BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000413
(1545 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 147/593 (24%), Positives = 257/593 (43%), Gaps = 147/593 (24%)
Query: 968 PKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEF 1027
P + ++YK IL + A AS+ V + + + + +F+P++ E
Sbjct: 1057 PDVQEFYKVILGWNPLADSFSASN------VEMQCVQAKFTYNDSNAYEKVFKPMLFHEC 1110
Query: 1028 KAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHLVRFVHDDNDSVTSKIFSENDLVL 1085
AQ+ S+ E+ Y + ++ R VD+F + F V+ S+ D+ L
Sbjct: 1111 WAQVKSAV------EEKQYPPIDLILNTRSTVDNFVDIYFTSCSPTEVS--FLSDTDICL 1162
Query: 1086 LTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1145
L++ ++ + + + S L +R ++ S+ L + N+ ++
Sbjct: 1163 LSKSQSSGDTNNPKSFQLCKIQSISRKKESLELCLRMNIE--SIDLQEYAPNI----RFT 1216
Query: 1146 ATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR---GYNESRELDLGKLSQLQQIL 1202
A + + T LREF AL SL+ +PL IL+ NV+R + + ++ Q+I+
Sbjct: 1217 AQKLFNATTSLREFAALKSLRHLPLSQRILD-ANVTRLPSNFTDDKK---------QKIM 1266
Query: 1203 KT-SFNESQLQAI---SVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS 1258
K+ NE Q AI SV G + LIQGPPGTGKT+TI+ ++ A+L TS
Sbjct: 1267 KSYGVNEPQAYAIYASSVNDGFT----------LIQGPPGTGKTKTILGMIGAVL---TS 1313
Query: 1259 PKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLIC 1318
L+ N GQ+ +K+S++ ++LIC
Sbjct: 1314 SSQGLQFNVP---------GQT-----------------------RKTSKN----KILIC 1337
Query: 1319 AQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEE 1378
A SNAA+DE++ RI K G+Y +G + P ++RVG F D++ H
Sbjct: 1338 APSNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVG------------FGDSISVH----- 1379
Query: 1379 RMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDV 1438
+ TL E+++ ++ K+ + +SD + D + K D +
Sbjct: 1380 ------------AKEFTLE---EQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSL 1424
Query: 1439 KLSDVE-----------LEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKS 1487
+ D+E LEA+LR++ +QK + + L + +++ + LK +++
Sbjct: 1425 R-EDLEKFRSTGKNSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQ 1483
Query: 1488 ILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1540
+L+EA+IV TLS G +L + F V+IDEAAQ V
Sbjct: 1484 LLQEADIVCATLSASGHELL--------------LNAGLTFRTVIIDEAAQAV 1522
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 151/594 (25%), Positives = 246/594 (41%), Gaps = 137/594 (23%)
Query: 970 LDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKA 1029
++ Y+ IL+ DY +S ++ +V F SP + + +PL+L E
Sbjct: 1113 MNPLYEIILQWDY-----TRNSEYPDDEPIGNYSDVKDFFNSPADYQKVMKPLLLLESWQ 1167
Query: 1030 QLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLT-- 1087
L SS ED S+ V + V DF+ V + + SE+DL+++
Sbjct: 1168 GLCSS----RDREDYKPFSIIVGNRTAVSDFYDV-YASVAKQVIQDCGISESDLIVMAYL 1222
Query: 1088 -------RVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLE 1140
R+S H R ++ + + +R + R + + L
Sbjct: 1223 PDFRPDKRLSSDDFKKAQHTCLAKVRTLKNTKGGNVDVTLRIH------RNHSFSKFLTL 1276
Query: 1141 RSKWHATLIMSITPQLREFHALSSLKSIPLLPIILN-----PVNVSRGYNESRELDLGKL 1195
RS+ + +M +T RE+ L L+ L+ IL PVNV D ++
Sbjct: 1277 RSEIYCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKPSPPVNV----------DAAEI 1326
Query: 1196 SQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLAT 1255
+++ K N SQ +AI ++ SLIQGPPGTGKT+TI+ I+ L+T
