Query 000419
Match_columns 1530
No_of_seqs 617 out of 3084
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-239 3E-244 2218.1 101.4 1369 2-1472 1-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 5E-204 1E-208 1923.4 76.9 769 4-777 27-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 5E-189 1E-193 1768.2 65.1 674 62-735 1-674 (674)
4 KOG0161 Myosin class II heavy 100.0 4E-186 9E-191 1822.7 94.3 1034 5-1052 25-1120(1930)
5 KOG0160 Myosin class V heavy c 100.0 5E-185 1E-189 1700.5 66.1 752 60-824 6-758 (862)
6 cd01380 MYSc_type_V Myosin mot 100.0 1E-184 2E-189 1739.7 63.0 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 3E-184 6E-189 1727.7 62.6 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 5E-184 1E-188 1734.0 64.8 667 60-731 3-693 (693)
9 KOG0163 Myosin class VI heavy 100.0 4E-180 8E-185 1551.7 78.9 791 8-815 2-844 (1259)
10 KOG0164 Myosin class I heavy c 100.0 1E-182 3E-187 1574.7 58.9 728 61-805 7-755 (1001)
11 cd01383 MYSc_type_VIII Myosin 100.0 1E-182 3E-187 1710.6 62.6 657 60-731 6-677 (677)
12 cd01378 MYSc_type_I Myosin mot 100.0 2E-182 4E-187 1715.0 63.0 662 63-731 1-674 (674)
13 cd01387 MYSc_type_XV Myosin mo 100.0 1E-181 2E-186 1705.8 63.2 661 62-731 1-677 (677)
14 cd01385 MYSc_type_IX Myosin mo 100.0 3E-181 6E-186 1705.6 65.4 664 61-732 6-689 (692)
15 cd01382 MYSc_type_VI Myosin mo 100.0 5E-181 1E-185 1709.5 64.4 665 60-731 2-716 (717)
16 cd01379 MYSc_type_III Myosin m 100.0 1E-178 3E-183 1668.6 63.5 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 3E-177 7E-182 1677.3 64.6 668 60-732 4-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 3E-177 7E-182 1527.6 52.3 695 60-765 16-725 (1106)
19 cd00124 MYSc Myosin motor doma 100.0 3E-175 7E-180 1664.8 63.8 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 6E-175 1E-179 1653.9 61.8 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 8E-167 2E-171 1609.9 54.2 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 5E-116 1E-120 1112.8 28.2 752 60-826 59-1008(1062)
23 KOG1892 Actin filament-binding 100.0 5E-31 1.1E-35 314.5 21.2 263 1158-1497 595-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 2.8E-27 6.1E-32 233.3 6.6 105 1348-1455 1-105 (105)
25 KOG0161 Myosin class II heavy 99.6 2.8E-11 6.1E-16 164.3 48.5 750 235-1050 218-1034(1930)
26 cd01363 Motor_domain Myosin an 98.7 2.1E-08 4.5E-13 110.0 6.8 88 132-230 8-98 (186)
27 COG5022 Myosin heavy chain [Cy 98.4 0.0003 6.6E-09 93.1 34.5 130 748-880 734-867 (1463)
28 KOG0520 Uncharacterized conser 98.3 1.4E-06 3E-11 111.4 9.1 122 734-855 808-937 (975)
29 KOG0160 Myosin class V heavy c 98.2 8.5E-06 1.8E-10 104.5 13.3 86 784-872 673-758 (862)
30 PF02736 Myosin_N: Myosin N-te 98.2 4.1E-06 8.9E-11 67.9 6.7 41 10-50 1-41 (42)
31 KOG0520 Uncharacterized conser 98.0 2.7E-05 5.9E-10 99.9 10.9 117 760-880 811-939 (975)
32 KOG0971 Microtubule-associated 97.7 0.034 7.4E-07 70.3 31.1 29 1318-1346 897-925 (1243)
33 KOG1029 Endocytic adaptor prot 97.6 0.28 6.1E-06 61.5 36.1 24 1368-1391 1008-1031(1118)
34 KOG1029 Endocytic adaptor prot 97.5 0.02 4.4E-07 71.0 23.9 46 972-1017 471-516 (1118)
35 TIGR02169 SMC_prok_A chromosom 97.4 1.3 2.8E-05 62.8 46.2 9 433-441 5-13 (1164)
36 PRK11637 AmiB activator; Provi 97.2 0.074 1.6E-06 66.4 26.3 30 1013-1042 224-253 (428)
37 KOG0996 Structural maintenance 97.2 0.51 1.1E-05 62.4 33.2 17 1436-1452 1202-1218(1293)
38 TIGR02169 SMC_prok_A chromosom 97.2 2.7 5.9E-05 59.6 45.7 8 520-527 38-45 (1164)
39 PF09726 Macoilin: Transmembra 97.2 0.11 2.4E-06 67.7 27.5 67 981-1047 588-654 (697)
40 KOG0971 Microtubule-associated 97.1 0.43 9.2E-06 61.0 30.0 19 1339-1357 890-908 (1243)
41 KOG0250 DNA repair protein RAD 97.0 1.7 3.6E-05 57.8 36.0 45 1329-1373 914-958 (1074)
42 PF09726 Macoilin: Transmembra 97.0 0.14 3E-06 66.8 26.9 80 972-1051 544-651 (697)
43 KOG0250 DNA repair protein RAD 97.0 0.4 8.8E-06 63.2 30.2 23 882-904 288-310 (1074)
44 PRK11637 AmiB activator; Provi 97.0 0.24 5.2E-06 61.9 27.4 34 1016-1049 220-253 (428)
45 PRK04863 mukB cell division pr 96.9 2 4.3E-05 60.9 37.8 41 1011-1051 438-478 (1486)
46 COG1196 Smc Chromosome segrega 96.9 4.4 9.6E-05 57.2 43.2 42 1006-1047 451-492 (1163)
47 KOG0933 Structural maintenance 96.9 0.62 1.3E-05 60.6 29.5 21 154-178 30-50 (1174)
48 KOG0164 Myosin class I heavy c 96.7 0.0099 2.2E-07 73.3 12.1 63 756-828 693-755 (1001)
49 TIGR02168 SMC_prok_B chromosom 96.7 3 6.6E-05 59.1 38.4 8 699-706 125-132 (1179)
50 KOG0163 Myosin class VI heavy 96.7 0.69 1.5E-05 57.9 26.5 67 176-245 149-221 (1259)
51 COG4942 Membrane-bound metallo 96.7 0.63 1.4E-05 56.2 26.0 58 992-1049 194-251 (420)
52 KOG4229 Myosin VII, myosin IXB 96.6 0.00083 1.8E-08 89.0 1.9 117 605-721 644-761 (1062)
53 PF07888 CALCOCO1: Calcium bin 96.6 0.28 6E-06 61.2 23.2 8 895-902 170-177 (546)
54 PF00261 Tropomyosin: Tropomyo 96.5 0.61 1.3E-05 53.4 24.3 77 975-1051 143-219 (237)
55 KOG0933 Structural maintenance 96.5 2 4.2E-05 56.3 30.0 11 408-418 316-326 (1174)
56 COG1579 Zn-ribbon protein, pos 96.5 0.53 1.1E-05 53.1 22.5 34 974-1007 90-123 (239)
57 PF00612 IQ: IQ calmodulin-bin 96.5 0.0035 7.7E-08 42.9 3.5 18 786-803 3-20 (21)
58 KOG2128 Ras GTPase-activating 96.4 0.065 1.4E-06 71.6 17.1 89 766-854 542-644 (1401)
59 PF00612 IQ: IQ calmodulin-bin 96.4 0.0039 8.5E-08 42.6 3.3 20 760-779 2-21 (21)
60 PF12128 DUF3584: Protein of u 96.4 9 0.00019 54.3 40.4 34 740-773 226-259 (1201)
61 PRK02224 chromosome segregatio 96.2 6.5 0.00014 54.1 35.9 9 717-725 133-141 (880)
62 KOG4643 Uncharacterized coiled 96.2 0.85 1.8E-05 59.3 24.3 33 885-917 404-436 (1195)
63 KOG1853 LIS1-interacting prote 96.2 0.91 2E-05 50.0 21.1 21 983-1003 108-128 (333)
64 PF12718 Tropomyosin_1: Tropom 96.1 0.98 2.1E-05 47.4 21.1 26 921-946 35-60 (143)
65 PHA02562 46 endonuclease subun 96.1 0.94 2E-05 58.8 25.8 30 1017-1046 353-382 (562)
66 PF14662 CCDC155: Coiled-coil 96.1 0.58 1.3E-05 50.4 19.0 79 974-1052 61-139 (193)
67 PRK02224 chromosome segregatio 96.0 1.9 4.1E-05 59.2 29.6 14 1036-1049 412-425 (880)
68 PF05667 DUF812: Protein of un 96.0 1.6 3.4E-05 56.2 25.9 73 971-1043 445-526 (594)
69 COG1196 Smc Chromosome segrega 95.9 14 0.0003 52.3 45.9 17 1379-1395 946-962 (1163)
70 PF00038 Filament: Intermediat 95.9 2.9 6.4E-05 49.9 27.0 34 884-917 70-103 (312)
71 PRK09039 hypothetical protein; 95.9 1 2.2E-05 54.4 22.6 27 888-914 52-78 (343)
72 PRK09039 hypothetical protein; 95.8 0.79 1.7E-05 55.3 21.5 14 893-906 78-91 (343)
73 KOG0925 mRNA splicing factor A 95.8 0.0081 1.8E-07 71.5 4.3 56 102-166 24-79 (699)
74 PHA02562 46 endonuclease subun 95.8 3 6.5E-05 54.2 28.5 35 1012-1046 355-389 (562)
75 KOG1003 Actin filament-coating 95.8 2.6 5.6E-05 45.4 22.1 80 972-1051 108-187 (205)
76 KOG0994 Extracellular matrix g 95.7 12 0.00025 49.9 38.0 59 993-1051 1688-1746(1758)
77 PRK03918 chromosome segregatio 95.7 1.5 3.3E-05 60.1 26.5 18 152-169 26-43 (880)
78 KOG0980 Actin-binding protein 95.7 6.9 0.00015 50.9 29.1 17 609-625 201-217 (980)
79 KOG2128 Ras GTPase-activating 95.7 0.36 7.7E-06 65.0 18.8 141 740-880 481-647 (1401)
80 PRK03918 chromosome segregatio 95.7 2.7 5.9E-05 57.7 28.8 14 1458-1471 824-837 (880)
81 KOG0980 Actin-binding protein 95.6 8.6 0.00019 50.0 29.6 10 1434-1443 934-943 (980)
82 PF08317 Spc7: Spc7 kinetochor 95.6 1.3 2.9E-05 53.1 22.4 80 972-1051 208-291 (325)
83 PF14662 CCDC155: Coiled-coil 95.6 4.2 9.1E-05 44.0 23.4 30 1016-1045 159-188 (193)
84 KOG0976 Rho/Rac1-interacting s 95.6 9.6 0.00021 48.7 29.1 35 1016-1050 271-305 (1265)
85 PF15070 GOLGA2L5: Putative go 95.6 1.4 3.1E-05 56.8 23.4 13 1485-1497 594-606 (617)
86 PF12128 DUF3584: Protein of u 95.5 19 0.00042 51.1 47.8 26 632-657 111-136 (1201)
87 COG4372 Uncharacterized protei 95.5 4.5 9.7E-05 47.6 24.2 57 980-1036 224-280 (499)
88 COG1579 Zn-ribbon protein, pos 95.5 3.1 6.7E-05 47.1 22.6 38 972-1009 95-132 (239)
89 PF09755 DUF2046: Uncharacteri 95.3 5.1 0.00011 46.7 24.1 20 1032-1051 181-200 (310)
90 TIGR00606 rad50 rad50. This fa 95.3 10 0.00022 54.4 32.9 21 150-170 29-49 (1311)
91 COG4372 Uncharacterized protei 95.3 8.5 0.00018 45.4 29.4 73 972-1044 209-281 (499)
92 PTZ00014 myosin-A; Provisional 95.3 0.034 7.4E-07 73.7 7.8 39 786-824 779-817 (821)
93 KOG4593 Mitotic checkpoint pro 95.2 13 0.00029 47.3 31.6 20 1032-1051 295-314 (716)
