Query 000407
Match_columns 1558
No_of_seqs 417 out of 2081
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 15:57:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000407.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_187-191//hhsearch_pdb/000407hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 1975.2 78.6 1076 400-1555 97-1311(1330)
2 3swr_A DNA (cytosine-5)-methyl 1.0 1 1 1489.0 66.9 864 650-1555 7-1001(1002)
3 4ft4_B DNA (cytosine-5)-methyl 1.0 1 1 848.9 45.6 583 929-1555 50-744 (784)
4 3av4_A DNA (cytosine-5)-methyl 1.0 1 1 651.8 28.3 280 9-296 15-302 (1330)
5 3g7u_A Cytosine-specific methy 1.0 1 1 589.8 28.2 347 1119-1555 1-370 (376)
6 3epz_A DNA (cytosine-5)-methyl 1.0 1 1 573.3 12.4 239 54-298 10-256 (268)
7 3ubt_Y Modification methylase 1.0 1 1 515.9 24.5 326 1121-1555 1-327 (331)
8 2c7p_A Modification methylase 1.0 1 1 497.2 25.5 313 1118-1555 9-325 (327)
9 4dkj_A Cytosine-specific methy 1.0 1 1 452.8 12.4 335 1117-1557 7-397 (403)
10 1g55_A DNA cytosine methyltran 1.0 1 1 450.9 20.7 332 1120-1549 2-342 (343)
No 1
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=1975.24 Aligned_cols=1076 Identities=33% Similarity=0.618 Sum_probs=892.9
Q ss_pred HHCC-EEEECCCCCC-CCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCC-CCCCEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 0010-1300389998-9989987311342397779997121011369888-87743699999864069998545799866
Q 000407 400 EFDE-LLAYDSDYDS-CDIDQLPRRMLHDWSLYNSDSRLISLELLPMKPC-EDIDVTIFGSGKMISDEGSGFCLDTDSSQ 476 (1558)
Q Consensus 400 E~~e-~~l~~~~~~~-~~~~~~P~r~Lt~f~iyd~~~~l~~le~l~~~~~-~~~dv~lf~SG~v~~~~~~~~~~d~~~~~ 476 (1558)
-||+ |+||++++++ +++|++|||+||+|+|||++||||||+ +| ||+||+||+||+|+|| +||||+
T Consensus 97 l~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~-----~g~~e~~~~~~~sg~~k~~------~~~~~~- 164 (1330)
T 3av4_A 97 LTSEKLSIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCPVD-----TGLIEKNVELYFSGCAKAI------HDENPS- 164 (1330)
T ss_dssp HSCTTCC-----------CCSSCEEEEEEEEEECTTCBBCCST-----TSTTTTTCCCEEEEEECCT------TCCCCS-
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC-----CCCCCCCEEEEEEEEEEEC------CCCCCC-
T ss_conf 4586124430675542223557532202578875899734664-----6664676499986212000------158998-
Q ss_pred CCCCCCCCCCCCCEEE-EECCCCEEEEE-E-CCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6889889888897014-52274169999-5-8931379998154028838997320344797999999999999999715
Q 000407 477 CTSGVSGAQDAGGFPI-YLSSIKEWMIE-F-GSSMIFISIRTDLAWYRLGKPSKQYAPWYEPVLKTARVAISIITMLKEQ 553 (1558)
Q Consensus 477 ~~~~~~~~~~~~gi~~-~lg~I~eW~I~-~-g~~~~~I~i~T~~A~Y~L~~Ps~~Y~~~~~~~~~k~~~~~~vi~~L~~~ 553 (1558)
.++|||+ +||||+||||+ | ||+|++|+|+|+||||+||+||++|||||++|+||||||++||+||+++
T Consensus 165 ---------~~~g~~~~~l~~i~ew~i~~f~g~~~~~i~~~t~~a~y~l~~ps~~yap~~~~~~~~~~~~~~vi~~l~~~ 235 (1330)
T 3av4_A 165 ---------MEGGINGKNLGPINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNN 235 (1330)
T ss_dssp ---------STTCEEEEEESCCCEEEEECSSSSSCCEEEEECSSCEEEECSBCTTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---------CCCCCCHHHCCCHHHHEEEEECCCCEEEEEEECCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---------77895120045215333520257514899985021113436835877789999999999999999998617
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH--HCCCHHHHHHHHHHHHCCC-CCE
Q ss_conf 8989989899999973201499864458834554641111362677761297001--2010288999984210023-323
Q 000407 554 TRVSRLSFTDVIKRLSEIKKDQHSYISSDPAAVERYVVVHGQIVLQLFAEYPDEQ--IKKCAFIIGLMKKMEERHH-TKW 630 (1558)
Q Consensus 554 ~~~~~~s~~dll~~v~~~~~~~~~~i~s~~~~~e~~lv~hgqfi~~q~~~~d~~~--~~~~p~~~~L~~~~~~~~~-~~~ 630 (1558)
|++|||||||||++++ ++++||++ ++||||||+|||||||||++||++. +.+++|+++ ||++.-+ -++
T Consensus 236 ---~~~~~~d~~~~~~~~~--~~~~~~~~-~~~e~~l~~h~q~i~~q~~~~~~~~~~~~~~~~~~~---~m~~~~~~~~~ 306 (1330)
T 3av4_A 236 ---PDAVYEDLINKIETTV--PPSTINVN-RFTEDSLLRHAQFVVSQVESYDEAKDDDETPIFLSP---CMRALIHLAGV 306 (1330)
T ss_dssp ---TTCCHHHHHHHHHHCC--CCTTSSCS-CCCHHHHHHTHHHHHHHHHHHHHHSCCSSCCGGGSH---HHHHHHHHTTC
T ss_pred ---CCCCHHHHHHHHHCCC--CCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHHHHHHHHCC
T ss_conf ---8788999998874468--86334420-456888765455477678637754454324641437---89999997225
Q ss_pred EEECCCEECCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCC---CCCC-------HHHH------
Q ss_conf 540221000234579876789612033-4543035779999999974206899898---7411-------0000------
Q 000407 631 LVKKKKVQKSEINLNPRASMGPVVVSK-RKVMQATTTRLINRIWGEYYSNYSPEDG---KEET-------ACEA------ 693 (1558)
Q Consensus 631 ~~~k~~~~r~~~~~~~~~~~~~~~~~k-~~~~~ATTT~LV~~i~~~~f~~~~~~~~---~~~~-------~~~~------ 693 (1558)
+||||+++|+ .|+|++ +| +++||||||+|||+||++||++|+++++ +++. .|+.
T Consensus 307 ~l~~r~~~r~--------~~~~~~-~~~~~~~~attt~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~cg~c~~c~~~~c 377 (1330)
T 3av4_A 307 SLGQRRATRR--------VMGATK-EKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAMKRRRCGVCEVCQQPEC 377 (1330)
T ss_dssp CTTCCCCCC--------------------CCCCCCCCHHHHHHHHHHHTTSCCC-----------CCCCSSSTTTTCC--
T ss_pred CCCHHHHHHH--------HCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4471787665--------306410-0034655010148899999987445475544333333110445664656667455
Q ss_pred ------------------------CC--CHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCCC
Q ss_conf ------------------------12--2134410789754147877210000023201121024488773487064200
Q 000407 694 ------------------------NE--DEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVR 747 (1558)
Q Consensus 694 ------------------------ke--~~e~~e~ee~e~~e~ee~~~~~~~~~~~~~~~~k~k~~~~~~~i~W~Gep~~ 747 (1558)
|+ +.++++.+|+|++++++. ++ +++....+++|+++++++|+|+|+|++
T Consensus 378 g~c~~c~~~~k~gg~~~~kq~c~~r~c~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~i~W~G~p~k 452 (1330)
T 3av4_A 378 GKCKACKDMVKFGGTGRSKQACLKRRCPNLAVKEADDDEEADDDVS--EM---PSPKKLHQGKKKKQNKDRISWLGQPMK 452 (1330)
T ss_dssp --------------------CCCCCCCHHHHHHHHHHTTCCCC-----CC---CCCCCTTCSCBCCCCCSCEEEESSCSC
T ss_pred CCCHHHHCCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCHH--HC---CCCCCHHHHHHHHCCCCCCEECCCCEE
T ss_conf 7414432343238864101056765240222230013433310001--10---366413443421034677357068663
Q ss_pred C-CCCCEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECC
Q ss_conf 3-554235789995999951976999428999999089999985408984499999975156333476789872485134
Q 000407 748 K-SGLALYKKAIVHGEVVSLGSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQ 826 (1558)
Q Consensus 748 ~-~~~~~Y~~a~v~g~~~~vGD~V~V~~~d~~~~p~I~~Ie~l~e~~~g~kmfh~~WF~rg~eTvLg~tad~rELFlsd~ 826 (1558)
. +++.||+++.++|.+|+|||||||.++++++++||++|++||++++|.+||||+|||||+||+||++++++|||||++
T Consensus 453 ~~~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~~~~rElFlS~~ 532 (1330)
T 3av4_A 453 IEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLELFLVGE 532 (1330)
T ss_dssp CC--CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGGSCTTEEEEEEE
T ss_pred CCCCCEEEEEEEECCEEEECCCEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECHHHCCCCCCCCCCEEEEECC
T ss_conf 46872564589999999965998999579999887888883621159997799999987667702553458874787555
Q ss_pred CCCCCCCCCCEEEEEEEECCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECEEECCCCCCCEECCCCC--CCC
Q ss_conf 454321242216799985389--8755331221113556887998640699961599203338886311077887--898
Q 000407 827 CRDLELQDIKQTVVVDIRSVP--WGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDS--MGL 902 (1558)
Q Consensus 827 cdd~~l~~I~~Kv~V~~~~~~--w~~~~r~~~~~~d~~~~~~~e~r~~~~~~~~y~c~~~Y~~~~~~F~~lp~~~--~~~ 902 (1558)
|++++|++|.+||.|++++++ |+. ++|++.+..+ +++ ..+++|||+++|++++++|++||.+. +++
T Consensus 533 ~d~~~l~~I~gKC~V~~~~~~~~~~~---~~~~~~~~~~-~~~------~~~~~F~C~~~Yd~~~~~F~~lp~~~~~~~~ 602 (1330)
T 3av4_A 533 CENMQLSYIHSKVKVIYKAPSENWAM---EGGTDPETTL-PGA------EDGKTYFFQLWYNQEYARFESPPKTQPTEDN 602 (1330)
T ss_dssp EEEEEGGGEEEEECEEECCCCTTSTT---CCC--------------------CCEEEEEEEETTTTEEECCCCCCCCGGG
T ss_pred CCCCCHHHHCCEEEEEEECCCHHHHH---HCCCCCCCCC-CCC------CCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 05674888243559998156122344---1466731011-222------5688369986987755735786767766565
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCC----------CCEEEECEEEEECCEEEECCCCCCCCC------------------
Q ss_conf 9643346566552222021000366----------623781248952888998159888654------------------
Q 000407 903 GVGSCHACGTKESEKEKETFKVHSK----------TSFVYGTAEYFVHDYVYISPHHFTWDK------------------ 954 (1558)
Q Consensus 903 ~~~~C~sC~~~e~~~~ke~~kv~~~----------~~f~~~G~~Y~vGD~VYi~p~~~~~~~------------------ 954 (1558)
++++|++|.+++.++++++++|.+. .+|+++|++|++||||||.|+.|+|+.
