Query 000409
Match_columns 1555
No_of_seqs 371 out of 1584
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:07:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000409.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_187-191//hhsearch_pdb/000409hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 1.0 1 1 690.0 31.0 373 1080-1555 16-405 (405)
2 1zvd_A SMAD ubiquitination reg 1.0 1 1 689.2 26.7 362 1089-1555 3-380 (380)
3 2oni_A E3 ubiquitin-protein li 1.0 1 1 684.9 25.7 367 1078-1547 10-392 (392)
4 1c4z_A E6AP, ubiquitin-protein 1.0 1 1 682.4 21.6 339 1134-1555 4-358 (358)
5 3olm_A E3 ubiquitin-protein li 1.0 1 1 676.5 24.1 340 1134-1554 73-428 (429)
6 1nd7_A WW domain-containing pr 1.0 1 1 670.3 30.1 357 1089-1549 3-374 (374)
7 3pt3_A E3 ubiquitin-protein li 1.0 1 1 255.0 7.5 109 1425-1554 3-117 (118)
8 3tpo_A Importin subunit alpha- 1.0 1 1 122.8 27.9 268 13-315 74-345 (529)
9 3ul1_B Importin subunit alpha- 1.0 1 1 122.2 27.1 91 215-309 230-320 (510)
10 4b8j_A Importin subunit alpha- 1.0 1 1 113.6 24.5 265 13-316 72-339 (528)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=1.00 E-value=1 Score=689.97 Aligned_cols=373 Identities=29% Similarity=0.468 Sum_probs=322.5
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC--
Q ss_conf 310699435756689878751000079999999840579999973012211543442023570169999999996501--
Q 000409 1080 LTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS-- 1157 (1555)
Q Consensus 1080 l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~~-- 1157 (1555)
....-|. .+|+.|+.||+. .++.... + .+..+.+++|+|++|++|+++++....
T Consensus 16 ~~~~~~~-~~f~~k~~~F~~----------~l~~~~~--~-----------~~~~~~~l~VrR~~i~eds~~~l~~~~~~ 71 (405)
T 3h1d_A 16 VLFQGPH-MDFDVKRKYFRQ----------ELERLDE--G-----------LRKEDMAVHVRRDHVFEDSYRELHRKSPE 71 (405)
T ss_dssp GGGCSTT-SCHHHHHHHHHH----------HHHHHTT--T-----------CCCCEEEEEECGGGHHHHHHHHHTTSCTT
T ss_pred HHHCCCC-CCHHHHHHHHHH----------HHHHHHC--C-----------CCCCCEEEEEECCHHHHHHHHHHHCCCHH
T ss_conf 8614987-688999999999----------9986224--7-----------88986699994860799999999715988
Q ss_pred CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 797417999827632377-5058999999999841378973238999999853468888889877888881206898878
Q 000409 1158 SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFP 1236 (1555)
Q Consensus 1158 ~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP 1236 (1555)
..++.|+|+|.||+|+|. |++||||++|++|+++|+++||+.++. +.+ .++|
T Consensus 72 ~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~----------------------~~~-----~~~~ 124 (405)
T 3h1d_A 72 EMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG----------------------DRV-----TYTI 124 (405)
T ss_dssp GGGSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSS----------------------CSS-----EEEE
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCC----------------------CCE-----EEEE
T ss_conf 7616669997898774787369999999999983986444022268----------------------832-----6730
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999987766887023778997601210110003980256679999999817889935310007999999999999985
Q 000409 1237 RPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVC 1316 (1555)
Q Consensus 1237 ~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~~sL~~L~~~~~ 1316 (1555)
+|.... ..+++.+|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|+++
T Consensus 125 np~s~~--------~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~-- 194 (405)
T 3h1d_A 125 NPSSHA--------NPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN-- 194 (405)
T ss_dssp CCC-------------CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHS--
T ss_pred CCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 773225--------7557789998869999999389825877629999982699897898987549999998666509--
Q ss_pred HHHHHHCCCCCCCCCHHCCCCCCCCCCC--CCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 4432100136761101113335885344--53201149----9-97210389997--67746188999999998765117
Q 000409 1317 RKQHLESMTSDNCEEVVDLRFRGAPIED--LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGI 1387 (1555)
Q Consensus 1317 ~k~~i~~~~~~~~~~~~~l~~~~~~ied--L~L~Ftlp----g-~~~~eL~pgG~--~VT~~N~~eYV~~v~~~~L~~gv 1387 (1555)
++++ ++|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+.+|
T Consensus 195 ------------------------~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v 250 (405)
T 3h1d_A 195 ------------------------DVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAI 250 (405)
T ss_dssp ------------------------CGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGG
T ss_pred ------------------------CHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------85564341489998523786236860578977742667689999999999998779
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHC
Q ss_conf 99999998302213343223588998898631389876898887432184487799986899999998129999998643
Q 000409 1388 MRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFC 1467 (1555)
Q Consensus 1388 ~~q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FL 1467 (1555)
+.|++||++||++|+|..+|++|+|+||+.|+||.++ ||+++|+++++|. ||+.+|++|+|||+|+++|+.+||++||
T Consensus 251 ~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s~eer~~fL 328 (405)
T 3h1d_A 251 RKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFDQADRAKFL 328 (405)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999998702888757999999998488777-9999998308034-8898870474499899749999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0003888789999766888-----26897238999988888999999999999967745567103789999999999999
Q 000409 1468 QFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLV 1542 (1555)
Q Consensus 1468 qFvTGs~rLP~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evlkeKL~ 1542 (1555)
||+||++|+|++||++|+| +|+|.+... ++++||+||||||+|+||+|+|+|+||+||+
T Consensus 329 ~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~----------------~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~ 392 (405)