Sbjct: 1327 ETVKKSYK--LNTSQAEAIVNSVSKEG-------FSLIQGPPGTGKTKTILGIIGYFLST 1377
Query: 1256 RTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRA-R 1314
+ + S++ I E++ ++E ++ +
Sbjct: 1378 KNASSSNV--------------------------------IKVPLEKNSSNTEQLLKKQK 1405
Query: 1315 VLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHR 1374
+LICA SNAAVDE+ R+ K G+Y G +KP LVRVG V+ ++ LVD R
Sbjct: 1406 ILICAPSNAAVDEICLRL-KSGVYDKQGHQFKPQLVRVGRSDVVNVAIKDLTLEELVDKR 1464
Query: 1375 LAEERMHL-TDPK-----NEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNML 1428
+ E + TDP+ N T+ LR L+ ++ GN P++ +
Sbjct: 1465 IGERNYEIRTDPELERKFNNAVTKRRELRGKLD---------------SESGN--PESPM 1507
Query: 1429 DDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELG--VAQVQEKKS--YEETKALKHKL 1484
E D+ +L+ K+R+L +I ELG +++EK S Y +
Sbjct: 1508 STE-----DIS----KLQLKIREL----SKIINELGRDRDEMREKNSVNYRNRDLDRRNA 1554
Query: 1485 RKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQ 1538
+ IL ++I+ +TLSG D+ G K FD V+IDEA Q
Sbjct: 1555 QAHILAVSDIICSTLSGSAHDVLATM-----GIK---------FDTVIIDEACQ 1594
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 146/599 (24%), Positives = 254/599 (42%), Gaps = 115/599 (19%)
Query: 948 PFENRCGLHRMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSREDENRV---HCKLKE 1004
P + R +R VK P + D+YK IL + + + N V H +
Sbjct: 895 PSQIRMMTNRNVANVKARLFPSMTDFYKEILSWE--------PANQSPNPVLKFHKLDGK 946
Query: 1005 VPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHL 1062
+ F++ E ++ + +P++ E +Q+ S+ L D+ + + + VER V++F
Sbjct: 947 IIDSFKTVEHYMEVLQPMIFMECWSQIQSTKL------DLKFSPVEGIMVERTAVNNFVD 1000
Query: 1063 VRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRF 1122
+ D ++ + L + + KVER R N +L++
Sbjct: 1001 IGVSVAPKDLYGYPLYDTEVVSLAFNKEDASSMKGLCCFAKVERIVRQTN---GVLVVLR 1057
Query: 1123 YLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR 1182
L + + LN+ + N + W L ++ R++ + L L I+ S+
Sbjct: 1058 TLPSMEI-LNKLQGNC---ALWFLKL-TNLATFTRQYAGIRGLPYFHLADDIIRARPCSQ 1112
Query: 1183 GYNESRELDLGKLSQLQQILK-TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGK 1241
S S+++ +K NE Q +AI A+ + +LIQGPPGTGK
Sbjct: 1113 PVKHSS-------SEIKAAMKRYQVNEPQAKAIMCALD-------NNGFTLIQGPPGTGK 1158
Query: 1242 TRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSE 1301
T+TI+ I+SALL + + H+ +RP N+ S
Sbjct: 1159 TKTIIGIISALLVDLS--RYHI---------TRP---------------------NQQS- 1185
Query: 1302 RDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPN 1361
KS+ES + ++L+CA SNAAVDE++ R+ K G +G+ Y P +VR+GN +T++ +
Sbjct: 1186 ---KSTES--KQQILLCAPSNAAVDEVLLRL-KRGFLLENGEKYIPRVVRIGNPETINVS 1239
Query: 1362 SLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGN 1421
++ + +L E D + + R + +I E + +D
Sbjct: 1240 VRDLSLEYQTEKQLLEVNQGAIDLGS--LQELTRWRDTFYDCIQKIEELEKQIDVARDVA 1297
Query: 1422 SDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALK 1481
D K++ + +K ++ L++ ++E EL Q Q +E L+
Sbjct: 1298 EDTKSLGKELQNKINEKNLAEQKVE---------------EL---QSQSFTKNKEVDLLR 1339
Query: 1482 HKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1540
K +K+ILK+A++V TLSG G DL S + F V+IDEAAQ V
Sbjct: 1340 KKAQKAILKQADVVCATLSGSGHDLVAHSSLN--------------FSTVIIDEAAQAV 1384
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 206/466 (44%), Gaps = 84/466 (18%)
