Query 000409
Match_columns 1555
No_of_seqs 439 out of 1584
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0170 E3 ubiquitin protein l 100.0 1E-143 3E-148 1232.0 39.3 618 880-1555 1-621 (621)
2 KOG0168 Putative ubiquitin fus 100.0 3.2E-79 6.9E-84 733.4 35.6 659 1-718 321-1020(1051)
3 COG5021 HUL4 Ubiquitin-protein 100.0 7.4E-77 1.6E-81 750.9 24.9 433 1048-1555 412-872 (872)
4 KOG0941 E3 ubiquitin protein l 100.0 2.5E-74 5.5E-79 698.8 27.8 418 1042-1554 419-849 (850)
5 cd00078 HECTc HECT domain; C-t 100.0 8.2E-74 1.8E-78 684.7 28.1 341 1136-1553 1-352 (352)
6 KOG0942 E3 ubiquitin protein l 100.0 5.3E-74 1.2E-78 695.4 24.2 386 1079-1555 599-1001(1001)
7 smart00119 HECTc Domain Homolo 100.0 5.6E-72 1.2E-76 662.3 27.1 320 1159-1555 7-336 (336)
8 KOG4427 E3 ubiquitin protein l 100.0 1.1E-65 2.5E-70 605.6 25.2 396 1080-1555 670-1096(1096)
9 KOG0939 E3 ubiquitin-protein l 100.0 1.1E-65 2.4E-70 612.2 21.8 381 1064-1554 323-719 (720)
10 PF00632 HECT: HECT-domain (ub 100.0 1.2E-60 2.7E-65 564.6 18.8 308 1183-1555 1-317 (317)
11 KOG0940 Ubiquitin protein liga 100.0 2.3E-39 5.1E-44 378.9 12.9 329 1134-1546 15-358 (358)
12 KOG0943 Predicted ubiquitin-pr 100.0 3.6E-37 7.7E-42 370.7 22.8 258 1252-1549 2739-3011(3015)
13 KOG0166 Karyopherin (importin) 99.7 4E-16 8.7E-21 188.5 18.5 236 1-318 222-470 (514)
14 COG5064 SRP1 Karyopherin (impo 99.6 2E-14 4.3E-19 161.4 16.4 235 1-317 228-479 (526)
15 KOG0168 Putative ubiquitin fus 98.7 1.8E-08 4E-13 125.0 8.6 156 462-626 860-1023(1051)
16 PLN03200 cellulose synthase-in 98.0 0.00074 1.6E-08 94.8 25.1 228 2-318 371-622 (2102)
17 KOG0166 Karyopherin (importin) 97.7 0.0024 5.2E-08 79.1 20.6 219 14-314 193-416 (514)
18 PLN03200 cellulose synthase-in 97.2 0.017 3.6E-07 81.9 22.0 281 15-317 446-747 (2102)
19 cd00020 ARM Armadillo/beta-cat 96.8 0.0083 1.8E-07 60.0 10.2 95 16-122 8-102 (120)
20 PF10508 Proteasom_PSMB: Prote 96.7 0.14 3.1E-06 65.3 22.9 214 18-317 41-255 (503)
21 PTZ00429 beta-adaptin; Provisi 96.4 0.14 3.1E-06 67.7 20.5 203 10-302 135-337 (746)
22 cd00020 ARM Armadillo/beta-cat 96.3 0.0068 1.5E-07 60.6 5.8 80 6-97 39-119 (120)
23 PF10508 Proteasom_PSMB: Prote 95.4 1.2 2.7E-05 56.9 22.2 178 13-273 75-254 (503)
24 KOG1062 Vesicle coat complex A 95.4 1.1 2.4E-05 58.0 20.7 210 9-254 136-386 (866)
25 PF04826 Arm_2: Armadillo-like 95.2 2.3 5E-05 49.5 21.8 218 15-317 12-245 (254)
26 PF01602 Adaptin_N: Adaptin N 94.7 0.87 1.9E-05 58.2 18.3 191 9-293 108-298 (526)
27 KOG1058 Vesicle coat complex C 94.6 3.9 8.5E-05 52.8 22.3 210 7-260 126-359 (948)
28 PF01602 Adaptin_N: Adaptin N 94.1 1.1 2.3E-05 57.5 16.9 188 10-292 146-334 (526)
29 PF12460 MMS19_C: RNAPII trans 91.1 11 0.00024 47.1 19.7 90 210-302 316-405 (415)
30 PF03224 V-ATPase_H_N: V-ATPas 90.5 14 0.0003 44.4 19.1 226 15-316 59-294 (312)
31 PF00514 Arm: Armadillo/beta-c 90.3 0.37 7.9E-06 39.7 3.8 30 15-44 12-41 (41)
32 PF03224 V-ATPase_H_N: V-ATPas 90.1 14 0.00029 44.5 18.5 165 16-252 106-274 (312)
33 PTZ00429 beta-adaptin; Provisi 89.5 23 0.0005 47.5 21.3 64 226-297 376-439 (746)
34 PF05804 KAP: Kinesin-associat 89.1 26 0.00057 46.6 21.1 194 41-309 472-666 (708)
35 COG5064 SRP1 Karyopherin (impo 87.5 0.46 1E-05 55.6 3.4 102 14-124 326-427 (526)
36 KOG2160 Armadillo/beta-catenin 87.1 18 0.00039 43.6 16.3 166 9-249 119-284 (342)
37 KOG2160 Armadillo/beta-catenin 86.6 65 0.0014 39.1 20.5 213 24-315 92-309 (342)
38 PF05804 KAP: Kinesin-associat 86.6 21 0.00046 47.4 18.1 240 14-316 330-587 (708)
39 KOG2171 Karyopherin (importin) 85.3 1.5E+02 0.0033 41.0 24.8 271 7-315 194-504 (1075)
40 KOG1059 Vesicle coat complex A 84.8 15 0.00033 47.5 14.8 145 11-245 140-284 (877)
41 PF05536 Neurochondrin: Neuroc 84.3 20 0.00044 46.5 16.3 170 11-253 94-267 (543)
42 smart00185 ARM Armadillo/beta- 80.6 1.7 3.6E-05 35.0 3.0 28 16-43 13-40 (41)
43 KOG1048 Neural adherens juncti 79.8 5 0.00011 52.3 8.3 101 14-122 565-665 (717)
44 PF12348 CLASP_N: CLASP N term 79.6 44 0.00096 37.8 15.3 79 10-101 48-126 (228)
45 PF04826 Arm_2: Armadillo-like 78.9 26 0.00055 41.1 13.1 170 11-263 48-221 (254)
46 cd00256 VATPase_H VATPase_H, r 76.0 2.1E+02 0.0045 36.2 20.4 109 16-148 102-210 (429)
47 KOG1059 Vesicle coat complex A 74.8 40 0.00087 44.0 13.8 196 11-260 177-375 (877)
48 KOG4413 26S proteasome regulat 73.9 1.1E+02 0.0025 36.5 16.1 83 231-316 184-266 (524)
49 PF13513 HEAT_EZ: HEAT-like re 73.7 2.4 5.3E-05 36.9 2.3 34 9-42 22-55 (55)
50 PF02985 HEAT: HEAT repeat; I 72.5 6.2 0.00013 30.5 4.0 30 16-45 1-30 (31)
51 PF12755 Vac14_Fab1_bd: Vacuol 70.6 15 0.00032 36.6 7.2 62 8-73 20-81 (97)
52 KOG2759 Vacuolar H+-ATPase V1 68.5 66 0.0014 39.8 13.2 237 15-291 179-438 (442)
53 PF13513 HEAT_EZ: HEAT-like re 67.8 12 0.00026 32.6 5.3 42 203-245 14-55 (55)
54 KOG4199 Uncharacterized conser 67.0 3E+02 0.0064 33.5 20.3 222 24-318 116-341 (461)
55 KOG2956 CLIP-associating prote 66.7 1E+02 0.0022 38.8 14.3 37 209-246 440-476 (516)
56 PF00514 Arm: Armadillo/beta-c 65.6 13 0.00029 30.4 4.9 41 49-98 1-41 (41)
57 PF02985 HEAT: HEAT repeat; I 62.9 13 0.00029 28.7 4.1 30 218-248 1-30 (31)
58 PF09324 DUF1981: Domain of un 62.8 37 0.00079 33.0 8.1 70 214-288 14-85 (86)
59 PF12755 Vac14_Fab1_bd: Vacuol 62.5 32 0.0007 34.2 7.8 79 207-290 17-95 (97)
60 KOG1241 Karyopherin (importin) 61.4 32 0.00068 45.1 9.2 88 211-301 590-678 (859)
61 PF08167 RIX1: rRNA processing 61.0 42 0.0009 36.6 9.1 98 205-303 54-155 (165)
62 KOG2137 Protein kinase [Signal 60.9 1.2E+02 0.0025 40.2 14.0 74 216-295 427-500 (700)
63 KOG1293 Proteins containing ar 56.7 39 0.00083 43.7 8.8 82 223-305 466-547 (678)
64 KOG1993 Nuclear transport rece 56.1 2.2E+02 0.0047 38.1 15.1 242 17-303 528-824 (978)
65 cd03568 VHS_STAM VHS domain fa 53.4 44 0.00096 35.7 7.5 105 2-121 25-129 (144)
66 PF13646 HEAT_2: HEAT repeats; 52.4 24 0.00052 33.3 4.9 57 17-96 1-58 (88)
67 PF11701 UNC45-central: Myosin 51.4 2.5E+02 0.0054 30.4 13.0 146 20-245 9-157 (157)
68 KOG4199 Uncharacterized conser 51.2 1.3E+02 0.0029 36.3 11.3 100 15-123 189-295 (461)
69 KOG2038 CAATT-binding transcri 50.5 5.3E+02 0.012 34.6 17.1 208 50-318 166-391 (988)
70 KOG0170 E3 ubiquitin protein l 49.3 10 0.00022 47.1 2.2 65 1046-1110 128-192 (621)
71 KOG1824 TATA-binding protein-i 48.7 2.1E+02 0.0046 38.9 13.6 43 14-58 46-88 (1233)
72 PF05536 Neurochondrin: Neuroc 48.6 2.3E+02 0.0049 37.1 14.2 163 60-294 98-264 (543)
73 KOG2171 Karyopherin (importin) 47.0 4E+02 0.0087 37.2 16.1 101 212-315 154-257 (1075)
74 cd03567 VHS_GGA VHS domain fam 46.0 39 0.00085 35.9 5.7 45 272-316 48-92 (139)
75 PF12348 CLASP_N: CLASP N term 44.2 1E+02 0.0022 34.9 9.2 95 211-315 88-187 (228)
76 cd00256 VATPase_H VATPase_H, r 43.3 8E+02 0.017 31.2 20.7 96 219-317 187-289 (429)
77 cd03568 VHS_STAM VHS domain fa 43.3 46 0.001 35.5 5.8 43 274-316 49-91 (144)
78 KOG1242 Protein containing ada 42.4 6.9E+02 0.015 32.7 16.5 40 206-246 404-443 (569)
79 PF13646 HEAT_2: HEAT repeats; 41.0 64 0.0014 30.3 5.9 44 14-71 30-73 (88)
80 KOG1824 TATA-binding protein-i 38.7 9E+02 0.019 33.5 16.8 92 204-303 1035-1145(1233)
81 smart00288 VHS Domain present 38.4 66 0.0014 33.8 5.9 45 272-316 47-91 (133)
82 PF10165 Ric8: Guanine nucleot 37.6 9.7E+02 0.021 30.5 18.3 120 25-152 42-166 (446)
83 PF12717 Cnd1: non-SMC mitotic 37.5 1.2E+02 0.0026 33.3 8.1 84 205-301 17-103 (178)
84 cd00197 VHS_ENTH_ANTH VHS, ENT 37.1 75 0.0016 32.2 6.0 49 265-313 40-88 (115)
85 cd03569 VHS_Hrs_Vps27p VHS dom 36.2 57 0.0012 34.8 5.1 44 273-316 52-95 (142)
86 KOG1248 Uncharacterized conser 35.3 1.5E+03 0.033 32.1 18.8 246 4-291 507-767 (1176)
87 PF00790 VHS: VHS domain; Int 34.1 1.9E+02 0.0041 30.6 8.6 46 271-316 51-96 (140)
88 PF12231 Rif1_N: Rap1-interact 33.9 1E+03 0.022 29.5 18.3 163 11-250 31-207 (372)
89 KOG4413 26S proteasome regulat 33.8 1.7E+02 0.0037 35.1 8.6 95 15-122 128-224 (524)
90 smart00638 LPD_N Lipoprotein N 33.6 4.9E+02 0.011 34.0 14.2 89 5-98 387-475 (574)
91 PF12830 Nipped-B_C: Sister ch 32.8 2.2E+02 0.0049 31.6 9.4 94 208-314 3-96 (187)
92 COG5096 Vesicle coat complex, 32.3 1.5E+03 0.032 31.0 18.3 56 11-72 123-178 (757)
93 cd03567 VHS_GGA VHS domain fam 31.8 1.5E+02 0.0033 31.6 7.3 83 11-98 34-116 (139)
94 KOG4500 Rho/Rac GTPase guanine 31.6 1.9E+02 0.0042 36.0 8.9 103 13-120 85-187 (604)
95 KOG1077 Vesicle coat complex A 31.3 8.1E+02 0.018 32.7 14.5 232 8-315 180-433 (938)
96 KOG1061 Vesicle coat complex A 30.8 4E+02 0.0086 35.7 12.1 66 224-297 356-421 (734)
97 PF04388 Hamartin: Hamartin pr 30.7 3.8E+02 0.0081 36.0 12.3 98 37-158 39-144 (668)
98 PF12460 MMS19_C: RNAPII trans 30.5 1E+03 0.022 29.9 15.7 93 17-122 1-101 (415)
99 KOG1062 Vesicle coat complex A 30.5 2.8E+02 0.006 37.2 10.5 94 215-317 140-235 (866)
100 PRK09687 putative lyase; Provi 30.5 9.9E+02 0.021 28.4 20.1 80 217-304 192-275 (280)
101 KOG1967 DNA repair/transcripti 29.9 1.1E+02 0.0024 41.2 7.0 105 209-315 859-1005(1030)
102 KOG4224 Armadillo repeat prote 29.8 2E+02 0.0043 35.1 8.4 93 15-121 208-302 (550)
103 PF06025 DUF913: Domain of Unk 29.8 2.4E+02 0.0053 35.1 9.8 88 28-121 73-161 (379)
104 PF11841 DUF3361: Domain of un 28.9 7.1E+02 0.015 27.3 11.8 114 16-155 12-132 (160)
105 cd03569 VHS_Hrs_Vps27p VHS dom 28.7 3.1E+02 0.0066 29.3 9.1 76 12-97 38-113 (142)
106 KOG1789 Endocytosis protein RM 27.1 4.3E+02 0.0094 36.5 11.3 84 25-123 1782-1865(2235)
107 KOG2199 Signal transducing ada 27.0 98 0.0021 37.9 5.4 65 2-69 33-97 (462)
108 PF00790 VHS: VHS domain; Int 26.7 1.2E+02 0.0026 32.1 5.6 61 10-72 37-97 (140)
109 smart00288 VHS Domain present 26.4 2.4E+02 0.0053 29.6 7.8 60 11-72 33-92 (133)
110 PF03378 CAS_CSE1: CAS/CSE pro 26.1 1.4E+03 0.031 28.9 18.4 279 11-314 22-345 (435)
111 KOG2274 Predicted importin 9 [ 25.9 1E+03 0.022 32.7 14.4 228 11-319 486-722 (1005)
112 PF11841 DUF3361: Domain of un 25.8 4.8E+02 0.01 28.6 9.9 79 213-296 58-136 (160)
113 COG5215 KAP95 Karyopherin (imp 25.4 1.1E+03 0.024 30.9 13.8 93 219-316 536-628 (858)
114 KOG1087 Cytosolic sorting prot 25.3 97 0.0021 39.4 5.3 44 272-315 48-91 (470)
115 PF11816 DUF3337: Domain of un 24.9 84 0.0018 38.3 4.6 26 878-904 290-315 (331)
116 PF10363 DUF2435: Protein of u 24.6 2.5E+02 0.0054 27.8 6.9 72 228-303 13-84 (92)
117 cd03561 VHS VHS domain family; 24.6 1.1E+02 0.0025 32.0 4.9 43 274-316 49-91 (133)
118 PF10363 DUF2435: Protein of u 23.6 4.7E+02 0.01 25.9 8.6 73 22-109 10-84 (92)
119 cd03561 VHS VHS domain family; 23.1 4.6E+02 0.01 27.4 9.2 79 12-98 34-112 (133)
120 PF08167 RIX1: rRNA processing 23.1 2E+02 0.0043 31.4 6.6 49 12-60 64-113 (165)
121 COG5215 KAP95 Karyopherin (imp 22.6 7.1E+02 0.015 32.4 11.6 81 217-300 597-677 (858)
122 KOG1242 Protein containing ada 21.7 4E+02 0.0087 34.7 9.6 192 14-260 133-337 (569)
123 PF06012 DUF908: Domain of Unk 21.4 2.9E+02 0.0062 33.7 8.2 72 28-106 232-305 (329)
124 cd03565 VHS_Tom1 VHS domain fa 20.8 3.5E+02 0.0075 28.9 7.7 88 1-97 25-114 (141)
125 smart00185 ARM Armadillo/beta- 20.6 2.2E+02 0.0047 22.5 4.9 29 218-247 13-41 (41)
126 KOG4224 Armadillo repeat prote 20.6 2E+02 0.0044 35.1 6.2 96 15-122 292-387 (550)
127 PF11701 UNC45-central: Myosin 20.1 2.5E+02 0.0054 30.4 6.6 81 229-315 16-96 (157)
128 PF11081 DUF2890: Protein of u 20.0 1.7E+02 0.0036 32.7 5.1 56 205-260 115-175 (187)
No 1
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-143 Score=1232.02 Aligned_cols=618 Identities=55% Similarity=0.867 Sum_probs=536.4
Q ss_pred eEEEEECCccCCCCCcHHHHHHHhhhcccccccccCCCCccCCCCCCCcccceEEEEEecCCccccccCCCCCCCCCCCC
Q 000409 880 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS 959 (1555)
Q Consensus 880 ~l~f~~~~~~l~~~~Ti~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~ 959 (1555)
+|.|++.|+.+++++|+||||+|+....++++ . +.+. .... |+.+|+|+|++-+......++++.+...+..+
T Consensus 1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e~----~-s~s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~ 73 (621)
T KOG0170|consen 1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDED----E-SNPL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP 73 (621)
T ss_pred CceEEeccccccccchHHHHHHHHhhhccccc----c-CCcc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence 47999999999999999999999988766431 1 1121 2233 99999999997554433333333221111222
Q ss_pred CCCCCCCCCCC-ccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhcccccccccCccccccccc
Q 000409 960 SKSGSASNSNS-DSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS 1038 (1555)
Q Consensus 960 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lL~~l~~ln~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1038 (1555)
.+.... +.+. +.+|..+.+...+ ...+..++.+++++|+|+ ....+|. .++++.
T Consensus 74 ~~~~~~-n~~~~~~~h~~~~~~~~~-----~~~e~~~~~~~~i~l~rv--~~~~~~~-----------------~l~d~~ 128 (621)
T KOG0170|consen 74 TKTSPT-NKKHDELSHDPSVSNPLL-----VPLENINPSLDVILLLRV--AIEGYWY-----------------YLDDLA 128 (621)
T ss_pred ccccCc-CCchhhccCChhhccccc-----cchhhcCchHHHHHHHhh--cccchhh-----------------hhhhhh
Confidence 222111 1111 2233222111111 133444578888888888 2222232 234444
Q ss_pred CCCCCCCchhhhcccchHHHHHHHHHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhhcCC
Q 000409 1039 GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAD 1118 (1555)
Q Consensus 1039 ~~~~~~~~~~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~ 1118 (1555)
.....+|.++|||+|||+|++||++||+++|+|.+|.||.+|++.|||||||+||++|||+|+||++|++++||+.++.+
T Consensus 129 ~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~ 208 (621)
T KOG0170|consen 129 MCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGS 208 (621)
T ss_pred hhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCC
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCCCCcchhhhcccccccccccCchhHHHHHHHHHhhhcCCCceEEEEEcCccccCCcchHHHHHHHHHHHhccCCCCcc
Q 000409 1119 GHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1198 (1555)
Q Consensus 1119 ~~~~~~~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~~~k~~LeV~F~gE~G~g~GptrEFyslvs~El~~~~l~lf~ 1198 (1555)
.+++.++...++||++|+|++|+|++||++|+++|++|++++.+|||||++|+|+|+|||+|||++|++||++++++|||
T Consensus 209 ~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR 288 (621)
T KOG0170|consen 209 KDGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWR 288 (621)
T ss_pred CCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccc
Confidence 66666777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCccccc
Q 000409 1199 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1278 (1555)
Q Consensus 1199 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~ 1278 (1555)
++.- .+.+ +++ ..+..||..+.||||.||++....+++ .+++++|++||+||||||+|+|++|+|
T Consensus 289 ~~s~----s~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se~---~kvi~~F~~LG~~vAkal~D~Rildlp 353 (621)
T KOG0170|consen 289 CNSV----SYRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSEN---EKVIELFRLLGTFVAKALQDGRILDLP 353 (621)
T ss_pred cCce----eecc-------CCC-CCCcchhhhccccCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHhcCceEeee
Confidence 9753 1221 122 456789999999999999997655543 689999999999999999999999999
Q ss_pred CCHHHHHHHhCCCCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccCCCCcee
Q 000409 1279 FSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI 1358 (1555)
Q Consensus 1279 fs~~f~K~Llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlpg~~~iE 1358 (1555)
|+++|||+++|++++..|+..|||+++++|.+|+..+.+|+.++...|+...+..+|++.||.||||+|+||+||+++||
T Consensus 354 ls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ie 433 (621)
T KOG0170|consen 354 LSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIE 433 (621)
T ss_pred ccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCee
Confidence 99999999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred cCCCCC--cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcE
Q 000409 1359 LKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIK 1436 (1555)
Q Consensus 1359 L~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~ 1436 (1555)
|+|||. +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||.+++|+.++|++|++
T Consensus 434 L~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~ 513 (621)
T KOG0170|consen 434 LIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIK 513 (621)
T ss_pred eccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcc
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 000409 1437 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDL 1516 (1555)
Q Consensus 1437 ~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~L 1516 (1555)
+|||||++||.|+.|++||++|+.+|||.||||||||||||+|||++|+||||||||+.+. ++++|++|
T Consensus 514 ~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~-----------~~t~Dd~L 582 (621)
T KOG0170|consen 514 ADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAED-----------SETPDDYL 582 (621)
T ss_pred cccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCC-----------CCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876 58899999
Q ss_pred cEEecccCcccCCCCCCHHHHHHHHHHHHHhCCccccCC
Q 000409 1517 PSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555 (1555)
Q Consensus 1517 Psa~TC~n~LkLP~YsS~evLreKL~~AI~eg~g~F~LS 1555 (1555)
||||||+||||||+|||+|+||+||.+||+||||+||||
T Consensus 583 PSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 583 PSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred chHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999998
No 2
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-79 Score=733.39 Aligned_cols=659 Identities=40% Similarity=0.511 Sum_probs=473.8
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcc
Q 000409 1 MCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQAS 80 (1555)
Q Consensus 1 ~Cr~i~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ 80 (1555)
||.+|++|+|++|+|++|+|+++|+|+|+|+||++|.|++||+|+|.|.|++||+||++|||++++|||+++ +++
T Consensus 321 ~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-----~t~ 395 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-----PTI 395 (1051)
T ss_pred HHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-----ccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999775 778
Q ss_pred cCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCC-C
Q 000409 81 LSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQ-G 159 (1555)
Q Consensus 81 ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~-~ 159 (1555)
|+..+|+.+||||+.||++||.+.++|++.||+++|.+||+|++.+++.++.+++.|.+++++|.++||++|||++|. |
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~ 475 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEG 475 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccc
Confidence 999999999999999999999999999999999999999999999888888888999999999999999999999999 5
Q ss_pred CccCC---CCc--------cccc---cCCc------------ccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHH
Q 000409 160 TISLP---SSS--------NMFV---KGPV------------VRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQ 213 (1555)
Q Consensus 160 ~~~~~---~~~--------~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~ 213 (1555)
+|.+. .|. .|.. +|.. +.++....+++++ .....++|+.+++++||++++
T Consensus 476 i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~----dkl~~~~r~~~l~nqpel~q~ 551 (1051)
T KOG0168|consen 476 IFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ----DKLNGSAREGLLKNQPELLQS 551 (1051)
T ss_pred eeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh----hhcCCchhhhhhhcCHHHHHH
Confidence 65431 010 0111 1111 1111111112211 122348999999999999999
Q ss_pred HHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhC
Q 000409 214 FGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKL 293 (1555)
Q Consensus 214 f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Kl 293 (1555)
|+++|||||||||+|++|+.||||||+||+|||||+++++|+++|++.+++||||+||+++|+++|++|||++|+||+|+
T Consensus 552 F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl 631 (1051)
T KOG0168|consen 552 FGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL 631 (1051)
T ss_pred HHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCcCCCCCCccCCCCC
Q 000409 294 PGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSP 373 (1555)
Q Consensus 294 pd~f~~~F~REGV~~~I~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~d~~~~d~~~~~~s~~~~s~ 373 (1555)
||+|..+|+||||||+|++|+...+.....++ +++. ...+-....+.++++-.+-++...++. +.+
T Consensus 632 pd~F~~~F~REGV~~~v~~L~~~~~~~~~~pd-----k~~n-~~gS~~s~~~~~~ss~~~~~~~~see~--------~~p 697 (1051)
T KOG0168|consen 632 PDTFSPSFRREGVFHAVKQLSVDSNPIDANPD-----KANN-ENGSADSEEGDSSSSITECDEHQSEEL--------GYP 697 (1051)
T ss_pred HHHhhhhHhhhhHHHHHHHHhccCCccccCCC-----cccC-CCCccccCCCccccccccccccchhcc--------CCc
Confidence 99999999999999999999986554332221 1111 011111112222211111111000111 111
Q ss_pred -CCCCccCCCCch-------hhhhHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHhhcccchhhhcccCcccc
Q 000409 374 -PSSVEIPTVNSN-------LRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKAS 445 (1555)
Q Consensus 374 -~~~~~~p~~~~~-------~r~~v~~~A~~~~~~~f~~~~~~~~~~~~~~l~~L~~l~~~L~~~~~~~~~~~~~~~~~~ 445 (1555)
..+...|...++ .|..+..+||.|..+||+... ..+.++.+..+++++..+.......+.+..|+
T Consensus 698 slt~~~~~~s~~~pk~s~~l~R~~~~~~ak~~~p~~~p~~~---~~~~~d~~~~~knl~s~~s~~l~~~np~~~gk---- 770 (1051)
T KOG0168|consen 698 SLTHSEQPDSVKPPKISDHLLRTRSPKRAKNFGPKYFPSRL---DQGVTDQLANLKNLHSILSSFLASLNPATWGK---- 770 (1051)
T ss_pred ccccccCCCccCCchhHHHHHHhhhhhhhhccCCCCCCchh---hhhhhHhhhhhhhhcchhhhhhcccCCCCCCc----
Confidence 111122222222 234455567778888987633 45678899999999988876655443333332
Q ss_pred CCcccccchhhHHH--HHHHHHHHHHhccCCCcccceeccccchHHHHHHhhccCccch--hhhHHHHHHHHHHHHHHHH
Q 000409 446 GSRLADISATKEEY--LIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKER--MSEANMLKLRQQALKRFKS 521 (1555)
Q Consensus 446 ~~~~~d~~~~~ee~--~~~~l~~l~~~L~~~~~ISsFEl~~SGLV~sLl~~Ls~~~~~~--~~~~~~~~~r~~~~~~f~~ 521 (1555)
.+++ |.++|..+...+++++.||+|||..+|++++|.+|++++.+.+ .........+++.++.|++
T Consensus 771 ----------~e~~~f~g~~~s~~~~~l~g~~~vS~~~l~~~~~~~sisnr~s~~~~sre~~~k~~~~~~e~e~~r~l~v 840 (1051)
T KOG0168|consen 771 ----------TEEQPFWGNIWSVLKERLAGDFDVSGFELTEAGVADSISNRESSGTWSREQAAKLVLRYFEQEILRFLNV 840 (1051)
T ss_pred ----------ccccccccchhhhhhhhhcCCcccchhhhhHHHHHHHHHhhhhcchhhHHHHHHHhhcchhhhHHHHHHH
Confidence 2333 8899999999999999999999999999999999999987543 1111112234444554566
Q ss_pred hHhhccCCCCCCCCCChHHHHHHHHHHHhhhcccccEEEccCCCCCCCCCCCCcccccccCc-eEEE-EEecCCCCCcCC
Q 000409 522 FIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQP-FKLR-LCRAQGDKSLRD 599 (1555)
Q Consensus 522 F~~~~~~~~~~~~~~~pls~LV~KLq~aLsr~E~FpV~~~~~~~~~~~~~~~ss~ls~Lakq-lKlr-L~r~~d~~~l~~ 599 (1555)
|.+++..-..+.+...+...++.|||++|+.+|+||+++.|....-++....++|...++.+ +|+| +-.......+.+
T Consensus 841 l~~v~t~l~~~ng~v~~~~~~i~~lqssLs~~e~~p~vlsh~~~~kn~~~~lsSg~t~~s~~~i~~~~fl~~f~~~ple~ 920 (1051)
T KOG0168|consen 841 LQEVLTRLLWLNGSVVDCGLLIQKLQSSLSSLEKFPFVLSHSGSKKNILAYLSSGETILSVPCIRLRTFLHVFLRLPLEP 920 (1051)
T ss_pred HHHHHHHHHhhcCccCcHHHHHHHHHHHHHhhhcCceEecCchhhhhhhhhcccCcchhhhHHHHHHHHHHHHhcCCchh
Confidence 66554332223346678999999999999999999999998665434445677776666443 4443 111233445678
Q ss_pred CCCCeEEecccccHHHHHHhhhhhhccccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCCC
Q 000409 600 YSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDG 679 (1555)
Q Consensus 600 ~~~~~VsIhpiATf~aLedyL~pRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1555)
|.-..|.|.|++...+..+|.|+.+........+.. ....+..++.|++.++++--+....
