE-EEEEeCCHHHHHHHHHhCCC-CCCc--------------cChhh-------------
Confidence 5899999999999999999986 69999999999999999998 3332 55532
Q ss_pred cchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchhHHH
Q 000407 1203 LDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRL 1282 (1558)
Q Consensus 1203 l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~f~~ 1282 (1558)
+.. ..+| ++|+|+||||||+||.+|+.+ ...+.|+.|+++++++|+.++|++||||||+||++.++|..|..
T Consensus 52 ~~~---~~~~---~~dvl~gg~PCq~fS~ag~~~--~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~ 123 (315)
T TIGR00675 52 ISP---SDIP---DFDILLGGFPCQPFSIAGKRK--GFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKV 123 (315)
T ss_pred hhh---hhCC---CcCEEEecCCCcccchhcccC--CCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHH
Confidence 111 1244 699999999999999999754 23578999999999999999999999999999999988999999
Q ss_pred HHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeec-CCC-CCCCCCCCccccchhhhhhhcccccccccccccCCCCC
Q 000407 1283 TLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS-PHD-TLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360 (1558)
Q Consensus 1283 il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar-~g~-~lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~p 1360 (1558)
++..|.++||++.+.+|||++|||||+|+|+|+||.+ .+. ....||.|+|.
T Consensus 124 i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~~--------------------------- 176 (315)
T TIGR00675 124 IIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIYV--------------------------- 176 (315)
T ss_pred HHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCCCCCCCccc---------------------------
Confidence 9999999999999999999999999999999999998 432 23466766551
Q ss_pred CccccHHhHhcCCCCCCCCCCccccccCCCChhhHHHhHhcCccccchhhhhhchHHHHHHhhcCCCCCCCCCCCCCccc
Q 000407 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440 (1558)
Q Consensus 1361 ~~~iTv~DaI~DLP~v~~g~~~~~~~y~~~p~s~~q~~ir~~~~~l~dH~~k~~~~l~l~R~~~Ip~~~G~dwr~Lp~~~ 1440 (1558)
....+++|++..++..... |. + +...+.++..++ ++..|.+....
T Consensus 177 ~~~~~l~d~~~~~~~~~~~-------~~-----------------~--------~~~~~~~~~~~~--~~~~~~~~~~~- 221 (315)
T TIGR00675 177 AKKKRIGDLLDLSVDLEEK-------YY-----------------L--------SEEKKNGLLLLL--ENMRKKEGTGE- 221 (315)
T ss_pred ccccchHHhcccccCcCCc-------EE-----------------e--------CHHHHHHHHHHh--hcccccccccc-
Confidence 0123555555443321110 00 0 011122222232 23333321000
Q ss_pred cccccCccccccccCCCCccccCCccccceecccC-----CCCCCccccCCCCCCCccccccCCCCccccHHHHHhcCCC
Q 000407 1441 VKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDW-----EGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515 (1558)
Q Consensus 1441 v~l~~G~~~~l~p~~lp~~a~r~~~~~~~YgRl~~-----d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTVRE~ARLQGF 1515 (1558)
.+. ...+...|...+.++.| +.+..|+++... ..+ .+||.+.|.||+||+||||||
T Consensus 222 --------------~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~---~~~-~~hp~~~R~lT~RE~aRLQ~F 282 (315)
T TIGR00675 222 --------------QIG-SFYNRESKSSIIRTLSARGYTFVKGGKSVLIVPH---KST-VVHPGRIRRLTPRECARLQGF 282 (315)
T ss_pred --------------ccc-eeeccCCccceeeeeeccccccCCCCcceeeccc---cce-eccCCceeeCCHHHHHHHcCC
Confidence 000 00111223333344443 122222222111 112 289999999999999999999
Q ss_pred CCCceecCCHHHHHHhcccCccHHHHHHHHHHH
Q 000407 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKL 1548 (1558)
Q Consensus 1516 PD~y~F~Gs~~~~yrQIGNAVPppva~aIg~~L 1548 (1558)
||+|+|.|+.+++|+||||||||+|+++||+.|
T Consensus 283 Pd~f~f~~s~~~~~~qiGNAVPp~la~~I~~~i 315 (315)
T TIGR00675 283 PDDFKFPVSDSQLYKQAGNAVVVPVIEAIAKQI 315 (315)
T ss_pred CcccEeCCCHHHHHhhhCCcccHHHHHHHHhhC
Confidence 999999999999999999999999999999865
No 3
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=6e-54 Score=494.81 Aligned_cols=272 Identities=33% Similarity=0.560 Sum_probs=211.9
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
|+++||||||||+++||+++|+.+ +||+|+|+.|++||++|||++. + ++|+.+.
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~~~-v~a~e~~~~a~~~~~~N~~~~~-~--------------~~Di~~~---------- 54 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEI-VAANEIDKSAAETYEANFPNKL-I--------------EGDITKI---------- 54 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCCEE-EEEEeCCHHHHHHHHHhCCCCC-c--------------cCccccC----------
Confidence 579999999999999999999886 6999999999999999999762 2 2666431
Q ss_pred hhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchhH
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~f 1280 (1558)
.... + .+++|+|+||||||+||.+|+.+ ..++.++.|+++|+++|+.++|++|+||||+||++.+++..|
T Consensus 55 ---~~~~---~--~~~~D~l~~gpPCq~fS~ag~~~--~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~ 124 (275)
T cd00315 55 ---DEKD---F--IPDIDLLTGGFPCQPFSIAGKRK--GFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTL 124 (275)
T ss_pred ---chhh---c--CCCCCEEEeCCCChhhhHHhhcC--CCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHH
Confidence 1111 1 24799999999999999999743 335778999999999999999999999999999998888999
Q ss_pred HHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeecCCCCCCCCC-CCccccchhhhhhhcccccccccccccCCCC
Q 000407 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWP-EPMHVFAAPELKIMLSDNYQYSAVRSTANGA 1359 (1558)
Q Consensus 1281 ~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar~g~~lP~~P-~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~ 1359 (1558)
..+++.|.++||++.+.+|||.+||+||+|+|+|+||.+.+...+..+ .|++.
T Consensus 125 ~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~-------------------------- 178 (275)
T cd00315 125 KVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPS-------------------------- 178 (275)
T ss_pred HHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCC--------------------------
Confidence 999999999999999999999999999999999999999886543321 12221
Q ss_pred CCccccHHhHhcCCCCCCCCCCccccccCCCChhhHHHhHhcCccccchhhhhhchHHHHHHhhcCCCCCCCCCCCCCcc
Q 000407 1360 PFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE 1439 (1558)
Q Consensus 1360 p~~~iTv~DaI~DLP~v~~g~~~~~~~y~~~p~s~~q~~ir~~~~~l~dH~~k~~~~l~l~R~~~Ip~~~G~dwr~Lp~~ 1439 (1558)
...+|++|+|.-+ +|.. |.
T Consensus 179 -~~~~t~~d~l~~~----------------------------------------------------------~~~~-~~- 197 (275)
T cd00315 179 -EKKKTLKDILRIR----------------------------------------------------------DPDE-PS- 197 (275)
T ss_pred -CCCCcHHHHHhhh----------------------------------------------------------cCCC-Cc-
Confidence 1346888888100 0000 00
Q ss_pred ccccccCccccccccCCCCccccCCccccceecccCCCCCCccccCCCCCCCccccccCCCCccccHHHHHhcCCCCCCc
Q 000407 1440 KVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSY 1519 (1558)
Q Consensus 1440 ~v~l~~G~~~~l~p~~lp~~a~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTVRE~ARLQGFPD~y 1519 (1558)
.|+.....+ ..+++.|.. ++ ...||.+.|.||+||+||||||||+|
T Consensus 198 --------------~ti~~~~~~------~~~~~~~~~--~~------------~~~~~~~~R~lT~rE~arlqgFPd~f 243 (275)
T cd00315 198 --------------PTLTASYGK------GTGSVHPTA--PD------------MIGKESNIRRLTPRECARLQGFPDDF 243 (275)
T ss_pred --------------cceecCCCC------CccccccCc--cc------------ccccCCCCCCCCHHHHHHHcCCCCCc
Confidence 000000000 011111111 00 14588999999999999999999999
Q ss_pred eecC-CHHHHHHhcccCccHHHHHHHHHHHH
Q 000407 1520 QFHG-SIQHKHRQIGNAVPPTLAFALGRKLK 1549 (1558)
Q Consensus 1520 ~F~G-s~~~~yrQIGNAVPppva~aIg~~L~ 1549 (1558)
.|.| +.+++|+||||||||+|+++||+.|.
T Consensus 244 ~f~g~~~~~~~~qiGNAVp~~~~~~I~~~i~ 274 (275)
T cd00315 244 EFPGKSVTQAYRQIGNSVPVPVAEAIAKAIK 274 (275)
T ss_pred EEcCCCHHHHHHhhcCCcCHHHHHHHHHHHh
Confidence 9999 99999999999999999999999886
No 4
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.3e-54 Score=506.79 Aligned_cols=323 Identities=35% Similarity=0.578 Sum_probs=235.5
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~e 1198 (1558)
.+++++||||||||+++||++||+.+ +||+|+|+.|++||++|||...... +|+..
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~-~~a~Eid~~a~~ty~~n~~~~~~~~--------------~di~~--------- 57 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEI-VFANEIDPPAVATYKANFPHGDIIL--------------GDIKE--------- 57 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeE-EEEEecCHHHHHHHHHhCCCCceee--------------chHhh---------
Confidence 47899999999999999999999887 6999999999999999999633221 33321
Q ss_pred HHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccch
Q 000407 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278 (1558)
Q Consensus 1199 l~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~ 1278 (1558)
+....+... ++|+|+||||||+||.||+. ...+|.|++|+++|+++|+..+|++||||||+||++. ++.
T Consensus 58 ----~~~~~~~~~----~~DvligGpPCQ~FS~aG~r--~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~-~~~ 126 (328)
T COG0270 58 ----LDGEALRKS----DVDVLIGGPPCQDFSIAGKR--RGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSS-KGQ 126 (328)
T ss_pred ----cChhhcccc----CCCEEEeCCCCcchhhcCcc--cCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhc-Cch
Confidence 111111111 79999999999999999985 4457899999999999999999999999999999998 889
Q ss_pred hHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeecCCCCCCCCCCCccccchhhhhhhcccccccccccccCCC
Q 000407 1279 TFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANG 1358 (1558)
Q Consensus 1279 ~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar~g~~lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~ 1358 (1558)
+|+.+++.|.++||.+.+.+|||++|||||+|+|+||||.+.+.....+..+. ..
T Consensus 127 ~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~~-------------------------~~ 181 (328)
T COG0270 127 TFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVLP-------------------------PL 181 (328)
T ss_pred HHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCccccccccccC-------------------------cc
Confidence 99999999999999999999999999999999999999988752211111000 00
Q ss_pred CCCccccHHhHhcC--CCCCCCCCCccccccCCCChhhHHHhHhcCccccchhhhhhchHHHHHHhhcCCCCCCCCCCCC
Q 000407 1359 APFRAMTVRDTIGD--LPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436 (1558)
Q Consensus 1359 ~p~~~iTv~DaI~D--LP~v~~g~~~~~~~y~~~p~s~~q~~ir~~~~~l~dH~~k~~~~l~l~R~~~Ip~~~G~dwr~L 1436 (1558)
......++.+++.+ ++..... +...+ ...|-.. .++......++..
T Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~--------------~~~~~~~-----------~~~~~~~~~~~~~ 229 (328)
T COG0270 182 PLGRKKTLKEALKNNDLPETDEL-------YLSRD--------------LRNHEAK-----------SLPKNKGERLPSL 229 (328)
T ss_pred ccccccchhhhhhhccCcchhhh-------hcccc--------------ccccccc-----------cCchhhhcccccc
Confidence 00123455666653 3321100 00000 0111110 0010000111111
Q ss_pred CccccccccCccccccccCCCC-ccccCCccccceecccCCCCCCccccCCCCCCCccccccCCCCccccHHHHHhcCCC
Q 000407 1437 PDEKVKLSTGQVVDLIPWCLPN-TAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGF 1515 (1558)
Q Consensus 1437 p~~~v~l~~G~~~~l~p~~lp~-~a~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTVRE~ARLQGF 1515 (1558)
. |.... ...+.. ..+.|.||.|+.+++|+.. +.....+||.++|.||+||+||||||
T Consensus 230 ~----------------~~~~~~~~~~~~-~~~~~~rl~~~~~~~t~~~-----~~~~~~~h~~~~r~lt~rE~arlq~f 287 (328)
T COG0270 230 R----------------WGEALTLSRRYK-GKGSYIRLHPDKPAPTVRG-----GGNERFIHPLEDRELTVREAARLQGF 287 (328)
T ss_pred c----------------cccccccccccC-CCceeEeCCCCCCCceeec-----CCCcccCCCCcCCCCCHHHHHHhcCC
Confidence 0 00000 011111 1678999999999999882 22356789999999999999999999
Q ss_pred CCCceecCCHHHHHHhcccCccHHHHHHHHHHHHHHHHhh
Q 000407 1516 PDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1516 PD~y~F~Gs~~~~yrQIGNAVPppva~aIg~~L~~aL~~~ 1555 (1558)
||+|.|.|+.+++|+||||||||+++++||+.|.+.|...
T Consensus 288 Pd~~~~~gs~~~~~~qiGnsVp~~l~~~ia~~i~~~l~~~ 327 (328)
T COG0270 288 PDDFVFPGSKTDQYRQIGNSVPPLLAEAIAKAILKKLNEK 327 (328)
T ss_pred CCceEEeccchhhhhhccCcCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999998753
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=3.4e-49 Score=478.91 Aligned_cols=344 Identities=25% Similarity=0.348 Sum_probs=221.4
Q ss_pred ccCCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC---CCCchhcchhhHHHHHHHhhcCCCccccch
Q 000407 1117 QENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH---PESLMLINNCNVILRAVMEKCGDAEDCVST 1193 (1558)
Q Consensus 1117 ~~~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~---P~~~~~~~~~n~il~~~~~~~GDi~d~i~~ 1193 (1558)
...++++|||||||||+++||+++|+.+ +||+|+|+.|++||++|| |++.+++.|+..+.. .+.. .++
T Consensus 85 ~~~~~~~iDLFsGiGGl~lGfe~aG~~~-v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~------~~~~-~~~- 155 (467)
T PRK10458 85 PHYAFRFIDLFAGIGGIRRGFEAIGGQC-VFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITL------SHKE-GVS- 155 (467)
T ss_pred cCCCceEEEeCcCccHHHHHHHHcCCEE-EEEEechHHHHHHHHHHcCCCCccceeccChhhCcc------cccc-ccc-
Confidence 4458999999999999999999999986 599999999999999998 555555433322100 0000 000
Q ss_pred hhHHHHHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCC-------CCcchhhhhHHHHHHHHHhhcCCcEEEEe
Q 000407 1194 SEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ-------STWSKVQCEMILAFLSFADYFQPRYFLLE 1266 (1558)
Q Consensus 1194 ~e~~el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~-------~~~~~~r~~Lv~~fl~~id~~rPk~flLE 1266 (1558)
..++...+. ..+| ++|+|+||||||+||.+|+.++ +...+.|+.|+++|+++|+.++|++||||
T Consensus 156 --~~~~~~~~~----~~~p---~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlE 226 (467)
T PRK10458 156 --DEEAAEHIR----QHIP---DHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLE 226 (467)
T ss_pred --hhhhhhhhh----ccCC---CCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEe
Confidence 001111111 1233 7999999999999999986432 11236789999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHhcCCcEEE---------EEEEecCCCCCCCCccEEEEEeecCCCCCC---CCCCCcccc
Q 000407 1267 NVRNFVSFNKGQTFRLTLASLLEMGYQVR---------FGILEAGAFGVSQSRKRAFIWAASPHDTLP---EWPEPMHVF 1334 (1558)
Q Consensus 1267 NV~g~ls~~~g~~f~~il~~L~~~GYqv~---------~~vLnA~~yGVPQsR~RvfIvaar~g~~lP---~~P~PtH~f 1334 (1558)
||+||+++++|.+|+.++..|.++||.|. +.+|||.+| |||+|+|+||||.+.+..++ .||.+.+
T Consensus 227 NV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~~~~f~~~~~~~-- 303 (467)
T PRK10458 227 NVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNLKADFTLRDISE-- 303 (467)
T ss_pred CcHhhhcccccHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCcccccCcccccccc--
Confidence 99999999999999999999999999995 689999999 99999999999999775432 1111110
Q ss_pred chhhhhhhcccccccccccccCCCCCCccccHHhHhcCCCCCCCCCCccccccCCCChhhHHHhHhcCccccchhhhhhc
Q 000407 1335 AAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEM 1414 (1558)
Q Consensus 1335 ~~~~l~~~l~~~~~~~~~~~~~~~~p~~~iTv~DaI~DLP~v~~g~~~~~~~y~~~p~s~~q~~ir~~~~~l~dH~~k~~ 1414 (1558)
..|....+++|.|.+-. + -.|.-.+..|- .+
T Consensus 304 -----------------------~~p~~~~~l~diL~~~~----~-----~ky~ls~~~~~-----------------~l 334 (467)
T PRK10458 304 -----------------------CYPAQRPTLAELLDPVV----D-----AKYILTPVLWK-----------------YL 334 (467)
T ss_pred -----------------------cCCCCCCCHHHhcCCCC----C-----cceeeCHHHHH-----------------HH
Confidence 01111234555543211 0 01211111121 00
Q ss_pred hHHHHHHhhcCCCCCCCCCCCCCccccccccCccccccccCCCCccccCCccccceecccCCCCCCccccCCCCCCCccc
Q 000407 1415 NELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGM 1494 (1558)
Q Consensus 1415 ~~l~l~R~~~Ip~~~G~dwr~Lp~~~v~l~~G~~~~l~p~~lp~~a~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g~ 1494 (1558)
...+..++. .|..|.- .++. ++. .+ ..-.....|+.|+|...++.+.-.+....++
T Consensus 335 ---~~~~~k~~~--~g~g~~~--------------~i~~---~~~-~~-~~~~t~~~ry~k~gs~~~i~~~~~~~~~~~~ 390 (467)
T PRK10458 335 ---YRYAKKHQA--KGNGFGY--------------GLVY---PNN-PQ-SVTRTLSARYYKDGSEILIDRGWDMALGEKD 390 (467)
T ss_pred ---HHHHhhccc--cCCCcce--------------eeee---cCC-CC-CcccccccccccCCCceeeeccccccccccc
Confidence 000001111 1222210 0100 000 00 0011222366666543332221111112234
Q ss_pred cccCC----CCccccHHHHHhcCCC--CCCceec--CCHHHHHHhcccCccHHHHHHHHHHHHHHHHh
Q 000407 1495 CFHPD----QDRILTVRECARSQGF--PDSYQFH--GSIQHKHRQIGNAVPPTLAFALGRKLKEAVES 1554 (1558)
Q Consensus 1495 ~lHP~----q~R~LTVRE~ARLQGF--PD~y~F~--Gs~~~~yrQIGNAVPppva~aIg~~L~~aL~~ 1554 (1558)
+.||. ..|.|||||||||||| ||+|.|. .+.+++|||+||||||||+++||+.|..+|..
T Consensus 391 ~~~~~~~~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~~~ 458 (467)
T PRK10458 391 FDDPENQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQ 458 (467)
T ss_pred ccccccccCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence 45664 4799999999999999 6666664 46699999999999999999999999998854
No 6
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=1e-45 Score=397.84 Aligned_cols=201 Identities=63% Similarity=1.033 Sum_probs=185.5
Q ss_pred eEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcc
Q 000407 930 FVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE 1009 (1558)
Q Consensus 930 f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~ 1009 (1558)
|+++|++|++||||||.|+.|++++.++++|++|||++++||+||||.+|++++++++.+..+++|+||||||||||+..
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~ 80 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPE 80 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcc
Confidence 68999999999999999999999888899999999999999999999999999988778889999999999999999887
Q ss_pred ccccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcccCCeEEEEEeecCCCCccccCCcccc-ccccCCCCc
Q 000407 1010 KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLPAHIK-LRYSSGSLD 1088 (1558)
Q Consensus 1010 ~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~~dd~Fyce~~YD~~~~~~~~lP~~~r-~~~~~~~~~ 1088 (1558)
.+|++|+||||||++++++|+++|+|||.|++..|++.+.++...+|.|||++.||+.+++|++||+|++ +.+++.+
T Consensus 81 ~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~~~~~~~~Ffc~~~Yd~~tg~f~~lP~~~~~~~~~~~~-- 158 (202)
T cd04708 81 KAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDAPVIFEHVFFCELLYDPAKGSLKQLPPNIKEEAYSTGA-- 158 (202)
T ss_pred cceecCceeEEEeccceeechhHcceEEEEEecCcchhhhccccCCCceEEEEEEcCCCCccCCCCchhccccccccc--
Confidence 7899999999999999999999999999999999999998877779999999999999999999999999 7777777
Q ss_pred hhhhhccCCCccccCcchhhhhhcCCCcccCCceeeccccCchHH
Q 000407 1089 SEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGL 1133 (1558)
Q Consensus 1089 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~kL~~lDLFAG~GGl 1133 (1558)
+.+.+||+||||+ +++..++.++...++.++|++||+|||||||
T Consensus 159 ~~~~~~k~kgkgk-~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 159 SDSALRKRKGKGK-GDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred cccccccCCCCCc-CccccccccccccccccccceeeeecccCCC
Confidence 6778899999998 6655555566667888999999999999996
No 7
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.97 E-value=1.3e-32 Score=276.35 Aligned_cols=122 Identities=30% Similarity=0.462 Sum_probs=111.3
Q ss_pred CEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcCCCCCceEeecccccccccccceeEE
Q 000407 761 GEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVV 840 (1558)
Q Consensus 761 g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~tad~rELFlsd~cdd~~l~~I~~K~~ 840 (1558)
|++|+|||||+|+++++++||||++|++|||+++|++||||||||||+|||||++++|+||||||+|++++|++|++||+
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~~~~~kEvFlsd~c~d~~l~~I~~Kv~ 80 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGETSDPLELFLVDECEDMALSSIHGKVN 80 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCcccccccCCCcEEEeecccCCcchHHheeeeE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC--CCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccce
Q 000407 841 VDIRSVP--WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFF 893 (1558)
Q Consensus 841 V~~~~~~--w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~ 893 (1558)
|+++.++ |.+. +|.+.+... ..+++.+||||+||+|+.++|+
T Consensus 81 V~~~~p~~~w~~~---~g~~~~~~~--------~~ddg~tffyq~~yd~~~arf~ 124 (124)
T cd04760 81 VIYKAPSENWSME---GGMDEEDEI--------FEDDGKTFFYQKWYDPECARFE 124 (124)
T ss_pred EEEeCCCcchhhh---cCCCCcccc--------ccCCCCeEEEEEeeChhhhccC
Confidence 9999985 9876 555554321 3467899999999999999995
No 8
>PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties []. A structure exists for the human cytosine specific DNA methyltransferase replication foci domain. ; PDB: 3AV6_A 3AV5_A 3AV4_A 3EPZ_B.