Query: 973 WYKPILEIDYFATVGLASSREDENRVHCK--LKEVPVCFQSPEQFVSIFRPLVLEEFKAQ 1030
+Y IL DY L E +NR K L V ++ + + F PL+ EE KAQ
Sbjct: 19 FYNIILGWDYKQ---LTKENERKNRKDSKEKLNVVKNTYKDVDDYFETFEPLLFEEVKAQ 75
Query: 1031 LHSSFLEMSSWEDMYYGSLS-VLSVERVDDFH--LVRFVHDDNDSVTSKIFSENDLVLLT 1087
+ L+ E+ + V+ + FH LV + H++++ ++NDL+LL+
Sbjct: 76 I----LQNKDGEEASVCKMRLVMECNEGEGFHFLLVTYEHEEDE-----YLAQNDLLLLS 126
Query: 1088 R--VSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1145
+ V P + VE +R++++L +R YL V++ + ++ +S
Sbjct: 127 KEEVKGNSFPSS-YGFAVVE------HRQNNLLRLRMYLAEDIVQITKNTKSSRTKSFIQ 179
Query: 1146 A-----TLIMS----------------ITPQLREFHALSSLKSIPLLPIILNPVNVSRGY 1184
A +LI S ++ +RE+ AL S+ S+P +I S G+
Sbjct: 180 ALSNMRSLITSSASPIDKRVFSLKLCGLSTIIREYIALRSVSSLPFKDLIFTAAEKSCGF 239
Query: 1185 NESRELDLGKLSQ-LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTR 1243
+ + K+S L + + N+SQ +AI V + S LIQGPPGTGKT+
Sbjct: 240 GD----EAWKISGPLNEFFNENLNKSQKEAIDVGLSRKS-------FVLIQGPPGTGKTQ 288
Query: 1244 TIVAIVSALL-ATRTSPKSH-------------LKQNYSSCINSRPKI----GQSAAIAR 1285
TI++I+ A++ AT +S +++ Y+ + P I + A +
Sbjct: 289 TILSILGAIMHATPARVQSKGTDHEVKRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPE 348
Query: 1286 AWQDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTY 1345
D NE +S R RVL+CA SN+A+DE+V R+ GL + +TY
Sbjct: 349 DGDDGFFPTSGNELKPEVVNASRK-YRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTY 407
Query: 1346 KPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCT 1391
P +VR+G +K H +DH +A++R D + T
Sbjct: 408 TPKIVRIG-LKAHHS-----VASVSLDHLVAQKRGSAIDKPKQGTT 447
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 140/563 (24%), Positives = 227/563 (40%), Gaps = 126/563 (22%)
Query: 1003 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 1062
+ VPV FQ ++ ++F PL++ + +L + E+ Y L + +
Sbjct: 1712 RPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWLSSPNKENFYQLQLRKFPADYKKYWEF 1771
Query: 1063 VRFVHDDNDSVTSKIF--SENDLVLLTRVSPQKTPHDVH--------MVGKVERRERDNN 1112
+ ++ N+S +K ENDLV L +P+K+ D H G V + R +
Sbjct: 1772 LIYL---NESELAKQLHPKENDLVFL---APEKSYMDRHGMQDCSHYYCGYVHKFRRTSV 1825
Query: 1113 RRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLP 1172
RS +Q L + +NL +I S+ R+ A+S L S L
Sbjct: 1826 MRSGKAECSLCIQTQDT-LPASVKNLT-----RCIVISSLVTTQRKLKAMSLLSSRNQLA 1879
Query: 1173 -IILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELS 1231
+LNP + +++L ++ LK FNE Q +AI A + ++
Sbjct: 1880 RAVLNPNPMDFC---TKDLLTTTSERIVAYLK-DFNEDQKKAIETAYAMVKHSPSVAKIC 1935
Query: 1232 LIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAA 1291
LI GPPGTGK++TIV ++ LL T K H +N+++ KI Q+
Sbjct: 1936 LIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDENFNA------KIKQN----------- 1977
Query: 1292 LARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRI---------SKEGLYGSDG 1342
RVL+CA SNAAVDEL+ +I K+ G+ G
Sbjct: 1978 ----------------------RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCG 2015
Query: 1343 KTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEK 1402
LVR+G K+++ L F +D+ V+HR+ ++ L E R L + L++
Sbjct: 2016 DI---NLVRLGPEKSINTEVLKFSLDSQVNHRMKKD---LPSHIQEMLRRKEILDAQLDE 2069
Query: 1403 LVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRE 1462
L +RA + G + LD+ + V EL +K++