T Consensus 603 ~~~~C~sC~~~e~~~~ke~~~v~~~~~~~~~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ 682 (1330)
T 3av4_A 603 KHKFCLSCIRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETL 682 (1330)
T ss_dssp SSSCCHHHHHHHHHHHHHSCEEEEEEEESSSSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTT
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76646255555666502445223444355672566679989989952888997761134332334432333323344322
Q ss_pred -----CCCCCCCCCCCCC-CCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCC--CCCCCCCCEEEEECCEE
Q ss_conf -----3444201365568-876338899899715898666567249999974163258943--21457986179526614
Q 000407 955 -----AEGETFKAGRNVG-LKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISAE--KAYCSDIREVYYSEETH 1026 (1558)
Q Consensus 955 -----~~~~~~~~g~N~~-~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVr~fyRPeDi~~~--~~~~~D~rELf~Sde~~ 1026 (1558)
.+.++|.+|+|++ ++||+||||.+||..+.+++.+.+.++|+|+|||||+||++. .++++|.||||||++++
T Consensus 683 ype~yrk~~~~~kg~~~~~~~Py~IgqI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~ 762 (1330)
T 3av4_A 683 YPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEA 762 (1330)
T ss_dssp CSSGGGGGC-------CCCCCCCEEEEEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEE
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECHHHCCCCCCCCCCCCCCEEEEECCCE
T ss_conf 30222011000256556788872578999997057766567884389999864744424543224456754688434413
Q ss_pred EEECCEEEEEEEEEECCCCCCCC-CCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 43153185331895138989898-8854-587389998551899965447722101356898741433203787323475
Q 000407 1027 LIFVEAIAGKCEVRKKNDIPACN-APAI-FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGE 1104 (1558)
Q Consensus 1027 ~vpv~~I~GKC~V~~~~d~~~~~-~~~~-~dd~Fyce~~YD~~~~~l~~lP~~~kl~~~~~~~~~~~~~~~~~g~~~~~~ 1104 (1558)
++|+++|+|||+|+++++++.+. +|.. .+|+|||++.||+.+++|+++|.++++...+++ ++++|+++...
T Consensus 763 ~vp~~~I~GKC~V~~~~d~~~~i~~y~~~g~d~Fy~~~~Yd~~~k~~~~~P~~~~~~~~~~~-------~k~~g~~~~~~ 835 (1330)
T 3av4_A 763 VVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSPGNKGK-------GKGKGKGKGKH 835 (1330)
T ss_dssp EEEGGGCCEEEEEEESTTCSSCHHHHHHTSTTEEEESCEEETTTTEEECCCGGGCC------------------------
T ss_pred ECCHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCHHHHCCCCCCC-------CCCCCCCCCCC
T ss_conf 23777848558998536666555432237897179988862667811369567620444102-------24566443445
Q ss_pred CHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHC
Q ss_conf 03566311788546874065123482389999850699576999827876999999819998211011367999989641
Q 000407 1105 DELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKC 1184 (1558)
Q Consensus 1105 ~~~~~~~~~~~~~~~kL~~lDLFAG~GGls~GLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~ 1184 (1558)
...+...........+++++||||||||+++||++||+..++||+|+|+.|++||++|||++.++..|++.++..++.
T Consensus 836 ~~~~~~~~~~~~~~~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~-- 913 (1330)
T 3av4_A 836 QVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMA-- 913 (1330)
T ss_dssp ------------CCCCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTTSEEECSCHHHHHHHHTT--
T ss_pred CCCCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEECCHHHHHHHHHC--
T ss_conf 321222210231358756872036832999999977998469999788999999998589970760507777676412--
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99861134026899984113211127999996007982278987554556799875334565899999987441994999
Q 000407 1185 GDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFL 1264 (1558)
Q Consensus 1185 GDi~d~i~~~~~~el~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~rPk~fi 1264 (1558)
||+.+. ....+|.++++|+|+||||||+||.+|+++....++.++.|++.|+++|+.++|++||
T Consensus 914 gdi~~~----------------~~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk~fv 977 (1330)
T 3av4_A 914 GEVTNS----------------LGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFL 977 (1330)
T ss_dssp TCSBCS----------------SCCBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCSEEE
T ss_pred CCHHHH----------------HHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 302220----------------0333255676016996288754332354456654321667999999999984683899
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHH--HHH
Q ss_conf 703566423566446999999884089189999985378898877648999960699999999987655640124--441
Q 000407 1265 LENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPEL--KIM 1342 (1558)
Q Consensus 1265 LENV~glls~~~g~~f~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~lP~~P~PtH~f~~~~l--~~~ 1342 (1558)
||||+||++++++.+|..++..|..+||++.+.+|||++|||||+|+|+||||++.+..+|.||.|+|.+..... ...
T Consensus 978 ~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~~~~~~~fP~pth~~~~~~~~l~~~ 1057 (1330)
T 3av4_A 978 LENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVV 1057 (1330)
T ss_dssp EEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEECTTSCCCCCCCCCBCCCGGGCCCCEE
T ss_pred EECCHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93417876027548999999999865982358996089969983245799999618986667997545454321100013
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--CCCCHHHHHHCHHHHHH
Q ss_conf 1454321001235899998655487671399989999986432347897156899671174--32110134211087788
Q 000407 1343 LSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM--AVLTDHISKEMNELNLI 1420 (1558)
Q Consensus 1343 l~~~~~~~~~~~~~~~~p~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~--~~l~dhi~k~~~~l~l~ 1420 (1558)
+. +..|.....+....|++.+||+|||+|||.+.++.....+.|...+.+||++.+|+.. ..+.+|+++.++++...
T Consensus 1058 ~~-~~~~~~~i~~~~~~p~~~vTV~DAI~DLP~i~~g~~~~~~~y~~~p~s~~q~~iR~~~~~~~l~~H~~~~~s~~~~~ 1136 (1330)
T 3av4_A 1058 VD-DKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAA 1136 (1330)
T ss_dssp ET-TEEECCSCCCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEEECCSCCCSHHHHHHHCSSCCCEEECCCCCCCCHHHHH
T ss_pred CC-CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 46-53111233322347767783999863175545677643335577763188887541334554456543444788999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCC----------------------------------------CCCCCCCCCCCCC
Q ss_conf 740477999999888972110235684----------------------------------------2235566787753
Q 000407 1421 RCQKIPKRPGADWHDLPDEKVKLSTGQ----------------------------------------VVDLIPWCLPNTA 1460 (1558)
Q Consensus 1421 R~~~Ip~~~G~dwr~lp~~~v~~~~G~----------------------------------------~~~l~p~~lp~~~ 1460 (1558)
|+.+||.++|++|+++|...+.+..|. ..+|+||++++++
T Consensus 1137 Ri~~ip~~~G~~~~dlp~~~~~l~~g~~~~~l~y~~~~~k~g~~~~~~lrg~~~~~~Gk~~~p~~r~~~tL~p~~~~~~g 1216 (1330)
T 3av4_A 1137 RMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1216 (1330)
T ss_dssp HHHHSCSSTTCCGGGCCCCCEECSSSCEEBCCCCCBCCTTTCCCTTSCCCBSSGGGGTSCCCSSSCCCSBSSCTHHHHHG
T ss_pred HHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99746678998723351343211234432100013321125644321000000001245556311112222310011235
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCHHH
Q ss_conf 34776556411026889987312578988886520169997446698887418999983625897889876245753899
Q 000407 1461 KRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTL 1540 (1558)
Q Consensus 1461 ~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTvRE~ARlQGFPD~y~f~G~~~~~ykQIGNAVPppl 1540 (1558)
+++++|.+.|+||.|+++++|++|.+.++++.|+++||.|+|.||||||||||||||+|+|.|+.+++||||||||||+|
T Consensus 1217 ~~~~~~~~~ygRL~~d~p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~Gs~t~~yrQIGNAVPPlL 1296 (1330)
T 3av4_A 1217 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPL 1296 (1330)
T ss_dssp GGTGGGTTTTCBCCTTSCBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHH
T ss_pred CCCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHEEEEECCCHHH
T ss_conf 54444455400046678988457577555778731285336468799999966999996979887566378674859899
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999933
Q 000407 1541 AFALGRKLKEAVESK 1555 (1558)
Q Consensus 1541 a~AIg~~I~~aL~~~ 1555 (1558)
|+|||++|+++|...