T Consensus 921 ~~~~~~~v~~l~~~~~~a~~~~~~~cl~~m~~~~~k-------------------~~d~p~~~~~r~~~~s~~~~n~~dl 981 (1051)
T KOG0168|consen 921 MLQPNVQVPPLTSSPAEADVEKENNCLDQMEQVPVK-------------------VHDFPAGTGGRGSQFSTSFFNTHDL 981 (1051)
T ss_pred hccccccCCCccccchhhhhhcccCCcchhhcCCCc-------------------cccccCcCCcccchhhhheeecccc
Confidence 999999999999999999999998886332211110 0000111222333332222223343
Q ss_pred CCCCCCcccCCCCcCCCchhhhhhhhhhcCCchhhhHHH
Q 000409 680 MKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAAR 718 (1555)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1555)
+...+.+....+..+.||....-....+..|+..|...|
T Consensus 982 k~~~~~h~~~~~~kq~kG~~~~iep~~~~~g~q~~~~~~ 1020 (1051)
T KOG0168|consen 982 KCLLQRHPTCKNCKQLKGGNVKIEPAAEVQGIQRRSVVR 1020 (1051)
T ss_pred cCccccCccccchhhhcCCCcccChhhhchhhHHHHHHh
Confidence 344444555556666666545555555556766665554
No 3
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-77 Score=750.88 Aligned_cols=433 Identities=30% Similarity=0.443 Sum_probs=360.7
Q ss_pred hhhcccchHHHHHHHHHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhhcCCCCCCC----
Q 000409 1048 EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSV---- 1123 (1555)
Q Consensus 1048 ~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~---- 1123 (1555)
.++......++.++.-+++.+++.+.+.|. ....|+++++++|...++...|...|...-+............
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~r~~~~~~~~~~~h~k~~~~~~~~~~g~~~~~~~~~ 488 (872)
T COG5021 412 STYEDLRREQLGRESDESFYVASNVQQQRA---SREGPLLSGWKTRLNNLYRFYFVEHRKKTLTKNDSRLGSFISLNKLD 488 (872)
T ss_pred hhhhchhhhhhhhhhccchhhhcccccccc---cccccccchHHHHhhhhheeeehhcccceeeecCCCCchhhhhchhH
Confidence 345555667888888889999999999998 6779999999999999998887765543322111100000000
Q ss_pred ------cc-hhh-----hc--ccccccccccCchhHHHHHHHHHhhhcC--CCceEEEEEcCccccCC-cchHHHHHHHH
Q 000409 1124 ------NE-REI-----RV--GRLERQKVRVSRNRILDSAAKVMEMYSS--QKAVLEVEYFGEVGTGL-GPTLEFYTLLS 1186 (1555)
Q Consensus 1124 ------~~-~~~-----~~--grl~r~kv~V~R~~IlesA~~~l~~~~~--~k~~LeV~F~gE~G~g~-GptrEFyslvs 1186 (1555)
.. +.+ +. .--+..+++|+|++|++|++..+...+. .++.|+|+|.||+|+|+ |.|||||.+++
T Consensus 489 ~~r~~~~~r~~l~~~~~~~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~EeGiD~GGltrE~~~lLs 568 (872)
T COG5021 489 IRRIKEDKRRKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGEEGIDAGGLTREWLFLLS 568 (872)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCcccccCCccchHHHHHHh
Confidence 00 000 00 0124578999999999999998877663 45679999999999999 69999999999
Q ss_pred HHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchh
Q 000409 1187 RDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMA 1266 (1555)
Q Consensus 1187 ~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~ia 1266 (1555)
+++++|+++||.+... +.| .++|+|.+.. + ++++++|+|+|++||
T Consensus 569 ~~~Fnp~y~LF~y~t~----------------------d~~-----~~~~n~~s~~-----n---pe~L~yf~fiGrvIG 613 (872)
T COG5021 569 KEMFNPDYGLFEYITE----------------------DLY-----TLPINPLSSI-----N---PEHLSYFKFLGRVIG 613 (872)
T ss_pred HHhcCCcccceeeecc----------------------ccc-----ccCcCccccC-----C---HHHHHHHHHHHHHHH
Confidence 9999999999988754 111 3555555431 1 589999999999999
Q ss_pred hheecCCcccccCCHHHHHHHhCCCCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccc
Q 000409 1267 KALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLC 1346 (1555)
Q Consensus 1267 kAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~ 1346 (1555)
+||+|+++||++|+++|||+||+.+++++|+..+||++|++|.||+++ +.+. ..++
T Consensus 614 kaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~-----------------------~~d~-~~l~ 669 (872)
T COG5021 614 KAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNN-----------------------DIDE-TILD 669 (872)
T ss_pred HHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcC-----------------------CCCc-ceee
Confidence 999999999999999999999999999999999999999999999885 1111 1567
Q ss_pred cccccC----C-CCceecCCCCC--cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhh
Q 000409 1347 LDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLL 1419 (1555)
Q Consensus 1347 L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~li 1419 (1555)
|+|++. | ...|||||||+ .||.+|+.|||++|++|+|+++|++|++||..||++|||..+|.+|+++||+.||
T Consensus 670 l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI 749 (872)
T COG5021 670 LTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLI 749 (872)
T ss_pred eeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHH
Confidence 777764 3 35799999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCC
Q 000409 1420 CGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAP 1499 (1555)
Q Consensus 1420 cG~~~~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~ 1499 (1555)
||.++++|+++|+++|.| |||++++|+|+|||++|++|+.|+|++|||||||++|+|++||+.|+|+.+|++.....+
T Consensus 750 ~G~~e~iDidd~K~~T~Y-~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~- 827 (872)
T COG5021 750 GGIPEDIDIDDWKSNTAY-HGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKG- 827 (872)
T ss_pred CCCCccccHHHHhhcccc-cccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecC-
Confidence 999986799999999999 899999999999999999999999999999999999999999999999544444333221
Q ss_pred CCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCCccccCC
Q 000409 1500 NTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555 (1555)
Q Consensus 1500 ~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evLreKL~~AI~eg~g~F~LS 1555 (1555)
..++++||+||||||+|+||+|+|||+||+||++||+||.| |+|+
T Consensus 828 ----------g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~G-Fg~~ 872 (872)
T COG5021 828 ----------GTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAG-FGLL 872 (872)
T ss_pred ----------CCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccC-cCcC
Confidence 23688999999999999999999999999999999999997 8874
No 4
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-74 Score=698.84 Aligned_cols=418 Identities=33% Similarity=0.541 Sum_probs=349.5
Q ss_pred CCCCchhhhcccchHHHHHHHHHHHHH-hcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhhcCCCC
Q 000409 1042 VRVPYEEFINSKLTPKLARQIQDALAL-CSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGH 1120 (1555)
Q Consensus 1042 ~~~~~~~F~~~klt~Kl~rql~~~l~~-~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~ 1120 (1555)
..||.+.|++.-|..-++-+.+-..-. .......|| +|||||+--+|..++|..+ ++++...+..+
T Consensus 419 ~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc-----~ypFIL~~~aK~~lL~yD~--------rlrM~~~~~~a 485 (850)
T KOG0941|consen 419 GLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFC-----NYPFILNAVAKIELLQYDA--------RLRMESERRKA 485 (850)
T ss_pred CCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceee-----cCCeecccHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 568888888888887776433322111 111245677 7999999999999999764 22221110000
Q ss_pred CCCc-chhhhcccccccccccCchhHHHHHHHHHhhhc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCC
Q 000409 1121 GSVN-EREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAM 1196 (1555)
Q Consensus 1121 ~~~~-~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~--~~k~~LeV~F~gE~G~g~-GptrEFyslvs~El~~~~l~l 1196 (1555)
.-.. ....+--.-++.+++|||++|++||+++|+.+. +.+++|+|+|.||+|+|+ |+++|||.+|.+|+++|++||
T Consensus 486 ~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~Gm 565 (850)
T KOG0941|consen 486 FLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGM 565 (850)
T ss_pred HHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCCcccccCchHHHHHHHHHHHHcCccccC
Confidence 0000 000000023688999999999999999999887 469999999999999999 699999999999999999999
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCccc
Q 000409 1197 WRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLD 1276 (1555)
Q Consensus 1197 f~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ld 1276 (1555)
|.+... ..++ ||+. .+. ....+|.++|++||.|||++.++|
T Consensus 566 F~~~e~----------------------s~~~-----WF~~-~~~-----------~~~~~y~liGil~GLAIyN~~ild 606 (850)
T KOG0941|consen 566 FTYDEE----------------------SSLL-----WFNP-SPF-----------EEEKQYHLIGILCGLAIYNNTILD 606 (850)
T ss_pred eecccc----------------------ccee-----eecC-CCC-----------CccceeeehhHHHHHHHhccceec
Confidence 999865 2334 3422 111 123489999999999999999999
Q ss_pred ccCCHHHHHHHhCCCCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccc-cccccccC---
Q 000409 1277 LPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP--- 1352 (1555)
Q Consensus 1277 l~fs~~f~K~Llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ied-L~L~Ftlp--- 1352 (1555)
+|||.+|||+|++.+++++||.++.|.++++|+.|+++ .|+++|| ++|+|++.
T Consensus 607 lpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y-----------------------~gdd~ed~f~l~F~i~~~~ 663 (850)
T KOG0941|consen 607 LPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDY-----------------------EGDDVEDVFDLTFQISQDD 663 (850)
T ss_pred CCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhc-----------------------cccchhhheeeEEEEEehh
Confidence 99999999999999999999999999999999999986 3444554 88999876
Q ss_pred -C-CCceecCCCCC--cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCH
Q 000409 1353 -G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEP 1428 (1555)
Q Consensus 1353 -g-~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~ 1428 (1555)
| ..+++|+|||. +||.+|++|||++|++|.++..|++|++||++||++|+....+++|.|+||+.++||+++ +||
T Consensus 664 ~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~-~Dw 742 (850)
T KOG0941|consen 664 NGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSED-YDW 742 (850)
T ss_pred cCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCc-cCH
Confidence 2 24789999999 999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred HHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC
Q 000409 1429 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP 1508 (1555)
Q Consensus 1429 e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~ 1508 (1555)
+.|++.++|++||+.+||+|+|||++++.|+.++|++||+|+||++|+|++|++.| +++|.+..+
T Consensus 743 ~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l--~~~i~~~~~------------- 807 (850)
T KOG0941|consen 743 KALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL--KLVIQKNGP------------- 807 (850)
T ss_pred HHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc--eEEEecCCC-------------
Confidence 99999999999999999999999999999999999999999999999999999999 677776432
Q ss_pred CCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCCccccC
Q 000409 1509 SESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1554 (1555)
Q Consensus 1509 ~~~~d~~LPsa~TC~n~LkLP~YsS~evLreKL~~AI~eg~g~F~L 1554 (1555)
..++||+||||||.|.||+|||+|.|++||++||++..| |.|
T Consensus 808 ---~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~G-F~l 849 (850)
T KOG0941|consen 808 ---DEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEG-FGL 849 (850)
T ss_pred ---CcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccC-cCC
Confidence 368999999999999999999999999999999999999 876
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=8.2e-74 Score=684.71 Aligned_cols=341 Identities=45% Similarity=0.738 Sum_probs=313.6
Q ss_pred cccccCchhHHHHHHHHHhhhc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccC
Q 000409 1136 QKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDG 1212 (1555)
Q Consensus 1136 ~kv~V~R~~IlesA~~~l~~~~--~~k~~LeV~F~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~~d~ 1212 (1555)
.+++|+|++|+++++++|..+. ..+.+|+|+|.||.|+|. ||+||||++|++|+++++++||+.+++.
T Consensus 1 ~~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~--------- 71 (352)
T cd00078 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDD--------- 71 (352)
T ss_pred CeEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC---------
Confidence 3689999999999999998876 567899999999999995 8999999999999999999999987540
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCCCC
Q 000409 1213 DEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL 1292 (1555)
Q Consensus 1213 ~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~~l 1292 (1555)
..+++|+|..... ..++++|+++|++||+||+++.+++++|+++|||+|+|.++
T Consensus 72 ------------------~~~~~~~p~~~~~--------~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~ 125 (352)
T cd00078 72 ------------------SGLLYPNPSSFAD--------EDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPL 125 (352)
T ss_pred ------------------CceEEeCCCcccc--------hhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCC
Confidence 1267788766521 35789999999999999999999999999999999999999
Q ss_pred CccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCccccccccccc------CCCCceecCCCCC--
Q 000409 1293 DLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTL------PGYPDYILKPGDE-- 1364 (1555)
Q Consensus 1293 tl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftl------pg~~~iEL~pgG~-- 1364 (1555)
+++||+++||+++++|++|+++ ++ .+++++|+|++ .+..++||+|||+
T Consensus 126 t~~Dl~~iD~~~~~sl~~l~~~-----------------------~~-~~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~ 181 (352)
T cd00078 126 SLEDLEELDPELYKSLKELLDN-----------------------DG-DEDDLELTFTIELDSSFGGAVTVELKPGGRDI 181 (352)
T ss_pred CHHHHHHhCHHHHHHHHHHHhc-----------------------CC-chhhhcceeEEEEeecCCCcceEecCCCCCCC
Confidence 9999999999999999999875 11 15678889985 3567899999999
Q ss_pred cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCCC
Q 000409 1365 NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAK 1444 (1555)
Q Consensus 1365 ~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~ 1444 (1555)
+||.+|+++||+++++|+++.+++.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+
T Consensus 182 ~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~-id~~~l~~~~~y~~~~~~~ 260 (352)
T cd00078 182 PVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLEDLKKNTEYKGGYSSD 260 (352)
T ss_pred cCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCC-CCHHHHHhceEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999965 7999999999999999999
Q ss_pred ChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccC
Q 000409 1445 SPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCAN 1524 (1555)
Q Consensus 1445 s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n 1524 (1555)
++.|+|||+||++|+++||++||+|+||++|||+|||++++|+|+|++... ++++||+||||||
T Consensus 261 ~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~----------------~~~~LP~a~TCf~ 324 (352)
T cd00078 261 SPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS----------------PDDRLPTAHTCFN 324 (352)
T ss_pred CHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC----------------CCCCCCcchhhhc
Confidence 999999999999999999999999999999999999999999999987642 5799999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCcccc
Q 000409 1525 YLKLPPYSTKEIMYKKLVYAISEGQGSFD 1553 (1555)
Q Consensus 1525 ~LkLP~YsS~evLreKL~~AI~eg~g~F~ 1553 (1555)
+|+||.|+|+|+||+||++||++|+| ||
T Consensus 325 ~L~LP~Yss~e~l~~kL~~AI~~~~g-F~ 352 (352)
T cd00078 325 LLKLPPYSSKEILREKLLYAINEGAG-FG 352 (352)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCC-CC
Confidence 99999999999999999999999997 96
No 6
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-74 Score=695.40 Aligned_cols=386 Identities=33% Similarity=0.553 Sum_probs=342.7
Q ss_pred HhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhhcCCCCCCCcchhhhcccccccccccCchhHHHHHHHHHhhhc-
Q 000409 1079 QLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS- 1157 (1555)
Q Consensus 1079 ~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~- 1157 (1555)
.+++++||+.||+.|+.+||. .|..=++..+.++ . .|+.....++|||++|++||+..|...+
T Consensus 599 ~IL~e~PF~vPF~~RVklfq~-------lla~dKq~~~~~~-------~--F~~g~s~~~tIRRd~iyeDAfd~f~p~~e 662 (1001)
T KOG0942|consen 599 CILKEIPFFVPFEERVKLFQR-------LLALDKQRHGGDG-------P--FGMGFSPSATIRRDHIYEDAFDAFSPKGE 662 (1001)
T ss_pred HHHHcCCeeechHHHHHHHHH-------HHHHHHHhhcCCC-------C--ccCCCCccEEEehhhhHHHHHHhcCccCC
Confidence 478899999999999999984 2322222111111 1 2232336799999999999999998776
Q ss_pred -CCCceEEEEEcCc-----cccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCceec
Q 000409 1158 -SQKAVLEVEYFGE-----VGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHA 1230 (1555)
Q Consensus 1158 -~~k~~LeV~F~gE-----~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~ 1230 (1555)
+.++.++|+|++| .|+|. |.+|||.+.++++-+++++|+|+.++.
T Consensus 663 ~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~---------------------------- 714 (1001)
T KOG0942|consen 663 PDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED---------------------------- 714 (1001)
T ss_pred cccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc----------------------------
Confidence 4578899999874 56665 799999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCCCC--CccchhccCHHHHHHH
Q 000409 1231 PLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFGKIL 1308 (1555)
Q Consensus 1231 ~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~~l--tl~DL~~vDp~l~~sL 1308 (1555)
+-|||+|-.+..- + ...+++|+|||+++|||||.|.++|+||+.+|.++|+|..- +++||.++||++|+.|
T Consensus 715 -~lLYPNp~~~~l~--~----~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nL 787 (1001)
T KOG0942|consen 715 -HLLYPNPTAAMLL--D----VDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNL 787 (1001)
T ss_pred -ceecCCCCchhhh--h----hHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHH
Confidence 2589999776421 1 25799999999999999999999999999999999999765 9999999999999999
Q ss_pred HHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceecCCCCC--cCCcccHHHHHHHHHHH
Q 000409 1309 QELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDA 1381 (1555)
Q Consensus 1309 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~eYV~lv~~~ 1381 (1555)
..|+++ +|.++++|.|+||+- | ...+||+|||+ +||.+|+.+||++|++|
T Consensus 788 ifLk~y-----------------------~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY 844 (1001)
T KOG0942|consen 788 IFLKNY-----------------------NGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNY 844 (1001)
T ss_pred HHHHhc-----------------------CCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhh
Confidence 999986 566899999999985 3 35789999999 99999999999999999
Q ss_pred HhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHH
Q 000409 1382 TVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPD 1461 (1555)
Q Consensus 1382 ~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~e 1461 (1555)
+|+..|++|+.||++||..|||++||.||++.||+.||+|.++.+|+++|+++|+|-+||+.+||+|.+||+||++|+.|
T Consensus 845 ~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~e 924 (1001)
T KOG0942|consen 845 KLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDE 924 (1001)
T ss_pred HHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHH
Q 000409 1462 QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1541 (1555)
Q Consensus 1462 err~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evLreKL 1541 (1555)
+||+||+|||||+|.|+.|||.|.|+|.|...+ ..+++||+|.||+|.||||+|++++.||+||
T Consensus 925 dKr~fLKFVTscsRpPllGFK~L~P~FcI~n~g----------------sd~~RLPTASTCmNLLKLP~y~~kt~LreKL 988 (1001)
T KOG0942|consen 925 DKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAG----------------SDDDRLPTASTCMNLLKLPPYSNKTLLREKL 988 (1001)
T ss_pred HHHHHHHHHhcCCCcccccchhcCccceeeeCC----------------CccccCCcHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999998643 2679999999999999999999999999999
Q ss_pred HHHHHhCCccccCC
Q 000409 1542 VYAISEGQGSFDLS 1555 (1555)
Q Consensus 1542 ~~AI~eg~g~F~LS 1555 (1555)
+|||+.|.| |+||
T Consensus 989 lYAI~sgAG-FeLS 1001 (1001)
T KOG0942|consen 989 LYAINSGAG-FELS 1001 (1001)
T ss_pred HHHHhcccC-CCCC
Confidence 999999999 9998
No 7
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=5.6e-72 Score=662.31 Aligned_cols=320 Identities=43% Similarity=0.694 Sum_probs=291.0
Q ss_pred CCce-EEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCceecCCCCCC
Q 000409 1159 QKAV-LEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1236 (1555)
Q Consensus 1159 ~k~~-LeV~F~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP 1236 (1555)
.+++ |+|+|.||.|+|. ||+||||+++++|+++++++||+.+++ ..++||
T Consensus 7 ~~~~~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~----------------------------~~~~~~ 58 (336)
T smart00119 7 LKKSVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPN----------------------------DYLLYP 58 (336)
T ss_pred hCCCeEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCC----------------------------CCeEEe
Confidence 3445 9999999999876 799999999999999999999997754 026888
Q ss_pred CCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCCCCCccchhccCHHHHHHHHHHHHHHh
Q 000409 1237 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1316 (1555)
Q Consensus 1237 ~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~vDp~l~~sL~~L~~~~~ 1316 (1555)
+|..... ...++++|+++|++||+||+++.+++++|+++|||+|+|.+++++||+++||+++++|++|+..
T Consensus 59 ~p~~~~~-------~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~-- 129 (336)
T smart00119 59 NPRAFFA-------NPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLN-- 129 (336)
T ss_pred CCCcccc-------chHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHh--
Confidence 8765421 0357899999999999999999999999999999999999999999999999999999999521
Q ss_pred hhhhhhccccCcccchhcccccCCcccccccccc------cCCCCceecCCCCC--cCCcccHHHHHHHHHHHHhhhcHH
Q 000409 1317 RKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFT------LPGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIM 1388 (1555)
Q Consensus 1317 ~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ft------lpg~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~ 1388 (1555)
++..++++|+|+ .++..++||+|||+ +||.+|+++||+++++|++..+++
T Consensus 130 ----------------------~~~~~~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~ 187 (336)
T smart00119 130 ----------------------NDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIE 187 (336)
T ss_pred ----------------------CCCcccccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhHH
Confidence 011234778887 34567899999999 999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHhhcc
Q 000409 1389 RQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQ 1468 (1555)
Q Consensus 1389 ~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLq 1468 (1555)
.|++|||+||++|+|...|++|+|+||+.++||.++ ||+++|+++++|+|||+.+++.|+|||+||++|+++||++||+
T Consensus 188 ~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~ 266 (336)
T smart00119 188 KQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQ 266 (336)
T ss_pred HHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhhe
Confidence 999999999999999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhC
Q 000409 1469 FVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1548 (1555)
Q Consensus 1469 FvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evLreKL~~AI~eg 1548 (1555)
|+||++|+|+|||+.++|+|+|+++.. ++++||+||||||+|+||+|+|+|+||+||++||++|
T Consensus 267 F~TG~~rlP~~G~~~l~~~~~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~ 330 (336)
T smart00119 267 FVTGSSRLPVGGFAALSPKFTIRKAGS----------------DDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEG 330 (336)
T ss_pred eccCCCCCCCCchhhcCCceEEEECCC----------------CCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999997642 5799999999999999999999999999999999999
Q ss_pred CccccCC
Q 000409 1549 QGSFDLS 1555 (1555)
Q Consensus 1549 ~g~F~LS 1555 (1555)
+| |+||
T Consensus 331 ~g-F~l~ 336 (336)
T smart00119 331 KG-FGLS 336 (336)
T ss_pred CC-CCCC
Confidence 88 9997
No 8
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-65 Score=605.56 Aligned_cols=396 Identities=29% Similarity=0.502 Sum_probs=340.4
Q ss_pred hhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhh---cCCCCCCCcchhhhcccccc-cccccCchhHHHHHHHHHhh
Q 000409 1080 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQ---GADGHGSVNEREIRVGRLER-QKVRVSRNRILDSAAKVMEM 1155 (1555)
Q Consensus 1080 l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~---~~~~~~~~~~~~~~~grl~r-~kv~V~R~~IlesA~~~l~~ 1155 (1555)
|++..|.+||+|.|+++|+. ..|... +.-+.... .| ++ ..+.|+|++|+||.+++++.
T Consensus 670 ll~~mpHviP~edRv~lFR~----------fVqkdKa~~~lv~ts~a------~p--~~~t~IvvrR~rivEDGf~qL~~ 731 (1096)
T KOG4427|consen 670 LLTKMPHVIPHEDRVLLFRE----------FVQKDKASRGLVETSDA------SP--ARSTEIVVRRGRIVEDGFQQLNS 731 (1096)
T ss_pred EeccCCcccChHHHHHHHHH----------HHhhhHHhhcccccccC------Cc--cceeEEEEEcccchhhHHHHHHh
Confidence 55679999999999999973 123322 11111111 11 12 45899999999999999998
Q ss_pred hcC--CCceEEEEEcCcc-----ccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCc
Q 000409 1156 YSS--QKAVLEVEYFGEV-----GTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDL 1227 (1555)
Q Consensus 1156 ~~~--~k~~LeV~F~gE~-----G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y 1227 (1555)
.+. .|+.+.|.|++|. |+|. |+.+||...+.+..++|.++||..+.. +
T Consensus 732 l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~----------------------d-- 787 (1096)
T KOG4427|consen 732 LGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTST----------------------D-- 787 (1096)
T ss_pred ccchhhhceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCC----------------------C--
Confidence 875 6999999999866 4566 899999999999999999999987753 0
Q ss_pred eecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCCCC--CccchhccCHHHH
Q 000409 1228 VHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHEL--DLHDIIPFDAEFG 1305 (1555)
Q Consensus 1228 v~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~~l--tl~DL~~vDp~l~ 1305 (1555)
.-|||.|.+... +.++++|+|+||++|||+|+|+++|+||+++|...+||..- .++.|..+||++|
T Consensus 788 ----~~LyPSPts~~~--------en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElY 855 (1096)
T KOG4427|consen 788 ----RRLYPSPTSYHH--------ENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELY 855 (1096)
T ss_pred ----ceecCCchhhhh--------hchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHH
Confidence 148999987642 57899999999999999999999999999999999999765 7889999999999
Q ss_pred HHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceecCCCCC--cCCcccHHHHHHHH
Q 000409 1306 KILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLV 1378 (1555)
Q Consensus 1306 ~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~eYV~lv 1378 (1555)
++|..++.+ +| ++.||||+|++. | ...+||+|||+ .||++|+-.||..+
T Consensus 856 rnLtfvKhY-----------------------dg-d~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~M 911 (1096)
T KOG4427|consen 856 RNLTFVKHY-----------------------DG-DLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAM 911 (1096)
T ss_pred hhhhHHHhh-----------------------cc-cHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHH
Confidence 999999886 33 578999999986 3 35789999999 99999999999999
Q ss_pred HHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCCCChHHHHHHHHHhc-
Q 000409 1379 VDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGE- 1457 (1555)
Q Consensus 1379 ~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~e- 1457 (1555)
++|+++..|++|..||.+||.+++...||++|+|.||+.||.|...++|+++|++|++|.+||..+|++|+|||+||..
T Consensus 912 A~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~d 991 (1096)
T KOG4427|consen 912 AHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGD 991 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999888889999999999999999999999999999985
Q ss_pred CCHHHHHhhcccccCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCC---------CCCCCCCCcEEecccCcccC
Q 000409 1458 FTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGP---------SESADDDLPSVMTCANYLKL 1528 (1555)
Q Consensus 1458 fs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~---------~~~~d~~LPsa~TC~n~LkL 1528 (1555)
|++|||..||+|||.|+|.|+-||+.|.|+|.|.+..-..+ .+.+...|. ...+-.+||+|+||||.|||
T Consensus 992 Ft~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdD-qd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKL 1070 (1096)
T KOG4427|consen 992 FTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDD-QDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKL 1070 (1096)
T ss_pred CChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCc-ccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhC
Confidence 99999999999999999999999999999999875422211 122222221 13477899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccccCC
Q 000409 1529 PPYSTKEIMYKKLVYAISEGQGSFDLS 1555 (1555)
Q Consensus 1529 P~YsS~evLreKL~~AI~eg~g~F~LS 1555 (1555)
|.|+-|.+|||||+|||..+.| |+||
T Consensus 1071 PnY~kkStlreKLrYAIssntG-FELS 1096 (1096)
T KOG4427|consen 1071 PNYKKKSTLREKLRYAISSNTG-FELS 1096 (1096)
T ss_pred CCcchhHHHHHHHHHHhhcCCC-cccC
Confidence 9999999999999999999999 9998
No 9
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=1.1e-65 Score=612.20 Aligned_cols=381 Identities=32% Similarity=0.533 Sum_probs=331.3
Q ss_pred HHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHHHHHhhcCCCCCCCcchhhhcccccccccccCch
Q 000409 1064 DALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRN 1143 (1555)
Q Consensus 1064 ~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~ 1143 (1555)
+|-+++.| ..+...+|-+..|+.++.||+. .+.+.... + ....|.|+|+
T Consensus 323 ~~~~L~~~------f~ll~~~~~ll~F~~Kr~yf~r-------~L~~~~~~-----------~-------~~~~v~v~R~ 371 (720)
T KOG0939|consen 323 NPNILAAG------FSLLLKNPMLLDFDNKRKYFKR-------ELRKEHAS-----------S-------EKLAVLVRRA 371 (720)
T ss_pred Cchhhhcc------hhhheecCcceecccHHHHHHH-------HHHHhhcc-----------C-------CcceEEEeHH
Confidence 45556665 4577889999999999999984 22222110 0 1345889999
Q ss_pred hHHHHHHHHHhhhc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCC
Q 000409 1144 RILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKT 1220 (1555)
Q Consensus 1144 ~IlesA~~~l~~~~--~~k~~LeV~F~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~ 1220 (1555)
.+|++.++++.... ..+..|+|.|.||+|.|+ |++||||.+++||+++|+++||..... +.
T Consensus 372 ~v~~~S~~~~~~~s~~e~~~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~-d~--------------- 435 (720)
T KOG0939|consen 372 LVLEDSFRALLYKSPEELKTRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGS-DQ--------------- 435 (720)
T ss_pred HHHHHHHHHHHhCCHHHHhcceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCC-Cc---------------
Confidence 99999999876554 457799999999999999 599999999999999999999987654 10
Q ss_pred CCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCCCCCccchhcc
Q 000409 1221 SNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPF 1300 (1555)
Q Consensus 1221 ~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~v 1300 (1555)
. -+.|+|.+.- ...++.+|+|.||++||||+||+.++..|.+.|||+++|.++++.|++..
T Consensus 436 ----t-------t~~pn~~s~~--------np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~ 496 (720)
T KOG0939|consen 436 ----T-------TFHPNPNSYV--------NPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESA 496 (720)
T ss_pred ----e-------EEeeCCcccC--------ChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhc
Confidence 0 2345554221 14799999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccc-cccccccC----C-CCceecCCCCC--cCCcccHH
Q 000409 1301 DAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLE 1372 (1555)
Q Consensus 1301 Dp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ied-L~L~Ftlp----g-~~~iEL~pgG~--~VT~~N~~ 1372 (1555)
||++|++|.||++. ++.+ |.|+|... | ...+||+|||+ .||.+|+.