Sbjct: 2070 L-------SRQRALCRGGREMQRQELDEHIAI---VSKERQELASKIK------------ 2107
Query: 1463 LGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNP 1522
E + + + +I+ E+ ++ TLS GG L ES + G P
Sbjct: 2108 -------------EVQGRPQRAQNTIILESHVICCTLSTSGGLLL----ESAFRGQGGVP 2150
Query: 1523 SENTLFDAVVIDEAAQVVLVHEL 1545
F V++DEA Q V L
Sbjct: 2151 -----FSCVIVDEAGQSCEVETL 2168
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 61/303 (20%)
Query: 1089 VSPQKTP-----HDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARR-NLLERS 1142
+ P KTP +H++G VE + + ++FY++ ++ ++AR+ +LL R
Sbjct: 223 IPPSKTPITEQNRTLHLIGTVEHLDNGG------IKVKFYVK--GIKGDRARQVSLLLRY 274
Query: 1143 K--WHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSRGYNESRELDLGKLSQLQQ 1200
+ W T + +++ REF AL + ++ R + + + L
Sbjct: 275 EIDWWTTKLCNLSTLQREFAALYQCSQSNFMKTLM-----MRDDDGEDGIVMKIPPLLHD 329
Query: 1201 ILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK 1260
+++N+SQL A++ A+ + ++LIQGPPGTGKT I+ ++S LL + PK
Sbjct: 330 QFSSTYNDSQLNALTSAL-------EGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPK 382
Query: 1261 ---------SHLKQNYSSCINSRPKIGQSAAIARAWQDAALAR------QINED-SERDK 1304
HL ++ + + + I++ W + I+ D ERD+
Sbjct: 383 VKSGGNNLGDHLLKDRELSMAEKRDLWN---ISQPWFNKEFPHIRDNYELIDYDFEERDQ 439
Query: 1305 KSSE--------------SSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLV 1350
K S + R+L+CA SN AVDE+VSR+ ++GL +DG+ Y P LV
Sbjct: 440 KRKRDLWRKLRDTGSVKGGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLV 499
Query: 1351 RVG 1353
RVG
Sbjct: 500 RVG 502
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 970 LDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKA 1029
+D +YK IL D S +E E LK V V F + E +++ + PL+ EE +A
Sbjct: 41 IDRFYKHILTWD----ASDLSPKEKE------LKPVKVSFNNEEDYITTYEPLLFEECRA 90
Query: 1030 QLHSSFLEMSSWEDMYYGSLS-VLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTR 1088
QL S +E +D +LS V + V+DF +V V +N ++ F +NDL++++
Sbjct: 91 QLERS-IEEGEKDDTSEPTLSRVRYISEVNDFLVVGLVMAENVNIFQ--FHDNDLIMISL 147
Query: 1089 VSP 1091
P
Sbjct: 148 HHP 150
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 134/567 (23%), Positives = 221/567 (38%), Gaps = 129/567 (22%)
Query: 1003 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 1062
+ VPV F + + ++F PL++ + +L + E+ Y + + + +
Sbjct: 1731 RPVPVRFHNYGDYFNVFFPLMVLNTFETVAQEWLNSPNRENFYQLQVRKFPADYIKYWEF 1790
Query: 1063 VRFVHDDNDSVTSKIF-SENDLVLLT--RVSPQKTP---------HDVH--MVGKVERRE 1108
++ + + +++ ENDLV L R++ +K H+ H V K R
Sbjct: 1791 AVYLEEC--ELAKQLYPKENDLVFLAPERINEEKKDTERNDIQDLHEYHSGYVHKFRRTS 1848
Query: 1109 RDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSI 1168
N ++ L +N LN+ + +I S+ R+ A+S L S
Sbjct: 1849 VMRNGKTECYLSIQTQENFPANLNEL---------VNCIVISSLVTTQRKLKAMSLLGSR 1899
Query: 1169 PLLP-IILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKD 1227
L +LNP + +++L ++ L+ FNE Q +AI A +
Sbjct: 1900 NQLARAVLNPNPMDFC---TKDLLTTTSERIIAYLR-DFNEDQKKAIETAYAMVKHSPSV 1955
Query: 1228 CELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAW 1287
++ LI GPPGTGK++TIV ++ LL T K H +N S KI Q+
Sbjct: 1956 AKICLIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDEN------SNAKIKQN------- 2001
Query: 1288 QDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRI---------SKEGLY 1338
RVL+CA SNAAVDEL+ +I K+