T Consensus 1297 AkAIA~~I~~~L~~~ 1311 (1330)
T 3av4_A 1297 AKAIGLEIKLCLLSS 1311 (1330)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999998765
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=1.00 E-value=1 Score=1489.05 Aligned_cols=864 Identities=37% Similarity=0.700 Sum_probs=733.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC---CC-------------------------------------
Q ss_conf 89612033454303577999999997420689989874---11-------------------------------------
Q 000407 650 MGPVVVSKRKVMQATTTRLINRIWGEYYSNYSPEDGKE---ET------------------------------------- 689 (1558)
Q Consensus 650 ~~~~~~~k~~~~~ATTT~LV~~i~~~~f~~~~~~~~~~---~~------------------------------------- 689 (1558)
++|.+.+++.|++||||+||+.+|++||++|++.++++ +.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rc~~c~~c~~~~cg~c~~c~~~~k~gg~~~~~q 86 (1002)
T 3swr_A 7 RHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQ 86 (1002)
T ss_dssp SSCCCC----CCSCCCCHHHHHHHHTSSCSCC---------CCCCCBCCTTSTTTSSCCCSCSTTGGGSSTTSSCTTCCC
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 27323422587525666423233443157766300122101452244677772706887889854356875689862017
Q ss_pred HHHHCC--CHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCCEEEEEEECCEEEEC
Q ss_conf 000012--21344107897541478772100000232011210244887734870642003-554235789995999951
Q 000407 690 ACEANE--DEEVEEQGENEEDDTEEEKLISEERQISCSVAVQIKSRSTKKEITWEGECVRK-SGLALYKKAIVHGEVVSL 766 (1558)
Q Consensus 690 ~~~~ke--~~e~~e~ee~e~~e~ee~~~~~~~~~~~~~~~~k~k~~~~~~~i~W~Gep~~~-~~~~~Y~~a~v~g~~~~v 766 (1558)
.|..|+ +...+++||+|++|+|. +.++. +.....++++++++++++|+|+|++. +++.||+++.++|++|+|
T Consensus 87 ~c~~r~c~~~~~~e~~d~~~~eee~--~~~~~---~~~~~~~~~k~~~~~~~~W~G~p~k~~~~~~~Y~s~~v~g~~i~V 161 (1002)
T 3swr_A 87 ACQERRCPNMAMKEADDDEEVDDNI--PEMPS---PKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEV 161 (1002)
T ss_dssp CCGGGCCTTCBCCCSCCCTTCTTSS--CCCCC---CCCTTCSCBCCCCCSCEEEESCCCCCBTTEEECSEEEETTEEEET
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCC--CCCCC---CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEC
T ss_conf 7775027651237632255421000--02345---022220123224455654367633466674310389999989964
Q ss_pred CCEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECC
Q ss_conf 97699942899999908999998540898449999997515633347678987248513445432124221679998538
Q 000407 767 GSAVLVEVDELDQLPVIYFVEYMFEATGGCKLFHGIIMQRGSHTVLGNTANEREVFLANQCRDLELQDIKQTVVVDIRSV 846 (1558)
Q Consensus 767 GD~V~V~~~d~~~~p~I~~Ie~l~e~~~g~kmfh~~WF~rg~eTvLg~tad~rELFlsd~cdd~~l~~I~~Kv~V~~~~~ 846 (1558)
||||+|.+++++.+|||++|++|||+++|++||||||||||+||+||++++++||||||+|+++++++|.+||+|+++++
T Consensus 162 GD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~ 241 (1002)
T 3swr_A 162 GDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAP 241 (1002)
T ss_dssp TCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGGSCTTEEEEEEEEEEEEGGGEEEEECEEECCC
T ss_pred CCEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCHHCCCCCCCCCCCEEEECCCCCCCHHHHCEEEEEEECCC
T ss_conf 99899966888888668999877644899769999998661010146678998468646545775889350659997567
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECEEECCCCCCCEECCCCCCCC--CCCCCCCCCCCCCCCCCCCE
Q ss_conf --98755331221113556887998640699961599203338886311077887898--96433465665522220210
Q 000407 847 --PWGHQHRKDIANADKVDRARAEERKKKGLPTEYYCKSLYWPERGAFFILPVDSMGL--GVGSCHACGTKESEKEKETF 922 (1558)
Q Consensus 847 --~w~~~~r~~~~~~d~~~~~~~e~r~~~~~~~~y~c~~~Y~~~~~~F~~lp~~~~~~--~~~~C~sC~~~e~~~~ke~~ 922 (1558)
+|++++ |.+.+. +...+.+.+|||+++|++++++|++||.+.+.. ++++|++|.+.+++++++++
T Consensus 242 ~~~w~~~~---~~~~~~--------~~~~~~~~~ffc~~~Y~~~~~~F~~lp~~~~~~~~~~~~c~~c~~~e~~~~~~~~ 310 (1002)
T 3swr_A 242 SENWAMEG---GMDPES--------LLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLAEMRQKEIP 310 (1002)
T ss_dssp CTTGGGCT---TCCCCC--------SCCCCCCTSEEEEEEEETTTTEEECCCCCCCCTTCTTTCCHHHHHHHHHHHHTSC
T ss_pred CCCHHHHC---CCCCCC--------CCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 75434422---666444--------4556789869999898888772248870121434688768522112456630457
Q ss_pred EECC----------CCCEEEECEEEEECCEEEECCCCCCCCC-----------------------CCCCCCCCCCCC-CC
Q ss_conf 0036----------6623781248952888998159888654-----------------------344420136556-88
Q 000407 923 KVHS----------KTSFVYGTAEYFVHDYVYISPHHFTWDK-----------------------AEGETFKAGRNV-GL 968 (1558)
Q Consensus 923 kv~~----------~~~f~~~G~~Y~vGD~VYi~p~~~~~~~-----------------------~~~~~~~~g~N~-~~ 968 (1558)
++.+ ..+|+++|++|++||||||.|+.|+|+. .+.+.|.+|||+ ++
T Consensus 311 ~~~~~l~~~~~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~ 390 (1002)
T 3swr_A 311 RVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAP 390 (1002)
T ss_dssp EECSEEEECSSCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCC
T ss_pred CCCCCCCCCCCCEEEEEEEECCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCC
T ss_conf 51332335678378889999998995188899777434334454432122233333321131342021000145456788
Q ss_pred CCCEEEEEEEEECCCCCC-CCCCCCEEEEEEEEECCCCC--CCCCCCCCCCCEEEEECCEEEEECCEEEEEEEEEECCCC
Q ss_conf 763388998997158986-66567249999974163258--943214579861795266144315318533189513898
Q 000407 969 KPYVVCQLLEIIVPKEPK-RAEVKSTQVKVRRFFRPDDI--SAEKAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDI 1045 (1558)
Q Consensus 969 ~Py~IgqI~eI~~~~~~~-k~~~~~~~vkVr~fyRPeDi--~~~~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~ 1045 (1558)
+||+||||.+||.+++++ +.+..+++|+|+|||||||| +...+|++|+||||||++++++|+++|+|||.|++.+++
T Consensus 391 ~P~~IgrI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~ 470 (1002)
T 3swr_A 391 EPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDL 470 (1002)
T ss_dssp CCCEEEEEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCHHHCCEEEEEEEECCC
T ss_conf 87555678689705776666777617999998778001156543232577525897545201387990357899870445
Q ss_pred CCCCC-CCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEE
Q ss_conf 98988-854-5873899985518999654477221013568987414332037873234750356631178854687406
Q 000407 1046 PACNA-PAI-FQHIFFCEHLHDPSKGSLKQLPAHIKLRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLAT 1123 (1558)
Q Consensus 1046 ~~~~~-~~~-~dd~Fyce~~YD~~~~~l~~lP~~~kl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~kL~~ 1123 (1558)
+.+.. |.. .+++|||.+.||+.+++|+++|+++++..++++ +|+|||++...+..+...+....+..+|++
T Consensus 471 ~~~~~~~~~~~p~~fyf~~~Yd~~~~~f~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 543 (1002)
T 3swr_A 471 PECVQVYSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGK-------GKGKGKGKPKSQACEPSEPEIEIKLPKLRT 543 (1002)
T ss_dssp SSCHHHHHHTSSSEEEEEEEEETTTTEEECCCSTTSCC-----------------------------CCCCCCCCCCEEE
T ss_pred CCCCHHHCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 5565022057998599977870788856217532421244200-------134453334432124455554334798759
Q ss_pred ECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 51234823899998506995769998278769999998199982110113679999896419986113402689998411
Q 000407 1124 LDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELAASL 1203 (1558)
Q Consensus 1124 lDLFAG~GGls~GLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~~~~el~~~l 1203 (1558)
+||||||||+++||++||+..++||+|+|+.|++||++|||++.++..|++.++..++. ||+.+.