T 3h1d_A 329 QFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR----------------STDRLPSAHTCFNQLDLPAYESFEKLRHMLL 392 (405)
T ss_dssp HHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECS----------------CTTSCCEEEGGGTEEEEECCSSHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----------------CCCCCCCCEECCCEEECCCCCCHHHHHHHHH
T ss_conf 997299988987510036667873079951799----------------8877944000218757989999999999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9998098444479
Q 000409 1543 YAISEGQGSFDLS 1555 (1555)
Q Consensus 1543 ~AI~eg~g~F~LS 1555 (1555)
+||+||+++|+|-
T Consensus 393 ~AI~e~~~GFgla 405 (405)
T 3h1d_A 393 LAIQEASEGFGLA 405 (405)
T ss_dssp HHHHC--------
T ss_pred HHHHHCCCCCCCC
T ss_conf 9998077786879
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=689.23 Aligned_cols=362 Identities=26% Similarity=0.420 Sum_probs=318.4
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-C-CCCCEEEEE
Q ss_conf 75668987875100007999999984057999997301221154344202357016999999999650-1-797417999
Q 000409 1089 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMY-S-SQKAVLEVE 1166 (1555)
Q Consensus 1089 pfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~-~-~~~~~LeVe 1166 (1555)
+|+.|..+|+.. ++..+. ...+.+++|+|++|++|+++.+... + ..++.|+|+
T Consensus 3 ~f~~k~~~f~~~----------l~~~~~---------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~ 57 (380)
T 1zvd_A 3 DLVQKLKILRQE----------LSQQQP---------------QAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIK 57 (380)
T ss_dssp SHHHHHHHHHHH----------HHHHSC---------------SSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHHH----------HHHCCC---------------CCCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCEEEE
T ss_conf 759999999999----------874278---------------8986699976677999999999745979846745999
Q ss_pred ECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 827632377-5058999999999841378973238999999853468888889877888881206898878999999877
Q 000409 1167 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1245 (1555)
Q Consensus 1167 F~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~ 1245 (1555)
|.||+|+|. ||+||||+++++|+++|+++||..++. +.|. ++|+|.+..
T Consensus 58 F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~~-----~~~np~s~~--- 107 (380)
T 1zvd_A 58 FRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRD----------------------DIYT-----LQINPDSAV--- 107 (380)
T ss_dssp ETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETT----------------------EEEE-----EEECTTGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC----------------------CCEE-----ECCCCHHHC---
T ss_conf 7787675888518999999999980876787003688----------------------8713-----435832215---
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66887023778997601210110003980256679999999817889935310007999999999999985443210013
Q 000409 1246 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1325 (1555)
Q Consensus 1246 ~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~k~~i~~~~ 1325 (1555)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 108 -----~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~----------- 171 (380)
T 1zvd_A 108 -----NPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILEN----------- 171 (380)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHC-----------
T ss_conf -----8678999998588887998179524775879999999579887788777689999999998708-----------
Q ss_pred CCCCCCHHCCCCCCCCCCC-CCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 6761101113335885344-53201149----9-97210389997--677461889999999987651179999999830
Q 000409 1326 SDNCEEVVDLRFRGAPIED-LCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAG 1397 (1555)
Q Consensus 1326 ~~~~~~~~~l~~~~~~ied-L~L~Ftlp----g-~~~~eL~pgG~--~VT~~N~~eYV~~v~~~~L~~gv~~q~~Afr~G 1397 (1555)
++++ |+|+|+++ | ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++|
T Consensus 172 ---------------d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~G 236 (380)
T 1zvd_A 172 ---------------DITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKG 236 (380)
T ss_dssp ---------------CCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred ---------------CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------81000234168863037957678527999777144023999999999999987699999999975
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 22133432235889988986313898768988874321844877999868999999981299999986430003888789
Q 000409 1398 FNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLP 1477 (1555)
Q Consensus 1398 F~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP 1477 (1555)
|++|+|..+|++|+|+||+.|+||.++ +|+++|+++++|. ||+.+++.|+|||+||++|+.+||++||||+||++|+|
T Consensus 237 f~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP 314 (380)
T 1zvd_A 237 FNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVP 314 (380)
T ss_dssp HHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHCCEEC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 988758999857999999986489987-7743565331753-88987613626999997289999999999983899889
Q ss_pred CCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999766888-----268972389999888889999999999999677455671037899999999999999998098444
Q 000409 1478 PGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSF 1552 (1555)
Q Consensus 1478 ~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evlkeKL~~AI~eg~g~F 1552 (1555)
++||++|+| +|+|+++.. ++++||+||||||+|+||+|+|+|+||+||++||+||+| |
T Consensus 315 ~~Gf~~L~~~~gp~~f~I~~~~~----------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~G-F 377 (380)
T 1zvd_A 315 LQGFKALQGAAGPRLFTIHQIDA----------------CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG-F 377 (380)
T ss_dssp TTCGGGCEETTEECCEEEEECCC----------------CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCCHHHCCCCCCCCCEEEEECCC----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-C
T ss_conf 86410025667887659995589----------------999897786275887898989999999999999980788-6
Q ss_pred CCC
Q ss_conf 479
Q 000409 1553 DLS 1555 (1555)
Q Consensus 1553 ~LS 1555 (1555)
+|.