Probab=99.97 E-value=1.8e-31 Score=280.54 Aligned_cols=144 Identities=44% Similarity=0.713 Sum_probs=102.8
Q ss_pred CCCCcccccceEEECCCCCeeeeccccCCCCCCCceeEEEEEEeeecCCCCcccCCCCcccCCCCCCCCCCCCeeeeecC
Q 000407 417 DQLPRRMLHDWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGKMISDEGSGFCLDTDSSQCTSGVSGAQDAGGFPIYLSS 496 (1558)
Q Consensus 417 ~~~P~r~L~~f~~yd~~~~l~~le~~~~~~~~~~dv~lf~sG~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~gi~~~lg~ 496 (1558)
|++|+|+|+||+|||++|++||||+|||..+.+ +|+||+|+|++... |+++ +.+. .+....|++++||+
T Consensus 2 ~~~p~r~L~~f~~~d~~~~~~~le~l~~~~~~~----~~~sG~v~~~~~~~---~~~~-~~~~---~g~~~~g~~~~l~~ 70 (146)
T PF12047_consen 2 DDLPMRSLDDFSFYDSDGEPVSLELLPIEWNVD----LFASGVVKPIGLWG---DDEP-SPKE---KGVRDEGVRIRLGP 70 (146)
T ss_dssp SSS-EEEEEEEEEEETTSBB--STTSTTTTT------EEEEEEEEETT-----------SSTS----SEEEEC----ES-
T ss_pred CCCcceEEEEEEEEeCCCCEEeeeeccccCCCc----ccceEEecccCccc---ccCc-cccc---cCccCCCcccceec
Confidence 799999999999999999999999999975555 89999999864322 2222 1110 12335788999999
Q ss_pred cceEEEEeCCce-eEEEEEccceeEEeCCCCcchhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhhh
Q 000407 497 IKEWMIEFGSSM-IFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQTRVSRLSFTDVIKRLSEI 571 (1558)
Q Consensus 497 I~eW~I~~g~~~-~~I~i~T~~A~Y~L~~Ps~~Y~~~~~~~~~k~~~~~~vi~~L~~~~~~~~~s~~dll~~v~~~ 571 (1558)
|++|+|+++.++ +.|||+|++|||+|++||++|+|||++|++|++||+.|+++|+++++++++||+|+|++|.++
T Consensus 71 I~~W~i~~~~~~~~~i~i~T~~awY~L~kPs~~Y~~~y~~~~~~~~l~~~v~~~l~~~~~~~~~s~~d~l~~v~~~ 146 (146)
T PF12047_consen 71 IKEWWIDGGDDGPPIIWISTDYAWYRLMKPSKSYAPWYEPFLRKARLTVRVIHFLKKNPRASDLSYEDLLARVFRS 146 (146)
T ss_dssp ECEEEEE-SSSSS-EEEEEESS-EEEE-SB-TTTHHHHCCHHHHHHHHHHHHHHHHHHT---T--HHHHHHHHHH-
T ss_pred eeEEEEEecCCCccEEEEEECCcEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHHhcC
Confidence 999999975544 899999999999999999999999999999999999999999999899999999999999873
No 9
>PF12047 DNMT1-RFD: Cytosine specific DNA methyltransferase replication foci domain; InterPro: IPR022702 This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties []. A structure exists for the human cytosine specific DNA methyltransferase replication foci domain. ; PDB: 3AV6_A 3AV5_A 3AV4_A 3EPZ_B.
Probab=99.96 E-value=6.1e-30 Score=269.00 Aligned_cols=136 Identities=46% Similarity=0.767 Sum_probs=109.1
Q ss_pred CCCCCcccccceEeeCCCCCcccccccc---cccEEEEeeecccc---CCCcccccccccccc----ccccceeeeeccC
Q 000407 107 DGDRPNRRLNDFILHDENGLPQPLEMLE---IDDLFISGLILPLQ---ESSDREKEKGVRCEG----FGRIESWSISGYE 176 (1558)
Q Consensus 107 ~~~~~~~~l~~f~~~d~~g~~~p~~~~e---~~~l~~sg~~~p~~---~~~~~~~~~g~~~~~----~g~i~~w~i~g~~ 176 (1558)
+|++|+|+|++|+|||++|++||||+++ ++++|+||+++|++ ++.++.+++|++|++ +|||.+|+|+|++
T Consensus 1 ~~~~p~r~L~~f~~~d~~~~~~~le~l~~~~~~~~~~sG~v~~~~~~~~~~~~~~~~g~~~~g~~~~l~~I~~W~i~~~~ 80 (146)
T PF12047_consen 1 EDDLPMRSLDDFSFYDSDGEPVSLELLPIEWNVDLFASGVVKPIGLWGDDEPSPKEKGVRDEGVRIRLGPIKEWWIDGGD 80 (146)
T ss_dssp -SSS-EEEEEEEEEEETTSBB--STTSTTTTT--EEEEEEEEETT-------SSTS-SEEEEC----ES-ECEEEEE-SS
T ss_pred CCCCcceEEEEEEEEeCCCCEEeeeeccccCCCcccceEEecccCcccccCccccccCccCCCcccceeceeEEEEEecC
Confidence 3789999999999999999999999666 67999999999999 777888778999999 9999999999999
Q ss_pred CCceeEEEeccccccccccCccchhHHHHHHHHHHhHhHHHHHhhccCCCCCCCCCHHHHHHHHhhc
Q 000407 177 DGSPVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRS 243 (1558)
Q Consensus 177 ~g~~~i~~~t~~a~y~~~~p~~~y~~~~~~~~ek~~~~~~v~~~l~~~~~~~~~~~~e~ll~~v~~~ 243 (1558)
+|.++|||+|+.|.|.|+|||++|+++|+.|++|++||+.|+++|+++. |.++.||+|||++|.|+
T Consensus 81 ~~~~~i~i~T~~awY~L~kPs~~Y~~~y~~~~~~~~l~~~v~~~l~~~~-~~~~~s~~d~l~~v~~~ 146 (146)
T PF12047_consen 81 DGPPIIWISTDYAWYRLMKPSKSYAPWYEPFLRKARLTVRVIHFLKKNP-RASDLSYEDLLARVFRS 146 (146)
T ss_dssp SSS-EEEEEESS-EEEE-SB-TTTHHHHCCHHHHHHHHHHHHHHHHHHT----T--HHHHHHHHHH-
T ss_pred CCccEEEEEECCcEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHhhCc-ccccCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999997 77799999999999985
No 10
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.95 E-value=3.2e-28 Score=249.89 Aligned_cols=115 Identities=52% Similarity=0.893 Sum_probs=106.8
Q ss_pred cCEEEecCCeEEEecCCCC----------CCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcCCCCCceEeeccccc
Q 000407 760 HGEVVSLGSAVLVEVDELD----------QLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRD 829 (1558)
Q Consensus 760 ~g~~~~vGD~V~V~~~~~~----------~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~tad~rELFlsd~cdd 829 (1558)
+|..|+|||+|+|.+++++ .+|||++|++||++++|++||||||||||+|||||+.++++||||||+|++
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~~~~~~ElFLSd~c~~ 81 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGNYANERELFLTNECTC 81 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccccCCCceEEEeccccc
Confidence 6789999999999999977 589999999999999999999999999999999999999999999999999
Q ss_pred cccc----ccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCCC
Q 000407 830 LELQ----DIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV 897 (1558)
Q Consensus 830 ~~l~----~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp~ 897 (1558)
++++ +|++||.|++...+|+ ++++..|||++.|+++.++|++||.
T Consensus 82 ~~~~~~~~~I~~k~~V~~~~~~~~-----------------------~~~~~~F~r~syy~~e~~~F~~l~~ 130 (130)
T cd04712 82 LELDLLSTEIKGVHKVDWSGTPWG-----------------------KGLPEFFVRQSYYWPERGAFTSLKR 130 (130)
T ss_pred cccccccceeEEEEEEEEecCcCC-----------------------cCCCCEEEEEEEECccCCceEcCCC
Confidence 9999 9999999998877773 2346699999999999999999984
No 11
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=1.3e-26 Score=233.39 Aligned_cols=122 Identities=20% Similarity=0.458 Sum_probs=110.3
Q ss_pred ccccccccccccC-CCcceEEEEEEEEccCCCc-ccccCceEEEEEEeeccccCCc--cccccCCCceEEeecceeeeec
Q 000407 955 AEGETFKAGRNVG-LKPYVVCQLLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDISA--EKAYCSDIREVYYSEETHLIFV 1030 (1558)
Q Consensus 955 ~~~~~~~~g~N~~-~~Py~IgqI~eI~~~~~~~-k~~~~~~~vkVrwFyRPEDi~~--~~~~~~D~rELf~Sde~~~vpv 1030 (1558)
.+.++|++|+|++ ++||+||||++|.++++++ +.+..+++|+|+||||||||+. ..++++|+||||||+|++++|+
T Consensus 10 ~~~~~~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~ 89 (137)
T cd04711 10 RKSSDYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDF 89 (137)
T ss_pred hccccccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecCh
Confidence 3467899999986 8999999999999988876 7788899999999999999987 5679999999999999999999
Q ss_pred ceEeeeeEEeecCCCCC-CCCCc-ccCCeEEEEEeecCCCCccccCCc
Q 000407 1031 EAIAGKCEVRKKNDIPA-CNAPA-IFQHIFFCEHLHDPSKGSLKQLPA 1076 (1558)
Q Consensus 1031 ~~I~GKC~V~~~~d~~~-~~~~~-~~dd~Fyce~~YD~~~~~~~~lP~ 1076 (1558)
++|+|||.|++..+++. ...+. ..++.|||+..||.++++|+++|+
T Consensus 90 ~~I~GKC~V~~~~di~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 90 SAVQGRCTVEYGEDLPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred hhccceEEEEeccccchhHHHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 99999999999999985 44565 567999999999999999999884
No 12
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=4.9e-26 Score=230.67 Aligned_cols=119 Identities=22% Similarity=0.287 Sum_probs=103.8
Q ss_pred CEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCc---CCCCCceEeecccccccccccce
Q 000407 761 GEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGN---TANEREVFLANQCRDLELQDIKQ 837 (1558)
Q Consensus 761 g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~---tad~rELFlsd~cdd~~l~~I~~ 837 (1558)
|.+|++||+|+|.+++ ++++|||+|++||++.+|..||||||||||+||++|+ .++++|||||+++|++||+||.+
T Consensus 1 g~~~~lgD~V~v~~~~-~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~ 79 (122)
T cd04716 1 GITYNLGDDAYVQGGE-GEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLIS 79 (122)
T ss_pred CcEEEcCCEEEEECCC-CCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheee
Confidence 6789999999999997 5899999999999999999999999999999999997 46799999999999999999999
Q ss_pred eEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCCC
Q 000407 838 TVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV 897 (1558)
Q Consensus 838 K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp~ 897 (1558)
||+|+..+++-.... +. ....+++|||+|.|+..+++|.+||.
T Consensus 80 Kc~V~~~~~~~~~~~-----~~------------~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 80 KVKILQVPPNVGTKR-----KK------------PNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eeEEEEeCCCCCccc-----cc------------ccCCCceEEEeeEeccchhheEeCCC
Confidence 999998876432210 00 11236799999999999999999983
No 13
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.92 E-value=1.2e-25 Score=241.79 Aligned_cols=164 Identities=28% Similarity=0.410 Sum_probs=133.9
Q ss_pred CCceeeccccCchHHHHHHhhcCCc-EeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGIS-STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~-~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~ 1197 (1558)
++|++++|++|.|||-.+|+.|-+. .++.|+|+++.|.++|++| |++... +.-||
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-~h~~L~-------------k~~~I---------- 57 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-YHSNLV-------------KTRNI---------- 57 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-cccchh-------------hcccc----------
Confidence 5799999999999999999998775 3568999999999999999 544321 11222
Q ss_pred HHHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcC--CcEEEEeccccccccc
Q 000407 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQ--PRYFLLENVRNFVSFN 1275 (1558)
Q Consensus 1198 el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~r--Pk~flLENV~g~ls~~ 1275 (1558)
+.+.-++++.+ +.++|.-+||||+|...|+.+ +..|.|...+.+++.++-..+ |+|++||||+||-+.
T Consensus 58 ---~~lt~kefd~l----~~~m~lMSPpCQPfTRiG~q~--D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S- 127 (338)
T KOG0919|consen 58 ---QSLTVKEFDKL----QANMLLMSPPCQPFTRIGLQR--DTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESS- 127 (338)
T ss_pred ---ceeeHhhhhhc----ccceEeeCCCCCchhhhcccc--cccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhh-
Confidence 22344445555 689999999999999999844 446778888888888887665 999999999999764
Q ss_pred cchhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEee
Q 000407 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAA 1318 (1558)
Q Consensus 1276 ~g~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaa 1318 (1558)
++-...+..|+..||+.+.++|..-+||+|-+|-|.|.+|-
T Consensus 128 --~ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~Ryy~iAr 168 (338)
T KOG0919|consen 128 --QARNQFIESLENCGFHWREFILSPTQFNIPNSRYRYYCIAR 168 (338)
T ss_pred --hHHHHHHHHHHhcCchhhheeccccccCCCCcchheeehhh
Confidence 45667889999999999999999999999999999999873
No 14
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=2.7e-24 Score=221.88 Aligned_cols=124 Identities=23% Similarity=0.379 Sum_probs=109.4
Q ss_pred eEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCccc------ccCceEEEEEEeecc
Q 000407 930 FVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRA------EVKSTQVKVRRFFRP 1003 (1558)
Q Consensus 930 f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~------~~~~~~vkVrwFyRP 1003 (1558)
+..+|..|++||+|||.|+.+ ++||+||||++|+..++..+. +.+.++++|+|||||
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~-----------------~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp 67 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPP-----------------GEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRP 67 (135)
T ss_pred EccCCeEEeCCCEEEEecCCC-----------------CCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCH
Confidence 345899999999999999865 489999999999987765443 456789999999999
Q ss_pred ccCCccccccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcccCCeEEEEEeecCCCCccc
Q 000407 1004 DDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLK 1072 (1558)
Q Consensus 1004 EDi~~~~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~~dd~Fyce~~YD~~~~~~~ 1072 (1558)
+||+... .+|.||||||+|++++|+++|+|||.|++.++++++.++...+++|||+..||+.++.|.
T Consensus 68 ~Di~~~~--~~d~relf~S~h~d~~p~~si~gKC~V~~~~di~~l~~~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 68 RDISRRV--VADSRLLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred HHcCCcc--cCCceEEEEEeeEeeechHHEEeEEEEEEecccchhhhhccCCCEEEEEeeeCcchhhcc
Confidence 9997543 689999999999999999999999999999999988888878999999999999987654
No 15
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=7.6e-22 Score=209.31 Aligned_cols=125 Identities=24% Similarity=0.365 Sum_probs=107.4
Q ss_pred ceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcc----
Q 000407 934 TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE---- 1009 (1558)
Q Consensus 934 G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~---- 1009 (1558)
+..|+|||+|||.+.. ..||.||||.+|+.+ ..+.+.++|+|||||+||+..
T Consensus 1 ~~~yrvGD~Vy~~~~~------------------~~Py~I~rI~e~~~~------~~~~~~vkV~wfYRp~DI~~~~~~l 56 (164)
T cd04709 1 ANMYRVGDYVYFESSP------------------NNPYLIRRIEELNKT------ARGHVEAKVVCYYRRRDIPDSLYQL 56 (164)
T ss_pred CcEEecCCEEEEECCC------------------CCCCEEEEEEEEEeC------CCCCEEEEEEEEEChhHccchhhhh
Confidence 3579999999999873 268999999999833 346889999999999998643
Q ss_pred ------------------ccccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcccCCeEEEEEeecCCCCcc
Q 000407 1010 ------------------KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSL 1071 (1558)
Q Consensus 1010 ------------------~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~~dd~Fyce~~YD~~~~~~ 1071 (1558)
.++..+.||||+|++.+++|+++|+|||.|++.++++.+..+...+|+|||+..|||.+++|
T Consensus 57 ~~~~r~~~~~~~~~~~~~~~~~~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~~~~~d~Ff~~~~YDP~~k~l 136 (164)
T cd04709 57 ADQHRRELEEKSDDLTPKQRHQLRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTL 136 (164)
T ss_pred cccccccccccccccchhhhhccCcceeEEecccccccHHHeeeeEEEEEehhhhhhhhccCCCCEEEEEEEECCCCCee
Confidence 13456899999999999999999999999999999998887777899999999999999998
Q ss_pred ccCCccccccc
Q 000407 1072 KQLPAHIKLRY 1082 (1558)
Q Consensus 1072 ~~lP~~~r~~~ 1082 (1558)
..-..+||...
T Consensus 137 ~~~~geirvg~ 147 (164)
T cd04709 137 LADQGEIRVGP 147 (164)
T ss_pred cccceeEEecC
Confidence 87777777643
No 16
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=5.9e-22 Score=201.96 Aligned_cols=117 Identities=22% Similarity=0.300 Sum_probs=97.9
Q ss_pred CEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcC--CCCCceEeeccccccccccccee
Q 000407 761 GEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT--ANEREVFLANQCRDLELQDIKQT 838 (1558)
Q Consensus 761 g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~t--ad~rELFlsd~cdd~~l~~I~~K 838 (1558)
|++|+|||||+|.+++...+||||+|++||++.+|.+|||++|||||+||++|+. ++++|||+|++.+++|+++|.+|
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~gk 80 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIEHK 80 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhCcc
Confidence 6789999999999988668899999999999999999999999999999999976 58999999999999999999999
Q ss_pred EEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccc
Q 000407 839 VVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892 (1558)
Q Consensus 839 ~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F 892 (1558)
|.|+..+.+-....... .....+..|+|++.|+|....+
T Consensus 81 c~V~~~~ey~~~~~~~~---------------~~~~~~d~~~Ce~~yn~~~~~~ 119 (121)
T cd04714 81 CYVLTFAEYERLARVKK---------------KPQDGVDFYYCAGTYNPDTGML 119 (121)
T ss_pred cEEEehhHheecccccC---------------CCCcCCCEEEEeccCCCCcCcc
Confidence 99997765432221100 0011255999999999988654
No 17
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.85 E-value=1.7e-21 Score=197.29 Aligned_cols=117 Identities=25% Similarity=0.395 Sum_probs=101.3
Q ss_pred EEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCc--eEEEEEEEeeccccccCcCCCCCceEeecccccccccccceeE
Q 000407 762 EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC--KLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTV 839 (1558)
Q Consensus 762 ~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~--kmfh~~WF~rg~eTvLg~tad~rELFlsd~cdd~~l~~I~~K~ 839 (1558)
++|++||||||.++++..+++|++|++||++.++. +|++++||+||+||.++..++++|||+|++|+++|+++|.|||
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~~~~~~~Elf~s~~~~~~~~~~I~gkc 80 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTSLGKTFSPRELFLSDHCDDIPVESIRGKC 80 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGSTTGGHSCTTEEEEEEEEEEEEGGGEEEEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccccccccCCCCEEEEECcEeEEehhhEEeee
Confidence 57999999999999988899999999999999888 9999999999999988888999999999999999999999999
Q ss_pred EEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCC
Q 000407 840 VVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP 896 (1558)
Q Consensus 840 ~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp 896 (1558)
.|++............ . .+..|||++.|++..++|.++|
T Consensus 81 ~V~~~~~~~~~~~~~~-----------------~-~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 81 NVLHLEDYEQARPYGK-----------------E-EPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEHHHHTTGCCHCH-----------------H-TTTEEEEEEEEETTTTEEEE-S
T ss_pred EEEECCcccccccccc-----------------C-CCCEEEEEEEEeCCcCEEeCCC
Confidence 9998765432221000 1 2569999999999999999987
No 18
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.85 E-value=5.8e-21 Score=200.53 Aligned_cols=129 Identities=12% Similarity=0.127 Sum_probs=109.5
Q ss_pred cccceeEEEEEcCEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCc-----CCCCCceEe
Q 000407 749 SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGN-----TANEREVFL 823 (1558)
Q Consensus 749 ~~~~~Y~~a~v~g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~-----tad~rELFl 823 (1558)
.++.+|+++.++|.+|+|||||+|.+++. .+|||++|+.||++.+|.+|+.++||||++||.... .++++|||+
T Consensus 6 ~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~-~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~ 84 (146)
T cd04713 6 KKKCHYTSFEKDGNKYRLEDCVLLVPEDD-QKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFY 84 (146)
T ss_pred cceeeeeeEEECCEEEECCCEEEEeCCCC-CCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEE
Confidence 45789999999999999999999999874 889999999999999999999999999999998632 246899999
Q ss_pred ecccccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCCCC
Q 000407 824 ANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVD 898 (1558)
Q Consensus 824 sd~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp~~ 898 (1558)
|++.+++|+++|.+||+|+..+.+..... . ....+|||+..||+..++|..|-..
T Consensus 85 S~~~d~~~~~~I~gkc~V~~~~~~~~~~~----~----------------~~~~~F~cr~~yD~~~~~~~~~~~~ 139 (146)
T cd04713 85 SFHRDEVPAESVLHPCKVAFVPKGKQIPL----R----------------KGHSGFIVRRVYDNVNKKLWKLTDQ 139 (146)
T ss_pred eCCCCcCCHHHCcceeEEEECCccccCCc----c----------------CCCCeEEEEEEEcCCCCcEeecccc
Confidence 99999999999999999997654221110 0 0134899999999999999998643
No 19
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=5.5e-21 Score=195.08 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=100.0
Q ss_pred CEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcC--CCCCceEeeccccccccccccee
Q 000407 761 GEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT--ANEREVFLANQCRDLELQDIKQT 838 (1558)
Q Consensus 761 g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~t--ad~rELFlsd~cdd~~l~~I~~K 838 (1558)
|..|++||||+|.+++...+|||++|+.||++.+|.++|+|+||+||+||+++.+ +.++|||||++++++||++|.+|
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~~k 80 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIVGK 80 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhcCe
Confidence 5789999999999988658899999999999999999999999999999998775 56999999999999999999999
Q ss_pred EEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCC
Q 000407 839 VVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP 896 (1558)
Q Consensus 839 ~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp 896 (1558)
|.|+..+.+-...+ .+.. ....|+|++.|++..+.|..+.
T Consensus 81 c~Vl~~~~y~~~~p--~~~~----------------~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 81 CAVMDVKDYIKGRP--TEIS----------------EEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred eEEEehHHHhcCCC--CCCC----------------CCCEEEEeEEECcccccEeccc
Confidence 99997765432221 0010 1237999999999999999874
No 20
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.84 E-value=7.2e-21 Score=192.91 Aligned_cols=118 Identities=27% Similarity=0.356 Sum_probs=103.1
Q ss_pred CEEEecCCeEEEecCCC--CCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcC--CCCCceEeecccccccccccc
Q 000407 761 GEVVSLGSAVLVEVDEL--DQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT--ANEREVFLANQCRDLELQDIK 836 (1558)
Q Consensus 761 g~~~~vGD~V~V~~~~~--~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~t--ad~rELFlsd~cdd~~l~~I~ 836 (1558)
|.+|++||+|+|.+++. ..++|||+|++||++.+|.+|+|++|||||+||.++.. ++++|||+|++|+++++++|.
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I~ 80 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESII 80 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhccccccccccceeEEecCccccCHHHhc
Confidence 67899999999999874 47889999999999999999999999999999999988 899999999999999999999
Q ss_pred eeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeC
Q 000407 837 QTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFIL 895 (1558)
Q Consensus 837 ~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~l 895 (1558)
+||.|++....+....+ .....+..|||++.||+.++.|..+
T Consensus 81 gkc~V~~~~~~~~~~~~-----------------~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 81 GKCKVLFVSEFEGLKQR-----------------PNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred cccEEEechHhhccccc-----------------cccCCCCeEEEEEEECcCcceEEeC
Confidence 99999988775533210 1122356999999999999999876
No 21
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.83 E-value=1.4e-20 Score=190.54 Aligned_cols=117 Identities=34% Similarity=0.464 Sum_probs=101.1
Q ss_pred EEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCc-eEEEEEEEeeccccccCcC--CCCCceEeecccccccccccceeE
Q 000407 763 VVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC-KLFHGIIMQRGSHTVLGNT--ANEREVFLANQCRDLELQDIKQTV 839 (1558)
Q Consensus 763 ~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~-kmfh~~WF~rg~eTvLg~t--ad~rELFlsd~cdd~~l~~I~~K~ 839 (1558)
.|++||+|+|.+++.+++++||+|+.||++.+|. +|+|+|||+||+||.++.. ++++|||+|++|+++++++|.+||
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~kc 80 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIGKC 80 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeeeEE
Confidence 3789999999999877899999999999999998 8999999999999999886 579999999999999999999999
Q ss_pred EEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCC
Q 000407 840 VVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILP 896 (1558)
Q Consensus 840 ~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp 896 (1558)
.|+..+..+...... ....+..|||++.|++.+++|.++|
T Consensus 81 ~V~~~~~~~~~~~~~-----------------~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 81 NVLSKSDYPGLRPEG-----------------KIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEcchhccccccc-----------------CCCCCCeEEEEEEEccccCcccCCC
Confidence 999887754332100 0012569999999999999999876
No 22
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=4.9e-20 Score=193.57 Aligned_cols=125 Identities=23% Similarity=0.319 Sum_probs=102.1
Q ss_pred ccccceEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccc
Q 000407 925 HSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPD 1004 (1558)
Q Consensus 925 ~~~~~f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPE 1004 (1558)
....+|.++|++|+|||+|||.|+.. .+|| ||+|.+||... ++..+|+|+|||||+
T Consensus 9 ~~y~s~~~dg~~y~vgD~Vlv~~~~~-----------------~~py-I~~I~~i~~~~------~~~~~v~V~WFyRpe 64 (146)
T cd04713 9 CHYTSFEKDGNKYRLEDCVLLVPEDD-----------------QKPY-IAIIKDIYKQE------EGSLKLEVQWLYRPE 64 (146)
T ss_pred eeeeeEEECCEEEECCCEEEEeCCCC-----------------CCCE-EEEEEEEEEcC------CCCEEEEEEeeECHH
Confidence 34568999999999999999998742 3676 99999999442 357899999999999
Q ss_pred cCCcccc---ccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcccCCeEEEEEeecCCCCccccC
Q 000407 1005 DISAEKA---YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074 (1558)
Q Consensus 1005 Di~~~~~---~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~~dd~Fyce~~YD~~~~~~~~l 1074 (1558)
|+..... ..++.||||+|++.+.+|+++|.|||.|+...+....... ...+.|||++.||..+++|.+|
T Consensus 65 Ei~~~~~~~~~~~~~~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~~~~~-~~~~~F~cr~~yD~~~~~~~~~ 136 (146)
T cd04713 65 EIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVPKGKQIPLR-KGHSGFIVRRVYDNVNKKLWKL 136 (146)
T ss_pred HhccccccccccCCCCeEEEeCCCCcCCHHHCcceeEEEECCccccCCcc-CCCCeEEEEEEEcCCCCcEeec
Confidence 9975432 3468999999999999999999999999987655433322 2467899999999999998876
No 23
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.82 E-value=5.3e-20 Score=186.85 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=100.2
Q ss_pred ceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCccc-cc
Q 000407 934 TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK-AY 1012 (1558)
Q Consensus 934 G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~-~~ 1012 (1558)
|+.|++||+|||.++.. +|.+||+|.+||... ++..+++|||||||+|+.... +.
