Query 000414
Match_columns 1541
No_of_seqs 238 out of 1979
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 17:19:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000414.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_192-196//hhsearch_pdb/000414hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 1.0 1 1 290.2 16.6 182 989-1202 33-214 (226)
2 3n5n_X A/G-specific adenine DN 1.0 1 1 290.0 16.5 184 988-1204 48-236 (287)
3 3fsp_A A/G-specific adenine gl 1.0 1 1 285.5 15.9 191 988-1214 38-232 (369)
4 2abk_A Endonuclease III; DNA-r 1.0 1 1 284.7 15.0 180 988-1200 28-207 (211)
5 1kea_A Possible G-T mismatches 1.0 1 1 280.7 15.1 183 988-1202 34-219 (221)
6 1kg2_A A/G-specific adenine gl 1.0 1 1 273.9 16.3 183 988-1203 29-215 (225)
7 1pu6_A 3-methyladenine DNA gly 1.0 1 1 229.6 12.2 174 988-1178 29-212 (218)
8 4b21_A Probable DNA-3-methylad 1.0 1 1 199.4 13.9 162 988-1155 59-223 (232)
9 2h56_A DNA-3-methyladenine gly 1.0 1 1 193.5 12.3 167 988-1179 50-218 (233)
10 3fhf_A Mjogg, N-glycosylase/DN 1.0 1 1 192.4 11.0 148 987-1182 42-196 (214)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=1.00 E-value=1 Score=290.19 Aligned_cols=182 Identities=23% Similarity=0.313 Sum_probs=167.5
Q ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 66651111100012699999999972300268889988899981999999999996099489999999999999998099
Q 000414 989 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 1068 (1541)
Q Consensus 989 ~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyGg 1068 (1541)
+....+++||+|||+|.++.+++.++.. .||+|++|+.++.++|+++|+++||+++||++|+++++.+.++||+
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~------~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g 106 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFE------KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG 106 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999999587869999999999999------8789999985999999999997699199999999999999998089
Q ss_pred CCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 89234306992589999761877768889999999339812212048989996618889999958999999942896256
Q 000414 1069 IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDK 1148 (1541)
Q Consensus 1069 IDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RLGLVp~kpspEEIEk~LeeLlPile~ 1148 (1541)
.+|.. +++|++|||||+|||++||+|+|++++||||+|+.|++.|+||++...++++++..+++++|
T Consensus 107 -------~~p~~--~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p---- 173 (226)
T 1orn_A 107 -------EVPRD--RDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP---- 173 (226)
T ss_dssp -------SCCSC--HHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC----
T ss_pred -------CCHHH--HHHHHHCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC----
T ss_conf -------81899--99999879964899999999977995400079999999992887789999999999988367----
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 765320000048946399999999999487433778888889981011557732
Q 000414 1149 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1202 (1541)
Q Consensus 1149 IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICtarKPnCdaCPLRs~CkyYasa 1202 (1541)
. +.+.++|.+||+||+.+|++++|+|+.|||++.|.+|.+.
T Consensus 174 --~-----------~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 174 --K-----------EEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp --G-----------GGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred --H-----------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf --4-----------1199999999999999858999999999776542667624
No 2
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=290.03 Aligned_cols=184 Identities=16% Similarity=0.225 Sum_probs=162.9
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
.+....|++||+|||++.++.+++.+|.+ .||+|++|+.++.++|+++|+++||++ ||++|+++++.+.++||
T Consensus 48 dpfe~LVs~ILsQQts~~~v~~~~~rL~~------~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~ 120 (287)
T 3n5n_X 48 RAYAVWVSEVMLQQTQVATVINYYTGWMQ------KWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELG 120 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH------HCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHC
T ss_conf 98999999999677859999999999999------878999998499999999999868799-99999999999999808
Q ss_pred CCCHHHHHCCCCHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHH----HH
Q ss_conf 989234306992589999761-8777688899999993398122120489899966188899999589999999----42
Q 000414 1068 SIDLEWLRNVPPDKVKEYLLD-IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL----KE 1142 (1541)
Q Consensus 1068 gIDLE~LrkIPdDeAREeLLS-LKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RLGLVp~kpspEEIEk~Le----eL 1142 (1541)
| .+|.+ ++.|++ |||||+|||++||+|+|++++|+||+||.||+.|+|+++...++.+++..+. .+
T Consensus 121 g-------~~p~~--~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~ 191 (287)
T 3n5n_X 121 G-------HMPRT--AETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQL 191 (287)
T ss_dssp T-------CCCSS--HHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHH
T ss_pred C-------CCCHH--HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9-------97189--99999876798889999999985279976025999999999478889998599999999999974
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 89625676532000004894639999999999948743377888888998101155773200
Q 000414 1143 YPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 1204 (1541)
Q Consensus 1143 lPile~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICtarKPnCdaCPLRs~CkyYasa~a 1204 (1541)
+| ...+.+||.+||+||+.||++++|+|+.|||++.|.+|.....