Sbjct: 2002 --------------------------RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPL 2035
Query: 1339 GSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRS 1398
G+ G LVR+G K+++ L F +D+ V+HR+ K E + +
Sbjct: 2036 GNCGDI---NLVRLGPEKSINSEVLKFSLDSQVNHRM----------KKELPSHVQAMHK 2082
Query: 1399 NLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQ 1458
E L ++ +RA + G + LD+ + K V EL +K++
Sbjct: 2083 RKEFLDYQLDELSRQRALCRGGREIQRQELDENISK---VSKERQELASKIK-------- 2131
Query: 1459 IYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFK 1518
E + K + I+ E+ I+ TLS GG L ES +
Sbjct: 2132 -----------------EVQGRPQKTQSIIILESHIICCTLSTSGGLLL----ESAFRGQ 2170
Query: 1519 FGNPSENTLFDAVVIDEAAQVVLVHEL 1545
G P F V++DEA Q + L
Sbjct: 2171 GGVP-----FSCVIVDEAGQSCEIETL 2192
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 1027 FKAQLHSSFLEMSSWED---MYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKI----FS 1079
+K Q + L++ W++ + YGSL +S + + F + +++ + I F+
Sbjct: 421 YKVQFDTKPLKLVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREHEDLCQGIVQLCFN 480
Query: 1080 ENDLVLLTRVSPQKTPHDVH-----------MVGKVERRERDNNRRSSILLIRFYLQNGS 1128
E LL V P + V + G E +E D + +I+ Y++N
Sbjct: 481 EQSQQLLADVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVQCDSYVRNP- 539
Query: 1129 VRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNP-VNVSRGYNES 1187
R LL ++ T +M +R KS+ + +P +NV
Sbjct: 540 -------RYLLMGGRYDFTPLMENPSAMR--------KSLRGAEALRHPRINV------- 577
Query: 1188 RELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVA 1247
D G+ + + ++SQ++A+ A+ EL++IQGPPGTGKT +
Sbjct: 578 --FDFGQWPSKEAL---KLDDSQMEALQFALTK--------ELAIIQGPPGTGKTYVGLK 624
Query: 1248 IVSALLATRT 1257
IV ALL ++
Sbjct: 625 IVQALLTNKS 634
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=hcs1 PE=3 SV=1
Length = 660
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 1206 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1253
N SQ +A+ +I + ELSLI GPPGTGKT T+V I+ L+
Sbjct: 210 LNASQKKAVKFSIAVK-------ELSLIHGPPGTGKTHTLVEIIQQLV 250
Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 86/227 (37%)
Query: 1314 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDH 1373
R+L+C SN AVD +V R+S G+ P +VR+G HP L + +++DH
Sbjct: 255 RILVCGASNLAVDNIVDRLSSSGI---------P-MVRLG-----HPARL---LPSILDH 296
Query: 1374 RLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVH 1433
L + +R+ + + + I +K TK+G
Sbjct: 297 SL------------DVLSRTGDNGDVIRGISEDIDVCLSKITKTKNG------------- 331
Query: 1434 KGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAE 1493
++++IY+ + + +K Y + +A K +I+ ++
Sbjct: 332 --------------------RERREIYKNIR----ELRKDYRKYEA---KTVANIVSASK 364
Query: 1494 IVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1540
+V TL G G S + G + FDAV+IDEA+Q +
Sbjct: 365 VVFCTLHGAG-------SRQLKGQR---------FDAVIIDEASQAL 395
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1
Length = 683
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 1198 LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1253
++ L + N+SQ AI+ AI + +L++I GPPGTGKT T++ ++ LL
Sbjct: 200 IKSFLNPNLNDSQKTAINFAI--------NNDLTIIHGPPGTGKTFTLIELIQQLL 247
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 40.8 bits (94), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 49/108 (45%)