94 TIGR00606 rad50 rad50. This fa 95.2 5.7 0.00012 56.9 30.0 23 1161-1183 1142-1164(1311)
95 KOG0018 Structural maintenance 95.1 18 0.0004 48.3 35.1 40 785-824 211-250 (1141)
96 KOG0999 Microtubule-associated 95.1 2.4 5.3E-05 51.7 21.2 24 1013-1036 168-191 (772)
97 KOG4643 Uncharacterized coiled 95.0 13 0.00028 49.1 28.4 15 435-449 31-45 (1195)
98 KOG0996 Structural maintenance 94.9 21 0.00046 48.1 43.7 9 722-730 251-259 (1293)
99 KOG1103 Predicted coiled-coil 94.9 5.3 0.00012 46.0 22.4 50 1001-1050 245-294 (561)
100 KOG0977 Nuclear envelope prote 94.9 7.5 0.00016 48.9 25.7 29 1021-1049 341-369 (546)
101 PRK04863 mukB cell division pr 94.9 30 0.00066 49.6 38.3 30 973-1002 449-478 (1486)
102 KOG0995 Centromere-associated 94.8 14 0.0003 46.3 27.3 15 883-897 309-323 (581)
103 COG3883 Uncharacterized protei 94.8 9.2 0.0002 43.9 24.1 19 922-940 81-99 (265)
104 KOG0612 Rho-associated, coiled 94.8 15 0.00032 49.7 28.8 22 1027-1048 672-693 (1317)
105 PF05667 DUF812: Protein of un 94.8 2.3 5E-05 54.7 21.7 42 1010-1051 442-483 (594)
106 KOG1853 LIS1-interacting prote 94.7 3 6.4E-05 46.2 19.0 31 977-1007 95-125 (333)
107 PF04849 HAP1_N: HAP1 N-termin 94.7 7.6 0.00017 45.4 23.6 60 983-1042 230-289 (306)
108 KOG0977 Nuclear envelope prote 94.7 9.4 0.0002 48.1 25.9 23 882-904 56-78 (546)
109 TIGR02168 SMC_prok_B chromosom 94.7 31 0.00068 49.0 48.9 9 673-681 124-132 (1179)
110 PF15619 Lebercilin: Ciliary p 94.7 8.1 0.00017 42.7 22.9 67 975-1041 120-190 (194)
111 KOG4673 Transcription factor T 94.6 18 0.00039 45.7 32.4 18 1010-1027 614-631 (961)
112 PF04849 HAP1_N: HAP1 N-termin 94.6 1.4 3.1E-05 51.2 17.3 7 1041-1047 295-301 (306)
113 PF08317 Spc7: Spc7 kinetochor 94.5 4.4 9.4E-05 48.7 22.4 10 670-679 13-22 (325)
114 smart00015 IQ Short calmodulin 94.5 0.038 8.3E-07 40.0 3.0 19 785-803 4-22 (26)
115 smart00015 IQ Short calmodulin 94.4 0.041 8.8E-07 39.8 3.0 20 759-778 3-22 (26)
116 PF12718 Tropomyosin_1: Tropom 94.4 6.2 0.00014 41.4 20.3 16 1027-1042 120-135 (143)
117 KOG4360 Uncharacterized coiled 94.4 1.1 2.5E-05 54.2 16.3 32 1019-1050 272-303 (596)
118 smart00787 Spc7 Spc7 kinetocho 94.4 4.9 0.00011 47.8 21.8 10 669-678 8-17 (312)
119 PF10481 CENP-F_N: Cenp-F N-te 94.3 1.2 2.5E-05 50.1 15.1 75 980-1054 60-134 (307)
120 KOG0982 Centrosomal protein Nu 94.3 14 0.0003 44.3 24.4 14 1038-1051 405-418 (502)
121 KOG4674 Uncharacterized conser 94.2 40 0.00087 48.2 35.1 72 887-958 764-835 (1822)
122 PRK01156 chromosome segregatio 94.1 35 0.00075 47.2 37.0 34 1017-1050 411-444 (895)
123 PF15066 CAGE1: Cancer-associa 94.1 4.1 8.8E-05 49.2 19.9 26 882-907 331-356 (527)
124 KOG0612 Rho-associated, coiled 94.1 12 0.00025 50.6 25.7 37 879-915 498-534 (1317)
125 PF15070 GOLGA2L5: Putative go 94.0 27 0.00058 45.5 31.4 20 887-906 85-104 (617)
126 PF06785 UPF0242: Uncharacteri 94.0 6.4 0.00014 45.6 20.4 23 1028-1050 200-222 (401)
127 KOG0979 Structural maintenance 94.0 7.7 0.00017 51.3 23.5 31 1319-1349 834-865 (1072)
128 PF04091 Sec15: Exocyst comple 94.0 0.35 7.6E-06 57.5 11.3 132 1318-1450 177-311 (311)
129 PF10168 Nup88: Nuclear pore c 93.7 7.3 0.00016 51.6 23.7 21 621-641 421-441 (717)
130 PF10473 CENP-F_leu_zip: Leuci 93.7 10 0.00022 39.6 20.6 6 897-902 25-30 (140)
131 TIGR03185 DNA_S_dndD DNA sulfu 93.7 18 0.0004 47.8 27.8 68 983-1050 394-463 (650)
132 PF13207 AAA_17: AAA domain; P 93.7 0.046 1E-06 55.2 2.9 23 151-173 1-23 (121)
133 COG3883 Uncharacterized protei 93.6 17 0.00036 41.8 23.3 67 883-953 39-105 (265)
134 KOG1937 Uncharacterized conser 93.6 9.1 0.0002 46.2 21.4 74 927-1007 306-379 (521)
135 PF15619 Lebercilin: Ciliary p 93.5 15 0.00032 40.7 23.1 62 982-1043 120-185 (194)
136 KOG2129 Uncharacterized conser 93.5 21 0.00047 42.5 28.0 28 971-998 251-278 (552)
137 KOG0999 Microtubule-associated 93.4 26 0.00056 43.3 27.1 31 976-1006 152-182 (772)
138 KOG0978 E3 ubiquitin ligase in 93.4 33 0.00072 44.6 38.0 45 1010-1054 575-619 (698)
139 KOG0946 ER-Golgi vesicle-tethe 93.4 15 0.00032 47.5 23.9 74 976-1049 809-882 (970)
140 COG1340 Uncharacterized archae 93.3 20 0.00043 41.8 25.4 11 924-934 110-120 (294)
141 PF08614 ATG16: Autophagy prot 93.3 0.55 1.2E-05 52.0 10.8 60 989-1048 118-177 (194)
142 smart00787 Spc7 Spc7 kinetocho 93.2 9.5 0.00021 45.4 21.3 15 1037-1051 272-286 (312)
143 PF13851 GAS: Growth-arrest sp 93.1 17 0.00037 40.5 24.5 78 968-1045 88-166 (201)
144 PF09755 DUF2046: Uncharacteri 93.0 23 0.00049 41.6 27.9 10 1027-1036 183-192 (310)
145 PF05911 DUF869: Plant protein 93.0 25 0.00054 46.8 26.3 23 1036-1058 190-212 (769)
146 KOG0982 Centrosomal protein Nu 92.9 6.1 0.00013 47.2 18.5 81 971-1051 302-389 (502)
147 COG4942 Membrane-bound metallo 92.6 31 0.00068 42.2 28.4 23 1013-1035 222-244 (420)
148 PRK04778 septation ring format 92.6 14 0.00031 48.0 23.8 14 712-725 59-72 (569)
149 PF13401 AAA_22: AAA domain; P 92.5 0.082 1.8E-06 54.1 2.7 29 147-175 2-30 (131)
150 KOG0964 Structural maintenance 92.5 10 0.00022 49.9 21.0 183 866-1051 166-350 (1200)
151 PF13870 DUF4201: Domain of un 92.2 21 0.00045 39.0 21.1 26 1017-1042 147-172 (177)
152 KOG1937 Uncharacterized conser 92.1 23 0.0005 42.9 21.9 15 663-677 75-89 (521)
153 PF10168 Nup88: Nuclear pore c 92.0 16 0.00034 48.5 23.2 52 541-593 377-433 (717)
154 PF13191 AAA_16: AAA ATPase do 92.0 0.11 2.3E-06 56.6 3.0 34 143-176 18-51 (185)
155 PF09789 DUF2353: Uncharacteri 92.0 32 0.0007 40.8 25.5 29 1024-1052 191-219 (319)
156 PF13238 AAA_18: AAA domain; P 91.9 0.11 2.3E-06 52.8 2.7 22 152-173 1-22 (129)
157 COG5185 HEC1 Protein involved 91.8 38 0.00082 41.3 23.5 37 1016-1052 474-510 (622)
158 PF10481 CENP-F_N: Cenp-F N-te 91.7 9 0.0002 43.3 17.1 34 973-1006 95-128 (307)
159 PF07111 HCR: Alpha helical co 91.6 51 0.0011 42.5 25.9 24 896-919 115-138 (739)
160 PF09730 BicD: Microtubule-ass 91.6 16 0.00034 48.0 21.9 11 1182-1192 394-404 (717)
161 KOG0018 Structural maintenance 91.6 64 0.0014 43.5 29.2 83 968-1051 809-892 (1141)
162 cd02019 NK Nucleoside/nucleoti 91.4 0.15 3.2E-06 46.3 2.8 22 152-173 2-23 (69)
163 TIGR02322 phosphon_PhnN phosph 91.3 0.14 3E-06 55.8 2.8 24 150-173 2-25 (179)
164 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.1 13 0.00028 38.5 17.0 31 1020-1050 96-126 (132)
165 PF15397 DUF4618: Domain of un 91.1 34 0.00073 39.4 26.0 30 1022-1051 193-222 (258)
166 cd00009 AAA The AAA+ (ATPases 91.1 0.25 5.4E-06 50.7 4.5 29 146-174 16-44 (151)
167 KOG0946 ER-Golgi vesicle-tethe 91.1 16 0.00035 47.2 20.4 16 554-569 390-405 (970)
168 KOG0249 LAR-interacting protei 91.1 26 0.00056 44.8 21.7 20 1369-1396 756-775 (916)
169 TIGR01843 type_I_hlyD type I s 91.0 34 0.00074 42.5 24.3 21 981-1001 204-224 (423)
170 TIGR03015 pepcterm_ATPase puta 91.0 0.21 4.5E-06 58.2 4.2 28 147-174 41-68 (269)
171 TIGR00150 HI0065_YjeE ATPase, 91.0 0.3 6.6E-06 50.4 4.8 27 147-173 20-46 (133)
172 COG1340 Uncharacterized archae 90.9 37 0.00081 39.6 28.7 31 1013-1043 219-249 (294)
173 PF15254 CCDC14: Coiled-coil d 90.9 63 0.0014 42.1 25.6 67 977-1043 491-557 (861)
174 COG0444 DppD ABC-type dipeptid 90.6 0.15 3.2E-06 59.6 2.4 28 147-174 29-56 (316)
175 PF04156 IncA: IncA protein; 90.6 7.4 0.00016 42.9 15.7 29 1015-1043 158-186 (191)
176 PF04111 APG6: Autophagy prote 90.5 1.5 3.3E-05 52.2 10.7 37 1016-1052 100-136 (314)
177 KOG4360 Uncharacterized coiled 90.4 17 0.00038 44.5 19.0 27 1019-1045 265-291 (596)
178 PF00038 Filament: Intermediat 90.3 46 0.001 39.7 34.4 31 976-1006 219-249 (312)
179 TIGR03007 pepcterm_ChnLen poly 90.2 23 0.0005 45.3 22.1 17 971-987 252-268 (498)
180 KOG0963 Transcription factor/C 90.2 64 0.0014 41.1 28.0 15 1037-1051 345-359 (629)
181 PRK09270 nucleoside triphospha 90.2 0.41 8.9E-06 54.5 5.5 34 145-178 29-62 (229)
182 PF00004 AAA: ATPase family as 90.1 0.19 4E-06 51.3 2.5 23 152-174 1-23 (132)
183 PRK13833 conjugal transfer pro 90.1 0.29 6.2E-06 58.3 4.3 34 140-175 137-170 (323)
184 cd00820 PEPCK_HprK Phosphoenol 90.1 0.22 4.8E-06 49.3 2.8 23 148-170 14-36 (107)
185 PRK06696 uridine kinase; Valid 90.1 0.35 7.6E-06 54.8 4.9 40 134-175 9-48 (223)
186 PRK10884 SH3 domain-containing 90.0 3.6 7.8E-05 45.8 12.5 77 972-1051 92-168 (206)
187 cd01918 HprK_C HprK/P, the bif 90.0 0.22 4.9E-06 52.3 2.9 25 148-172 13-37 (149)
188 cd01131 PilT Pilus retraction 90.0 0.2 4.4E-06 55.7 2.7 25 151-175 3-27 (198)