T Consensus 1 g~~~~lgD~V~v~~~~~------------------~~~yi~rI~~i~e~~------~g~~~~~v~WyyRpeet~~~r~~~ 56 (122)
T cd04716 1 GITYNLGDDAYVQGGEG------------------EEPFICKITEFFEGT------DGKTYFTAQWFYRAEDTVIERQAT 56 (122)
T ss_pred CcEEEcCCEEEEECCCC------------------CCCEEEEEEEEEEcC------CCceEEEEEEEEcHHHhccccccc
Confidence 68899999999999842 455699999999443 456789999999999987653 56
Q ss_pred cCCCceEEeecceeeeecceEeeeeEEeecCCCCCC--CCCcccCCeEEEEEeecCCCCccccCCc
Q 000407 1013 CSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPAC--NAPAIFQHIFFCEHLHDPSKGSLKQLPA 1076 (1558)
Q Consensus 1013 ~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~--~~~~~~dd~Fyce~~YD~~~~~~~~lP~ 1076 (1558)
.+|.||||+|++.+++|+++|+|||.|++.+..... ......++.|||++.|+..-.+|+.||+
T Consensus 57 ~~~~rEvFlS~~~D~~pl~~I~~Kc~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 57 NHDKKRVFYSEIKNDNPLDCLISKVKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred cCCCceEEEecccCccchhheeeeeEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCCC
Confidence 899999999999999999999999999998877655 3344557889999999999988988873
No 24
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.81 E-value=9.8e-20 Score=192.74 Aligned_cols=109 Identities=24% Similarity=0.108 Sum_probs=96.7
Q ss_pred CceEEccccccccccceeEEEEEcCEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCC--CceEEEEEEEeeccccccCc
Q 000407 737 KEITWEGECVRKSGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATG--GCKLFHGIIMQRGSHTVLGN 814 (1558)
Q Consensus 737 ~~i~W~Gep~~~~~~~~Y~~a~v~g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~--g~kmfh~~WF~rg~eTvLg~ 814 (1558)
++-.|.|+|.++.++.||+++.++|.+|+|||||+|.+++ .+||||+|..||++.+ |.+|||++|||||+||+.+.
T Consensus 3 ~~~~~~g~~~~~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~--~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~ 80 (159)
T cd04715 3 KWGVKRGEGGKKKDGQFYRSFTYDGVEYRLYDDVYVHNGD--SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMEL 80 (159)
T ss_pred ccceecccccccCCceEEEEEEECCEEEeCCCEEEEeCCC--CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhcccc
Confidence 3557999999996667999999999999999999999854 7899999999999876 99999999999999998533
Q ss_pred ----CCCCCceEeeccc-----ccccccccceeEEEEEecCC
Q 000407 815 ----TANEREVFLANQC-----RDLELQDIKQTVVVDIRSVP 847 (1558)
Q Consensus 815 ----tad~rELFlsd~c-----dd~~l~~I~~K~~V~~~~~~ 847 (1558)
.+.++|||||+++ ++|||++|.+||.|+....+
T Consensus 81 ~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey 122 (159)
T cd04715 81 KGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISED 122 (159)
T ss_pred ccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHh
Confidence 4678999999875 77999999999999987753
No 25
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.81 E-value=1e-19 Score=184.20 Aligned_cols=118 Identities=36% Similarity=0.541 Sum_probs=98.1
Q ss_pred eEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCccccccC
Q 000407 935 AEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCS 1014 (1558)
Q Consensus 935 ~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~~~ 1014 (1558)
++|++||||||.++.. ..|+.||||.+||...... ...+++|+|||||+||.. ....
T Consensus 1 ~~~~vGD~V~v~~~~~-----------------~~~~~v~~I~~i~~~~~~~----~~~~~~v~Wf~rp~d~~~--~~~~ 57 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDP-----------------PEPPYVARIEEIWEDKDGN----KEKMVKVRWFYRPEDTSL--GKTF 57 (119)
T ss_dssp EEEETTSEEEEECTST-----------------TSEEEEEEEEEEEEETTTS----EEEEEEEEEEEEGGGSTT--GGHS
T ss_pred CEEeCCCEEEEeCCCC-----------------CCCCEEEEEEEEEcCCCCC----EEEEEEEEEeECcccccc--cccC
Confidence 5899999999999852 3678899999999554421 358999999999999932 3344
Q ss_pred CCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcc-cCCeEEEEEeecCCCCccccCC
Q 000407 1015 DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI-FQHIFFCEHLHDPSKGSLKQLP 1075 (1558)
Q Consensus 1015 D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~-~dd~Fyce~~YD~~~~~~~~lP 1075 (1558)
+.||||+|++.+++|+++|.|||.|++..++........ .+++|||++.||+.+++|.++|
T Consensus 58 ~~~Elf~s~~~~~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 58 SPRELFLSDHCDDIPVESIRGKCNVLHLEDYEQARPYGKEEPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp CTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTGCCHCHHTTTEEEEEEEEETTTTEEEE-S
T ss_pred CCCEEEEECcEeEEehhhEEeeeEEEECCccccccccccCCCCEEEEEEEEeCCcCEEeCCC
Confidence 559999999999999999999999999988876655432 7899999999999999999886
No 26
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.80 E-value=1.4e-19 Score=184.81 Aligned_cols=118 Identities=24% Similarity=0.289 Sum_probs=100.7
Q ss_pred ceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcccccc
Q 000407 934 TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013 (1558)
Q Consensus 934 G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~~ 1013 (1558)
|..|++||+|||.++... ..|| ||+|.+||.. .++..+++|+|||||+||.+.....
T Consensus 1 g~~~~vGD~V~v~~~~~~----------------~~~~-i~~I~~i~~~------~~g~~~~~~~Wf~rP~et~~~~~~~ 57 (121)
T cd04717 1 GLQYRVGDCVYVANPEDP----------------SKPI-IFRIERLWKD------EDGEKFFFGCWFYRPEETFHEPTRK 57 (121)
T ss_pred CCEEECCCEEEEeCCCCC----------------CCCE-EEEEeEEEEC------CCCCEEEEEEEEeChHHccCCCccc
Confidence 678999999999987320 2455 9999999943 3367899999999999998777778
Q ss_pred CCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCC-cccCCeEEEEEeecCCCCccccC
Q 000407 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP-AIFQHIFFCEHLHDPSKGSLKQL 1074 (1558)
Q Consensus 1014 ~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~-~~~dd~Fyce~~YD~~~~~~~~l 1074 (1558)
+..||||+|.+.+++|+++|+|||.|+...++.+.++. ...+|+|+|++.||+..+.|+++
T Consensus 58 ~~~~Evfls~~~d~~~~~~I~~kc~Vl~~~~y~~~~p~~~~~~dvy~ce~~y~~~~~~~~~~ 119 (121)
T cd04717 58 FYKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGRPTEISEEDVYVCESRYNESAKSFKKI 119 (121)
T ss_pred cccCceEEcCccccccHHHhcCeeEEEehHHHhcCCCCCCCCCCEEEEeEEECcccccEecc
Confidence 89999999999999999999999999999988776653 34569999999999999888765
No 27
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.78 E-value=4.2e-19 Score=181.12 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=95.4
Q ss_pred ceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcccccc
Q 000407 934 TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013 (1558)
Q Consensus 934 G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~~ 1013 (1558)
|+.|++||+|||.++.. ...|| ||+|.+||.. .++..+++|+|||||+||.+.....
T Consensus 1 ~~~~~vGD~V~v~~~~~----------------~~~py-IgrI~~i~e~------~~g~~~~~v~WfyrPeEt~~~~~~~ 57 (121)
T cd04714 1 KEIIRVGDCVLFKSPGR----------------PSLPY-VARIESLWED------PEGNMVVRVKWYYRPEETKGGRKPN 57 (121)
T ss_pred CCEEEcCCEEEEeCCCC----------------CCCCE-EEEEEEEEEc------CCCCEEEEEEEEEcHHHccCccccc
Confidence 67899999999998742 02465 9999999943 2367799999999999998776677
Q ss_pred CCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCC----cccCCeEEEEEeecCCCCc
Q 000407 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP----AIFQHIFFCEHLHDPSKGS 1070 (1558)
Q Consensus 1014 ~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~----~~~dd~Fyce~~YD~~~~~ 1070 (1558)
++.||||+|++.+++|+++|.|||.|+..+++.+.... ....++|+|++.||+...-
T Consensus 58 ~~~~EvF~S~~~d~~~~~~I~gkc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~~ 118 (121)
T cd04714 58 HGEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTGM 118 (121)
T ss_pred CCCCceEecCCcccccHHHhCcccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcCc
Confidence 99999999999999999999999999999888665532 3567999999999998753
No 28
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.77 E-value=1.1e-18 Score=180.51 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=99.7
Q ss_pred EEEcCEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCc------------eEEEEEEEeeccccccCcCCCCCceEee
Q 000407 757 AIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGC------------KLFHGIIMQRGSHTVLGNTANEREVFLA 824 (1558)
Q Consensus 757 a~v~g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~------------kmfh~~WF~rg~eTvLg~tad~rELFls 824 (1558)
+..+|.+|++||+|||.++++++|.|||+|+.||...++. .+|+++|||||+|+..+..+|++|||+|
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~~~d~relf~S 84 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRVVADSRLLYAS 84 (135)
T ss_pred EccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcccCCceEEEEE
Confidence 4568999999999999999999999999999999965443 5899999999999876667999999999
Q ss_pred cccccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCcccee
Q 000407 825 NQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFI 894 (1558)
Q Consensus 825 d~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~ 894 (1558)
+|++.+|+++|.|||+|.++.+.- .+ ++. ...+..|||..+|||...+|.+
T Consensus 85 ~h~d~~p~~si~gKC~V~~~~di~------------~l-----~~~--~~~~~~Fyf~~lyD~~~~r~~~ 135 (135)
T cd04710 85 MHSDICPIGSVRGKCTVRHRDQIP------------DL-----EEY--KKRPNHFYFDQLFDRYILRYYD 135 (135)
T ss_pred eeEeeechHHEEeEEEEEEecccc------------hh-----hhh--ccCCCEEEEEeeeCcchhhccC
Confidence 999999999999999999886421 00 011 1126799999999999999863
No 29
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.77 E-value=1.7e-18 Score=175.50 Aligned_cols=117 Identities=38% Similarity=0.638 Sum_probs=99.7
Q ss_pred EEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCc-eEEEEEEeeccccCCccccccC
Q 000407 936 EYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKS-TQVKVRRFFRPDDISAEKAYCS 1014 (1558)
Q Consensus 936 ~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~-~~vkVrwFyRPEDi~~~~~~~~ 1014 (1558)
.|++||+|||.++.. .+|+.||+|.+||.... +. .+++|+|||||+|+.+.....+
T Consensus 1 ~~~vgd~V~v~~~~~-----------------~~~~~i~~I~~i~~~~~------~~~~~~~v~Wf~rp~e~~~~~~~~~ 57 (120)
T smart00439 1 TIRVGDFVLVEPDDA-----------------DEPYYIGRIEEIFETKK------NSEKMVRVRWFYRPEETVLEKAALF 57 (120)
T ss_pred CcccCCEEEEeCCCC-----------------CCCCEEEEEEEEEECCC------CCEEEEEEEEEEChhhccccccccC
Confidence 489999999998842 26788999999995533 34 7999999999999987766678
Q ss_pred CCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcc--cCCeEEEEEeecCCCCccccCC
Q 000407 1015 DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAI--FQHIFFCEHLHDPSKGSLKQLP 1075 (1558)
Q Consensus 1015 D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~--~dd~Fyce~~YD~~~~~~~~lP 1075 (1558)
+.||||+|++.+++|+++|.|||.|++..++........ .++.|||++.||..++.|.++|
T Consensus 58 ~~~Elf~s~~~~~i~~~~I~~kc~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 58 DKNEVFLSDEYDTVPLSDIIGKCNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred CCcceEEEccCccCChHHeeeEEEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 999999999999999999999999999998866554333 5799999999999999898775
No 30
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.76 E-value=1.5e-18 Score=176.01 Aligned_cols=120 Identities=30% Similarity=0.434 Sum_probs=101.2
Q ss_pred ceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcccccc
Q 000407 934 TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013 (1558)
Q Consensus 934 G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~~ 1013 (1558)
|.+|++||+|||.++... .+.|+.||+|.+||... ++..+++|+|||||+||.+.....
T Consensus 1 g~~y~vgd~V~v~~~~~~---------------~~~~~~i~~I~~i~~~~------~~~~~~~v~wf~rp~e~~~~~~~~ 59 (123)
T cd04370 1 GITYEVGDSVYVEPDDSI---------------KSDPPYIARIEELWEDT------NGSKQVKVRWFYRPEETPKGLSPF 59 (123)
T ss_pred CCEEecCCEEEEecCCcC---------------CCCCCEEEEEeeeeECC------CCCEEEEEEEEEchhHhccccccc
Confidence 689999999999997431 23567799999999443 367899999999999998766667
Q ss_pred CCCceEEeecceeeeecceEeeeeEEeecCCCCCCC--CCcccCCeEEEEEeecCCCCccccC
Q 000407 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACN--APAIFQHIFFCEHLHDPSKGSLKQL 1074 (1558)
Q Consensus 1014 ~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~--~~~~~dd~Fyce~~YD~~~~~~~~l 1074 (1558)
++.||||+|++.+++|+++|.|||.|++..++.... .....++.|||++.||+.+++|+++
T Consensus 60 ~~~~Elf~s~~~~~i~v~~I~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 60 ALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred cccceeEEecCccccCHHHhccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeC
Confidence 899999999999999999999999999998776553 2345678999999999998888764
No 31
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.71 E-value=1.3e-17 Score=171.78 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=91.0
Q ss_pred EEcCEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcC---CCCCceEeecccccccccc
Q 000407 758 IVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT---ANEREVFLANQCRDLELQD 834 (1558)
Q Consensus 758 ~v~g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~t---ad~rELFlsd~cdd~~l~~ 834 (1558)
+.||.+|++||||+|.+++ ..+|||+|+.||++.+|.+|++|+||+|++||..+.. +.++|||||++-+++|+++
T Consensus 2 ~r~~~~i~vGD~V~v~~~~--~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~ 79 (130)
T cd04721 2 CRNGVTISVHDFVYVLSEE--EDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVEC 79 (130)
T ss_pred ccCCEEEECCCEEEEeCCC--CCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHH
Confidence 4689999999999999876 5679999999999999999999999999999988643 7799999999999999999
Q ss_pred cceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCC
Q 000407 835 IKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPE 888 (1558)
Q Consensus 835 I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~ 888 (1558)
|.+||.|+..+.+-.. .. +....-...+|+|+..|+-.
T Consensus 80 I~gk~~Vls~~~y~k~---------------~~-~~~~~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 80 IDGLATVLTREHYEKF---------------QS-VPKNSSELQAYFCYRQIDNN 117 (130)
T ss_pred eeeeeEECCHHHHhhh---------------hc-cccCccccccEEEEEEecCC
Confidence 9999999944332100 00 00000113499999999986
No 32
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.71 E-value=3e-17 Score=174.43 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=93.8
Q ss_pred EEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccC------------------------cCCC
Q 000407 762 EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLG------------------------NTAN 817 (1558)
Q Consensus 762 ~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg------------------------~tad 817 (1558)
.+|+|||||||.+. ++.|.+|++|++||++++|..+++++||||++|+... ...+
T Consensus 2 ~~yrvGD~Vy~~~~-~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd04709 2 NMYRVGDYVYFESS-PNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLR 80 (164)
T ss_pred cEEecCCEEEEECC-CCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccC
Confidence 58999999999998 4777779999999999999999999999999997321 0137
Q ss_pred CCceEeecccccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeC
Q 000407 818 EREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFIL 895 (1558)
Q Consensus 818 ~rELFlsd~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~l 895 (1558)
+||||+|++-+.+|+++|.|||.|+.....-... + -...+..|||...|||.+.+|.+-
T Consensus 81 ~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~-----------------~--~~~~~d~Ff~~~~YDP~~k~l~~~ 139 (164)
T cd04709 81 HRELFLSRQVETLPATHIRGKCSVTLLNDTESAR-----------------S--YLAREDTFFYSLVYDPEQKTLLAD 139 (164)
T ss_pred cceeEEecccccccHHHeeeeEEEEEehhhhhhh-----------------h--ccCCCCEEEEEEEECCCCCeeccc
Confidence 9999999999999999999999999876532110 0 011245999999999999999863
No 33
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.70 E-value=4.4e-17 Score=176.84 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=98.5
Q ss_pred EEcCEEEecCCeEEEecCC-----------------CCCCCeEEEEEEEeeeCCC------ceEEEEEEEeeccccccCc
Q 000407 758 IVHGEVVSLGSAVLVEVDE-----------------LDQLPVIYFVEYMFEATGG------CKLFHGIIMQRGSHTVLGN 814 (1558)
Q Consensus 758 ~v~g~~~~vGD~V~V~~~~-----------------~~~~p~I~~Ie~m~e~~~g------~kmfh~~WF~rg~eTvLg~ 814 (1558)
+++|.+|+|||+|||.|+- ...+.+||+|.+||+..++ ..+|++||||||+||....
T Consensus 2 ~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~~ 81 (202)
T cd04708 2 VYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPEK 81 (202)
T ss_pred cCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCccc
Confidence 5789999999999999981 1235569999999997666 6699999999999996633
Q ss_pred C--CCCCceEeecccccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccc
Q 000407 815 T--ANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAF 892 (1558)
Q Consensus 815 t--ad~rELFlsd~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F 892 (1558)
. ++.+|||+|++-+++|+++|.|||.|+...+.- . ... ....+..|||+..|++.++.|
T Consensus 82 ~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~-~------~~~------------~~~~~~~Ffc~~~Yd~~tg~f 142 (202)
T cd04708 82 AYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLP-D------SDA------------PVIFEHVFFCELLYDPAKGSL 142 (202)
T ss_pred ceecCceeEEEeccceeechhHcceEEEEEecCcch-h------hhc------------cccCCCceEEEEEEcCCCCcc
Confidence 2 689999999999999999999999999665410 0 000 011256999999999999999
Q ss_pred eeCCCCC
Q 000407 893 FILPVDS 899 (1558)
Q Consensus 893 ~~lp~~~ 899 (1558)
+.||...
T Consensus 143 ~~lP~~~ 149 (202)
T cd04708 143 KQLPPNI 149 (202)
T ss_pred CCCCchh
Confidence 9999553
No 34
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.65 E-value=3e-16 Score=161.76 Aligned_cols=114 Identities=25% Similarity=0.372 Sum_probs=94.3
Q ss_pred eEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcc
Q 000407 930 FVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE 1009 (1558)
Q Consensus 930 f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~ 1009 (1558)
|.-+|+++++||||||.++. .+|| ||+|.+||.. .++..+++|+||+||+++.+.
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~------------------~~~~-va~Ie~i~ed------~~g~~~v~v~WF~~p~E~~~~ 55 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE------------------EDRY-VAYIEDLYED------KKGSKMVKVRWFHTTDEVGAA 55 (130)
T ss_pred CccCCEEEECCCEEEEeCCC------------------CCcE-EEEEEEEEEc------CCCCEEEEEEEecCHHHhccc
Confidence 45689999999999999873 1565 9999999944 235679999999999999875
Q ss_pred cccc-CCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCc---ccCCeEEEEEeecCCC
Q 000407 1010 KAYC-SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPA---IFQHIFFCEHLHDPSK 1068 (1558)
Q Consensus 1010 ~~~~-~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~---~~dd~Fyce~~YD~~~ 1068 (1558)
.... +..||||+|++.+++|+++|.|||.|+..+++..+.... ...+.|+|+..||...
T Consensus 56 ~~~~~~~~~EvFlS~~~d~i~~~~I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~~ 118 (130)
T cd04721 56 LSPDSVNPREIFLSPNLQVISVECIDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNK 118 (130)
T ss_pred cCCCCCCCCeEEEcCCccccchHHeeeeeEECCHHHHhhhhccccCccccccEEEEEEecCCC
Confidence 4444 789999999999999999999999999988887655421 3367899999998763
No 35
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.64 E-value=2.1e-17 Score=170.35 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcCC--CCCceEeecccccccccccceeEEEEEecCCCCcccccccc
Q 000407 780 LPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTA--NEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIA 857 (1558)
Q Consensus 780 ~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~ta--d~rELFlsd~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~ 857 (1558)
.+||++|+.||++. |..||+|+|||||+||++|++. ..+||||||+.+++++++|.+||.|+..+.+... ++.
T Consensus 52 ~~~vArIekiW~~~-G~~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~----e~~ 126 (148)
T cd04718 52 DLWLARIEKLWEEN-GTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDA----SND 126 (148)
T ss_pred chHHHHHHHHHhcc-CceEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHcccc----cCC
Confidence 57999999999986 9999999999999999999984 5899999999999999999999999966554321 111
Q ss_pred chhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeC
Q 000407 858 NADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFIL 895 (1558)
Q Consensus 858 ~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~l 895 (1558)
. ..+|||++.|+...++|+.+
T Consensus 127 g-----------------~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 127 G-----------------DDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred C-----------------CceEEEEEEEhhhcCceeec
Confidence 1 23899999999999999875
No 36
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.64 E-value=5.9e-17 Score=167.03 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=107.1
Q ss_pred eeCCCCCCCCCcccccccccccccccccceeeccccceEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcce
Q 000407 893 FILPVDSMGLGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYV 972 (1558)
Q Consensus 893 ~~lp~~~~~~~~~~C~sC~~~e~~~~ke~~~v~~~~~f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~ 972 (1558)
.++|....+.+.++|+.|......+.-... +. ..+ . ...+.|+. ..||
T Consensus 7 L~Ppl~~~P~g~W~Cp~C~~~~~~~~~~~~-~~-~~~-----~-------------------~~~~~~l~-----~~~~- 54 (148)
T cd04718 7 LRPPLKEVPEGDWICPFCEVEKSGQSAMPQ-LP-PTS-----R-------------------SACEKLLS-----GDLW- 54 (148)
T ss_pred CCCCCCCCCCCCcCCCCCcCCCCCCccccc-CC-Ccc-----h-------------------hhhhhhcc-----CchH-
Confidence 356666677899999999876544332111 00 110 0 00112222 3566
Q ss_pred EEEEEEEEccCCCcccccCceEEEEEEeeccccCCccccccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCc
Q 000407 973 VCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPA 1052 (1558)
Q Consensus 973 IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~ 1052 (1558)
||||.+||. . .|..+++|+||||||++.+.+..++..+|||+|++++++|+++|.|||.|+..+++.... .