Query: 1230 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1289
LSLIQGPPGTGKT T ++V L ++
Sbjct: 409 LSLIQGPPGTGKTVTSASVVYHLATMQS-------------------------------- 436
Query: 1290 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1337
R +KS + VL+CA SN AVD+L +I + GL
Sbjct: 437 ------------RKRKS-----HSPVLVCAPSNVAVDQLAEKIHRTGL 467
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 1206 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRT 1257
++SQ++A+ A+ EL++IQGPPGTGKT + IV ALL +
Sbjct: 598 LDDSQMEALQFALTR--------ELAIIQGPPGTGKTYVGLKIVQALLTNES 641
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 24/117 (20%)
Query: 1204 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV-----SALLATRTS 1258
T+ + SQ +A+S A+ EL++I GPPGTGKT T+V I+ L +
Sbjct: 189 TTLDLSQKEAVSFALAQK-------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 1259 PKS----HLKQNYSSCINSRPKIGQSAAIARAWQ----DAALAR----QINEDSERD 1303
P + +L + + C ++G A + + Q DA LAR QI D RD
Sbjct: 242 PSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRD 298
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1
Length = 988
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 1204 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK--- 1260
T+ + SQ +A+S A+ E+++I GPPGTGKT T+V I+ L A + K
Sbjct: 189 TTLDPSQKEAVSFALAQK-------EVAIIHGPPGTGKTTTVVEII--LQAVKQGLKVLC 239
Query: 1261 --------SHLKQNYSSCINSRPKIGQSAAIARAWQ----DAALAR----QINEDSERD 1303
+L + + C ++G A + + Q DA LAR QI D RD
Sbjct: 240 CAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRD 298
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 1205 SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1249
+ NESQ A+ A+ LS +L LI GPPGTGKTRTI ++
Sbjct: 184 NLNESQKLAVKKAV-LSR------DLYLIHGPPGTGKTRTITEVI 221
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 1204 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1249
T+ + SQ +A+S A+ E+++I GPPGTGKT T+V I+
Sbjct: 189 TALDPSQKEAVSFALAQK-------EVAIIHGPPGTGKTTTVVEII 227
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 55/108 (50%)
Query: 1230 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1289
+SLIQGPPGTGKT T AIV + K GQ
Sbjct: 505 ISLIQGPPGTGKTVTSAAIVYHMA----------------------KQGQG--------- 533
Query: 1290 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1337
+VL+CA SN AVD+L +IS GL
Sbjct: 534 ------------------------QVLVCAPSNVAVDQLAEKISATGL 557
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1230 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1289
LSLIQGPPGTGKT T IV
Sbjct: 469 LSLIQGPPGTGKTVTSATIV---------------------------------------- 488
Query: 1290 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1337
L+RQ N VL+CA SN AVD+L +I K GL
Sbjct: 489 YHLSRQGN---------------GPVLVCAPSNIAVDQLTEKIDKTGL 521
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2
Length = 1124
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1230 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1289
LSLIQGPPGTGKT T IV
Sbjct: 493 LSLIQGPPGTGKTVTSATIV---------------------------------------- 512
Query: 1290 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1337
LARQ N VL+CA SN AVD+L +I + GL
Sbjct: 513 YHLARQGN---------------GPVLVCAPSNIAVDQLTEKIHQTGL 545