T Consensus 497 DP~y~k~l~~il~n--------------------------dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~ 550 (720)
T KOG0939|consen 497 DPEYYKSLVWILKN--------------------------DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQ 550 (720)
T ss_pred ChHHhhceeehhcC--------------------------CcccceeEEEEEeeccccccceeecccCCCceeeccccHH
Confidence 99999999999763 2222 66666654 3 36899999999 99999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCCCChHHHHHH
Q 000409 1373 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLL 1452 (1555)
Q Consensus 1373 eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~I~~Fw 1452 (1555)
|||+++++++|..+|++|++||.+||+.++|...+.+|++.||+.|+||.+++ |+++|+.+++| +||+..+++|+|||
T Consensus 551 ~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpei-dvdd~k~nt~y-~~~~~~~~~i~wFW 628 (720)
T KOG0939|consen 551 EYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEI-DVDDLKANTEY-LGYTKASSVIQWFW 628 (720)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcc-cHHHHHhhhhh-hcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 99999999999 79999999999999
Q ss_pred HHHhcCCHHHHHhhcccccCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCccc
Q 000409 1453 EIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLK 1527 (1555)
Q Consensus 1453 evl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p-----~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~Lk 1527 (1555)
++|.+|+++||.+|||||||++++|++||+.|.+ +|+|.+.+. ..+.||++|||||.|+
T Consensus 629 rav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~----------------s~d~LP~ahTCfnqL~ 692 (720)
T KOG0939|consen 629 RAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPG----------------STDRLPTAHTCFNQLF 692 (720)
T ss_pred HHHhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCC----------------CCCCCcchhhhhhhhc
Confidence 9999999999999999999999999999999998 899987542 4589999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCccccC
Q 000409 1528 LPPYSTKEIMYKKLVYAISEGQGSFDL 1554 (1555)
Q Consensus 1528 LP~YsS~evLreKL~~AI~eg~g~F~L 1554 (1555)
||.|.|+|.++++|+.||+||..+|++
T Consensus 693 LP~Y~Sye~l~~~LllAi~E~segfg~ 719 (720)
T KOG0939|consen 693 LPHYASYEQLRESLLLAINEGSEGFGM 719 (720)
T ss_pred CcchhhHHHHHHHHHHHHHhhhhccCc
Confidence 999999999999999999999988986
No 10
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=1.2e-60 Score=564.62 Aligned_cols=308 Identities=40% Similarity=0.694 Sum_probs=247.1
Q ss_pred HHHHHHHhccCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcc
Q 000409 1183 TLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLG 1262 (1555)
Q Consensus 1183 slvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG 1262 (1555)
++|++|+++|+++||..+++ ..+ ++|+|..... ..........+++|+++|
T Consensus 1 ~l~~~el~~~~~~lF~~~~~----------------------~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~lG 51 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSN----------------------NGL------FWPNPNSNRD-SPSPASSEEHLKMFRFLG 51 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTT----------------------TCE------EEEECCH-----TTGGGSTTHHHHHHHHH
T ss_pred CHHHHHhcCccCCCceEcCC----------------------CCE------EeCCCccccc-ccccccCHHHHHHHHHHH
Confidence 58999999999999966544 111 1222211000 000000136789999999
Q ss_pred cchhhheecCCcccccCCHHHHHHHh-CCCCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCc
Q 000409 1263 RVMAKALQDGRLLDLPFSTAFYKLVL-GHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAP 1341 (1555)
Q Consensus 1263 ~~iakAl~d~~~ldl~fs~~f~K~Ll-g~~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1341 (1555)
+|||+||+++.+++++|+++|||+|+ |.+++++||..+||+++++|++|+++.. +...
T Consensus 52 ~lig~ai~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~---------------------~~~~ 110 (317)
T PF00632_consen 52 RLIGKAIRNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDN---------------------DEED 110 (317)
T ss_dssp HHHHHHHHTTS-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHS---------------------GSCT
T ss_pred HHHHHHHHcCCccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccc---------------------cccc
Confidence 99999999999999999999999999 9999999999999999999999987411 1224
Q ss_pred ccccccccccCCC------CceecCCCCC--cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHH
Q 000409 1342 IEDLCLDFTLPGY------PDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPH 1413 (1555)
Q Consensus 1342 iedL~L~Ftlpg~------~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~ 1413 (1555)
+++++|+|+++.. .++||++||. .||.+|+++||++++++++.++++.|+++||+||.+|+|...|++|+|+
T Consensus 111 ~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~ 190 (317)
T PF00632_consen 111 VEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPE 190 (317)
T ss_dssp TSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHH
T ss_pred eeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHH
Confidence 6789999998732 3689999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCcCCHHHHhhhcEecCCCCCCChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCCceEEEec
Q 000409 1414 ELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRK 1493 (1555)
Q Consensus 1414 EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~~tIv~k 1493 (1555)
||+.++||.++.||+++|+++++|++||+.+++.|+|||+||++|+++||++||+|+||++|+|+|||+.|+|+|+|++.
T Consensus 191 eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~~ 270 (317)
T PF00632_consen 191 ELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQFS 270 (317)
T ss_dssp HHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEEE
T ss_pred HHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEeec
Confidence 99999999887579999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCCccccCC
Q 000409 1494 HSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555 (1555)
Q Consensus 1494 ~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evLreKL~~AI~eg~g~F~LS 1555 (1555)
... ++++||+||||||+|+||.|+|+|+||+||++||++|+++|+||
T Consensus 271 ~~~---------------~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~gF~~s 317 (317)
T PF00632_consen 271 DDS---------------PDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQEGFGLS 317 (317)
T ss_dssp SC----------------STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT-------
T ss_pred CCC---------------ccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCCCcCcC
Confidence 632 46899999999999999999999999999999999995569998
No 11
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=378.94 Aligned_cols=329 Identities=28% Similarity=0.428 Sum_probs=286.7
Q ss_pred cccccccCchhHHHHHHHHHhhhc--CCCceEEEEEcCccccCC-cchHHHHHHHHHHHhccCCCCcccCCCCCCCCccc
Q 000409 1134 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1210 (1555)
Q Consensus 1134 ~r~kv~V~R~~IlesA~~~l~~~~--~~k~~LeV~F~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~~ 1210 (1555)
+..+++|+|+++||++++.+...+ +.+..+-+.|.||+|.+. |+-||||.++++|.+.|.+++|.+... + .+.+
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~-~-~tlq- 91 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRK-D-YTLW- 91 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccccccccCCCCcceeeeeccccCCcceeeeeeccc-c-cccc-
Confidence 467899999999999987654433 468889999999999777 789999999999999999999988754 1 2222
Q ss_pred cCCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCccCCCchhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCC
Q 000409 1211 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1290 (1555)
Q Consensus 1211 d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~ 1290 (1555)
.+|... . ...++.+|+|+|+++|+|+++++.++-- -..|||.|+++
T Consensus 92 -------------------------~~P~sg---~-----~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~k 137 (358)
T KOG0940|consen 92 -------------------------LNPRSG---V-----NPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKK 137 (358)
T ss_pred -------------------------cCCccC---C-----CCCcccccccccccccccceeeEecCCC-ceehhhhhhcC
Confidence 233222 0 1358999999999999999999999987 99999999999
Q ss_pred CCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccchhcccccCCcccccccccccC----C-CCceecCCCCC-
Q 000409 1291 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE- 1364 (1555)
Q Consensus 1291 ~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~iEL~pgG~- 1364 (1555)
+++++|.+.+|+++++++.+++.. ++.. ||+|.++ | ....+|+|+|.
T Consensus 138 tt~ldd~e~~d~e~~~s~~~~~en--------------------------~~~~-~~~f~~~~~~~g~~~~~~l~p~g~~ 190 (358)
T KOG0940|consen 138 TTTLDDREAVDPEFYNSLTWIREN--------------------------DPTN-DLTFSVESEVLGQITTQELKPNGAN 190 (358)
T ss_pred ccccCchhhcCccccccccccccC--------------------------Cccc-chhhhcchhhcCCccceeecCCCcc
Confidence 999999999999999999988652 1112 6777765 3 35789999998
Q ss_pred -cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhcccccccccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCC
Q 000409 1365 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1443 (1555)
Q Consensus 1365 -~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~ 1443 (1555)
.||.+|+++||.++++ ++..++..|.++|..||..+.|...+++|.+.|++.++||..++ ++++++.++.|. ||..
T Consensus 191 ~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~-~~~d~~~~t~~~-~~~~ 267 (358)
T KOG0940|consen 191 IQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEI-DVNDWKQNTEYR-GYSE 267 (358)
T ss_pred cccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCccc-chhHHhhhcccc-cccC
Confidence 9999999999999999 88889999999999999999999999999999999999999986 999999999997 8999
Q ss_pred CChHHHHHHHHHhcCCHHHHHhhcccccCCCCCCCCCCccCCC-----ceEEEecCCCCCCCCCCCCCCCCCCCCCCCcE
Q 000409 1444 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1518 (1555)
Q Consensus 1444 ~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p-----~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1518 (1555)
++++|.|||+++.+|++++|.+.|+|+||++++|.+||+.|.- +++|-. . ...+.||.
T Consensus 268 ~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~-~----------------~~~~~~p~ 330 (358)
T KOG0940|consen 268 TDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEK-W----------------GKSTQLPR 330 (358)
T ss_pred CccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecC-c----------------ccccccch
Confidence 9999999999999999999999999999999999999998874 566544 1 15689999
Q ss_pred EecccCcccCCCCCCHHHHHHHHHHHHH
Q 000409 1519 VMTCANYLKLPPYSTKEIMYKKLVYAIS 1546 (1555)
Q Consensus 1519 a~TC~n~LkLP~YsS~evLreKL~~AI~ 1546 (1555)
+|||||.|.||.|.+++.|++||..||+
T Consensus 331 ~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 331 SHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred hcccccccccccccchhHHHHHHHHhcC
Confidence 9999999999999999999999999984
No 12
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-37 Score=370.74 Aligned_cols=258 Identities=25% Similarity=0.395 Sum_probs=217.0
Q ss_pred hhHHHHHHhcccchhhheecCCcccccCCHHHHHHHhCCCCCccchhccCHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 000409 1252 SKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEE 1331 (1555)
Q Consensus 1252 ~~~l~~F~~LG~~iakAl~d~~~ldl~fs~~f~K~Llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~~~~~~~~~~~~~~~ 1331 (1555)
+..+..|+-+|+++|.||..|-+.++.|++.+||+|||.++.|.|+..+||.++.+|+.|.... +..+..
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAh---------psSd~D- 2808 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAH---------PSSDAD- 2808 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcC---------Cccccc-
Confidence 4679999999999999999999999999999999999999999999999999999999987631 100000
Q ss_pred hhcccccCCccccccccccc-----CCCCceecCCCCC--cCCcccHHHHHHHHHHHHhhhcHHHHHHHHHhhccccccc
Q 000409 1332 VVDLRFRGAPIEDLCLDFTL-----PGYPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDI 1404 (1555)
Q Consensus 1332 ~~~l~~~~~~iedL~L~Ftl-----pg~~~iEL~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~aFr~GF~~V~p~ 1404 (1555)
..+.-+.|.|.. .|...++|+|||. +||.+|+-|||.+|++++|...-...++|+|+|+..|+|.
T Consensus 2809 --------adFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPe 2880 (3015)
T KOG0943|consen 2809 --------ADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPE 2880 (3015)
T ss_pred --------chhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcch
Confidence 011112222222 2556899999998 9999999999999999999887777899999999999999
Q ss_pred ccccCCCHHHHHhhhcCCCCcCCHHHHhhhcEecCCCCCCC--------hHHHHHHHHHhcCCHHHHHhhcccccCCCCC
Q 000409 1405 TSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKS--------PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRL 1476 (1555)
Q Consensus 1405 ~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s--------~~I~~Fwevl~efs~eerr~FLqFvTGs~rL 1476 (1555)
+.|.-++++++..+|||.++. ++..|.+.|-| ..+| +.-+|||+|++.|+..||..+..||||||.|
T Consensus 2881 nmL~~LT~EDfRLiicG~eeV-niqmL~e~TgF----lDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaL 2955 (3015)
T KOG0943|consen 2881 NMLEDLTAEDFRLIICGCEEV-NIQMLIEFTGF----LDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPAL 2955 (3015)
T ss_pred hhhcccCHhHheeeeecccce-ehhHhhhhccc----cccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCC
Confidence 999999999999999999885 99999988754 4443 3568999999999999999999999999999
Q ss_pred CCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCcEEecccCcccCCCCCCHHHHHHHHHHHHHhCC
Q 000409 1477 PPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1549 (1555)
Q Consensus 1477 P~gGf~~L~p~~tIv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evLreKL~~AI~eg~ 1549 (1555)
|..|- .+.|.-.|...++ .|.+||+|+||..+|..|-||||.|||+||+.||+-..
T Consensus 2956 PAa~e-~~p~~aSimiRP~----------------dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKaKN 3011 (3015)
T KOG0943|consen 2956 PAAEE-GFPPMASIMIRPP----------------DDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKAKN 3011 (3015)
T ss_pred Ccccc-CCCCCCceeecCc----------------ccccCCcccchhhheeeechhhHHHHHHHHHHhhhccc
Confidence 98762 2333334444443 57899999999999999999999999999999999763
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4e-16 Score=188.54 Aligned_cols=236 Identities=22% Similarity=0.341 Sum_probs=203.8
Q ss_pred CCCCC-CCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCc
Q 000409 1 MCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 79 (1555)
Q Consensus 1 ~Cr~i-~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~ 79 (1555)
+||+. |+..|..|+.++|+|..+|.+.|..|+..|||++++|+|.- +++++.+++.|++++|+.||.+.
T Consensus 222 lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~---ne~iq~vi~~gvv~~LV~lL~~~------- 291 (514)
T KOG0166|consen 222 LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS---NEKIQMVIDAGVVPRLVDLLGHS------- 291 (514)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---hHHHHHHHHccchHHHHHHHcCC-------
Confidence 48888 99999999999999999999999999999999999999986 99999999999999999999765
Q ss_pred ccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCC-C----CCCCcccCCChhhHHHHHHHHHhhCC
Q 000409 80 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSA-N----SAVPPALSRPAEQIFEIVNLANELLP 154 (1555)
Q Consensus 80 ~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~-~----~~~~~~~~rp~eql~evl~LI~eLLP 154 (1555)
+..+.+..||++++++.|+..++..++.+|+.+.|..+|+.+...+ + ..++++.++..+|++.|+.
T Consensus 292 --~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid------- 362 (514)
T KOG0166|consen 292 --SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID------- 362 (514)
T ss_pred --CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH-------
Confidence 4457789999999999999999999999999999999997644321 1 1233444455555554442
Q ss_pred CCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHH
Q 000409 155 PLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPV 234 (1555)
Q Consensus 155 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~V 234 (1555)
..|+|.|+.+++++ ++.+
T Consensus 363 -------------------------------------------------------------a~l~p~Li~~l~~~-ef~~ 380 (514)
T KOG0166|consen 363 -------------------------------------------------------------ANLIPVLINLLQTA-EFDI 380 (514)
T ss_pred -------------------------------------------------------------cccHHHHHHHHhcc-chHH
Confidence 47899999999999 6999
Q ss_pred HHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhCh-------hhHHHHHHHhcHH
Q 000409 235 RHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLP-------GTFSKMFVREGVV 307 (1555)
Q Consensus 235 R~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klp-------d~f~~~F~REGV~ 307 (1555)
|+++.|||.++..-.++++++.+++...| ..+..+|...|.+++..+|..++.|++-.+ ..|....+..|-+
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI-~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl 459 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGII-KPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL 459 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCc-hhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh
Confidence 99999999999999999999999999866 899999999999999999999988886432 5577889999999
Q ss_pred HHHHHHhhcCC
Q 000409 308 HAVDQLILAGN 318 (1555)
Q Consensus 308 ~~I~~La~~~~ 318 (1555)
++|+.|..+++
T Consensus 460 dkiE~LQ~hen 470 (514)
T KOG0166|consen 460 DKIENLQSHEN 470 (514)
T ss_pred hHHHHhhcccc
Confidence 99999999865
No 14
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.59 E-value=2e-14 Score=161.38 Aligned_cols=235 Identities=19% Similarity=0.289 Sum_probs=201.5
Q ss_pred CCCCC-CCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCc
Q 000409 1 MCKKL-PSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQA 79 (1555)
Q Consensus 1 ~Cr~i-~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~ 79 (1555)
+||.. |+.++..|+.++|+|..++.+-|+.|+-.||||+++|+|+- .|+++.+++.|.-++++.||++.
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~---~E~i~avld~g~~~RLvElLs~~------- 297 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP---NEKIQAVLDVGIPGRLVELLSHE------- 297 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc---HHHHHHHHhcCCcHHHHHHhcCc-------
Confidence 58877 88999999999999999999999999999999999999996 89999999999999999999775
Q ss_pred ccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCC----CCCCCCCcccCCChhhHHHHHHHHHhhCCC
Q 000409 80 SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV----SANSAVPPALSRPAEQIFEIVNLANELLPP 155 (1555)
Q Consensus 80 ~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~----~~~~~~~~~~~rp~eql~evl~LI~eLLP~ 155 (1555)
|..+.+..||+.++++.|+...+..+++||....++-+|..-.. ..-.+++++.++..+|++.++.
T Consensus 298 --sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid-------- 367 (526)
T COG5064 298 --SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID-------- 367 (526)
T ss_pred --cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh--------
Confidence 55678999999999999999999999999999999999855332 1122345555666666665552
Q ss_pred CCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHH
Q 000409 156 LPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVR 235 (1555)
Q Consensus 156 lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR 235 (1555)
..|.|.|++..++. .+-+|
T Consensus 368 ------------------------------------------------------------~nliPpLi~lls~a-e~k~k 386 (526)
T COG5064 368 ------------------------------------------------------------ANLIPPLIHLLSSA-EYKIK 386 (526)
T ss_pred ------------------------------------------------------------cccchHHHHHHHHH-HHHHH
Confidence 46778899888765 89999
Q ss_pred HHHHHHHHHHccCC--CHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHH----------hChhhHHHHHHH
Q 000409 236 HKCLSVIGKLMYFS--SAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME----------KLPGTFSKMFVR 303 (1555)
Q Consensus 236 ~k~L~ailk~v~~~--~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~----------Klpd~f~~~F~R 303 (1555)
+.+.|||.+..|.. -|++|+.++.+..| --|+.+|.-.|..++-.+|..+|.+++ |.+.+|..+.++
T Consensus 387 KEACWAisNatsgg~~~PD~iryLv~qG~I-kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~ 465 (526)
T COG5064 387 KEACWAISNATSGGLNRPDIIRYLVSQGFI-KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEK 465 (526)
T ss_pred HHHHHHHHhhhccccCCchHHHHHHHccch-hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHh
Confidence 99999999999874 58999999998877 788999999999999999999999886 445679999999
Q ss_pred hcHHHHHHHHhhcC
Q 000409 304 EGVVHAVDQLILAG 317 (1555)
Q Consensus 304 EGV~~~I~~La~~~ 317 (1555)
-|.|+.|..|....
T Consensus 466 Aggmd~I~~~Q~s~ 479 (526)
T COG5064 466 AGGMDAIHGLQDSV 479 (526)
T ss_pred cccHHHHHHhhhcc
Confidence 99999999888643
No 15
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.8e-08 Score=125.00 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=112.4
Q ss_pred HHHHHHHHhccCCCcccceeccccchHHHHHHhhccCccchhhhHHHHHHHHHHHHHH-HHhHhhccCCC--CCC----C
Q 000409 462 GVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRF-KSFIAVALPNS--LDA----G 534 (1555)
Q Consensus 462 ~~l~~l~~~L~~~~~ISsFEl~~SGLV~sLl~~Ls~~~~~~~~~~~~~~~r~~~~~~f-~~F~~~~~~~~--~~~----~ 534 (1555)
..+.++...|.. ..+++||+.|+|.++.++.||+++.+. -..+-.++++| +.|....+... .+. -
T Consensus 860 ~~i~~lqssLs~-~e~~p~vlsh~~~~kn~~~~lsSg~t~-------~s~~~i~~~~fl~~f~~~ple~~~~~~~~v~~l 931 (1051)
T KOG0168|consen 860 LLIQKLQSSLSS-LEKFPFVLSHSGSKKNILAYLSSGETI-------LSVPCIRLRTFLHVFLRLPLEPMLQPNVQVPPL 931 (1051)
T ss_pred HHHHHHHHHHHh-hhcCceEecCchhhhhhhhhcccCcch-------hhhHHHHHHHHHHHHhcCCchhhccccccCCCc
Confidence 445566666543 347999999999999999999986311 11122334434 55655444221 011 1
Q ss_pred CCChHHHHHHHHHHHhhhcccccEEEccCCCCCCCCCCCCcccccc-cCceEEEEEecCCCCCcCCCCCCeEEecccccH
Q 000409 535 DVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSAL-SQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASL 613 (1555)
Q Consensus 535 ~~~pls~LV~KLq~aLsr~E~FpV~~~~~~~~~~~~~~~ss~ls~L-akqlKlrL~r~~d~~~l~~~~~~~VsIhpiATf 613 (1555)
...|+..+|+|+..||.++|+|||..++.+... |+......+++. ++++|+.+++++.++..++|+|+.|+|+|.+-+
T Consensus 932 ~~~~~~a~~~~~~~cl~~m~~~~~k~~d~p~~~-~~r~~~~s~~~~n~~dlk~~~~~h~~~~~~kq~kG~~~~iep~~~~ 1010 (1051)
T KOG0168|consen 932 TSSPAEADVEKENNCLDQMEQVPVKVHDFPAGT-GGRGSQFSTSFFNTHDLKCLLQRHPTCKNCKQLKGGNVKIEPAAEV 1010 (1051)
T ss_pred cccchhhhhhcccCCcchhhcCCCccccccCcC-CcccchhhhheeecccccCccccCccccchhhhcCCCcccChhhhc
Confidence 346899999999999999999999987765432 221112344555 999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcc
Q 000409 614 AAVEEFLWPRVQR 626 (1555)
Q Consensus 614 ~aLedyL~pRv~~ 626 (1555)
++++.|+..|-+.
T Consensus 1011 ~g~q~~~~~~~~~ 1023 (1051)
T KOG0168|consen 1011 QGIQRRSVVRKRG 1023 (1051)
T ss_pred hhhHHHHHHhhcc
Confidence 9999999877663
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.95 E-value=0.00074 Score=94.84 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=165.1
Q ss_pred CCCC-CCCChhhHHHHH------HHHHhhhcC-------------CChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhH
Q 000409 2 CKKL-PSDAADFVMEAV------PLLTNLLQY-------------HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGL 61 (1555)
Q Consensus 2 Cr~i-~~~~F~~V~e~~------PiL~nvL~~-------------~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~L 61 (1555)
|++- |...+..|.+++ |.|+.+|.+ .|..+.+++|+||..++++ +.+..+.+++.|.
T Consensus 371 lr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~---~~e~~~aIi~~gg 447 (2102)
T PLN03200 371 LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCG---KGGLWEALGGREG 447 (2102)
T ss_pred hCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCC---CHHHHHHHHHcCc
Confidence 5544 333466777776 555555555 4599999999999999977 4788999999999
Q ss_pred HHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhh
Q 000409 62 VTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQ 141 (1555)
Q Consensus 62 l~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eq 141 (1555)
++.|+++|... +.......++.|++++.++++....++++|.++.|.++|.... .+.
T Consensus 448 Ip~LV~LL~s~---------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~--------------~~i 504 (2102)
T PLN03200 448 VQLLISLLGLS---------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS--------------QKA 504 (2102)
T ss_pred HHHHHHHHcCC---------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------------HHH
Confidence 99999999654 4557788999999999999999999999999999999995311 111
Q ss_pred HHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHH--HhHH
Q 000409 142 IFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG--MDLL 219 (1555)
Q Consensus 142 l~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~--~~Ll 219 (1555)
-.+++..|..| + .+++..+..+ ...+
T Consensus 505 qeeAawAL~NL---------a-------------------------------------------~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 505 KEDSATVLWNL---------C-------------------------------------------CHSEDIRACVESAGAV 532 (2102)
T ss_pred HHHHHHHHHHH---------h-------------------------------------------CCcHHHHHHHHHCCCH
Confidence 23333333311 0 0111122323 2578
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhH--
Q 000409 220 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF-- 297 (1555)
Q Consensus 220 PvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f-- 297 (1555)
|.|++++.+. ++.++..++++|.++++..+.+.+. .|..+|.++|+.+...+|..+..++.-.....
T Consensus 533 ppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~----------~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 533 PALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATIS----------QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHH----------HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 9999999887 8999999999999999999988773 34456888888888888888877766444322
Q ss_pred HHHHHHhcHHHHHHHHhhcCC
Q 000409 298 SKMFVREGVVHAVDQLILAGN 318 (1555)
Q Consensus 298 ~~~F~REGV~~~I~~La~~~~ 318 (1555)
..--...|.+..+..|..+++
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs 622 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSK 622 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCC
Confidence 111224578888888887653
No 17
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0024 Score=79.11 Aligned_cols=219 Identities=19% Similarity=0.237 Sum_probs=171.3
Q ss_pred HHHHHHHHhhhcCCCh-hHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHH
Q 000409 14 MEAVPLLTNLLQYHDA-KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~-~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~ 92 (1555)
..+|+.|...++..++ ..+-++.||++.+|.+=.-. -.++.+. .+|+.|..||.+. ...+++...=.
T Consensus 193 ~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~-P~~~~v~--~iLp~L~~ll~~~---------D~~Vl~Da~WA 260 (514)
T KOG0166|consen 193 CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS-PPFDVVA--PILPALLRLLHST---------DEEVLTDACWA 260 (514)
T ss_pred hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC-CcHHHHH--HHHHHHHHHHhcC---------CHHHHHHHHHH
Confidence 3578888888999998 88999999999999886422 2333333 6788999999665 56788888999
Q ss_pred HHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCC----CCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcc
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSA----VPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSN 168 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~----~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~ 168 (1555)
|+-++-++++....+++.|++.-|.++|..+.....++ +-+++.+..+|-+.+++
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~--------------------- 319 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN--------------------- 319 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh---------------------
Confidence 99999999999999999999999999997766433222 23345555555555542
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccC
Q 000409 169 MFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 248 (1555)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~ 248 (1555)
..+||.|....+.+-...||+.+.|.|.+|.-
T Consensus 320 -----------------------------------------------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA- 351 (514)
T KOG0166|consen 320 -----------------------------------------------SGALPVLSNLLSSSPKESIKKEACWTISNITA- 351 (514)
T ss_pred -----------------------------------------------cChHHHHHHHhccCcchhHHHHHHHHHHHhhc-
Confidence 34578888888877777899999999999998
Q ss_pred CCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHh
Q 000409 249 SSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLI 314 (1555)
Q Consensus 249 ~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La 314 (1555)
.+.++++.|.....+ -.|..+|..-|..+=.-|.-++-.+....-..-..++.+.|++..+-.|.
T Consensus 352 G~~~qiqaVida~l~-p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL 416 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLI-PVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL 416 (514)
T ss_pred CCHHHHHHHHHcccH-HHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence 799999999988555 77788888888777777777777777777777888999999887776666
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.20 E-value=0.017 Score=81.93 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=176.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHH
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS 94 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls 94 (1555)
..+|.|-.+|.+.+..+.+.||+++..|+.+ +++.-+.+++.|.|+.+++||... +..+.-...-+|+
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~---ndenr~aIieaGaIP~LV~LL~s~---------~~~iqeeAawAL~ 513 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDE---VDESKWAITAAGGIPPLVQLLETG---------SQKAKEDSATVLW 513 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHcCC---------CHHHHHHHHHHHH
Confidence 3789999999999999999999999999764 466778899999999999999654 4568888999999
Q ss_pred HHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCC----CCccc-CCChhhHHHHHHHHHhhCCCCCCCCc--------
Q 000409 95 TCASGSPLCAKTLLHLGISGILKDILSGSGVSANSA----VPPAL-SRPAEQIFEIVNLANELLPPLPQGTI-------- 161 (1555)
Q Consensus 95 ~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~----~~~~~-~rp~eql~evl~LI~eLLP~lP~~~~-------- 161 (1555)
++|..++.+...+.+.|+++.|.++|.....-.+.. +.+++ ....+++..++.| |+-..|....
T Consensus 514 NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L---Llsdd~~~~~~aL~vLgn 590 (2102)
T PLN03200 514 NLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL---LLGDLPESKVHVLDVLGH 590 (2102)
T ss_pred HHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH---hcCCChhHHHHHHHHHHH
Confidence 999998888777878999999999995422101000 11111 1223333322222 1111111000
Q ss_pred --cCCCCccccccC-----CcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHH-HHHHhHHHHHHHHHhcCCChH
Q 000409 162 --SLPSSSNMFVKG-----PVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQ-QFGMDLLPVLIQIYGSSVNSP 233 (1555)
Q Consensus 162 --~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~-~f~~~LlPvLi~vy~ssv~~~ 233 (1555)
......+.+..+ -+..-..=..+++.. ..+.....=..+...+++... ......+|.|+...++. +..
T Consensus 591 Ilsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~---ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~ 666 (2102)
T PLN03200 591 VLSVASLEDLVREGSAANDALRTLIQLLSSSKEE---TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEA 666 (2102)
T ss_pred HHhhcchhHHHHHhhhccccHHHHHHHHcCCCHH---HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChH
Confidence 000000000000 000000000000000 000000001112233333222 22346678888888765 899
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHH
Q 000409 234 VRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQL 313 (1555)
Q Consensus 234 VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~L 313 (1555)
||+.+-++|..+....+.+....+.+...+ --|..+|...|..++..||..+..|++.... ...+.++|++..+-.+
T Consensus 667 v~keAA~AL~nL~~~~~~~q~~~~v~~GaV-~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~l 743 (2102)
T PLN03200 667 VATQSARALAALSRSIKENRKVSYAAEDAI-KPLIKLAKSSSIEVAEQAVCALANLLSDPEV--AAEALAEDIILPLTRV 743 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHcCCH-HHHHHHHhCCChHHHHHHHHHHHHHHcCchH--HHHHHhcCcHHHHHHH
Confidence 999999999999998999888888877666 4488999999999999999999999987764 5667777877777666
Q ss_pred hhcC
Q 000409 314 ILAG 317 (1555)
Q Consensus 314 a~~~ 317 (1555)
....
T Consensus 744 Lr~G 747 (2102)
T PLN03200 744 LREG 747 (2102)
T ss_pred HHhC
Confidence 6543
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.78 E-value=0.0083 Score=59.97 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=85.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHH
Q 000409 16 AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLST 95 (1555)
Q Consensus 16 ~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~ 95 (1555)
++|.|...|++.|..+.+.+++|+..++... ++..+.+++.+.++.++++|... ++...-..+.+|+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~---------~~~v~~~a~~~L~~ 75 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKSE---------DEEVVKAALWALRN 75 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhCC---------CHHHHHHHHHHHHH
Confidence 8899999999999999999999999999885 88888889999999999999654 45677889999999
Q ss_pred HhcCCHHHHHHHHhcCchhHHHHHhcC
Q 000409 96 CASGSPLCAKTLLHLGISGILKDILSG 122 (1555)
Q Consensus 96 la~~Sp~ls~~Ll~~~i~~tL~~iLtg 122 (1555)
+|...+.....+.+.|+.+.|.+.|..