T Consensus 192 lp-----------------~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~ 236 (287)
T 3n5n_X 192 VD-----------------PARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQ 236 (287)
T ss_dssp SC-----------------SSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHH
T ss_pred CC-----------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCH
T ss_conf 89-----------------8889999999999819974899999988977655388871651
No 3
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=1.00 E-value=1 Score=285.47 Aligned_cols=191 Identities=21% Similarity=0.233 Sum_probs=166.2
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
.+....+++||+|||++.++..++.++.+ .+|||++|+.++.++|+++|+++||++ ||++|+++++.+.++||
T Consensus 38 ~p~~~lv~~il~qqt~~~~~~~~~~~l~~------~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~ 110 (369)
T 3fsp_A 38 DPYKVWVSEVMLQQTRVETVIPYFEQFID------RFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYG 110 (369)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHHHHH------HCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCC
T ss_conf 86999999999650759999999999999------777999997789999999998668499-99999999999999829
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHC
Q ss_conf 989234306992589999761877768889999999339812212048989996618889999----9589999999428
Q 000414 1068 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP----LPGDLHIHLLKEY 1143 (1541)
Q Consensus 1068 gIDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RLGLVp~kp----spEEIEk~LeeLl 1143 (1541)
+ .+|.. ++.|++|||||+|||++||+|+|++++|+||+||.|++.|+|+++... ++.+++..++.++
T Consensus 111 g-------~~p~~--~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3fsp_A 111 G-------KVPDD--PDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIM 181 (369)
T ss_dssp T-------CCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHC
T ss_pred C-------CCHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9-------98368--99985599867799999999977998133338999999997276667554324999999999847
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 96256765320000048946399999999999487433778888889981011557732000013579998
Q 000414 1144 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS 1214 (1541)
Q Consensus 1144 Pile~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICtarKPnCdaCPLRs~CkyYasa~asaRlalp~pe 1214 (1541)
| +. .+++||.+||+||+.+|++++|+|+.|||++.|.+|..... ..+|-..
T Consensus 182 p------~~-----------~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~---~~~PvK~ 232 (369)
T 3fsp_A 182 A------YE-----------NPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA---EELPVKM 232 (369)
T ss_dssp C------SS-----------SHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCG---GGCSCCC
T ss_pred C------HH-----------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC---CCCCCCC
T ss_conf 9------41-----------39999999999988763899998988878444489866986---6588655
No 4
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=1.00 E-value=1 Score=284.66 Aligned_cols=180 Identities=21% Similarity=0.218 Sum_probs=164.1
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
.+....+++||+|||+|.++.+++.++. ..||+|++|+.++.++|+++|+++||+++||++|+++++.+.++++
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~------~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~ 101 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLY------PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN 101 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHT------TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHH------HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9899999999967788999999999999------9878999998779999999999869976999999999999999849
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 98923430699258999976187776888999999933981221204898999661888999995899999994289625
Q 000414 1068 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 1147 (1541)
Q Consensus 1068 gIDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RLGLVp~kpspEEIEk~LeeLlPile 1147 (1541)
+ .+|.. +++|++|||||+|||++||+|+|++++||||+|+.|++.|+||.. .+++++++..+++++|
T Consensus 102 g-------~~~~~--~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~-~~~~~~~~~~~~~~~p--- 168 (211)
T 2abk_A 102 G-------EVPED--RAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVP--- 168 (211)
T ss_dssp T-------SCCSC--HHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSC-CSSHHHHHHHHHHHSC---
T ss_pred C-------CCHHH--HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCC---
T ss_conf 9-------84689--999984899976999999999779973776789999999948888-9999999999998557---
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 67653200000489463999999999994874337788888899810115577
Q 000414 1148 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFA 1200 (1541)
Q Consensus 1148 ~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICtarKPnCdaCPLRs~CkyYa 1200 (1541)
+..| .+||.+||+||+.+|++++|+|+.|||++.|.|+.