T Consensus 544 iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~--~di~~~------------- 608 (1002)
T 3swr_A 544 LDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMA--GETTNS------------- 608 (1002)
T ss_dssp EEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHH--TCSBCT-------------
T ss_pred EEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC--HHHHHH-------------
T ss_conf 99446744799999977997169999899999999998689996455547777542021--145542-------------
Q ss_pred CHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 32111279999960079822789875545567998753345658999999874419949997035664235664469999
Q 000407 1204 DENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLT 1283 (1558)
Q Consensus 1204 ~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~rPk~fiLENV~glls~~~g~~f~~i 1283 (1558)
....+|.++++|+|+||||||+||.+|+.+.....+.++.|++.|+++|+.++|++||||||+||++++++.+|..+
T Consensus 609 ---~~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~i 685 (1002)
T 3swr_A 609 ---RGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLT 685 (1002)
T ss_dssp ---TCCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHHH
T ss_pred ---HHHHCCCCCCEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHH
T ss_conf ---22320357770389980898663430777787654326679999999999748989999462787521765699999
Q ss_pred HHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH--HHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9988408918999998537889887764899996069999999998765564012--44411454321001235899998
Q 000407 1284 LASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPE--LKIMLSDNYQYSAVRSTANGAPF 1361 (1558)
Q Consensus 1284 i~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~lP~~P~PtH~f~~~~--l~~~l~~~~~~~~~~~~~~~~p~ 1361 (1558)
+..|..+||++.+.+|||++|||||+|+|+||||++++..+|.||+|+|.+.... +.+.+.++. |.....+..++|+
T Consensus 686 ~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~g~~~p~~P~pth~~~~~~~~l~~~~~~~~-~~~~~~~~~~~p~ 764 (1002)
T 3swr_A 686 LRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKK-FVSNITRLSSGPF 764 (1002)
T ss_dssp HHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECTTSCCCCCCCCCBCCCGGGCCCCEEETTEE-ECCSCCCSSCCSB
T ss_pred HHHHHHCCCEEEEEEEEHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
T ss_conf 999986698677999898887998554389999990899777798765555554322222345432-2233333456776
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--CCCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 655487671399989999986432347897156899671174--321101342110877887404779999998889721
Q 000407 1362 RAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM--AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDE 1439 (1558)
Q Consensus 1362 ~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~--~~l~dhi~k~~~~l~l~R~~~Ip~~~G~dwr~lp~~ 1439 (1558)
+++||+|||+|||++.+|.....++|...|.+|||+.||+.. ..+.+|+++.++++++.|+.+||.++|++|++||++
T Consensus 765 ~~vTV~DAIsDLP~i~~g~~~~~~~y~~~p~s~yq~~mR~~~~~~~l~~H~~~~~s~~~~~Ri~~IP~~~Gg~wrdlP~~ 844 (1002)
T 3swr_A 765 RTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNI 844 (1002)
T ss_dssp CCCCHHHHHTTSCCCCTTCCCSEECCCSCCCSHHHHHHHTTCSSCCEECCCCCCCCHHHHHHHHTSCCSTTCCGGGCCCC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHCCHH
T ss_conf 77579997600776556766655456777763789986445666632476435589999999960788899992668555
Q ss_pred CCCCCC---------------------------------CC--------CCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 102356---------------------------------84--------2235566787753347765564110268899
Q 000407 1440 KVKLST---------------------------------GQ--------VVDLIPWCLPNTAKRHNQWKGLFGRLDWEGN 1478 (1558)
Q Consensus 1440 ~v~~~~---------------------------------G~--------~~~l~p~~lp~~~~r~~~~~~~YgRl~~d~~ 1478 (1558)
.+.+.. |. ..+|+|||++++..++++|++.||||+|+++
T Consensus 845 ~~~l~~~~~~~~l~~~~~~~~~g~~~~~~l~~~c~~~~~Gk~~~p~~~~~~~l~p~~~~~~~~r~~~~~~~ygRL~wd~p 924 (1002)
T 3swr_A 845 EVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGF 924 (1002)
T ss_dssp CEECTTSCEEBCCCCCBCCTTTCCCTTCCCCBCSGGGSSSCCCCGGGCCCSBSSCTHHHHHGGGTGGGTTTTCBCCTTSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 53034443221101122322234433211123322223465455311111223321123445545666765015056778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87312578988886520169997446698887418999983625897889876245753899999999999999933
Q 000407 1479 FPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1479 ~pTi~T~~~p~gk~g~~lHP~q~R~LTvRE~ARlQGFPD~y~f~G~~~~~ykQIGNAVPppla~AIg~~I~~aL~~~ 1555 (1558)
++|++|++.+++++|+++||.|+|.||||||||||||||+|.|.|+.+++|+||||||||+||+|||++|.++|..+
T Consensus 925 ~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g~~~~~~~qiGNaVp~~~~~~i~~~i~~~l~~~ 1001 (1002)
T 3swr_A 925 FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAK 1001 (1002)
T ss_dssp BSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 77058537777888740486113679899999867998523876886787224122679999999999999998613
No 3
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=1.00 E-value=1 Score=848.93 Aligned_cols=583 Identities=28% Similarity=0.461 Sum_probs=399.1
Q ss_pred CEEEECEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 23781248952888998159888654344420136556887633889989971589866656724999997416325894
Q 000407 929 SFVYGTAEYFVHDYVYISPHHFTWDKAEGETFKAGRNVGLKPYVVCQLLEIIVPKEPKRAEVKSTQVKVRRFFRPDDISA 1008 (1558)
Q Consensus 929 ~f~~~G~~Y~vGD~VYi~p~~~~~~~~~~~~~~~g~N~~~~Py~IgqI~eI~~~~~~~k~~~~~~~vkVr~fyRPeDi~~ 1008 (1558)
....+|+.|+|||||||+++. .+|++||||.+||.. .++..+++|+|||||+||..
T Consensus 50 ~~~~~~~~~~~~d~~~v~~~~------------------~~~~~i~~i~~~~~~------~~~~~~~~~~~~~r~~d~~~ 105 (784)
T 4ft4_B 50 SAKVDNVVYCLGDDVYVKAGE------------------NEADYIGRITEFFEG------TDQCHYFTCRWFFRAEDTVI 105 (784)
T ss_dssp EEEETTEEEETTCEEEECCST------------------TSCCEEEEEEEEEEE------TTSCEEEEEEEEEEGGGSTT
T ss_pred EEEECCEEEECCCEEEEECCC------------------CCCCEEEEEEEEEEC------CCCCEEEEEEEEECHHHHCC
T ss_conf 236889899679868996889------------------999877899898876------99888999998507355036
Q ss_pred C-------CCCCCCCCEEEEECCEEEEECCEEEEEEEEEECCCCCCCCCCC--CCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 3-------2145798617952661443153185331895138989898885--458738999855189996544772210
Q 000407 1009 E-------KAYCSDIREVYYSEETHLIFVEAIAGKCEVRKKNDIPACNAPA--IFQHIFFCEHLHDPSKGSLKQLPAHIK 1079 (1558)
Q Consensus 1009 ~-------~~~~~D~rELf~Sde~~~vpv~~I~GKC~V~~~~d~~~~~~~~--~~dd~Fyce~~YD~~~~~l~~lP~~~k 1079 (1558)
. .++++|+||||||++.++|++++|.|||+|++.........+. .....|||.+.|.....+|..++....
T Consensus 106 ~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 185 (784)
T 4ft4_B 106 NSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISSENG 185 (784)
T ss_dssp GGGGGCCBTTBCCCTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC-----
T ss_pred CCCCCCCCCCCCCCCCEEEEECCEEEECHHHEEEEEEEEEECCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 31256652010366636897474798565894666899864843351025540687626862000761237567774444
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHCC------CCEEEEEECCCH
Q ss_conf 13568987414332037873234750356631178854687406512348238999985069------957699982787
Q 000407 1080 LRYSSGSLDSEAASRRKKGKCIEGEDELEVEKQGGASQENHLATLDIFAGCGGLSEGLQQSG------ISSTKWAIEYEE 1153 (1558)
Q Consensus 1080 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~kL~~lDLFAG~GGls~GLe~AG------~~~~~~AvE~d~ 1153 (1558)
..... .. ++.+..+. .. ........++|++|||||||||||+||++|| |.+ +||+|+|+
T Consensus 186 ~~~~~--------~~----~~~~~~~~-~~-~~~~~~~~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~v-v~AvE~d~ 250 (784)
T 4ft4_B 186 QSGSD--------TA----SGISSDDV-DL-ETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLET-RWAVDFNS 250 (784)
T ss_dssp --------------------------------------CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEE-EEEEESCH
T ss_pred CCCCC--------CC----CCCCCCCC-CC-CCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEE-EEEEECCH
T ss_conf 55444--------44----44455544-30-0002367788768886757067799999728434776069-99996899
Q ss_pred HHHHHHHHHCCCCCHHCCHHHHHHHHHHHHC-------CCCCCCCCH---------------------------------
Q ss_conf 6999999819998211011367999989641-------998611340---------------------------------
Q 000407 1154 PAGEAFKLNHPESLMLINNCNVILRAVMEKC-------GDAEDCVST--------------------------------- 1193 (1558)
Q Consensus 1154 ~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~-------GDi~d~i~~--------------------------------- 1193 (1558)
.|++||++|||++.++++|++.++...+... ++....+..
T Consensus 251 ~A~~Ty~~Nhp~~~~~~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (784)
T 4ft4_B 251 FACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDREN 330 (784)
T ss_dssp HHHHHHHHHCTTSEEEESCHHHHHHHHHHHHHHHHHTC-----------------------CCCEEEEEEEEESCSSSCS
T ss_pred HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 99999998789973405757774345432012221012455421112332111121112232001110011112221111
Q ss_pred ----------------------------HHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCHH
Q ss_conf ----------------------------26899984113211127999996007982278987554556799--875334
Q 000407 1194 ----------------------------SEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQ--STWSKV 1243 (1558)
Q Consensus 1194 ----------------------------~~~~el~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~--~~~s~~ 1243 (1558)
....... ........+|.+|+||+|+||||||+||.+|+.+. ....+.
T Consensus 331 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~kg~~~~~~D~ 408 (784)
T 4ft4_B 331 GIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFV--QEGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDE 408 (784)
T ss_dssp SEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHHH--HHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGSCTTSTTTST
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCC--CCCCHHHCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 11100010012211223333222233210001111--0110000247789757999669995441452046867645571
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 56589999998744199499970356642356644699999988408918999998537889887764899996069999
Q 000407 1244 QCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT 1323 (1558)
Q Consensus 1244 r~~Li~~~l~~id~~rPk~fiLENV~glls~~~g~~f~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~ 1323 (1558)
|+.|++.|+++|+.+||+|||||||+||++++++.+|+.++..|.++||++.|.+|||++|||||+|+|+||||++++..
T Consensus 409 R~~L~~~~~riv~~~rPk~fvlENV~glls~~~g~~~~~il~~l~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~d~~ 488 (784)
T 4ft4_B 409 KNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMV 488 (784)
T ss_dssp TCHHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTCEEEEEEEEGGGGTCSSCCEEEEEEEECTTSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCCCCEEEEECCCCC
T ss_conf 05789999999998789989998148731335456999999999857975524415788849984031000255316877
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99999876556401244411454321001235899998655487671399989999986432347897156899671174
Q 000407 1324 LPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNM 1403 (1558)
Q Consensus 1324 lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~p~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~ 1403 (1558)
+|.||.|+|............. .............+.+.+|++++|+|||.+.++.......|...+.+++++.++...