189 PRK05480 uridine/cytidine kina 90.0 0.24 5.3E-06 55.4 3.4 27 147-173 4-30 (209)
190 PRK00300 gmk guanylate kinase; 89.9 0.2 4.4E-06 55.8 2.7 26 148-173 4-29 (205)
191 PTZ00121 MAEBL; Provisional 89.9 1E+02 0.0022 43.0 36.3 33 65-97 162-194 (2084)
192 COG0194 Gmk Guanylate kinase [ 89.9 0.2 4.3E-06 54.1 2.4 25 149-173 4-28 (191)
193 PF07111 HCR: Alpha helical co 89.8 73 0.0016 41.2 26.9 32 1012-1043 246-277 (739)
194 KOG0804 Cytoplasmic Zn-finger 89.8 10 0.00022 45.9 16.3 12 659-670 104-115 (493)
195 TIGR01843 type_I_hlyD type I s 89.7 35 0.00076 42.4 22.7 33 972-1004 202-234 (423)
196 PRK07196 fliI flagellum-specif 89.7 0.38 8.2E-06 59.4 5.0 42 131-172 137-178 (434)
197 cd02023 UMPK Uridine monophosp 89.7 0.22 4.7E-06 55.2 2.7 22 152-173 2-23 (198)
198 PF04111 APG6: Autophagy prote 89.6 4.1 8.9E-05 48.6 13.4 80 972-1051 49-128 (314)
199 KOG2991 Splicing regulator [RN 89.6 40 0.00087 37.9 26.6 82 970-1051 214-300 (330)
200 PF14915 CCDC144C: CCDC144C pr 89.6 47 0.001 38.6 28.4 40 1013-1052 198-237 (305)
201 cd01129 PulE-GspE PulE/GspE Th 89.5 0.35 7.7E-06 56.2 4.4 34 140-174 72-105 (264)
202 PF10473 CENP-F_leu_zip: Leuci 89.5 29 0.00062 36.3 17.5 11 926-936 22-32 (140)
203 PF10174 Cast: RIM-binding pro 89.4 91 0.002 41.7 31.4 30 922-951 393-422 (775)
204 PF00485 PRK: Phosphoribulokin 89.4 0.23 5E-06 54.9 2.7 25 152-176 2-26 (194)
205 PF01583 APS_kinase: Adenylyls 89.4 0.35 7.5E-06 51.4 3.8 29 149-177 2-30 (156)
206 KOG4809 Rab6 GTPase-interactin 89.1 34 0.00074 42.5 20.2 36 882-917 331-366 (654)
207 PRK12402 replication factor C 89.0 0.48 1E-05 57.1 5.2 56 117-174 6-61 (337)
208 TIGR00235 udk uridine kinase. 88.8 0.32 7E-06 54.4 3.3 28 147-174 4-31 (207)
209 PRK01156 chromosome segregatio 88.7 1.2E+02 0.0025 42.1 36.3 21 1323-1343 732-752 (895)
210 PF15397 DUF4618: Domain of un 88.7 51 0.0011 37.9 24.5 37 1013-1049 191-227 (258)
211 cd01130 VirB11-like_ATPase Typ 88.7 0.51 1.1E-05 51.8 4.7 42 126-173 8-49 (186)
212 PF04437 RINT1_TIP1: RINT-1 / 88.6 7.5 0.00016 49.6 15.8 124 1318-1447 353-491 (494)
213 PHA02544 44 clamp loader, smal 88.6 0.44 9.5E-06 57.0 4.5 55 117-173 12-67 (316)
214 TIGR02173 cyt_kin_arch cytidyl 88.5 0.28 6E-06 52.8 2.4 23 151-173 2-24 (171)
215 PF09789 DUF2353: Uncharacteri 88.5 50 0.0011 39.2 20.7 18 923-940 81-98 (319)
216 PF05701 WEMBL: Weak chloropla 88.5 88 0.0019 40.3 33.8 14 1036-1049 337-350 (522)
217 KOG4673 Transcription factor T 88.4 85 0.0018 40.1 39.8 53 889-941 580-632 (961)
218 smart00382 AAA ATPases associa 88.4 0.28 6.2E-06 49.7 2.3 28 149-176 2-29 (148)
219 TIGR03420 DnaA_homol_Hda DnaA 88.4 0.6 1.3E-05 52.8 5.2 38 138-175 27-64 (226)
220 PRK08233 hypothetical protein; 88.4 0.26 5.7E-06 53.5 2.2 25 150-174 4-28 (182)
221 KOG1003 Actin filament-coating 88.4 42 0.00092 36.5 20.0 23 1022-1044 165-187 (205)
222 cd02020 CMPK Cytidine monophos 88.3 0.32 7E-06 50.7 2.7 22 152-173 2-23 (147)
223 PRK05541 adenylylsulfate kinas 88.3 0.33 7.2E-06 52.7 2.9 29 147-175 5-33 (176)
224 PTZ00301 uridine kinase; Provi 88.3 0.32 7E-06 54.5 2.8 23 152-174 6-28 (210)
225 cd02028 UMPK_like Uridine mono 88.1 0.34 7.4E-06 53.0 2.8 24 152-175 2-25 (179)
226 cd02025 PanK Pantothenate kina 88.0 0.34 7.3E-06 54.8 2.7 24 152-175 2-25 (220)
227 KOG4807 F-actin binding protei 88.0 32 0.0007 40.6 18.3 36 1011-1046 445-480 (593)
228 PRK06547 hypothetical protein; 87.9 0.66 1.4E-05 50.3 4.8 28 146-173 12-39 (172)
229 PRK08972 fliI flagellum-specif 87.8 0.87 1.9E-05 56.1 6.2 40 132-171 145-184 (444)
230 PRK07261 topology modulation p 87.8 0.37 8.1E-06 52.2 2.8 23 151-173 2-24 (171)
231 COG1660 Predicted P-loop-conta 87.8 0.3 6.6E-06 55.0 2.1 18 151-168 3-20 (286)
232 PF13851 GAS: Growth-arrest sp 87.7 51 0.0011 36.8 21.6 14 1034-1047 148-161 (201)
233 COG4026 Uncharacterized protei 87.6 5.5 0.00012 43.5 11.2 19 979-997 155-173 (290)
234 PF07724 AAA_2: AAA domain (Cd 87.6 0.44 9.5E-06 51.7 3.2 24 151-174 5-28 (171)
235 PF08614 ATG16: Autophagy prot 87.5 6.6 0.00014 43.5 12.5 73 974-1046 110-182 (194)
236 TIGR02782 TrbB_P P-type conjug 87.5 0.71 1.5E-05 54.7 5.2 27 149-175 132-158 (299)
237 PF01576 Myosin_tail_1: Myosin 87.5 0.17 3.7E-06 68.2 0.0 43 877-919 27-69 (859)
238 cd00227 CPT Chloramphenicol (C 87.3 0.45 9.7E-06 51.7 3.2 25 149-173 2-26 (175)
239 PRK06762 hypothetical protein; 87.3 0.48 1E-05 50.9 3.3 24 150-173 3-26 (166)
240 PRK08118 topology modulation p 87.3 0.43 9.2E-06 51.6 2.9 25 150-174 2-26 (167)
241 PF00910 RNA_helicase: RNA hel 87.3 0.4 8.6E-06 47.7 2.5 25 152-176 1-25 (107)
242 PF10186 Atg14: UV radiation r 87.2 21 0.00045 42.2 17.5 27 1023-1049 120-146 (302)
243 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.1 40 0.00087 34.9 19.9 29 1011-1039 101-129 (132)
244 PRK10929 putative mechanosensi 87.0 66 0.0014 44.8 23.6 21 1031-1051 267-287 (1109)
245 PRK14737 gmk guanylate kinase; 87.0 0.38 8.3E-06 52.9 2.4 25 149-173 4-28 (186)
246 KOG4403 Cell surface glycoprot 87.0 63 0.0014 39.0 20.0 28 696-723 68-98 (575)
247 TIGR01005 eps_transp_fam exopo 86.9 38 0.00083 45.8 21.7 15 833-847 168-182 (754)
248 PF03668 ATP_bind_2: P-loop AT 86.9 0.39 8.5E-06 55.5 2.4 19 150-168 2-20 (284)
249 PF05729 NACHT: NACHT domain 86.8 0.5 1.1E-05 50.1 3.1 27 151-177 2-28 (166)
250 PRK00131 aroK shikimate kinase 86.6 0.53 1.1E-05 50.6 3.2 26 148-173 3-28 (175)
251 cd00071 GMPK Guanosine monopho 86.6 0.37 8.1E-06 50.2 1.9 22 152-173 2-23 (137)
252 PF12846 AAA_10: AAA-like doma 86.6 0.5 1.1E-05 55.6 3.3 29 149-177 1-29 (304)
253 PRK10078 ribose 1,5-bisphospho 86.6 0.39 8.5E-06 52.7 2.2 24 149-172 2-25 (186)
254 PF08826 DMPK_coil: DMPK coile 86.5 8.9 0.00019 34.0 9.9 45 998-1042 15-59 (61)
255 cd02024 NRK1 Nicotinamide ribo 86.5 0.42 9.1E-06 52.5 2.3 22 152-173 2-23 (187)
256 TIGR01420 pilT_fam pilus retra 86.5 0.43 9.4E-06 57.8 2.7 26 149-174 122-147 (343)
257 TIGR01005 eps_transp_fam exopo 86.2 1.4E+02 0.0031 40.4 30.6 25 1021-1045 375-399 (754)
258 PRK14961 DNA polymerase III su 86.2 1 2.3E-05 55.0 5.8 56 117-174 7-63 (363)
259 TIGR01313 therm_gnt_kin carboh 86.1 0.39 8.5E-06 51.4 1.8 22 152-173 1-22 (163)
260 PLN03025 replication factor C 86.0 0.86 1.9E-05 54.7 4.9 56 117-174 4-59 (319)
261 PRK13900 type IV secretion sys 85.9 0.69 1.5E-05 55.6 4.0 30 142-173 155-184 (332)
262 COG2433 Uncharacterized conser 85.9 7.9 0.00017 48.6 12.8 32 1018-1049 477-508 (652)
263 TIGR02928 orc1/cdc6 family rep 85.9 0.73 1.6E-05 56.2 4.3 36 140-175 31-66 (365)
264 PRK08084 DNA replication initi 85.9 1.1 2.3E-05 51.3 5.4 40 136-175 32-71 (235)
265 PF13245 AAA_19: Part of AAA d 85.8 0.89 1.9E-05 42.2 3.8 28 148-175 9-36 (76)
266 KOG4593 Mitotic checkpoint pro 85.8 1.2E+02 0.0027 39.2 30.7 38 1012-1049 279-319 (716)
267 TIGR02524 dot_icm_DotB Dot/Icm 85.7 0.51 1.1E-05 57.3 2.8 28 148-175 133-160 (358)
268 PRK00889 adenylylsulfate kinas 85.7 0.76 1.7E-05 49.8 3.9 29 148-176 3-31 (175)
269 KOG1899 LAR transmembrane tyro 85.6 28 0.00061 43.7 16.9 22 1374-1395 706-727 (861)
270 PF10212 TTKRSYEDQ: Predicted 85.5 78 0.0017 39.8 20.9 9 507-515 110-118 (518)
271 PRK14738 gmk guanylate kinase; 85.5 0.57 1.2E-05 52.4 2.9 26 147-172 11-36 (206)
272 PF01576 Myosin_tail_1: Myosin 85.5 0.25 5.5E-06 66.6 0.0 39 973-1011 349-387 (859)
273 TIGR00554 panK_bact pantothena 85.5 1.2 2.5E-05 52.5 5.5 30 146-175 59-88 (290)
274 COG4608 AppF ABC-type oligopep 85.5 0.52 1.1E-05 53.9 2.5 31 147-177 37-67 (268)
275 COG4026 Uncharacterized protei 85.4 7.4 0.00016 42.5 10.7 45 998-1042 153-197 (290)
276 PF15254 CCDC14: Coiled-coil d 85.4 58 0.0013 42.4 20.0 28 883-910 428-455 (861)
277 cd02027 APSK Adenosine 5'-phos 85.3 0.61 1.3E-05 49.3 2.8 24 152-175 2-25 (149)
278 COG4172 ABC-type uncharacteriz 85.2 0.47 1E-05 56.5 2.0 28 149-176 36-63 (534)
279 TIGR03263 guanyl_kin guanylate 85.1 0.46 1E-05 51.7 1.8 24 150-173 2-25 (180)
280 cd01120 RecA-like_NTPases RecA 84.9 0.68 1.5E-05 48.8 3.0 24 152-175 2-25 (165)
281 TIGR02525 plasmid_TraJ plasmid 84.9 0.6 1.3E-05 56.8 2.8 27 149-175 149-175 (372)
282 PTZ00112 origin recognition co 84.9 1.5 3.3E-05 57.5 6.4 45 132-176 764-808 (1164)
283 COG0572 Udk Uridine kinase [Nu 84.8 0.63 1.4E-05 51.8 2.7 26 149-174 6-33 (218)
284 PRK12377 putative replication 84.8 1.4 2.9E-05 50.8 5.5 45 130-176 84-128 (248)