T Consensus 378 ~l~ 380 (380)
T 1zvd_A 378 AVE 380 (380)
T ss_dssp ---
T ss_pred CCC
T ss_conf 869
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=1.00 E-value=1 Score=684.90 Aligned_cols=367 Identities=28% Similarity=0.433 Sum_probs=322.7
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 87310699435756689878751000079999999840579999973012211543442023570169999999996501
Q 000409 1078 YQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS 1157 (1555)
Q Consensus 1078 ~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~~ 1157 (1555)
..+...+||.++|+.|+.||+.. +...+ ....+.+++|+|++|++|+++++....
T Consensus 10 ~~~~~~~p~~~~f~~k~~~f~~~----------l~~~~---------------~~~~~~~l~V~R~~i~eds~~~l~~~~ 64 (392)
T 2oni_A 10 GRENLYFQGSREFKQKYDYFRKK----------LKKPA---------------DIPNRFEMKLHRNNIFEESYRRIMSVK 64 (392)
T ss_dssp ----CCSTTHHHHHHHHHHHHHH----------CCCCS---------------SSCSEEEEEECGGGHHHHHHHHHHHCS
T ss_pred HHCCCCCCCCCCHHHHHHHHHHH----------HHCCC---------------CCCCCEEEEECCCCHHHHHHHHHHCCC
T ss_conf 21035798621189999999999----------71254---------------789977999817866999999997659
Q ss_pred ---CCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf ---797417999827632377-5058999999999841378973238999999853468888889877888881206898
Q 000409 1158 ---SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLG 1233 (1555)
Q Consensus 1158 ---~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~G 1233 (1555)
..+..|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.. +.| .
T Consensus 65 ~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~----------------------~~~-----~ 117 (392)
T 2oni_A 65 RPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSAT----------------------DNY-----T 117 (392)
T ss_dssp CGGGGGSEEEEEEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESST----------------------TCC-----C
T ss_pred CHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCC----------------------CCC-----E
T ss_conf 2776274179998787662688438999999999973966687400389----------------------882-----2
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHH
Q ss_conf 87899999987766887023778997601210110003980256679999999817889935310007999999999999
Q 000409 1234 LFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV 1313 (1555)
Q Consensus 1234 LfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~~sL~~L~~ 1313 (1555)
++|+|.+.. . ..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++
T Consensus 118 ~~~np~s~~--~-----~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~ 190 (392)
T 2oni_A 118 LQINPNSGL--C-----NEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILE 190 (392)
T ss_dssp EEECTTHHH--H-----CTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHH
T ss_pred ECCCCCCCC--C-----CHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHC
T ss_conf 302886354--6-----677888887335543044237950376425999999967988788987748999999888864
Q ss_pred HHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC----CC-CCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 985443210013676110111333588534453201149----99-7210389997--6774618899999999876511
Q 000409 1314 IVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GY-PDYILKPGDE--NVDINNLEEYISLVVDATVKTG 1386 (1555)
Q Consensus 1314 ~~~~k~~i~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp----g~-~~~eL~pgG~--~VT~~N~~eYV~~v~~~~L~~g 1386 (1555)
. +++||+|+|+++ |+ .++||+|||+ +||.+|+++||+++++|+|+.+
T Consensus 191 ~--------------------------d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~ 244 (392)
T 2oni_A 191 N--------------------------DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNR 244 (392)
T ss_dssp S--------------------------CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTT
T ss_pred C--------------------------CHHHCEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9--------------------------96573046899410389446896379985673444429999999999988666
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 79999999830221334322358899889863138987689888743218448779998689999999812999999864
Q 000409 1387 IMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAF 1466 (1555)
Q Consensus 1387 v~~q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~F 1466 (1555)
|+.|++||++||++|+|..+|++|+|+||+.|+||..+ +|+++|+++|+|+|||+.++++|+|||+||++|+.+||++|
T Consensus 245 i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~f 323 (392)
T 2oni_A 245 VQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRL 323 (392)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHCCEEECCCCCCCCCHHEEHHHHHHHCCHHHHHHH
T ss_conf 77999999999998566876516999999886068988-78999840158778879987322009999984999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 3000388878999976688-----82689723899998888899999999999996774556710378999999999999
Q 000409 1467 CQFVTGAPRLPPGGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1541 (1555)
Q Consensus 1467 LqFvTGs~rLP~gGf~~L~-----p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evlkeKL 1541 (1555)
||||||++|+|++||++|. ++|+|.+.. .+++||+||||||+|+||+|+|+|+||+||
T Consensus 324 L~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~-----------------~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL 386 (392)
T 2oni_A 324 LQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG-----------------SPEKLPRAHTCFNRLDLPPYETFEDLREKL 386 (392)
T ss_dssp HHHHHSCSCCCTTCGGGCEETTEECCCEEEECS-----------------CTTSCCEEEGGGTEEEECCCSSHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHHCCCCCCCCEEEEECC-----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHH
T ss_conf 998718998898555440456788755997589-----------------888696887256786898989999999999
Q ss_pred HHHHHH
Q ss_conf 999980
Q 000409 1542 VYAISE 1547 (1555)
Q Consensus 1542 ~~AI~e 1547 (1555)
++||++
T Consensus 387 ~~AI~n 392 (392)
T 2oni_A 387 LMAVEN 392 (392)
T ss_dssp HHHHC-
T ss_pred HHHHHC
T ss_conf 999739
No 4
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=1.00 E-value=1 Score=682.39 Aligned_cols=339 Identities=31% Similarity=0.535 Sum_probs=305.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 44202357016999999999650-----1797417999827632377-50589999999998413789732389999998
Q 000409 1134 ERQKVRVSRNRILDSAAKVMEMY-----SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPS 1207 (1555)
Q Consensus 1134 ~r~kv~V~R~~il~sA~~vl~~~-----~~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~ 1207 (1555)
+..+++|+|++|++|++++++.+ ...++.|+|+|.||+|+|. ||+||||+++++|+++|+++||+.++.
