BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000409
(1555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 195/430 (45%), Gaps = 98/430 (22%)
Query: 1137 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGTGLGP-TLEFYTLLSRDLQ 1190
+++V R+ I+D A +EM + + K L VE+ GE G G + EF+ L+ ++
Sbjct: 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIF 66
Query: 1191 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPW-PPSADASEGG 1249
+ M+ + S++ LF W PS+ +EG
Sbjct: 67 NPDIGMFTYDESTK-----------------------------LF---WFNPSSFETEGQ 94
Query: 1250 QFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQ 1309
F L+G V+ A+ + +LD+ F Y+ ++G + D L
Sbjct: 95 --------FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRD-----------LG 135
Query: 1310 ELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT-----LPGYPD-YILKPGD 1363
+ H ++ Q L+ + L + G +D+ + F L G P Y LK
Sbjct: 136 DSHPVLY--QSLKDL----------LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENG 183
Query: 1364 ENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLC 1420
+ + I N +E+++L D + + +Q +AFR GF+ V + + L+ +F P E++ L+C
Sbjct: 184 DKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 243
Query: 1421 GRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 1480
G R L + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GG
Sbjct: 244 GSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGG 302
Query: 1481 LAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKK 1540
L L K+ I + P+T + LP+ TC N L LP YS+KE + ++
Sbjct: 303 LGKL--KMIIAK----NGPDT------------ERLPTSHTCFNVLLLPEYSSKEKLKER 344
Query: 1541 LVYAISEGQG 1550
L+ AI+ +G
Sbjct: 345 LLKAITYAKG 354
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 118 bits (296), Expect = 2e-26, Method: Composition-based stats.
Identities = 94/308 (30%), Positives = 139/308 (45%), Gaps = 55/308 (17%)
Query: 1255 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1314
++YFR +GR +A AL G+ +D FS FYK +L + L D+ D EF
Sbjct: 130 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEF---------- 179
Query: 1315 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1372
L + +N EE DL + +++ L + LKP N+ + N E
Sbjct: 180 ---YNSLIWVKENNIEEC-DLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKE 230
Query: 1373 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1428
EYI +V + + G+ Q +AF GFN++ LQ F EL+ LLCG +E+ W+
Sbjct: 231 EYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQR 290
Query: 1429 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKL 1488
A+ Y S I+ + + E +++ QFVTG RLP GG A L
Sbjct: 291 HAIYRR------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL---- 340
Query: 1489 TIVRKHSSTAPNTASNGTGPSE------SADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1542
SN GP + ++ LP TC N L LPPY + E + +KL+
Sbjct: 341 ------------MGSN--GPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLL 386
Query: 1543 YAISEGQG 1550
+AI E +G
Sbjct: 387 FAIEETEG 394
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 129/301 (42%), Gaps = 43/301 (14%)
Query: 1255 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1314
+ YF +GR +A AL G+ +D FS FYK +L +L + D+ D EF
Sbjct: 111 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF---------- 160
Query: 1315 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1372
L + +N EE + +E L + LK G N+ + N +
Sbjct: 161 ---YNSLIWIRDNNIEECGLEMYFSVDME------ILGKVTSHDLKLGGSNILVTEENKD 211
Query: 1373 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1428
EYI L+ + G+ Q +AF GFN+V + LQ F EL+ +LCG +E+ W+
Sbjct: 212 EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQR 271
Query: 1429 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKL 1488
+ H YT S I+ + + E + + QFVTG RLP GG A L
Sbjct: 272 NTVYRH------YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL---- 321
Query: 1489 TIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1548
N D LP TC N L LPPY + E + +KL++AI E
Sbjct: 322 --------MGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
Query: 1549 Q 1549
+
Sbjct: 374 E 374
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 113 bits (283), Expect = 7e-25, Method: Composition-based stats.