285 PF05911 DUF869: Plant protein 84.7 84 0.0018 42.0 22.1 66 974-1039 100-165 (769)
286 COG1102 Cmk Cytidylate kinase 84.7 0.69 1.5E-05 48.7 2.7 23 152-174 3-25 (179)
287 PRK06315 type III secretion sy 84.7 1.3 2.8E-05 54.9 5.6 37 137-173 152-188 (442)
288 PRK06217 hypothetical protein; 84.6 0.6 1.3E-05 51.2 2.4 23 151-173 3-25 (183)
289 PRK08472 fliI flagellum-specif 84.6 2.4 5.3E-05 52.4 7.9 41 133-173 141-181 (434)
290 smart00333 TUDOR Tudor domain. 84.5 2.7 5.9E-05 36.3 6.1 51 6-56 2-54 (57)
291 PF07058 Myosin_HC-like: Myosi 84.5 35 0.00075 39.5 15.9 21 978-998 113-133 (351)
292 PRK10751 molybdopterin-guanine 84.5 0.69 1.5E-05 50.1 2.7 27 150-176 7-33 (173)
293 PF00437 T2SE: Type II/IV secr 84.5 0.6 1.3E-05 54.5 2.5 28 148-175 126-153 (270)
294 PRK00440 rfc replication facto 84.4 1.1 2.3E-05 53.5 4.8 55 118-174 9-63 (319)
295 KOG0994 Extracellular matrix g 84.4 1.7E+02 0.0038 39.8 36.7 38 84-121 192-229 (1758)
296 PRK14956 DNA polymerase III su 84.3 1.1 2.4E-05 55.9 4.8 54 118-175 10-66 (484)
297 COG1125 OpuBA ABC-type proline 84.2 0.61 1.3E-05 52.6 2.2 24 151-174 29-52 (309)
298 PRK13851 type IV secretion sys 84.2 0.52 1.1E-05 56.7 1.9 26 149-174 162-187 (344)
299 cd00464 SK Shikimate kinase (S 84.1 0.69 1.5E-05 48.7 2.5 23 151-173 1-23 (154)
300 KOG4677 Golgi integral membran 84.0 1.1E+02 0.0024 37.3 33.7 55 856-910 293-351 (554)
301 PF13671 AAA_33: AAA domain; P 83.9 0.59 1.3E-05 48.5 2.0 23 152-174 2-24 (143)
302 TIGR02902 spore_lonB ATP-depen 83.9 1.1 2.5E-05 57.4 4.8 30 144-173 81-110 (531)
303 KOG0995 Centromere-associated 83.9 1.3E+02 0.0029 38.0 34.1 27 799-825 264-290 (581)
304 PRK00411 cdc6 cell division co 83.7 1.1 2.4E-05 55.3 4.6 35 142-176 48-82 (394)
305 PRK03846 adenylylsulfate kinas 83.5 1.2 2.5E-05 49.6 4.2 32 145-176 20-51 (198)
306 PRK09099 type III secretion sy 83.4 1.9 4.2E-05 53.4 6.4 36 137-172 151-186 (441)
307 PRK06645 DNA polymerase III su 83.4 1.3 2.8E-05 56.2 4.9 56 118-176 13-70 (507)
308 PRK08903 DnaA regulatory inact 83.3 1.6 3.4E-05 49.6 5.2 29 147-175 40-68 (227)
309 KOG4403 Cell surface glycoprot 83.0 57 0.0012 39.3 17.4 33 1020-1052 345-377 (575)
310 COG0563 Adk Adenylate kinase a 83.0 0.84 1.8E-05 49.8 2.7 22 152-173 3-24 (178)
311 PF03205 MobB: Molybdopterin g 83.0 0.96 2.1E-05 47.3 3.0 27 151-177 2-28 (140)
312 PRK14964 DNA polymerase III su 82.9 1.2 2.7E-05 56.0 4.4 57 118-177 5-63 (491)
313 PF03266 NTPase_1: NTPase; In 82.8 0.9 1.9E-05 49.1 2.8 24 152-175 2-25 (168)
314 PRK13894 conjugal transfer ATP 82.8 1.6 3.4E-05 52.2 5.1 27 149-175 148-174 (319)
315 PLN02939 transferase, transfer 82.8 41 0.00088 45.7 18.3 27 1441-1469 852-879 (977)
316 KOG0976 Rho/Rac1-interacting s 82.8 1.7E+02 0.0036 38.3 40.0 30 973-1002 351-380 (1265)
317 PRK07721 fliI flagellum-specif 82.7 3.8 8.3E-05 51.0 8.6 41 133-173 142-182 (438)
318 cd02021 GntK Gluconate kinase 82.6 0.8 1.7E-05 48.2 2.3 22 152-173 2-23 (150)
319 PRK05342 clpX ATP-dependent pr 82.5 1.9 4.1E-05 53.4 5.8 63 111-173 59-132 (412)
320 cd02029 PRK_like Phosphoribulo 82.5 0.96 2.1E-05 52.1 3.0 24 152-175 2-25 (277)
321 COG1123 ATPase components of v 82.5 0.69 1.5E-05 58.1 2.0 29 148-176 34-62 (539)
322 COG1382 GimC Prefoldin, chaper 82.3 33 0.00072 34.7 13.1 40 1010-1049 72-111 (119)
323 PF02367 UPF0079: Uncharacteri 82.3 1.7 3.6E-05 44.4 4.3 27 147-173 13-39 (123)
324 PF06705 SF-assemblin: SF-asse 82.3 1E+02 0.0022 35.5 28.8 10 1037-1046 176-185 (247)
325 PF12325 TMF_TATA_bd: TATA ele 82.2 43 0.00093 34.1 14.1 20 887-906 21-40 (120)
326 COG2884 FtsE Predicted ATPase 82.2 0.88 1.9E-05 49.2 2.3 24 148-171 27-50 (223)
327 PRK13764 ATPase; Provisional 82.1 1 2.2E-05 57.9 3.4 27 149-175 257-283 (602)
328 PRK04182 cytidylate kinase; Pr 82.1 0.86 1.9E-05 49.3 2.4 23 151-173 2-24 (180)
329 TIGR02533 type_II_gspE general 82.0 1.1 2.5E-05 56.5 3.8 35 139-174 233-267 (486)
330 PF07475 Hpr_kinase_C: HPr Ser 82.0 0.96 2.1E-05 48.5 2.5 23 149-171 18-40 (171)
331 PF10146 zf-C4H2: Zinc finger- 81.9 46 0.00099 37.9 15.9 39 972-1010 38-76 (230)
332 PHA00729 NTP-binding motif con 81.9 1.8 3.9E-05 48.8 4.8 28 147-174 15-42 (226)
333 PRK05057 aroK shikimate kinase 81.9 1 2.2E-05 48.8 2.9 25 149-173 4-28 (172)
334 PRK05896 DNA polymerase III su 81.9 1.9 4.1E-05 55.4 5.6 59 116-176 6-65 (605)
335 PF00769 ERM: Ezrin/radixin/mo 81.8 26 0.00056 40.4 14.3 57 992-1048 59-115 (246)
336 PRK09825 idnK D-gluconate kina 81.8 1.1 2.3E-05 48.9 3.0 26 149-174 3-28 (176)
337 TIGR01360 aden_kin_iso1 adenyl 81.7 1 2.2E-05 49.2 2.8 23 151-173 5-27 (188)
338 COG0529 CysC Adenylylsulfate k 81.7 1.8 3.9E-05 46.4 4.4 43 134-177 9-51 (197)
339 PF03215 Rad17: Rad17 cell cyc 81.4 1.3 2.9E-05 56.2 4.0 58 116-173 9-69 (519)
340 COG1124 DppF ABC-type dipeptid 81.4 1.1 2.3E-05 50.5 2.7 29 147-175 31-59 (252)
341 PRK04040 adenylate kinase; Pro 81.3 1 2.2E-05 49.6 2.6 24 150-173 3-26 (188)
342 PRK09111 DNA polymerase III su 81.3 1.2 2.7E-05 57.5 3.7 55 118-176 16-73 (598)
343 KOG1962 B-cell receptor-associ 81.2 10 0.00022 42.2 10.0 39 1014-1052 171-209 (216)
344 PRK13342 recombination factor 81.1 1.6 3.6E-05 54.2 4.7 43 130-173 18-60 (413)
345 KOG2891 Surface glycoprotein [ 81.0 1.1E+02 0.0023 34.9 20.0 28 654-681 107-138 (445)
346 PF07728 AAA_5: AAA domain (dy 80.9 1.1 2.4E-05 46.4 2.7 22 152-173 2-23 (139)
347 PRK07667 uridine kinase; Provi 80.8 1.9 4.1E-05 47.7 4.5 26 150-175 18-43 (193)
348 cd03115 SRP The signal recogni 80.7 1.4 3E-05 47.7 3.4 27 151-177 2-28 (173)
349 PRK12704 phosphodiesterase; Pr 80.7 1.8E+02 0.0039 37.4 22.9 14 1405-1418 415-428 (520)
350 PF13555 AAA_29: P-loop contai 80.7 1.5 3.4E-05 38.9 3.0 20 151-170 25-44 (62)
351 PF14197 Cep57_CLD_2: Centroso 80.7 20 0.00043 32.8 10.1 63 978-1040 3-65 (69)
352 COG1123 ATPase components of v 80.6 0.83 1.8E-05 57.4 1.8 28 148-175 316-343 (539)
353 PRK14957 DNA polymerase III su 80.6 2.1 4.5E-05 54.7 5.4 55 117-175 7-64 (546)
354 PF10498 IFT57: Intra-flagella 80.6 26 0.00056 42.6 14.2 8 638-645 62-69 (359)
355 PF06160 EzrA: Septation ring 80.6 1.9E+02 0.0042 37.6 31.7 6 1034-1039 283-288 (560)
356 COG0802 Predicted ATPase or ki 80.6 2.7 5.9E-05 44.0 5.2 29 147-175 23-51 (149)
357 PF00158 Sigma54_activat: Sigm 80.5 1.8 3.8E-05 46.9 4.0 25 147-171 20-44 (168)
358 TIGR00634 recN DNA repair prot 80.5 1.2E+02 0.0027 39.4 21.6 26 1024-1049 348-373 (563)
359 PF10174 Cast: RIM-binding pro 80.5 2.2E+02 0.0048 38.3 35.2 15 607-621 152-166 (775)
360 PRK06761 hypothetical protein; 80.4 1 2.3E-05 52.5 2.4 26 150-175 4-29 (282)
361 PRK15453 phosphoribulokinase; 80.3 1.2 2.6E-05 51.7 2.8 25 148-172 4-28 (290)
362 TIGR02903 spore_lon_C ATP-depe 80.3 2 4.3E-05 56.1 5.2 36 141-176 167-202 (615)
363 PRK04778 septation ring format 80.3 2E+02 0.0043 37.6 34.4 6 717-722 21-26 (569)
364 KOG4809 Rab6 GTPase-interactin 80.1 1.7E+02 0.0037 36.7 21.2 19 1032-1050 441-459 (654)
365 cd02034 CooC The accessory pro 80.1 1.5 3.3E-05 44.3 3.2 25 152-176 2-26 (116)
366 PRK05416 glmZ(sRNA)-inactivati 80.0 1.1 2.4E-05 52.7 2.5 21 149-169 6-26 (288)
367 KOG0056 Heavy metal exporter H 80.0 1.4 3.1E-05 53.5 3.3 41 148-188 563-603 (790)
368 PRK06893 DNA replication initi 80.0 2.5 5.4E-05 48.1 5.3 39 137-176 28-66 (229)
369 PRK14732 coaE dephospho-CoA ki 79.9 1.4 2.9E-05 49.0 3.0 47 152-203 2-53 (196)
370 PF10234 Cluap1: Clusterin-ass 79.9 54 0.0012 38.0 15.7 14 664-677 2-15 (267)
371 PRK14527 adenylate kinase; Pro 79.9 1.5 3.1E-05 48.5 3.3 28 147-174 4-31 (191)
372 PRK14955 DNA polymerase III su 79.9 2.3 5E-05 52.6 5.4 56 118-175 8-64 (397)
373 KOG4364 Chromatin assembly fac 79.9 60 0.0013 41.4 16.8 14 1507-1520 784-797 (811)
374 TIGR01000 bacteriocin_acc bact 79.6 1.5E+02 0.0033 37.5 21.5 23 1027-1049 289-311 (457)
375 PF05010 TACC: Transforming ac 79.6 1.1E+02 0.0024 34.2 25.6 17 1023-1039 169-185 (207)
376 PRK14974 cell division protein 79.6 2.8 6.1E-05 50.4 5.7 31 147-177 138-168 (336)
377 PF00308 Bac_DnaA: Bacterial d 79.6 2.6 5.7E-05 47.6 5.2 41 136-176 19-61 (219)
378 PRK05688 fliI flagellum-specif 79.5 3.1 6.7E-05 51.7 6.2 41 132-172 151-191 (451)
379 KOG0243 Kinesin-like protein [ 79.5 1.1E+02 0.0024 41.7 20.2 16 309-324 102-117 (1041)
380 COG4172 ABC-type uncharacteriz 79.4 1 2.2E-05 53.8 1.9 30 147-176 311-340 (534)