T Consensus 76 l~~~~~~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 76 LAAGPEDNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HccCcHHHHHHHHHCCChHHHHHHHhc
Confidence 999999999999999999999999843
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.70 E-value=0.14 Score=65.31 Aligned_cols=214 Identities=19% Similarity=0.225 Sum_probs=151.3
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHh
Q 000409 18 PLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCA 97 (1555)
Q Consensus 18 PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la 97 (1555)
|+|-+.|+.++...|+.+|-++.++.+.+ .+..+ ..+....+++.|.+. ++.....+++.|..++
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l----~~~~~~~L~~gL~h~---------~~~Vr~l~l~~l~~~~ 105 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL----LPQYQPFLQRGLTHP---------SPKVRRLALKQLGRIA 105 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH----HHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHh
Confidence 34777799999999999999999999976 44443 446667777777654 4567788889899999
Q ss_pred cCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhH-HHHHHHHHhhCCCCCCCCccCCCCccccccCCcc
Q 000409 98 SGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQI-FEIVNLANELLPPLPQGTISLPSSSNMFVKGPVV 176 (1555)
Q Consensus 98 ~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql-~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~ 176 (1555)
..+..++..+.+.++...|.+.|.. +...+ ..++++|..|...-+
T Consensus 106 ~~~~~~~~~~~~~~l~~~i~~~L~~---------------~d~~Va~~A~~~L~~l~~~~~------------------- 151 (503)
T PF10508_consen 106 RHSEGAAQLLVDNELLPLIIQCLRD---------------PDLSVAKAAIKALKKLASHPE------------------- 151 (503)
T ss_pred cCCHHHHHHhcCccHHHHHHHHHcC---------------CcHHHHHHHHHHHHHHhCCch-------------------
Confidence 9999888888889988888888833 11222 445555554443111
Q ss_pred cCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHH
Q 000409 177 RKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQS 256 (1555)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~ 256 (1555)
++-.-|-..+++.|.++.... +..||.+++.++.++... +++.+..
T Consensus 152 --------------------------------~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~-S~~~~~~ 197 (503)
T PF10508_consen 152 --------------------------------GLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASH-SPEAAEA 197 (503)
T ss_pred --------------------------------hHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 000111223367777777664 678999999999999655 5677777
Q ss_pred hhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhcC
Q 000409 257 LLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAG 317 (1555)
Q Consensus 257 vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~~ 317 (1555)
+.....+..++. -|..+|.-+-+.||+|+.-|-+ .+.- ..++.+.||+.+|..+....
T Consensus 198 ~~~sgll~~ll~-eL~~dDiLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 198 VVNSGLLDLLLK-ELDSDDILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHhccHHHHHHH-HhcCccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhcc
Confidence 777666644444 4445666566789999999988 4443 56778899999999998754
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=96.42 E-value=0.14 Score=67.68 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=135.5
Q ss_pred hhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHH
Q 000409 10 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 89 (1555)
Q Consensus 10 F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~ 89 (1555)
..++..+++.|.+.|.+.++-|--.|++|+.+|- +.+|+.+ ...++++.|..||... ++.+...+
T Consensus 135 ~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly---~~~pelv---~~~~~~~~L~~LL~D~---------dp~Vv~nA 199 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLF---HDDMQLF---YQQDFKKDLVELLNDN---------NPVVASNA 199 (746)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---hhCcccc---cccchHHHHHHHhcCC---------CccHHHHH
Confidence 4577888999999999999999999999999994 4456432 2456888889988765 45688889
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccc
Q 000409 90 IRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNM 169 (1555)
Q Consensus 90 Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~ 169 (1555)
+.+|..++..+|.. ..+. ..+...|+..|..+. +--|+ .++++++..-| .
T Consensus 200 l~aL~eI~~~~~~~-l~l~-~~~~~~Ll~~L~e~~-------------EW~Qi-~IL~lL~~y~P---~----------- 249 (746)
T PTZ00429 200 AAIVCEVNDYGSEK-IESS-NEWVNRLVYHLPECN-------------EWGQL-YILELLAAQRP---S----------- 249 (746)
T ss_pred HHHHHHHHHhCchh-hHHH-HHHHHHHHHHhhcCC-------------hHHHH-HHHHHHHhcCC---C-----------
Confidence 99999988877753 1222 332333444442222 22333 46666653222 0
Q ss_pred cccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCC
Q 000409 170 FVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFS 249 (1555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~ 249 (1555)
+.+.+..++..+.|. .++ .|+.|-..|..+++.+..++
T Consensus 250 -------------------------------------~~~e~~~il~~l~~~----Lq~-~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 250 -------------------------------------DKESAETLLTRVLPR----MSH-QNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred -------------------------------------CcHHHHHHHHHHHHH----hcC-CCHHHHHHHHHHHHHhcCcC
Confidence 001122334444443 445 48999999999999999888
Q ss_pred CHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHH
Q 000409 250 SAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFV 302 (1555)
Q Consensus 250 ~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~ 302 (1555)
+++.++.+++.. +.-|-.+ .+.++.+-..+|+.+.+|+.+.|.+|..+++
T Consensus 288 ~~~~~~~~~~rl--~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 288 SQELIERCTVRV--NTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLD 337 (746)
T ss_pred CHHHHHHHHHHH--HHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 877777665432 1222222 4677888889999999999999999877653
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.26 E-value=0.0068 Score=60.59 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=65.3
Q ss_pred CCCChhhHH-HHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCch
Q 000409 6 PSDAADFVM-EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 84 (1555)
Q Consensus 6 ~~~~F~~V~-e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~ 84 (1555)
+.....+++ +++|.|.++|+++|++|++.+++|+++|+... +...+.+...|+++.++++|... +..
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~l~~l~~~l~~~---------~~~ 106 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP---EDNKLIVLEAGGVPKLVNLLDSS---------NED 106 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc---HHHHHHHHHCCChHHHHHHHhcC---------CHH
Confidence 333445566 99999999999999999999999999998765 67888888999999999999543 345
Q ss_pred hHHHHHHHHHHHh
Q 000409 85 TYTGLIRLLSTCA 97 (1555)
Q Consensus 85 t~~~~Lr~Ls~la 97 (1555)
+....+.+|.++|
T Consensus 107 ~~~~a~~~l~~l~ 119 (120)
T cd00020 107 IQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHHhh
Confidence 6677777777776
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.39 E-value=1.2 Score=56.89 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHH
Q 000409 13 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 13 V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~ 92 (1555)
+.+..|.|...|+|.++.|.+.+|..|.|++. ++...++.+.+.+++..|+.+|... +...-...+++
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~---~~~~~~~~~~~~~l~~~i~~~L~~~---------d~~Va~~A~~~ 142 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR---HSEGAAQLLVDNELLPLIIQCLRDP---------DLSVAKAAIKA 142 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---CCHHHHHHhcCccHHHHHHHHHcCC---------cHHHHHHHHHH
Confidence 67888899999999999999999999999884 4566788888999999999999665 34577889999
Q ss_pred HHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcccccc
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVK 172 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~ 172 (1555)
|..+++..+.+ ..|+..++...|.+++..+.. +- +=.++|++--|+ =
T Consensus 143 L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~---------~v--R~Rv~el~v~i~---~------------------ 189 (503)
T PF10508_consen 143 LKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSD---------IV--RCRVYELLVEIA---S------------------ 189 (503)
T ss_pred HHHHhCCchhH-HHHhCcchHHHHHHHHhccCH---------HH--HHHHHHHHHHHH---h------------------
Confidence 99999977665 568899988888888854221 01 122455443222 0
Q ss_pred CCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHH--hHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCC
Q 000409 173 GPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGM--DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSS 250 (1555)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~--~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~ 250 (1555)
..++. ..++. .+++.++.-+.+. |.-||.-|+-.+..+.. +
T Consensus 190 ---------------------------------~S~~~-~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~--~ 232 (503)
T PF10508_consen 190 ---------------------------------HSPEA-AEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAE--T 232 (503)
T ss_pred ---------------------------------cCHHH-HHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHc--C
Confidence 01111 12222 4889999988884 89999999999999998 6
Q ss_pred HHHHHHhhhccchHHHHHHHHhc
Q 000409 251 AEMIQSLLSVTNISSFLAGVLAW 273 (1555)
Q Consensus 251 ~~~L~~vlk~~~isS~LAsiLss 273 (1555)
+..++.+.+..-+ ..|..++..
T Consensus 233 ~~g~~yL~~~gi~-~~L~~~l~~ 254 (503)
T PF10508_consen 233 PHGLQYLEQQGIF-DKLSNLLQD 254 (503)
T ss_pred hhHHHHHHhCCHH-HHHHHHHhc
Confidence 7777777776444 666777654
No 24
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=1.1 Score=58.00 Aligned_cols=210 Identities=16% Similarity=0.280 Sum_probs=122.4
Q ss_pred ChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHH--------------------------HHhhh---
Q 000409 9 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLD--------------------------ELCNH--- 59 (1555)
Q Consensus 9 ~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le--------------------------~L~~~--- 59 (1555)
.-+|++|+.|-+.++|++.|+-|..+|.+|..|++-.- |+.+| ++|..
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~---P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~ 212 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV---PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD 212 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC---chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH
Confidence 45799999999999999999999999999999976543 33322 23322
Q ss_pred ------hHHHHHHHHhcccCCCCCCc------ccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCC
Q 000409 60 ------GLVTQAATLISTSNSGGGQA------SLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSA 127 (1555)
Q Consensus 60 ------~Ll~~l~~LL~~~~~~~~~~------~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~ 127 (1555)
+++..++.+|-...+.+=++ +=.|=.+.++||+|.++-++-++.+..+ .+.|-|+.|....++
T Consensus 213 ~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M-----~DiLaqvatntdssk 287 (866)
T KOG1062|consen 213 ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLM-----NDILAQVATNTDSSK 287 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHH-----HHHHHHHHhcccccc
Confidence 13344444443211010011 1134457889999999999977766543 455666666544322
Q ss_pred CCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccC
Q 000409 128 NSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQ 207 (1555)
Q Consensus 128 ~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~ 207 (1555)
+... -=+||.+.-|-.+.|.-+--+...-... .|+.+. +.|-+...-..-..+++.+
T Consensus 288 N~Gn--------AILYE~V~TI~~I~~~~~LrvlainiLg-kFL~n~--------------d~NirYvaLn~L~r~V~~d 344 (866)
T KOG1062|consen 288 NAGN--------AILYECVRTIMDIRSNSGLRVLAINILG-KFLLNR--------------DNNIRYVALNMLLRVVQQD 344 (866)
T ss_pred cchh--------HHHHHHHHHHHhccCCchHHHHHHHHHH-HHhcCC--------------ccceeeeehhhHHhhhcCC
Confidence 2221 2278888877766663321111000000 011000 0011111122334455667
Q ss_pred hHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHH
Q 000409 208 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMI 254 (1555)
Q Consensus 208 pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L 254 (1555)
|..++|== .+.+++..-+ +.+||+++|-..++||.-.+-..+
T Consensus 345 ~~avqrHr----~tIleCL~Dp-D~SIkrralELs~~lvn~~Nv~~m 386 (866)
T KOG1062|consen 345 PTAVQRHR----STILECLKDP-DVSIKRRALELSYALVNESNVRVM 386 (866)
T ss_pred cHHHHHHH----HHHHHHhcCC-cHHHHHHHHHHHHHHhccccHHHH
Confidence 77777655 5566777666 999999999999999966554443
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.25 E-value=2.3 Score=49.53 Aligned_cols=218 Identities=19% Similarity=0.272 Sum_probs=149.4
Q ss_pred HHHHHHHhhhc-CCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHH
Q 000409 15 EAVPLLTNLLQ-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 93 (1555)
Q Consensus 15 e~~PiL~nvL~-~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~L 93 (1555)
+-|.-|..+|+ .+|+-+-|.|+.++... ..| |..=+-+.+.|.+.-|..+|... ++....+.+..|
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf---~~nq~~Ir~~Ggi~lI~~lL~~p---------~~~vr~~AL~aL 78 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNS-AAF---PFNQDIIRDLGGISLIGSLLNDP---------NPSVREKALNAL 78 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccC---hhHHHHHHHcCCHHHHHHHcCCC---------ChHHHHHHHHHH
Confidence 44566777777 56999999999999986 344 66667777889999999999654 466888999999
Q ss_pred HHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccC
Q 000409 94 STCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKG 173 (1555)
Q Consensus 94 s~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~ 173 (1555)
.+++......-+ ++.-|...+..++++... +.-| ...++++..| . +..
T Consensus 79 ~Nls~~~en~~~--Ik~~i~~Vc~~~~s~~ln------------s~~Q-~agLrlL~nL-t-v~~--------------- 126 (254)
T PF04826_consen 79 NNLSVNDENQEQ--IKMYIPQVCEETVSSPLN------------SEVQ-LAGLRLLTNL-T-VTN--------------- 126 (254)
T ss_pred HhcCCChhhHHH--HHHHHHHHHHHHhcCCCC------------CHHH-HHHHHHHHcc-C-CCc---------------
Confidence 999887666553 566677777777654221 1233 3456666633 0 000
Q ss_pred CcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHH
Q 000409 174 PVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEM 253 (1555)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~ 253 (1555)
+.-.++. .-+|-|+....+. +..+|..+|.++..+-+ +|++
T Consensus 127 --------------------------------~~~~~l~----~~i~~ll~LL~~G-~~~~k~~vLk~L~nLS~--np~~ 167 (254)
T PF04826_consen 127 --------------------------------DYHHMLA----NYIPDLLSLLSSG-SEKTKVQVLKVLVNLSE--NPDM 167 (254)
T ss_pred --------------------------------chhhhHH----hhHHHHHHHHHcC-ChHHHHHHHHHHHHhcc--CHHH
Confidence 0011122 2356666666665 78899999999999885 5899
Q ss_pred HHHhhhccchHHHHHHHHhcC-CCchHHHHHHHHHHHHHhChh---hH----------HHHHHHhc-HHHHHHHHhhcC
Q 000409 254 IQSLLSVTNISSFLAGVLAWK-DPHVLIPSLQIAEILMEKLPG---TF----------SKMFVREG-VVHAVDQLILAG 317 (1555)
Q Consensus 254 L~~vlk~~~isS~LAsiLss~-D~~lv~~ALqi~e~Ll~Klpd---~f----------~~~F~REG-V~~~I~~La~~~ 317 (1555)
.++++....+++|+ +++..+ +..+++.+|-+.+.|-+-... +| ...|+.++ ...++.+|+.|+
T Consensus 168 ~~~Ll~~q~~~~~~-~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 168 TRELLSAQVLSSFL-SLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHhccchhHHH-HHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 99999999998888 666665 577889999999999443321 12 25566666 344566777663
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.73 E-value=0.87 Score=58.23 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHH
Q 000409 9 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTG 88 (1555)
Q Consensus 9 ~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~ 88 (1555)
+-+++..++|.+.++|.+.++-|-..|+.|+.+|...+ |+.++. ++++.+.++|... ++.....
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~---p~~~~~----~~~~~l~~lL~d~---------~~~V~~~ 171 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD---PDLVED----ELIPKLKQLLSDK---------DPSVVSA 171 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---HCCHHG----GHHHHHHHHTTHS---------SHHHHHH
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---HHHHHH----HHHHHHhhhccCC---------cchhHHH
Confidence 45688899999999999999999999999999999885 554432 2678888999554 4557777
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcc
Q 000409 89 LIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSN 168 (1555)
Q Consensus 89 ~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~ 168 (1555)
.+.+|..+ +..+.....++ ..+...|.+++ +.. .+-....+++++..+.|..+
T Consensus 172 a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l-~~~-------------~~~~q~~il~~l~~~~~~~~----------- 224 (526)
T PF01602_consen 172 ALSLLSEI-KCNDDSYKSLI-PKLIRILCQLL-SDP-------------DPWLQIKILRLLRRYAPMEP----------- 224 (526)
T ss_dssp HHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHH-TCC-------------SHHHHHHHHHHHTTSTSSSH-----------
T ss_pred HHHHHHHH-ccCcchhhhhH-HHHHHHhhhcc-ccc-------------chHHHHHHHHHHHhcccCCh-----------
Confidence 78888777 44555533221 12233444444 111 11223456666664444211
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccC
Q 000409 169 MFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 248 (1555)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~ 248 (1555)
+.... ..+++.+....+ +.+..|...|..++.++...
T Consensus 225 ----------------------------------------~~~~~--~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 225 ----------------------------------------EDADK--NRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp ----------------------------------------HHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSS
T ss_pred ----------------------------------------hhhhH--HHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcc
Confidence 11100 122333333333 33677777777777755543
Q ss_pred CCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhC
Q 000409 249 SSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKL 293 (1555)
Q Consensus 249 ~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Kl 293 (1555)
. ..+.. +...|...|.+.|+.+-..||+.+..|..+.
T Consensus 262 ~--~~~~~------~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 262 P--ELLQK------AINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp H--HHHHH------HHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred h--HHHHh------hHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 1 22222 2356666667777666677777777777776
No 27
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=3.9 Score=52.75 Aligned_cols=210 Identities=18% Similarity=0.203 Sum_probs=135.2
Q ss_pred CCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhc----CChhhHHHHhhhh----HH-HHHHHHhcccCC---
Q 000409 7 SDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA----SSPDKLDELCNHG----LV-TQAATLISTSNS--- 74 (1555)
Q Consensus 7 ~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~----~~~~~Le~L~~~~----Ll-~~l~~LL~~~~~--- 74 (1555)
-++-+.+...+|.+...|.|--.=|--+|.+||.-|-..|- .-|+.++.....+ -. .+.+-|+ +..+
T Consensus 126 LkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~-~~D~ErA 204 (948)
T KOG1058|consen 126 LKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLF-TTDPERA 204 (948)
T ss_pred cCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHH-hcCHHHH
Confidence 45677899999999999999999999999999999887763 3477777665433 11 1222222 1100
Q ss_pred -------CCCCcccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCC----CCCCCcccCCChhhHH
Q 000409 75 -------GGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSA----NSAVPPALSRPAEQIF 143 (1555)
Q Consensus 75 -------~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~----~~~~~~~~~rp~eql~ 143 (1555)
-..=+.+++...+-++..+...|...|......++ .||.+|+..+... ..++. .+...++-|.
T Consensus 205 l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~-----~i~~lL~stssaV~fEaa~tlv-~lS~~p~alk 278 (948)
T KOG1058|consen 205 LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR-----CIYNLLSSTSSAVIFEAAGTLV-TLSNDPTALK 278 (948)
T ss_pred HHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH-----HHHHHHhcCCchhhhhhcceEE-EccCCHHHHH
Confidence 00002234555566666667777777776555544 5777886543211 11111 1444556666
Q ss_pred HHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhcc-ChHHHHHHHHhHHHHH
Q 000409 144 EIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD-QPELLQQFGMDLLPVL 222 (1555)
Q Consensus 144 evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~-~pe~~~~f~~~LlPvL 222 (1555)
...+-+..|+-.++..- .+-+...|+.-++. +...++.+++++|++|
T Consensus 279 ~Aa~~~i~l~~kesdnn--------------------------------vklIvldrl~~l~~~~~~il~~l~mDvLrvL 326 (948)
T KOG1058|consen 279 AAASTYIDLLVKESDNN--------------------------------VKLIVLDRLSELKALHEKILQGLIMDVLRVL 326 (948)
T ss_pred HHHHHHHHHHHhccCcc--------------------------------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc
Confidence 66665555555444311 12244566666653 4556788888888876
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhc
Q 000409 223 IQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV 260 (1555)
Q Consensus 223 i~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~ 260 (1555)
++-+.+||+|||...+.+++.-+-+.+..+|+.
T Consensus 327 -----ss~dldvr~Ktldi~ldLvssrNvediv~~Lkk 359 (948)
T KOG1058|consen 327 -----SSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKK 359 (948)
T ss_pred -----CcccccHHHHHHHHHHhhhhhccHHHHHHHHHH
Confidence 677999999999999999999999999888766
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.06 E-value=1.1 Score=57.46 Aligned_cols=188 Identities=24% Similarity=0.266 Sum_probs=125.4
Q ss_pred hhhHHH-HHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHH
Q 000409 10 ADFVME-AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTG 88 (1555)
Q Consensus 10 F~~V~e-~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~ 88 (1555)
.+.+.+ .+|.|.++|...|+.|+-.|+.+++-| +..++... -+-+.+++.+.++|... ++-....
T Consensus 146 p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i----~~~~~~~~-~~~~~~~~~L~~~l~~~---------~~~~q~~ 211 (526)
T PF01602_consen 146 PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI----KCNDDSYK-SLIPKLIRILCQLLSDP---------DPWLQIK 211 (526)
T ss_dssp HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH----HCTHHHHT-THHHHHHHHHHHHHTCC---------SHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH----ccCcchhh-hhHHHHHHHhhhccccc---------chHHHHH
Confidence 345666 599999999999999999999999999 33333322 33356777777777332 6678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcc
Q 000409 89 LIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSN 168 (1555)
Q Consensus 89 ~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~ 168 (1555)
+|++|..++...+..... ..+.+.+..+|.. ....-++|++++|..+-|.
T Consensus 212 il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s--------------~~~~V~~e~~~~i~~l~~~------------- 261 (526)
T PF01602_consen 212 ILRLLRRYAPMEPEDADK---NRIIEPLLNLLQS--------------SSPSVVYEAIRLIIKLSPS------------- 261 (526)
T ss_dssp HHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHSSS-------------
T ss_pred HHHHHHhcccCChhhhhH---HHHHHHHHHHhhc--------------cccHHHHHHHHHHHHhhcc-------------
Confidence 999999999999988843 3344455555541 1234468899888855441
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccC
Q 000409 169 MFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 248 (1555)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~ 248 (1555)
+. ++..+++.|+....++ +..||+-+|..|..++..
T Consensus 262 ---------------------------------------~~----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 262 ---------------------------------------PE----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp ---------------------------------------HH----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCH
T ss_pred ---------------------------------------hH----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcc
Confidence 11 3456678888888844 888999999999888876
Q ss_pred CCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 000409 249 SSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK 292 (1555)
Q Consensus 249 ~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~K 292 (1555)
. +..+ .. ..-.+-.+....|..+..-+|.++-.|..+
T Consensus 298 ~-~~~v----~~--~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 298 N-PPAV----FN--QSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp C-HHHH----GT--HHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred c-chhh----hh--hhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 5 2222 21 111222334466777777777777666653
No 29
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.09 E-value=11 Score=47.11 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=75.3
Q ss_pred HHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHH
Q 000409 210 LLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEIL 289 (1555)
Q Consensus 210 ~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~L 289 (1555)
.=+||...++|.|++-|.++-+. +|.-+|.|+.-++.+++.+.+..=+.. +-.+|-.-|+..|..+...+|++...+
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMI 392 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999544 999999999999999998777665544 334566667888888999999999999
Q ss_pred HHhChhhHHHHHH
Q 000409 290 MEKLPGTFSKMFV 302 (1555)
Q Consensus 290 l~Klpd~f~~~F~ 302 (1555)
++..|+.+..|+.
T Consensus 393 l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 393 LEEAPELISEHLS 405 (415)
T ss_pred HHcCHHHHHHHHH
Confidence 9999999888765
No 30
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.52 E-value=14 Score=44.41 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=140.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhh---hhHHHHHHHHhcccCCCCCCcccCchhHHHHHH
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN---HGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 91 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~---~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr 91 (1555)
=.+.+|.++ +++..+|..++..|.-++..-..-.+.+..+.. ......+++++... +.-+.....+
T Consensus 59 ~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---------D~~i~~~a~~ 127 (312)
T PF03224_consen 59 LFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---------DSFIQLKAAF 127 (312)
T ss_dssp ---HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---------SHHHHHHHHH
T ss_pred HHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---------CHHHHHHHHH
Confidence 334444444 679999999999988888776444444444443 23677788866433 5567788999
Q ss_pred HHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccc
Q 000409 92 LLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFV 171 (1555)
Q Consensus 92 ~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~ 171 (1555)
+|+.++..++.-....- .++...+.+.|.....+. +.+..+-++..+++||- .
T Consensus 128 iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~----------~~~~~~~av~~L~~LL~-~--------------- 180 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSS----------DSELQYIAVQCLQNLLR-S--------------- 180 (312)
T ss_dssp HHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HH----------HH---HHHHHHHHHHHT-S---------------
T ss_pred HHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCC----------CcchHHHHHHHHHHHhC-c---------------
Confidence 99999888877666543 344466667775522110 12223556666676653 1
Q ss_pred cCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHH------hcCCChHHHHHHHHHHHHH
Q 000409 172 KGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIY------GSSVNSPVRHKCLSVIGKL 245 (1555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy------~ssv~~~VR~k~L~ailk~ 245 (1555)
..-|.-+.+ ...++.|+++. .++.+..+-|+++-++- +
T Consensus 181 -------------------------~~~R~~f~~----------~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW-l 224 (312)
T PF03224_consen 181 -------------------------KEYRQVFWK----------SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW-L 224 (312)
T ss_dssp -------------------------HHHHHHHHT----------HHHHHHHHHHHH---------HHHHHHHHHHHHH-H
T ss_pred -------------------------chhHHHHHh----------cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH-H
Confidence 122333322 34456666666 78889999999887764 5
Q ss_pred ccCCCHHHHHHhhhccchHHHHHHHHhc-CCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 246 MYFSSAEMIQSLLSVTNISSFLAGVLAW-KDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 246 v~~~~~~~L~~vlk~~~isS~LAsiLss-~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
++| +++...++.+.. +-..|+.++.. .-..++-.+|-+...|+++.++.+.....--|+..-++.|..+
T Consensus 225 LSF-~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 225 LSF-EPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HTT-SHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred Hhc-CHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 556 567777777776 66778877753 4457999999999999999999999999999999999999875
No 31
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.27 E-value=0.37 Score=39.66 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHh
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAE 44 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvd 44 (1555)
.++|.|.++|.+.|+.|.+.||+|+..|+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 469999999999999999999999999873
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.09 E-value=14 Score=44.50 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchh---HHHHHHH
Q 000409 16 AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPT---YTGLIRL 92 (1555)
Q Consensus 16 ~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t---~~~~Lr~ 92 (1555)
.+..+-+.++++|.-+.+.||-+++.|+..-........ .+++..+++.|... ++... ...++++
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~----~~~l~~ll~~L~~~--------l~~~~~~~~~~av~~ 173 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV----KEALPKLLQWLSSQ--------LSSSDSELQYIAVQC 173 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH----HHHHHHHHHHHH-T--------T-HHHH---HHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH----HHHHHHHHHHHHHh--------hcCCCcchHHHHHHH
Confidence 455666699999999999999999999987744444333 56778888888542 12222 2678899
Q ss_pred HHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcccccc
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVK 172 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~ 172 (1555)
|..+. .++..-..+.+.+.+..|..+|.......+. -.-+..|+++-.|=-| = |
T Consensus 174 L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~-------~~~Ql~Y~~ll~lWlL-S------F----------- 227 (312)
T PF03224_consen 174 LQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNS-------SGIQLQYQALLCLWLL-S------F----------- 227 (312)
T ss_dssp HHHHH-TSHHHHHHHHTHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH-T------T-----------
T ss_pred HHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCC-------CchhHHHHHHHHHHHH-h------c-----------
Confidence 99987 5688889999999999999999422111101 1346667777533311 1 1
Q ss_pred CCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHH-HhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCH
Q 000409 173 GPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSA 251 (1555)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~-~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~ 251 (1555)
+++.+..|. ..++|.|+++...+.--.|=|=||.++.+++.....
T Consensus 228 ----------------------------------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 228 ----------------------------------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ----------------------------------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred ----------------------------------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 111111110 228999999999999888888888888888887765
Q ss_pred H
Q 000409 252 E 252 (1555)
Q Consensus 252 ~ 252 (1555)
.
T Consensus 274 ~ 274 (312)
T PF03224_consen 274 S 274 (312)
T ss_dssp T
T ss_pred H
Confidence 5
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=89.50 E-value=23 Score=47.51 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=44.6
Q ss_pred HhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhH
Q 000409 226 YGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF 297 (1555)
Q Consensus 226 y~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f 297 (1555)
|...++..++++++.+|.++..-. +.....++ .+|..++..+. .++..++..++.|++|.|+.|
T Consensus 376 Ya~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV------~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~~ 439 (746)
T PTZ00429 376 YASGVDMVFVVEVVRAIASLAIKV-DSVAPDCA------NLLLQIVDRRP-ELLPQVVTAAKDIVRKYPELL 439 (746)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHH------HHHHHHhcCCc-hhHHHHHHHHHHHHHHCccHH
Confidence 777888999999999998886322 33333333 45556665443 356678999999999999854
No 34
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.08 E-value=26 Score=46.62 Aligned_cols=194 Identities=20% Similarity=0.266 Sum_probs=133.4
Q ss_pred HHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHh
Q 000409 41 RIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDIL 120 (1555)
Q Consensus 41 rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iL 120 (1555)
+++-+...++..++.++. +.|..|+.++.... +.....-||.+|+++...+..-++.|-+.++++.|..+|
T Consensus 472 KlIRNiS~h~~~~k~~f~-~~i~~L~~~v~~~~--------~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L 542 (708)
T PF05804_consen 472 KLIRNISQHDGPLKELFV-DFIGDLAKIVSSGD--------SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLL 542 (708)
T ss_pred HHHHHHHhcCchHHHHHH-HHHHHHHHHhhcCC--------cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHh
Confidence 445555445556888874 78888888885542 556788999999999988888888888899999999999
Q ss_pred cCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhH
Q 000409 121 SGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAR 200 (1555)
Q Consensus 121 tg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 200 (1555)
.... ..++.+.|++-+++.+- .-|.
T Consensus 543 ~~g~------------~~dDl~LE~Vi~~gtla-~d~~------------------------------------------ 567 (708)
T PF05804_consen 543 KPGA------------SEDDLLLEVVILLGTLA-SDPE------------------------------------------ 567 (708)
T ss_pred CCCC------------CChHHHHHHHHHHHHHH-CCHH------------------------------------------
Confidence 4211 13577888887777221 0000
Q ss_pred HhhhccChHHHHHHHHhHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchH
Q 000409 201 EKLLSDQPELLQQFGMDLLPVLIQIYGSSV-NSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVL 279 (1555)
Q Consensus 201 ~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv-~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv 279 (1555)
+-.++. -..+.+.|++++.+-- |-.+=-.++-+.++++.+ ++.-..+++..-+...|-..+-.+...+-
T Consensus 568 ------~A~lL~--~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir 637 (708)
T PF05804_consen 568 ------CAPLLA--KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIR 637 (708)
T ss_pred ------HHHHHH--hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHH
Confidence 001111 0356788888877664 467777889999999998 55666777877777777777777776666
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHhcHHHH
Q 000409 280 IPSLQIAEILMEKLPGTFSKMFVREGVVHA 309 (1555)
Q Consensus 280 ~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~ 309 (1555)
-.|=.+..++++--++ |....++|-.-..