T Consensus 4 ~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~----- 78 (358)
T 1c4z_A 4 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDES----- 78 (358)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETT-----
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCC-----
T ss_conf 738999768757999999999873269798657469997787674888639999999999971876795565289-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHH
Q ss_conf 53468888889877888881206898878999999877668870237789976012101100039802566799999998
Q 000409 1208 MEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLV 1287 (1555)
Q Consensus 1208 ~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~l 1287 (1555)
.. .++|+|.+. ...++|+|+|++||+||++++++|++|+++|||+|
T Consensus 79 -----------------~~------~~~~np~s~-----------~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~l 124 (358)
T 1c4z_A 79 -----------------TK------LFWFNPSSF-----------ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 124 (358)
T ss_dssp -----------------TT------EEEECTTCC-----------SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHH
T ss_pred -----------------CC------EEEECCCCC-----------CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf -----------------98------474277322-----------33577886999999999779976876889999999
Q ss_pred HCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCC-CCCCCCCCCC-----CC-CCEECC
Q ss_conf 1788993531000799999999999998544321001367611011133358853-4453201149-----99-721038
Q 000409 1288 LGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPI-EDLCLDFTLP-----GY-PDYILK 1360 (1555)
Q Consensus 1288 lg~~ltl~DL~~vDp~l~~sL~~L~~~~~~k~~i~~~~~~~~~~~~~l~~~~~~i-edL~L~Ftlp-----g~-~~~eL~ 1360 (1555)
+|.+++++||+.+||++|++|++|+++ ++ ++ ++++|+|++. |. .++||+
T Consensus 125 lg~~~~l~Dl~~~Dp~l~~sL~~l~~~-----------------------~~-d~~~~l~ltF~~~~~~~~G~~~~~eL~ 180 (358)
T 1c4z_A 125 MGKKGTFRDLGDSHPVLYQSLKDLLEY-----------------------EG-NVEDDMMITFQISQTDLFGNPMMYDLK 180 (358)
T ss_dssp TTCCCCHHHHHHHSHHHHHHHHHHHHC-----------------------CS-CHHHHTCCBSEEEECCTTTCCEEEESS
T ss_pred HCCCCCHHHHHHHCHHHHHHHHHHHHC-----------------------CC-CHHHHCCCEEEEECCCCCCCEEEEECC
T ss_conf 589998899998699999999999855-----------------------77-666650350787414568975346447
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHCEE
Q ss_conf 9997--67746188999999998765117999999983022133432235-88998898631389876898887432184
Q 000409 1361 PGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKF 1437 (1555)
Q Consensus 1361 pgG~--~VT~~N~~eYV~~v~~~~L~~gv~~q~~Afr~GF~~V~p~~~L~-~Fsp~EL~~licG~~~~w~~e~L~~~~~~ 1437 (1555)
|||+ +||.+|+++||+++++|+|+++|+.|++||++||++|+|...|. +|+|+||+.++||..+ ||+++|+++|+|
T Consensus 181 p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~-id~~~l~~~t~y 259 (358)
T 1c4z_A 181 ENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEY 259 (358)
T ss_dssp TTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCC-CCCTTTSTTCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCC-CCHHHHHHHCEE
T ss_conf 7986665442129999999999986210999999999888873695253348999999998613567-889999987131
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48779998689999999812999999864300038887899997668882689723899998888899999999999996
Q 000409 1438 DHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLP 1517 (1555)
Q Consensus 1438 ~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LP 1517 (1555)
+|||+.++++|+|||+||++|+.+||++||||+||++|+|++||++| +|+|++..+ .+++||
T Consensus 260 ~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~~~----------------~~~~LP 321 (358)
T 1c4z_A 260 DGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGP----------------DTERLP 321 (358)
T ss_dssp ESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEEE----------------SCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEECCCC----------------CCCCCE
T ss_conf 78989776045369999973999999999989708997899885545--246204789----------------888880
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 77455671037899999999999999998098444479
Q 000409 1518 SVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1555 (1555)
Q Consensus 1518 sa~TC~n~LkLP~YsS~evlkeKL~~AI~eg~g~F~LS 1555 (1555)
+||||||+|+||+|+|+|+||+||++||++|+| |+|.
