BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000414
(1541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 1077 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1136
VP D+ + L+ + G+G K+ V ++ A VD +V R++ RLG+ ++
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 1137 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1196
L+K P ++ H++MI FG+ CK +SP C +CPL C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 1197 K 1197
+
Sbjct: 209 R 209
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 1077 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 1136
VP D+ + L+ + G+G K+ V + A VD +V R++ RLG+ ++
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 1137 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 1196
L+K P ++ H++MI FG+ CK +SP C +CPL C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 1197 K 1197
+
Sbjct: 209 R 209
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 27/197 (13%)
Query: 1006 LLRRIYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV 1063
LLRR + ++ +DK + +E + +SEIA IKE G N A ++KE ++
Sbjct: 44 LLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVI 103
Query: 1064 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 1123
+G VP + ++ +LD+ G+G + V L+ A VD N R+ R
Sbjct: 104 NDYGG-------RVP--RNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINR- 153
Query: 1124 GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL-CYLDQKTLYELHYQMITFGKIFCKK 1182
+ Y ++ LW + + + ++ F I C
Sbjct: 154 --------------YFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAP 199
Query: 1183 RSPNCGACPLRGECKHF 1199
R P C C + C ++
Sbjct: 200 RKPKCEKCGMSKLCSYY 216
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING
CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 37.7 bits (86), Expect = 0.049, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1052 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1110
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 1111 PVDVNVGRIAVRLGWVP 1127
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
Dna Glycosylase In Complex With 8-Oxoguanosine
Length = 292
Score = 37.7 bits (86), Expect = 0.052, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1052 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1110
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 1111 PVDVNVGRIAVRLGWVP 1127
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
GlycosylaseLYASE IN COMPLEX WITH DSDNA CONTAINING ADENINE
Opposite To 8-Oxog
Length = 291
Score = 37.7 bits (86), Expect = 0.052, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1052 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1110
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 1111 PVDVNVGRIAVRLGWVP 1127
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum 8-Oxoguanine
GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 37.7 bits (86), Expect = 0.054, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1052 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 1110
A +K+ ++R+ +G ++LE+++++ ++ E L G+G K +C+ L S Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQKYSAF 238
Query: 1111 PVDVNVGRIAVRLGWVP 1127
PVD V + L P
Sbjct: 239 PVDTWVKKAXXSLYVAP 255
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog
(1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog
(1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1172 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1204
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1172 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1204
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1172 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1204
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 1172 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1204
+I G + C R P+C CP++ C+ FA VA
Sbjct: 182 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 214
>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid
Dehydrogenase (Y167f Mutated Form) From Fungus
Cochliobolus Lunatus
Length = 270
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 708 STSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQ 767
+ SN V S G++ VTE E DR L R F +R + L E G I V+T + S+
Sbjct: 100 AVSNSGVV-SFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRI-VLTSSNTSK 157
Query: 768 AFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFP 824
F S+ + LF D SF+ FS KK +VN + P
Sbjct: 158 DF------SVPKHSLFSGSKGAVD-----------SFVRIFSKDCGDKKITVNAVAP 197
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To A
Resolution Of 1.85 Angstrom
Length = 211
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 1042 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 1101
IK G N A I + L+E H VP D+ L + G+G K+ V
Sbjct: 76 IKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGRKTANVVL 126
Query: 1102 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 1161
+ VD ++ R+ R + P + + + LLK P K+ + W
Sbjct: 127 NTAFGWPTIAVDTHIFRVCNRTQFAPGKNVE-QVEEKLLKVVPAEFKVDCHHW------- 178
Query: 1162 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 1198
+I G+ C R P CG+C + C++
Sbjct: 179 ----------LILHGRYTCIARKPRCGSCIIEDLCEY 205
>pdb|1PU6|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU6|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU7|A Chain A, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU7|B Chain B, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU8|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
pdb|1PU8|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
Length = 218
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 1023 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI--DLEWLRNVPPD 1080
D ++ + + + S++A+ ++ G N A RL++L G+I D + N +
Sbjct: 65 DEINLKKIAYIEFSKLAECVRPSGFYNQKA-------KRLIDLSGNILKDFQSFENFKQE 117
Query: 1081 KVKEYLLDIEGLGLKSVECV 1100
+E+LLD +G+G +S + +
Sbjct: 118 VTREWLLDQKGIGKESADAI 137
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 306 VPRKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAP 365
V RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 172 VARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAM 221
Query: 366 FPGQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 222 HLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 216 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 275
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 276 QRDYSWHP 283
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without 8-Oxoguanine
Length = 324
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 213 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 272
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 273 QRDYSWHP 280
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human 8-Oxoguanine
Glycosylase Distally Crosslinked To Guanine-Containing
Dna
Length = 316
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 1120
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 207 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 266
Query: 1121 VR-LGWVP 1127
R W P
Sbjct: 267 QRDYSWHP 274
>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
Length = 313
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 221 KATPICSQPPKLP-----RKQAAAIEKNEAEVIYEPEASKDM----LLTDNLEK--NVAG 269
K PI S+ P+L KQ +A E + P + LL +LE ++
Sbjct: 35 KLEPIKSRAPQLHLEYRFYKQLSATEGVPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCD 94
Query: 270 RTIEPSVVVDLELQ----GNKSEGSPFKYEDFPLASYLTGVPRKKRKHPLELENFGLMDQ 325
RT V+ + +Q Y D ++L G P KR+H + + +FGL +
Sbjct: 95 RTFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGTKRQHAIHIIDFGLAKE 154
Query: 326 AIDSQKNLQEP 336
ID + P
Sbjct: 155 YIDPETKKHIP 165
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty (Core
Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a Mutant
Length = 225
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 1084 EYLLDIEGLGLKSVECVRLLSL-QHIAFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1141
E + + G+G + + LSL +H FP+ D NV R+ R + +
Sbjct: 109 EEVAALPGVGRSTAGAILSLSLGKH--FPILDGNVARVLAR--------------CYAVS 152
Query: 1142 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFCKKRSPNCGACPLRGECKHFA 1200
+P +++ LW + E Q M+ G + C + P C CPL+ C
Sbjct: 153 GWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC---- 208
Query: 1201 SAVASARFAL-PGPSEK 1216
A A+ +AL PG K
Sbjct: 209 IAAANNSWALYPGKKPK 225
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 172 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 221
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 222 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 273
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 30.4 bits (67), Expect = 8.9, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 223
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 224 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 275
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 30.4 bits (67), Expect = 8.9, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 308 RKKRKHPLELENFGLMDQAIDSQKNLQEPGLGLQEGFQEPRIGESPHFQEQKIDSLAPFP 367
RK+RKH + ++ +++ +K ++E G G P + + Q +D++A
Sbjct: 177 RKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGY------PDVA----LEHQYVDAMAMHL 226
Query: 368 GQSSGK-----TLPFPGHFISGLPQLNIGVLGLLPELSIGAVEPFLDQSNSS 414
+S + T G +S L + G LGLLP S+G P + + S
Sbjct: 227 VRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,417,852
Number of Sequences: 62578
Number of extensions: 1776133
Number of successful extensions: 3503
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 64
length of query: 1541
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1429
effective length of database: 7,964,601
effective search space: 11381414829
effective search space used: 11381414829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)