T Consensus 169 ---~~~~-----------~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T 2abk_A 169 ---AEFK-----------VDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_dssp ---GGGT-----------TTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTT
T ss_pred ---HHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
T ss_conf ---4219-----------99999999999997789999999999923278867
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=1.00 E-value=1 Score=280.72 Aligned_cols=183 Identities=22% Similarity=0.281 Sum_probs=160.3
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
.+....+++||+|||+|.++.+++.+|.+ .||+|++|+.++.++|+++|+++||+++||++|+++++.+.+.++
T Consensus 34 ~pfe~lv~~IlsQqts~~~~~~~~~~l~~------~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~ 107 (221)
T 1kea_A 34 DPYVILITEILLRRTTAGHVKKIYDKFFV------KYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYG 107 (221)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHHHHH------HCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98999999999764879999999999999------878999997789999999998779977999999999999999808
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHC-CCCCCCCC--HHHHHHHHHHHCC
Q ss_conf 98923430699258999976187776888999999933981221204898999661-88899999--5899999994289
Q 000414 1068 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL-GWVPLQPL--PGDLHIHLLKEYP 1144 (1541)
Q Consensus 1068 gIDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RL-GLVp~kps--pEEIEk~LeeLlP 1144 (1541)
+ .+|.. +++|++|||||+|||++||+|+|++++||||+||.|++.|+ ||...... ..++....+.+.|
T Consensus 108 g-------~~p~~--~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P 178 (221)
T 1kea_A 108 G-------RVPRN--RKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVP 178 (221)
T ss_dssp T-------SCCSC--HHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSC
T ss_pred C-------CCHHH--HHHHHHCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9-------96599--99998479972999999999866998022449999999997188778982789999999998688
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 6256765320000048946399999999999487433778888889981011557732
Q 000414 1145 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 1202 (1541)
Q Consensus 1145 ile~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICtarKPnCdaCPLRs~CkyYasa 1202 (1541)
.+.+++||.+||+||+.+|++++|+|+.|||++.|.+|...
T Consensus 179 -----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 179 -----------------GGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred -----------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCC
T ss_conf -----------------52199999999999899869999999989981316445317
No 6
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=1.00 E-value=1 Score=273.94 Aligned_cols=183 Identities=18% Similarity=0.194 Sum_probs=158.0
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
.+....+++||+|||+|.++.+++.++. ..||+|++|+.++.++|+++|+++||++ ||++|+++++.+.++++
T Consensus 29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~------~~~pt~~~la~~~~~~l~~~i~~~G~~~-kA~~l~~~a~~i~~~~~ 101 (225)
T 1kg2_A 29 TPYKVWLSEVMLQQTQVATVIPYFERFM------ARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHG 101 (225)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHH------HHCSSHHHHHHSCHHHHHHHHTTSCCTH-HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHH------HHCCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHC
T ss_conf 9899999999977687999999999999------9787999998779999999998678099-99999999999999838
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHH----HHHHHC
Q ss_conf 9892343069925899997618777688899999993398122120489899966188899999589999----999428
Q 000414 1068 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHI----HLLKEY 1143 (1541)
Q Consensus 1068 gIDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RLGLVp~kpspEEIEk----~LeeLl 1143 (1541)
+ .+|.. +++|++|||||+|||++||+|+|++++|+||+||.|++.|+|++....++...+. .++.++
T Consensus 102 g-------~~p~~--~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~ 172 (225)
T 1kg2_A 102 G-------KFPET--FEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVT 172 (225)
T ss_dssp T-------SCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHC
T ss_pred C-------CCHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9-------96489--99986589984999999999957998112679999999997488777773103999999999878
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 962567653200000489463999999999994874337788888899810115577320
Q 000414 1144 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 1203 (1541)
Q Consensus 1144 Pile~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICtarKPnCdaCPLRs~CkyYasa~ 1203 (1541)
| .+.+.+||.+||+||+.+|++++|+|+.|||++.|.+|....
T Consensus 173 p-----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 215 (225)
T 1kg2_A 173 P-----------------AVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNS 215 (225)
T ss_dssp C-----------------STTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTC
T ss_pred C-----------------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCC
T ss_conf 9-----------------341999999999998887689999999999834378977599
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=1.00 E-value=1 Score=229.55 Aligned_cols=174 Identities=15% Similarity=0.145 Sum_probs=146.4
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCC------HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 766651111100012699999999972300268889988------89998199999999999609948999999999999
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVD------WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 1061 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPT------pEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~ 1061 (1541)
.+....+++||+|||+|.++.+++.++.+ .++|+ |++|+.++.++|+++|+++||+++||++|+++++.