T Consensus 322 ~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~G-Fgl~ 358 (358)
T 1c4z_A 322 TSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG-FGML 358 (358)
T ss_dssp EEEGGGTEEEEEECSCHHHHHHHHHHHHHHC-------
T ss_pred EEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 787357886898989999999999999981899-7849
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=676.48 Aligned_cols=340 Identities=27% Similarity=0.426 Sum_probs=305.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44202357016999999999650--1797417999827632377-50589999999998413789732389999998534
Q 000409 1134 ERQKVRVSRNRILDSAAKVMEMY--SSQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1210 (1555)
Q Consensus 1134 ~r~kv~V~R~~il~sA~~vl~~~--~~~~~~LeVeF~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~ 1210 (1555)
.+.+++|+|++|++|+++.+... .+.++.|+|+|.||+|+|. ||+||||+++++|+++|+++||..+.. +
T Consensus 73 ~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~-~------ 145 (429)
T 3olm_A 73 GQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAY-D------ 145 (429)
T ss_dssp SCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSS-S------
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECC-C------
T ss_conf 855899954211899999998468575186369997998743787449999999999974966799435079-9------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHHHCC
Q ss_conf 68888889877888881206898878999999877668870237789976012101100039802566799999998178
Q 000409 1211 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1290 (1555)
Q Consensus 1211 d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~llg~ 1290 (1555)
.| .++|+|.... ..+++.+|+|+|++||+||++++++|++|+++|||+|+|.
T Consensus 146 ---------------~~-----~~~~np~s~~--------~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 146 ---------------NY-----TIQINPNSGI--------NPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp ---------------SC-----CEEECGGGGG--------STTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred ---------------CE-----EEEECCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf ---------------81-----5756886558--------8778999999999999999669866877689999761399
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCC-CCCCCCCCC----C-CCCEECCCCCC
Q ss_conf 89935310007999999999999985443210013676110111333588534-453201149----9-97210389997
Q 000409 1291 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIE-DLCLDFTLP----G-YPDYILKPGDE 1364 (1555)
Q Consensus 1291 ~ltl~DL~~vDp~l~~sL~~L~~~~~~k~~i~~~~~~~~~~~~~l~~~~~~ie-dL~L~Ftlp----g-~~~~eL~pgG~ 1364 (1555)
+++++||+.+||++|++|++|++. +++ .|+|+|+++ | ..++||+|||+
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~~--------------------------d~~~~l~l~F~~~~~~~g~~~~veL~p~G~ 251 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLEN--------------------------SIDGVLDLTFSADDERFGEVVTVDLKPDGR 251 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTTS--------------------------CCTTTCCCBSEEEEEETTEEEEEESSTTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC--------------------------CHHHHHCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 997999998769999999999848--------------------------987762374388740479634685467876
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCC
Q ss_conf --677461889999999987651179999999830221334322358899889863138987689888743218448779
Q 000409 1365 --NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYT 1442 (1555)
Q Consensus 1365 --~VT~~N~~eYV~~v~~~~L~~gv~~q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt 1442 (1555)
+||.+|+++||+++++|+|+++|+.|++||++||++|+|..+|++|+|+||+.|+||..+ +|+++|+++++| +||+
T Consensus 252 ~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y-~Gy~ 329 (429)
T 3olm_A 252 NIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDY-RGYQ 329 (429)
T ss_dssp GSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEE-ESCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCC-CCCC
T ss_conf 66657046899999999999987699999999997563279999845999999999569988-899999974623-6999
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99868999999981299999986430003888789999766888-----2689723899998888899999999999996
Q 000409 1443 AKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLP 1517 (1555)
Q Consensus 1443 ~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~gGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LP 1517 (1555)
.++++|+|||+||++|+.+||++|||||||++|+|++||++|+| +|+|++.. .+++||
T Consensus 330 ~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~-----------------~~~~LP 392 (429)
T 3olm_A 330 ESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG-----------------EVQQLP 392 (429)
T ss_dssp TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECCS-----------------CTTSCC
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC-----------------CCCCCC
T ss_conf 886299999999986899999999958518998897530004676777218996289-----------------877897
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7745567103789999999999999999809844447
Q 000409 1518 SVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1554 (1555)
Q Consensus 1518 sa~TC~n~LkLP~YsS~evlkeKL~~AI~eg~g~F~L 1554 (1555)
+||||||+|+||+|+|+|+||+||++||+|++| |++
T Consensus 393 ~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~G-Fg~ 428 (429)
T 3olm_A 393 KSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG-FGQ 428 (429)
T ss_dssp EEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC-----
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC-CCC
T ss_conf 220143776897989999999999999972798-787
No 6
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=1.00 E-value=1 Score=670.26 Aligned_cols=357 Identities=30% Similarity=0.441 Sum_probs=312.5
Q ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEE
Q ss_conf 756689878751000079999999840579999973012211543442023570169999999996501--797417999
Q 000409 1089 PFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVE 1166 (1555)
Q Consensus 1089 pfetR~~~f~~tsfg~~R~l~~lq~~~~~~~~~~~~~~~~~~grl~r~kv~V~R~~il~sA~~vl~~~~--~~~~~LeVe 1166 (1555)
+|+.|..+|+. .++... ..++.+++|+|++|++|+++.+.... ..++.|+|+
T Consensus 3 ~f~~k~~~f~~----------~~~~~~----------------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~ 56 (374)
T 1nd7_A 3 GFRWKLAHFRY----------LCQSNA----------------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVI 56 (374)
T ss_dssp THHHHHHHHHH----------HHHHTC----------------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEE
T ss_pred CHHHHHHHHHH----------HHHHCC----------------CCCCEEEEECCCCHHHHHHHHHHHCCHHHCCCEEEEE
T ss_conf 75899999999----------986247----------------9997699987887799999999836987615548999
Q ss_pred ECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 827632377-5058999999999841378973238999999853468888889877888881206898878999999877
Q 000409 1167 YFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADA 1245 (1555)
Q Consensus 1167 F~gE~G~g~-GptrEFy~lvs~El~~~~l~lf~~~~~~~~~~~~~d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~ 1245 (1555)
|.||+|+|. ||+||||+++++|+++|+++||+.++. +.| .++|+|.+..