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2
Length = 1129
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1230 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1289
LSLIQGPPGTGKT T IV
Sbjct: 498 LSLIQGPPGTGKTVTSATIV---------------------------------------- 517
Query: 1290 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1337
LARQ N VL+CA SN AVD+L +I + GL
Sbjct: 518 YHLARQGN---------------GPVLVCAPSNIAVDQLTEKIHQTGL 550
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
Length = 1002
Score = 37.7 bits (86), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 1158 EFHALSSLKSIPLLPIILNPVNVSRGY---NESRELD----LGKLSQLQQILKT------ 1204
EFH + S+ + N +N R Y + + LD L ++++KT
Sbjct: 334 EFHQRHTAGSVYNVRFTYNRINTRRLYQAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVPI 393
Query: 1205 --SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK 1260
+ N Q+ +I + +G K +I GPPGTGKT T+V + L T+ + +
Sbjct: 394 SPALNAEQICSIEMVLGC-----KGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNAR 446
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 1204 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1249
T + SQ +A+ A+ S K EL++I GPPGTGKT T+V I+
Sbjct: 190 TCLDTSQKEAVLFAL----SQK---ELAIIHGPPGTGKTTTVVEII 228
>sp|Q04YY5|RUVB_LEPBL Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550) GN=ruvB
PE=3 SV=1
Length = 341
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1211 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1270
L ++V + + + K+ + LI GPPG GKT T+ IVS L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIVSNELGTRLT------------ 80
Query: 1271 INSRPKIGQSAAIAR 1285
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|Q04UI9|RUVB_LEPBJ Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=ruvB PE=3 SV=1
Length = 341
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1211 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1270
L ++V + + + K+ + LI GPPG GKT T+ IVS L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIVSNELGTRLT------------ 80
Query: 1271 INSRPKIGQSAAIAR 1285
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus
GN=Lrp2 PE=1 SV=1
Length = 4660
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 851 DGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELV-C 909
DGK NS N L F NR +RN ++ +S+ + Q NVVA +++ + L
Sbjct: 3189 DGKSCRQNS--NIEPYLVFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEERLYWI 3246
Query: 910 DVENDPLESSFKSGKHQQTYLT 931
D E +E F + +Q+T ++
Sbjct: 3247 DAEKQIIERMFLNKTNQETIIS 3268
>sp|Q8F7Y2|RUVB_LEPIN Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=ruvB PE=3 SV=1
Length = 341
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1211 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1270
L ++V + + + K+ + LI GPPG GKT T+ I+S L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIISNELGTRLT------------ 80
Query: 1271 INSRPKIGQSAAIAR 1285
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|P61534|RUVB_LEPIC Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=ruvB PE=3 SV=1
Length = 341
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1211 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1270
L ++V + + + K+ + LI GPPG GKT T+ I+S L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIISNELGTRLT------------ 80