T Consensus 489 ~~~~P~pth~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~dai~dlp~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 567 (784)
T 4ft4_B 489 LPKYPLPTYDVVVRGGAPNAFS-QCMVAYDETQKPSLKKALLLGDAISDLPKVQNHQPNDVMEYGGSPKTEFQRYIRLSR 567 (784)
T ss_dssp CCCEECCSBCCCCCSCSCGGGT-TCBCSCCTTCCCCCBCCCCHHHHHTTSCCCCSCCCCSEECCSSCCCSHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 6668876443323455432111-222222212355556666299975213332357776310147777518899876312
Q ss_pred ----------------CCCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC-------CCCCC
Q ss_conf ----------------321101342110877887404779999998889721102356842235--56-------67877
Q 000407 1404 ----------------AVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDL--IP-------WCLPN 1458 (1558)
Q Consensus 1404 ----------------~~l~dhi~k~~~~l~l~R~~~Ip~~~G~dwr~lp~~~v~~~~G~~~~l--~p-------~~lp~ 1458 (1558)
..+.+|.+..++.....|+..+|..+|.+|++++.............. .. ...+.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~r~~~i~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (784)
T 4ft4_B 568 KDMLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPLVPD 647 (784)
T ss_dssp TTTTCCTTCSSCCSSTTCEECCCCCCCCHHHHHHHHHSCSSTTCCGGGSTTEEECGGGCEEECTTSCCCBCTTSSBSSCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 43344443445666666444554333688899999843434687601153100344432224620110134567544542
Q ss_pred C--CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCHHHHHHHCCCCC
Q ss_conf 5--33477655641102688998731257898888652016999744669888741899998362589788987624575
Q 000407 1459 T--AKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAV 1536 (1558)
Q Consensus 1459 ~--~~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTvRE~ARlQGFPD~y~f~G~~~~~ykQIGNAV 1536 (1558)
. ......+...|+|+.|+++++|++|.+.+.+ ++++||.+.|+||||||||||||||+|+|.|+.+++||||||||
T Consensus 648 ~~~~~~~~~~~~~y~rl~~d~ps~TItt~~~~~~--~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~Gs~~~~ykQIGNAV 725 (784)
T 4ft4_B 648 YAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHN--QVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAV 725 (784)
T ss_dssp HHHHGGGGTCCCTTEECCTTCCCSCCCSCCCSSS--SEEECSSSSSBCCHHHHHHHTTCCTTCCCCSCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCEECCCCCCC--CEECCCCCCCCCCHHHHHHHCCCCCCCEECCCHHHHHHHCCCCC
T ss_conf 0001246776765122267886461654336999--74517997848769999997889999886989799872055877
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 3899999999999999933
Q 000407 1537 PPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1537 Pppla~AIg~~I~~aL~~~ 1555 (1558)
||+||+|||++|++||...
T Consensus 726 pp~lA~aIg~~I~~al~~~ 744 (784)
T 4ft4_B 726 AVPVARALGYCLGQAYLGE 744 (784)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999997176
No 4
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=1.00 E-value=1 Score=651.79 Aligned_cols=280 Identities=19% Similarity=0.316 Sum_probs=254.9
Q ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf 76665411145100001356999989766678751366620278798766589500221024543330211333100013
Q 000407 9 SKESNDQKATDSSEMKNKKRKPKSEVPETKDSTSGQKEKMKKLSQDSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAK 88 (1558)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~c~~~~~~~~~~~~~~~~~~~~ 88 (1558)
.|+.++++++++.++||.|.+.+++ .....|.+.+.+.+..+.+ ...++..|.||..|.|++|++..++..++.+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~c~q~~~~~~~~~~~~~~~~~~ 92 (1330)
T 3av4_A 15 APETPEDRDEDEREEKRRKTTRKKL-ESHTVPVQSRSERKAAQSK-SVIPKINSPKCPECGQHLDDPNLKYQQHPEDAVD 92 (1330)
T ss_dssp ------------------------------------------------------CBCTTTCCBTTCTTCCBCCCCSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHCC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 7877633220134665411455553-3233432110233333202-5657889732078885468713226688315555
Q ss_pred CCCCCHHHHHHHHHCCCC----CCCCCCCCCCCEEEECCCCCCCCCC--CCC-CCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 455432468876502468----9999864564048668999866420--012-352789964012357881012466313
Q 000407 89 KDQYADDEIVAVGLTARQ----DGDRPNRRLNDFILHDENGLPQPLE--MLE-IDDLFISGLILPLQESSDREKEKGVRC 161 (1558)
Q Consensus 89 ~~~~~~~e~~a~~~t~~~----~~~~~~~~l~~f~~~d~~g~~~p~~--~~e-~~~l~~sg~~~p~~~~~~~~~~~g~~~ 161 (1558)
|.++|++|.|+++..++. .|++||||||+|+|||++||||||| ||| |++||||||||||||++|+.++ ||+.
T Consensus 93 e~~~l~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~g~~e~~~~~~~sg~~k~~~~~~~~~~~-g~~~ 171 (1330)
T 3av4_A 93 EPQMLTSEKLSIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDENPSMEG-GING 171 (1330)
T ss_dssp HHHHHSCTTCC-----------CCSSCEEEEEEEEEECTTCBBCCSTTSTTTTTCCCEEEEEECCTTCCCCSSTT-CEEE
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCC-CCCH
T ss_conf 167645861244306755422235575322025788758997346646664676499986212000158998778-9512
Q ss_pred CCCCCCCEEEEECCCCCC-EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 345445001330237992-0699732443321246860036789999999867599998610278999999889999877
Q 000407 162 EGFGRIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYELFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGV 240 (1558)
Q Consensus 162 ~~~g~i~~w~i~g~~~g~-~~i~~~t~~a~y~~~~p~~~y~~~~~~~~ek~~~~~~v~~~l~~~~~~~~~~~~e~ll~~v 240 (1558)
+.+|||+||||+|||||+ ++|+|+|+||+|+||+||..|+|+|+.++|||+|||+|++||+.+ +++|||||||+|
T Consensus 172 ~~l~~i~ew~i~~f~g~~~~~i~~~t~~a~y~l~~ps~~yap~~~~~~~~~~~~~~vi~~l~~~----~~~~~~d~~~~~ 247 (1330)
T 3av4_A 172 KNLGPINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNN----PDAVYEDLINKI 247 (1330)
T ss_dssp EEESCCCEEEEECSSSSSCCEEEEECSSCEEEECSBCTTTHHHHHHHHHHHHHHHHHHHHHHHC----TTCCHHHHHHHH
T ss_pred HHCCCHHHHEEEEECCCCEEEEEEECCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHH
T ss_conf 0045215333520257514899985021113436835877789999999999999999998617----878899999887
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 53258873357875401234401213434301322224656532220358999899
Q 000407 241 VRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKFAELPVLVALKE 296 (1558)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~fi~~q~~~~d~~~~~~~~~~~~~p~~~~l~~ 296 (1558)
++++++....++.|+ |++|++|||||++||++||+++++++++++++||||+|..
T Consensus 248 ~~~~~~~~~~~~~~~-e~~l~~h~q~i~~q~~~~~~~~~~~~~~~~~~~~m~~~~~ 302 (1330)
T 3av4_A 248 ETTVPPSTINVNRFT-EDSLLRHAQFVVSQVESYDEAKDDDETPIFLSPCMRALIH 302 (1330)
T ss_dssp HHCCCCTTSSCSCCC-HHHHHHTHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHHHH
T ss_pred HCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 446886334420456-8887654554776786377544543246414378999999
No 5
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=1.00 E-value=1 Score=589.82 Aligned_cols=347 Identities=25% Similarity=0.359 Sum_probs=285.0
Q ss_pred CCCEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 87406512348238999985069957699982787699999981999821101136799998964199861134026899
Q 000407 1119 NHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198 (1558)
Q Consensus 1119 ~kL~~lDLFAG~GGls~GLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~~~~e 1198 (1558)
++++++||||||||+++||+++|+.+ +||+|+|+.|++||++|||++.+++ +|+.+.. ..+
T Consensus 1 m~~~vidLFsG~GGlslG~~~aG~~~-v~avE~d~~a~~t~~~N~~~~~~~~--------------~DI~~~~----~~~ 61 (376)
T 3g7u_A 1 MSLNVIDLFSGVGGLSLGAARAGFDV-KMAVEIDQHAINTHAINFPRSLHVQ--------------EDVSLLN----AEI 61 (376)
T ss_dssp -CCEEEEETCTTSHHHHHHHHHTCEE-EEEECSCHHHHHHHHHHCTTSEEEC--------------CCGGGCC----HHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHCCCCCEEE--------------CCHHHCC----HHH
T ss_conf 99759997437278899999789928-9999688899999998689984571--------------6856648----999
Q ss_pred HHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH
Q ss_conf 98411321112799999600798227898755455679987533456589999998744199499970356642356644
Q 000407 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQ 1278 (1558)
Q Consensus 1199 l~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~rPk~fiLENV~glls~~~g~ 1278 (1558)
+.. . ...++++|+|+||||||+||.+|+. ...+.++.|+++|+++|+.++|++||||||+||++.+++.
T Consensus 62 ~~~----~----~~~~~~~D~i~ggpPCQ~fS~ag~~---~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~ 130 (376)
T 3g7u_A 62 IKG----F----FKNDMPIDGIIGGPPCQGFSSIGKG---NPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSG 130 (376)
T ss_dssp HHH----H----HCSCCCCCEEEECCCCCTTC----------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHH
T ss_pred HHH----H----CCCCCCEEEEEECCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHH
T ss_conf 976----4----0467870289956998771202687---7778247899999999998589899971626764237589
Q ss_pred HHHHHHHHHHCCCCEE-EEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6999999884089189-999985378898877648999960699999999987655640124441145432100123589
Q 000407 1279 TFRLTLASLLEMGYQV-RFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTAN 1357 (1558)
Q Consensus 1279 ~f~~ii~~L~~lGYqv-~~~vLnA~~YGvPQsR~RvfIiaar~g~~lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~ 1357 (1558)
+++.++ .|.++||++ .+.+|||++|||||+|+|+||||++.+..+|.| +|+|...
T Consensus 131 ~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~R~R~~iig~r~~~~~~~~-~p~~~~~---------------------- 186 (376)
T 3g7u_A 131 IRNKAF-NLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGVKKSLKLDIS-DEVFMPK---------------------- 186 (376)
T ss_dssp HHHHHH-HHHHTTEEECCCEEEEGGGGTCSBCCEEEEEEEEEGGGCCCCC-GGGTSCC----------------------
T ss_pred HHHHHH-HHHCCCCCCCCEEEEEHHHCCCCCCCCEEEEEEEECCCCCCCC-CCCCCCC----------------------
T ss_conf 999999-9974898258578998866799978817999998089888766-5434555----------------------
Q ss_pred CCCCCCCCHHHHHCCCCCCCC-CCCC---CCCCCCCCCHHHHHHHHHCCC---------------CCCCHHHHHHCHHHH
Q ss_conf 999865548767139998999-9986---432347897156899671174---------------321101342110877
Q 000407 1358 GAPFRAMTVRDTIGDLPAVGN-GASK---TIMEYQNDPVSWFQKRIRGNM---------------AVLTDHISKEMNELN 1418 (1558)
Q Consensus 1358 ~~p~~~iTv~DaI~DLP~i~~-g~~~---~~~~y~~~p~s~~q~~~r~~~---------------~~l~dhi~k~~~~l~ 1418 (1558)
..+++||+|||+|||.+.. +... ....+...+.++|++.+|... ..+.+|....+++..