381 PRK08356 hypothetical protein; 79.3 1.1 2.5E-05 49.5 2.2 22 150-171 6-27 (195)
382 COG1493 HprK Serine kinase of 79.2 1.4 3E-05 51.0 2.8 23 149-171 145-167 (308)
383 PF04665 Pox_A32: Poxvirus A32 79.2 1.3 2.8E-05 50.4 2.6 26 150-175 14-39 (241)
384 TIGR03499 FlhF flagellar biosy 79.2 1.7 3.6E-05 51.2 3.6 45 132-176 169-221 (282)
385 TIGR00176 mobB molybdopterin-g 79.1 1.5 3.4E-05 46.6 3.0 26 152-177 2-27 (155)
386 PF09730 BicD: Microtubule-ass 79.0 2.2E+02 0.0048 37.8 22.6 13 890-902 35-47 (717)
387 PRK15093 antimicrobial peptide 79.0 1.3 2.9E-05 53.2 2.8 27 147-173 31-57 (330)
388 TIGR02868 CydC thiol reductant 79.0 0.98 2.1E-05 58.2 1.8 28 147-174 359-386 (529)
389 PRK00106 hypothetical protein; 78.9 1.2E+02 0.0025 39.1 19.7 126 914-1051 25-154 (535)
390 PRK08116 hypothetical protein; 78.8 3.2 7E-05 48.4 5.8 47 130-176 94-141 (268)
391 KOG0249 LAR-interacting protei 78.8 1.4E+02 0.003 38.7 19.5 6 1330-1335 720-725 (916)
392 PRK08727 hypothetical protein; 78.8 2.7 5.8E-05 48.0 5.0 31 146-176 38-68 (233)
393 PRK04195 replication factor C 78.8 1.9 4.1E-05 54.8 4.2 27 147-173 37-63 (482)
394 TIGR02881 spore_V_K stage V sp 78.8 1.5 3.3E-05 50.9 3.1 31 147-177 40-70 (261)
395 TIGR02788 VirB11 P-type DNA tr 78.7 1.1 2.4E-05 53.4 2.0 25 149-173 144-168 (308)
396 PRK11308 dppF dipeptide transp 78.7 1.4 3E-05 53.0 2.8 27 147-173 39-65 (327)
397 PRK14528 adenylate kinase; Pro 78.6 1.6 3.4E-05 48.1 3.0 24 150-173 2-25 (186)
398 PF05622 HOOK: HOOK protein; 78.5 0.66 1.4E-05 61.8 0.0 25 1012-1036 395-419 (713)
399 PF03193 DUF258: Protein of un 78.5 1.7 3.6E-05 46.5 3.0 24 148-171 34-57 (161)
400 cd03293 ABC_NrtD_SsuB_transpor 78.5 1.4 3E-05 49.7 2.6 26 147-172 28-53 (220)
401 PRK10646 ADP-binding protein; 78.4 3.4 7.4E-05 43.8 5.2 25 149-173 28-52 (153)
402 TIGR03017 EpsF chain length de 78.3 89 0.0019 39.3 19.0 171 881-1051 163-340 (444)
403 TIGR02546 III_secr_ATP type II 78.3 4.5 9.8E-05 50.3 7.2 38 136-173 132-169 (422)
404 cd04508 TUDOR Tudor domains ar 78.3 4.5 9.8E-05 33.6 5.0 43 10-52 1-46 (48)
405 PRK08154 anaerobic benzoate ca 78.3 2.5 5.4E-05 50.5 4.8 48 126-173 106-157 (309)
406 TIGR03319 YmdA_YtgF conserved 78.3 2.1E+02 0.0046 36.8 22.8 153 885-1051 25-178 (514)
407 PRK12608 transcription termina 78.3 2 4.3E-05 52.0 3.9 42 134-175 118-159 (380)
408 TIGR00064 ftsY signal recognit 78.2 3.5 7.6E-05 48.2 5.9 47 131-177 45-100 (272)
409 PF14992 TMCO5: TMCO5 family 78.2 1.4E+02 0.0031 34.7 18.4 23 979-1001 115-137 (280)
410 PF00005 ABC_tran: ABC transpo 78.2 1.4 3.1E-05 45.4 2.4 25 148-172 10-34 (137)
411 PRK06002 fliI flagellum-specif 78.2 1.8 3.8E-05 53.7 3.5 27 145-171 161-187 (450)
412 TIGR00960 3a0501s02 Type II (G 78.1 1.5 3.3E-05 49.3 2.7 27 147-173 27-53 (216)
413 TIGR02673 FtsE cell division A 78.1 1.5 3.3E-05 49.1 2.8 27 147-173 26-52 (214)
414 PF00625 Guanylate_kin: Guanyl 78.1 1.7 3.6E-05 47.6 3.1 25 149-173 2-26 (183)
415 PRK15177 Vi polysaccharide exp 78.1 1.5 3.3E-05 49.2 2.8 27 147-173 11-37 (213)
416 TIGR01166 cbiO cobalt transpor 78.0 1.6 3.4E-05 48.1 2.8 25 147-171 16-40 (190)
417 PRK15079 oligopeptide ABC tran 77.9 1.5 3.2E-05 52.9 2.8 27 147-173 45-71 (331)
418 KOG0243 Kinesin-like protein [ 77.9 1.4E+02 0.0031 40.7 20.5 22 144-165 124-145 (1041)
419 PRK10416 signal recognition pa 77.9 2 4.3E-05 51.4 3.7 31 147-177 112-142 (318)
420 COG2433 Uncharacterized conser 77.8 93 0.002 39.6 17.7 35 972-1006 428-462 (652)
421 COG2805 PilT Tfp pilus assembl 77.8 1.6 3.5E-05 50.4 2.8 78 87-175 70-151 (353)
422 PRK10246 exonuclease subunit S 77.8 2.8E+02 0.006 39.1 25.0 22 149-170 30-51 (1047)
423 PRK09112 DNA polymerase III su 77.8 2.7 5.8E-05 51.0 4.9 40 136-175 31-71 (351)
424 PRK14969 DNA polymerase III su 77.8 2.7 5.9E-05 53.9 5.2 55 117-175 7-64 (527)
425 PRK09473 oppD oligopeptide tra 77.8 1.4 3.1E-05 53.0 2.6 27 147-173 40-66 (330)
426 COG2274 SunT ABC-type bacterio 77.7 1.2 2.5E-05 58.8 1.9 29 147-175 497-525 (709)
427 PRK14963 DNA polymerase III su 77.7 2.3 5E-05 54.1 4.5 56 118-176 6-63 (504)
428 PRK13768 GTPase; Provisional 77.6 1.7 3.8E-05 50.2 3.1 27 151-177 4-30 (253)
429 cd03225 ABC_cobalt_CbiO_domain 77.5 1.7 3.6E-05 48.7 2.8 27 147-173 25-51 (211)
430 cd03260 ABC_PstB_phosphate_tra 77.5 1.7 3.6E-05 49.3 2.9 27 147-173 24-50 (227)
431 cd01983 Fer4_NifH The Fer4_Nif 77.5 2 4.3E-05 40.7 3.0 25 152-176 2-26 (99)
432 TIGR00455 apsK adenylylsulfate 77.5 2.6 5.6E-05 46.1 4.3 29 147-175 16-44 (184)
433 PRK04220 2-phosphoglycerate ki 77.4 2.5 5.3E-05 49.8 4.2 27 147-173 90-116 (301)
434 TIGR02977 phageshock_pspA phag 77.4 1.3E+02 0.0029 34.0 22.5 40 972-1011 98-137 (219)
435 PF13479 AAA_24: AAA domain 77.4 1.4 3E-05 49.6 2.2 23 147-169 1-23 (213)
436 TIGR00678 holB DNA polymerase 77.3 2.9 6.2E-05 45.9 4.6 36 140-175 4-40 (188)
437 cd03259 ABC_Carb_Solutes_like 77.3 1.7 3.6E-05 48.8 2.8 27 147-173 24-50 (213)
438 KOG1962 B-cell receptor-associ 77.3 13 0.00027 41.5 9.3 51 989-1039 160-210 (216)
439 COG4619 ABC-type uncharacteriz 77.3 1.5 3.3E-05 46.4 2.2 24 148-171 28-51 (223)
440 PF09304 Cortex-I_coil: Cortex 77.3 37 0.00081 33.4 11.3 59 975-1033 18-76 (107)
441 cd01124 KaiC KaiC is a circadi 77.2 1.8 3.9E-05 47.2 3.0 26 151-176 1-26 (187)
442 PRK00698 tmk thymidylate kinas 77.2 2.1 4.6E-05 47.4 3.6 28 149-176 3-30 (205)
443 smart00743 Agenet Tudor-like d 77.2 7.8 0.00017 34.1 6.5 51 5-55 1-56 (61)
444 cd03116 MobB Molybdenum is an 77.2 2.1 4.5E-05 45.9 3.3 28 150-177 2-29 (159)
445 TIGR01359 UMP_CMP_kin_fam UMP- 77.2 1.6 3.5E-05 47.5 2.6 23 152-174 2-24 (183)
446 TIGR02680 conserved hypothetic 77.2 3.7E+02 0.0081 39.0 33.1 27 150-176 25-51 (1353)
447 PRK14962 DNA polymerase III su 77.2 3.1 6.8E-05 52.5 5.4 54 118-175 6-62 (472)
448 TIGR01026 fliI_yscN ATPase Fli 77.1 4.1 9E-05 50.8 6.3 40 133-172 147-186 (440)
449 PRK14958 DNA polymerase III su 77.1 3 6.6E-05 53.1 5.3 55 117-175 7-64 (509)
450 PRK11022 dppD dipeptide transp 77.0 1.6 3.5E-05 52.5 2.7 27 147-173 31-57 (326)
451 PF10146 zf-C4H2: Zinc finger- 77.0 37 0.00081 38.6 13.2 39 1013-1051 65-103 (230)
452 TIGR03007 pepcterm_ChnLen poly 77.0 2.2E+02 0.0048 36.3 28.1 26 1019-1044 352-377 (498)
453 COG4088 Predicted nucleotide k 77.0 2.5 5.5E-05 46.2 3.8 102 151-261 3-110 (261)
454 PRK00023 cmk cytidylate kinase 77.0 1.7 3.7E-05 49.3 2.8 26 149-174 4-29 (225)
455 PLN02796 D-glycerate 3-kinase 76.9 1.6 3.6E-05 52.1 2.7 24 151-174 102-125 (347)
456 PRK14950 DNA polymerase III su 76.9 3.1 6.7E-05 54.2 5.4 56 118-176 8-65 (585)
457 PRK06921 hypothetical protein; 76.8 2.3 5E-05 49.5 3.9 28 148-175 116-143 (266)
458 PRK05537 bifunctional sulfate 76.8 1.9 4.2E-05 55.6 3.5 45 129-175 374-418 (568)
459 PRK14959 DNA polymerase III su 76.8 2.7 5.9E-05 54.2 4.8 55 117-175 7-64 (624)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 76.8 1.7 3.8E-05 48.8 2.8 27 147-173 28-54 (218)
461 KOG2129 Uncharacterized conser 76.8 1.8E+02 0.0039 35.2 21.2 21 885-905 204-224 (552)
462 TIGR03608 L_ocin_972_ABC putat 76.7 1.7 3.8E-05 48.3 2.7 26 147-172 22-47 (206)
463 TIGR02880 cbbX_cfxQ probable R 76.7 1.8 3.9E-05 51.0 3.0 28 151-178 60-87 (284)
464 PRK14970 DNA polymerase III su 76.6 3.9 8.5E-05 50.0 6.0 57 117-175 8-65 (367)
465 cd03229 ABC_Class3 This class 76.6 1.9 4E-05 47.0 2.8 26 147-172 24-49 (178)
466 KOG0979 Structural maintenance 76.5 2.9E+02 0.0064 37.5 28.0 38 1452-1490 990-1028(1072)
467 PRK07960 fliI flagellum-specif 76.5 5.4 0.00012 49.5 7.0 41 132-172 158-198 (455)
468 PRK06835 DNA replication prote 76.5 4.1 8.9E-05 48.9 5.9 29 148-176 182-210 (329)
469 PRK13341 recombination factor 76.5 3 6.4E-05 55.3 5.1 36 138-173 41-76 (725)
470 KOG1970 Checkpoint RAD17-RFC c 76.4 3 6.5E-05 51.8 4.7 60 114-173 70-134 (634)
471 PRK10698 phage shock protein P 76.4 1.4E+02 0.0031 33.8 23.1 38 973-1010 99-136 (222)
472 TIGR02640 gas_vesic_GvpN gas v 76.4 3.3 7.2E-05 48.2 5.0 40 130-172 5-44 (262)
473 PF15066 CAGE1: Cancer-associa 76.4 2E+02 0.0044 35.5 23.1 15 399-413 51-65 (527)
474 cd03296 ABC_CysA_sulfate_impor 76.4 1.8 3.9E-05 49.5 2.8 27 147-173 26-52 (239)
475 PRK10869 recombination and rep 76.4 1.3E+02 0.0028 39.2 19.7 183 871-1054 153-373 (553)
476 TIGR03497 FliI_clade2 flagella 76.4 4.8 0.0001 49.8 6.5 35 138-172 126-160 (413)