Query: 1271 INSRPKIGQSAAIAR 1285
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|Q10GP0|Y3198_ORYSJ Putative B3 domain-containing protein Os03g0619850 OS=Oryza sativa
subsp. japonica GN=Os03g0619850 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 797 ISDKRASQTESLK-NRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKK 855
I D S+ SLK NR + D S++ D GPA P +L L+SL K++ K +
Sbjct: 115 ILDSDGSENVSLKSNRNGVSDESQESEDSEGPAGPPYILSWKSKSRLSSLQKKIIKEKVR 174
Query: 856 ESNSKFNASDSLSFQNRVGLRNKPVE 881
S+ ++ ++ +GL + P +
Sbjct: 175 SIQSEVPIYVAIMNKSNIGLTSSPCQ 200
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 1206 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1253
N SQ+ A+ A+ LSLIQGPPGTGKT T IV L+
Sbjct: 452 LNRSQVYAVKHAL--------QRPLSLIQGPPGTGKTVTSATIVYQLV 491
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 1206 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1253
N SQ+QA+ + LSLIQGPPGTGKT IV L+
Sbjct: 446 LNSSQMQAVKQVLTRP--------LSLIQGPPGTGKTVVSATIVYHLV 485
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 1230 LSLIQGPPGTGKTRTIVAIVSAL 1252
LSLIQGPPGTGKT T IV L
Sbjct: 425 LSLIQGPPGTGKTVTSATIVYHL 447
>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus
norvegicus GN=Lrp2 PE=1 SV=1
Length = 4660
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 851 DGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELV-C 909
DGK NS N L F NR +RN + SS+ + Q NVVA +++ K L
Sbjct: 3189 DGKSCRQNS--NIEPYLIFSNRYYIRNLTTDGSSYSLILQGLGNVVALDFDRVEKRLYWI 3246
Query: 910 DVENDPLESSFKSGKHQQTYL 930
D E +E F + +++T +
Sbjct: 3247 DAEKQIIERMFLNKTNRETII 3267
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 1206 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1253
NESQ+ A++ + LSLIQGPPGTGKT I+ L+
Sbjct: 537 LNESQISAVNKVL--------TAPLSLIQGPPGTGKTVISSFIIHHLV 576
>sp|Q7MA56|RPOBC_WOLSU Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 /
LMG 7466 / NCTC 11488 / FDC 602W) GN=rpoBC PE=3 SV=1
Length = 2883
Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1271 INSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLICAQSN--AAVDEL 1328
+ SR IGQ + L QINE E K ++RA+++ AQ + VDE
Sbjct: 1133 VPSRMNIGQILEVHLGLVGKKLGAQINEMFENQTKDWMGALRAKIIEIAQVSKMTGVDEF 1192
Query: 1329 VSRISKEGL 1337
VS +S E L
Sbjct: 1193 VSSLSDEAL 1201
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 443 KCIL--EQVSNTRGLASGLKFLSSSTSSLSAIFLGLKHALKLVQ---LDSVLLKFQSLHH 497
KCI+ ++ R L+ L L S S +GL LK + ++++L +FQS
Sbjct: 490 KCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKEL 549
Query: 498 FFFVLRKIFEEG-HLPKCDLLKSSSGHSSITMFSSQGGFLRQPQFE-SFDANTGCSSNID 555
V K+ EEG + C L+ ++T F G R PQ E +F ++G +D
Sbjct: 550 NLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMD 609
Query: 556 L 556
L
Sbjct: 610 L 610
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,737,342
Number of Sequences: 539616
Number of extensions: 23034850
Number of successful extensions: 68378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 68138
Number of HSP's gapped (non-prelim): 320
length of query: 1545
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1414
effective length of database: 120,879,763
effective search space: 170923984882
effective search space used: 170923984882
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)