T Consensus 29 dpfe~Lv~~ILsQqts~~~v~~~~~~L~~-----~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~ 103 (218)
T 1pu6_A 29 LKFEALLGAVLTQNTKFEAVLKSLENLKN-----AFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGN 103 (218)
T ss_dssp TSHHHHHHHHHTTTSCHHHHHHHHHHHHH-----TTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 98999999999388879999999999997-----0499954336599998099999999999779939999999999999
Q ss_pred HHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99980998923430699258999976187776888999999933981221204898999661888999995899999994
Q 000414 1062 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 1141 (1541)
Q Consensus 1062 IvedyGgIDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRpaFPVDTHV~RIL~RLGLVp~kpspEEIEk~Lee 1141 (1541)
+.+++++ ++.+ +..+++++|++|||||+|||+|||+|+|++++||||+|+.|++.|+||. .++|++++..+++
T Consensus 104 i~~~~~~--l~~~---~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 104 ILKDFQS--FENF---KQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIE--IEDYDELQHFFEK 176 (218)
T ss_dssp HHHHHSS--HHHH---HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCC--CCSHHHHHHHHHH
T ss_pred HHHHCCC--HHHC---CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC--CCCHHHHHHHHHH
T ss_conf 9985498--6526---4357999997589927999999999977999550179999999984999--9999999999997
Q ss_pred HCC----CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 289----6256765320000048946399999999999487
Q 000414 1142 EYP----VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 1178 (1541)
Q Consensus 1142 LlP----ile~IqK~LW~RLc~lD~etl~ELH~lLIeFGKe 1178 (1541)
.+| ....+....|. +.+.+++||.+||.|||.
T Consensus 177 ~~p~~lp~~~~~~~~~~~-----~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 177 GVQENLNSALALYENTIS-----LAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHTTHHHHHHTTTTCSC-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHCCCCCC-----HHHHHHHHHHHHHHHHHH
T ss_conf 534307603210012334-----399999999999998110
No 8
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=1.00 E-value=1 Score=199.41 Aligned_cols=162 Identities=13% Similarity=0.122 Sum_probs=142.6
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
-+....+.+|++||++|.++.+++.+|.++......||+|++|+.++.++| +.+||+++||++|+++++.+.+ |
T Consensus 59 dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~L----r~~Gl~~~Ka~~l~~~A~~~~~--g 132 (232)
T 4b21_A 59 APYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETL----HECGFSKLKSQEIHIVAEAALN--K 132 (232)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHH----HTTTCCHHHHHHHHHHHHHHHT--T
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHH----HHCCCCHHHHHHHHHHHHHHHH--C
T ss_conf 999999999996847699999999999998498878999999986999999----8869969999999999999996--7
Q ss_pred CC-CHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-EEEC-CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98-923430699258999976187776888999999933981-2212-04898999661888999995899999994289
Q 000414 1068 SI-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 1144 (1541)
Q Consensus 1068 gI-DLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRp-aFPV-DTHV~RIL~RLGLVp~kpspEEIEk~LeeLlP 1144 (1541)
.+ +++.|..++++++++.|++|||||+|||+|||+|+|+++ +||| |+||.|++.|++..+..+++.+++...+.+-|
T Consensus 133 ~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P 212 (232)
T 4b21_A 133 QIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKP 212 (232)
T ss_dssp CSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTT
T ss_pred CCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 99889998728989999999838994889999999984899981117138999999997078778999999999988147
Q ss_pred CHHHHHHHHHH
Q ss_conf 62567653200
Q 000414 1145 VMDKIQMYLWP 1155 (1541)
Q Consensus 1145 ile~IqK~LW~ 1155 (1541)
+....+.|+|.