T Consensus 57 F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~----------------------~~~-----~~~~~p~s~~--- 106 (374)
T 1nd7_A 57 FRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGK----------------------NNY-----CLQINPASTI--- 106 (374)
T ss_dssp ETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSS----------------------SSC-----CEEECGGGGG---
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC----------------------CCC-----EECCCCCCCC---
T ss_conf 8887775788428999999999973976465431588----------------------883-----2204874457---
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHEECCCCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 66887023778997601210110003980256679999999817889935310007999999999999985443210013
Q 000409 1246 SEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMT 1325 (1555)
Q Consensus 1246 ~~~~~~~~~l~~F~fLG~liakAl~d~r~ldl~fs~~f~K~llg~~ltl~DL~~vDp~l~~sL~~L~~~~~~k~~i~~~~ 1325 (1555)
..+++++|+|+|++||+||++++++|++|+++|||+|+|.+++++||+.+||++|++|++|++.
T Consensus 107 -----~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~----------- 170 (374)
T 1nd7_A 107 -----NPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN----------- 170 (374)
T ss_dssp -----STTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSS-----------
T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf -----8779999999899987998659743785879999999389887889999619999865421359-----------
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCC----C-CCCEECCCCCC--CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC
Q ss_conf 676110111333588534453201149----9-97210389997--6774618899999999876511799999998302
Q 000409 1326 SDNCEEVVDLRFRGAPIEDLCLDFTLP----G-YPDYILKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGF 1398 (1555)
Q Consensus 1326 ~~~~~~~~~l~~~~~~iedL~L~Ftlp----g-~~~~eL~pgG~--~VT~~N~~eYV~~v~~~~L~~gv~~q~~Afr~GF 1398 (1555)
+..++ +|+|+|++. | ..++||+|||+ +||.+|+++||+++++|+|+.+|+.|++||++||
T Consensus 171 ------------~~~~~-~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf 237 (374)
T 1nd7_A 171 ------------NIEEC-GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237 (374)
T ss_dssp ------------CSCSS-CCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred ------------CHHHH-HCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ------------85253-11015887511478500474478996745231109999999999997020999999999864
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 21334322358899889863138987689888743218448779998689999999812999999864300038887899
Q 000409 1399 NQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP 1478 (1555)
Q Consensus 1399 ~~V~p~~~L~~Fsp~EL~~licG~~~~w~~e~L~~~~~~~~Gyt~~s~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~ 1478 (1555)
++|+|..+|++|+|+||+.|+||..+ +|+++|+++++|+| |+.++++|+|||+||++|+.+||++||||+||++|+|+
T Consensus 238 ~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~ 315 (374)
T 1nd7_A 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPL 315 (374)
T ss_dssp HHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCT
T ss_pred HHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHEEECC-CCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 65089899846999999998569987-88898751069748-99898402549999986599999999999848998898
Q ss_pred CCCCCCC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9976688-----8268972389999888889999999999999677455671037899999999999999998098
Q 000409 1479 GGLAVLN-----PKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1549 (1555)
Q Consensus 1479 gGf~~L~-----p~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evlkeKL~~AI~eg~ 1549 (1555)
+||++|. ++|+|.+.. ++++||+||||||+|+||+|+|+|+||+||++||+|++
T Consensus 316 ~Gf~~L~~~~gp~~f~I~~~~-----------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 316 GGFAELMGSNGPQKFCIEKVG-----------------KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp TCGGGCEETTEECCEEEECCS-----------------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred CCHHHCCCCCCCCCEEEEECC-----------------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 433221566788765997589-----------------89869778716598779898999999999999997149
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=1.00 E-value=1 Score=254.97 Aligned_cols=109 Identities=27% Similarity=0.454 Sum_probs=101.1
Q ss_pred CCCHHHHHHHCEECCCCCCCC----HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC--CCCCCCCCCEEEEECCCCCC
Q ss_conf 689888743218448779998----689999999812999999864300038887899--99766888268972389999
Q 000409 1425 LWEPAALAEHIKFDHGYTAKS----PAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPP--GGLAVLNPKLTIVRKHSSTA 1498 (1555)
Q Consensus 1425 ~w~~e~L~~~~~~~~Gyt~~s----~~i~~fwevl~~~s~eerr~FLqFvTGs~rLP~--gGf~~L~p~ltVv~k~~~~~ 1498 (1555)
..|+++|+++|+|+++|+.++ +.|+|||+||++|+.+||++||||+||++|+|+ +||+.| |+|+|.. +
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~----~- 76 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRP----P- 76 (118)