T Consensus 638 ~~~d~~Ldii~e~d~~-w~~ri~~~kF~~h 666 (708)
T PF05804_consen 638 KVCDNALDIIAEYDEE-WAERIRREKFRWH 666 (708)
T ss_pred HHHHHHHHHHHHhCHH-HHHHhhHHHHHHH
Confidence 6666677777776654 6666666654443
No 35
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=87.49 E-value=0.46 Score=55.62 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHH
Q 000409 14 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 93 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~L 93 (1555)
+.+++.+..+|.+.-+++-.-|||.++.|..+- .++++.+++.+|++-++.||+..+-+ +--..|-.+....
T Consensus 326 ~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn---teqiqavid~nliPpLi~lls~ae~k-----~kKEACWAisNat 397 (526)
T COG5064 326 CGALKAFRSLLSSPKENIRKEACWTISNITAGN---TEQIQAVIDANLIPPLIHLLSSAEYK-----IKKEACWAISNAT 397 (526)
T ss_pred cccHHHHHHHhcChhhhhhhhhheeecccccCC---HHHHHHHHhcccchHHHHHHHHHHHH-----HHHHHHHHHHhhh
Confidence 356788888899999999999999999999884 89999999999999999999643211 1222333333333
Q ss_pred HHHhcCCHHHHHHHHhcCchhHHHHHhcCCC
Q 000409 94 STCASGSPLCAKTLLHLGISGILKDILSGSG 124 (1555)
Q Consensus 94 s~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~ 124 (1555)
+- |-.-|.+.+.|+..|..+.|+.+|.++.
T Consensus 398 sg-g~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 398 SG-GLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred cc-ccCCchHHHHHHHccchhHHHHHHhccC
Confidence 33 6667999999999999999999997644
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=18 Score=43.62 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHH
Q 000409 9 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTG 88 (1555)
Q Consensus 9 ~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~ 88 (1555)
+|....-..|.|. .|++.|..|-+.|.+.|.-++. ++|.--+.+++.+.++.|+++|.... +-...++
T Consensus 119 dl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~q---NNP~~Qe~v~E~~~L~~Ll~~ls~~~--------~~~~r~k 186 (342)
T KOG2160|consen 119 DLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQ---NNPKSQEQVIELGALSKLLKILSSDD--------PNTVRTK 186 (342)
T ss_pred hHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHh---cCHHHHHHHHHcccHHHHHHHHccCC--------CchHHHH
Confidence 3444444556666 9999999999999998877665 56999999999999999999997431 2235589
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcc
Q 000409 89 LIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSN 168 (1555)
Q Consensus 89 ~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~ 168 (1555)
+|-.++.+-+.-+-....+++.+=...|...|..- +++ ...-.-++.||..|+-.-+.
T Consensus 187 aL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~----~~~--------~~lkrK~~~Ll~~Ll~~~~s---------- 244 (342)
T KOG2160|consen 187 ALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN----NTS--------VKLKRKALFLLSLLLQEDKS---------- 244 (342)
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC----Ccc--------hHHHHHHHHHHHHHHHhhhh----------
Confidence 99999999999999999999955466777777321 111 12234567777766542110
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccC
Q 000409 169 MFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 248 (1555)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~ 248 (1555)
+.+ .+-...|+..++.|.++-..+++..++.+++..++-
T Consensus 245 --------------------------------------~~d---~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 245 --------------------------------------DED---IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred --------------------------------------hhh---HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 000 122456889999999999999999999999988865
Q ss_pred C
Q 000409 249 S 249 (1555)
Q Consensus 249 ~ 249 (1555)
-
T Consensus 284 ~ 284 (342)
T KOG2160|consen 284 L 284 (342)
T ss_pred H
Confidence 3
No 37
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.65 E-value=65 Score=39.11 Aligned_cols=213 Identities=19% Similarity=0.217 Sum_probs=129.6
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHH
Q 000409 24 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 103 (1555)
Q Consensus 24 L~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~l 103 (1555)
.+..|..=.|-|.==+-.+|+.+ ++=..|++.|.+.-++..|.++ .+..--...++++++++..|.+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~i----DnAndl~~~ggl~~ll~~l~~~---------~~~lR~~Aa~Vigt~~qNNP~~ 158 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDI----DNANDLISLGGLVPLLGYLENS---------DAELRELAARVIGTAVQNNPKS 158 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhh----hhHHhHhhccCHHHHHHHhcCC---------cHHHHHHHHHHHHHHHhcCHHH
Confidence 35668887787777777778777 5566788888777777777443 4556677899999999999999
Q ss_pred HHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCC
Q 000409 104 AKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASS 183 (1555)
Q Consensus 104 s~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1555)
-..+++.|....|..+|+...+ .++-..=++.+-+||-.-.|
T Consensus 159 Qe~v~E~~~L~~Ll~~ls~~~~---------~~~r~kaL~AissLIRn~~~----------------------------- 200 (342)
T KOG2160|consen 159 QEQVIELGALSKLLKILSSDDP---------NTVRTKALFAISSLIRNNKP----------------------------- 200 (342)
T ss_pred HHHHHHcccHHHHHHHHccCCC---------chHHHHHHHHHHHHHhcCcH-----------------------------
Confidence 9999999999999999974332 11112224555544441111
Q ss_pred CCCCCCCCCCccchhhHHhhhccChHHHHHHH-HhHHHHHHHHHhcC-CChHHHHHHHHHHHHHccCC--CHHHHHHhhh
Q 000409 184 SGKQDDTNGNASEVSAREKLLSDQPELLQQFG-MDLLPVLIQIYGSS-VNSPVRHKCLSVIGKLMYFS--SAEMIQSLLS 259 (1555)
Q Consensus 184 ~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~-~~LlPvLi~vy~ss-v~~~VR~k~L~ailk~v~~~--~~~~L~~vlk 259 (1555)
-..+|. -.=+-+|++||++- .+...++|++-.+..++.-. +.+......-
T Consensus 201 --------------------------g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 201 --------------------------GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred --------------------------HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 111111 11178899999993 68889999999988887542 2222222222
Q ss_pred ccchHHHHHHHHhcC-CCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhh
Q 000409 260 VTNISSFLAGVLAWK-DPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 260 ~~~isS~LAsiLss~-D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~ 315 (1555)
...+ -.+.+.+... .-..+...|..+..+-.+- .+|......|-.++.-.++..
T Consensus 255 ~~~~-~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~-~~~~~~~~l~e~l~~~~q~~~ 309 (342)
T KOG2160|consen 255 QRVL-ENLISSLDFEVNEAALTALLSLLSELSTRK-ELFVSLLNLEELLKSLIQIIS 309 (342)
T ss_pred hHHH-HHHhhccchhhhHHHHHHHHHHHHHHhhcc-hhhhhhhhHHHHHHHHHHHHH
Confidence 2222 2222222222 1234444444444443333 666666655656655444443
No 38
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=86.59 E-value=21 Score=47.42 Aligned_cols=240 Identities=18% Similarity=0.229 Sum_probs=145.3
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHH
Q 000409 14 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 93 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~L 93 (1555)
.+++|-|..++.+.+..+++.++.++..+ ..+++.-..+++.|+|+.++.||... +...-++++|
T Consensus 330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NL----Sfd~~~R~~mV~~GlIPkLv~LL~d~-----------~~~~val~iL 394 (708)
T PF05804_consen 330 SGIVEKLLKLLPSENEDLVNVALRLLFNL----SFDPELRSQMVSLGLIPKLVELLKDP-----------NFREVALKIL 394 (708)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHh----CcCHHHHHHHHHCCCcHHHHHHhCCC-----------chHHHHHHHH
Confidence 36889999999999999999988666554 55788999999999999999999432 2334578888
Q ss_pred HHHhcCCHHHHHHHHh-cCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHH---------HHHh--hCCCCCCCCc
Q 000409 94 STCASGSPLCAKTLLH-LGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN---------LANE--LLPPLPQGTI 161 (1555)
Q Consensus 94 s~la~~Sp~ls~~Ll~-~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~---------LI~e--LLP~lP~~~~ 161 (1555)
..+|.. .+ ++.++. .+.++.|.++|...+... + ..+.+.-+++ +|++ -||.+-+..+
T Consensus 395 y~LS~d-d~-~r~~f~~TdcIp~L~~~Ll~~~~~~---v------~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~ 463 (708)
T PF05804_consen 395 YNLSMD-DE-ARSMFAYTDCIPQLMQMLLENSEEE---V------QLELIALLINLALNKRNAQLMCEGNGLQSLMKRAL 463 (708)
T ss_pred HHhccC-Hh-hHHHHhhcchHHHHHHHHHhCCCcc---c------cHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHH
Confidence 887773 33 444554 677788877774433211 1 1111111111 1111 0110000000
Q ss_pred cCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhcc---Ch-HHHHHHHHhHHHHHHHHHhcCCChHHHHH
Q 000409 162 SLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD---QP-ELLQQFGMDLLPVLIQIYGSSVNSPVRHK 237 (1555)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~---~p-e~~~~f~~~LlPvLi~vy~ssv~~~VR~k 237 (1555)
+ ...+.. .+++++ ++ ..-..|+ ..+.-|+.+....=+.+.--.
T Consensus 464 ----------~-------------------~~D~lL---lKlIRNiS~h~~~~k~~f~-~~i~~L~~~v~~~~~ee~~vE 510 (708)
T PF05804_consen 464 ----------K-------------------TRDPLL---LKLIRNISQHDGPLKELFV-DFIGDLAKIVSSGDSEEFVVE 510 (708)
T ss_pred ----------h-------------------cccHHH---HHHHHHHHhcCchHHHHHH-HHHHHHHHHhhcCCcHHHHHH
Confidence 0 000010 112222 22 2222333 333444555566668899999
Q ss_pred HHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcC--CCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhh
Q 000409 238 CLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWK--DPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 238 ~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~--D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~ 315 (1555)
||.++.++... ...-..++++.++--+|..+|... ++.+++.+..++-.+. ..+.-...+.+.|++..+-.|..
T Consensus 511 ~LGiLaNL~~~--~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~LL~ 586 (708)
T PF05804_consen 511 CLGILANLTIP--DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA--SDPECAPLLAKSGLIPTLIELLN 586 (708)
T ss_pred HHHHHHhcccC--CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHHHH
Confidence 99999998864 236677888888889999999642 2345555555444433 23346888889999998888875
Q ss_pred c
Q 000409 316 A 316 (1555)
Q Consensus 316 ~ 316 (1555)
.
T Consensus 587 ~ 587 (708)
T PF05804_consen 587 A 587 (708)
T ss_pred h
Confidence 3
No 39
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.29 E-value=1.5e+02 Score=40.97 Aligned_cols=271 Identities=15% Similarity=0.144 Sum_probs=146.2
Q ss_pred CCChhhHHHHHHHHHhh----hcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccC
Q 000409 7 SDAADFVMEAVPLLTNL----LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLS 82 (1555)
Q Consensus 7 ~~~F~~V~e~~PiL~nv----L~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls 82 (1555)
.+.++.+++.+|.+-|+ ++..|.+....+.-||.-++++. |..|-.-++ .+|+-.+++..+. .+.
T Consensus 194 ~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~---pk~l~~~l~-~ii~~~l~Ia~n~-------~l~ 262 (1075)
T KOG2171|consen 194 KSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE---PKLLRPHLS-QIIQFSLEIAKNK-------ELE 262 (1075)
T ss_pred hHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc---hHHHHHHHH-HHHHHHHHHhhcc-------ccc
Confidence 56788899999977766 56778887888888888888887 554444432 3444444555332 378
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHH--hcCchhHHHHHhcCCCCCC---C-CCCC-cccCCChhhHHHHHHHHHhhCCC
Q 000409 83 TPTYTGLIRLLSTCASGSPLCAKTLL--HLGISGILKDILSGSGVSA---N-SAVP-PALSRPAEQIFEIVNLANELLPP 155 (1555)
Q Consensus 83 ~~t~~~~Lr~Ls~la~~Sp~ls~~Ll--~~~i~~tL~~iLtg~~~~~---~-~~~~-~~~~rp~eql~evl~LI~eLLP~ 155 (1555)
..+-...|..|..++..-|.-.+-+= -.-++.++..+.|-...-. + .... .--..|+.--.+++..+.-=||+
T Consensus 263 ~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh
Confidence 88889999999998888554443322 2334444444444322110 0 0000 00111222223333322211111
Q ss_pred CCCCCccCCC---------CccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHH
Q 000409 156 LPQGTISLPS---------SSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIY 226 (1555)
Q Consensus 156 lP~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy 226 (1555)
+-++. +. ..+|..|. ..--.--..-.+|++.+..-+..++|..+.-.
T Consensus 343 --~~v~p-~~~~~l~~~l~S~~w~~R~---------------------AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 343 --KQVLP-PLFEALEAMLQSTEWKERH---------------------AALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred --hhehH-HHHHHHHHHhcCCCHHHHH---------------------HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 01110 00 00010000 00000111225688888888888888888877
Q ss_pred hcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhc-CCCchHHHHHHHHHHHHHhC-hhhH---H---
Q 000409 227 GSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAW-KDPHVLIPSLQIAEILMEKL-PGTF---S--- 298 (1555)
Q Consensus 227 ~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss-~D~~lv~~ALqi~e~Ll~Kl-pd~f---~--- 298 (1555)
+.. .+.||+.++.||.-|-.-..|+.-+.--..++- .|+.++.+ +.+++...|--.+..+.+.+ .+++ +
T Consensus 399 ~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~--aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 399 NDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP--ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred CCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH--HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 766 899999999999999887777766655444432 23444444 33444444433333333333 2332 2
Q ss_pred ------------HHHHHhcHHHHHHHHhh
Q 000409 299 ------------KMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 299 ------------~~F~REGV~~~I~~La~ 315 (1555)
+.-.||+|+..|-..|.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 22346777777777765
No 40
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.85 E-value=15 Score=47.51 Aligned_cols=145 Identities=15% Similarity=0.262 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHH
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 90 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~L 90 (1555)
+..||..+-+-++|+++-+=|--.|.+.++||...| ||-|..= ++++..=|-+. .++.....+
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY---PeAlr~~-----FprL~EkLeDp---------Dp~V~SAAV 202 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY---PEALRPC-----FPRLVEKLEDP---------DPSVVSAAV 202 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh---hHhHhhh-----HHHHHHhccCC---------CchHHHHHH
Confidence 578999999999999999999999999999999999 6665433 34555555444 455777777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCcccc
Q 000409 91 RLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMF 170 (1555)
Q Consensus 91 r~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~ 170 (1555)
.++.-||+-.|+=-. -+++.+|.+||.+.. ++ -+.-+++|-+.|-|-.|+
T Consensus 203 ~VICELArKnPknyL-----~LAP~ffkllttSsN--NW-----------mLIKiiKLF~aLtplEPR------------ 252 (877)
T KOG1059|consen 203 SVICELARKNPQNYL-----QLAPLFYKLLVTSSN--NW-----------VLIKLLKLFAALTPLEPR------------ 252 (877)
T ss_pred HHHHHHHhhCCcccc-----cccHHHHHHHhccCC--Ce-----------ehHHHHHHHhhccccCch------------
Confidence 788888887776433 358899999987552 11 157799999999886663
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000409 171 VKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKL 245 (1555)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~ 245 (1555)
+++.|+|-|++...||+--++=|.|+..+...
T Consensus 253 -------------------------------------------LgKKLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 253 -------------------------------------------LGKKLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred -------------------------------------------hhhhhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 34678999999999999999999999888765
No 41
>PF05536 Neurochondrin: Neurochondrin
Probab=84.35 E-value=20 Score=46.47 Aligned_cols=170 Identities=22% Similarity=0.267 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHhhhcCCCh-hHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHH
Q 000409 11 DFVMEAVPLLTNLLQYHDA-KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 89 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~-~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~ 89 (1555)
+.+-+-+|.|.+++.+.+. .+++.++.|++.|+ +. |+--+.|++.|.++.+.+.+... +...=..
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~---~~G~~aLl~~g~v~~L~ei~~~~----------~~~~E~A 159 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SS---PEGAKALLESGAVPALCEIIPNQ----------SFQMEIA 159 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cC---cHhHHHHHhcCCHHHHHHHHHhC----------cchHHHH
Confidence 5677889999999877776 99999999999999 54 88999999999999999999552 2234456
Q ss_pred HHHHHHHhcCCHHHHH---HHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCC
Q 000409 90 IRLLSTCASGSPLCAK---TLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSS 166 (1555)
Q Consensus 90 Lr~Ls~la~~Sp~ls~---~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~ 166 (1555)
+.+|..+++....-+. .-.-..|+..|...+... ..+.=.+++.++..+||+.|.....
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~--------------~~~~kfell~~L~~~L~~~~~~~~~---- 221 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF--------------HGEDKFELLEFLSAFLPRSPILPLE---- 221 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh--------------ccchHHHHHHHHHHhcCcCCccccc----
Confidence 6666666654442111 111123445555555321 1223478899999999987521000
Q ss_pred ccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 000409 167 SNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLM 246 (1555)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v 246 (1555)
.. . .+ .-...+..-|.++.+|-+.+.-|..+|.+..-|+
T Consensus 222 -----------------~~----------~----------~~----~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 222 -----------------SP----------P----------SP----KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred -----------------cC----------C----------hh----hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00 0 01 1235777888899999999999999999998888
Q ss_pred cCCCHHH
Q 000409 247 YFSSAEM 253 (1555)
Q Consensus 247 ~~~~~~~ 253 (1555)
...-++-
T Consensus 261 ~~~G~~w 267 (543)
T PF05536_consen 261 DLLGPEW 267 (543)
T ss_pred HHhChHh
Confidence 7644443
No 42
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=80.61 E-value=1.7 Score=35.05 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHH
Q 000409 16 AVPLLTNLLQYHDAKVLEHASVCLTRIA 43 (1555)
Q Consensus 16 ~~PiL~nvL~~~D~~vvE~a~~c~~rIv 43 (1555)
++|.|..+|++.|.++++.||+|+..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6999999999999999999999999886
No 43
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=79.83 E-value=5 Score=52.32 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=85.5
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHH
Q 000409 14 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 93 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~L 93 (1555)
+..+|.|..+|...|+.||..+|.++-.+.-.- ...+|+....++.+++.|..++ +...++..|...++..|
T Consensus 565 ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~-----rnk~ligk~a~~~lv~~Lp~~~---~~~~~sedtv~~vc~tl 636 (717)
T KOG1048|consen 565 EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI-----RNKELIGKYAIPDLVRCLPGSG---PSTSLSEDTVRAVCHTL 636 (717)
T ss_pred ccCccHHHHHHhcCCchHHHHHHHHHhhhccCc-----hhhhhhhcchHHHHHHhCcCCC---CCcCchHHHHHHHHHhH
Confidence 345799999999999999999999998776554 5667777889999999996552 34567889999999999
Q ss_pred HHHhcCCHHHHHHHHhcCchhHHHHHhcC
Q 000409 94 STCASGSPLCAKTLLHLGISGILKDILSG 122 (1555)
Q Consensus 94 s~la~~Sp~ls~~Ll~~~i~~tL~~iLtg 122 (1555)
..+.+.++.-++.|++.+=.+.|.-|.-+
T Consensus 637 ~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 637 NNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred HHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 99999999999999998878888877755
No 44
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.60 E-value=44 Score=37.80 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHH
Q 000409 10 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 89 (1555)
Q Consensus 10 F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~ 89 (1555)
+..++++++.|...++..=.+|+-.||.|+..++..+++ .++..++ .+++.|+..+..+ ..-+....
T Consensus 48 ~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~---~~~~~~~-~~l~~Ll~~~~~~---------~~~i~~~a 114 (228)
T PF12348_consen 48 VECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS---HFEPYAD-ILLPPLLKKLGDS---------KKFIREAA 114 (228)
T ss_dssp HHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG---GGHHHHH-HHHHHHHHGGG------------HHHHHHH
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH---hHHHHHH-HHHHHHHHHHccc---------cHHHHHHH
Confidence 344555556777777777788999999999999999954 3666643 6788888888554 22345566
Q ss_pred HHHHHHHhcCCH
Q 000409 90 IRLLSTCASGSP 101 (1555)
Q Consensus 90 Lr~Ls~la~~Sp 101 (1555)
-.+|..++..++
T Consensus 115 ~~~L~~i~~~~~ 126 (228)
T PF12348_consen 115 NNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHTTS-
T ss_pred HHHHHHHHHHCC
Confidence 667777777665
No 45
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.89 E-value=26 Score=41.06 Aligned_cols=170 Identities=17% Similarity=0.232 Sum_probs=107.2
Q ss_pred hhHHH--HHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHH
Q 000409 11 DFVME--AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTG 88 (1555)
Q Consensus 11 ~~V~e--~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~ 88 (1555)
+.|++ .+|++.++|.+.|++|-++|++|+..+..+..+ ..+++ ..+.++++.+.... +.+.....
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en-~~~Ik-----~~i~~Vc~~~~s~~-------lns~~Q~a 114 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN-QEQIK-----MYIPQVCEETVSSP-------LNSEVQLA 114 (254)
T ss_pred HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh-HHHHH-----HHHHHHHHHHhcCC-------CCCHHHHH
Confidence 34443 689999999999999999999999988777522 22333 24677777664431 35567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCchhHHHHHh-cCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCc
Q 000409 89 LIRLLSTCASGSPLCAKTLLHLGISGILKDIL-SGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSS 167 (1555)
Q Consensus 89 ~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iL-tg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~ 167 (1555)
.||+|.+|+..... +.++...|. .+..+| +|+.. .+ .++++++..| +
T Consensus 115 gLrlL~nLtv~~~~--~~~l~~~i~-~ll~LL~~G~~~------------~k---~~vLk~L~nL---------S----- 162 (254)
T PF04826_consen 115 GLRLLTNLTVTNDY--HHMLANYIP-DLLSLLSSGSEK------------TK---VQVLKVLVNL---------S----- 162 (254)
T ss_pred HHHHHHccCCCcch--hhhHHhhHH-HHHHHHHcCChH------------HH---HHHHHHHHHh---------c-----
Confidence 99999999755322 455544444 456666 34221 11 3455544411 0
Q ss_pred cccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHH-HHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 000409 168 NMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQ-FGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLM 246 (1555)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~-f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v 246 (1555)
.+|.+.+. +....++-|+..|......++-..+|+.+-++.
T Consensus 163 --------------------------------------~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 163 --------------------------------------ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred --------------------------------------cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 12222111 123456788899999999999999999999997
Q ss_pred cCCCHHHHHHhhhccch
Q 000409 247 YFSSAEMIQSLLSVTNI 263 (1555)
Q Consensus 247 ~~~~~~~L~~vlk~~~i 263 (1555)
.+..++....+....+.
T Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (254)
T PF04826_consen 205 ENIKKEAYVFVQDDFSE 221 (254)
T ss_pred HhhCcccceeccccCCc
Confidence 66665544333333333
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=75.97 E-value=2.1e+02 Score=36.20 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=66.6
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHH
Q 000409 16 AVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLST 95 (1555)
Q Consensus 16 ~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~ 95 (1555)
.+-.+-++|+.+|+-+++.+|.+++.++.. . +...+.....-++.-+..+|.... +......++++|..
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~-~--~~~~~~~~l~~~~~~l~~~l~~~~--------~~~~~~~~v~~L~~ 170 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACF-G--LAKMEGSDLDYYFNWLKEQLNNIT--------NNDYVQTAARCLQM 170 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhc-C--ccccchhHHHHHHHHHHHHhhccC--------CcchHHHHHHHHHH
Confidence 344444578899999999999999999742 1 222222122224445555553221 23344556788888
Q ss_pred HhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHH
Q 000409 96 CASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNL 148 (1555)
Q Consensus 96 la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~L 148 (1555)
|.+.. ..=..+.+.+.+..|..+|.... .+-+.+|+++=.
T Consensus 171 LL~~~-~~R~~f~~~~~v~~L~~~L~~~~------------~~~Ql~Y~~ll~ 210 (429)
T cd00256 171 LLRVD-EYRFAFVLADGVPTLVKLLSNAT------------LGFQLQYQSIFC 210 (429)
T ss_pred HhCCc-hHHHHHHHccCHHHHHHHHhhcc------------ccHHHHHHHHHH
Confidence 87763 33345557778899999995422 145777887753
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.81 E-value=40 Score=43.96 Aligned_cols=196 Identities=17% Similarity=0.256 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHH
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 90 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~L 90 (1555)
+.++.+||-|..-|.-.|+-|+-.|...||-++- ++|..-=.| -+-+..||.++.++ | ..+++|
T Consensus 177 eAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr---KnPknyL~L-----AP~ffkllttSsNN--W------mLIKii 240 (877)
T KOG1059|consen 177 EALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR---KNPQNYLQL-----APLFYKLLVTSSNN--W------VLIKLL 240 (877)
T ss_pred HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh---hCCcccccc-----cHHHHHHHhccCCC--e------ehHHHH
Confidence 5689999999999999999999999888877764 456554433 35566777554211 2 568899
Q ss_pred HHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccc-
Q 000409 91 RLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNM- 169 (1555)
Q Consensus 91 r~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~- 169 (1555)
++++.|+---|++-+-|++ -|..++.. |. + ...+||.++-|-.- .+-.|.-++.+.-..
T Consensus 241 KLF~aLtplEPRLgKKLie-----plt~li~s------T~-A------mSLlYECvNTVVa~--s~s~g~~d~~asiqLC 300 (877)
T KOG1059|consen 241 KLFAALTPLEPRLGKKLIE-----PITELMES------TV-A------MSLLYECVNTVVAV--SMSSGMSDHSASIQLC 300 (877)
T ss_pred HHHhhccccCchhhhhhhh-----HHHHHHHh------hH-H------HHHHHHHHHHheee--hhccCCCCcHHHHHHH
Confidence 9999999999999998876 33344411 11 1 23577777754422 000010000000000
Q ss_pred c--ccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHcc
Q 000409 170 F--VKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMY 247 (1555)
Q Consensus 170 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~ 247 (1555)
. +++=+.+..+ |-+.----.=-++++.+|..++.+-..++-.|-| .+.+||-++|-.+.-||
T Consensus 301 vqKLr~fiedsDq----------NLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~D-----kD~SIRlrALdLl~gmV- 364 (877)
T KOG1059|consen 301 VQKLRIFIEDSDQ----------NLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDD-----KDESIRLRALDLLYGMV- 364 (877)
T ss_pred HHHHhhhhhcCCc----------cHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhcc-----CCchhHHHHHHHHHHHh-
Confidence 0 0000000000 0000000112245567888888888777777654 58999999999999998
Q ss_pred CCCHHHHHHhhhc
Q 000409 248 FSSAEMIQSLLSV 260 (1555)
Q Consensus 248 ~~~~~~L~~vlk~ 260 (1555)
+.+.|.++++.
T Consensus 365 --skkNl~eIVk~ 375 (877)
T KOG1059|consen 365 --SKKNLMEIVKT 375 (877)
T ss_pred --hhhhHHHHHHH
Confidence 56777777654
No 48
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=73.88 E-value=1.1e+02 Score=36.50 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHH
Q 000409 231 NSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAV 310 (1555)
Q Consensus 231 ~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I 310 (1555)
+.-+|+.++..|.++.+- +++.+.++-++..+--+.|.+-..+|.-++...+.|+--||+-... ...+..|||++.|
T Consensus 184 ndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg--reflaQeglIdli 260 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG--REFLAQEGLIDLI 260 (524)
T ss_pred hhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh--hhhcchhhHHHHH
Confidence 445788888888888654 6788899989888878888888889988888899999999886653 5566789999999
Q ss_pred HHHhhc
Q 000409 311 DQLILA 316 (1555)
Q Consensus 311 ~~La~~ 316 (1555)
..|..-
T Consensus 261 cnIIsG 266 (524)
T KOG4413|consen 261 CNIISG 266 (524)
T ss_pred HHHhhC
Confidence 998763
No 49
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=73.67 E-value=2.4 Score=36.92 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 000409 9 AADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRI 42 (1555)
Q Consensus 9 ~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rI 42 (1555)
.-+++.+++|.|..+|+.++..|-+.||+|+.+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3457889999999999999999999999999765
No 50
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.47 E-value=6.2 Score=30.51 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.8
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHHhh
Q 000409 16 AVPLLTNLLQYHDAKVLEHASVCLTRIAEA 45 (1555)
Q Consensus 16 ~~PiL~nvL~~~D~~vvE~a~~c~~rIvds 45 (1555)
++|.|.+.++..|.+|-+.|+.|+..|++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999863
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=70.56 E-value=15 Score=36.57 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=49.6
Q ss_pred CChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccC
Q 000409 8 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSN 73 (1555)
Q Consensus 8 ~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~ 73 (1555)
.--+++.+.+|.+.+.++-+|.+|-..||-|++.|+.-++ .+.|. .=.++...+.+++..++
T Consensus 20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~--~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILP--YFNEIFDALCKLSADPD 81 (97)
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHcCCc
Confidence 3446788999999999999999999999999999998883 34444 22377888889997764
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=68.53 E-value=66 Score=39.78 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=121.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHh------------hh-----cCChhhHHHHhhhhHHHHHHHHhcccCCCCC
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAE------------AF-----ASSPDKLDELCNHGLVTQAATLISTSNSGGG 77 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvd------------sf-----~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~ 77 (1555)
-++..+..+=-|.+.-|.+..|.++.++.- -| .-+|..-|.+-..++++.|.++|..+
T Consensus 179 rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~----- 253 (442)
T KOG2759|consen 179 RCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES----- 253 (442)
T ss_pred HHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH-----
Confidence 345555555556666666677777777761 11 12566667776678888888888543
Q ss_pred CcccCchhHHHHHHHHHHHhcCCH------HHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHh
Q 000409 78 QASLSTPTYTGLIRLLSTCASGSP------LCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANE 151 (1555)
Q Consensus 78 ~~~ls~~t~~~~Lr~Ls~la~~Sp------~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~e 151 (1555)
.-.-..--||-++.+++...| .++..++.+++..++.-+..+-- ..|.|.+-++.|.|
T Consensus 254 ---~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky-------------sDEDL~~di~~L~e 317 (442)
T KOG2759|consen 254 ---TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY-------------SDEDLVDDIEFLTE 317 (442)
T ss_pred ---HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC-------------CcHHHHHHHHHHHH
Confidence 111223344556677788876 78888999999999888875411 12344444444443
Q ss_pred hCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCC
Q 000409 152 LLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVN 231 (1555)
Q Consensus 152 LLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~ 231 (1555)
-|--.-+...+...|..-+..|-+.-.+. +.+ +.=+.+|.. .+-+++ -.||-+|+.+..++.+
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~-----Hk~--e~FW~eNa~--rlnenn--------yellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPV-----HKS--EKFWRENAD--RLNENN--------YELLKILIKLLETSND 380 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCcc-----ccc--cchHHHhHH--HHhhcc--------HHHHHHHHHHHhcCCC
Confidence 33211111111011111111121111111 100 000111111 111122 2456667777777776
Q ss_pred hHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 000409 232 SPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILME 291 (1555)
Q Consensus 232 ~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~ 291 (1555)
+.|=.=+..-|.-.|-+.. +. +.++...--=.-+-..|+.+|+.+=..||+.+..||-
T Consensus 381 p~iL~VAc~DIge~Vr~yP-~g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYP-EG-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCc-hH-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 6543333333333333322 22 2222222222445566889999999999999999984
No 53
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=67.78 E-value=12 Score=32.59 Aligned_cols=42 Identities=36% Similarity=0.556 Sum_probs=36.4
Q ss_pred hhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000409 203 LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKL 245 (1555)
Q Consensus 203 ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~ 245 (1555)
+...+++.+..|...++|.|+.....+ +..||..+.+++.+|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 445688999999999999999999877 569999999999765
No 54
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.02 E-value=3e+02 Score=33.50 Aligned_cols=222 Identities=13% Similarity=0.182 Sum_probs=144.5
Q ss_pred hcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHH
Q 000409 24 LQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLC 103 (1555)
Q Consensus 24 L~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~l 103 (1555)
-.+-|+-++-++..++.+++++- | .|++..-..-++.||... +=+......-|+.+...|-.-...