T Consensus 213 ~rs~A~~yLw~ 223 (232)
T 4b21_A 213 YRTIAAWYLWQ 223 (232)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 9
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=1.00 E-value=1 Score=193.52 Aligned_cols=167 Identities=16% Similarity=0.029 Sum_probs=138.8
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76665111110001269999999997230026888998889998199999999999609948999999999999999809
Q 000414 988 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 1067 (1541)
Q Consensus 988 K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lGf~nrKAKrIkeLAr~IvedyG 1067 (1541)
.+...++.+||+||++|.++.+++.+|.++... -||+|++|+.++.++| +.+||+++||++|+++++.+.+ |
T Consensus 50 dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~--~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~--~ 121 (233)
T 2h56_A 50 NPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG--ALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVES--G 121 (233)
T ss_dssp CHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS--CCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--T
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCCHHHHHCCCHHHH----HHCCCCHHHHHHHHHHHHHHHH--C
T ss_conf 999999999990977799999999999998189--9999999974999999----8869978999999999999994--8
Q ss_pred CCCHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-EEECCHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHCCC
Q ss_conf 98923430699258999976187776888999999933981-22120489899966188899-99958999999942896
Q 000414 1068 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPL-QPLPGDLHIHLLKEYPV 1145 (1541)
Q Consensus 1068 gIDLE~LrkIPdDeAREeLLSLKGIGpKTADcILLFALgRp-aFPVDTHV~RIL~RLGLVp~-kpspEEIEk~LeeLlPi 1145 (1541)
.++++.+..+|+++++++|++|||||+|||+|||+|+|+++ +||||+|+.|++.|+++... .+++++++..++.+.|.
T Consensus 122 ~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P~ 201 (233)
T 2h56_A 122 RLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPY 201 (233)
T ss_dssp SSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTTC
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCH
T ss_conf 98989986499999999998289868899999999957999965473299999999852677899999999999883869
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2567653200000489463999999999994874
Q 000414 1146 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIF 1179 (1541)
Q Consensus 1146 le~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeI 1179 (1541)
. .+..+|.|.++++..-
T Consensus 202 ~-----------------~~a~~~lw~~~~~~~~ 218 (233)
T 2h56_A 202 E-----------------TVACLYLWKAAGTFAE 218 (233)
T ss_dssp H-----------------HHHHHHHHHHHTHHHH
T ss_pred H-----------------HHHHHHHHHCCCCCCC
T ss_conf 9-----------------9999999964665542
No 10
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=1.00 E-value=1 Score=192.35 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=124.5
Q ss_pred CCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CHHHHHHHHHHHHH--HH
Q ss_conf 776665111110001269999999997230026888998889998199999999999609--94899999999999--99
Q 000414 987 TKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLN--RL 1062 (1541)
Q Consensus 987 ~K~kk~~VgAILsQQTsWesVrKaiaRLreRg~~~adfPTpEALAkAs~EELeelIR~lG--f~nrKAKrIkeLAr--~I 1062 (1541)
..+...++++||+|||+|.++.+++.+|. ++|+.++.++|+++|+++| |+++||++|+++++ .+
T Consensus 42 ~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l 109 (214)
T 3fhf_A 42 EEWFKELCFCILTANFTAEGGIRIQKEIG------------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNI 109 (214)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHT------------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99699999999827788999999999999------------999879999999999997247799999999999976689
Q ss_pred HHHHCCCCHHHHHCC-CCHHHHHHHH-CCCCCCHHHHHHHHHHHCCCCEEE-CCHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 998099892343069-9258999976-187776888999999933981221-2048989996618889999958999999
Q 000414 1063 VELHGSIDLEWLRNV-PPDKVKEYLL-DIEGLGLKSVECVRLLSLQHIAFP-VDVNVGRIAVRLGWVPLQPLPGDLHIHL 1139 (1541)
Q Consensus 1063 vedyGgIDLE~LrkI-PdDeAREeLL-SLKGIGpKTADcILLFALgRpaFP-VDTHV~RIL~RLGLVp~kpspEEIEk~L 1139 (1541)
.+.++ .+ +..+++++|+ +|||||+|||+|||+++ +.+.|+ ||+||.|++.||||++.. +
T Consensus 110 ~~~~~--------~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~--~------- 171 (214)
T 3fhf_A 110 KDIVE--------SFENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEI--P------- 171 (214)
T ss_dssp HHHHH--------HSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSC--C-------
T ss_pred HHHHC--------CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHCCCCCCC--C-------
T ss_conf 99863--------6478579999999808998799999999974-9988320719999999984898888--7-------
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9428962567653200000489463999999999994874337
Q 000414 1140 LKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 1182 (1541)
Q Consensus 1140 eeLlPile~IqK~LW~RLc~lD~etl~ELH~lLIeFGKeICta 1182 (1541)
+. ++...+.++|..|+.||+.+|.+
T Consensus 172 -k~-----------------lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 172 -KT-----------------LSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp -SS-----------------CCHHHHHHHHHHHHHHHHHTTCC
T ss_pred -CC-----------------CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf -76-----------------99999999999999999997979
Done!