477 PRK10361 DNA recombination pro 76.3 2.2E+02 0.0048 35.9 26.8 16 1158-1173 277-292 (475)
478 PRK10436 hypothetical protein; 76.3 1.7 3.7E-05 54.5 2.7 27 148-174 217-243 (462)
479 cd02026 PRK Phosphoribulokinas 76.2 1.7 3.8E-05 50.8 2.6 22 152-173 2-23 (273)
480 KOG2072 Translation initiation 76.2 2.7E+02 0.0059 36.9 26.7 33 972-1004 669-701 (988)
481 PRK14531 adenylate kinase; Pro 76.0 2.1 4.5E-05 46.9 3.0 24 150-173 3-26 (183)
482 smart00072 GuKc Guanylate kina 76.0 1.7 3.8E-05 47.6 2.4 23 151-173 4-26 (184)
483 cd03235 ABC_Metallic_Cations A 76.0 1.8 3.8E-05 48.6 2.5 26 147-172 23-48 (213)
484 COG5185 HEC1 Protein involved 75.9 2E+02 0.0044 35.4 25.6 10 604-613 79-88 (622)
485 PF14532 Sigma54_activ_2: Sigm 75.9 1.2 2.6E-05 46.4 1.0 25 147-171 19-43 (138)
486 PRK06936 type III secretion sy 75.9 2.4 5.2E-05 52.5 3.8 41 133-173 146-186 (439)
487 PF14073 Cep57_CLD: Centrosome 75.8 1.2E+02 0.0027 32.8 20.8 168 874-1047 3-173 (178)
488 TIGR03574 selen_PSTK L-seryl-t 75.8 1.9 4.1E-05 49.8 2.7 22 152-173 2-23 (249)
489 PRK05922 type III secretion sy 75.8 2.3 4.9E-05 52.7 3.6 138 9-172 40-180 (434)
490 PRK11176 lipid transporter ATP 75.8 1.6 3.5E-05 56.9 2.5 27 147-173 367-393 (582)
491 PRK05201 hslU ATP-dependent pr 75.7 4.8 0.0001 49.4 6.2 61 113-173 5-74 (443)
492 COG4717 Uncharacterized conser 75.7 2.9E+02 0.0062 37.0 30.1 241 796-1042 552-808 (984)
493 TIGR00382 clpX endopeptidase C 75.7 4.2 9.2E-05 50.2 5.8 66 108-173 62-140 (413)
494 PF01580 FtsK_SpoIIIE: FtsK/Sp 75.7 2 4.4E-05 47.8 2.9 23 152-174 41-63 (205)
495 cd03258 ABC_MetN_methionine_tr 75.6 2 4.2E-05 49.0 2.8 24 147-170 29-52 (233)
496 cd03292 ABC_FtsE_transporter F 75.6 2 4.3E-05 48.2 2.8 24 147-170 25-48 (214)
497 PF11559 ADIP: Afadin- and alp 75.5 49 0.0011 35.0 13.1 83 969-1051 55-137 (151)
498 PRK06305 DNA polymerase III su 75.5 3.9 8.5E-05 51.4 5.6 55 118-173 9-63 (451)
499 PRK03839 putative kinase; Prov 75.4 2 4.4E-05 46.8 2.7 22 152-173 3-24 (180)
500 PF07106 TBPIP: Tat binding pr 75.4 28 0.00061 37.6 11.5 78 973-1050 72-159 (169)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-239 Score=2218.14 Aligned_cols=1369 Identities=34% Similarity=0.532 Sum_probs=1053.2
Q ss_pred CCccccccCcEEEEeCCCCCeEEEEEEEec--CCeEEE--EeCCCcEEEEeCCCccC--CCCCCCCCCCCcccCCCCCCh
Q 000419 2 AAPVNIIVGSHVWVEHPELAWVDGEVFKIS--AEEVHV--HTTNGQTVITNISKVFP--KDTEAPPGGVDDMTKLSYLHE 75 (1530)
Q Consensus 2 ~~~~~~~~g~~vw~~~~~~~w~~~~v~~~~--~~~~~~--~~~~g~~~~~~~~~~~~--~~~~~~~~~~~Dl~~l~~l~e 75 (1530)
|+...+.+|..||+||.+.+|+.|.|.+.+ ++.++. ...+|....++...+-. .++| ..+++||||.|+||||
T Consensus 1 ~~~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P-~~~~vdDLt~LSyLNE 79 (1463)
T COG5022 1 MSTTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLP-KFDGVDDLTELSYLNE 79 (1463)
T ss_pred CCccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCc-cccCchhhhhhhccCc
Confidence 345678999999999999999999999753 333322 22455444444443221 1122 4589999999999999
Q ss_pred HHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEec
Q 000419 76 PGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVS 155 (1530)
Q Consensus 76 ~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiis 155 (1530)
|+|||||++||.+++||||+|.||||||||+.|| ||++++|+.|++++..+++|||||||++||+.|...++|||||||
T Consensus 80 psVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiIS 158 (1463)
T COG5022 80 PAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIIS 158 (1463)
T ss_pred HHHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEEEcCCCccccceee
Q 000419 156 GESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVR 235 (1530)
Q Consensus 156 GeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~ 235 (1530)
|||||||||+||+||+|||++++.++....+||++||++||||||||||||+|||||||||||++|.||.+|.|+||+|+
T Consensus 159 GESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~ 238 (1463)
T COG5022 159 GESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIE 238 (1463)
T ss_pred cCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhh
Confidence 99999999999999999999998776666789999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccCCCCccceeehhcccC-ChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhcCCCHH
Q 000419 236 TYLLERSRVCQISDPERNYHCFYLLCAA-PPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEE 314 (1530)
Q Consensus 236 ~yLLEksRv~~q~~~ErnfHiFYql~~~-~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~ 314 (1530)
||||||||||+|+.+|||||||||||++ ++..++.+++..|++|.||++|+|..++|+||+++|..|+.||++|||+.+
T Consensus 239 ~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~e 318 (1463)
T COG5022 239 TYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEE 318 (1463)
T ss_pred hhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChH
Confidence 9999999999999999999999999995 555556667789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCCceEeccCChhhHh
Q 000419 315 EQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAV 394 (1530)
Q Consensus 315 ~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~ 394 (1530)
+|..||++||||||||||+|..+++ +.+.+.+. +.++.+|.|||||+..|.+||++|.|.+++|.|.+|+|..||.
T Consensus 319 eq~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~ 394 (1463)
T COG5022 319 EQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQAL 394 (1463)
T ss_pred HHHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHH
Confidence 9999999999999999999998764 44444443 3699999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHHhHhhHhhhhhhHHHh
Q 000419 395 GSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEY 474 (1530)
Q Consensus 395 ~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~~f~~~vf~~eq~~y 474 (1530)
.+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||
T Consensus 395 ~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY 474 (1463)
T COG5022 395 AIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEY 474 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccccccChHHHHHHhhc-CCCcccccchhhhcCCCCchHHHHHHHHHHhc--CCCCccCCCCCCCCeEEEecc
Q 000419 475 TKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKPKLSRTSFTISHYA 551 (1530)
Q Consensus 475 ~~Egi~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~~~~p~~~~~~F~i~Hya 551 (1530)
.+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|+|++|.+||++.+. +++.|.+||+....|+|+|||
T Consensus 475 ~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYA 554 (1463)
T COG5022 475 VKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYA 554 (1463)
T ss_pred HHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeec
Confidence 999999999999999999999997 25699999999999999999999999999986 568899999999999999999
Q ss_pred ceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHHHHHHHHHHHHHHccCCCEEEEec
Q 000419 552 GEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCV 631 (1530)
Q Consensus 552 g~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCI 631 (1530)
|+|+|+++||++||+|++++++++|+.+|+|+|++.||+...... +.++++|+|++||.||.+||.+|++|+|||||||
T Consensus 555 gDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCI 633 (1463)
T COG5022 555 GDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCI 633 (1463)
T ss_pred ccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEee
Confidence 999999999999999999999999999999999999999544333 3468899999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCC-----CCchHHHHHHHHHhcC
Q 000419 632 KPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-----NYDDKVACEKILDKMG 706 (1530)
Q Consensus 632 kPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-----~~~~~~~~~~il~~~~ 706 (1530)
|||..|+|+.||+.+|++|||||||+|+|||+|+|||+||+|++|+.||++|.|..... ..+.+.+|+.||..+.
T Consensus 634 kPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~ 713 (1463)
T COG5022 634 KPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELV 713 (1463)
T ss_pred CCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999974322 2357899999999976
Q ss_pred CC--cceecccchhhchhhHHHHHHHhhhhchhHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000419 707 LK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRRE 784 (1530)
Q Consensus 707 ~~--~~~iGkTkVF~r~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r~~ 784 (1530)
.+ .||+|+||||||+|+++.||.+|...++.+++.||++|||++.|++|.+..+.+..+|...+|+..|+++..-...