T Consensus 55 vArIekiW~------~-~G~~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e--~ 125 (148)
T cd04718 55 LARIEKLWE------E-NGTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDAS--N 125 (148)
T ss_pred HHHHHHHHh------c-cCceEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHccccc--C
Confidence 999999992 2 278899999999999999998889999999999999999999999999999999986433 3
Q ss_pred ccCCeEEEEEeecCCCCccccC
Q 000407 1053 IFQHIFFCEHLHDPSKGSLKQL 1074 (1558)
Q Consensus 1053 ~~dd~Fyce~~YD~~~~~~~~l 1074 (1558)
..+|+|||++.||..+++|+.+
T Consensus 126 ~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 126 DGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred CCCceEEEEEEEhhhcCceeec
Confidence 4679999999999999999865
No 37
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.58 E-value=5e-15 Score=157.17 Aligned_cols=118 Identities=28% Similarity=0.443 Sum_probs=88.6
Q ss_pred cceEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCC
Q 000407 928 TSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDIS 1007 (1558)
Q Consensus 928 ~~f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~ 1007 (1558)
.+++++|++|++||+|||.++. .+|| ||+|.+||.... ..+..+++|+|||||+||.
T Consensus 21 ~s~~~~g~~y~lGD~Vlv~s~~------------------~~~y-IgkI~~iwe~~~----~~g~~~~~v~WfyRp~E~~ 77 (159)
T cd04715 21 RSFTYDGVEYRLYDDVYVHNGD------------------SEPY-IGKIIKIYETAI----DSGKKKVKVIWFFRPSEIR 77 (159)
T ss_pred EEEEECCEEEeCCCEEEEeCCC------------------CCCE-EEEEEEEEEcCC----cCCceEEEEEeeeCHHHhc
Confidence 5689999999999999999752 2676 999999996421 1367899999999999996
Q ss_pred cccc--ccCCCceEEeecce-----eeeecceEeeeeEEeecCCCCCCCCC-----cccCCeEEEEEeecCCCCc
Q 000407 1008 AEKA--YCSDIREVYYSEET-----HLIFVEAIAGKCEVRKKNDIPACNAP-----AIFQHIFFCEHLHDPSKGS 1070 (1558)
Q Consensus 1008 ~~~~--~~~D~rELf~Sde~-----~~vpv~~I~GKC~V~~~~d~~~~~~~-----~~~dd~Fyce~~YD~~~~~ 1070 (1558)
.... ..+.+||||+|.+. +++|+++|.|||.|++.+++..-.++ ...+..|+| .||...+.
T Consensus 78 ~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~s~~~~~~~~~~f~~--~f~~~~~~ 150 (159)
T cd04715 78 MELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFRNPQPSDGIPTSADFLFPC--NFDVGRCV 150 (159)
T ss_pred cccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhhhCCCCcCCccccCcceeee--EEEecCce
Confidence 4322 34679999999875 67899999999999998876543332 122334554 56776653
No 38
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.57 E-value=2e-14 Score=148.33 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=96.6
Q ss_pred eceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCccccc
Q 000407 933 GTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAY 1012 (1558)
Q Consensus 933 ~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~ 1012 (1558)
.|..|++||+|++.++..+.- + +.+. ....|..|++|..+|.. .++..++.++|||||+||....
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~-----~-~~~~-~~~~~~~i~~V~~~~e~------~~g~~~~h~~W~yrp~eTv~g~-- 66 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADST-----T-KWND-DHRWLPLVQFVEYMKKG------SDGSKMFHGRWLYRGCDTVLGN-- 66 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCcc-----c-cccc-cccccceEEEEEEeeec------CCCceEEEEEEEEcchhccccc--
Confidence 478899999999999854210 0 0111 11344559999999843 3467799999999999997654
Q ss_pred cCCCceEEeecceeeeecc----eEeeeeEEeecCCCCCCCCCcccCCeEEEEEeecCCCCccccCC
Q 000407 1013 CSDIREVYYSEETHLIFVE----AIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQLP 1075 (1558)
Q Consensus 1013 ~~D~rELf~Sde~~~vpv~----~I~GKC~V~~~~d~~~~~~~~~~dd~Fyce~~YD~~~~~~~~lP 1075 (1558)
.++.||||+|++.+.++++ .|.|||.|..+..... ...++.|||...|++.++.|..||
T Consensus 67 ~~~~~ElFLSd~c~~~~~~~~~~~I~~k~~V~~~~~~~~----~~~~~~F~r~syy~~e~~~F~~l~ 129 (130)
T cd04712 67 YANERELFLTNECTCLELDLLSTEIKGVHKVDWSGTPWG----KGLPEFFVRQSYYWPERGAFTSLK 129 (130)
T ss_pred cCCCceEEEeccccccccccccceeEEEEEEEEecCcCC----cCCCCEEEEEEEECccCCceEcCC
Confidence 7899999999999999999 9999999998763321 345688999989999999998886
No 39
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.47 E-value=5.1e-14 Score=144.07 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=75.9
Q ss_pred EEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCC---ceEEEEEEEeecccc------ccCcCCCCCceEeecc--c-cc
Q 000407 762 EVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGG---CKLFHGIIMQRGSHT------VLGNTANEREVFLANQ--C-RD 829 (1558)
Q Consensus 762 ~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g---~kmfh~~WF~rg~eT------vLg~tad~rELFlsd~--c-dd 829 (1558)
.+|+|||||+|.++++ .+||||+|+.||++.+| .+++++|||||++|- .+|+..+++|||++++ | ++
T Consensus 2 ~~i~vGd~VlI~~~d~-~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~ 80 (128)
T cd04719 2 LTIEVGDFVLIEGEDA-DGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDND 80 (128)
T ss_pred eEEecCCEEEEECCCC-CCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCc
Confidence 4799999999999986 77899999999999876 568999999999976 6889999999999995 4 69
Q ss_pred ccccccceeEEEEEecCC
Q 000407 830 LELQDIKQTVVVDIRSVP 847 (1558)
Q Consensus 830 ~~l~~I~~K~~V~~~~~~ 847 (1558)
+.+++|.+||.|+...++
T Consensus 81 i~~etI~gkc~V~~~~~y 98 (128)
T cd04719 81 IDAETIIGKVRVEPVEPK 98 (128)
T ss_pred EeHHHcccEEEEEEcCCc
Confidence 999999999999977664
No 40
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.44 E-value=3.5e-13 Score=136.57 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=87.8
Q ss_pred ceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcccccc
Q 000407 934 TAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAYC 1013 (1558)
Q Consensus 934 G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~~ 1013 (1558)
|..|++||+|+|.++.. .+|-+||+|..||... ++..++++||||||+||.... .
T Consensus 1 g~~i~vGD~V~v~~~~~-----------------~~p~~I~rV~~mfe~~------~g~k~~h~rWf~Rg~dTVlG~--~ 55 (124)
T cd04760 1 GEELEAGDCVSVKPDDP-----------------TKPLYIARVTYMWKDS------IGGKMFHAHWFCRGSDTVLGE--T 55 (124)
T ss_pred CCEEecCCEEEEecCCC-----------------CCCcEEEEEhhheecC------CCCcEEEEEEEEECCcccccc--c
Confidence 67899999999998743 2455699999999443 356799999999999997643 4
Q ss_pred CCCceEEeecceeeeecceEeeeeEEeecCCCCC--------CCC--CcccCCeEEEEEeecCCCCcc
Q 000407 1014 SDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPA--------CNA--PAIFQHIFFCEHLHDPSKGSL 1071 (1558)
Q Consensus 1014 ~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~--------~~~--~~~~dd~Fyce~~YD~~~~~~ 1071 (1558)
++++|||+|++.+.+++.+|.|||.|.....-.+ ... .....+.|||..-||+...+|
T Consensus 56 ~~~kEvFlsd~c~d~~l~~I~~Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf 123 (124)
T cd04760 56 SDPLELFLVDECEDMALSSIHGKVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARF 123 (124)
T ss_pred CCCcEEEeecccCCcchHHheeeeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhcc
Confidence 8999999999999999999999999999763211 111 112248899999999865443
No 41
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.42 E-value=6.5e-13 Score=144.27 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=93.6
Q ss_pred cCEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCC-CceEEEEEEEeeccccccCcC---CC--------CCceEeeccc
Q 000407 760 HGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATG-GCKLFHGIIMQRGSHTVLGNT---AN--------EREVFLANQC 827 (1558)
Q Consensus 760 ~g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~-g~kmfh~~WF~rg~eTvLg~t---ad--------~rELFlsd~c 827 (1558)
||.+|++||+|+|.+++. .++|||.|..|+++.. +...++++||+|+.|-..+.. ++ +.|||||++.
T Consensus 49 d~~~~~vGD~Vlik~~~~-~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~ 127 (179)
T cd04720 49 DGLELSVGDTILVKDDVA-NSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAEL 127 (179)
T ss_pred CCeEEeCCCEEEEeCCCC-CCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEeccc
Confidence 899999999999999874 8899999999998865 557999999999999865442 33 6999999999
Q ss_pred ccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeC
Q 000407 828 RDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFIL 895 (1558)
Q Consensus 828 dd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~l 895 (1558)
+.++|.+|.+||+|+.... |..... . .+....+|||+..|++..+.|..+
T Consensus 128 d~i~l~~Ii~k~~Vls~~e-f~~~~~---~--------------~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 128 SEIKLKDIIDKANVLSESE-FNDLST---D--------------DKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ceEEhhheeeeEEEecHHH-hhhhcc---c--------------ccCCCceEEEEEEEeCCCCeEccc
Confidence 9999999999999994432 211100 0 112357999999999999988753
No 42
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.40 E-value=1.1e-12 Score=142.60 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=92.8
Q ss_pred eceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCccccc
Q 000407 933 GTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKAY 1012 (1558)
Q Consensus 933 ~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~~ 1012 (1558)
+|.+|++||+|+|+++.. .|+.||.|.+|+.... +..+.+.|.|||||.|+...+.+
T Consensus 49 d~~~~~vGD~Vlik~~~~------------------~~~~V~iI~ei~~~~~-----~~~v~i~v~Wy~r~~Ei~~~~~~ 105 (179)
T cd04720 49 DGLELSVGDTILVKDDVA------------------NSPSVYLIHEIRLNTL-----NNEVELWVMWFLRWFEINPARYY 105 (179)
T ss_pred CCeEEeCCCEEEEeCCCC------------------CCCEEEEEEEEEeCCC-----CCEEEEEEEEcCCHHHccccccc
Confidence 789999999999999742 3445999999984422 24578999999999999654432
Q ss_pred -cCC--------CceEEeecceeeeecceEeeeeEEeecCCCCCCCCC-cccCCeEEEEEeecCCCCccc
Q 000407 1013 -CSD--------IREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP-AIFQHIFFCEHLHDPSKGSLK 1072 (1558)
Q Consensus 1013 -~~D--------~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~-~~~dd~Fyce~~YD~~~~~~~ 1072 (1558)
.++ .||||+|.+.+.+++.+|.|||.|+....+...... ...+..|||++.||+.++.|.
T Consensus 106 ~~~~~~~~~~~~~nElflT~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~~~~~~~~F~cR~~~d~~~~~F~ 175 (179)
T cd04720 106 KQFDPEFRSESNKNELYLTAELSEIKLKDIIDKANVLSESEFNDLSTDDKNGERTFFCRYACEPDGEEFV 175 (179)
T ss_pred ccccchhcccCCCceEEEecccceEEhhheeeeEEEecHHHhhhhcccccCCCceEEEEEEEeCCCCeEc
Confidence 333 799999999999999999999999987776544332 335688999999999988664
No 43
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.36 E-value=2.1e-12 Score=131.21 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=86.9
Q ss_pred CeEEEecCCCCCCCeEEEEEEEeeeCCCc-------eEEEEEEEeeccccccCcC----CCCCceEeecccccccccccc
Q 000407 768 SAVLVEVDELDQLPVIYFVEYMFEATGGC-------KLFHGIIMQRGSHTVLGNT----ANEREVFLANQCRDLELQDIK 836 (1558)
Q Consensus 768 D~V~V~~~~~~~~p~I~~Ie~m~e~~~g~-------kmfh~~WF~rg~eTvLg~t----ad~rELFlsd~cdd~~l~~I~ 836 (1558)
|.|-=..-|.++|.+||+|.+|+-..++. -+++++|||||+||.-|.. +|-+|||+|+|-+.+|++.|.
T Consensus 14 ~~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~ 93 (137)
T cd04711 14 DYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQ 93 (137)
T ss_pred cccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhcc
Confidence 33333444567888999999999875543 3899999999999988763 466999999999999999999
Q ss_pred eeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCCC
Q 000407 837 QTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPV 897 (1558)
Q Consensus 837 ~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp~ 897 (1558)
|||.|+++..= .. .+. +-.. ..|..|||++.|+..++.|+++|.
T Consensus 94 GKC~V~~~~di----------~~-s~~-----~y~~-~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 94 GRCTVEYGEDL----------PE-SVQ-----EYSG-GGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred ceEEEEecccc----------ch-hHH-----HHhc-CCCcceEEhhhhccccCcccCCCC
Confidence 99999977531 00 011 1111 237799999999999999999983
No 44
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=99.32 E-value=1.7e-12 Score=154.59 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=112.0
Q ss_pred ceEEccccccccc-----cceeEEEEEcCEEEec-CCeEEEecCCCCCCCeEEEEEEEeeeCC-CceEEEEEEEeecccc
Q 000407 738 EITWEGECVRKSG-----LALYKKAIVHGEVVSL-GSAVLVEVDELDQLPVIYFVEYMFEATG-GCKLFHGIIMQRGSHT 810 (1558)
Q Consensus 738 ~i~W~Gep~~~~~-----~~~Y~~a~v~g~~~~v-GD~V~V~~~~~~~~p~I~~Ie~m~e~~~-g~kmfh~~WF~rg~eT 810 (1558)
...|.|.+....| +.+|.+..+.|..|.. ||+|.+.+++++.+|||++|++||.+.. +..+++++||||++|+
T Consensus 19 ~a~~~g~a~~~qGv~~~k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~ 98 (464)
T KOG1886|consen 19 EASSMGDANKEQGVGGVKSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEES 98 (464)
T ss_pred hhhhhhhhhhhccccccccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCcc
Confidence 4556677666622 5567777777766655 9999999999999999999999999977 5889999999999999
Q ss_pred ccCc-----CCCCCceEeecccccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceee
Q 000407 811 VLGN-----TANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLY 885 (1558)
Q Consensus 811 vLg~-----tad~rELFlsd~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y 885 (1558)
..+. +.++||||+|+|+|+++.++|.++|.|++++.+.....| .....|+|++.|
T Consensus 99 ~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~--------------------~~~~~f~~r~vY 158 (464)
T KOG1886|consen 99 EGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNR--------------------VGHESFICRRVY 158 (464)
T ss_pred CCCCCCCcccCCCccccccccccchhhhhhcccceeeecccccccccc--------------------CCCCCccccccc
Confidence 8755 467899999999999999999999999988754311100 113499999999
Q ss_pred cCCCccceeCC
Q 000407 886 WPERGAFFILP 896 (1558)
Q Consensus 886 ~~~~~~F~~lp 896 (1558)
+.-++.|..+-
T Consensus 159 d~~~~~~~~~~ 169 (464)
T KOG1886|consen 159 DAVTSKLRKLR 169 (464)
T ss_pred ccccccccCcc
Confidence 99999988765
No 45
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.28 E-value=1.2e-11 Score=126.88 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=86.0
Q ss_pred eEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcc----c
Q 000407 935 AEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE----K 1010 (1558)
Q Consensus 935 ~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~----~ 1010 (1558)
..++|||||+|.++.. ..|| ||+|.+|+...+.. .....++|||||||+++... .
T Consensus 2 ~~i~vGd~VlI~~~d~-----------------~~~y-VAkI~~i~e~~~~~---~~~~~~~VqWy~R~~Ev~~~~~~~~ 60 (128)
T cd04719 2 LTIEVGDFVLIEGEDA-----------------DGPD-VARILHLYEDGNED---DDPKRAIVQWFSRPSEVPKNKRKLL 60 (128)
T ss_pred eEEecCCEEEEECCCC-----------------CCCc-EeeehhhhccccCC---cccceEEEEcccChHHccccchhhc
Confidence 4689999999999853 2576 99999999654321 12568999999999998532 2
Q ss_pred cccCCCceEEeeccee---eeecceEeeeeEEeecCCCCCCCCC-cccCCeEEEEEeecCCC
Q 000407 1011 AYCSDIREVYYSEETH---LIFVEAIAGKCEVRKKNDIPACNAP-AIFQHIFFCEHLHDPSK 1068 (1558)
Q Consensus 1011 ~~~~D~rELf~Sde~~---~vpv~~I~GKC~V~~~~d~~~~~~~-~~~dd~Fyce~~YD~~~ 1068 (1558)
....+.+|||++++.. .+++++|.|||.|+....+....+. ......||++..+|.+.
T Consensus 61 ~~~~~~~EvF~~~~~~~~~~i~~etI~gkc~V~~~~~y~~l~~~~~~~~~~~F~r~~~~~k~ 122 (128)
T cd04719 61 GREPHSQEVFFYSRSSCDNDIDAETIIGKVRVEPVEPKTDLPETKKKTGGPLFVKRYWDTKT 122 (128)
T ss_pred cCCCCCcEEEEecCccccCcEeHHHcccEEEEEEcCCccchhhhccccCceEEEEEEecccc
Confidence 2346789999999874 8999999999999999888765532 23456788887777554
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.25 E-value=5.5e-12 Score=155.39 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=108.3
Q ss_pred EEEcCEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcC--CCCCceEeecccccccccc
Q 000407 757 AIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNT--ANEREVFLANQCRDLELQD 834 (1558)
Q Consensus 757 a~v~g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~t--ad~rELFlsd~cdd~~l~~ 834 (1558)
+.|+|..|.+||.|||.....+..|.|++|+++|++.+|.++..|+||+||++|+|-.. +-.+|||.+....+.+++.
T Consensus 184 ~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~ 263 (629)
T KOG1827|consen 184 VEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQR 263 (629)
T ss_pred ccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHH
Confidence 78999999999999999988778899999999999999999999999999999998554 6799999999999999999
Q ss_pred cceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcCCCcceEEceeecCCCccceeCCCCC
Q 000407 835 IKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDS 899 (1558)
Q Consensus 835 I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~~~~~f~c~~~Y~~~~~~F~~lp~~~ 899 (1558)
|+|+|.|+....+..... + .- .....|.|+++|+.+...|..+..|.
T Consensus 264 l~g~c~v~~~~~yi~~~p-------~--------~l---s~~dv~lcesRyn~~~K~f~kirsw~ 310 (629)
T KOG1827|consen 264 LLGKCYVMKPTEYISGDP-------E--------NL---SEEDVFLCESRYNEQLKKFNKIRSWK 310 (629)
T ss_pred hhcceEEeehhHhhhcCc-------c--------cc---cccceeeEEeeeccchhhhccccCch
Confidence 999999997766443221 1 00 11349999999999999999988876
No 47
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=98.97 E-value=6.2e-10 Score=133.07 Aligned_cols=124 Identities=24% Similarity=0.422 Sum_probs=99.3
Q ss_pred cceEEeceEEee-CCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccC
Q 000407 928 TSFVYGTAEYFV-HDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDI 1006 (1558)
Q Consensus 928 ~~f~~~G~~Y~v-GD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi 1006 (1558)
..|.|.|-.|.. +|.|.+.|+.. +..|| ||+|..||...+ .+...+.|+||||||++
T Consensus 41 ~t~~~~~g~~~~~~d~vllvped~----------------~~pPy-vaii~~i~a~~~-----g~~~k~ev~W~YrPee~ 98 (464)
T KOG1886|consen 41 ETFIYRGGRYINYGDSVLLVPEDP----------------GKPPY-VAIIEDIYAQER-----GGNVKVEVQWFYRPEES 98 (464)
T ss_pred cceeeccCcccccCcceeecCCCC----------------CCCCe-eEEEeeeecccc-----CCCcceecccccCCCcc
Confidence 457888888988 99999999864 24676 999999995544 25788999999999998
Q ss_pred Ccc---ccccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCCcccCCeEEEEEeecCCCCccccC
Q 000407 1007 SAE---KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPAIFQHIFFCEHLHDPSKGSLKQL 1074 (1558)
Q Consensus 1007 ~~~---~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~~~dd~Fyce~~YD~~~~~~~~l 1074 (1558)
... .--..+.||||+|.|.+.+++..|.+||.|.++....+...... ...|+|++.||.-++.+..+
T Consensus 99 ~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~~~-~~~f~~r~vYd~~~~~~~~~ 168 (464)
T KOG1886|consen 99 EGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNRVG-HESFICRRVYDAVTSKLRKL 168 (464)
T ss_pred CCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccccccCC-CCCcccccccccccccccCc
Confidence 543 22346789999999999999999999999999988766544333 35599999999988776543
No 48
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.91 E-value=9.7e-10 Score=135.94 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=105.2
Q ss_pred eEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcc
Q 000407 930 FVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE 1009 (1558)
Q Consensus 930 f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~ 1009 (1558)
...+|..|++||+||+.+.... ..| +|++|..+| +..+|.-++.++|||||+.+.|.
T Consensus 184 ~~i~~~~~~~gd~vlv~~~~d~----------------~~p-~v~~Ier~w------~~~dg~k~~~~~w~~rP~~T~H~ 240 (629)
T KOG1827|consen 184 VEIDGTKYIVGDYVLVQNPADN----------------LKP-IVAQIERLW------KLPDGEKWPQGCWIYRPEETVHR 240 (629)
T ss_pred ccccCcccccCceeeecCcccc----------------cCC-ceeeecccc------cCcccccccceeEeeCCccCccc
Confidence 6788999999999999987531 244 799999999 45678889999999999999998
Q ss_pred ccccCCCceEEeecceeeeecceEeeeeEEeecCCCCCCCCC-cccCCeEEEEEeecCCCCccccC
Q 000407 1010 KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP-AIFQHIFFCEHLHDPSKGSLKQL 1074 (1558)
Q Consensus 1010 ~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~-~~~dd~Fyce~~YD~~~~~~~~l 1074 (1558)
....+..+|||.+..+.+++++.|+|+|+|++...+..-+.. ....++|.|+++|+...+.|.++
T Consensus 241 a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv~lcesRyn~~~K~f~ki 306 (629)
T KOG1827|consen 241 ADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDVFLCESRYNEQLKKFNKI 306 (629)
T ss_pred cccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccceeeEEeeeccchhhhccc
Confidence 888899999999999999999999999999999888665543 34468999999999999888754
No 49
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=98.80 E-value=4.5e-10 Score=130.44 Aligned_cols=121 Identities=26% Similarity=0.434 Sum_probs=98.5
Q ss_pred EEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCccc-----
Q 000407 936 EYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEK----- 1010 (1558)
Q Consensus 936 ~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~----- 1010 (1558)
.|+||||||+..... .||.|-+|.++- |..+|.+..+|-.|||.+||+...
T Consensus 5 ~y~vgd~vYf~~sss------------------~PYliRrIEELn------KTa~GnVeAkvVc~~RRRDIs~~L~~lAD 60 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSS------------------NPYLIRRIEELN------KTANGNVEAKVVCYLRRRDISSHLLKLAD 60 (693)
T ss_pred cceecceEEEecCCC------------------ChHHHHHHHHHh------ccccCCcceEEEEEEEccchHHHHHHHHH
Confidence 699999999998743 599999998874 667789999999999999996431
Q ss_pred --c-----ccC--------------------------------CCceEEeecceeeeecceEeeeeEEeecCCCCCCCCC
Q 000407 1011 --A-----YCS--------------------------------DIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAP 1051 (1558)
Q Consensus 1011 --~-----~~~--------------------------------D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~ 1051 (1558)
+ |.+ -.+|||+|.+...+|...|+|||.|...++-.....+
T Consensus 61 ~~ar~~~~y~a~~~a~~~~e~e~EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~Y 140 (693)
T KOG3554|consen 61 KHARRFDNYAAPEAAPEATEAEIEEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSY 140 (693)
T ss_pred HHhhhcccccCcccCcccchhhhhhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHHhh
Confidence 1 100 2589999999999999999999999999988777777
Q ss_pred cccCCeEEEEEeecCCCCccccCCccccc
Q 000407 1052 AIFQHIFFCEHLHDPSKGSLKQLPAHIKL 1080 (1558)
Q Consensus 1052 ~~~dd~Fyce~~YD~~~~~~~~lP~~~r~ 1080 (1558)
-..+|+||....|||..+++--=..+|++
T Consensus 141 L~~eDtFfySLVyDP~~kTLLADkGeIRV 169 (693)
T KOG3554|consen 141 LEKEDTFFYSLVYDPNQKTLLADKGEIRV 169 (693)
T ss_pred ccccceeEEEeeeccchhhhhccCcceee
Confidence 77899999999999998875433344554
No 50
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=96.21 E-value=0.00093 Score=79.24 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=80.6
Q ss_pred EEEecCCeEEEecCCCCCCCe-EEEEEEEeeeCCCceEEEEEEEeecccc---cc-------------------------
Q 000407 762 EVVSLGSAVLVEVDELDQLPV-IYFVEYMFEATGGCKLFHGIIMQRGSHT---VL------------------------- 812 (1558)
Q Consensus 762 ~~~~vGD~V~V~~~~~~~~p~-I~~Ie~m~e~~~g~kmfh~~WF~rg~eT---vL------------------------- 812 (1558)
..|.|||+||+....++ || |-+||+|-.+.+|.--..+--|+|-.|. .+
T Consensus 4 n~y~vgd~vYf~~sss~--PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~ 81 (693)
T KOG3554|consen 4 NMYRVGDYVYFENSSSN--PYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEA 81 (693)
T ss_pred ccceecceEEEecCCCC--hHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchh
Confidence 37999999999988754 67 8889999999999888888888884441 11
Q ss_pred -----------Cc-C------CCCCceEeecccccccccccceeEEEEEecCCCCccccccccchhhhhHHHHHHhhhcC
Q 000407 813 -----------GN-T------ANEREVFLANQCRDLELQDIKQTVVVDIRSVPWGHQHRKDIANADKVDRARAEERKKKG 874 (1558)
Q Consensus 813 -----------g~-t------ad~rELFlsd~cdd~~l~~I~~K~~V~~~~~~w~~~~~~~~~~~~~~~~~~~eer~~~~ 874 (1558)
+. + -..+|||||-..+.+|...|.|||.|......=. .. ... .