T Consensus 187 --~~~~~tv~dai~dlp~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 264 (376)
T 3g7u_A 187 --MIDPVTVKDALYGLPDIIDANWQSDSESWRTIKKDRKGGFYEKLWGQIPRNVGDTESIAKLKNNIISGCTGTLHSKIV 264 (376)
T ss_dssp --SCCCCCHHHHTTTCCSSCEEESSCSSCCCEECCCCCCSHHHHHHHCCCCTTCSCHHHHHHHHTTEESCCEEECCCHHH
T ss_pred --CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf --678880999973377655666654555565567667558999853476544443211001235520135332169889
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf 887404779999998889721102356842235566787753347765564110268899873125789888---86520
Q 000407 1419 LIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMG---KVGMC 1495 (1558)
Q Consensus 1419 l~R~~~Ip~~~G~dwr~lp~~~v~~~~G~~~~l~p~~lp~~~~r~~~~~~~YgRl~~d~~~pTi~T~~~p~g---k~g~~ 1495 (1558)
+.|+..+| +|.+ .+.+.|+||+|+++++|++|...+.. ..+++
T Consensus 265 ~~r~~~~~--~G~~--------------------------------~~~~~~~Rl~~d~ps~Ti~~~~~~~~g~~~~~r~ 310 (376)
T 3g7u_A 265 QERYASLS--FGET--------------------------------DKISRSTRLDPNGFCPTLRAGTARDKGSFQAVRP 310 (376)
T ss_dssp HHHHHTCC--TTCB--------------------------------CTTTCCBBCCTTSCBCCC-------------CCC
T ss_pred HHHHHHCC--CCCC--------------------------------CCCCCEEECCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 99998678--8887--------------------------------6677616657666777520576877776567665
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 169997446698887418999983625897889876245753899999999999999933
Q 000407 1496 FHPDQDRILTVRECARSQGFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1496 lHP~q~R~LTvRE~ARlQGFPD~y~f~G~~~~~ykQIGNAVPppla~AIg~~I~~aL~~~ 1555 (1558)
+||.++|.||||||||||||||+|+|.|+.+++||||||||||+||++||++|+++|.+-
T Consensus 311 ~HP~~~R~lTvRE~ARlQsFPD~f~f~g~~~~~~~qIGNAVPp~la~aia~~I~~~l~~~ 370 (376)
T 3g7u_A 311 IHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYILKGLYNLLNEG 370 (376)
T ss_dssp BCSSSSSBCCHHHHHHHHTCCTTCCCCSSHHHHHHHHHTSCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 688667388799999867999444878773786612046778999999999999999841
No 6
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=1.00 E-value=1 Score=573.28 Aligned_cols=239 Identities=20% Similarity=0.311 Sum_probs=222.1
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCC----CCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 98766589500221024543330211333100013455432468876502468----99998645640486689998664
Q 000407 54 DSEEPRKRPKRMAACTDFKEKSVRISEKSYLVEAKKDQYADDEIVAVGLTARQ----DGDRPNRRLNDFILHDENGLPQP 129 (1558)
Q Consensus 54 ~~~~~~~~p~r~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~t~~~----~~~~~~~~l~~f~~~d~~g~~~p 129 (1558)
..++.+..|.||..|.|+.++++..|++++..+++|.+++++|.+.++..+.. -+++||||||||+|||++||+||
T Consensus 10 ~~~~~~~~~~~c~~c~q~ld~p~l~y~~~p~da~Ee~~~lt~~~l~l~~~~e~~~~~~d~rP~rrLTdF~v~D~~G~l~P 89 (268)
T 3epz_A 10 GRENLYFQGPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCP 89 (268)
T ss_dssp --------CCBCTTTCCBTTCTTCCBCCCCTTCBCHHHHHHHHHHHHHCC----------CCCEEEEEEEEECTTCBBCC
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 44567789722079885346834125589973544266506875377357866545456787515400489899998766
Q ss_pred CCC--CC-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-EEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 200--12-352789964012357881012466313345445001330237992-06997324433212468600367899
Q 000407 130 LEM--LE-IDDLFISGLILPLQESSDREKEKGVRCEGFGRIESWSISGYEDGS-PVIWLSTDIADYDCLKPASSYKKYYE 205 (1558)
Q Consensus 130 ~~~--~e-~~~l~~sg~~~p~~~~~~~~~~~g~~~~~~g~i~~w~i~g~~~g~-~~i~~~t~~a~y~~~~p~~~y~~~~~ 205 (1558)
||| +| +++|||||+|||||+++|+++ +||+|++||||++|||||||||+ |+|||||++|||+|||||++|+|||+
T Consensus 90 ~d~gliE~d~~Lf~SG~vkPi~d~~~~~e-~GV~~~~~GpI~eW~IsGydgGe~~lI~isT~~AdY~L~kPS~~Yk~~~~ 168 (268)
T 3epz_A 90 IDTGLIEKNIELFFSGSAKPIYDDDPSLE-GGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFG 168 (268)
T ss_dssp SSSSTTTTTCCCEEEEEEEEC----C----CCEEEEEECCCSEEEEEC---CCBCEEEEECSSCEEEECCBCTTTHHHHT
T ss_pred CCCCCEECCCEEEEEEEEEECCCCCCCCC-CCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCEEEEECCHHHHHHHHHH
T ss_conf 51334001552799999873346785645-78330122450378984326985415999854478996580798999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999867599998610278999999889999877532588733578754012344012134343013222246565322
Q 000407 206 LFFEKARACIEVYKKLSKTSGGNSDCSIDELLAGVVRSMSGSKCFRGGVSIKDFVISQGEFIFNQLIGLDETSKKNDQKF 285 (1558)
Q Consensus 206 ~~~ek~~~~~~v~~~l~~~~~~~~~~~~e~ll~~v~~~~~~~~~~~~~~~~~~~l~~~~~fi~~q~~~~d~~~~~~~~~~ 285 (1558)
+|+|||++|++||++|+++ |++|||||||+|+|||++.+..++.|| ||||||||||||+||+|||+|+++||++|
T Consensus 169 ~f~eK~~~s~~Vie~L~~~----p~~syedLL~~v~~s~~p~~~~~~~fs-ed~li~~gqFI~~Qv~~~D~~~~~de~~~ 243 (268)
T 3epz_A 169 LMQEKIYISKIVVEFLQSN----SDSTYEDLINKIETTVPPSGLNLNRFT-EDSLLRHAQFVVEQVESYDEAGDSDEQPI 243 (268)
T ss_dssp TCCHHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHCBCCGGGCCCCCC-HHHHHTTHHHHHHHHHHHHHHCC---CCG
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 9999999999999999748----999999999998701787544455548-99998500328977743213445666603
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 2035899989974
Q 000407 286 AELPVLVALKEES 298 (1558)
Q Consensus 286 ~~~p~~~~l~~~~ 298 (1558)
+++||||+|-.-.
T Consensus 244 ~~~P~mr~li~l~ 256 (268)
T 3epz_A 244 FLTPCMRDLIKLA 256 (268)
T ss_dssp GGSHHHHHHHHHT
T ss_pred ECCHHHHHHHHHH
T ss_conf 3078999999984
No 7
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=1.00 E-value=1 Score=515.92 Aligned_cols=326 Identities=27% Similarity=0.413 Sum_probs=231.4
Q ss_pred CEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 40651234823899998506995769998278769999998199982110113679999896419986113402689998
Q 000407 1121 LATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAELA 1200 (1558)
Q Consensus 1121 L~~lDLFAG~GGls~GLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~~~~el~ 1200 (1558)
|++|||||||||+++||++||+.+ +||+|+|+.|++||++|||...+ +|||.+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~-v~a~e~d~~a~~ty~~N~~~~~~---------------~~DI~~----------- 53 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRI-ICANEYDKSIWKTYESNHSAKLI---------------KGDISK----------- 53 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEE-EEEEECCTTTHHHHHHHCCSEEE---------------ESCGGG-----------
T ss_pred CEEEEECCCCCHHHHHHHHCCCEE-EEEEECCHHHHHHHHHHCCCCCC---------------CCCHHH-----------
T ss_conf 909994767568999999879979-99996899999999987799965---------------388235-----------
Q ss_pred HHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 41132111279999960079822789875545567998753345658999999874419949997035664235664469
Q 000407 1201 ASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKGQTF 1280 (1558)
Q Consensus 1201 ~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~rPk~fiLENV~glls~~~g~~f 1280 (1558)
+.. ..+| ++|+|+||||||+||.+|+.+. ..+.|+.|+++|+++|+.+||+|||||||+||++.+++..|
T Consensus 54 --i~~---~~~~---~~D~l~ggpPCQ~fS~ag~~~g--~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~ 123 (331)
T 3ubt_Y 54 --ISS---DEFP---KCDGIIGGPPSQSWSEGGSLRG--IDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAV 123 (331)
T ss_dssp --CCG---GGSC---CCSEEECCCCGGGTEETTEECC--TTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHH
T ss_pred --CCH---HHCC---CCCEEEECCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHH
T ss_conf --998---3687---6467985289877677887368--77741578888899874159829996301330012243203
Q ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999884089189999985378898877648999960699999999987655640124441145432100123589999
Q 000407 1281 RLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAP 1360 (1558)
Q Consensus 1281 ~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~p 1360 (1558)
..++..|.++||++.+.+|||.+|||||+|+|+||||.+.+...+..|...|.
T Consensus 124 ~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~--------------------------- 176 (331)
T 3ubt_Y 124 QEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHL--------------------------- 176 (331)
T ss_dssp HHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCS---------------------------
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC---------------------------
T ss_conf 32211222689577788614565788865644889987278876778998767---------------------------
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 86554876713999899999864323478971568996711743211013421108778874047799999988897211
Q 000407 1361 FRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEK 1440 (1558)
Q Consensus 1361 ~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~~~l~dhi~k~~~~l~l~R~~~Ip~~~G~dwr~lp~~~ 1440 (1558)
...|++|+|+||+.......... . ..+......+|.. ....+.....