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~q---p----dl~da~g~~vvv~lL~~~-------~~~~dlt~~~~~~v~~Ac~~hE~n 181 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQ---P----DLFDAEAMAVVLKLLALK-------VESEEVTLLTLQWLQKACIMHEVN 181 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCC---c----chhccccHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHHHhHHH
Confidence 45557788888888888887764 3 345555556666777322 112333445678888888887777
Q ss_pred HHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCC
Q 000409 104 AKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASS 183 (1555)
Q Consensus 104 s~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1555)
-+.+++.+|.+.|.+.|++... .+-|.|+...|+.|+- |.+ |.++.
T Consensus 182 rQ~~m~~~il~Li~~~l~~~gk-------------~~~VRel~~a~r~l~~--dDD-iRV~f------------------ 227 (461)
T KOG4199|consen 182 RQLFMELKILELILQVLNREGK-------------TRTVRELYDAIRALLT--DDD-IRVVF------------------ 227 (461)
T ss_pred HHHHHHhhHHHHHHHHHcccCc-------------cHHHHHHHHHHHHhcC--CCc-eeeec------------------
Confidence 7888899999999999987543 1235555555565543 222 21110
Q ss_pred CCCCCCCCCCccchhhHHhhhccChHHHHHHHHh-HHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccc
Q 000409 184 SGKQDDTNGNASEVSAREKLLSDQPELLQQFGMD-LLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTN 262 (1555)
Q Consensus 184 ~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~-LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~ 262 (1555)
++ --+.++.|++. ++.+|++..++-.++.+=-..+..+.++- ...+.=+++....-
T Consensus 228 -g~--------------------ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA--Vr~E~C~~I~e~GG 284 (461)
T KOG4199|consen 228 -GQ--------------------AHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA--VRDEICKSIAESGG 284 (461)
T ss_pred -ch--------------------hhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH--HHHHHHHHHHHccC
Confidence 00 01234455544 48999999999999999888888877765 23455567777788
Q ss_pred hHHHHHHHHhcCCC---chHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhcCC
Q 000409 263 ISSFLAGVLAWKDP---HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGN 318 (1555)
Q Consensus 263 isS~LAsiLss~D~---~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~~~ 318 (1555)
+.+++--|=++.+. .++-.+|.+..-|- ..|--..+..|-|+...|.+|+.+..
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralA--G~DsvKs~IV~~gg~~~ii~l~~~h~ 341 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALA--GSDSVKSTIVEKGGLDKIITLALRHS 341 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHh--CCCchHHHHHHhcChHHHHHHHHHcC
Confidence 86666555555553 24444554444332 35668999999999999999998654
No 55
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=66.75 E-value=1e+02 Score=38.81 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 000409 209 ELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLM 246 (1555)
Q Consensus 209 e~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v 246 (1555)
|++-..+.+|.|.+++.|.|+ ...||+.|+-++--||
T Consensus 440 EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHH
Confidence 445566778999999999998 8999986554444444
No 56
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=65.57 E-value=13 Score=30.40 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=34.6
Q ss_pred ChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhc
Q 000409 49 SPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 98 (1555)
Q Consensus 49 ~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~ 98 (1555)
+++.-+.|++.|.|+.|++||... +..+....+..|++||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---------DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---------SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---------CHHHHHHHHHHHHHHhC
Confidence 467889999999999999999643 56788889999998874
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=62.91 E-value=13 Score=28.66 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHccC
Q 000409 218 LLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 248 (1555)
Q Consensus 218 LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~ 248 (1555)
|+|.|++..+.. ++.||+.+..++.+|..+
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 689999999977 899999999999998764
No 58
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=62.81 E-value=37 Score=33.01 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=53.9
Q ss_pred HHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhc--cchHHHHHHHHhcCCCchHHHHHHHHHH
Q 000409 214 FGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV--TNISSFLAGVLAWKDPHVLIPSLQIAEI 288 (1555)
Q Consensus 214 f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~--~~isS~LAsiLss~D~~lv~~ALqi~e~ 288 (1555)
|=+.+|-.|..+|..+-+..||..+|.+|..|+.... +-+++ .++=+.|..+....+..+|..|.|+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 5567778888999999999999999999999996532 22333 3444666666667788999999999875
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=62.46 E-value=32 Score=34.23 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=55.9
Q ss_pred ChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHH
Q 000409 207 QPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIA 286 (1555)
Q Consensus 207 ~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~ 286 (1555)
.+..+..+++.|+|.++..+... +..||+.+..++.+|+..+..++|...- .|=.-|..+++-.|+.+--+| +++
T Consensus 17 l~~~~~~~l~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~---~IF~~L~kl~~D~d~~Vr~~a-~~L 91 (97)
T PF12755_consen 17 LGKDISKYLDEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFN---EIFDALCKLSADPDENVRSAA-ELL 91 (97)
T ss_pred chHhHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCchhHHHHH-HHH
Confidence 34448889999999999999888 9999999999999999887776665222 222445555555666655444 444
Q ss_pred HHHH
Q 000409 287 EILM 290 (1555)
Q Consensus 287 e~Ll 290 (1555)
.-||
T Consensus 92 d~ll 95 (97)
T PF12755_consen 92 DRLL 95 (97)
T ss_pred HHHh
Confidence 4444
No 60
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.44 E-value=32 Score=45.13 Aligned_cols=88 Identities=10% Similarity=0.161 Sum_probs=69.2
Q ss_pred HHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHH-hcCCCchHHHHHHHHHHH
Q 000409 211 LQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL-AWKDPHVLIPSLQIAEIL 289 (1555)
Q Consensus 211 ~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiL-ss~D~~lv~~ALqi~e~L 289 (1555)
+......|+-.|+.+|++.=..-|--.++-++.-+++.+.+.-.+.+-+-.|+ |-.-| +..|..+...|..++--|
T Consensus 590 ~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~py---L~~gL~n~~e~qVc~~aVglVgdl 666 (859)
T KOG1241|consen 590 IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPY---LLMGLSNFQEYQVCAAAVGLVGDL 666 (859)
T ss_pred chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHH---HHHHhhcchHHHHHHHHHHHHHHH
Confidence 44556788889999999966677888999999999988888777777654443 55555 567788889999999999
Q ss_pred HHhChhhHHHHH
Q 000409 290 MEKLPGTFSKMF 301 (1555)
Q Consensus 290 l~Klpd~f~~~F 301 (1555)
..-+.+.|.++-
T Consensus 667 ~raL~~~i~py~ 678 (859)
T KOG1241|consen 667 ARALEDDILPYC 678 (859)
T ss_pred HHHHHhhhhhHH
Confidence 999998887753
No 61
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.04 E-value=42 Score=36.60 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=80.2
Q ss_pred ccC-hHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCC--CHHHHHHhhhccchHHHHHHHHhcCC-CchHH
Q 000409 205 SDQ-PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFS--SAEMIQSLLSVTNISSFLAGVLAWKD-PHVLI 280 (1555)
Q Consensus 205 ~~~-pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~--~~~~L~~vlk~~~isS~LAsiLss~D-~~lv~ 280 (1555)
..+ +|.+.+-....+..|+.+.+..-...++..++.++.+|..++ .|+.-+++.. ..++.|+..++.--+ .....
T Consensus 54 ~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~ 132 (165)
T PF08167_consen 54 EQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT-PNLPKFIQSLLQLLQDSSCPE 132 (165)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh-ccHHHHHHHHHHHHhccccHH
Confidence 344 788878888899999999999999999999999999999874 4566677764 448888888887533 67888
Q ss_pred HHHHHHHHHHHhChhhHHHHHHH
Q 000409 281 PSLQIAEILMEKLPGTFSKMFVR 303 (1555)
Q Consensus 281 ~ALqi~e~Ll~Klpd~f~~~F~R 303 (1555)
.+|.....||...|-.|.++-.+
T Consensus 133 ~~l~~L~~ll~~~ptt~rp~~~k 155 (165)
T PF08167_consen 133 TALDALATLLPHHPTTFRPFANK 155 (165)
T ss_pred HHHHHHHHHHHHCCccccchHHH
Confidence 99999999999999998876544
No 62
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=60.88 E-value=1.2e+02 Score=40.16 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChh
Q 000409 216 MDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPG 295 (1555)
Q Consensus 216 ~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd 295 (1555)
+-|+|-|.+++.-+-+..||.-||.++.+++..++.-...+.+ --|..-....|+.++.+.++|.+.|+-+-++
T Consensus 427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~------lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDEL------LPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 4569999999888889999999999999999665554443332 1122223458999999999999999988775
No 63
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=56.66 E-value=39 Score=43.74 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=69.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHH
Q 000409 223 IQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFV 302 (1555)
Q Consensus 223 i~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~ 302 (1555)
+.-|..+.++.+|.+.+|++...++.++.+.....++..+. ++|+...+.+|..+.-++||+.+.|.+...+.--..|.
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a-~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPA-NLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhH-HHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 34588999999999999999999999999998888888876 99999999999999999999999988887666555555
Q ss_pred Hhc
Q 000409 303 REG 305 (1555)
Q Consensus 303 REG 305 (1555)
.-|
T Consensus 545 ~~~ 547 (678)
T KOG1293|consen 545 KFK 547 (678)
T ss_pred hhh
Confidence 444
No 64
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.14 E-value=2.2e+02 Score=38.13 Aligned_cols=242 Identities=21% Similarity=0.235 Sum_probs=138.7
Q ss_pred HHHHHhhhcCC-ChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHH
Q 000409 17 VPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLST 95 (1555)
Q Consensus 17 ~PiL~nvL~~~-D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~ 95 (1555)
.-.++|+|+-+ |.-|.=-+..++.-+||-|.-.++....+. ..+...+.+||.... .-.|.+.+|..|+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l-enlf~~lfkll~~~~--------e~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL-ENLFVLLFKLLKAVE--------ECDTKTSVLNLLST 598 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH-HHHHHHHHHHHHHHh--------hhhhHHHHHHHHHH
Confidence 34568899888 666667788899999999987777777776 466666677775331 33466677777765
Q ss_pred H-hcCCHHH-------------------HHHHHhcCchhHHHHHhcCCCC-CCC------------CCC-Cc--------
Q 000409 96 C-ASGSPLC-------------------AKTLLHLGISGILKDILSGSGV-SAN------------SAV-PP-------- 133 (1555)
Q Consensus 96 l-a~~Sp~l-------------------s~~Ll~~~i~~tL~~iLtg~~~-~~~------------~~~-~~-------- 133 (1555)
+ .+.++.| ...||++-|..+|+++..+-.. +.. ++. ++
T Consensus 599 lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 599 LIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 4 3445544 2456777777788877754221 000 000 00
Q ss_pred -------ccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhh--HHhhh
Q 000409 134 -------ALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSA--REKLL 204 (1555)
Q Consensus 134 -------~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--R~~ll 204 (1555)
.+........|++.|+-.|+|.+... ++ +-+..-. .--.+
T Consensus 679 gmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~s-------------------te------------~L~t~l~Ii~sYil 727 (978)
T KOG1993|consen 679 GMELWLTTLMNSQKLTPELLLLFPHLLYIIEQS-------------------TE------------NLPTVLMIISSYIL 727 (978)
T ss_pred HHHHHHHHHhcccccCHHHHHHHHHHHHHHHhh-------------------hh------------hHHHHHHHHHHHHh
Confidence 01111222233344444444422110 00 0001100 11234
Q ss_pred ccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCH--HHHHHhhhccchHHHHHHHHhc-CCCchHHH
Q 000409 205 SDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSA--EMIQSLLSVTNISSFLAGVLAW-KDPHVLIP 281 (1555)
Q Consensus 205 ~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~--~~L~~vlk~~~isS~LAsiLss-~D~~lv~~ 281 (1555)
-++++.++.+...++--|.+.+ ..||.+.+.+++|++..+-. ..|...+-...++-++-+|... +-+-+...
T Consensus 728 Ld~~~fl~~y~~~i~k~~~~~l-----~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~ 802 (978)
T KOG1993|consen 728 LDNTVFLNDYAFGIFKKLNDLL-----DDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGE 802 (978)
T ss_pred hccHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHH
Confidence 5578888888888888887776 57899999999999965211 1333333344444444455322 22555555
Q ss_pred HHHHHHHHHHhChhhHHHHHHH
Q 000409 282 SLQIAEILMEKLPGTFSKMFVR 303 (1555)
Q Consensus 282 ALqi~e~Ll~Klpd~f~~~F~R 303 (1555)
-|+++--..=+.|+.|..-+.-
T Consensus 803 yl~vvaRi~l~n~~~~msvlqt 824 (978)
T KOG1993|consen 803 YLLVVARISLRNPSLFMSVLQT 824 (978)
T ss_pred HHHHHHHHHhcChHHHHHHHHh
Confidence 6777777777788888765554
No 65
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.40 E-value=44 Score=35.70 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=74.2
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCccc
Q 000409 2 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASL 81 (1555)
Q Consensus 2 Cr~i~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~l 81 (1555)
|-.|..+ -.-.++++-.|..+|+|.|++|+=.|..-+--++.+. ......++++.+++..|.+++... .
T Consensus 25 cD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evask~Fl~eL~kl~~~~--------~ 93 (144)
T cd03568 25 CDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENC--GKRFHQEVASRDFTQELKKLINDR--------V 93 (144)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHhccc--------C
Confidence 4444444 3467899999999999999999999999888888887 345567889999999999999542 2
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhc
Q 000409 82 STPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 121 (1555)
Q Consensus 82 s~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLt 121 (1555)
......+++.++-..+..=+. --.++....+|+.|.
T Consensus 94 ~~~Vk~kil~li~~W~~~f~~----~~~l~~i~~~y~~L~ 129 (144)
T cd03568 94 HPTVKEKLREVVKQWADEFKN----DPSLSLMSDLYKKLK 129 (144)
T ss_pred CHHHHHHHHHHHHHHHHHhCC----CcccHHHHHHHHHHH
Confidence 455677777777665432110 012344567777773
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=52.36 E-value=24 Score=33.31 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHHHhhh-cCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHH
Q 000409 17 VPLLTNLL-QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLST 95 (1555)
Q Consensus 17 ~PiL~nvL-~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~ 95 (1555)
+|.|.+.| ++.|+.|-..|+.|+.++ .+..+++.+.+++.+. ++.+...+++.|+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--------------~~~~~~~~L~~~l~d~---------~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--------------GDPEAIPALIELLKDE---------DPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--------------THHHHHHHHHHHHTSS---------SHHHHHHHHHHHHC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--------------CCHhHHHHHHHHHcCC---------CHHHHHHHHHHHHH
Confidence 47788887 899999999999999832 2336788888888543 46678888888887
Q ss_pred H
Q 000409 96 C 96 (1555)
Q Consensus 96 l 96 (1555)
+
T Consensus 58 i 58 (88)
T PF13646_consen 58 I 58 (88)
T ss_dssp C
T ss_pred h
Confidence 6
No 67
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=51.44 E-value=2.5e+02 Score=30.37 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=94.1
Q ss_pred HHhhhc-CCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhc
Q 000409 20 LTNLLQ-YHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCAS 98 (1555)
Q Consensus 20 L~nvL~-~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~ 98 (1555)
|+.+.. .....+--.|.+|++++.+.+ ++...+.|+ +. +..++... ....+..++.+|+.+=-
T Consensus 9 L~~L~~~~~~~~~r~~a~v~l~k~l~~~---~~~~~~~~~-~~---i~~~~~~~---------~~d~~i~~~~~l~~lfp 72 (157)
T PF11701_consen 9 LTSLDMLRQPEEVRSHALVILSKLLDAA---REEFKEKIS-DF---IESLLDEG---------EMDSLIIAFSALTALFP 72 (157)
T ss_dssp HHHHHCTTTSCCHHHHHHHHHHHHHHHH---HHHHHHHHH-HH---HHHHHCCH---------HCCHHHHHHHHHHHHCT
T ss_pred HHHhcccCCCHhHHHHHHHHHHHHHHHh---HHHHHHHHH-HH---HHHHHccc---------cchhHHHHHHHHHHHhC
Confidence 455544 578888999999999997665 444444443 22 22222221 23388999999999999
Q ss_pred CCHHHHHHHHh-cCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCccc
Q 000409 99 GSPLCAKTLLH-LGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVR 177 (1555)
Q Consensus 99 ~Sp~ls~~Ll~-~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~ 177 (1555)
+-|++...|+. -|+.+.|..+..+... +...-..++++|. .+.
T Consensus 73 ~~~dv~~~l~~~eg~~~~l~~~~~~~~~------------~~~~~~~~lell~----------aAc-------------- 116 (157)
T PF11701_consen 73 GPPDVGSELFLSEGFLESLLPLASRKSK------------DRKVQKAALELLS----------AAC-------------- 116 (157)
T ss_dssp TTHHHHHHHCCTTTHHHHHHHHHH-CTS-------------HHHHHHHHHHHH----------HHT--------------
T ss_pred CCHHHHHHHHhhhhHHHHHHHHHhcccC------------CHHHHHHHHHHHH----------HHH--------------
Confidence 99999999997 7788888777763221 2333445555555 000
Q ss_pred CCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChH-HHHHHHHHHHHH
Q 000409 178 KSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSP-VRHKCLSVIGKL 245 (1555)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~-VR~k~L~ailk~ 245 (1555)
....-|.-. .+..+++|-+.|..+-+.. ||-.++.++.|+
T Consensus 117 -----------------~d~~~r~~I-----------~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 117 -----------------IDKSCRTFI-----------SKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp -----------------TSHHHHHCC-----------HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred -----------------ccHHHHHHH-----------HHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 000111111 3556899999998887787 999999999884
No 68
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.21 E-value=1.3e+02 Score=36.26 Aligned_cols=100 Identities=12% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHhhhcCCChh-HHHHHHHHHHHHHh--h----hcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHH
Q 000409 15 EAVPLLTNLLQYHDAK-VLEHASVCLTRIAE--A----FASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYT 87 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~-vvE~a~~c~~rIvd--s----f~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~ 87 (1555)
.++|.|.++|++.-+. +|--+|++|+-++- - |.+-..+-..++..+.++.++.+|... +.|++..
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~--------~dp~~L~ 260 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG--------IDPDSLV 260 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc--------CCccHHH
Confidence 5789999998877554 99999999987652 2 223445666777777888899988554 6777888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCC
Q 000409 88 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGS 123 (1555)
Q Consensus 88 ~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~ 123 (1555)
.+.-.|+.+|- ..++.+++-+.|=.++|..++..+
T Consensus 261 ~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 261 SLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDS 295 (461)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhh
Confidence 88888888664 589999999999899999999543
No 69
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.51 E-value=5.3e+02 Score=34.60 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=120.0
Q ss_pred hhhHHHHhhhh--HHHHHHHHhcccCCCCCC------cccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhc
Q 000409 50 PDKLDELCNHG--LVTQAATLISTSNSGGGQ------ASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILS 121 (1555)
Q Consensus 50 ~~~Le~L~~~~--Ll~~l~~LL~~~~~~~~~------~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLt 121 (1555)
.+.+++|.+.| |+.+=.+++..++..+|. .+||.+|.+.=|-.+..+..-||.-+..-| +||..+-+
T Consensus 166 ~~~VeKl~e~G~~lm~qdae~f~~t~~~~gsd~k~l~siiSsGT~~DkitA~~LlvqesPvh~lk~l-----EtLls~c~ 240 (988)
T KOG2038|consen 166 KDVVEKLLELGKDLMAQDAELFQETKQDKGSDAKWLYSIISSGTLTDKITAMTLLVQESPVHNLKSL-----ETLLSSCK 240 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhcCcchhhhHHHHHhhcccchhHHHHH-----HHHHHHHh
Confidence 45677777665 667777777644433332 357888888888888888888876554433 34444442
Q ss_pred CCCCCCCCCCCcccCCChhhHHHHHH-----HHHhhCCCCCC-CCccCCCCccccccCCcccCCCCCCCCCCCCCCCCcc
Q 000409 122 GSGVSANSAVPPALSRPAEQIFEIVN-----LANELLPPLPQ-GTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNAS 195 (1555)
Q Consensus 122 g~~~~~~~~~~~~~~rp~eql~evl~-----LI~eLLP~lP~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1555)
.- .+++...++. ||+-|||- -+ -.|+. .+...-+ + ..
T Consensus 241 KK--------------sk~~a~~~l~~LkdlfI~~LLPd-RKLk~f~q---------rp~~~l~------~-------~~ 283 (988)
T KOG2038|consen 241 KK--------------SKRDALQALPALKDLFINGLLPD-RKLKYFSQ---------RPLLELT------N-------KR 283 (988)
T ss_pred hh--------------hHHHHHHHHHHHHHHHHhccCcc-hhhHHHhh---------Chhhhcc------c-------cc
Confidence 21 2333333333 47777774 11 11210 0000000 0 00
Q ss_pred chhhHHhhhccC----hHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHH
Q 000409 196 EVSAREKLLSDQ----PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVL 271 (1555)
Q Consensus 196 ~~~~R~~ll~~~----pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiL 271 (1555)
..+ |+-++=-- .-++.+|+..| +..+--+...||.++|..|+-+++. .|++=..+| ..|..-|
T Consensus 284 ~~~-k~Ll~WyfE~~LK~ly~rfievL-----e~lS~D~L~~vk~raL~ti~~lL~~-kPEqE~~LL------~~lVNKl 350 (988)
T KOG2038|consen 284 LRD-KILLMWYFEHELKILYFRFIEVL-----EELSKDPLEEVKKRALKTIYDLLTN-KPEQENNLL------VLLVNKL 350 (988)
T ss_pred ccc-ceehHHHHHHHHHHHHHHHHHHH-----HHHccccHHHHHHHHHHHHHHHHhC-CcHHHHHHH------HHHHHhc
Confidence 001 11111111 23344444332 3456667899999999999999977 445544444 3444445
Q ss_pred hcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhcCC
Q 000409 272 AWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGN 318 (1555)
Q Consensus 272 ss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~~~ 318 (1555)
...+..+-.-|-.+++-|+.+.|.. |-=|+.+|++|+=+++
T Consensus 351 GDpqnKiaskAsylL~~L~~~HPnM------K~Vvi~EIer~~FRpn 391 (988)
T KOG2038|consen 351 GDPQNKIASKASYLLEGLLAKHPNM------KIVVIDEIERLAFRPN 391 (988)
T ss_pred CCcchhhhhhHHHHHHHHHhhCCcc------eeehHHHHHHHHcccC
Confidence 5566778888899999999999984 5568899999997754
No 70
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=10 Score=47.14 Aligned_cols=65 Identities=5% Similarity=-0.191 Sum_probs=58.6
Q ss_pred chhhhcccchHHHHHHHHHHHHHhcCCCchHHHHhhccCCcccChhhHHHHHHhhhhchHHHHHH
Q 000409 1046 YEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYR 1110 (1555)
Q Consensus 1046 ~~~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~ 1110 (1555)
.-.+.++++++++|++|..-++.--++.+.||.-.+-.+++.++++++.+|-+.|.+++.|.-..
T Consensus 128 ~~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taF 192 (621)
T KOG0170|consen 128 AMCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAF 192 (621)
T ss_pred hhhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHh
Confidence 34567999999999999999999899999999999999999999999999999999998886543
No 71
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=48.72 E-value=2.1e+02 Score=38.89 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhh
Q 000409 14 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN 58 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~ 58 (1555)
++++-.|..+|.-....|---|..|+.-|+... +.++|+.+++
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKv--ke~~le~~ve 88 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKV--KEDQLETIVE 88 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhc--hHHHHHHHHH
Confidence 456667788888888999999999999999554 5667777665
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=48.56 E-value=2.3e+02 Score=37.09 Aligned_cols=163 Identities=23% Similarity=0.247 Sum_probs=100.0
Q ss_pred hHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCCh
Q 000409 60 GLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPA 139 (1555)
Q Consensus 60 ~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~ 139 (1555)
+.|+.++.+|.... +..+-..++.+|..++ ++|+=.+.|++.|.+..|.+++... .
T Consensus 98 ~~IP~Lle~l~~~s--------~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---------------~ 153 (543)
T PF05536_consen 98 SRIPLLLEILSSSS--------DLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---------------S 153 (543)
T ss_pred HHHHHHHHHHHcCC--------chhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---------------c
Confidence 35677777775541 1357788999999999 8999999999999999999999551 1
Q ss_pred hhHHHHHHHHHhhCCCCCCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHH
Q 000409 140 EQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLL 219 (1555)
Q Consensus 140 eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~Ll 219 (1555)
.+...++.++..|+=..... ...+++ +.+..++
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~-------------------------------------------~~~~~~----~~l~~il 186 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQK-------------------------------------------SWAEDS----QLLHSIL 186 (543)
T ss_pred chHHHHHHHHHHHHHhcchh-------------------------------------------hhhhhH----HHHHHHH
Confidence 23445555555443321110 001111 1234556
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhc---cchHHHHHHHHhcCC-CchHHHHHHHHHHHHHhCh
Q 000409 220 PVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV---TNISSFLAGVLAWKD-PHVLIPSLQIAEILMEKLP 294 (1555)
Q Consensus 220 PvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~---~~isS~LAsiLss~D-~~lv~~ALqi~e~Ll~Klp 294 (1555)
+.|-..|+.- .-..|-..+..+..++...+....+..... ..+-..|..||.++= +.--..||.++..|++-+.
T Consensus 187 ~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 187 PSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 7777777644 445566777777777777631111111111 456677788887764 4455567888887777643
No 73
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.97 E-value=4e+02 Score=37.17 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCC--HHHHHHhhhccc-hHHHHHHHHhcCCCchHHHHHHHHHH
Q 000409 212 QQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSS--AEMIQSLLSVTN-ISSFLAGVLAWKDPHVLIPSLQIAEI 288 (1555)
Q Consensus 212 ~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~--~~~L~~vlk~~~-isS~LAsiLss~D~~lv~~ALqi~e~ 288 (1555)
..|+..|+++|.+.++..-.+ ||-.+++++.-++-+.+ .+..+..-...| +--.+-..+...|......+|....-
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 346678899999999887555 99999999999998875 333333222122 11222222333455567888999999
Q ss_pred HHHhChhhHHHHHHHhcHHHHHHHHhh
Q 000409 289 LMEKLPGTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 289 Ll~Klpd~f~~~F~REGV~~~I~~La~ 315 (1555)
|++-.|..+.++|.- |+.-.-.++.
T Consensus 233 l~e~~pk~l~~~l~~--ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQ--IIQFSLEIAK 257 (1075)
T ss_pred HHhhchHHHHHHHHH--HHHHHHHHhh
Confidence 999999999888853 4444444443
No 74
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.97 E-value=39 Score=35.90 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=40.5
Q ss_pred hcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 272 AWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 272 ss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
.++++++.+.||.++|.+++.+...|+.++.+.+.++++-+|..+
T Consensus 48 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 48 QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence 346677889999999999999999999999999999999999853
No 75
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=44.18 E-value=1e+02 Score=34.90 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=62.0
Q ss_pred HHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCC--HHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHH
Q 000409 211 LQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSS--AEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEI 288 (1555)
Q Consensus 211 ~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~--~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~ 288 (1555)
+..|+..++|.|++..+.+ +.-||..+-.++.-|+.++. +..+. .++...+.++.+.+=..+++.+..
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~~~---------~~l~~~~~~Kn~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKILL---------EILSQGLKSKNPQVREECAEWLAI 157 (228)
T ss_dssp GHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHH---------HHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHHHH---------HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6678899999999999998 68899999999999999888 33322 334445567778888899999999
Q ss_pred HHHhCh---hhHHHHHHHhcHHHHHHHHhh
Q 000409 289 LMEKLP---GTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 289 Ll~Klp---d~f~~~F~REGV~~~I~~La~ 315 (1555)
++++.+ ..+.....-+.+...|.++..
T Consensus 158 ~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~ 187 (228)
T PF12348_consen 158 ILEKWGSDSSVLQKSAFLKQLVKALVKLLS 187 (228)
T ss_dssp HHTT-----GGG--HHHHHHHHHHHHHHHT
T ss_pred HHHHccchHhhhcccchHHHHHHHHHHHCC
Confidence 999999 444333322445555555543
No 76
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=43.34 E-value=8e+02 Score=31.16 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhc-CCCchHHHHHHHHHHHHHhC---
Q 000409 219 LPVLIQIYGSSV-NSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAW-KDPHVLIPSLQIAEILMEKL--- 293 (1555)
Q Consensus 219 lPvLi~vy~ssv-~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss-~D~~lv~~ALqi~e~Ll~Kl--- 293 (1555)
++.|+++..+.. +..+-|+++-++-=+. |..+ ..+.+....+-..|+.|+.. .-..++-.+|.+...|+.+-
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~--~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPH--AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHH--HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 455555545444 8899999888776554 4333 45555666666777887753 33568889999999999976
Q ss_pred --hhhHHHHHHHhcHHHHHHHHhhcC
Q 000409 294 --PGTFSKMFVREGVVHAVDQLILAG 317 (1555)
Q Consensus 294 --pd~f~~~F~REGV~~~I~~La~~~ 317 (1555)
...+...+.-.|+..-++.|....