T Consensus 82 e~EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~---------~~---~YL-------~ 142 (693)
T KOG3554|consen 82 EIEEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETES---------LQ---SYL-------E 142 (693)
T ss_pred hhhhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHH---------HH---hhc-------c
Confidence 00 0 0248999999999999999999999986643100 00 000 0
Q ss_pred CCcceEEceeecCCCccce
Q 000407 875 LPTEYYCKSLYWPERGAFF 893 (1558)
Q Consensus 875 ~~~~f~c~~~Y~~~~~~F~ 893 (1558)
....|||..+|||...+.-
T Consensus 143 ~eDtFfySLVyDP~~kTLL 161 (693)
T KOG3554|consen 143 KEDTFFYSLVYDPNQKTLL 161 (693)
T ss_pred ccceeEEEeeeccchhhhh
Confidence 1238999999999876543
No 51
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.64 E-value=0.017 Score=62.51 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=32.5
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
.++|+|||+||-+..|.+.+-. +.|+|+|+..++-.++|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hN 40 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHN 40 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHH
Confidence 4899999999999999999654 37999999999999988
No 52
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.56 E-value=0.022 Score=57.23 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=38.9
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~ 1166 (1558)
.++||+|||.|.+...+.+.| .....++|+++.|++.-+.|++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~ 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc
Confidence 579999999999999999998 333589999999999999987643
No 53
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.46 E-value=0.03 Score=61.89 Aligned_cols=45 Identities=29% Similarity=0.273 Sum_probs=33.8
Q ss_pred cCCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1118 ~~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-..-++||||||.|.+++=.-.-|... +++||.++.|+++.+.|.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~-v~fVE~~~~a~~~i~~N~ 85 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKS-VVFVEKNRKAIKIIKKNL 85 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SE-EEEEES-HHHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCe-EEEEECCHHHHHHHHHHH
Confidence 357899999999999887444557776 478999999999999994
No 54
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.43 E-value=0.21 Score=66.26 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=91.6
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
-++||||||.|++++-+..+|... +.++|+++.|++.-+.|.-....-...+.. .++|+ .+..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~-------i~~D~---------~~~l 602 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRL-------IQADC---------LAWL 602 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEE-------EEccH---------HHHH
Confidence 479999999999999999988875 479999999999888885211000000000 01332 1111
Q ss_pred hhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHH-HHhhcCCc-EEEEeccccccccccch
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLS-FADYFQPR-YFLLENVRNFVSFNKGQ 1278 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~-~id~~rPk-~flLENV~g~ls~~~g~ 1278 (1558)
. .+ .+.+|+|+--||.=+-+... ...+...+ .+..++. ....++|. .+++++-..-
T Consensus 603 ~--------~~--~~~fDlIilDPP~f~~~~~~---~~~~~~~~--~y~~l~~~a~~lL~~gG~l~~~~~~~~------- 660 (702)
T PRK11783 603 K--------EA--REQFDLIFIDPPTFSNSKRM---EDSFDVQR--DHVALIKDAKRLLRPGGTLYFSNNKRG------- 660 (702)
T ss_pred H--------Hc--CCCcCEEEECCCCCCCCCcc---chhhhHHH--HHHHHHHHHHHHcCCCCEEEEEeCCcc-------
Confidence 1 11 24699999999976543210 01011111 1222222 23456775 4456654332
Q ss_pred hHHHHHHHHhcCCcEEEEE--EEecCCCCCCCCccEEEEEe
Q 000407 1279 TFRLTLASLLEMGYQVRFG--ILEAGAFGVSQSRKRAFIWA 1317 (1558)
Q Consensus 1279 ~f~~il~~L~~~GYqv~~~--vLnA~~yGVPQsR~RvfIva 1317 (1558)
+......+...||+++.. .-.+.+|=++.+..|.|.|.
T Consensus 661 -~~~~~~~~~~~g~~~~~i~~~~~~~Dhp~~~~~~~~~~~~ 700 (702)
T PRK11783 661 -FKMDEEGLAKLGLKAEEITAKTLPPDFARNPKIHNCWLIT 700 (702)
T ss_pred -CChhHHHHHhCCCeEEEEecCCCCCCCCCCcccceeEEEe
Confidence 223367777889887643 34667777778888888775
No 55
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.20 E-value=0.12 Score=64.66 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=79.7
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
-++||||||.|.+++-|.+.+.. ++|+|+++.|++.-+.|.....+ .++.. .+||.. +..
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~--V~~vE~~~~av~~a~~n~~~~~~--~nv~~-------~~~d~~---------~~l 353 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKS--VVGIEVVPESVEKAQQNAELNGI--ANVEF-------LAGTLE---------TVL 353 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCE--EEEEEcCHHHHHHHHHHHHHhCC--CceEE-------EeCCHH---------HHH
Confidence 47999999999999999876543 47999999999988877421110 00100 124431 111
Q ss_pred hhcchhhhcCCCC-CCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchh
Q 000407 1201 ASLDENVINNLPL-PGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~-pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~ 1279 (1558)
.. ++. .+.+|+|+..||.-|. ...+++.+..++|+-++. ++.+ -.+
T Consensus 354 ~~--------~~~~~~~~D~vi~dPPr~G~------------------~~~~l~~l~~l~~~~ivy------vsc~-p~t 400 (431)
T TIGR00479 354 PK--------QPWAGQIPDVLLLDPPRKGC------------------AAEVLRTIIELKPERIVY------VSCN-PAT 400 (431)
T ss_pred HH--------HHhcCCCCCEEEECcCCCCC------------------CHHHHHHHHhcCCCEEEE------EcCC-HHH
Confidence 11 111 1347999999994321 123445555678865543 2332 246
Q ss_pred HHHHHHHHhcCCcEEEEEEEecCCCCCCCCc
Q 000407 1280 FRLTLASLLEMGYQVRFGILEAGAFGVSQSR 1310 (1558)
Q Consensus 1280 f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR 1310 (1558)
+..-+..|.+.||.+.. +.+-|. -||+.
T Consensus 401 lard~~~l~~~gy~~~~--~~~~Dm-FP~T~ 428 (431)
T TIGR00479 401 LARDLEFLCKEGYGITW--VQPVDM-FPHTA 428 (431)
T ss_pred HHHHHHHHHHCCeeEEE--EEEecc-CCCCC
Confidence 77778888889998753 222332 56654
No 56
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=95.12 E-value=0.097 Score=64.25 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=35.4
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-++||||||+|.+++.+...|.. ++++|+++.|++.-+.|.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~--v~~vE~~~~av~~a~~N~ 275 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQ--LTGIEIESEAIACAQQSA 275 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCe--EEEEECCHHHHHHHHHHH
Confidence 37999999999999999877743 479999999999888875
No 57
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.50 E-value=0.056 Score=62.72 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=79.1
Q ss_pred CceeeccccCchHHHHHHhhc--CCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A--G~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~ 1197 (1558)
..++||||||+|.+++.+... |.. ++|+|+++.|++.-+.|...... . -.+||..+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~--v~~vDis~~al~~A~~N~~~~~~-----~-------~~~~D~~~~------- 145 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIE--LHAADIDPAAVRCARRNLADAGG-----T-------VHEGDLYDA------- 145 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCE--EEEEECCHHHHHHHHHHHHHcCC-----E-------EEEeechhh-------
Confidence 458999999999999998653 433 47999999999998888532100 0 012443210
Q ss_pred HHHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCC-Ccchhhhh---------HHHHHHHHH-hhcCCc-EEEE
Q 000407 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQS-TWSKVQCE---------MILAFLSFA-DYFQPR-YFLL 1265 (1558)
Q Consensus 1198 el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~-~~~~~r~~---------Lv~~fl~~i-d~~rPk-~flL 1265 (1558)
+.. . ..+.+|+|+..|||.+.+...+.... .+...+.. .+..++..+ ..++|. .++|
T Consensus 146 -----l~~----~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 146 -----LPT----A--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred -----cch----h--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 100 0 12469999999999987654331110 00111111 233344332 456775 3445
Q ss_pred eccccccccccchhHHHHHHHHhcCCcEEEEEE
Q 000407 1266 ENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGI 1298 (1558)
Q Consensus 1266 ENV~g~ls~~~g~~f~~il~~L~~~GYqv~~~v 1298 (1558)
|-= .. ....++..|...|+......
T Consensus 215 ~~~-------~~-~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 215 ETS-------ER-QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred EEC-------cc-hHHHHHHHHHHCCCCceeeE
Confidence 521 11 24467777888888765544
No 58
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.30 E-value=0.18 Score=63.30 Aligned_cols=123 Identities=22% Similarity=0.283 Sum_probs=73.8
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
.-++||||||.|.+++.|...+.. +.|+|+++.|++.-+.|...... .++. ..+||+.+ .
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~--V~gvD~s~~al~~A~~n~~~~~~--~~v~-------~~~~d~~~---------~ 357 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAE--VVGVEGVEAMVERARENARRNGL--DNVT-------FYHANLEE---------D 357 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCE--EEEEeCCHHHHHHHHHHHHHcCC--CceE-------EEEeChHH---------h
Confidence 358999999999999999887743 47999999999988877421100 0000 11244321 0
Q ss_pred HhhcchhhhcCCCC-CCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccch
Q 000407 1200 AASLDENVINNLPL-PGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~-pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~ 1278 (1558)
+ ..+|. .+.+|+|+.-||+.|.. .++..+..+.|+-++. +|-+. .
T Consensus 358 ---l-----~~~~~~~~~fD~Vi~dPPr~g~~-------------------~~~~~l~~~~~~~ivy------vSCnp-~ 403 (443)
T PRK13168 358 ---F-----TDQPWALGGFDKVLLDPPRAGAA-------------------EVMQALAKLGPKRIVY------VSCNP-A 403 (443)
T ss_pred ---h-----hhhhhhcCCCCEEEECcCCcChH-------------------HHHHHHHhcCCCeEEE------EEeCh-H
Confidence 0 01111 23589999999976421 1123333456655443 33332 3
Q ss_pred hHHHHHHHHhcCCcEEEE
Q 000407 1279 TFRLTLASLLEMGYQVRF 1296 (1558)
Q Consensus 1279 ~f~~il~~L~~~GYqv~~ 1296 (1558)
++..=+..|.+.||++..
T Consensus 404 tlaRDl~~L~~~gY~l~~ 421 (443)
T PRK13168 404 TLARDAGVLVEAGYRLKR 421 (443)
T ss_pred HhhccHHHHhhCCcEEEE
Confidence 555666677788999863
No 59
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.28 E-value=0.1 Score=57.66 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=36.2
Q ss_pred cCCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1118 ~~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
...-++||||||.|++++=.-.-|...+ ..||.|..|..+.+.|.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~-~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARV-VFVEKDRKAVKILKENL 86 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceE-EEEecCHHHHHHHHHHH
Confidence 4578999999999998754434466663 68999999999999993
No 60
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.25 E-value=0.24 Score=54.71 Aligned_cols=120 Identities=24% Similarity=0.259 Sum_probs=77.4
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
-+++||-||+|-|++|.--.|... +.|+|+|+.|+++.+.|-.. . .|++.-.
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~-V~~vdiD~~a~ei~r~N~~~---l--------------~g~v~f~---------- 98 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASR-VLAVDIDPEALEIARANAEE---L--------------LGDVEFV---------- 98 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcE-EEEEecCHHHHHHHHHHHHh---h--------------CCceEEE----------
Confidence 469999999999999999999886 58999999999999999653 1 1333210
Q ss_pred hhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchhH
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~f 1280 (1558)
..++..+ .+.+|.++=-||--.. .+ +.+ ...+...+++. ...-|.++..+.
T Consensus 99 ----~~dv~~~--~~~~dtvimNPPFG~~---~r--haD-----r~Fl~~Ale~s-------------~vVYsiH~a~~~ 149 (198)
T COG2263 99 ----VADVSDF--RGKFDTVIMNPPFGSQ---RR--HAD-----RPFLLKALEIS-------------DVVYSIHKAGSR 149 (198)
T ss_pred ----Ecchhhc--CCccceEEECCCCccc---cc--cCC-----HHHHHHHHHhh-------------heEEEeeccccH
Confidence 1111222 2567888888884332 11 221 12344455544 122333444466
Q ss_pred HHHHHHHhcCCcEEEEE
Q 000407 1281 RLTLASLLEMGYQVRFG 1297 (1558)
Q Consensus 1281 ~~il~~L~~~GYqv~~~ 1297 (1558)
..+.+...+.||++...
T Consensus 150 ~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 150 DFVEKFAADLGGTVTHI 166 (198)
T ss_pred HHHHHHHHhcCCeEEEE
Confidence 67788888999998643
No 61
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.15 E-value=0.3 Score=58.51 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=36.2
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||||||.|.+++-|.+.|.. ++|+|+++.|++.-+.|.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~--V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQ--LTGIEISAEAIACAKQSA 215 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCE--EEEEeCCHHHHHHHHHHH
Confidence 357999999999999999988754 479999999999888774
No 62
>PHA03412 putative methyltransferase; Provisional
Probab=94.06 E-value=0.096 Score=59.99 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=38.8
Q ss_pred CceeeccccCchHHHHHHhhc----CCcEeEEEEcCCHhHHHHHHHhCCCCchh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS----GISSTKWAIEYEEPAGEAFKLNHPESLML 1169 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A----G~~~~~~AvE~d~~A~~ty~~N~P~~~~~ 1169 (1558)
..++||+.||.|.+++.+.+. +-.. +.|+|+|+.|++.-+.|.+...+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~ 102 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWI 102 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEE
Confidence 468999999999999987653 2223 589999999999999998765443
No 63
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=93.87 E-value=0.36 Score=59.05 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=34.2
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
++||||||.|++++.|.+.. .. ++|+|+++.|++.-+.|.
T Consensus 209 ~vLDl~~G~G~~sl~la~~~-~~-v~~vE~~~~ai~~a~~N~ 248 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF-RR-VLATEISKPSVAAAQYNI 248 (362)
T ss_pred eEEEEeccccHHHHHHHhhC-CE-EEEEECCHHHHHHHHHHH
Confidence 59999999999999887754 44 489999999999888873
No 64
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.85 E-value=0.27 Score=61.34 Aligned_cols=129 Identities=23% Similarity=0.263 Sum_probs=81.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~e 1198 (1558)
..-+++|||||.|.+++.|......+ .++|+.+.|++.-+.|--....- ++.. ..|+. .+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V--~gvEi~~~aV~~A~~NA~~n~i~--N~~f-------~~~~a---------e~ 352 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKV--HGVEISPEAVEAAQENAAANGID--NVEF-------IAGDA---------EE 352 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEE--EEEecCHHHHHHHHHHHHHcCCC--cEEE-------EeCCH---------HH
Confidence 34679999999999999998666654 69999999999988873211100 0000 01221 22
Q ss_pred HHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccch
Q 000407 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278 (1558)
Q Consensus 1199 l~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~ 1278 (1558)
...+.. .....|.|+-=|| | .+ +-..+++.+..+.|+.++. +|-| =.
T Consensus 353 ~~~~~~--------~~~~~d~VvvDPP--------R--~G--------~~~~~lk~l~~~~p~~IvY------VSCN-P~ 399 (432)
T COG2265 353 FTPAWW--------EGYKPDVVVVDPP--------R--AG--------ADREVLKQLAKLKPKRIVY------VSCN-PA 399 (432)
T ss_pred Hhhhcc--------ccCCCCEEEECCC--------C--CC--------CCHHHHHHHHhcCCCcEEE------EeCC-HH
Confidence 211111 1125799999999 2 11 2225677788888886554 3443 24
Q ss_pred hHHHHHHHHhcCCcEEE-EEEEe
Q 000407 1279 TFRLTLASLLEMGYQVR-FGILE 1300 (1558)
Q Consensus 1279 ~f~~il~~L~~~GYqv~-~~vLn 1300 (1558)
++..-+..|.+.||.+. ...+|
T Consensus 400 TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 400 TLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred HHHHHHHHHHhCCeEEEEEEEec
Confidence 77788889999999764 44444
No 65
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=93.67 E-value=0.083 Score=58.74 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=37.8
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||||||.|.+++-+-..|... +.++|.++.|++..+.|.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~-v~~vE~~~~a~~~~~~N~ 92 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKV-AFLEEDDRKANQTLKENL 92 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHH
Confidence 4579999999999999998888875 479999999999988874
No 66
>PHA03411 putative methyltransferase; Provisional
Probab=93.52 E-value=0.13 Score=60.10 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=37.4
Q ss_pred ceeeccccCchHHHHHHhhc--CCcEeEEEEcCCHhHHHHHHHhCCCCchh
Q 000407 1121 LATLDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLNHPESLML 1169 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~A--G~~~~~~AvE~d~~A~~ty~~N~P~~~~~ 1169 (1558)
-++||++||+|.++..+... +.. +.++|+++.+++.-+.|+|...++
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~--V~gVDisp~al~~Ar~n~~~v~~v 114 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEK--IVCVELNPEFARIGKRLLPEAEWI 114 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCE--EEEEECCHHHHHHHHHhCcCCEEE
Confidence 47999999999998877553 333 479999999999999988765443
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=93.42 E-value=0.11 Score=56.61 Aligned_cols=45 Identities=27% Similarity=0.215 Sum_probs=39.3
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..-++|||.||+|.+++.+.+.+-...+.++|+++.|++.-+.|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA 75 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 456799999999999999999877745689999999999888874
No 68
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.15 E-value=0.21 Score=56.12 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=33.8
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||||||+|.+++.+-..|... +.++|.++.|++..+.|.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~-V~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAG-ATLLEMDRAVAQQLIKNL 96 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHH
Confidence 3589999999999998543334444 479999999999888874
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=93.05 E-value=0.61 Score=51.01 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=83.5
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
-++|||.||.|.++..+...|. . +.++|+++.+++.-+.|...... + +...++|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~-----~-----~~~~~~d~~------------ 76 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-C-ILTTDINPFAVKELRENAKLNNV-----G-----LDVVMTDLF------------ 76 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-E-EEEEECCHHHHHHHHHHHHHcCC-----c-----eEEEEcccc------------
Confidence 4699999999999999999887 3 47999999999987777421100 0 000013321
Q ss_pred hhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcch-------hhhhHHHHHHHHH-hhcCCc--EEEEecccc
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSK-------VQCEMILAFLSFA-DYFQPR--YFLLENVRN 1270 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~-------~r~~Lv~~fl~~i-d~~rPk--~flLENV~g 1270 (1558)
..+ .+.+|+|+.+||+...+...+. ..+.+ .-..++..+++.+ ..++|. +++..+-.
T Consensus 77 ---------~~~-~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~- 143 (179)
T TIGR00537 77 ---------KGV-RGKFDVILFNPPYLPLEDDLRR--GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL- 143 (179)
T ss_pred ---------ccc-CCcccEEEECCCCCCCcchhcc--cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc-
Confidence 111 2479999999999766543211 00000 0012344455444 345673 33333211
Q ss_pred ccccccchhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEE
Q 000407 1271 FVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIW 1316 (1558)
Q Consensus 1271 ~ls~~~g~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIv 1316 (1558)
.....++..|.+.||++.. ...||.| ++++|++
T Consensus 144 -------~~~~~~~~~l~~~gf~~~~----~~~~~~~--~~~~~~~ 176 (179)
T TIGR00537 144 -------NGEPDTFDKLDERGFRYEI----VAERGLF--FEELFAI 176 (179)
T ss_pred -------CChHHHHHHHHhCCCeEEE----EEEeecC--ceEEEEE
Confidence 1145678888889987642 3345544 4555554
No 70
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=92.62 E-value=0.25 Score=61.08 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||||||+||+++..-..|... ++++|+++.|++.-+.|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~-V~~VD~s~~al~~a~~N~ 263 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQ-VVSVDTSQEALDIARQNV 263 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHH
Confidence 3579999999999988766667655 479999999999877774
No 71
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.44 E-value=1.8 Score=50.39 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
...++||+.||.|.++..+....-...++++|+++.|++.-+.|..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3578999999999999998876532235899999999998888743
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=92.22 E-value=1.3 Score=50.38 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=35.7
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||++||.|.++.-+.+.|... +.++|+++.+++.-+.|.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~-v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGS-VTAVDISRRAVRSARLNA 79 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCe-EEEEECCHHHHHHHHHHH
Confidence 3589999999999999888877644 479999999998777664
No 73
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=91.96 E-value=0.13 Score=57.72 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=32.0
Q ss_pred CceeeccccCchHHHHHHhh-cCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~-AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
.=+++|+|||+|.+++-+.+ +.... ++|+|++|.|.+.++.|
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~N 144 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKEN 144 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHH
T ss_pred ceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHH
Confidence 34799999999999998877 33333 58999999999988877
No 74
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.90 E-value=0.14 Score=53.82 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=41.0
Q ss_pred cCCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCC
Q 000407 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165 (1558)
Q Consensus 1118 ~~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~ 1165 (1558)
.....++||.||||-|+.|+..-+.+. +.++|+|+.|.+++.+|--.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~-vlGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNES-VLGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCce-EEeeecCHHHHHHHhhchHH
Confidence 345678999999999999999999886 48999999999999999543
No 75
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=91.35 E-value=0.56 Score=58.68 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=36.1
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
.-++||++||.||.+.-+.+.+-...++|+|+++.+++..+.|..
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH
Confidence 347999999999999988775432235899999999999888853
No 76
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=91.23 E-value=0.4 Score=52.02 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=37.1
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~ 1165 (1558)
-++||++||.|.++.-+.+.+.. ++|+|+++.+++..+.|+..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~--v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAAR--VTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCe--EEEEECCHHHHHHHHHHhcc
Confidence 47999999999999999887644 47999999999999988753
No 77
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=91.04 E-value=0.82 Score=57.53 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=53.9
Q ss_pred ceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
-++||+|||.||.+.-+.+. +-.-.++|+|+++.+++..+.|.....+- ++. ..++|..
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~-------~~~~Da~----------- 311 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIE-------TIEGDAR----------- 311 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEE-------EEeCccc-----------
Confidence 57999999999998766542 11112589999999999888775321100 000 0113321
Q ss_pred HhhcchhhhcCCCCCCceeEEEecCCCCCccccccC
Q 000407 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~ 1235 (1558)
.++..+.+|+|+-.+||.|.....|.
T Consensus 312 ----------~~~~~~~fD~Vl~D~Pcsg~g~~~r~ 337 (445)
T PRK14904 312 ----------SFSPEEQPDAILLDAPCTGTGVLGRR 337 (445)
T ss_pred ----------ccccCCCCCEEEEcCCCCCcchhhcC
Confidence 12223469999999999998877653
No 78
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=90.89 E-value=0.31 Score=59.79 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=44.7
Q ss_pred CceeeccccCchHHHHHHhhc--CCcEeEEEEcCCHhHHHHHHHhCC-----CCchhcchhhHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLNHP-----ESLMLINNCNVILR 1178 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A--G~~~~~~AvE~d~~A~~ty~~N~P-----~~~~~~~~~n~il~ 1178 (1558)
.+++||+|||+|.+++=+-.. |+.. ++++|+++.|++..+.|.- +..+++.|++.++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~-Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~ 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVRE-VFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH
Confidence 589999999999888766543 7776 4899999999999987741 24566677766654
No 79
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=90.78 E-value=0.65 Score=54.35 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=33.9
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+|||.||.+.-+.+. +-.-.++|+|+++.+++..+.|.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~ 116 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI 116 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 457999999999999877552 11112589999999999888774
No 80
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=0.19 Score=59.28 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.6
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+++||++|+|.+++++...+-...++|+|+++.|++.=+.|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 899999999999999999887645689999999999888874
No 81
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=90.19 E-value=0.27 Score=59.32 Aligned_cols=129 Identities=24% Similarity=0.203 Sum_probs=78.2
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
.=+++|+|||.|-+|+-+-..|... ++|+|++|.|++-++.|---..+ ..-+...+||..+ .