T Consensus 177 -~~~t~~d~i~~l~~~~~~~~~~~------~-------~~~~~~~~~~~~~-----------------~~~~~~~~~~-- 223 (331)
T 3ubt_Y 177 -IKPTFKDVIWDLKDNPIPALDKN------K-------TNGNKCIYPNHEY-----------------FIGSYSTIFM-- 223 (331)
T ss_dssp -CCCCGGGTSGGGSSSCEECBGGG------B-------CCGGGSSSTTCEE-----------------CCSCCCTTGG--
T ss_pred -CCCCHHHHHHHCCCCCCCCCCCC------C-------CCCCCCCCCCHHH-----------------HCCCCCCCCC--
T ss_conf -88868998654325775422111------1-------3555332564022-----------------1143110013--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE
Q ss_conf 02356842235566787753347765564110268899873125789888865201699974466988874189999836
Q 000407 1441 VKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQ 1520 (1558)
Q Consensus 1441 v~~~~G~~~~l~p~~lp~~~~r~~~~~~~YgRl~~d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTvRE~ARlQGFPD~y~ 1520 (1558)
... ....|..+... ....+.+.++.+..+..|.++.. .......||.+.|.||||||||||||||+|.
T Consensus 224 ---~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~ 291 (331)
T 3ubt_Y 224 ---SRN---RVRQWNEPAFT---VQASGRQCQLHPQAPVMLKVSKN---LNKFVEGKEHLYRRLTVRECARVQGFPDDFI 291 (331)
T ss_dssp ---GSC---CBCCTTSCBCC---CCSCSTTCCBCTTSCCCEEEETT---EEECCTTCGGGCCBCBHHHHHHHHTCCTTCC
T ss_pred ---CCC---CCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEECCC---CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCE
T ss_conf ---455---42113456642---01467533456654213530478---8863279998185787999998488998988
Q ss_pred EC-CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 25-897889876245753899999999999999933
Q 000407 1521 FH-GSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1521 f~-G~~~~~ykQIGNAVPppla~AIg~~I~~aL~~~ 1555 (1558)
|. ++.+++||||||||||+||++||++|+++|+..
T Consensus 292 f~~~s~~~~ykqiGNAVpp~la~~I~~~I~~~L~~~ 327 (331)
T 3ubt_Y 292 FHYESLNDGYKMIGNAVPVNLAYEIAKTIKSALEIC 327 (331)
T ss_dssp CCCSBHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 588998888611715706999999999999998455
No 8
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=1.00 E-value=1 Score=497.16 Aligned_cols=313 Identities=23% Similarity=0.360 Sum_probs=243.1
Q ss_pred CCCCEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 68740651234823899998506995769998278769999998199982110113679999896419986113402689
Q 000407 1118 ENHLATLDIFAGCGGLSEGLQQSGISSTKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAA 1197 (1558)
Q Consensus 1118 ~~kL~~lDLFAG~GGls~GLe~AG~~~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~~~~ 1197 (1558)
..+++++|||||+||+++||+++|+.+ +||+|+|+.|++||++|||... ++|+.+
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~-v~~~e~d~~a~~t~~~N~~~~~----------------~~Di~~-------- 63 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAEC-VYSNEWDKYAQEVYEMNFGEKP----------------EGDITQ-------- 63 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEE-EEEECCCHHHHHHHHHHHSCCC----------------BSCGGG--------
T ss_pred CCCCCEEEECCCCCHHHHHHHHCCCEE-EEEEECCHHHHHHHHHHCCCCC----------------CCCHHH--------
T ss_conf 689828997887188899999889939-9999589999999999759988----------------688777--------
Q ss_pred HHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 99841132111279999960079822789875545567998753345658999999874419949997035664235664
Q 000407 1198 ELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQPRYFLLENVRNFVSFNKG 1277 (1558)
Q Consensus 1198 el~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~rPk~fiLENV~glls~~~g 1277 (1558)
+.. ..+| ++|+|+||||||+||.+|+.+ ...+.++.|+++|+++++.++|++|+||||+|+++.+++
T Consensus 64 -----~~~---~~~~---~~D~l~~gpPCQ~fS~ag~~~--g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~ 130 (327)
T 2c7p_A 64 -----VNE---KTIP---DHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNG 130 (327)
T ss_dssp -----SCG---GGSC---CCSEEEEECCCTTTCTTSCCC--GGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGG
T ss_pred -----CCH---HHCC---CCCEEEECCCCCCCCHHCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCC
T ss_conf -----698---4688---778899789987703112567--876616589999999999615758998276788740553
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 4699999988408918999998537889887764899996069999--99999876556401244411454321001235
Q 000407 1278 QTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDT--LPEWPEPMHVFAAPELKIMLSDNYQYSAVRST 1355 (1558)
Q Consensus 1278 ~~f~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~--lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~ 1355 (1558)
..|..++..|.++||++.+.+|||.+||+||+|+|+||+|.+.+.. .+.||.|+|.
T Consensus 131 ~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~---------------------- 188 (327)
T 2c7p_A 131 NTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFEL---------------------- 188 (327)
T ss_dssp HHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCC----------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC----------------------
T ss_conf 7999999999858997999998889969984430899999807877666568987678----------------------
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 89999865548767139998999998643234789715689967117432110134211087788740477999-99988
Q 000407 1356 ANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRP-GADWH 1434 (1558)
Q Consensus 1356 ~~~~p~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~~~l~dhi~k~~~~l~l~R~~~Ip~~~-G~dwr 1434 (1558)
..|++|+|+++|... .|...+ .++. + .+.... +. .+
T Consensus 189 -------~~tl~d~l~~~~~~~--------~~~~~~---------------~~~~---~---------~l~~~~~~~-~~ 225 (327)
T 2c7p_A 189 -------NTFVKDLLLPDSEVE--------HLVIDR---------------KDLV---M---------TNQEIEQTT-PK 225 (327)
T ss_dssp -------CCCGGGTCCCGGGTG--------GGEECC---------------TTCE---E---------CSCCCSSCC-SS
T ss_pred -------CCCHHHHHCCCCCCC--------CCCCCC---------------CCCE---E---------EEECCCCCC-CC
T ss_conf -------874999843467754--------332467---------------7642---5---------720334676-51
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 89721102356842235566787753347765564110268899873125789-88886520169997446698887418
Q 000407 1435 DLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ-PMGKVGMCFHPDQDRILTVRECARSQ 1513 (1558)
Q Consensus 1435 ~lp~~~v~~~~G~~~~l~p~~lp~~~~r~~~~~~~YgRl~~d~~~pTi~T~~~-p~gk~g~~lHP~q~R~LTvRE~ARlQ 1513 (1558)
.... .+. +. ....|+|+.|+++++|++|... ++++.++.+||.+.|.||||||||||
T Consensus 226 ~~~~-----------~~~---------~~--~~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQ 283 (327)
T 2c7p_A 226 TVRL-----------GIV---------GK--GGQGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVM 283 (327)
T ss_dssp CCEE-----------EES---------TT--CCTTCEEEETTSCBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHT
T ss_pred HHHH-----------HHC---------CC--CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 0356-----------640---------68--8536562557887576465887766898744799987578799999977
Q ss_pred CCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999983625897889876245753899999999999999933
Q 000407 1514 GFPDSYQFHGSIQHKHRQIGNAVPPTLAFALGRKLKEAVESK 1555 (1558)
Q Consensus 1514 GFPD~y~f~G~~~~~ykQIGNAVPppla~AIg~~I~~aL~~~ 1555 (1558)
||||+|.|.|+.+++||||||||||+|+++||++|.++|..+
T Consensus 284 gFPd~f~f~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~l~~~ 325 (327)
T 2c7p_A 284 GYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFK 325 (327)
T ss_dssp TCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 899680827998999937038888999999999999998618
No 9
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=1.00 E-value=1 Score=452.77 Aligned_cols=335 Identities=17% Similarity=0.188 Sum_probs=231.3
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHCCC--CE---EEEEECCCHHHHHHHHHHCCCCCHH-CCHHHH---------------
Q ss_conf 46874065123482389999850699--57---6999827876999999819998211-011367---------------
Q 000407 1117 QENHLATLDIFAGCGGLSEGLQQSGI--SS---TKWAIEYEEPAGEAFKLNHPESLML-INNCNV--------------- 1175 (1558)
Q Consensus 1117 ~~~kL~~lDLFAG~GGls~GLe~AG~--~~---~~~AvE~d~~A~~ty~~N~P~~~~~-~~~~n~--------------- 1175 (1558)
+..+++++|||||+||+++||+++|+ .+ +++|+|+|+.|+.+|++||+..... .+.|+.
T Consensus 7 ~~~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~ 86 (403)
T 4dkj_A 7 KIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISE 86 (403)
T ss_dssp CCEEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 46655089980683879999998487554221268988569999999998738875411566666654223332343211
Q ss_pred --H-------HHHHHH-------HCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf --9-------999896-------419986113402689998411321112799999600798227898755455679987
Q 000407 1176 --I-------LRAVME-------KCGDAEDCVSTSEAAELAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQST 1239 (1558)
Q Consensus 1176 --i-------l~~~~~-------~~GDi~d~i~~~~~~el~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~ 1239 (1558)
+ ++.+.. ..|||.+ +. ...+| +.+|+|+||||||+||.+|+.+...
T Consensus 87 ~~i~~l~~~~l~~i~~~~~~~~~~~~DI~~-------------i~---~~~ip--~~vDll~ggpPCQ~fS~ag~~~g~~ 148 (403)
T 4dkj_A 87 YGIKKINNTIKASYLNYAKKHFNNLFDIKK-------------VN---KDNFP--KNIDIFTYSFPCQDLSVQGLQKGID 148 (403)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHSCBCCCGGG-------------CC---TTTSC--SSCSEEEECCCCTTTCTTSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCHHH-------------CC---HHHCC--CCCCEEEEECCCCCHHHHCCCCCCC
T ss_conf 100124578888887640567886255635-------------57---74579--8775799869988777728977877
Q ss_pred C-CHHHHHHHHHHHHHHHH--------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 5-33456589999998744--------19949997035664235664469999998840891899999853788988776
Q 000407 1240 W-SKVQCEMILAFLSFADY--------FQPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSR 1310 (1558)
Q Consensus 1240 ~-s~~r~~Li~~~l~~id~--------~rPk~fiLENV~glls~~~g~~f~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR 1310 (1558)
. .+.++.|++.++++++. .+|++||||||+||++.+++.+|..++..|.++||++.+.+|||.+||+||+|
T Consensus 149 d~~~~r~~L~~~~~rii~~~~~k~~~~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R 228 (403)
T 4dkj_A 149 KELNTRSGLLWEIERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNR 228 (403)
T ss_dssp GGGCCSGGGHHHHHHHHHHHHHHSCGGGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCC
T ss_conf 53111220589999999986531000458977987054314432020599999999986897578999468985998641
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48999960699999999987655640124441145432100123589999865548767139998999998643234789
Q 000407 1311 KRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTANGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQND 1390 (1558)
Q Consensus 1311 ~RvfIiaar~g~~lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~~~~p~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~ 1390 (1558)
+|+||||.+.+ +.||+|+|.-. + .. . .....+++|.|..-. .. .|...