T Consensus 264 ~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred chhhhHHHHHHHcChHHHHHHHhcCC
Confidence 556888888889999999888754
No 77
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.32 E-value=46 Score=35.55 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=40.2
Q ss_pred CCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 274 KDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 274 ~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
+++++.+.||.+++.+++.+...|+..+....+++++.+|...
T Consensus 49 ~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 49 KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 5678899999999999999999999999999999999999975
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=42.44 E-value=6.9e+02 Score=32.68 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=35.0
Q ss_pred cChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 000409 206 DQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLM 246 (1555)
Q Consensus 206 ~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v 246 (1555)
++|..+..|+-.|+|-|-.+..-. .+.||.-...++..++
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALL 443 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHH
Confidence 467788999999999999998888 8999999999886665
No 79
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=41.00 E-value=64 Score=30.33 Aligned_cols=44 Identities=30% Similarity=0.381 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcc
Q 000409 14 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLIST 71 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~ 71 (1555)
.+++|.|..++++.|..|...|+.++.+|- +.+.+..|.+++..
T Consensus 30 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 30 PEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHTHHHHHHHHTC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHHHHHHHHHHcC
Confidence 378999999999999999999999999872 24566667777744
No 80
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=38.68 E-value=9e+02 Score=33.48 Aligned_cols=92 Identities=21% Similarity=0.348 Sum_probs=68.2
Q ss_pred hccChHHHHHHHHhHHHHHHH---------------HHhcCCC--hHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHH
Q 000409 204 LSDQPELLQQFGMDLLPVLIQ---------------IYGSSVN--SPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSF 266 (1555)
Q Consensus 204 l~~~pe~~~~f~~~LlPvLi~---------------vy~ssv~--~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~ 266 (1555)
.++.|-+++.....|||.||+ =|..+|+ ..+|+.+.-+++-.+ ..-+..+.+..|
T Consensus 1035 ahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLL--------dscld~~dit~F 1106 (1233)
T KOG1824|consen 1035 AHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLL--------DSCLDRLDITEF 1106 (1233)
T ss_pred HccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHH--------HhhhhhccHHHH
Confidence 345677777777777887764 2677776 678999999887554 666777889899
Q ss_pred HHHHHh-cCC-CchHHHHHHHHHHHHHhChhhHHHHHHH
Q 000409 267 LAGVLA-WKD-PHVLIPSLQIAEILMEKLPGTFSKMFVR 303 (1555)
Q Consensus 267 LAsiLs-s~D-~~lv~~ALqi~e~Ll~Klpd~f~~~F~R 303 (1555)
|--+-. -+| +.+-+..+-|.+.|-.+.|..-+..+-|
T Consensus 1107 l~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~ 1145 (1233)
T KOG1824|consen 1107 LNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDR 1145 (1233)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 985533 366 4566778999999999999986665544
No 81
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=38.42 E-value=66 Score=33.82 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=40.9
Q ss_pred hcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 272 AWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 272 ss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
.++++++.+.||.+++.+++.+...|+.++...++++++.++...
T Consensus 47 ~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 47 NNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 346678999999999999999999999999999999999999874
No 82
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=37.58 E-value=9.7e+02 Score=30.50 Aligned_cols=120 Identities=20% Similarity=0.156 Sum_probs=79.0
Q ss_pred cCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHH
Q 000409 25 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA 104 (1555)
Q Consensus 25 ~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls 104 (1555)
...|..++.-|.-|+|.++= ++|..=+...+.+....++..|.... ....+.....-..|+|=.++..++..-
T Consensus 42 ~~~~~~v~~EALKCL~N~lf---~s~~aR~~~~~~~~~~~l~~~Lk~~~----~~~~~~d~~Fl~~RLLFLlTa~~~~~~ 114 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALF---LSPSARQIFVDLGLAEKLCERLKNYS----DSSQPSDVEFLDSRLLFLLTALRPDDR 114 (446)
T ss_pred cCCChHHHHHHHHHHHHHHh---CCHHHHHHHHHcCcHHHHHHHHHccc----ccCCChhHHHHHHHHHHHHhcCChhHH
Confidence 34588999999999999874 34666677778899999999996541 111345566668999999999999999
Q ss_pred HHHHhc-CchhHHHHHhcCCC----CCCCCCCCcccCCChhhHHHHHHHHHhh
Q 000409 105 KTLLHL-GISGILKDILSGSG----VSANSAVPPALSRPAEQIFEIVNLANEL 152 (1555)
Q Consensus 105 ~~Ll~~-~i~~tL~~iLtg~~----~~~~~~~~~~~~rp~eql~evl~LI~eL 152 (1555)
..|++. +.++.|.+.|.... ........+ -.-..+-+.|+++++-.+
T Consensus 115 ~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~-~~~~~~~l~EiLKllFNi 166 (446)
T PF10165_consen 115 KKLIEEHHGVELLTEALERHLKVKSKSSQEPTAP-SPMDEEALSEILKLLFNI 166 (446)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcccccccccCCC-CcchHHHHHHHHHHHHHh
Confidence 999884 56666665553222 111111111 112345568888876633
No 83
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=37.49 E-value=1.2e+02 Score=33.34 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=54.2
Q ss_pred ccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhcc--chHHHHHHHHhcCCCchHHHH
Q 000409 205 SDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVT--NISSFLAGVLAWKDPHVLIPS 282 (1555)
Q Consensus 205 ~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~--~isS~LAsiLss~D~~lv~~A 282 (1555)
...|.++..+ +|.++...... ++.||+.+|.++.+.+. .+.+|.. .+..++ ..|.-.|+.+.-.|
T Consensus 17 ~r~~~~ve~~----~~~l~~~L~D~-~~~VR~~al~~Ls~Li~-------~d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A 83 (178)
T PF12717_consen 17 IRYPNLVEPY----LPNLYKCLRDE-DPLVRKTALLVLSHLIL-------EDMIKVKGQLFSRIL-KLLVDENPEIRSLA 83 (178)
T ss_pred HhCcHHHHhH----HHHHHHHHCCC-CHHHHHHHHHHHHHHHH-------cCceeehhhhhHHHH-HHHcCCCHHHHHHH
Confidence 3345544444 46666666665 89999999999999874 3444432 233444 45555667777777
Q ss_pred HHHHHHHHHh-ChhhHHHHH
Q 000409 283 LQIAEILMEK-LPGTFSKMF 301 (1555)
Q Consensus 283 Lqi~e~Ll~K-lpd~f~~~F 301 (1555)
.....-+..| .|..|...|
T Consensus 84 ~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 84 RSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HHHHHHHHHhccchHHHHHH
Confidence 7776666666 888875554
No 84
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.14 E-value=75 Score=32.21 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHH
Q 000409 265 SFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQL 313 (1555)
Q Consensus 265 S~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~L 313 (1555)
.+|..=|.+++++.++-||.++|.|++.+...|..+|.+..++.++-++
T Consensus 40 ~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~ 88 (115)
T cd00197 40 DAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKF 88 (115)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHh
Confidence 3444445567889999999999999999999999999999888877554
No 85
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=36.20 E-value=57 Score=34.76 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=40.5
Q ss_pred cCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 273 WKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 273 s~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
++++++.+.||.++|.+++.+...|+.++...+.++++.+|+..
T Consensus 52 ~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~ 95 (142)
T cd03569 52 SKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT 95 (142)
T ss_pred CCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc
Confidence 36778999999999999999999999999999999999999964
No 86
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.26 E-value=1.5e+03 Score=32.08 Aligned_cols=246 Identities=19% Similarity=0.239 Sum_probs=127.2
Q ss_pred CCCCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhc---CChhhHHHHhh--hhHHHHHHHHhcccCCCCCC
Q 000409 4 KLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFA---SSPDKLDELCN--HGLVTQAATLISTSNSGGGQ 78 (1555)
Q Consensus 4 ~i~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~---~~~~~Le~L~~--~~Ll~~l~~LL~~~~~~~~~ 78 (1555)
+.|.|--.-..+.+|+|.-.|+++- ..-+-.|.++-.+++.-. .-.+..|.+=. ..+++.+.++=..+-++++
T Consensus 507 ~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~- 584 (1176)
T KOG1248|consen 507 NYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR- 584 (1176)
T ss_pred CCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-
Confidence 5566666667889999999988876 888899999999998852 22344444432 1355555555432211111
Q ss_pred cccC-chhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCC
Q 000409 79 ASLS-TPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLP 157 (1555)
Q Consensus 79 ~~ls-~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP 157 (1555)
..+. -.+++..+|.+ .-..+|.-...+|...+.+..-..- ..+ .+..-..++.+++.+-|..+
T Consensus 585 ~~l~~~~~~L~~i~~~--~~~~t~~dv~~~l~~s~~e~as~~~--------~s~------~~~~~~slLdl~~~~a~~~~ 648 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVD--YFTVTPTDVVGSLKDSAGELASDLD--------ESV------ASFKTLSLLDLLIALAPVQT 648 (1176)
T ss_pred ccHHHHHHHHHHHHHH--HhhcccHHHHHHHHHHHHhHhccch--------hhh------hhHHHHHHHHHHHhhhcccc
Confidence 2111 11222222222 2233343333333333222111100 011 12334567777777777666
Q ss_pred CCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhcc------ChHHHHHHHHhHHHHHHHHHhcCCC
Q 000409 158 QGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSD------QPELLQQFGMDLLPVLIQIYGSSVN 231 (1555)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~------~pe~~~~f~~~LlPvLi~vy~ssv~ 231 (1555)
.+..+ ..+ .+.......+ ......++-++|.+ ....+.+++..|+-.|.+.++++.
T Consensus 649 e~~vs-----~l~---~v~~~~e~~~---------~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~- 710 (1176)
T KOG1248|consen 649 ESQVS-----KLF---TVDPEFENSS---------STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS- 710 (1176)
T ss_pred chhHH-----HHH---HhhHHhhccc---------cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-
Confidence 53221 111 0000000000 00122233333322 445799999999999999999994
Q ss_pred hHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHH-HhcCCC--chHHHHHHHHHHHHH
Q 000409 232 SPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGV-LAWKDP--HVLIPSLQIAEILME 291 (1555)
Q Consensus 232 ~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsi-Lss~D~--~lv~~ALqi~e~Ll~ 291 (1555)
..+|+.-|.++..++...+.+...-+- ..|+.+ |+.++. ..=..|++++..|+.
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~------k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIP------KLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHH------HHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 667777777777777666644433332 333333 444553 334567777777765
No 87
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.11 E-value=1.9e+02 Score=30.58 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=41.4
Q ss_pred HhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 271 LAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 271 Lss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
|.+.++.+.+.||.+++.|++.+.+.|+.++-+...++++.+|...
T Consensus 51 l~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 51 LKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp HTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc
Confidence 3446678999999999999999999999999999999999999875
No 88
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=33.91 E-value=1e+03 Score=29.54 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhh----hcC-------CChhHHHHHHHHHHHHHhhhcCChhhHHHHhhh---hHHHHHHHHhcccCCCC
Q 000409 11 DFVMEAVPLLTNL----LQY-------HDAKVLEHASVCLTRIAEAFASSPDKLDELCNH---GLVTQAATLISTSNSGG 76 (1555)
Q Consensus 11 ~~V~e~~PiL~nv----L~~-------~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~---~Ll~~l~~LL~~~~~~~ 76 (1555)
..+.+-+++|++. ++. .|.+++-+|..|+..+.-.+ +....|-+. -++...+..|...+
T Consensus 31 ~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~----~i~~~l~~d~~~~~i~~~i~~l~~~~--- 103 (372)
T PF12231_consen 31 QALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHP----EIVSTLSDDFASFIIDHSIESLQNPN--- 103 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccH----HHHhhCChHHHHHHHHHHHHHHcCCC---
Confidence 4567778887775 334 58899999999988766443 333332222 14555566664432
Q ss_pred CCcccCchhHHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCC
Q 000409 77 GQASLSTPTYTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPL 156 (1555)
Q Consensus 77 ~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~l 156 (1555)
.+-++++..+.+|+. ++=++. ++..+.++.|...|.....+ ..++.-+.|.+.++-
T Consensus 104 ----~~K~i~~~~l~~ls~-Q~f~~~----~~~~~~~~~l~~~l~~i~~~---------~~s~si~~erL~i~~------ 159 (372)
T PF12231_consen 104 ----SPKSICTHYLWCLSD-QKFSPK----IMTSDRVERLLAALHNIKNR---------FPSKSIISERLNIYK------ 159 (372)
T ss_pred ----CCHHHHHHHHHHHHc-CCCCCc----ccchhhHHHHHHHHHHhhcc---------CCchhHHHHHHHHHH------
Confidence 355677777777776 444443 22333344444444322210 011222444444333
Q ss_pred CCCCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHH
Q 000409 157 PQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRH 236 (1555)
Q Consensus 157 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~ 236 (1555)
.++...|+.+..=+..-+|.|+.-.-++ ...||.
T Consensus 160 ---------------------------------------------~ll~q~p~~M~~~~~~W~~~l~~~l~~~-~k~ir~ 193 (372)
T PF12231_consen 160 ---------------------------------------------RLLSQFPQQMIKHADIWFPILFPDLLSS-AKDIRT 193 (372)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHH
Confidence 2333355555555566677777776666 688999
Q ss_pred HHHHHHHHHccCCC
Q 000409 237 KCLSVIGKLMYFSS 250 (1555)
Q Consensus 237 k~L~ailk~v~~~~ 250 (1555)
+++.....+.....
T Consensus 194 ~a~~l~~~~~~~l~ 207 (372)
T PF12231_consen 194 KAISLLLEAKKCLG 207 (372)
T ss_pred HHHHHHHHHHHHhC
Confidence 98888776654443
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=1.7e+02 Score=35.15 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=74.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHH--HHhcccCCCCCCcccCchhHHHHHHH
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAA--TLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~--~LL~~~~~~~~~~~ls~~t~~~~Lr~ 92 (1555)
+.+|.|...+..+|-.|-.-|.-.+.||.- | |.-|+.||..+++..+- +|-.-+ +.-.-..++.+
T Consensus 128 eilklildcIggeddeVAkAAiesikrial-f---paaleaiFeSellDdlhlrnlaakc---------ndiaRvRVleL 194 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIAL-F---PAALEAIFESELLDDLHLRNLAAKC---------NDIARVRVLEL 194 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-c---HHHHHHhcccccCChHHHhHHHhhh---------hhHHHHHHHHH
Confidence 467778888888999999999999988863 3 89999999888765432 222222 23345677888
Q ss_pred HHHHhcCCHHHHHHHHhcCchhHHHHHhcC
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILSG 122 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg 122 (1555)
+.-+-+.||..+...-+.|+++.|...|+|
T Consensus 195 IieifSiSpesaneckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 195 IIEIFSISPESANECKKSGLLDLLEAELKG 224 (524)
T ss_pred HHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence 888899999999999999999999999988
No 90
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.59 E-value=4.9e+02 Score=34.00 Aligned_cols=89 Identities=9% Similarity=0.095 Sum_probs=52.9
Q ss_pred CCCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCch
Q 000409 5 LPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTP 84 (1555)
Q Consensus 5 i~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~ 84 (1555)
++..+-+.+++.++++..=-....+.+-..|+++++.++..++.+.+.-...+-..+++.+.+.|......+ +..
T Consensus 387 ~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~ 461 (574)
T smart00638 387 ARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKG-----DEE 461 (574)
T ss_pred hhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcC-----Cch
Confidence 445566777777777765444557789999999999999988765543211111345555555553210000 122
Q ss_pred hHHHHHHHHHHHhc
Q 000409 85 TYTGLIRLLSTCAS 98 (1555)
Q Consensus 85 t~~~~Lr~Ls~la~ 98 (1555)
..+.+|+.|+++..
T Consensus 462 ~~~~~LkaLGN~g~ 475 (574)
T smart00638 462 EIQLYLKALGNAGH 475 (574)
T ss_pred heeeHHHhhhccCC
Confidence 34567888887554
No 91
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.83 E-value=2.2e+02 Score=31.60 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=66.4
Q ss_pred hHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHH
Q 000409 208 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAE 287 (1555)
Q Consensus 208 pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e 287 (1555)
..++++|++.+ ++++.++ +..||+.++..+.-++.+. +....-....|-++.++.++.+=..|.++..
T Consensus 3 s~l~Qryl~~I----l~~~~~~-~~~vr~~Al~~l~~il~qG-------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~ 70 (187)
T PF12830_consen 3 SALVQRYLKNI----LELCLSS-DDSVRLAALQVLELILRQG-------LVNPKQCVPTLIALETSPNPSIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHHH----HHHHhCC-CHHHHHHHHHHHHHHHhcC-------CCChHHHHhHhhhhhCCCChHHHHHHHHHHH
Confidence 34667777555 4566666 8999999998888777552 2222222345555777788888899999999
Q ss_pred HHHHhChhhHHHHHHHhcHHHHHHHHh
Q 000409 288 ILMEKLPGTFSKMFVREGVVHAVDQLI 314 (1555)
Q Consensus 288 ~Ll~Klpd~f~~~F~REGV~~~I~~La 314 (1555)
.|.+|.|+.+...+. +||-...+--.
T Consensus 71 ~l~eK~~s~v~~~~~-~gi~~af~~~~ 96 (187)
T PF12830_consen 71 ELHEKHESLVESRYS-EGIRLAFDYQR 96 (187)
T ss_pred HHHHHhHHHHHHHHH-HHHHHHHHHHH
Confidence 999999997776654 58876665443
No 92
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=32.29 E-value=1.5e+03 Score=30.98 Aligned_cols=56 Identities=21% Similarity=0.364 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhccc
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 72 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~ 72 (1555)
+.+..+++.|..+++|..+.|--.|.+||..| |+.++++..++ |++..+..|+..+
T Consensus 123 el~~~~~~~ik~~l~d~~ayVRk~Aalav~kl---y~ld~~l~~~~---g~~~~l~~l~~D~ 178 (757)
T COG5096 123 ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKL---YRLDKDLYHEL---GLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH---HhcCHhhhhcc---cHHHHHHHHhhCC
Confidence 46777899999999999999999999998876 44455544333 3444445555444
No 93
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=31.83 E-value=1.5e+02 Score=31.56 Aligned_cols=83 Identities=20% Similarity=0.140 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHH
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLI 90 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~L 90 (1555)
.-.++++-.|..+|+|.+++|.=.|...+--++.+. .+..-.++++.+++..+++|+.... .|++ .......++|
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evas~~Fl~el~kl~~~k~-~~~~--~~~~Vk~kil 108 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNC--GERFHSEVGKFRFLNELIKLVSPKY-LGSR--TSEKVKTKII 108 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHHhHHHHHHHHHHhcccc-CCCC--CCHHHHHHHH
Confidence 467899999999999999999988888777777776 3445588889999999999995421 0111 2456677777
Q ss_pred HHHHHHhc
Q 000409 91 RLLSTCAS 98 (1555)
Q Consensus 91 r~Ls~la~ 98 (1555)
.++-.-+.
T Consensus 109 ~li~~W~~ 116 (139)
T cd03567 109 ELLYSWTL 116 (139)
T ss_pred HHHHHHHH
Confidence 77766554
No 94
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=31.56 E-value=1.9e+02 Score=35.99 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHH
Q 000409 13 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 13 V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~ 92 (1555)
+.+++..|.++.++.|+.|-++.|.++-.||-- +.|.=..+++.|=-.-++.+|-+.++...+. ...-..-...+
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd---n~E~R~a~~~lgGaqivid~L~~~cs~d~~a--ne~~~~v~~g~ 159 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYD---NNENRAAFFNLGGAQIVIDVLKPYCSKDNPA--NEEYSAVAFGV 159 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhcc---CchhHHHHHhcCCceehHhhhccccccCCcc--HHHHHHHHHHH
Confidence 478899999999999999999999999998743 3444445555442222344443222111011 11122335678
Q ss_pred HHHHhcCCHHHHHHHHhcCchhHHHHHh
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDIL 120 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iL 120 (1555)
|.+..-++..+.+.++++|+..||..++
T Consensus 160 l~Ny~l~~~~l~aq~~~~gVl~tL~~~~ 187 (604)
T KOG4500|consen 160 LHNYILDSRELRAQVADAGVLNTLAITY 187 (604)
T ss_pred HHHhhCCcHHHHHHHHhcccHHHHHHHh
Confidence 8999999999999999999999998887
No 95
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.35 E-value=8.1e+02 Score=32.75 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchh--
Q 000409 8 DAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPT-- 85 (1555)
Q Consensus 8 ~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t-- 85 (1555)
+|.-...+-..-+..+|+-+|-.||..+..-|.-||.. ...=..-|=.-.+..|-++...+ .+.+..-|
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~----~p~~yk~~~~~avs~L~riv~~~-----~t~~qdYTyy 250 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKK----NPESYKTCLPLAVSRLSRIVVVV-----GTSLQDYTYY 250 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHc----CCHHHhhhHHHHHHHHHHHHhhc-----ccchhhceee
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCC
Q 000409 86 -------YTGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQ 158 (1555)
Q Consensus 86 -------~~~~Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~ 158 (1555)
.++++|+|.+. |..-..=-+.-+.++|..||++--++.+.....-...-.-=++|+++||--|=|
T Consensus 251 ~vP~PWL~vKl~rlLq~~----p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~---- 322 (938)
T KOG1077|consen 251 FVPAPWLQVKLLRLLQIY----PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS---- 322 (938)
T ss_pred cCCChHHHHHHHHHHHhC----CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC----
Q ss_pred CCccCCCCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHH
Q 000409 159 GTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKC 238 (1555)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~ 238 (1555)
.|+++.+=++.| --|-+.=...|||..
T Consensus 323 ------------------------------------------------e~~ll~~~~~~L-----g~fls~rE~NiRYLa 349 (938)
T KOG1077|consen 323 ------------------------------------------------EPELLSRAVNQL-----GQFLSHRETNIRYLA 349 (938)
T ss_pred ------------------------------------------------cHHHHHHHHHHH-----HHHhhcccccchhhh
Q ss_pred HHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHH-------------HHHHHHHHhChhhHHHHHHHhc
Q 000409 239 LSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSL-------------QIAEILMEKLPGTFSKMFVREG 305 (1555)
Q Consensus 239 L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~AL-------------qi~e~Ll~Klpd~f~~~F~REG 305 (1555)
|-.+.++.+. +.-.+.+|.. ..-.|-++-.-+|-++.--|+ +|++-|++=++. ...=.||-
T Consensus 350 LEsm~~L~ss---~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~t--Ad~siree 423 (938)
T KOG1077|consen 350 LESMCKLASS---EFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET--ADYSIREE 423 (938)
T ss_pred HHHHHHHHhc---cchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh--cchHHHHH
Q ss_pred HHHHHHHHhh
Q 000409 306 VVHAVDQLIL 315 (1555)
Q Consensus 306 V~~~I~~La~ 315 (1555)
++-+|.-|++
T Consensus 424 ivlKvAILaE 433 (938)
T KOG1077|consen 424 IVLKVAILAE 433 (938)
T ss_pred HHHHHHHHHH
No 96
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.82 E-value=4e+02 Score=35.67 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=50.9
Q ss_pred HHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhH
Q 000409 224 QIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTF 297 (1555)
Q Consensus 224 ~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f 297 (1555)
..|..-|+...-+|+++||.++---... . +..++.+|..+=...|. +|..+...+..++.|.|..|
T Consensus 356 ~eYatevD~~fvrkaIraig~~aik~e~-----~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 356 KEYATEVDVDFVRKAVRAIGRLAIKAEQ-----S--NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKY 421 (734)
T ss_pred HHhhhhhCHHHHHHHHHHhhhhhhhhhh-----h--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCch
Confidence 3589999999999999999998633222 2 66777777766555554 78888899999999999877
No 97
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.70 E-value=3.8e+02 Score=36.03 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=66.0
Q ss_pred HHHHHHHhhhc--CChhhHHHHhh------hhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 000409 37 VCLTRIAEAFA--SSPDKLDELCN------HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKTLL 108 (1555)
Q Consensus 37 ~c~~rIvdsf~--~~~~~Le~L~~------~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~Ll 108 (1555)
|.|..+||-|- ++..-++=|+. .+++..|...+ ..+.+.+.+|.+|+.+++.-|--.-.++
T Consensus 39 ~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~-----------~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~ 107 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYF-----------VKPSYRLQALTLLGHFVRSQPPWLYKIL 107 (668)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHH-----------cCchhHHHHHHHHHHHHhcCCchHHHHh
Confidence 44666777762 33444444553 23555555555 2456889999999999998888888888
Q ss_pred hcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCC
Q 000409 109 HLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQ 158 (1555)
Q Consensus 109 ~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~ 158 (1555)
+..+...|...|.-.. ..--|.-.+.+|.-|||-+|.
T Consensus 108 ~t~Lf~~LLk~L~~D~-------------~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 108 QTPLFKSLLKCLQFDT-------------SITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred cChhHHHHHHHHhhcc-------------cHHHHHHHHHHHHHHhccccc
Confidence 8888888888774321 112356677788889998773
No 98
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=30.54 E-value=1e+03 Score=29.90 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=52.1
Q ss_pred HHHHHhhhcCCCh---hHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHH
Q 000409 17 VPLLTNLLQYHDA---KVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 93 (1555)
Q Consensus 17 ~PiL~nvL~~~D~---~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~L 93 (1555)
+|.|...|..++. .-.+.+.-+++.|+- +++.++.+.- .++..+..++... . +...+..+++.|
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~----~~~i~~~~~~-~ll~kl~~~~~~~-----~---~~~~~~~il~tl 67 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALST----SPQILETLSI-RLLNKLSIVCQSE-----S---SSDYCHAILSTL 67 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHC----ChhHHHHHHH-HHHHHHHHHhcCC-----C---ChHHHHHHHHHH
Confidence 4667777777766 455555555555554 4567777765 6666666666322 1 344555566666
Q ss_pred HHHhcCCHHHH----HHH-HhcCchhHHHHHhcC
Q 000409 94 STCASGSPLCA----KTL-LHLGISGILKDILSG 122 (1555)
Q Consensus 94 s~la~~Sp~ls----~~L-l~~~i~~tL~~iLtg 122 (1555)
..+...+...- ... ++..+++.+..+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~ 101 (415)
T PF12460_consen 68 QSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQ 101 (415)
T ss_pred HHHHHhcccccccchHHHHHHhHHHHHHHHHHHh
Confidence 55544443322 233 334466666666643
No 99
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.53 E-value=2.8e+02 Score=37.23 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=70.9
Q ss_pred HHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhCh
Q 000409 215 GMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLP 294 (1555)
Q Consensus 215 ~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klp 294 (1555)
+.+|.|-.-+..+.. ++.||+|++-|..|++-- .|+...-.+ .-.+..|..+++-+++++|+++--|++..|
T Consensus 140 ardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK-~P~l~e~f~------~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 ARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRK-VPDLVEHFV------IAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHc-CchHHHHhh------HHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 457789989999985 999999999999999844 233333222 445677888999999999999999999988
Q ss_pred hhHHHHHHH--hcHHHHHHHHhhcC
Q 000409 295 GTFSKMFVR--EGVVHAVDQLILAG 317 (1555)
Q Consensus 295 d~f~~~F~R--EGV~~~I~~La~~~ 317 (1555)
|. +.+|+. ++.++-+++|....
T Consensus 212 ~~-l~~fr~l~~~lV~iLk~l~~~~ 235 (866)
T KOG1062|consen 212 DA-LSYFRDLVPSLVKILKQLTNSG 235 (866)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 74 455554 57777777777643
No 100
>PRK09687 putative lyase; Provisional
Probab=30.46 E-value=9.9e+02 Score=28.41 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHh---hhccchHHHHHHHHhc-CCCchHHHHHHHHHHHHHh
Q 000409 217 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSL---LSVTNISSFLAGVLAW-KDPHVLIPSLQIAEILMEK 292 (1555)
Q Consensus 217 ~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~v---lk~~~isS~LAsiLss-~D~~lv~~ALqi~e~Ll~K 292 (1555)
...|.|+...... +..||..+++++.++= ++..+..+ ++...+.--.+.-|.. .|+ -|+-..+-|+++
T Consensus 192 ~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~---~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~----~a~p~L~~l~~~ 263 (280)
T PRK09687 192 DIREAFVAMLQDK-NEEIRIEAIIGLALRK---DKRVLSVLIKELKKGTVGDLIIEAAGELGDK----TLLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHccC---ChhHHHHHHHHHcCCchHHHHHHHHHhcCCH----hHHHHHHHHHhh
Confidence 3456677777655 8999999999998854 44544444 3333332222222332 343 466677778888
Q ss_pred ChhhHHHHHHHh
Q 000409 293 LPGTFSKMFVRE 304 (1555)
Q Consensus 293 lpd~f~~~F~RE 304 (1555)
.+|.+.....+|
T Consensus 264 ~~d~~v~~~a~~ 275 (280)
T PRK09687 264 FDDNEIITKAID 275 (280)
T ss_pred CCChhHHHHHHH
Confidence 888777666544
No 101
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=29.85 E-value=1.1e+02 Score=41.22 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=73.3
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhc----------------------------
Q 000409 209 ELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSV---------------------------- 260 (1555)
Q Consensus 209 e~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~---------------------------- 260 (1555)
=.=+||.-+++|+|++-|. |+...+|.--|.++-.++.+...+.+..-...
T Consensus 859 LykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 859 LYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 3457899999999999999 88999999999999988887766544221111
Q ss_pred ----cc----hHHHHHHHHh---cCCC---chHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhh
Q 000409 261 ----TN----ISSFLAGVLA---WKDP---HVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 261 ----~~----isS~LAsiLs---s~D~---~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~ 315 (1555)
.. +++++-..|+ ..|. .+-..|||+.+.|.+++|--++..|+++ |+..|.+..+
T Consensus 938 ~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~-Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 938 TESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPL-VLRALIKILD 1005 (1030)
T ss_pred HhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHH-HHHHhhhccC
Confidence 11 2222333333 1231 2446799999999999999999999886 5555554444
No 102
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.78 E-value=2e+02 Score=35.10 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=67.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhh--HHHHHHHHhcccCCCCCCcccCchhHHHHHHH
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~--Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~ 92 (1555)
..+|.|-.+|.+.|..|-+.+|.+++.|.--- -.=..|+..+ |++++++|+-.+ ++-...+.=-.