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v--------~~~v~~i~gD~re---------v 250 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKV--------EGRVEPILGDARE---------V 250 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCc--------cceeeEEeccHHH---------h
Confidence 4579999999999999999999886 69999999999999888311000 0001112355321 1
Q ss_pred HhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccccccccchh
Q 000407 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQT 1279 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ls~~~g~~ 1279 (1558)
.|..+..|=|+-|-|= .. -..+...++.+.. ..-.-+-|||+.-.... ..
T Consensus 251 -----------~~~~~~aDrIim~~p~----------~a------~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~--~~ 300 (341)
T COG2520 251 -----------APELGVADRIIMGLPK----------SA------HEFLPLALELLKD-GGIIHYYEFVPEDDIEE--RP 300 (341)
T ss_pred -----------hhccccCCEEEeCCCC----------cc------hhhHHHHHHHhhc-CcEEEEEeccchhhccc--ch
Confidence 1111456655555551 00 0123334444444 56667778888654321 25
Q ss_pred HHHHHHHHhcCCcEEEE
Q 000407 1280 FRLTLASLLEMGYQVRF 1296 (1558)
Q Consensus 1280 f~~il~~L~~~GYqv~~ 1296 (1558)
++.+..+...+||++..
T Consensus 301 ~~~i~~~~~~~~~~~~v 317 (341)
T COG2520 301 EKRIKSAARKGGYKVEV 317 (341)
T ss_pred HHHHHHHHhhccCcceE
Confidence 67777777888997654
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=90.06 E-value=2.2 Score=48.73 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=34.6
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..++||+.||.|.++.-+.+..-.....++|+++.+++.-+.|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 45899999999999998887522223479999999998777664
No 83
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=89.67 E-value=0.41 Score=52.82 Aligned_cols=108 Identities=21% Similarity=0.176 Sum_probs=58.9
Q ss_pred CceeeccccCchHHHHH--HhhcCCc-------EeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccc
Q 000407 1120 HLATLDIFAGCGGLSEG--LQQSGIS-------STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDC 1190 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslG--Le~AG~~-------~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~ 1190 (1558)
.-.++|-|||+|++-.= +..+.+. ...+++|+++.+++.-+.|.....+. +.+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---------------~~i--- 90 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---------------DYI--- 90 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---------------GGE---
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---------------Cce---
Confidence 45799999999998842 3333333 01479999999999888884221110 000
Q ss_pred cchhhHHHHHhhcchhhhcCCC-CCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhh-cCCcEEE
Q 000407 1191 VSTSEAAELAASLDENVINNLP-LPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADY-FQPRYFL 1264 (1558)
Q Consensus 1191 i~~~e~~el~~~l~~~~~~~lP-~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~-~rPk~fl 1264 (1558)
.+...+...+| ..+.+|+|+.-||= |+. -........|+..+++.+.. ++|..++
T Consensus 91 -----------~~~~~D~~~l~~~~~~~d~IvtnPPy------G~r--~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 91 -----------DFIQWDARELPLPDGSVDAIVTNPPY------GRR--LGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -----------EEEE--GGGGGGTTSBSCEEEEE--S------TTS--HCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred -----------EEEecchhhcccccCCCCEEEECcch------hhh--ccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 01112223344 45789999999994 221 11112234677777777765 7785443
No 84
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=89.44 E-value=0.81 Score=57.41 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=34.0
Q ss_pred ceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-++||++||.||.+.-+.+. +-...+.|+|+++..++..+.|.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~ 297 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENA 297 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHH
Confidence 46999999999999888663 22213579999999999888774
No 85
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=89.41 E-value=0.93 Score=53.69 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=35.5
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..++||++||.|.++..+....-...+.|+|+++.|++.-+.|.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 35799999999999999987532222479999999999888774
No 86
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=88.85 E-value=0.64 Score=57.31 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=36.0
Q ss_pred CceeeccccCchHHHHHHh-hcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQ-QSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe-~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..++||+|||+|.+++-+. ++|... ++|+|+++.|++..+.|.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~ 101 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNL 101 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHH
Confidence 3679999999999999874 467555 589999999999988874
No 87
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=88.24 E-value=1.3 Score=55.81 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=53.9
Q ss_pred ceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
-++||++||.||.+.-+.+. |-...++|+|+++.+++..+.|.....+ .++.. .++|..+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--~~v~~-------~~~D~~~---------- 312 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--TNIET-------KALDARK---------- 312 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEE-------EeCCccc----------
Confidence 46999999999999887653 1111357999999999988877422110 00000 1244311
Q ss_pred HhhcchhhhcCCCCCCceeEEEecCCCCCcccccc
Q 000407 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNR 1234 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr 1234 (1558)
+ ...+ ++.+|+|+-.|||.|+....+
T Consensus 313 ---~----~~~~--~~~fD~Vl~D~Pcsg~G~~~~ 338 (444)
T PRK14902 313 ---V----HEKF--AEKFDKILVDAPCSGLGVIRR 338 (444)
T ss_pred ---c----cchh--cccCCEEEEcCCCCCCeeecc
Confidence 0 0112 257999999999998765544
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=88.17 E-value=2.8 Score=39.33 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=31.6
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHH
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~ 1160 (1558)
+++|+.||.|+++..+.+.+... .+++|.++.+.+..+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCE-EEEEeCCHHHHHHHH
Confidence 47999999999999998854444 489999999988776
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=86.50 E-value=2.1 Score=51.75 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=34.1
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+|||.|++..-+...|... +++|+++.++..-+.|.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v--~g~Di~~~~~~~a~~nl 224 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKV--IGCDIDWKMVAGARINL 224 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeE--EEEcCCHHHHHHHHHHH
Confidence 4579999999999987666667653 79999999988777774
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=86.39 E-value=5.8 Score=43.09 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=35.4
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+.||.|.++..+...|.. ++++|+++.+.+..+.|.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~--v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKK--VVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcce--EEEEECCHHHHHHHHHHH
Confidence 357999999999999999888755 379999999998877764
No 91
>KOG2730 consensus Methylase [General function prediction only]
Probab=85.93 E-value=0.99 Score=50.88 Aligned_cols=82 Identities=26% Similarity=0.346 Sum_probs=56.9
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC-----CCCchhcchhhHHHHHHHhhcCCCccccchh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH-----PESLMLINNCNVILRAVMEKCGDAEDCVSTS 1194 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~-----P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~ 1194 (1558)
.-.++|-|||+||-..=|-.-|..+ .|||+||--+.--++|. |+-..| .|||+-|.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~V--isIdiDPikIa~AkhNaeiYGI~~rItF-------------I~GD~ld~---- 155 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYV--IAIDIDPVKIACARHNAEVYGVPDRITF-------------ICGDFLDL---- 155 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeE--EEEeccHHHHHHHhccceeecCCceeEE-------------EechHHHH----
Confidence 4568999999999999998888875 69999998888777773 332222 36876432
Q ss_pred hHHHHHhhcchhhhcCCCCCCceeEEEecCCCCCcccc
Q 000407 1195 EAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGM 1232 (1558)
Q Consensus 1195 e~~el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~a 1232 (1558)
.+.|... +..+|++.++||--|-|-.
T Consensus 156 -----~~~lq~~-------K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 156 -----ASKLKAD-------KIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred -----HHHHhhh-------hheeeeeecCCCCCCcchh
Confidence 3333211 1148999999987776654
No 92
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=85.82 E-value=1.6 Score=54.54 Aligned_cols=88 Identities=19% Similarity=0.152 Sum_probs=55.3
Q ss_pred ceeeccccCchHHHHHHhh-cCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~-AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
-++||++||.||.+.-+.+ .+ .-.++|+|+++..++..+.|.....+- ..+ ...+||...
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~---~~v-----~~~~~d~~~---------- 300 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT---IKA-----ETKDGDGRG---------- 300 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC---eEE-----EEecccccc----------
Confidence 5799999999999988765 33 223589999999999888875321100 000 000122210
Q ss_pred HhhcchhhhcCCCCCCceeEEEecCCCCCccccccC
Q 000407 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRF 1235 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~ 1235 (1558)
.......+.+|.|.-.+||.|+....+.
T Consensus 301 --------~~~~~~~~~fD~VllDaPcSg~G~~~~~ 328 (426)
T TIGR00563 301 --------PSQWAENEQFDRILLDAPCSATGVIRRH 328 (426)
T ss_pred --------ccccccccccCEEEEcCCCCCCcccccC
Confidence 0001123579999999999999877653
No 93
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=83.58 E-value=1.1 Score=54.70 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=34.4
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
++||||||.|.+++.|.+.. .. +.|+|+++.|++..+.|.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~-v~~vE~~~~av~~a~~n~ 239 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RR-VLATEIAKPSVNAAQYNI 239 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CE-EEEEECCHHHHHHHHHHH
Confidence 59999999999999887764 34 479999999999988874
No 94
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=83.53 E-value=1.3 Score=54.46 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=41.9
Q ss_pred CCceeeccccCch--HHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC--CC-----CchhcchhhHHH
Q 000407 1119 NHLATLDIFAGCG--GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH--PE-----SLMLINNCNVIL 1177 (1558)
Q Consensus 1119 ~kL~~lDLFAG~G--GlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~--P~-----~~~~~~~~n~il 1177 (1558)
.++++||.+||+| |+...+|-+|... +|++|+++.|++..+.|. .+ ..+.+.|+|.+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~-v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDK-VTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECE-EEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCE-EEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 3699999999999 7777888788876 599999999999999882 11 234466888776
No 95
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=83.08 E-value=0.91 Score=55.41 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=30.9
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
++||||||+|.+|+-|...+-. +.|+|+.+.|++.-+.|
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~--V~gvE~~~~av~~A~~N 237 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKK--VIGVEIVEEAVEDAREN 237 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSE--EEEEES-HHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHHHhhCCe--EEEeeCCHHHHHHHHHH
Confidence 6899999999999999776554 37999999998876666
No 96
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=82.97 E-value=3.3 Score=43.95 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCceeeccccCchHHHHHHh-hcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1119 NHLATLDIFAGCGGLSEGLQ-QSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe-~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
...++|||.||.|.+...|. +.+.....+++|+++.+++..+.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~ 47 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKR 47 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcc
Confidence 46789999999999999998 443222257999999999977764
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=82.96 E-value=1.6 Score=52.35 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=35.1
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.++||++||.|.++..+....-...+.|+|+++.|++.-+.|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5799999999999999877532223479999999999888884
No 98
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=82.29 E-value=2.5 Score=53.15 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=33.4
Q ss_pred ceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-++||+|||.||.+.-+.+. |-.-.++|+|+++..++..+.|.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~ 282 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA 282 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH
Confidence 47999999999999877653 11112479999999999888874
No 99
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=82.00 E-value=0.68 Score=54.20 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=38.0
Q ss_pred ceeeccccCchHHHH-HHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSE-GLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlsl-GLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
=.++|||||+|=+.+ =|-.||... ++|+|++|.|+++++.|-
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~-V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKT-VFACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeehhhccCccE-EEEEecCHHHHHHHHHHH
Confidence 458999999999999 888999986 599999999999999884
No 100
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=81.95 E-value=8.5 Score=43.22 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=34.4
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..-++||+.||.|.++..|.+..-...++++|+++.+++.-+.|.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~ 84 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKI 84 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHH
Confidence 356899999999999999866421222589999999998776653
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=80.74 E-value=3.2 Score=51.59 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=34.0
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-++|||+||.|.++..+....-...+.|+|+++.|++.-+.|.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3799999999999988865422222479999999999888874
No 102
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=79.99 E-value=22 Score=44.19 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=37.5
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
=++|+|||=.||+|.-.-.+|...+ .+||++..|++.-+.|+
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~v-t~VD~S~~al~~a~~N~ 260 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEV-TSVDLSKRALEWARENA 260 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCce-EEEeccHHHHHHHHHHH
Confidence 4699999999999999999999764 69999999999888875
No 103
>PRK03612 spermidine synthase; Provisional
Probab=76.81 E-value=29 Score=44.80 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=89.9
Q ss_pred CceeeccccCchHHHHHHhhcCC-cEeEEEEcCCHhHHHHHHHhC--CCCc--hhcc-hhhHHHHHHHhhcCCCccccch
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGI-SSTKWAIEYEEPAGEAFKLNH--PESL--MLIN-NCNVILRAVMEKCGDAEDCVST 1193 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~-~~~~~AvE~d~~A~~ty~~N~--P~~~--~~~~-~~n~il~~~~~~~GDi~d~i~~ 1193 (1558)
+-++|++-+|.|++..-+.+.+. .. +.++|+|+..++.-+.|+ +... .+.+ ..+. .++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~v-------i~~D------- 362 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTV-------VNDD------- 362 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEE-------EECh-------
Confidence 45799999999999988776543 44 479999999999888753 2110 0000 0000 0122
Q ss_pred hhHHHHHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHH-HHHH-HHHhhcCCcEEEEeccccc
Q 000407 1194 SEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI-LAFL-SFADYFQPRYFLLENVRNF 1271 (1558)
Q Consensus 1194 ~e~~el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv-~~fl-~~id~~rPk~flLENV~g~ 1271 (1558)
+.+.. ... ++..|+|+..+|-......++ |+ .+|+ .+.+.++|.-+++=|...-
T Consensus 363 --a~~~l--------~~~--~~~fDvIi~D~~~~~~~~~~~------------L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 363 --AFNWL--------RKL--AEKFDVIIVDLPDPSNPALGK------------LYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred --HHHHH--------HhC--CCCCCEEEEeCCCCCCcchhc------------cchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 11111 111 246899999877432111111 11 1233 2335678987776555332
Q ss_pred cccccchhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeec
Q 000407 1272 VSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS 1319 (1558)
Q Consensus 1272 ls~~~g~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar 1319 (1558)
. .....+..+.+.|.+.|+.+.....+--.|| .--|++|+.
T Consensus 419 ~--~~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-----~w~f~~as~ 459 (521)
T PRK03612 419 Y--FAPKAFWSIEATLEAAGLATTPYHVNVPSFG-----EWGFVLAGA 459 (521)
T ss_pred c--cchHHHHHHHHHHHHcCCEEEEEEeCCCCcc-----hhHHHeeeC
Confidence 1 1245678899999999997776666656664 455777754
No 104
>PRK07402 precorrin-6B methylase; Provisional
Probab=75.91 E-value=3.5 Score=45.87 Aligned_cols=44 Identities=23% Similarity=0.117 Sum_probs=34.2
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||++||.|.++..+.+.+-...++++|+++.+++..+.|.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~ 84 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC 84 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 35799999999999988865421112479999999999888774
No 105
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=74.90 E-value=5.1 Score=46.76 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=37.1
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
.-++||+-||.|.++..+.+.+.. ++|+|+++..++..+.++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~--v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKK--VYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCE--EEEEECCHHHHHHHHHHhc
Confidence 457999999999999999998754 4799999999998887764
No 106
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=74.64 E-value=3.2 Score=53.40 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.6
Q ss_pred CCceeeccccCchHHHHHHhhc--------CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS--------GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A--------G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
...+++|.+||+|++-.++... ++....+++|+|+.|+...+.|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 4679999999999999888542 23344689999999999877774
No 107
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=73.48 E-value=7.4 Score=46.29 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=35.6
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++|||||=.||+|+..-.+|...+ ++||.+..|++.-+.|+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v-~~VD~S~~al~~a~~N~ 166 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEV-VSVDSSKRALEWAKENA 166 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEE-EEEES-HHHHHHHHHHH
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEE-EEEeCCHHHHHHHHHHH
Confidence 35899999999999999889998874 79999999998877774
No 108
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=72.27 E-value=6.1 Score=45.90 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=37.7
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
.-++||+.||.|.++..|.+.+.. +.++|+|+.+++..+.++.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhC
Confidence 468999999999999999998865 4799999999998888764
No 109
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=71.05 E-value=5.3 Score=44.01 Aligned_cols=44 Identities=27% Similarity=0.090 Sum_probs=35.1
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+.||+|.++..+.+.+-...+.++|+++.+++..+.|.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 45799999999999999877543222479999999998877764
No 110
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=70.77 E-value=6.2 Score=46.43 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=37.4
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
.-++||+-||.|.++.-|.+.|.. +.|+|+++.+++..+.|+.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~--v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAK--VTAVEIDRDLAPILAETFA 85 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCc--EEEEECCHHHHHHHHHhhc
Confidence 458999999999999999988764 4799999999999888773
No 111
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=69.74 E-value=6 Score=48.23 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=33.2
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
++|||.||.|.++.-+.+.+-...+.++|+++.|++.-+.|.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL 240 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 699999999999998877543222479999999998766653
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=69.65 E-value=6.6 Score=46.85 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=40.3
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+..++||+=||.|-|+.+..+.|...+ .|+|+||.|+++=+.|.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v-~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKV-VGVDIDPQAVEAARENA 205 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceE-EEecCCHHHHHHHHHHH
Confidence 578999999999999999999999974 89999999999988773
No 113
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=68.80 E-value=6.4 Score=46.76 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=37.3
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+.||.|.++..+.+.|... +.|+|+++.|++.-+.|.
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~-V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAK-VVGIDIDPLAVESARKNA 202 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCe-EEEEECCHHHHHHHHHHH
Confidence 4689999999999999998888765 489999999998877774
No 114
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=67.39 E-value=7.3 Score=45.21 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=38.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..-++||+.||.|.++..+...|... ++|+|+++.+++.-+.|.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~-v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKK-VLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCe-EEEEECCHHHHHHHHHHH
Confidence 35689999999999999999888875 589999999999877774
No 115
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=67.16 E-value=9.2 Score=37.83 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=36.5
Q ss_pred ceeeccccCchHHHHHHhh--cCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQ--SGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~--AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-++|||=||.|.++.-|.+ .|..+ .|+|+++.+++..+.|.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v--~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARV--VGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEE--EEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 4789999999999999998 77764 69999999999988886
No 116
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=67.12 E-value=6.5 Score=46.55 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=35.3
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.+++|++||.|.+++.+...+-...+.|+|+++.|++.-+.|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 5899999999999999987543222479999999999888873
No 117
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=66.84 E-value=5.4 Score=52.72 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=90.4
Q ss_pred CCcccccccccccccccccceeeccccceEEeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEc
Q 000407 902 LGVGSCHACGTKESEKEKETFKVHSKTSFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIV 981 (1558)
Q Consensus 902 ~~~~~C~sC~~~e~~~~ke~~~v~~~~~f~~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~ 981 (1558)
.+...|..|.......-+ +++-. +.++..|.++|.|++.... .+||.|+.|...-.
T Consensus 117 dg~sn~~g~v~a~rqdT~-----ls~~~-s~~e~~y~~~~~l~~~v~~------------------~~p~lia~~~~~~~ 172 (1229)
T KOG2133|consen 117 DGGSNCRGIVYAYRQDTD-----LSGFQ-SHDETLYDLRDSLFVEVSQ------------------PEPYLIAAICGFKY 172 (1229)
T ss_pred CCCCCCccchhhhhcccc-----chhhc-cccchhhhhhhhhhhhhcc------------------CCccccccccCccc
Confidence 455667777755443222 12222 5678889999999999874 37888877755432
Q ss_pred cCCCcccccCceEEEEEEeeccccCCccc---------c---------ccCCCceEEeecce-eeeecceEeeeeEEeec
Q 000407 982 PKEPKRAEVKSTQVKVRRFFRPDDISAEK---------A---------YCSDIREVYYSEET-HLIFVEAIAGKCEVRKK 1042 (1558)
Q Consensus 982 ~~~~~k~~~~~~~vkVrwFyRPEDi~~~~---------~---------~~~D~rELf~Sde~-~~vpv~~I~GKC~V~~~ 1042 (1558)
.++ +..+.++.-.++|++|+.... + ...-.++||.|.-. .+-|.+|..|||++.+.
T Consensus 173 ~Kr-----~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~sq~l~~s~l~~i~qppscp~gk~~~~~s 247 (1229)
T KOG2133|consen 173 TKR-----DDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPLSQELFNSELQGITQPPSCPRGKGIAEYS 247 (1229)
T ss_pred ccc-----ccccccccccccccccCcccccccccCchhhhhccCCccCCCcchhhhhcccccCCCCCCcCCCCCceEEee
Confidence 222 245667888889999886211 0 11235788888877 88899999999999987
Q ss_pred CCCCCCC---CC-cccCCeEEEEEeecCCCCcc
Q 000407 1043 NDIPACN---AP-AIFQHIFFCEHLHDPSKGSL 1071 (1558)
Q Consensus 1043 ~d~~~~~---~~-~~~dd~Fyce~~YD~~~~~~ 1071 (1558)
.|..... +. ...-++||.-..|.+-++..
T Consensus 248 kd~~h~~~~n~p~~ld~~i~fk~agglpps~k~ 280 (1229)
T KOG2133|consen 248 KDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKP 280 (1229)
T ss_pred cccccCCccCCCCcccceeeeecccCCCCCCCC
Confidence 7764322 12 22236666666777655443
No 118
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=66.66 E-value=6.6 Score=46.91 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=37.1
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
-++||+=||.|-|+.+....|... +.|+|+|+.|+++-+.|
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~-v~a~DiDp~Av~~a~~N 203 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKK-VVAIDIDPLAVEAAREN 203 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSE-EEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCe-EEEecCCHHHHHHHHHH
Confidence 499999999999999999999987 48999999999998887
No 119
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=66.33 E-value=18 Score=38.49 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=40.9
Q ss_pred ceeEEEEEcCEEEecCCeEEEecCC----------CCCCCeEEEEEEEeeeCCC-------ceEEEEEEEee
Q 000407 752 ALYKKAIVHGEVVSLGSAVLVEVDE----------LDQLPVIYFVEYMFEATGG-------CKLFHGIIMQR 806 (1558)
Q Consensus 752 ~~Y~~a~v~g~~~~vGD~V~V~~~~----------~~~~p~I~~Ie~m~e~~~g-------~kmfh~~WF~r 806 (1558)
.||+.+.+|-|.|.|||.|.|.+.. ......|..|..|...... .-+|.|..|.-
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~~~~~~~~~~~v~~~G~lY~~ 72 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRLINCDPDSPSTVRFRGDLYTL 72 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEecccCCCCCCceEEEEeEecee
Confidence 3899999999999999999995532 1233468888888877544 36677776654
No 120
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=64.64 E-value=95 Score=34.87 Aligned_cols=43 Identities=33% Similarity=0.251 Sum_probs=37.2
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
=.++|+=||+|+++.=+..+|-...++|+|-++.|+++.+.|.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~ 78 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNA 78 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHH
Confidence 3799999999999887777777766799999999999999984
No 121
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=63.81 E-value=10 Score=48.79 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=34.2
Q ss_pred CceeeccccCchHHHHHHhhc--CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A--G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..++||++||.|.++..+... +.. +.|+|+++.|++.-+.|.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~--v~avDis~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN--VIATDISLDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe--EEEEECCHHHHHHHHHHH
Confidence 358999999999999887643 333 479999999999888874
No 122
>PRK10742 putative methyltransferase; Provisional
Probab=62.77 E-value=11 Score=43.83 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=37.6
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
...++||+|||.|..+.=+-..|+.+ .++|-++.++...+.|.
T Consensus 88 ~~p~VLD~TAGlG~Da~~las~G~~V--~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 88 YLPDVVDATAGLGRDAFVLASVGCRV--RMLERNPVVAALLDDGL 130 (250)
T ss_pred CCCEEEECCCCccHHHHHHHHcCCEE--EEEECCHHHHHHHHHHH
Confidence 35699999999999999998899984 68999999999888774
No 123
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=62.59 E-value=9.5 Score=44.40 Aligned_cols=42 Identities=31% Similarity=0.245 Sum_probs=33.7
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
.-++|||.||+|.+++-+.+- .-.. ..+||+++.+++--+.|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~n 87 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRN 87 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHH
Confidence 678999999999999998764 4233 36999999988866666
No 124
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=61.77 E-value=12 Score=37.46 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=32.4
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
-+++||+||.|.++.-+.+..-...++++|+++.+++.-+.|
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN 62 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence 489999999999999886642112248999999998876655
No 125
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=61.02 E-value=10 Score=43.71 Aligned_cols=47 Identities=38% Similarity=0.299 Sum_probs=40.1
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCc
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESL 1167 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~ 1167 (1558)
..+++||+=||.|-||+-+.+.|..+ .|+|+++.++++=++.-....