T Consensus 714 id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~ 793 (1463)
T COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKW 793 (1463)
T ss_pred CChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHH
Confidence 65 6999999999999999999999999999999999999999999999999999999999999999999887766666
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000419 785 AAALKIQKNFHSYTARTSYLTARSSAIQLQ-TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQC 863 (1530)
Q Consensus 785 ~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQ-s~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQ~ 863 (1530)
.+++++|+.||....|+.|......++.+| ..+|....+.........++++.+|+.||.+..+++|..+.+.++.+|+
T Consensus 794 ~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~ 873 (1463)
T COG5022 794 RLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQS 873 (1463)
T ss_pred HhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHH
Confidence 789999999999999999999999999999 5566666666566667778999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 864 GWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFR 943 (1530)
Q Consensus 864 ~~R~~~arrel~~Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~ 943 (1530)
.+|...|++++..++.+.+++..+......++.++.++...++.......+.. ......++..+...+
T Consensus 874 ~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~k---~e~~a~lk~~l~~~d--------- 941 (1463)
T COG5022 874 AQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFK---TELIARLKKLLNNID--------- 941 (1463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHHH---HHHHHHHHHHhhccc---------
Confidence 99999999999999999999999999999999999988887664211111110 011112211111100
Q ss_pred HHHHHHHHHHHHHhCCccccccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000419 944 ILKEQEAARKAIEEAPPIVKETPVIVH-DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA---EVRNTELVKKLED 1019 (1530)
Q Consensus 944 l~~e~e~l~~~~eel~~~l~e~~~l~~-~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~---e~~~~~l~~~L~~ 1019 (1530)
+++....+. ...++.++..+...+++...+...-+.+.+....+. ..+.....+.+..
T Consensus 942 ------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~ 1003 (1463)
T COG5022 942 ------------------LEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAE 1003 (1463)
T ss_pred ------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHH
Confidence 000000000 000222333333333332222222222211111111 1111111111211
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHhhcCCCccccccCCchhhcccCCCCCCCCCCCccccCccccccc
Q 000419 1020 TEEKVGQLQESMQRLEEK---LCNSESENQVIRQQALAMSPTGKSLSARPKTLVIQRTPENGNVQNGEMKVTPDVTLAVT 1096 (1530)
Q Consensus 1020 ~e~~~~~L~~~~~~Le~~---i~eLe~e~~~lkq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1096 (1530)
.......++.....++.. +..+.......... ...++...+-..+.. . .............+.+
T Consensus 1004 ~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~-----------~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~l~ 1070 (1463)
T COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQSASKIISSE-----------STELSILKPLQKLKG-L-LLLENNQLQARYKALK 1070 (1463)
T ss_pred HHhhhhhhhhhhhhcccccchhhhhhhhhhhhccc-----------hhhhhccCcccchhh-h-hhHHHHHhhhhHhhhh
Confidence 111111122222222211 22222211111000 000000000000000 0 0000000000000000
Q ss_pred cCCCCCcccccccchhhHhhhcHHHHHHhhc-cCCCccCC-ccchHHH-HHHHHhhhcc-cchhhHHHHHHHHHHHHHHh
Q 000419 1097 SAREPESEEKPQKSLNEKQQENQDLLIKCVS-QNLGFSRS-KPVAASV-IYKCLLHWRS-FEVERTTVFDRIIQTIASAI 1172 (1530)
Q Consensus 1097 ~~~~~~~~~~~~~~~~e~~~e~~d~li~~~~-~~~g~~~~-kp~pA~i-lf~c~r~~~~-~~~~~~~ll~~ii~~I~~~v 1172 (1530)
...+.. ..-..+....+....+.+.+. +++...+. -+.||.. -+....+|++ ...+...++...+..++.+.
T Consensus 1071 ~~r~~~----~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~ 1146 (1463)
T COG5022 1071 LRRENS----LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF 1146 (1463)
T ss_pred hcCccc----chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchh
Confidence 000000 000011122233333444333 33333221 1224544 3444446665 44455666666666666555
Q ss_pred hh---cCCcccceehHHHHHHHHHHHHHhhhhcCCCCCCccccccccchhhhcccccccCCCCCCCcccccCCCcCcchh
Q 000419 1173 EV---QDNNDVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDD 1249 (1530)
Q Consensus 1173 ~~---~~d~~~layWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e 1249 (1530)
.. .+-...+.||.+|...+++.---. ...+.+.... ++ + +....+..++
T Consensus 1147 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~----------------~---d~~~~~s~s~ 1198 (1463)
T COG5022 1147 QKLSVLQLELDGLFWEANLEALPSPPPFA-------ALSEKRLYQS--AL----------------Y---DEKSKLSSSE 1198 (1463)
T ss_pred ccccchhccccccccccccccCCCCCchh-------hcchhhhhHh--hh----------------h---cccccccHHH
Confidence 42 233446789999999876311000 0000000000 00 0 0000001112
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh-hcC-CCCcccccccCCCcchhHhhhhhhHhHHHHHH
Q 000419 1250 LRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLC-IQA-PRTSRASLVKGRSQANAVAQQALIAHWQSIVK 1327 (1530)
Q Consensus 1250 ~~~v~~~~~~~~fkqqL~~l~~~iy~~l~~~i~~~l~~~L~~~-i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 1327 (1530)
+ ...+..+..+..++|..|.... ++.+.+... ++. .....+++. .++..+..++..+.+.++.
T Consensus 1199 v---------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~ 1263 (1463)
T COG5022 1199 V---------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKFDTPASMSNEKLLS 1263 (1463)
T ss_pred H---------HHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcccCcccCcHHHHHH
Confidence 1 2235678888888898887665 233332211 100 001111110 0112233345567789999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCcccchhhHHHhchhHHHHHHhhcCcccccchHHHhH
Q 000419 1328 SLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELK 1407 (1530)
Q Consensus 1328 ~L~~~~~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~ 1407 (1530)
+++++.+.++.+.+.+.+..-.++++.-++|+.+||.|..|..-..|+.|-++.+|.+.+++||+..+ ...+..+|+
T Consensus 1264 ~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~ 1340 (1463)
T COG5022 1264 LLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEELE 1340 (1463)
T ss_pred HHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 566778999
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHccCCCCCHHHHHHHHhcCcCCCCCCCCCCHHHHHHHHhhhh
Q 000419 1408 HIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMT 1472 (1530)
Q Consensus 1408 ~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ln~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~l~~~~~ 1472 (1530)
+++|+++.+++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++.++|.....
T Consensus 1341 ~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1341 ELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred HHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 9999999999998777777777 5999999999999999999999998 5999999977654444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=5.2e-204 Score=1923.37 Aligned_cols=769 Identities=36% Similarity=0.577 Sum_probs=715.7
Q ss_pred ccccccCcEEEE-------eCCCCCeEEEEEE-EecCCeEEEEe---CCCcEEEEeCCCccCCCCCCCCCCCCcccCCCC
Q 000419 4 PVNIIVGSHVWV-------EHPELAWVDGEVF-KISAEEVHVHT---TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSY 72 (1530)
Q Consensus 4 ~~~~~~g~~vw~-------~~~~~~w~~~~v~-~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~l~~ 72 (1530)
..++.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+|+..+.+++||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 345678999998 6789999999999 78899888874 578999999999999998776789999999999
Q ss_pred CChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhcc-CcCCCCchHHHHHHHHHHHHHhcCCCeE
Q 000419 73 LHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGA-QFGELSPHVFAIADVAYRAMINEGKSNS 151 (1530)
Q Consensus 73 l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~-~~~~~~PHi~ava~~Ay~~m~~~~~~Qs 151 (1530)
||||+|||||+.||..+.||||+|++|||||||+++| +|++++|+.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999997 9999999999985 5789999999999999999999999999
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEEEcCCCcccc
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISG 231 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~g 231 (1530)
|||||||||||||+||+||+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999987532 2357999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhcC
Q 000419 232 AAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVG 310 (1530)
Q Consensus 232 a~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg 310 (1530)
|+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++|+||+++|..|+.||++||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCeeEEecCC---CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCCceEecc
Q 000419 311 ISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRT 387 (1530)
Q Consensus 311 ~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~ 387 (1530)
|+++++.+||+|||||||||||+|.+... .+++.+.+. +...+..||+|||||+++|.++||+|++.++++.+++|
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 345555442 34579999999999999999999999999999999999
Q ss_pred CChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHHhHhhHhhh
Q 000419 388 LDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVF 467 (1530)
Q Consensus 388 l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~~f~~~vf 467 (1530)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766778999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccCCCC-CCCCeE
Q 000419 468 KMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL-SRTSFT 546 (1530)
Q Consensus 468 ~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~-~~~~F~ 546 (1530)
+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++|++|.+|+. ....|+
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~ 581 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFV 581 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 467999
Q ss_pred EEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHHHHHHHHHHHHHHccCCCE
Q 000419 547 ISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPH 626 (1530)
Q Consensus 547 i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h 626 (1530)
|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+||
T Consensus 582 I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ph 661 (821)
T PTZ00014 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPH 661 (821)
T ss_pred EEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998754333344466899999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCC-CCchHHHHHHHHHhc
Q 000419 627 YIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKVACEKILDKM 705 (1530)
Q Consensus 627 ~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~ 705 (1530)
||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+..... ..|+++.|+.||+.+
T Consensus 662 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~ 741 (821)
T PTZ00014 662 FIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERS 741 (821)
T ss_pred EEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999998765432 358899999999998
Q ss_pred CC--CcceecccchhhchhhHHHHHHHhhhhch---hHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000419 706 GL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKL 777 (1530)
Q Consensus 706 ~~--~~~~iGkTkVF~r~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~ 777 (1530)
++ +.|++|+||||||++++..||..|.+++. .++..||++||+|++|++|++++.+++.||++||||++++.
T Consensus 742 ~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 742 GLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999999999999998887754 57888999999999999998888888888888888887654
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5e-189 Score=1768.23 Aligned_cols=674 Identities=87% Similarity=1.337 Sum_probs=648.2
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000419 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1530)
Q Consensus 62 ~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~ 141 (1530)
+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+++|+||++++|..|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEE
Q 000419 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l 221 (1530)
+|.+.++||||||||||||||||++|++|+|||.+++..+..+.+|+++|+++||||||||||||+|||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555557899999999999999999999999999999999999
Q ss_pred EEcCCCccccceeeeeccccccccccCCCCccceeehhcccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000419 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1530)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
+||.+|.|+||+|.+|||||||||.|++||||||||||||++++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000419 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
++.||+.|||+++++..||+|||||||||||+|.+..+.|++.+.+..+...+..||+||||++++|.++|++|++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666655456789999999999999999999999999999
Q ss_pred ceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHHhH
Q 000419 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 461 (1530)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~~ 461 (1530)
+.+++|+++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred hhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccCCCCC
Q 000419 462 FNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS 541 (1530)
Q Consensus 462 f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~ 541 (1530)
||++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHHHHHHHHHHHHHHc
Q 000419 542 RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1530)
Q Consensus 542 ~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~ 621 (1530)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665545556778999999999999999999
Q ss_pred cCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCCCCchHHHHHHH
Q 000419 622 STEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKI 701 (1530)
Q Consensus 622 ~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~i 701 (1530)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......+++..|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766566889999999
Q ss_pred HHhcCCCcceecccchhhchhhHHHHHHHhhhhc
Q 000419 702 LDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1530)
Q Consensus 702 l~~~~~~~~~iGkTkVF~r~~~~~~Le~~r~~~l 735 (1530)
|+.++.+.|++|+||||||++++..||..|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.3e-186 Score=1822.67 Aligned_cols=1034 Identities=37% Similarity=0.593 Sum_probs=839.6
Q ss_pred cccccCcEEEEeCCCCCeEEEEEEEecCCeEEEEeCCCcEEE-EeCCCccCCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 000419 5 VNIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVI-TNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLA 83 (1530)
Q Consensus 5 ~~~~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~l~~l~e~~vL~~L~ 83 (1530)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ |+.++++|+||| .++.++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456677899999999999999999987777999998887766 999999999976 567999999999999999999999
Q ss_pred HHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCch
Q 000419 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKT 163 (1530)
Q Consensus 84 ~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKT 163 (1530)
.||.++.||||+|.+||+||||+++| ||+++++++|+|+.+.++||||||||+.||+.|..++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCCC---CccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEEEcCCCccccceeeeeccc
Q 000419 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLE 240 (1530)
Q Consensus 164 e~~k~~~~yla~~~~~~~~~---~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLE 240 (1530)
|+||.||+|||++++++... +.+++++|+++||||||||||+|++|||||||||||+|+||..|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 258999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccceeehhccc-CChhHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHHHHhhhhhcCCCHHHHHH
Q 000419 241 RSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGD-PKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEEQDA 318 (1530)
Q Consensus 241 ksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~-~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1530)
||||++|+++|||||||||+++ +++..+..|.|.+ +.+|.|+.++.. .+||+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888999999986 899999999887 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCCceEeccCChhhHhhhHH
Q 000419 319 IFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVGSRD 398 (1530)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~rd 398 (1530)
||+|+||||||||+.|......+.+.+.+ ......+|.||||+...|.++++++.+.++++.+.+..+.+|+..+-.