Identities = 113/428 (26%), Positives = 189/428 (44%), Gaps = 85/428 (19%)
Query: 1137 KVRVSRNRIL-DSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQRV 1192
++++ R +L DS ++M + + KA L +E+ GE G G E++ L+S+++
Sbjct: 30 EMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNP 89
Query: 1193 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1252
++ S+++N +++I+ + G +
Sbjct: 90 YYGLFEY-SATDNYTLQINPNSGLCNEDH------------------------------- 117
Query: 1253 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1312
+ YF+ +GRV A+ G+LLD F FYK++L + LHD+ D+E+ L+ +
Sbjct: 118 --LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWI- 174
Query: 1313 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDIN-- 1369
+ +D E +DLRF +D L G + LK G + +
Sbjct: 175 -----------LENDPTE--LDLRF--------IIDEELFGQTHQHELKNGGSEIVVTNK 213
Query: 1370 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL---- 1425
N +EYI LV+ I +QM AF+ GF ++ ++IF +EL+ L+CG ++
Sbjct: 214 NKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVND 273
Query: 1426 WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLN 1485
W EH K+ +GY+A I + + +++ QFVTG R+P G A L
Sbjct: 274 WR-----EHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAEL- 327
Query: 1486 PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAI 1545
+ S P + T + LP TC N L LPPY + E ++ KL AI
Sbjct: 328 --------YGSNGPQSF---TVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAI 376
Query: 1546 SEGQGSFD 1553
QG FD
Sbjct: 377 ENTQG-FD 383
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 183/423 (43%), Gaps = 76/423 (17%)
Query: 1135 RQKVRVSRNRILD-SAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQ 1190
R ++++ RN I + S ++M + KA L +E+ E G G E++ LLS+++
Sbjct: 27 RFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMF 86
Query: 1191 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1250
++ S+++N +++I+ + G +
Sbjct: 87 NPYYGLFEY-SATDNYTLQINPNSGLCNEDH----------------------------- 116
Query: 1251 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1310
+ YF +GRV A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+
Sbjct: 117 ----LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKW 172
Query: 1311 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN 1369
+ + +D E +DL F C+D G + LKP + +
Sbjct: 173 I------------LENDPTE--LDLMF--------CIDEENFGQTYQVDLKPNGSEIMVT 210
Query: 1370 --NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWE 1427
N EYI LV+ + +QM AF GF ++ I ++IF +EL+ L+CG ++ +
Sbjct: 211 NENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-D 269
Query: 1428 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPK 1487
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 270 VNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL--- 326
Query: 1488 LTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 1547
+ S P T + + LP T N L LPPY T E + +KL+ A+
Sbjct: 327 ------YGSNGPQLF---TIEQWGSPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVEN 377
Query: 1548 GQG 1550
QG
Sbjct: 378 AQG 380
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 183/423 (43%), Gaps = 76/423 (17%)
Query: 1135 RQKVRVSRNRILD-SAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRDLQ 1190
R ++++ RN I + S ++M + KA L +E+ E G G E++ LLS+++
Sbjct: 27 RFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMF 86
Query: 1191 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1250
++ S+++N +++I+ + G +
Sbjct: 87 NPYYGLFEY-SATDNYTLQINPNSGLCNEDH----------------------------- 116
Query: 1251 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1310
+ YF +GRV A+ G+LLD F FYK++LG ++ L+D+ D+E+ L+
Sbjct: 117 ----LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKW 172
Query: 1311 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN 1369
+ + +D E +DL F C+D G + LKP + +
Sbjct: 173 I------------LENDPTE--LDLMF--------CIDEENFGQTYQVDLKPNGSEIMVT 210
Query: 1370 --NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWE 1427
N EYI LV+ + +QM AF GF ++ I ++IF +EL+ L+CG ++ +
Sbjct: 211 NENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDV-D 269
Query: 1428 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPK 1487
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 270 VNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL--- 326
Query: 1488 LTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 1547
+ S P T + + LP T N L LPPY T E + +KL+ A+
Sbjct: 327 ------YGSNGPQLF---TIEQWGSPEKLPRAHTSFNRLDLPPYETFEDLREKLLMAVEN 377
Query: 1548 GQG 1550
QG
Sbjct: 378 AQG 380