T ss_dssp ---------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEES----C-
T ss_pred CCCHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCEEEEC----C-
T ss_conf 038999983327718867775320569999999999799999999882743899888765675569-8479978----9-
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88888999999999999967745567103789999999999999999809844447
Q 000409 1499 PNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDL 1554 (1555)
Q Consensus 1499 ~~~~~~~~g~~~~~d~~LPsa~TC~n~LkLP~YsS~evlkeKL~~AI~eg~g~F~L 1554 (1555)
++++||+||||||+|+||+|+|+|+|++||++||++ +| |+|
T Consensus 77 -------------~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~g-fGf 117 (118)
T 3pt3_A 77 -------------DDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KN-FGF 117 (118)
T ss_dssp -------------CTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC--------
T ss_pred -------------CCCCCCCCEEHHCEEECCCCCCHHHHHHHHHHHHHH-CC-CCC
T ss_conf -------------988793200021263797989999999999999984-79-478
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=1.00 E-value=1 Score=122.83 Aligned_cols=268 Identities=12% Similarity=0.123 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99878999852127873589899999999996614991458988523279999998213689999765581038989999
Q 000409 13 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 13 V~e~~P~L~nvL~~~D~~vvE~a~~ci~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~n~~~~~~~ls~~t~~~~Lr~ 92 (1555)
+...+|.|.+-+++.|....-.|+.++-++...- +...++.++..|+|+.++++|...+ .+........+
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~--~~~~i~~ii~~G~ip~Lv~lL~~~~--------~~~~q~~Aa~a 143 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSRE--KQPPIDNIIRAGLIPKFVSFLGKTD--------CSPIQFESAWA 143 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSS--SCCCHHHHHHTTHHHHHHHHHTCTT--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--CCCHHHHHHHCCCHHHHHHHHCCCC--------CHHHHHHHHHH
T ss_conf 8889999999856999999999999999987278--9844999998889999999876899--------89999999999
Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CC
Q ss_conf 99983189999999996091358999840999998998886668994669999999984189999997667877632-12
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNM-FV 171 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~-~~ 171 (1555)
|+++|++++..++.+++.|+.+.|..+|..... +....++..++.|----|. .... ..
T Consensus 144 L~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------------~v~e~A~~aL~nLa~~~~~-------~r~~i~~ 202 (529)
T 3tpo_A 144 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------------HISEQAVWALGNIAGAGSA-------FRDLVIK 202 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------------HHHHHHHHHHHHHHTTCHH-------HHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCH--------------HHHHHHHHHHHHHHCCCHH-------HHHHHHH
T ss_conf 999974999999999988889999998769998--------------9999999999987446889-------9999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 5875447999989987888888--63025677541029-59999999768999999971478867999999999987028
Q 000409 172 KGPVVRKSPASSSGKQDDTNGN--ASEVSAREKLLSDQ-PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYF 248 (1555)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~R~~ll~~~-pe~~~~f~~~LlPvLievy~ssv~~~VR~k~L~ailKiv~~ 248 (1555)
.|.+..--.-............ ......-..+.... +..-...+..++|.|+....+. +..|+..+++++..+...
T Consensus 203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDG 281 (529)
T ss_dssp TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 3872789998732440376899999999999998741321136999864899999995599-688999999999986520
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 9999999965106547999998715797239889999999997382469988998319999999762
Q 000409 249 SSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLIL 315 (1555)
Q Consensus 249 ~~~~~L~~ilk~~~isS~LAsiLss~D~~lvv~ALqi~elLl~Klpdif~~~F~REGVi~eI~~La~ 315 (1555)
..+....+.....+ ..|..+|.+.+..+...|+.++-.|... .+.....+...|++..+-.|..
T Consensus 282 -~~~~~~~v~~~g~i-~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~ 345 (529)
T 3tpo_A 282 -PNERIEMVVKKGVV-PQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLT 345 (529)
T ss_dssp -CHHHHHHHHTTTCH-HHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTT
T ss_pred -HHHHHHHHHHCCCH-HHHHHHHCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHC
T ss_conf -00567899963602-8899886189704778899999999716-4687788760242789999980
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=1.00 E-value=1 Score=122.16 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 97689999999714788679999999999870289999999965106547999998715797239889999999997382
Q 000409 215 GMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLP 294 (1555)
Q Consensus 215 ~~~LlPvLievy~ssv~~~VR~k~L~ailKiv~~~~~~~L~~ilk~~~isS~LAsiLss~D~~lvv~ALqi~elLl~Klp 294 (1555)
+..++|.|+....+. +..|+..+++++..+... +.+....+.....+ ..|..+|.+.+..+...|+.++-.|....