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~V--tgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASV--TGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCee--EEecCChHHHHHHHHhhhhcc
Confidence 57999999999999999999999875 599999999998776554433
No 126
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=60.06 E-value=21 Score=41.24 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=36.9
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~ 1165 (1558)
.-++||+=||.|.++.-|...|.. +.++|+++.+++.-+.+.+.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~--v~~~D~s~~~l~~a~~~~~~ 86 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQ--VTALDLSPPMLAQARQKDAA 86 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCe--EEEEECCHHHHHHHHhhCCC
Confidence 467999999999999988887765 47999999999988877653
No 127
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=60.01 E-value=16 Score=46.59 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..-++||++||.||-+.-+.+. +-.-.++|+|+++..+...+.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl 158 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANI 158 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3468999999999999887653 11113589999999999988874
No 128
>PLN02672 methionine S-methyltransferase
Probab=59.58 E-value=14 Score=51.27 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=35.3
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.+++||.||.|.+++.+...+-...+.|+|+++.|++.-+.|.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 4799999999999999977543223589999999999888874
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=59.58 E-value=2.9e+02 Score=34.44 Aligned_cols=161 Identities=12% Similarity=0.047 Sum_probs=86.4
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~e 1198 (1558)
+-++|+|=+|.|+...-+-+. +... +.+||+|+..++.-+. +|....++... ..|..=-+...++.+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~-~~~L~~~~~~~----------~~DpRV~vvi~Da~~ 218 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARN-VPELVSLNKSA----------FFDNRVNVHVCDAKE 218 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHh-ccccchhcccc----------CCCCceEEEECcHHH
Confidence 458999999988876655554 4454 4689999998887664 33211110000 000000000011111
Q ss_pred HHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHH-HHHHHHH-hhcCCcEEEEecccccccccc
Q 000407 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI-LAFLSFA-DYFQPRYFLLENVRNFVSFNK 1276 (1558)
Q Consensus 1199 l~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv-~~fl~~i-d~~rPk~flLENV~g~ls~~~ 1276 (1558)
.. .. ..+..|+|+.-+| -+. +.. -+.|+ .+|++.+ ..++|.-+++=+...... .
T Consensus 219 fL--------~~--~~~~YDVIIvDl~-DP~---~~~--------~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~ 274 (374)
T PRK01581 219 FL--------SS--PSSLYDVIIIDFP-DPA---TEL--------LSTLYTSELFARIATFLTEDGAFVCQSNSPAD--A 274 (374)
T ss_pred HH--------Hh--cCCCccEEEEcCC-Ccc---ccc--------hhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--h
Confidence 11 11 1246899998865 111 110 01232 3444443 467898665433322211 2
Q ss_pred chhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeecC
Q 000407 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASP 1320 (1558)
Q Consensus 1277 g~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar~ 1320 (1558)
...+..+.+.|...|..+.......-.||-. -.|++|+..
T Consensus 275 ~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~----WgF~~as~~ 314 (374)
T PRK01581 275 PLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD----WGFHIAANS 314 (374)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEecCCCCCc----eEEEEEeCC
Confidence 3455678888999999988777777777642 778888653
No 130
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=59.23 E-value=32 Score=42.29 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=37.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCc--EeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGIS--STKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~--~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+.-++||++|+.||=+.=+-++.-. .+++|+|.++..+...+.|-
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl 202 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENL 202 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHH
Confidence 4588999999999999888776543 23489999999999988884
No 131
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=59.05 E-value=14 Score=43.44 Aligned_cols=43 Identities=30% Similarity=0.256 Sum_probs=35.7
Q ss_pred CceeeccccCchHHHHHHhh-cCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~-AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+...+|+|||.|.+|+++-. .+ .+++.|+|.++.|+..-..|-
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHH
Confidence 44799999999999999854 44 566789999999999877773
No 132
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=58.68 E-value=13 Score=41.57 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=33.2
Q ss_pred CceeeccccCchHHHHHHhh-cCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~-AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
.-+++|++||+|.++..+.. .|-...++|+|+++.+++.-+.|
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 45799999999999998754 33322358999999999876666
No 133
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=58.62 E-value=13 Score=42.35 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=35.0
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~ 1160 (1558)
.-++||+.||.|--+.-|.+.|+.+ .|+|+++.|++...
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V--~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRV--LGVELSEIAVEQFF 73 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeE--EEEeCCHHHHHHHH
Confidence 4699999999999999999999986 59999999999653
No 134
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=58.01 E-value=17 Score=41.04 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..-++||+.||.|.++.-|.+. +....++++|+++.+++.-+.|.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~ 122 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL 122 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3468999999999999877664 32222479999999988776664
No 135
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=57.93 E-value=24 Score=40.80 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCceeeccccCchHHHHHHhhcC-CcEeEEEEcCCHhHHHHHHHhCCCCc
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSG-ISSTKWAIEYEEPAGEAFKLNHPESL 1167 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG-~~~~~~AvE~d~~A~~ty~~N~P~~~ 1167 (1558)
..-++||+-||.|.++.-|.+.. ... +.++|+++.+++.-+.++++..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~ 79 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQ 79 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCe
Confidence 34689999999999998887652 222 4799999999998888876543
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=57.83 E-value=46 Score=42.27 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.8
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty 1159 (1558)
.-++|||.||.|.++..|.+.+.. +.++|+++.+++.-
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~--v~giD~s~~~l~~a 75 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQ--VIALDFIESVIKKN 75 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCE--EEEEeCCHHHHHHH
Confidence 347999999999999999887654 37999999988753
No 137
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=55.09 E-value=14 Score=45.75 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=34.5
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-++|||.||.|.++.-+.+.+-...+.++|.++.|++.-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3899999999999998877643222479999999998877764
No 138
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=54.80 E-value=15 Score=44.75 Aligned_cols=143 Identities=24% Similarity=0.216 Sum_probs=84.7
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el~ 1200 (1558)
=.++|-|||.||+-.-...-|..+ .++|++...++--+.|+-.-. +.+..
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~~v--iG~Did~~mv~gak~Nl~~y~-------------------i~~~~--------- 248 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGARV--IGSDIDERMVRGAKINLEYYG-------------------IEDYP--------- 248 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCceE--eecchHHHHHhhhhhhhhhhC-------------------cCcee---------
Confidence 369999999999988777778876 589999999988777753211 11100
Q ss_pred hhcchhhhcCCCCCCc-eeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHh-hcCCc-EEEEeccccccccccc
Q 000407 1201 ASLDENVINNLPLPGQ-VDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFAD-YFQPR-YFLLENVRNFVSFNKG 1277 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pG~-VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id-~~rPk-~flLENV~g~ls~~~g 1277 (1558)
.+...+..++|.++. ||-|+.=||= ||..... ...-..|+..+++.+. .++|. +++| ...
T Consensus 249 -~~~~~Da~~lpl~~~~vdaIatDPPY------Grst~~~-~~~l~~Ly~~~le~~~evLk~gG~~vf------~~p--- 311 (347)
T COG1041 249 -VLKVLDATNLPLRDNSVDAIATDPPY------GRSTKIK-GEGLDELYEEALESASEVLKPGGRIVF------AAP--- 311 (347)
T ss_pred -EEEecccccCCCCCCccceEEecCCC------Ccccccc-cccHHHHHHHHHHHHHHHhhcCcEEEE------ecC---
Confidence 011112344666665 9999999993 3322111 1123567777776554 45552 2322 111
Q ss_pred hhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEe
Q 000407 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWA 1317 (1558)
Q Consensus 1278 ~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIva 1317 (1558)
......+.++||.|...+-.= +=++=.|.|.+.
T Consensus 312 ---~~~~~~~~~~~f~v~~~~~~~----~H~sLtR~i~v~ 344 (347)
T COG1041 312 ---RDPRHELEELGFKVLGRFTMR----VHGSLTRVIYVV 344 (347)
T ss_pred ---CcchhhHhhcCceEEEEEEEe----ecCceEEEEEEE
Confidence 234556778899886554443 334445776654
No 139
>PRK06922 hypothetical protein; Provisional
Probab=54.66 E-value=43 Score=44.21 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=33.9
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..++||+.||.|.++.-|.+..-....+|+|+++.+++..+.+.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl 462 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK 462 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 46899999999999888865321112479999999998877764
No 140
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=54.58 E-value=1.1e+02 Score=33.93 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=32.3
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
+-++|||-||.|.++..+.+..-.....++|+++.+++.-+.|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~ 59 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNK 59 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH
Confidence 4589999999999999888763222347999999877654443
No 141
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=54.52 E-value=9.3 Score=42.84 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=40.5
Q ss_pred cCCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1118 ~~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
-+..+||||.||.|-.+..--.+|... +++.|+++.+.++..+|-
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~-v~a~d~~P~~~~ai~lNa 122 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAE-VVAADIDPWLEQAIRLNA 122 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHH-HHhcCCChHHHHHhhcch
Confidence 357899999999999999999999997 489999999999988884
No 142
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=54.19 E-value=13 Score=41.92 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=36.8
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
...++||+.||.|.++.-+...+.. ++++|+++.++..-+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~--v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAI--VKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCE--EEEEECCHHHHHHHHHHHH
Confidence 3578999999999999999887764 4799999999988777654
No 143
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=53.76 E-value=18 Score=40.41 Aligned_cols=41 Identities=22% Similarity=0.067 Sum_probs=35.7
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..++||+-||.|.++.-|.+.|+.+ .|+|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V--~gvD~S~~~i~~a~~~ 71 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDV--TAWDKNPMSIANLERI 71 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEE--EEEeCCHHHHHHHHHH
Confidence 4689999999999999999999864 6999999999877665
No 144
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=53.65 E-value=25 Score=39.89 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=33.6
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+.||.|.++.-+.+. |-...+.++|+++.+++.-+.|.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~ 90 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV 90 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 468999999999999888654 32222479999999888776664
No 145
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=53.57 E-value=18 Score=43.69 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=37.4
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
..++||+.||.|.++.-|.+.|..+ .++|+++.+++.-+.|.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V--~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIV--SASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEE--EEEECCHHHHHHHHHHHH
Confidence 5789999999999999999988764 699999999988777754
No 146
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=53.49 E-value=17 Score=46.12 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=31.9
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
-.++|+|||.|-+++.+.+ |+.. +.+||+++.|+.--+.|
T Consensus 385 k~llDv~CGTG~iglala~-~~~~-ViGvEi~~~aV~dA~~n 424 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALAR-GVKR-VIGVEISPDAVEDAEKN 424 (534)
T ss_pred cEEEEEeecCCceehhhhc-cccc-eeeeecChhhcchhhhc
Confidence 4589999999999999965 4554 47999999998755555
No 147
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=53.05 E-value=2.4e+02 Score=33.20 Aligned_cols=156 Identities=10% Similarity=0.015 Sum_probs=83.1
Q ss_pred ceeeccccCchHHHHHHhhcC-CcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSG-ISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG-~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
-++|+|.+|.|++..-+...+ ... ..++|+++..++..+.++|......++- .+ +++ ..++.+.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~------------~v-~i~-~~D~~~~ 138 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDP------------RV-DLQ-IDDGFKF 138 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCC------------ce-EEE-ECchHHH
Confidence 389999999999998776654 444 4789999999988887765422100000 00 000 0111111
Q ss_pred HhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhH-HHHHHH-HHhhcCCcEEEEeccccccccccc
Q 000407 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM-ILAFLS-FADYFQPRYFLLENVRNFVSFNKG 1277 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~L-v~~fl~-~id~~rPk~flLENV~g~ls~~~g 1277 (1558)
. ... ++..|+|+..++-. .+... .| ..+|++ +.+.++|.-+++=|...-. -..
T Consensus 139 l--------~~~--~~~yDvIi~D~~~~-~~~~~------------~l~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~ 193 (270)
T TIGR00417 139 L--------ADT--ENTFDVIIVDSTDP-VGPAE------------TLFTKEFYELLKKALNEDGIFVAQSESPW--IQL 193 (270)
T ss_pred H--------HhC--CCCccEEEEeCCCC-CCccc------------chhHHHHHHHHHHHhCCCcEEEEcCCCcc--cCH
Confidence 1 111 24689998865422 11110 11 123333 3356789877665644321 123
Q ss_pred hhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeec
Q 000407 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS 1319 (1558)
Q Consensus 1278 ~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar 1319 (1558)
..+..+++.|.+..=.+.......-.|+. -.-.|++|.+
T Consensus 194 ~~~~~~~~tl~~~F~~v~~~~~~vp~~~~---g~~~~~~as~ 232 (270)
T TIGR00417 194 ELITDLKRDVKEAFPITEYYTANIPTYPS---GLWTFTIGSK 232 (270)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEcCcccc---chhEEEEEEC
Confidence 46677777777654444444443333322 1236888865
No 148
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=52.99 E-value=11 Score=43.55 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=28.9
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~ 1160 (1558)
..-+++|+|||+|++++.+.+.+.. ++++|+++..+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~~--vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGKR--VIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SSE--EEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccccc--eeeeechHHHHHHHH
Confidence 5678999999999999998765554 378999999888777
No 149
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=52.60 E-value=18 Score=40.27 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=30.8
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAF 1159 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty 1159 (1558)
.=.|||.|||.|.......+.|-+. .++|+++..++.-
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~R~~--ig~E~~~~y~~~a 229 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELGRRY--IGIEIDEEYCEIA 229 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT-EE--EEEESSHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHcCCeE--EEEeCCHHHHHHh
Confidence 4469999999999999999999886 5999999988753
No 150
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=52.58 E-value=20 Score=41.36 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE 1165 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~ 1165 (1558)
...++||+-||.|+++.-|.+.|... ++|+|+.+.-+..-..++|.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~-v~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKE-VYGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCE-EEEEeCCHHHHHHHHhcCCC
Confidence 35689999999999999999999876 48999999655543333344
No 151
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=51.76 E-value=19 Score=41.19 Aligned_cols=39 Identities=23% Similarity=0.071 Sum_probs=34.9
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~ 1160 (1558)
.-++||+.||.|--++-|-+.|+.+ .|+|+++.|++.+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V--~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEV--LGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeE--EEEccCHHHHHHHH
Confidence 4589999999999999999999985 59999999999753
No 152
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=50.13 E-value=23 Score=43.29 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred CceeeccccCch--HHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC----C-CCchhcchhhHHHHH
Q 000407 1120 HLATLDIFAGCG--GLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH----P-ESLMLINNCNVILRA 1179 (1558)
Q Consensus 1120 kL~~lDLFAG~G--GlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~----P-~~~~~~~~~n~il~~ 1179 (1558)
..+++|-|||.| |+...+| +|... +|++|++|.|.+.-+.|. + +..+++.|+|.++..
T Consensus 53 ~~~v~DalsatGiRgIRya~E-~~~~~-v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE-TGVVK-VVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred CeEEeecccccchhHhhhhhh-cCccE-EEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 688999999999 5555554 44444 589999999999988773 2 355667899998865
No 153
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=49.56 E-value=19 Score=40.56 Aligned_cols=44 Identities=27% Similarity=0.257 Sum_probs=37.3
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
...++||+.||.|.++..|.+.|.. +.++|+++.+++.-+.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~--v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAK--VVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCE--EEEEECCHHHHHHHHHHHH
Confidence 3578999999999999999888876 4799999999887776643
No 154
>PRK04148 hypothetical protein; Provisional
Probab=48.91 E-value=27 Score=37.07 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=36.5
Q ss_pred CceeeccccCchH-HHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGG-LSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GG-lslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
..+++++=+|.|. ++.-|.+.|+.+ .|+|+++.|++..+.+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~V--iaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDV--IVIDINEKAVEKAKKLG 59 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEE--EEEECCHHHHHHHHHhC
Confidence 4789999999886 999999999875 59999999999877774
No 155
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=48.50 E-value=20 Score=39.78 Aligned_cols=43 Identities=14% Similarity=-0.032 Sum_probs=32.3
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..++||+-||.|.++.-|...+-...++|+|.++.+++..+.|
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~ 85 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREV 85 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHH
Confidence 5689999999999888776544322257999999887765544
No 156
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=47.28 E-value=25 Score=42.69 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=35.9
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
...++||+-||.|.+++-|.+.|..+ +++|.++.+++..+.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V--~GID~s~~~i~~Ar~~ 172 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATV--TGVDAVDKNVKIARLH 172 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEE--EEEeCCHHHHHHHHHH
Confidence 35689999999999999998888763 7999999998877655
No 157
>PRK05785 hypothetical protein; Provisional
Probab=45.86 E-value=67 Score=36.84 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=32.6
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKL 1161 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~ 1161 (1558)
.-++|||-||.|-++.-|.+. |.. +.++|+++..++.-+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~--v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYY--VVALDYAENMLKMNLV 92 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCE--EEEECCCHHHHHHHHh
Confidence 458999999999999998877 444 4799999998886443
No 158
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=45.67 E-value=27 Score=39.40 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=38.3
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCCCCc
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHPESL 1167 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P~~~ 1167 (1558)
.-++||+=||.|-+...|.+. +... ..|+|+++.+++..+.|+++..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~ 91 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNIN 91 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCc
Confidence 346999999999999999875 3333 4799999999999998887643
No 159
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=43.71 E-value=33 Score=39.85 Aligned_cols=43 Identities=19% Similarity=0.083 Sum_probs=37.2
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.+.++||+-||.|.++.-|.+.|..+ .++|+++.+++.-+.+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v--~~vD~s~~~l~~a~~~~ 86 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQV--ILCDLSAEMIQRAKQAA 86 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEE--EEEECCHHHHHHHHHHH
Confidence 45799999999999999999998764 69999999998777664
No 160
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=42.41 E-value=1e+02 Score=34.22 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCcE-eEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISS-TKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~-~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~ 1197 (1558)
..|.+|+|=.|.|-+...+-.-|+.. ...|+|+++.-...+.+-+|+...++ ||.-
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~--------------gda~--------- 104 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIIN--------------GDAF--------- 104 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccc--------------cchh---------
Confidence 46899999999999999999999884 46899999999999999999987665 4421
Q ss_pred HHHhhcchhhhcCCCCCCceeEEEecCCCCCcccc
Q 000407 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGM 1232 (1558)
Q Consensus 1198 el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~a 1232 (1558)
.+...+.+. . ...+|.++-|-|--.|+..
T Consensus 105 ~l~~~l~e~---~---gq~~D~viS~lPll~~P~~ 133 (194)
T COG3963 105 DLRTTLGEH---K---GQFFDSVISGLPLLNFPMH 133 (194)
T ss_pred hHHHHHhhc---C---CCeeeeEEeccccccCcHH
Confidence 111112211 1 1268999999998777754
No 161
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=42.34 E-value=42 Score=37.74 Aligned_cols=44 Identities=16% Similarity=-0.011 Sum_probs=34.7
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
...++||+.||.|.++.-|...+.. ++++|+++.+++.-+.|+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~--v~~vd~~~~~~~~a~~~~~ 121 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRR--VFSVERIKTLQWEAKRRLK 121 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCE--EEEEeCCHHHHHHHHHHHH
Confidence 4578999999999999877666433 4799999998887766643
No 162
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=41.76 E-value=31 Score=40.96 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=34.3
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
++||+=||.|..+.-|.+.|+.+ .|+|+++.|++..+.|
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V--~avD~s~~ai~~~~~~ 161 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDV--TAVDINQQSLENLQEI 161 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEE--EEEECCHHHHHHHHHH
Confidence 89999999999999998889764 6999999999876655
No 163
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=41.21 E-value=38 Score=30.39 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=26.8
Q ss_pred EecCCeEEEecCCCCCCCeEEEEEEEeee-CCCceEEEEEEEeeccc
Q 000407 764 VSLGSAVLVEVDELDQLPVIYFVEYMFEA-TGGCKLFHGIIMQRGSH 809 (1558)
Q Consensus 764 ~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~-~~g~kmfh~~WF~rg~e 809 (1558)
|++||.|.+..+.|. .-|++.-.. -....|+.++||--..+
T Consensus 1 f~~GDvV~LKSGGp~-----MTV~~v~~~~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPR-----MTVTEVGPNAGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCCCCEEEEccCCCC-----eEEEEccccccCCCCeEEEEeCCCCCc
Confidence 578999999998753 223333222 23457999999975443
No 164
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=41.09 E-value=32 Score=33.75 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=30.2
Q ss_pred eeccccCchHHHHHHhhc---CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1123 TLDIFAGCGGLSEGLQQS---GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1123 ~lDLFAG~GGlslGLe~A---G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+|||-||.|-....|... |.....+++|+++.+++..+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~ 44 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF 44 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc
Confidence 589999999999999876 53233589999999999888776
No 165
>PRK04266 fibrillarin; Provisional
Probab=39.88 E-value=37 Score=39.07 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=32.9
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
.-++||+-||+|+++..|.+. | .-.++|+|+++.+++.+..+
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHH
Confidence 458999999999999999774 3 22368999999888765544
No 166
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=38.64 E-value=44 Score=34.75 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=36.2
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+++|+-||.|-.+..+.+.|.....+++|.++.+.+.++.|+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence 479999999999999998876634689999999999888874
No 167
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=38.59 E-value=43 Score=37.73 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=33.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFK 1160 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~ 1160 (1558)
++-++|||=||-|--++=|.+.|+.+ .|+|+++.|++..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~V--tAvD~s~~al~~l~ 69 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDV--TAVDISPVALEKLQ 69 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EE--EEEESSHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeE--EEEECCHHHHHHHH
Confidence 35789999999999999999999986 59999999998643
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=37.24 E-value=50 Score=40.14 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=34.2
Q ss_pred cCCceeeccccCchHHHHHH--hhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1118 ENHLATLDIFAGCGGLSEGL--QQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1118 ~~kL~~lDLFAG~GGlslGL--e~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
....++|||-||+|++..-| ...|... .|+|+|+.|++.-+.|.
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~--~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRF--VGSDIDPQALASAQAII 158 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 35689999999999887655 3346654 69999999999877763
No 169
>PRK06202 hypothetical protein; Provisional
Probab=37.23 E-value=51 Score=37.63 Aligned_cols=45 Identities=29% Similarity=0.282 Sum_probs=35.4
Q ss_pred CCceeeccccCchHHHHHHhh----cCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQ----SGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~----AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
...++|||-||.|.++..|.+ .|....+.++|+++.+++.-+.+.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 457899999999999888753 465433589999999998776664
No 170
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=36.29 E-value=1.3e+02 Score=35.96 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=34.4
Q ss_pred CceeeccccCchHHHHHHhhcCC-cEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGI-SSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~-~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||++||.||=+.-+.+.-. .-..+|+|+++..+...+.|.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~ 130 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENL 130 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHH
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHH
Confidence 45599999999999987766422 333589999999999887773
No 171
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=36.04 E-value=38 Score=40.37 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCceeeccccCchHHHHHHhhc-------CCcEeEEEEcCCHhHHHHHHHh
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS-------GISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A-------G~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..-+++|.+||.||+-..+.+. ......+++|+++.++..-+.|
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhh
Confidence 4567999999999998877551 2233458999999999876655
No 172
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=35.78 E-value=51 Score=37.46 Aligned_cols=43 Identities=28% Similarity=0.249 Sum_probs=35.6
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
+..++||+.||.|.++.-+.+.|.. .+++|+++.+++.-+.|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~--v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGAD--VTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCe--EEEEcCCHHHHHHHHHHH
Confidence 4578999999999999999888865 379999999887666654
No 173
>PLN02244 tocopherol O-methyltransferase
Probab=35.68 E-value=47 Score=40.52 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHh
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..-++||+-||.|+++.-|.+. |..+ .++|+++.+++.-+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v--~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANV--KGITLSPVQAARANAL 160 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEE--EEEECCHHHHHHHHHH
Confidence 4568999999999999998875 6654 6999999888765554
No 174
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=35.43 E-value=51 Score=34.49 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=34.3
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEA 1158 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~t 1158 (1558)
...++||+=||.|.+...|.+.|+. ..++|+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~--~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFE--VTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSE--EEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCE--EEEEECCHHHHhh
Confidence 4679999999999999999999995 3699999999987
No 175
>PLN02823 spermine synthase
Probab=35.02 E-value=8.9e+02 Score=29.77 Aligned_cols=160 Identities=10% Similarity=0.071 Sum_probs=85.3
Q ss_pred CceeeccccCchHHHHHHhh-cCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQ-SGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~-AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~e 1198 (1558)
+-++|-|=.|.|++..-+-+ .+... +.++|+|+.-++.-+.++|......+|-++ .-..+|. ..