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 177/437 (40%), Gaps = 88/437 (20%)
Query: 1132 RLERQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRD 1188
R E V V R+ + + + + + S + K L + + GE G G L E+Y ++SR+
Sbjct: 44 RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISRE 103
Query: 1189 LQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEG 1248
+ A++R++ GD V + PS+ A+
Sbjct: 104 MFNPMYALFRTSP-----------------------GDRVTYTIN-------PSSHANPN 133
Query: 1249 GQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKIL 1308
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D F + L
Sbjct: 134 H-----LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 188
Query: 1309 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI 1368
L + +D DL F E F + D LKP N+ +
Sbjct: 189 VYL------------LENDVSTLGYDLTFSTEVQE-----FGVAEVRD--LKPNGANILV 229
Query: 1369 N--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELW 1426
N +EY+ LV + I +Q+ AF GF ++ + IFT EL+ L+ G
Sbjct: 230 TEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGL---- 285
Query: 1427 EPAALAEHIKFD---HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1483
P + +K + H Y + S I + F + F QFVTG ++P G A
Sbjct: 286 -PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAA 344
Query: 1484 LN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMY 1538
L K I R ST D LPS TC N L LP Y + E +
Sbjct: 345 LEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLPAYESFEKLR 388
Query: 1539 KKLVYAISEGQGSFDLS 1555
L+ AI E F L+
Sbjct: 389 HMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 176/437 (40%), Gaps = 88/437 (20%)
Query: 1132 RLERQKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTGLGPTL-EFYTLLSRD 1188
R E V V R+ + + + + + S + K L + + GE G G L E+Y ++SR+
Sbjct: 27 RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISRE 86
Query: 1189 LQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEG 1248
+ A++R++ GD V + PS+ +
Sbjct: 87 MFNPMYALFRTSP-----------------------GDRVTYTIN-------PSSHCNPN 116
Query: 1249 GQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKIL 1308
+ YF+ +GR++AKA+ D RLL+ F+ +FYK +LG + D+ D F + L
Sbjct: 117 H-----LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 171
Query: 1309 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI 1368
L + +D DL F E F + D LKP N+ +
Sbjct: 172 VYL------------LENDVSTLGYDLTFSTEVQE-----FGVCEVRD--LKPNGANILV 212
Query: 1369 N--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELW 1426
N +EY+ LV + I +Q+ AF GF ++ + IFT EL+ L+ G
Sbjct: 213 TEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGL---- 268
Query: 1427 EPAALAEHIKFD---HGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAV 1483
P + +K + H Y + S I + F + F QFVTG ++P G A
Sbjct: 269 -PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAA 327
Query: 1484 LN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMY 1538
L K I R ST D LPS TC N L LP Y + E +
Sbjct: 328 LEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLPAYESFEKLR 371
Query: 1539 KKLVYAISEGQGSFDLS 1555
L+ AI E F L+
Sbjct: 372 HMLLLAIQECSEGFGLA 388
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 99.8 bits (247), Expect = 1e-20, Method: Composition-based stats.
Identities = 85/302 (28%), Positives = 131/302 (43%), Gaps = 54/302 (17%)
Query: 1255 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1314
+ YF +GRV A+ G+LLD F FYK LG ++ L+D D+E+ L+ +
Sbjct: 132 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWI--- 188
Query: 1315 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDIN--NL 1371
+ +D E +DL F C+D G + LKP + + N
Sbjct: 189 ---------LENDPTE--LDLXF--------CIDEENFGQTYQVDLKPNGSEIXVTNENK 229
Query: 1372 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WE 1427
EYI LV+ + +Q AF GF ++ I ++IF +EL+ L CG ++ W
Sbjct: 230 REYIDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENELELLXCGLGDVDVNDWR 289
Query: 1428 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL--- 1484
+H + +GY P I + + +++ QFVTG R+P G A L
Sbjct: 290 -----QHSIYKNGYCPNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFAELYGS 344
Query: 1485 -NPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVY 1543
P+L + + S + LP TC N L LPPY T E + +KL+
Sbjct: 345 NGPQLFTIEQWGSP----------------EKLPRAHTCFNRLDLPPYETFEDLREKLLX 388
Query: 1544 AI 1545
A+
Sbjct: 389 AV 390
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring
The E2 To The Hect Domain
Length = 380
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 55/308 (17%)
Query: 1255 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1314