T Consensus 230 ~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i-~~Lv~lL~~~~~~v~~~al~aL~nl~~~~- 305 (510)
T 3ul1_B 230 VEQILPTLVRLLHHN-DPEVLADSCWAISYLTDG-PNERIEMVVKKGVV-PQLVKLLGATELPIVTPALRAIGNIVTGT- 305 (510)
T ss_dssp HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCH-HHHHHHHTCSCHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-HHHHHHHHHHCCCC-HHHHHHHCCCCHHHHHHHHHHHHHHHCCC-
T ss_conf 976999999998168-799999999999998602-15667899863651-25556613887134268899998862377-
Q ss_pred HHHHHHHHHHCHHHH
Q ss_conf 469988998319999
Q 000409 295 GTFSKMFVREGVVHA 309 (1555)
Q Consensus 295 dif~~~F~REGVi~e 309 (1555)
+.....+...|++..
T Consensus 306 ~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 306 DEQTQKVIDAGALAV 320 (510)
T ss_dssp HHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHCCCHHH
T ss_conf 888888761241278
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=113.64 Aligned_cols=265 Identities=14% Similarity=0.174 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99878999852127873589899999999996614991458988523279999998213689999765581038989999
Q 000409 13 VMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAATLISTSNSGGGQASLSTPTYTGLIRL 92 (1555)
Q Consensus 13 V~e~~P~L~nvL~~~D~~vvE~a~~ci~rIvdsf~~~~~~Le~L~~~~Ll~~l~~LL~~~n~~~~~~~ls~~t~~~~Lr~ 92 (1555)
..+.+|.|...|++.|..+...|++++.++..... ....+.++..|+++.++++|...+ ++......+..
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~--~~~~~~~~~~g~v~~Lv~lL~~~~--------~~~v~~~A~~~ 141 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVQFLTRED--------FPQLQFEAAWA 141 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSS--SCCHHHHHHTTCHHHHHHHHTCTT--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHCCCHHHHHHHHCCCC--------CHHHHHHHHHH
T ss_conf 67789999998769999999999999999814777--962999998887999999847899--------78999999999
Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99983189999999996091358999840999998998886668994669999999984189999997667877632125
Q 000409 93 LSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVK 172 (1555)
Q Consensus 93 Ls~la~~Sp~ls~~Ll~~~i~~tL~~iLtg~~~~~~~~~~~~~~rp~eql~evl~LI~eLLP~lP~~~~~~~~~~~~~~~ 172 (1555)
|+.+|.+++.....+++.++.+.|..+|.... .+....++..++.|--..|. . .......
T Consensus 142 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------------~~v~~~a~~aL~~l~~~~~~--~----~~~i~~~ 201 (528)
T 4b8j_A 142 LTNIASGTSENTKVVIDHGAVPIFVKLLGSSS--------------DDVREQAVWALGNVAGDSPK--C----RDLVLAN 201 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------------HHHHHHHHHHHHHHHHTCHH--H----HHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC--------------HHHHHHHHHHHHHHHCCCHH--H----HHHHHHC
T ss_conf 99996799887999996886789998856999--------------99999999999999589916--6----8999977
Q ss_pred CCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 875---44799998998788888863025677541029599999997689999999714788679999999999870289
Q 000409 173 GPV---VRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFS 249 (1555)
Q Consensus 173 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~~ll~~~pe~~~~f~~~LlPvLievy~ssv~~~VR~k~L~ailKiv~~~ 249 (1555)
|.+ ...-. ...... . .......-..+....|.........++|.|++...+. +..|+..+++++.++...
T Consensus 202 g~l~~Ll~lL~--~~~~~~-v--~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~- 274 (528)
T 4b8j_A 202 GALLPLLAQLN--EHTKLS-M--LRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDG- 274 (528)
T ss_dssp TCHHHHHHTCC--TTCCHH-H--HHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSS-
T ss_pred CCHHHHHHHHH--CCCCHH-H--HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCC-
T ss_conf 85999999973--489889-9--9999999999975899986999998999999997799-878999999999998738-
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHC
Q ss_conf 9999999651065479999987157972398899999999973824699889983199999997622
Q 000409 250 SAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA 316 (1555)
Q Consensus 250 ~~~~L~~ilk~~~isS~LAsiLss~D~~lvv~ALqi~elLl~Klpdif~~~F~REGVi~eI~~La~~ 316 (1555)
.++....+.+...+ ..|..+|.+.+..+...|+.++-.|....++ ....+...|++..+-.+...
T Consensus 275 ~~~~~~~~~~~g~v-~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~ 339 (528)
T 4b8j_A 275 TNDKIQAVIEAGVC-PRLVELLLHPSPSVLIPALRTVGNIVTGDDA-QTQCIIDHQALPCLLSLLTQ 339 (528)
T ss_dssp CHHHHHHHHHTTCH-HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHCCHH-HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHCC
T ss_conf 87999999974879-9999997188755779999999999729889-99999974027899999758
Done!