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~---------s~kvkcqA~lA 274 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR----RARKILAQAEPKLVPALVDLMDDG---------SDKVKCQAGLA 274 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCC---------ChHHHHHHHHH
Confidence 35799999999999999999999999986432 2234556555 999999999544 33344344445
Q ss_pred HHHHhcCCHHHHHHHHhcCchhHHHHHhc
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILS 121 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLt 121 (1555)
|.++++ -.+.-.++.+.|-.+.+..+|.
T Consensus 275 Lrnlas-dt~Yq~eiv~ag~lP~lv~Llq 302 (550)
T KOG4224|consen 275 LRNLAS-DTEYQREIVEAGSLPLLVELLQ 302 (550)
T ss_pred Hhhhcc-cchhhhHHHhcCCchHHHHHHh
Confidence 556554 3567788888898888888884
No 103
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=29.77 E-value=2.4e+02 Score=35.06 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHHHhhhcCChhhHHHHhh-hhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHHHH
Q 000409 28 DAKVLEHASVCLTRIAEAFASSPDKLDELCN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAKT 106 (1555)
Q Consensus 28 D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~-~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~~ 106 (1555)
=+..+-....++.+++..-....+.+.-|++ ..|+..|..+|.+. ..-++..+...+.+++.+...-|..--.
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~------~~FG~~v~s~a~~ivs~~I~nePT~~~~ 146 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENP------EVFGPSVFSLAINIVSDFIHNEPTSFSI 146 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCc------cccchHHHHHHHHHHHHHHhcCCchhHH
Confidence 3556666677777777721245788888999 77888888888553 2468889999999999999999999999
Q ss_pred HHhcCchhHHHHHhc
Q 000409 107 LLHLGISGILKDILS 121 (1555)
Q Consensus 107 Ll~~~i~~tL~~iLt 121 (1555)
|-+.|+.+++.+.++
T Consensus 147 l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 147 LQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHcCChHHHHHHHh
Confidence 999999999999997
No 104
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.86 E-value=7.1e+02 Score=27.33 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=75.3
Q ss_pred HHHHHHhhhcCCC------hhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHH
Q 000409 16 AVPLLTNLLQYHD------AKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 89 (1555)
Q Consensus 16 ~~PiL~nvL~~~D------~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~ 89 (1555)
=++.|..++.... ..++..+..||..+.|--.-.++. .+...|+++...+... ...+++....
T Consensus 12 Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~----l~~~FI~Kia~~Vn~~-------~~d~~i~q~s 80 (160)
T PF11841_consen 12 GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDT----LSDSFIKKIASYVNSS-------AMDASILQRS 80 (160)
T ss_pred CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhh----ccHHHHHHHHHHHccc-------cccchHHHHH
Confidence 3556666654443 367777888888888843334543 4456789999999422 2377889999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhH-HHHHHHHHhhCCC
Q 000409 90 IRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQI-FEIVNLANELLPP 155 (1555)
Q Consensus 90 Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql-~evl~LI~eLLP~ 155 (1555)
|.+|-.++.+|+.+-..+-+.==.+.|-..|.+ +.+++ ..++.||..|+=.
T Consensus 81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~---------------~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQV---------------SNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc---------------CCHHHHHHHHHHHHHHHhc
Confidence 999999999999877666664433344444433 23344 5588889988663
No 105
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=28.72 E-value=3.1e+02 Score=29.31 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHH
Q 000409 12 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 91 (1555)
Q Consensus 12 ~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr 91 (1555)
..+|++-.|..+|+|.+++|+=.|..-+--++.+. ....-.++++.+++..+.+++... ..+....++|.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~fl~~l~~l~~~~--------~~~~Vk~kil~ 107 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC--GTHFHDEVASREFMDELKDLIKTT--------KNEEVRQKILE 107 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHHccc--------CCHHHHHHHHH
Confidence 57899999999999999999999988777777765 344567888999999999999531 24456666666
Q ss_pred HHHHHh
Q 000409 92 LLSTCA 97 (1555)
Q Consensus 92 ~Ls~la 97 (1555)
++-.-+
T Consensus 108 li~~W~ 113 (142)
T cd03569 108 LIQAWA 113 (142)
T ss_pred HHHHHH
Confidence 666544
No 106
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=27.10 E-value=4.3e+02 Score=36.54 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=62.2
Q ss_pred cCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHH
Q 000409 25 QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCA 104 (1555)
Q Consensus 25 ~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls 104 (1555)
.+.|++|= +.|+-+..++-++ .+-++.+++.+.|..+++|| ++ -|+.--.+|..|-.+++ +++|.
T Consensus 1782 ~~~~~~iq-~LaL~Vi~~~Tan---~~Cv~~~a~~~vL~~LL~lL-HS---------~PS~R~~vL~vLYAL~S-~~~i~ 1846 (2235)
T KOG1789|consen 1782 CRKHPKLQ-ILALQVILLATAN---KECVTDLATCNVLTTLLTLL-HS---------QPSMRARVLDVLYALSS-NGQIG 1846 (2235)
T ss_pred HcCCchHH-HHHHHHHHHHhcc---cHHHHHHHhhhHHHHHHHHH-hc---------ChHHHHHHHHHHHHHhc-CcHHH
Confidence 34455544 3444444444444 68899999999999999999 43 24466788999988665 69999
Q ss_pred HHHHhcCchhHHHHHhcCC
Q 000409 105 KTLLHLGISGILKDILSGS 123 (1555)
Q Consensus 105 ~~Ll~~~i~~tL~~iLtg~ 123 (1555)
++-+++|-..-|..|++..
T Consensus 1847 keA~~hg~l~yil~~~c~~ 1865 (2235)
T KOG1789|consen 1847 KEALEHGGLMYILSILCLT 1865 (2235)
T ss_pred HHHHhcCchhhhhHHHhcc
Confidence 9999999888888888763
No 107
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=26.95 E-value=98 Score=37.94 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCCCCCCChhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHh
Q 000409 2 CKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLI 69 (1555)
Q Consensus 2 Cr~i~~~~F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL 69 (1555)
|-.+..+. ..-++++-.|..+|+|.|+.||=.|..-+--++.+.. .-.-.++++.++...+-+||
T Consensus 33 CD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg--~~~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 33 CDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCG--KRFRLEVSSRDFTTELRALI 97 (462)
T ss_pred HHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc--hHHHHHHhhhhHHHHHHHHH
Confidence 55565544 7889999999999999999999999888888887762 22335667777766666666
No 108
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.68 E-value=1.2e+02 Score=32.09 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhccc
Q 000409 10 ADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 72 (1555)
Q Consensus 10 F~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~ 72 (1555)
-...++++-.|...|+|.+++++-.|..-+--++.+- .+....++++.+++..+.+|+...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc--g~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC--GPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS--HHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHhHHHHHHHHHHHHccC
Confidence 3456899999999999999999999988777777765 345557888989999999999654
No 109
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.40 E-value=2.4e+02 Score=29.59 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhccc
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTS 72 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~ 72 (1555)
...++++-.|...|+|.++.++-.|...+--++.+- ....-.++++.+++..+..++...
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc--g~~f~~ev~s~~fl~~L~~l~~~~ 92 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC--GSKFHLEVASKEFLNELVKLIKPK 92 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CHHHHHHHHhHHHHHHHHHHHcCC
Confidence 457899999999999999999999988888777775 344557888999999999999543
No 110
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=26.07 E-value=1.4e+03 Score=28.93 Aligned_cols=279 Identities=14% Similarity=0.175 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCC-hhhHHHHhhhhHHHHHHHHhcc--cCCCCCCcccCchhHH
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASS-PDKLDELCNHGLVTQAATLIST--SNSGGGQASLSTPTYT 87 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~-~~~Le~L~~~~Ll~~l~~LL~~--~~~~~~~~~ls~~t~~ 87 (1555)
+.+.+.+-.|.+++...+..==|..-.|+.||+--++.. ..... .++++++.+|.. -||. .|.-..
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~-----~il~~L~~il~~v~kNPs------nP~FnH 90 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAV-----EILQHLTAILKEVSKNPS------NPRFNH 90 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHH-----HHHHHHHHHHHHHHTS---------HHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHhCCC------Ccchhh
Confidence 456777888888887777766788899999998887543 22233 344444444431 1222 222222
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCC--CCCCCCcc
Q 000409 88 GLIRLLSTCASGS---PLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLP--PLPQGTIS 162 (1555)
Q Consensus 88 ~~Lr~Ls~la~~S---p~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP--~lP~~~~~ 162 (1555)
-+.-.|+.+.+.. ..-+..-++.-+.+.+..||...- .+. -.-+.+++..+-|+-| ++|.....
T Consensus 91 ylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-------~EF----~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 91 YLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV-------QEF----IPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--------TTT----HHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 3556666554432 223445677778888889996522 111 1246788888888888 55542221
Q ss_pred C--C--CCccccccCCc-----------ccCCCCC-CCCCCCC--------CCCCccc--h-hhHHhhhccCh-HHHHHH
Q 000409 163 L--P--SSSNMFVKGPV-----------VRKSPAS-SSGKQDD--------TNGNASE--V-SAREKLLSDQP-ELLQQF 214 (1555)
Q Consensus 163 ~--~--~~~~~~~~~~~-----------~~~~~~~-~~~~~~~--------~~~~~~~--~-~~R~~ll~~~p-e~~~~f 214 (1555)
+ + .-.-|..+|.+ .+....- ..++-+. -+++... . +-=..++...| +.+..|
T Consensus 160 L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~y 239 (435)
T PF03378_consen 160 LFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPY 239 (435)
T ss_dssp GHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGG
T ss_pred HHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHH
Confidence 1 0 00112223331 0100000 0000000 0000000 0 11122334444 478999
Q ss_pred HHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhcc---chHHHHHHHHh---cC---CCchHHHHHHH
Q 000409 215 GMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVT---NISSFLAGVLA---WK---DPHVLIPSLQI 285 (1555)
Q Consensus 215 ~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~---~isS~LAsiLs---s~---D~~lv~~ALqi 285 (1555)
+..+|-+|..-.+++=....++.++..+.-.+..-.++.|.+++..+ .+.-++..+.- ++ ...--+.++-+
T Consensus 240 l~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGl 319 (435)
T PF03378_consen 240 LKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGL 319 (435)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHH
Confidence 99999999999999988888888888888777777999999988763 23333333311 11 11233455777
Q ss_pred HHHHHHhChhhHHHHHHHhcHHHHHHHHh
Q 000409 286 AEILMEKLPGTFSKMFVREGVVHAVDQLI 314 (1555)
Q Consensus 286 ~e~Ll~Klpd~f~~~F~REGV~~~I~~La 314 (1555)
+.+|.+ .+ .+... ..++...-++.|.
T Consensus 320 tkLL~e-s~-~~~~~-~~~~w~~ll~~Ll 345 (435)
T PF03378_consen 320 TKLLCE-SP-AFLSE-YSQLWPPLLEALL 345 (435)
T ss_dssp HHHHHS-ST-THHHH--CHHHHHHHHHHH
T ss_pred HHHHhc-cH-hhhhH-HHHHHHHHHHHHH
Confidence 777765 22 23333 4444444444443
No 111
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=25.89 E-value=1e+03 Score=32.72 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhcCCChhHHH-HHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHH
Q 000409 11 DFVMEAVPLLTNLLQYHDAKVLE-HASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGL 89 (1555)
Q Consensus 11 ~~V~e~~PiL~nvL~~~D~~vvE-~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~ 89 (1555)
++....+-...|.++-+++..+- .||.+++..+ ++.-|..+-. ++|+-|+||.+.. +..+...+
T Consensus 486 ~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p-~ild~L~qlas~~---------s~evl~ll 550 (1005)
T KOG2274|consen 486 QLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQP-MILDGLLQLASKS---------SDEVLVLL 550 (1005)
T ss_pred hHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-----Cceeccccch-HHHHHHHHHcccc---------cHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHhhCCCCCCCCccCCCCccc
Q 000409 90 IRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNM 169 (1555)
Q Consensus 90 Lr~Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~ 169 (1555)
...|+.+|+..|+-+..+ +.-|.+-+..++..++. .+.=..++-.++.+|+-
T Consensus 551 mE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~------------DP~V~~~~qd~f~el~q--------------- 602 (1005)
T KOG2274|consen 551 MEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSE------------DPQVASLAQDLFEELLQ--------------- 602 (1005)
T ss_pred HHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcC------------CchHHHHHHHHHHHHHH---------------
Q ss_pred cccCCcccCCCCCCCCCCCCCCCCccchhhHHhhhccChHHHHHHHHhHHHHHHHHHhcCC---ChHHHHHHHHHHHHHc
Q 000409 170 FVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSV---NSPVRHKCLSVIGKLM 246 (1555)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLi~vy~ssv---~~~VR~k~L~ailk~v 246 (1555)
..+-..-+...++|.|+.+.++.+ ....+--++-.|--+|
T Consensus 603 -------------------------------------~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 603 -------------------------------------IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred -------------------------------------HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHH
Q ss_pred cCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHH-----HHHHHHhhcCCC
Q 000409 247 YFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVV-----HAVDQLILAGNT 319 (1555)
Q Consensus 247 ~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~-----~~I~~La~~~~~ 319 (1555)
-+..+. |...+-...+..++--.|-+.|+..+..|=.+..-++.+.++--...=...|.. .-+.+|.++..+
T Consensus 646 r~tp~p-L~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~s 722 (1005)
T KOG2274|consen 646 RNTPSP-LPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETS 722 (1005)
T ss_pred hcCCCC-ccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccc
No 112
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=25.81 E-value=4.8e+02 Score=28.57 Aligned_cols=79 Identities=10% Similarity=0.228 Sum_probs=62.3
Q ss_pred HHHHhHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 000409 213 QFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEK 292 (1555)
Q Consensus 213 ~f~~~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~K 292 (1555)
.|++.+...+- ++.++.+|.+.||..+-+||.. ++..-..|-+.+++.+.+.-+-. .|..+-..|+-+.--|+.|
T Consensus 58 ~FI~Kia~~Vn---~~~~d~~i~q~sLaILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 58 SFIKKIASYVN---SSAMDASILQRSLAILESIVLN-SPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHHHHc---cccccchHHHHHHHHHHHHHhC-CHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Confidence 46666644333 6777999999999999999984 55666667778999887777665 6667888999999999999
Q ss_pred Chhh
Q 000409 293 LPGT 296 (1555)
Q Consensus 293 lpd~ 296 (1555)
.++.
T Consensus 133 A~~~ 136 (160)
T PF11841_consen 133 ADDS 136 (160)
T ss_pred CChH
Confidence 9886
No 113
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=25.36 E-value=1.1e+03 Score=30.89 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHH
Q 000409 219 LPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFS 298 (1555)
Q Consensus 219 lPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~ 298 (1555)
.|++..+|.=++. ==-.|+..+-.++.-=+...+++++. ++..+|++|+...-+.+=-.+=|+.++++.-+... .
T Consensus 536 ~~~~a~~~~~~~~--kl~~~isv~~q~l~~eD~~~~~elqS--N~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~-~ 610 (858)
T COG5215 536 SDILAGFYDYTSK--KLDECISVLGQILATEDQLLVEELQS--NYIGVLEAIIRTRRRDIEDVEDQLMELFIRILEST-K 610 (858)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc-C
Confidence 4555555543321 11234444444443333333444443 56788999987654444444556666666655554 6
Q ss_pred HHHHHhcHHHHHHHHhhc
Q 000409 299 KMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 299 ~~F~REGV~~~I~~La~~ 316 (1555)
+.|..+-|+..|..|+..
T Consensus 611 ~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 611 PTTAFGDVYTAISALSTS 628 (858)
T ss_pred CchhhhHHHHHHHHHHHH
Confidence 788899999999999974
No 114
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.31 E-value=97 Score=39.42 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=37.9
Q ss_pred hcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhh
Q 000409 272 AWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 272 ss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~ 315 (1555)
..+.+++.+.||.++|++++.+.+.|+.++.+++|+++.-++..
T Consensus 48 ~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k 91 (470)
T KOG1087|consen 48 NSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPK 91 (470)
T ss_pred ccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 34556788999999999999999999999999999999655554
No 115
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=24.88 E-value=84 Score=38.26 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCeEEEEECCccCCCCCcHHHHHHHhh
Q 000409 878 PPKLIFTVGGKQLNRHLTIYQAIQRQL 904 (1555)
Q Consensus 878 ~~~l~f~~~~~~l~~~~Ti~~av~~~~ 904 (1555)
...||++-+|++||++||+ ++|+++.
T Consensus 290 ~e~lEl~C~gqvL~~~mtL-aTVr~~~ 315 (331)
T PF11816_consen 290 EEWLELLCNGQVLPPDMTL-ATVRTFI 315 (331)
T ss_pred CceEEEEeCCeEcCCcCCH-HHHHHhh
Confidence 4579999999999999998 8887774
No 116
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=24.64 E-value=2.5e+02 Score=27.78 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=53.5
Q ss_pred cCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHH
Q 000409 228 SSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVR 303 (1555)
Q Consensus 228 ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~R 303 (1555)
+.-.++||-..|..+.|++.--+ ..+..-..+-..+-..|..+|.=+-+.|.+....|..+.|+..++.+.+
T Consensus 13 ~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 13 NDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 44568999999999999998766 2222222333555567777888899999999999999999966555544
No 117
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.60 E-value=1.1e+02 Score=31.98 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHHHHHHHhhc
Q 000409 274 KDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 274 ~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~~I~~La~~ 316 (1555)
.++++.+.||.+++.|++.+...|..++.....++++.+|...
T Consensus 49 ~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 49 GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 4557889999999999999999999999998888889888864
No 118
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=23.64 E-value=4.7e+02 Score=25.88 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred hhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhh-hhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCC
Q 000409 22 NLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCN-HGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGS 100 (1555)
Q Consensus 22 nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~-~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~S 100 (1555)
.-|+..+.-|--++..-+.+++.+-. +.... ..++.-++..|.+. .+=+|+.+|+.|+.||..-
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~------~~~~~~~~il~l~l~~L~d~---------DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS------EPVIDIPKILDLFLSQLKDE---------DSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC------cchhhHHHHHHHHHHHcCCC---------CchHHHHHHHHHHHHHHHC
Confidence 33566777888889999999998853 11221 24555555666554 4569999999999999999
Q ss_pred HH-HHHHHHh
Q 000409 101 PL-CAKTLLH 109 (1555)
Q Consensus 101 p~-ls~~Ll~ 109 (1555)
|+ +...|++
T Consensus 75 p~~vl~~L~~ 84 (92)
T PF10363_consen 75 PDEVLPILLD 84 (92)
T ss_pred hHHHHHHHHH
Confidence 98 5555554
No 119
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.15 E-value=4.6e+02 Score=27.41 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHH
Q 000409 12 FVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIR 91 (1555)
Q Consensus 12 ~V~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr 91 (1555)
..++++-.|...|+|.++.+.-.|...+--++.+- .+..-.++++.+.+..+..++... +.....+..++|.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc--g~~f~~~i~s~~fl~~l~~l~~~~------~~~~~~Vk~kil~ 105 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNC--GKPFHLQVADKEFLLELVKIAKNS------PKYDPKVREKALE 105 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--ChHHHHHHhhHHHHHHHHHHhCCC------CCCCHHHHHHHHH
Confidence 56889999999999999999999988777777765 222446677778888899999542 1135567777777
Q ss_pred HHHHHhc
Q 000409 92 LLSTCAS 98 (1555)
Q Consensus 92 ~Ls~la~ 98 (1555)
++...+.
T Consensus 106 ll~~W~~ 112 (133)
T cd03561 106 LILAWSE 112 (133)
T ss_pred HHHHHHH
Confidence 7766544
No 120
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=23.13 E-value=2e+02 Score=31.35 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhhhcC-CChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhh
Q 000409 12 FVMEAVPLLTNLLQY-HDAKVLEHASVCLTRIAEAFASSPDKLDELCNHG 60 (1555)
Q Consensus 12 ~V~e~~PiL~nvL~~-~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~ 60 (1555)
.-..-+..|..+|+. +++.+.+.+|.++.+|.+.-+..|+.-.++..+.
T Consensus 64 ~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~ 113 (165)
T PF08167_consen 64 HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPN 113 (165)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhcc
Confidence 334445556666655 4677899999999999999999999998888765
No 121
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=22.62 E-value=7.1e+02 Score=32.41 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhh
Q 000409 217 DLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGT 296 (1555)
Q Consensus 217 ~LlPvLi~vy~ssv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~ 296 (1555)
.|+-+|+.+..++-..-|--.++.+|..+.......-=+.+- .+.-+|..-|+..|..+...|..++--|-.-+...
T Consensus 597 ~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~---~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 597 QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS---KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh
Confidence 467778888888855556677888888776433322222232 34456778888899888888888887777777666
Q ss_pred HHHH
Q 000409 297 FSKM 300 (1555)
Q Consensus 297 f~~~ 300 (1555)
|..+
T Consensus 674 f~~y 677 (858)
T COG5215 674 FNIY 677 (858)
T ss_pred HHHH
Confidence 6443
No 122
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=4e+02 Score=34.74 Aligned_cols=192 Identities=21% Similarity=0.213 Sum_probs=108.7
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHH
Q 000409 14 MEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLL 93 (1555)
Q Consensus 14 ~e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~L 93 (1555)
..+.+.|-.+++..+..--..|...+.+++.++ .++.+...+++.++...+..-++. .... ..++
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-----~i~~~~~~~~l~~l~~ai~dk~~~-----~~re-----~~~~ 197 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-----GIESLKEFGFLDNLSKAIIDKKSA-----LNRE-----AALL 197 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-----HHhhhhhhhHHHHHHHHhcccchh-----hcHH-----HHHH
Confidence 345666666777777777777777788877776 566666677777777777543211 1110 0001
Q ss_pred HHHhcCCHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHH---------hhCCCCCCCCccCC
Q 000409 94 STCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLAN---------ELLPPLPQGTISLP 164 (1555)
Q Consensus 94 s~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~---------eLLP~lP~~~~~~~ 164 (1555)
+. ...+-.+. ...+-.|++.++-+|+......+. + . +=..++++-|- .|||++=.+...
T Consensus 198 a~-~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~-V---r----~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-- 265 (569)
T KOG1242|consen 198 AF-EAAQGNLG-PPFEPYIVPILPSILTNFGDKINK-V---R----EAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-- 265 (569)
T ss_pred HH-HHHHHhcC-CCCCchHHhhHHHHHHHhhccchh-h---h----HHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH--
Confidence 10 00011111 445567788888888765321110 0 0 01122222111 233322111110
Q ss_pred CCccccccCCcccCCCCCCCCCCCCCCCCccchhhHHh----hhccChHHHHHHHHhHHHHHHHHHhcCCChHHHHHHHH
Q 000409 165 SSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREK----LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLS 240 (1555)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~----ll~~~pe~~~~f~~~LlPvLi~vy~ssv~~~VR~k~L~ 240 (1555)
..| .....-.+ +..-.|..+..++..|+|.|.++...| .+.||.....
T Consensus 266 --~kW-------------------------rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~ 317 (569)
T KOG1242|consen 266 --AKW-------------------------RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIE 317 (569)
T ss_pred --Hhh-------------------------hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHH
Confidence 011 00011111 222358899999999999999999999 8999999999
Q ss_pred HHHHHccCCCHHHHHHhhhc
Q 000409 241 VIGKLMYFSSAEMIQSLLSV 260 (1555)
Q Consensus 241 ailk~v~~~~~~~L~~vlk~ 260 (1555)
+|.|.....+...|..+...
T Consensus 318 ~l~~~~svidN~dI~~~ip~ 337 (569)
T KOG1242|consen 318 TLLKFGSVIDNPDIQKIIPT 337 (569)
T ss_pred HHHHHHHhhccHHHHHHHHH
Confidence 99999999887777666544
No 123
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=21.43 E-value=2.9e+02 Score=33.67 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhh--HHHHHHHHhcccCCCCCCcccCchhHHHHHHHHHHHhcCCHHHHH
Q 000409 28 DAKVLEHASVCLTRIAEAFASSPDKLDELCNHG--LVTQAATLISTSNSGGGQASLSTPTYTGLIRLLSTCASGSPLCAK 105 (1555)
Q Consensus 28 D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~--Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls~la~~Sp~ls~ 105 (1555)
=+++|.-=|+||+-++-.+ ..++....++..+ ++..|+.||...+ .+...+.+-.|+.|..++...+....
T Consensus 232 R~~~l~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~------~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 232 RRQLLQIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEE------KVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHhccccHHH
Confidence 3567777788888887776 6788999999776 9999999997653 36778999999999999997766655
Q ss_pred H
Q 000409 106 T 106 (1555)
Q Consensus 106 ~ 106 (1555)
.
T Consensus 305 V 305 (329)
T PF06012_consen 305 V 305 (329)
T ss_pred H
Confidence 3
No 124
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.75 E-value=3.5e+02 Score=28.85 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhhcCC-ChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHH-HHHHhcccCCCCCC
Q 000409 1 MCKKLPSDAADFVMEAVPLLTNLLQYH-DAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQ-AATLISTSNSGGGQ 78 (1555)
Q Consensus 1 ~Cr~i~~~~F~~V~e~~PiL~nvL~~~-D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~-l~~LL~~~~~~~~~ 78 (1555)
+|-.|.. ...-.++++-.|..+|++. +++|+-.|..-+--++.+- ......++++.+++.. ++++|......
T Consensus 25 icD~In~-~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNC--G~~fh~eiask~Fl~e~L~~~i~~~~~~--- 98 (141)
T cd03565 25 ICDIINE-TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNC--GHRFHVLVAKKDFIKDVLVKLINPKNNP--- 98 (141)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHhhhHHHHHHHcccCCC---
Q ss_pred cccCchhHHHHHHHHHHHh
Q 000409 79 ASLSTPTYTGLIRLLSTCA 97 (1555)
Q Consensus 79 ~~ls~~t~~~~Lr~Ls~la 97 (1555)
.......+|.++-..+
T Consensus 99 ---~~~Vk~kil~li~~W~ 114 (141)
T cd03565 99 ---PTIVQEKVLALIQAWA 114 (141)
T ss_pred ---cHHHHHHHHHHHHHHH
No 125
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.64 E-value=2.2e+02 Score=22.48 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcc
Q 000409 218 LLPVLIQIYGSSVNSPVRHKCLSVIGKLMY 247 (1555)
Q Consensus 218 LlPvLi~vy~ssv~~~VR~k~L~ailk~v~ 247 (1555)
.+|.|++...+. +..|++.++++|.++.+
T Consensus 13 ~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 678888887744 89999999999998863
No 126
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.57 E-value=2e+02 Score=35.05 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=70.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHHhhhcCChhhHHHHhhhhHHHHHHHHhcccCCCCCCcccCchhHHHHHHHHH
Q 000409 15 EAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRLLS 94 (1555)
Q Consensus 15 e~~PiL~nvL~~~D~~vvE~a~~c~~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~~~~~~~~~ls~~t~~~~Lr~Ls 94 (1555)
..+|.|-.+||+.=-+.+--..-||-.|.- +|-.=--+++.|+++-+++||.-.+ +-.........|.
T Consensus 292 g~lP~lv~Llqs~~~plilasVaCIrnisi----hplNe~lI~dagfl~pLVrlL~~~d--------nEeiqchAvstLr 359 (550)
T KOG4224|consen 292 GSLPLLVELLQSPMGPLILASVACIRNISI----HPLNEVLIADAGFLRPLVRLLRAGD--------NEEIQCHAVSTLR 359 (550)
T ss_pred CCchHHHHHHhCcchhHHHHHHHHHhhccc----ccCcccceecccchhHHHHHHhcCC--------chhhhhhHHHHHH
Confidence 357999999977755555555566644432 2333334668899999999997653 3335666788889
Q ss_pred HHhcCCHHHHHHHHhcCchhHHHHHhcC
Q 000409 95 TCASGSPLCAKTLLHLGISGILKDILSG 122 (1555)
Q Consensus 95 ~la~~Sp~ls~~Ll~~~i~~tL~~iLtg 122 (1555)
++|.+|..=...+++.|.++.|..++--
T Consensus 360 nLAasse~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 360 NLAASSEHNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence 9999999999999999999999998854
No 127
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=20.11 E-value=2.5e+02 Score=30.37 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=66.5
Q ss_pred CCChHHHHHHHHHHHHHccCCCHHHHHHhhhccchHHHHHHHHhcCCCchHHHHHHHHHHHHHhChhhHHHHHHHhcHHH
Q 000409 229 SVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVH 308 (1555)
Q Consensus 229 sv~~~VR~k~L~ailk~v~~~~~~~L~~vlk~~~isS~LAsiLss~D~~lv~~ALqi~e~Ll~Klpd~f~~~F~REGV~~ 308 (1555)
.....||..++.++.|.. +.-++- -..-+..|+-..+...+..-.+.|+..+..|+.-.||+=...|.+||++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l-----~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-----DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHH
T ss_pred CCCHhHHHHHHHHHHHHH-----HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHH
Confidence 567899999999999994 111111 12456688888888777778889999999999999999999999999999
Q ss_pred HHHHHhh
Q 000409 309 AVDQLIL 315 (1555)
Q Consensus 309 ~I~~La~ 315 (1555)
.+..++.
T Consensus 90 ~l~~~~~ 96 (157)
T PF11701_consen 90 SLLPLAS 96 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999887
No 128
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=20.02 E-value=1.7e+02 Score=32.75 Aligned_cols=56 Identities=14% Similarity=0.334 Sum_probs=44.2
Q ss_pred ccChHHHHHHHHhHHHHHHHHHhcCCCh----HHHHHHHHHHHH-HccCCCHHHHHHhhhc
Q 000409 205 SDQPELLQQFGMDLLPVLIQIYGSSVNS----PVRHKCLSVIGK-LMYFSSAEMIQSLLSV 260 (1555)
Q Consensus 205 ~~~pe~~~~f~~~LlPvLi~vy~ssv~~----~VR~k~L~ailk-~v~~~~~~~L~~vlk~ 260 (1555)
...+...+.+=+.|||+|+.||+-+-+. .||...|+.+.| ++|+=..++|..+|..
T Consensus 115 ~~~~~swr~lR~~I~~tLyaifqqsrG~~~~~kikNRtlrSlTRr~Lyh~~e~~l~r~l~d 175 (187)
T PF11081_consen 115 RQEYRSWRELRNRIFPTLYAIFQQSRGNEQELKIKNRTLRSLTRRCLYHRGEDQLQRTLED 175 (187)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3466778888899999999999886554 899999998876 5666677777877765
Done!