+ YF +GR+ A+ G +D F+ FYK +LG + L D D + LH
Sbjct: 112 LSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPD-------LH-- 162
Query: 1315 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPG-YPDYILKPGDENVDIN--NL 1371
L + ++ V+D F C++ G + LKP +++ +N N
Sbjct: 163 ----NSLVWILENDITGVLDHTF--------CVEHNAYGEIIQHELKPNGKSIPVNEENK 210
Query: 1372 EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WE 1427
+EY+ L V+ GI Q A + GFN+V L+ F EL+ ++CG ++ W+
Sbjct: 211 KEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWK 270
Query: 1428 PAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA-FCQFVTGAPRLPPGGLAVLN- 1485
+H D IV EF +++RA QFVTG+ R+P G L
Sbjct: 271 VNTRLKHCTPDSN-------IVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQG 323
Query: 1486 ---PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1542
P+L + + ++ ++LP TC N + +PPY + E +Y+KL+
Sbjct: 324 AAGPRLFTIHQ---------------IDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLL 368
Query: 1543 YAISEGQG 1550
AI E G
Sbjct: 369 TAIEETCG 376
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 36/298 (12%)
Query: 1255 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1314
+ YF+ +GRV+ + R LD F A YK++L ++ L D+ DAE
Sbjct: 162 LNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV---------- 211
Query: 1315 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1372
L M ++ + V+DL F A E T+ LKP N+++ N +
Sbjct: 212 ---YNSLNWMLENSIDGVLDLTF-SADDERFGEVVTVD------LKPDGRNIEVTDGNKK 261
Query: 1373 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALA 1432
EY+ L + + Q +AF GFN++ + +F EL+ L+ G E+ +
Sbjct: 262 EYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEI-DIEDWK 320
Query: 1433 EHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVR 1492
+H + GY I + + E+ +Q+ QF TG R+P G L
Sbjct: 321 KHTDY-RGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDL-------- 371
Query: 1493 KHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1550
S P T LP TC N + LP Y + M +KL A+ E G
Sbjct: 372 -QGSDGPRRF---TIEKAGEVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG 425
>pdb|3EYF|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Plus Gb Peptide
pdb|3EYF|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Plus Gb Peptide
pdb|3EYO|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
pdb|3EYO|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody 8f9
Length = 216
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 1377 LVVDATVK-TGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHI 1435
L+ DA+++ TGI + +G + IT L+ P + C +R +W P +
Sbjct: 48 LIFDASIRATGIPARFSGSGSGTDFTLTITRLE---PEDFAVYYCQQRSMWPPVTFGQGT 104
Query: 1436 KFDHGYTAKSPAI 1448
K + T +P++
Sbjct: 105 KLEIKRTVAAPSV 117
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 1513 DDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1552
D LP+ TC + L +P YS+K+I+ +KL+ AI F
Sbjct: 78 DQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 117
>pdb|2YO0|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfi)
pdb|2YO1|A Chain A, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
pdb|2YO1|B Chain B, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
pdb|2YO1|C Chain C, Salmonella Enterica Sada 1049-1304 Fused To Gcn4 Adaptors
(Sadak9-Cfii)
Length = 322
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 483 IGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVL 542
IGSG +AA N + G EAN + + +R + +A + N+ DA +VA M +
Sbjct: 231 IGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGV-NNTDAVNVAQMKQI 289
Query: 543 VQKLQNALSSL 553
K++ LS +
Sbjct: 290 EDKIEEILSKI 300
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 139 AEQIFEIVNLAN-ELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEV 197
AEQ + I++L ++L + + +++ F++G VV +S A + D + + ++V
Sbjct: 135 AEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADV 194
Query: 198 SAREKLLSDQPELLQQFGMDLLPVLIQIYG----SSVNSPVRHKCLSVIGKL 245
L + E LQ+ G ++L +L+Q +G SSVN L I K+
Sbjct: 195 PDHCTLF--RREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKM 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,775,027
Number of Sequences: 62578
Number of extensions: 1410268
Number of successful extensions: 2924
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2878
Number of HSP's gapped (non-prelim): 20
length of query: 1555
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1443
effective length of database: 7,964,601
effective search space: 11492919243
effective search space used: 11492919243
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)