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv-----~v~~~Da---------~~ 168 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRL-----ELIINDA---------RA 168 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCce-----EEEEChh---------HH
Confidence 34677777777776664444 45554 468999999999988887642110000000 0001221 11
Q ss_pred HHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHH-HHHHH--HHhhcCCcEEEEeccccccccc
Q 000407 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMI-LAFLS--FADYFQPRYFLLENVRNFVSFN 1275 (1558)
Q Consensus 1199 l~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv-~~fl~--~id~~rPk~flLENV~g~ls~~ 1275 (1558)
. | ... .+..|+|+.-.+ .+.+. +. . ..|+ .+|++ +.+.++|.-+++=|+...-.+.
T Consensus 169 ~---L-----~~~--~~~yDvIi~D~~-dp~~~-~~----~-----~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~ 227 (336)
T PLN02823 169 E---L-----EKR--DEKFDVIIGDLA-DPVEG-GP----C-----YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILT 227 (336)
T ss_pred H---H-----hhC--CCCccEEEecCC-Ccccc-Cc----c-----hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhc
Confidence 1 1 111 246899988753 11111 00 0 0111 24444 3467899987766654321122
Q ss_pred cchhHHHHHHHHhcCCcEEEEEEEecCCCCCCCCccEEEEEeec
Q 000407 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAS 1319 (1558)
Q Consensus 1276 ~g~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQsR~RvfIvaar 1319 (1558)
....+..+++.|....-.|......--.||-. .-|++|+.
T Consensus 228 ~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~----w~f~~aS~ 267 (336)
T PLN02823 228 HKEVFSSIYNTLRQVFKYVVPYTAHVPSFADT----WGWVMASD 267 (336)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEEeecCCCCCc----eEEEEEeC
Confidence 34567788888887665565555555556532 57888764
No 176
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=34.75 E-value=1.2e+02 Score=28.50 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=32.2
Q ss_pred eccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCC
Q 000407 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPES 1166 (1558)
Q Consensus 1124 lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~ 1166 (1558)
||+=||.|-.+..|.+.+... ++++|+++.+++.-+.+....
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~-v~~~D~~~~~~~~~~~~~~~~ 42 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGAS-VTGIDISEEMLEQARKRLKNE 42 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCE-EEEEES-HHHHHHHHHHTTTS
T ss_pred CEecCcCCHHHHHHHhccCCE-EEEEeCCHHHHHHHHhccccc
Confidence 688899999999999983333 479999999999888876543
No 177
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=34.74 E-value=23 Score=30.98 Aligned_cols=27 Identities=41% Similarity=0.807 Sum_probs=18.9
Q ss_pred EceeecCCCc----------cceeCCCCCCCCCcccccccccc
Q 000407 881 CKSLYWPERG----------AFFILPVDSMGLGVGSCHACGTK 913 (1558)
Q Consensus 881 c~~~Y~~~~~----------~F~~lp~~~~~~~~~~C~sC~~~ 913 (1558)
|.+.|+++.| .|.+|| ..+.|+.|...
T Consensus 7 CgyvYd~~~Gd~~~~i~pGt~F~~Lp------~~w~CP~C~a~ 43 (47)
T PF00301_consen 7 CGYVYDPEKGDPENGIPPGTPFEDLP------DDWVCPVCGAP 43 (47)
T ss_dssp TSBEEETTTBBGGGTB-TT--GGGS-------TT-B-TTTSSB
T ss_pred CCEEEcCCcCCcccCcCCCCCHHHCC------CCCcCcCCCCc
Confidence 6789999998 588887 45789999865
No 178
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=34.64 E-value=53 Score=38.25 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHPE 1165 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P~ 1165 (1558)
+..++||+.||.|-+++.+.++ | ..-++++|+++.-...=+.-..+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc
Confidence 5789999999999999999875 5 43357999999877765554433
No 179
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=34.28 E-value=55 Score=38.38 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
....+||+.+|.|.++.-|.+.| .. +.|+|+|+..++.++..+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~-v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KR-VIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SE-EEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc-Cc-ceeecCcHhHHHHHHHHhh
Confidence 56889999999999999999998 44 4799999999999998765
No 180
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=34.15 E-value=1.1e+02 Score=34.43 Aligned_cols=39 Identities=28% Similarity=0.185 Sum_probs=31.6
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEA 1158 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~t 1158 (1558)
..-++++=||.|..+.-|.+. |-..+..|.|+++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~ 83 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA 83 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH
Confidence 556899999999999988773 333456899999999986
No 181
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=33.83 E-value=56 Score=36.66 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=37.1
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
..++|||-||.|.++.-|.+.|......++|+++.+++..+.+.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence 478999999999999999887765445899999998887766654
No 182
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=33.69 E-value=58 Score=36.32 Aligned_cols=41 Identities=22% Similarity=0.062 Sum_probs=35.2
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..++||+=||.|-++.-|.+.|..+ .|+|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V--~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDV--RAWDHNPASIASVLDM 71 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeE--EEEECCHHHHHHHHHH
Confidence 4689999999999999998888764 7999999999876554
No 183
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=33.50 E-value=63 Score=39.47 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=35.5
Q ss_pred ceeEEEecCCCCCccc-cc----------cCCCC---------Ccch---hhhhHHHHHHHHHhhcCCcEEEEecccc
Q 000407 1216 QVDFINGGPPCQGFSG-MN----------RFNQS---------TWSK---VQCEMILAFLSFADYFQPRYFLLENVRN 1270 (1558)
Q Consensus 1216 ~VDlI~GGPPCQgFS~-an----------r~~~~---------~~~~---~r~~Lv~~fl~~id~~rPk~flLENV~g 1270 (1558)
+|=+|+||||-++|-+ ++ +..++ .... .|.+|+ ++-++.++|++||.||++-
T Consensus 43 ~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~li---l~t~~~fkPDi~IVd~~P~ 117 (400)
T COG4671 43 DILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLI---LSTAETFKPDIFIVDKFPF 117 (400)
T ss_pred eEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHHHHHHHHHHHH---HHHHHhcCCCEEEEecccc
Confidence 7889999999999997 33 11111 1111 134444 4567789999999999984
No 184
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=33.15 E-value=55 Score=36.60 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=32.3
Q ss_pred CceeeccccCchHHHHHHhhc--CCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A--G~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..++||+=||+|.++.-+.+. +.. +.++|.++.+++.-+.|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~--V~giD~s~~~l~~A~~~ 88 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELK--VTLVDSLGKKIAFLREV 88 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCe--EEEEeCcHHHHHHHHHH
Confidence 578999999999999877653 333 47999999888766655
No 185
>PRK11524 putative methyltransferase; Provisional
Probab=32.45 E-value=50 Score=39.21 Aligned_cols=41 Identities=22% Similarity=0.003 Sum_probs=34.7
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
.=.|||-|+|.|-.....++.|-+. .++|+++..++.-+..
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR~~--IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGRKF--IGIEINSEYIKMGLRR 249 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCCCE--EEEeCCHHHHHHHHHH
Confidence 3459999999999999999999886 5999999888865544
No 186
>COG5475 Uncharacterized small protein [Function unknown]
Probab=31.96 E-value=1.2e+02 Score=27.46 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=26.0
Q ss_pred CEEEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeecc
Q 000407 761 GEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGS 808 (1558)
Q Consensus 761 g~~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~ 808 (1558)
+.++++||.|.|+...|.. +..=+. ++ -|+.++||-+-.
T Consensus 2 ~~~FstgdvV~lKsGGP~M------tvs~~s-s~--Gmy~C~Wf~g~g 40 (60)
T COG5475 2 EMSFSTGDVVTLKSGGPRM------TVSGYS-SD--GMYECRWFDGYG 40 (60)
T ss_pred CceeecCcEEEeecCCceE------EEeccc-cC--CeEEEEEecCCC
Confidence 3578999999999877421 111111 23 499999998754
No 187
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=31.81 E-value=27 Score=43.25 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=43.0
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCC-------CchhcchhhHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPE-------SLMLINNCNVIL 1177 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~-------~~~~~~~~n~il 1177 (1558)
=.+-|+|||+|-+++-+..-|+. ++|+|.++.+++-++.|-+- ..+|+-|++..|
T Consensus 251 evv~D~FaGvGPfa~Pa~kK~cr--V~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAAKKGCR--VYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred chhhhhhcCcCccccchhhcCcE--EEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 45789999999999888888854 58999999999999999653 234555555555
No 188
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=31.61 E-value=7.3 Score=48.01 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred EeceEEeeCCEEEEccCCCCcccccccccccccccCCCcceEEEEEEEEccCCCcccccCceEEEEEEeeccccCCcccc
Q 000407 932 YGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAEKA 1011 (1558)
Q Consensus 932 ~~G~~Y~vGD~VYv~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVrwFyRPEDi~~~~~ 1011 (1558)
+.+..+++|+.+.+.+. |....|. ++++..+| +......+.-+.|||||+.+.+...
T Consensus 272 i~~~~~~~~~~~~~~~~----------------~~~~~p~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (371)
T COG5076 272 ITNSQAHVGAWPFLRPV----------------SDEEVPD-YYKDIRDP------MDLSTKELKLRNNYYRPEETFVRDA 328 (371)
T ss_pred ccccccccccccccccC----------------Ccccccc-hhhhhhcc------cccccchhhhhcccCCCcccccccc
Q ss_pred ccCCCceEEeecceeeeecceEeeeeEEeecCCC
Q 000407 1012 YCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDI 1045 (1558)
Q Consensus 1012 ~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~ 1045 (1558)
..+-.+++.+......+.+....|.|+|.+..++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 329 KLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRL 362 (371)
T ss_pred chhhhcccccchhhhhhhhhccchhhhHhhhhhh
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.56 E-value=51 Score=39.51 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=35.8
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+-||.|.++.-|.+.+.. ++|+|+|+.+++..+.|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~--V~avEiD~~li~~l~~~~ 78 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKK--VIAIEIDPRMVAELKKRF 78 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCc--EEEEECCHHHHHHHHHHH
Confidence 357999999999999998887755 479999999999887765
No 190
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=31.47 E-value=66 Score=38.78 Aligned_cols=108 Identities=30% Similarity=0.368 Sum_probs=66.1
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCCCCchhcchhhHHHHHHHhhcCCCccccchhhHHHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAEL 1199 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~e~~el 1199 (1558)
.--++|+=||.|-||.=..+||...+ +|+|-+.-|-.+-++--.+ .+.+.+-+| .|.|
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~v-YAvEAS~MAqyA~~Lv~~N--~~~~rItVI-------~GKi------------ 235 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKV-YAVEASEMAQYARKLVASN--NLADRITVI-------PGKI------------ 235 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceE-EEEehhHHHHHHHHHHhcC--CccceEEEc-------cCcc------------
Confidence 34589999999999999999999984 9999887776554332111 010000011 1333
Q ss_pred HhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCcEEEEeccccc
Q 000407 1200 AASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNF 1271 (1558)
Q Consensus 1200 ~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk~flLENV~g~ 1271 (1558)
..+-+|.++|+|+--| ||.. -....|+..++..-++++|.--++-.|-.+
T Consensus 236 ---------EdieLPEk~DviISEP-------MG~m------L~NERMLEsYl~Ark~l~P~GkMfPT~gdi 285 (517)
T KOG1500|consen 236 ---------EDIELPEKVDVIISEP-------MGYM------LVNERMLESYLHARKWLKPNGKMFPTVGDI 285 (517)
T ss_pred ---------ccccCchhccEEEecc-------chhh------hhhHHHHHHHHHHHhhcCCCCcccCcccce
Confidence 2233457899998654 3321 112247777777667888876665555443
No 191
>PRK13699 putative methylase; Provisional
Probab=30.79 E-value=66 Score=37.05 Aligned_cols=39 Identities=33% Similarity=0.255 Sum_probs=33.0
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHH
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKL 1161 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~ 1161 (1558)
=.+||-|+|.|....+..+.|-.. +++|+++...++-..
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r~~--~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGRRY--IGIELLEQYHRAGQQ 203 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCCCE--EEEecCHHHHHHHHH
Confidence 359999999999999999999886 599999977765433
No 192
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=29.03 E-value=85 Score=35.36 Aligned_cols=42 Identities=14% Similarity=0.002 Sum_probs=31.5
Q ss_pred eeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1122 ATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1122 ~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
++||+=||.|+++.-+.+..-...+.++|+++..++.-+.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~ 43 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI 43 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 589999999999888866431122469999998887766664
No 193
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=28.49 E-value=97 Score=35.93 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=33.6
Q ss_pred CCceeeccccCchHHHHHHhhc--CCcEeEEEEcCCHhHHHHHHHh
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQS--GISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~A--G~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..-++||+=||.|.++.-|.+. |.. +.++|+++.+++.-+.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~--v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAV--IEALDSSPEMVAAARER 72 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCE--EEEEECCHHHHHHHHhc
Confidence 3468999999999999988776 444 47999999988866553
No 194
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=27.74 E-value=83 Score=35.38 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=32.3
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+.||.|.++.-|.+. +-...++++|+++.+++.-+.|+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 357999999999999777653 21112589999999887666654
No 195
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=27.04 E-value=97 Score=30.35 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHHh----------HhHHHHHhhccCCCCCCCCCHHHHHHHHh
Q 000407 197 ASSYKKYYELFFEKAR----------ACIEVYKKLSKTSGGNSDCSIDELLAGVV 241 (1558)
Q Consensus 197 ~~~y~~~~~~~~ek~~----------~~~~v~~~l~~~~~~~~~~~~e~ll~~v~ 241 (1558)
|+.|..+-+++.++.. +|.++++. +|..++||+||++.|.
T Consensus 13 sGe~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~-----~g~~~~~~~~l~~~i~ 62 (86)
T PF10163_consen 13 SGEYERLKELLRQRLIECGWRDEVRQLCREIIRE-----RGIDNLTFEDLLEEIT 62 (86)
T ss_dssp CTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----H-TTTSBHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCChHHHHHHHHHHHHHh-----hCCCCCCHHHHHHHHH
Confidence 5788889999988887 66666665 6678999999999985
No 196
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=27.01 E-value=91 Score=34.67 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=37.7
Q ss_pred CCceeeccccCchHHHHHHhhcCCc-EeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGIS-STKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~-~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
...++||+.||.|.++.-+.+.+.. ....++|+++.++..-+.|.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 4679999999999999998877653 225799999999988877764
No 197
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=26.42 E-value=78 Score=39.21 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=27.1
Q ss_pred hhcCCCCC-CceeEEEecCCCCCccccccCCCCCcchhhhhHHHHHHHHHhhcCCc
Q 000407 1207 VINNLPLP-GQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPR 1261 (1558)
Q Consensus 1207 ~~~~lP~p-G~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~Lv~~fl~~id~~rPk 1261 (1558)
+...++.+ +.+|+++.-||=- -+-.. ...-..|+..|.+.++..-+.
T Consensus 289 d~~~l~~~~~~~gvvI~NPPYG------eRlg~--~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 289 DATDLKEPLEEYGVVISNPPYG------ERLGS--EALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred chhhCCCCCCcCCEEEeCCCcc------hhcCC--hhhHHHHHHHHHHHHHHHhcC
Confidence 34455555 7899999999932 11111 122345777777777554443
No 198
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=26.00 E-value=90 Score=35.38 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=33.8
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-++||+.||.|.++.-|.+. |-...++++|+++..++.-+.|.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 468999999999999877653 43223589999999988777664
No 199
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=25.90 E-value=63 Score=39.46 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.5
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEA 1158 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~t 1158 (1558)
+..+||||.||=||--.=+..+++.. .+++|++..+++-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~-~vg~Dis~~si~e 100 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKH-YVGIDISEESIEE 100 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SE-EEEEES-HHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCE-EEEEeCCHHHHHH
Confidence 68999999999999888899999997 4899999887764
No 200
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=25.65 E-value=60 Score=38.25 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=36.7
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
..++||+=||.|-||+=|-+.|..+ .+||..+.++++++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V--~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQV--TGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCCee--EeecccHHHHHHHHHh
Confidence 3569999999999999999999875 5999999999998776
No 201
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=25.28 E-value=1.1e+02 Score=38.81 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=32.3
Q ss_pred CCceeeccccCchHHHHHHhhcC----CcEeEEEEcCCHhHHHHHH
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSG----ISSTKWAIEYEEPAGEAFK 1160 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG----~~~~~~AvE~d~~A~~ty~ 1160 (1558)
+...++|+=||-|-|+.-.-+|| ...-++|||.++.|..+.+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 46789999999999998776766 2233699999999998874
No 202
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=25.09 E-value=1e+02 Score=34.71 Aligned_cols=43 Identities=35% Similarity=0.298 Sum_probs=35.4
Q ss_pred CCceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
...++||+.||.|.+..-+.+.|.. ..++|.++.+++..+.|.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~--v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN--VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe--EEEEeCCHHHHHHHHHHH
Confidence 3678999999999999988888876 368999998887766653
No 203
>PRK00811 spermidine synthase; Provisional
Probab=25.00 E-value=87 Score=37.26 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=83.9
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCCCCchh-cchhhHHHHHHHhhcCCCccccchhhHH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHPESLML-INNCNVILRAVMEKCGDAEDCVSTSEAA 1197 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P~~~~~-~~~~n~il~~~~~~~GDi~d~i~~~e~~ 1197 (1558)
+-++|+|-+|.|++..-+.+. ++.. +.++|+|+..++.-+.+++....- .++-++ .-..||. .
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv-----~v~~~Da---------~ 141 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRV-----ELVIGDG---------I 141 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCce-----EEEECch---------H
Confidence 457999999999998877664 6665 368999999999888877532110 000000 0001221 1
Q ss_pred HHHhhcchhhhcCCCCCCceeEEEecCCCCCccccccCCCCCcchhhhhH-HHHHHH-HHhhcCCcEEEEeccccccccc
Q 000407 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEM-ILAFLS-FADYFQPRYFLLENVRNFVSFN 1275 (1558)
Q Consensus 1198 el~~~l~~~~~~~lP~pG~VDlI~GGPPCQgFS~anr~~~~~~~~~r~~L-v~~fl~-~id~~rPk~flLENV~g~ls~~ 1275 (1558)
.. + .. ..+..|+|+.-.+ .+++... .| -.+|++ +-+.++|.-+++=|+.....
T Consensus 142 ~~---l-----~~--~~~~yDvIi~D~~-dp~~~~~------------~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~-- 196 (283)
T PRK00811 142 KF---V-----AE--TENSFDVIIVDST-DPVGPAE------------GLFTKEFYENCKRALKEDGIFVAQSGSPFY-- 196 (283)
T ss_pred HH---H-----hh--CCCcccEEEECCC-CCCCchh------------hhhHHHHHHHHHHhcCCCcEEEEeCCCccc--
Confidence 11 1 11 1347899987542 2222111 11 123443 33567898777766654322
Q ss_pred cchhHHHHHHHHhcCCcEEEEEEEecCCCCCCCC--ccEEEEEeec
Q 000407 1276 KGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQS--RKRAFIWAAS 1319 (1558)
Q Consensus 1276 ~g~~f~~il~~L~~~GYqv~~~vLnA~~yGVPQs--R~RvfIvaar 1319 (1558)
....+..+++.|.+..-.|...... +|.- -.-.|++|+.
T Consensus 197 ~~~~~~~i~~tl~~~F~~v~~~~~~-----vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 197 QADEIKDMHRKLKEVFPIVRPYQAA-----IPTYPSGLWSFTFASK 237 (283)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEeE-----CCcccCchheeEEeec
Confidence 2456778888887765444432222 2332 2345777754
No 204
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=24.54 E-value=1e+02 Score=34.75 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=36.6
Q ss_pred CCceeeccccCchHHHHHHhhcCC--cEeEEEEcCCHhHHHHHHHhCC
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGI--SSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGlslGLe~AG~--~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
...++||+-||.|.++.-+.+.+- .. ..++|+++.+++.-+.|+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhc
Confidence 357899999999999998887762 33 4799999999887777754
No 205
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=23.74 E-value=6.4e+02 Score=29.75 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=38.4
Q ss_pred EEEEcCE--EEecCCeEEEecCCCCCCCeEEEEEEEeeeCCCceEEEEEEEeeccccccCcCCCCCceEeeccccccccc
Q 000407 756 KAIVHGE--VVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQ 833 (1558)
Q Consensus 756 ~a~v~g~--~~~vGD~V~V~~~~~~~~p~I~~Ie~m~e~~~g~kmfh~~WF~rg~eTvLg~tad~rELFlsd~cdd~~l~ 833 (1558)
.+.++|+ .+..||++++.++.+ .-|.+ .+..-.+.-|+.+.-+.+-|.. .-.+|..+. +|++..
T Consensus 92 ~v~~~g~~~~L~~Gd~~y~pa~~~----------H~~~N-~~~~~a~~l~v~k~y~~~~g~~--~~~~vvg~~-~dv~~~ 157 (260)
T TIGR03214 92 NVTAEGETHELREGGYAYLPPGSK----------WTLAN-AQAEDARFFLYKKRYQPVEGLH--APELVVGNE-KDIEPE 157 (260)
T ss_pred EEEECCEEEEECCCCEEEECCCCC----------EEEEE-CCCCCEEEEEEEeeeEEcCCCC--CCCeeecCH-HHCCcc
Confidence 3456776 577899999988652 12222 2334466677777777665521 223344444 455544
Q ss_pred cccee
Q 000407 834 DIKQT 838 (1558)
Q Consensus 834 ~I~~K 838 (1558)
..-++
T Consensus 158 ~~~g~ 162 (260)
T TIGR03214 158 PYEGM 162 (260)
T ss_pred ccCCC
Confidence 44443
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.81 E-value=1.5e+02 Score=35.04 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=38.3
Q ss_pred CceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
.=++|++=+|.|+|+.-|-+.|..+ .|+|+|+.-+..++..+.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v--~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARV--TAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeE--EEEEeCHHHHHHHHHhcc
Confidence 5679999999999999999998875 599999999999887763
No 207
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=22.24 E-value=1.1e+02 Score=33.77 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=31.2
Q ss_pred ceeeccccCchHHHHHHhhcCCcEeEEEEcCCHhHHHHHHHh
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLN 1162 (1558)
Q Consensus 1121 L~~lDLFAG~GGlslGLe~AG~~~~~~AvE~d~~A~~ty~~N 1162 (1558)
-++||+-||.|.+..-|.+.+... .+++|+++.+++..+.+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~-~~giD~s~~~i~~a~~~ 55 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVR-GYGIEIDQDGVLACVAR 55 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCc-EEEEeCCHHHHHHHHHc
Confidence 479999999999998886543222 47999999888765543
No 208
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=22.12 E-value=74 Score=36.05 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=26.2
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCH
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEE 1153 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~ 1153 (1558)
.-++|||-||.|+++.-+.+. |-...+.|+|+++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 347999999999999877553 4333458999988
No 209
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=20.72 E-value=1.1e+02 Score=35.25 Aligned_cols=45 Identities=18% Similarity=-0.142 Sum_probs=32.3
Q ss_pred CceeeccccCchHHHHHHhhc-CCcEeEEEEcCCHhHHHHHHHhCC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQS-GISSTKWAIEYEEPAGEAFKLNHP 1164 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~A-G~~~~~~AvE~d~~A~~ty~~N~P 1164 (1558)
.-++||+.+|+|..++.+..+ +-...+.++|+++.+++.-+.|+.
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~ 114 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK 114 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 457999999999866655442 111124799999999998887763
No 210
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.66 E-value=1.3e+02 Score=36.26 Aligned_cols=44 Identities=23% Similarity=0.036 Sum_probs=35.4
Q ss_pred CceeeccccCchHHHHHHhhcCC-cEeEEEEcCCHhHHHHHHHhC
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGI-SSTKWAIEYEEPAGEAFKLNH 1163 (1558)
Q Consensus 1120 kL~~lDLFAG~GGlslGLe~AG~-~~~~~AvE~d~~A~~ty~~N~ 1163 (1558)
.-.+||.-+|.||.+..+-+..- ...++|+|.|+.|++.-+.+.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 34799999999999999987642 223589999999999877654
Done!