T Consensus 229 ~R~fiva~r~~---f~fP~~~~~~~-~--~~--------------~---~~~~~~l~dile~~~--~~-------~y~~~ 276 (403)
T 4dkj_A 229 ERVFCLSIRDD---YLEKTGFKFKE-L--EK--------------V---KNPPKKIKDILVDSS--NY-------KYLNL 276 (403)
T ss_dssp EEEEEEEEEHH---HHHHHCCCCCC-G--GG--------------C---CCCCCCGGGGCCCCS--CC-------CCCCC
T ss_pred EEEEEEEECCC---CCCCCCCCCCC-C--CC--------------C---CCCCCCHHHHHCCCC--CC-------CCCHH
T ss_conf 59999998389---99987555555-4--21--------------2---456533777753445--64-------41002
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 71568996711743211013421108778874047799999988897211023568422355667877533477655---
Q 000407 1391 PVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDLPDEKVKLSTGQVVDLIPWCLPNTAKRHNQWK--- 1467 (1558)
Q Consensus 1391 p~s~~q~~~r~~~~~l~dhi~k~~~~l~l~R~~~Ip~~~G~dwr~lp~~~v~~~~G~~~~l~p~~lp~~~~r~~~~~--- 1467 (1558)
.. . .++... .+... +. .....+|.
T Consensus 277 ~~------------------------------~-----------~~~~~~--~~~~~---~~-------~~~~~~~~~~~ 303 (403)
T 4dkj_A 277 NK------------------------------Y-----------ETTTFR--ETKSN---II-------SRPLKNYTTFN 303 (403)
T ss_dssp TT------------------------------S-----------CCCCCE--ECTTS---BE-------EEECTTSCSCG
T ss_pred HH------------------------------H-----------CCCCCC--CCCCC---HH-------CCCCCCCCCCC
T ss_conf 23------------------------------3-----------044333--32000---01-------02565654425
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCC-CCEEC-----CCHHHHHHHCCCCCCHHH
Q ss_conf 64110268899873125789888865-201699974466988874189999-83625-----897889876245753899
Q 000407 1468 GLFGRLDWEGNFPTSITDPQPMGKVG-MCFHPDQDRILTVRECARSQGFPD-SYQFH-----GSIQHKHRQIGNAVPPTL 1540 (1558)
Q Consensus 1468 ~~YgRl~~d~~~pTi~T~~~p~gk~g-~~lHP~q~R~LTvRE~ARlQGFPD-~y~f~-----G~~~~~ykQIGNAVPppl 1540 (1558)
.......+++.++|++|.. +..+ ..++....|.||+|||+||||||| +|.+. .+.+++|+|+||||+|+|
T Consensus 304 ~~~~v~~~~~~~~Tlt~~~---~~~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v 380 (403)
T 4dkj_A 304 SENYVYNINGIGPTLTASG---ANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKI 380 (403)
T ss_dssp GGSEEEETTSBBCCCCSSS---GGGSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHH
T ss_pred CCCCEECCCCCCCCEECCC---CCCEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCHHH
T ss_conf 6761333777646561698---8742687368974407799999976998788100110488998999956388408999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999993308
Q 000407 1541 AFALGRKLKEAVESKRS 1557 (1558)
Q Consensus 1541 a~AIg~~I~~aL~~~~~ 1557 (1558)
++||+++|.++|.+...
T Consensus 381 ~~~i~~~i~~~l~~~~~ 397 (403)
T 4dkj_A 381 LEAIFNTLEFVNNEELE 397 (403)
T ss_dssp HHHHHHTCCCCCCC---
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999751630
No 10
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=1.00 E-value=1 Score=450.88 Aligned_cols=332 Identities=21% Similarity=0.311 Sum_probs=216.6
Q ss_pred CCEEECCCCCCHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 740651234823899998506995-7699982787699999981999821101136799998964199861134026899
Q 000407 1120 HLATLDIFAGCGGLSEGLQQSGIS-STKWAIEYEEPAGEAFKLNHPESLMLINNCNVILRAVMEKCGDAEDCVSTSEAAE 1198 (1558)
Q Consensus 1120 kL~~lDLFAG~GGls~GLe~AG~~-~~~~AvE~d~~A~~ty~~N~P~~~~~~~~~n~il~~~~~~~GDi~d~i~~~~~~e 1198 (1558)
+++++|||||+||+++||+++|+. .++||+|+|+.|+++|++||+++.++. +|+.+.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~--------------~Di~~~-------- 59 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLA--------------KTIEGI-------- 59 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEEC--------------SCGGGC--------
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCC--------------CCHHHC--------
T ss_conf 9759996957538999999779984589999699999999998665666536--------------777775--------
Q ss_pred HHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCC
Q ss_conf 9841132111279999960079822789875545567998753345658999999874419--94999703566423566
Q 000407 1199 LAASLDENVINNLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFQ--PRYFLLENVRNFVSFNK 1276 (1558)
Q Consensus 1199 l~~~l~~~~~~~lP~pg~VDiI~GGPPCQgFS~anr~~~~~~s~~r~~Li~~~l~~id~~r--Pk~fiLENV~glls~~~ 1276 (1558)
....+.. .++|+|+||||||+||.+|+.+. ..+.|+.|+++++++++.++ |++||||||+||++
T Consensus 60 -----~~~~~~~----~~~D~l~~gpPCq~fS~ag~~~g--~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~--- 125 (343)
T 1g55_A 60 -----TLEEFDR----LSFDMILMSPPCQPFTRIGRQGD--MTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEV--- 125 (343)
T ss_dssp -----CHHHHHH----HCCSEEEECCC--------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGG---
T ss_pred -----CHHHCCC----CCCCEEEECCCCCCHHHCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC---
T ss_conf -----6967376----77577997689846534688677--667532699999999998547998999967721037---
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 44699999988408918999998537889887764899996069999999998765564012444114543210012358
Q 000407 1277 GQTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPHDTLPEWPEPMHVFAAPELKIMLSDNYQYSAVRSTA 1356 (1558)
Q Consensus 1277 g~~f~~ii~~L~~lGYqv~~~vLnA~~YGvPQsR~RvfIiaar~g~~lP~~P~PtH~f~~~~l~~~l~~~~~~~~~~~~~ 1356 (1558)
+.+|..++..|.++||++.+.+|||.+||+||+|+|+||+|.+.+.. ..||.|+|...
T Consensus 126 ~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~-~~~p~~~~~~~--------------------- 183 (343)
T 1g55_A 126 SSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEP-LPFQAPGQVLM--------------------- 183 (343)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEESSSC-CTTCCTTCEES---------------------
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEEEEECCCC-CCCCCCCCHHH---------------------
T ss_conf 79999999999978996679998888879897551899999948987-77888753243---------------------
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99998655487671399989999986432347897156899671174321101342110877887404779999998889
Q 000407 1357 NGAPFRAMTVRDTIGDLPAVGNGASKTIMEYQNDPVSWFQKRIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGADWHDL 1436 (1558)
Q Consensus 1357 ~~~p~~~iTv~DaI~DLP~i~~g~~~~~~~y~~~p~s~~q~~~r~~~~~l~dhi~k~~~~l~l~R~~~Ip~~~G~dwr~l 1436 (1558)
..+..++++++++...........+.+.... .+ .-.+.+..+.+...+. ++..
T Consensus 184 ------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~--------------~~-~~~~~~~~~~~~~~~~-----~~~~- 236 (343)
T 1g55_A 184 ------EFPKIEIHRKNQQDSDLSVKMLKDFLEDDTD--------------VN-QYLLPPKSLLRYALLL-----DIVQ- 236 (343)
T ss_dssp ------SCCC------------CCCCCGGGGCCTTCC--------------HH-HHBCCHHHHHHHGGGC-----CEEC-
T ss_pred ------HCCHHHHCCCCCCCCCCCCCCHHHHHCCCCC--------------HH-HCCCCHHHHHHHHHHH-----CCCC-
T ss_conf ------2887674375576666666667887535762--------------44-4058889999999983-----7778-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEE---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 72110235684223556678775334-776556411---02688998731257898888652016999744669888741
Q 000407 1437 PDEKVKLSTGQVVDLIPWCLPNTAKR-HNQWKGLFG---RLDWEGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARS 1512 (1558)
Q Consensus 1437 p~~~v~~~~G~~~~l~p~~lp~~~~r-~~~~~~~Yg---Rl~~d~~~pTi~T~~~p~gk~g~~lHP~q~R~LTvRE~ARl 1512 (1558)
+.. ....|+...... ..+....+. +..|+...++..|.. .+.....+||.+.|.||+||||||
T Consensus 237 ~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~~R~lT~RE~aRL 303 (343)
T 1g55_A 237 PTC-----------RRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLS--QEEQITKLLILKLRYFTPKEIANL 303 (343)
T ss_dssp TTC-----------SCCCCCCTTTTTCCTTSCCEEECCSSCCHHHHHHTTTTCC--HHHHHHHHHTTCEECCCHHHHHHH
T ss_pred CCC-----------CCCCHHHCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCC--CCCCEECCCCCCCCCCCHHHHHHH
T ss_conf 112-----------4310111046116145345126654354222035456789--743201137887510679999997
Q ss_pred CCCCCCCEECC--CHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999836258--97889876245753899999999999
Q 000407 1513 QGFPDSYQFHG--SIQHKHRQIGNAVPPTLAFALGRKLK 1549 (1558)
Q Consensus 1513 QGFPD~y~f~G--~~~~~ykQIGNAVPppla~AIg~~I~ 1549 (1558)
|||||+|.|.| +.+++||||||||||+|+++|++.|.
T Consensus 304 qgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l~ 342 (343)
T 1g55_A 304 LGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 342 (343)
T ss_dssp TTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 699924306889998889988548666899999999984
Done!