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~---~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDN---TEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCC---chHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 99999999999999999865445554443 346899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHHhHhhHhhhhhhHHHhhhcC
Q 000419 399 ALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEE 478 (1530)
Q Consensus 399 alak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~~f~~~vf~~eq~~y~~Eg 478 (1530)
||||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877778999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHh-cCCCCccCCC--CCCCCeEEEecccee
Q 000419 479 INWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK--LSRTSFTISHYAGEV 554 (1530)
Q Consensus 479 i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p~--~~~~~F~i~Hyag~V 554 (1530)
|+|.+|+| .|-|||||||+ +|+||+++|||||++|++||.+|+.||...| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 68999999999 5669999999999999999999999999999 8999999997 456899999999999
Q ss_pred EeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCC-----------CcCCCCCCccchHHHHHHHHHHHHHHccC
Q 000419 555 TYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNST 623 (1530)
Q Consensus 555 ~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t 623 (1530)
.|+++||++||+|++++.++++|..|++++|+.||++... ..+|++.|.||+..+|.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987211 13345577899999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCC-CCCchHHHHHHHH
Q 000419 624 EPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDDKVACEKIL 702 (1530)
Q Consensus 624 ~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il 702 (1530)
+|||||||.||..|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.+.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955554333 3467799999999
Q ss_pred HhcCC--CcceecccchhhchhhHHHHHHHhhhhchhHHHHHHHHHhhHHHHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q 000419 703 DKMGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIAL---RKAAIVLQSYWRGILACKL 777 (1530)
Q Consensus 703 ~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~---r~a~i~IQ~~~Rg~laRk~ 777 (1530)
..+.. .-|++|.||||||+|+++.||..|...+....+.+|+.+|||++|+.|.+. +.|+.+||+.+|.|+..+.
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 98754 469999999999999999999999999999999999999999999998876 4689999999999999999
Q ss_pred HHHHhhhHHH-HHHHHHHHHHHHHHhhhHhhhHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 000419 778 YEQLRREAAA-LKIQKNFHSYTARTSYLTARSSAIQLQTGL-RAMVARNEFRF----RKQTKAAIIIEAYLRRHTACSYY 851 (1530)
Q Consensus 778 ~~~~r~~~AA-~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~-Rg~laRk~~~~----lr~~~aAi~IQ~~~R~~~~rr~~ 851 (1530)
|.|++....+ ..|++.-+.-..++....+. .+.... +....|+++.. +..+...+..|-..+....+..-
T Consensus 818 w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~----~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~ae 893 (1930)
T KOG0161|consen 818 WPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQ----KLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAE 893 (1930)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888853221 23444333333333322222 111111 11112222221 22233333334333322222211
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 852 KSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQ 931 (1530)
Q Consensus 852 ~~~~~a~~~iQ~~~R~~~arrel~~Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~ 931 (1530)
..........+.. ....+..-.++..+++....+...+.+++.++.+++..+++.+..+.+++.++.....+++...+
T Consensus 894 e~~~~~~~~k~~l--e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~ 971 (1930)
T KOG0161|consen 894 ELLERLRAEKQEL--EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEE 971 (1930)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000000000 00011111133344555556666667777777777777777666666666655432222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------Cccccccch-hhhhHHHHHHHHHHH
Q 000419 932 AMQLQVEEANFRILKEQEAARKAIEEA----------------------------PPIVKETPV-IVHDTEKIESLTAEV 982 (1530)
Q Consensus 932 eLe~~lee~~~~l~~e~e~l~~~~eel----------------------------~~~l~e~~~-l~~~~~~~~~Le~e~ 982 (1530)
++.. +++..+.+.++++.++..+.++ +..+++... ....+....+++.++
T Consensus 972 e~~~-~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 972 EINS-LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2333333344433333333333 211111110 111122223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 983 DSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 983 ~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
..+++.+..+....+++..++...+.++..+..++.++...+.++++.+.+|+..+.+++++++..+...
T Consensus 1051 ~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555666666667778888889999999999999999999999999998888664
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=5e-185 Score=1700.54 Aligned_cols=752 Identities=64% Similarity=1.011 Sum_probs=722.2
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
|+.|+|||+.|+|||||+|||||+.||..+.||||+|.+|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34578999999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhcccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1530)
+|+||.+|+|+||.|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+++|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995449999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000419 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1530)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++...++ ++..+|+|||++.+.|..||+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776555554443 799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhccccc-CCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHH
Q 000419 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQ-DPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~L 458 (1530)
+++.|++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||.|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 445589999999999999999999999999999999
Q ss_pred HhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccCC
Q 000419 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1530)
Q Consensus 459 q~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1530)
||+||+|||+.||++|.+|||+|+.|+|.||++|+++|++ |.||++||||+|++|.++|++|..||++.+.+|+.|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHHHHHHHHHHHH
Q 000419 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1530)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~ 618 (1530)
+++++.|+|.||||+|+|++.|||+||||+|++++++++..|+++|+..+|++....+.+.++++||+++|+.+|..||.
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666655566889999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCCCCchHHHH
Q 000419 619 TLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVAC 698 (1530)
Q Consensus 619 ~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1530)
+|++|+||||||||||+.+.|+.|+..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|+...|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHHHhcCCCcceecccchhhchhhHHHHHHHhhhhchhHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000419 699 EKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLY 778 (1530)
Q Consensus 699 ~~il~~~~~~~~~iGkTkVF~r~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~ 778 (1530)
+.+|+.++.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+.+||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q 000419 779 EQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1530)
Q Consensus 779 ~~~r~~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk 824 (1530)
..+ +..||+.||+.||+|..|++|..++.+++.+|+.+|++++|.
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 678999999999999999999999999999999999999987
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.1e-184 Score=1739.71 Aligned_cols=664 Identities=53% Similarity=0.868 Sum_probs=626.1
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000419 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCC--CCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEE
Q 000419 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~--~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~ 220 (1530)
|...++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||+|||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 224689999999999999999999999999999999999
Q ss_pred EEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000419 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1530)
Q Consensus 221 l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1530)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000419 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1530)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
..|+.||+.|||+++++.+||+|||||||||||+|.+.++ +.+.+.. +...++.||+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 3322221 234799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccC---CCCCeEEeeecccCccCCCCCCHHHHHhhhhhH
Q 000419 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD---PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE 456 (1530)
++|.+++|++++||.++||||||+||++||+|||.+||.+|.++ .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhc--CCCC
Q 000419 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKR 534 (1530)
Q Consensus 457 ~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 534 (1530)
+|||+||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.++ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred ccCCCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCc-----------------C
Q 000419 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------------S 597 (1530)
Q Consensus 535 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~-----------------~ 597 (1530)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+ .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532111 0
Q ss_pred CCCCCccchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHH
Q 000419 598 KSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1530)
Q Consensus 598 ~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1530)
+..+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 11256799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
.||++|++.......|++..|+.||+.+.. +.|++|+||||||++++..||..|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456889999999999874 589999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.8e-184 Score=1727.67 Aligned_cols=661 Identities=46% Similarity=0.773 Sum_probs=625.5
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000419 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEE
Q 000419 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1530)
|.+.++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred EcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000419 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC--CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000419 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
++.||+.|||+++++.+||+|||||||||||+|.+.+. .+.+.+.+ ...++.||+||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 24455554 35799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccC-CCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHH
Q 000419 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~L 458 (1530)
+++.+++|++++||.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccCC
Q 000419 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1530)
Q Consensus 459 q~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1530)
||+||+|||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|+|+|++|++|+++.+++|+.|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCc-CCCCCCccchHHHHHHHHHH
Q 000419 539 KL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1530)
Q Consensus 539 ~~-~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 616 (1530)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.+|+...... ..+.+.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754322 22336689999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCC--CCch
Q 000419 617 METLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG--NYDD 694 (1530)
Q Consensus 617 ~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1530)
|++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3467
Q ss_pred HHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 695 KVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 695 ~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
+..|+.|++.+.. +.|++|+||||||++++..||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998764 589999999999999999999865
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.1e-184 Score=1734.05 Aligned_cols=667 Identities=46% Similarity=0.784 Sum_probs=626.7
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++|+.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCC------CCCccHHHHHHhhchHHHhhcCccccCCCCCC
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~------~~~~~ie~~il~snpilEaFGNAkT~rN~NSS 213 (1530)
|++|...++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred cccceEEEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCC-CCCccccCCCccccC
Q 000419 214 RFGKFVELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDP-KSFHYLNQSNCYALD 291 (1530)
Q Consensus 214 RfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~-~~~~yl~~~~~~~~~ 291 (1530)
|||||++|+||.+|+|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78999999999876 99999999886 478
Q ss_pred CCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHH
Q 000419 292 GVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDA 371 (1530)
Q Consensus 292 ~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1530)
++||+++|.+++.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..+..||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999998644455555543 47999999999999999999
Q ss_pred HhhceeeeCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHh
Q 000419 372 LINRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1530)
Q Consensus 372 l~~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlci 451 (1530)
||+|++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887778999999999999999999999999
Q ss_pred hhhhHHHHhHhhHhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhc
Q 000419 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK 530 (1530)
Q Consensus 452 NyaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~ 530 (1530)
|||||+|||+||+|||+.||++|.+|||+|++|+| .||++|||||+++|.|||++|||||++|+|||++|++|+++.++
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCc--cCCCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCc----------CC
Q 000419 531 SNKRF--IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES----------SK 598 (1530)
Q Consensus 531 ~~~~~--~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~----------~~ 598 (1530)
+++.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 4455567899999999999999999999999999999999999999999999998642211 11
Q ss_pred CCCCccchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHH
Q 000419 599 SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLH 678 (1530)
Q Consensus 599 ~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ 678 (1530)
.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|++|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCC-CCCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 679 RFGVLAPDVL-DGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
||++|++... ....|.++.|+.||+.+++ +.|++|+||||||++++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998763 2345789999999999876 489999999999999999999876
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.5e-180 Score=1551.69 Aligned_cols=791 Identities=40% Similarity=0.672 Sum_probs=710.2
Q ss_pred ccCcEEEEeCCCCCeEEEEEEEecCCeEEEEe--CCCcEEEEeCCCccCCCCCCCCCCCCcccCCCCCChHHHHHHHHHH
Q 000419 8 IVGSHVWVEHPELAWVDGEVFKISAEEVHVHT--TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAAR 85 (1530)
Q Consensus 8 ~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~l~~l~e~~vL~~L~~R 85 (1530)
.-|..||++|+.++|+.|.|+++..+.+++.. ..|.+++.-.+++++... .++..+||-|.|-||||+++|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~ee-D~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEE-DSPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhcccccc-ccccccccccceeeccHHHHhhhhhhh
Confidence 45899999999999999999999988888864 357778888888888753 356889999999999999999999999
Q ss_pred hccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000419 86 YELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTET 165 (1530)
Q Consensus 86 y~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1530)
|..|.||||+.+||||||||..++.+|+++.|..|+|+..|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEEEcCCCccccceeeeecccccccc
Q 000419 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVC 245 (1530)
Q Consensus 166 ~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~ 245 (1530)
+|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-+.+|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986554 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCc--------------------------cccCCCCcHHH
Q 000419 246 QISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNC--------------------------YALDGVDDTEE 298 (1530)
Q Consensus 246 ~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~--------------------------~~~~~~dd~~~ 298 (1530)
.|+.+|||||||||||| ++++.+++|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8999999999999999999985411 11223789999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC--CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhce
Q 000419 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRV 376 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1530)
|..+..||+.+|++++|...||+++|||||||||+|++..+ ..+|.+.+ .+...|..+|+|||+|+++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34666665 4567899999999999999999999999
Q ss_pred eeeC-----CceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHh
Q 000419 377 MVTP-----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1530)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlci 451 (1530)
+.+. |..|.+||.+.+|..+||||||++|++||||||.+||+++... .+..|||||||.|||.|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 8753 4578999999999999999999999999999999999999754 468899999999999999999999999
Q ss_pred hhhhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcC
Q 000419 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1530)
Q Consensus 452 NyaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 531 (1530)
||+|||||++||+.+++.||+.|++||++...|+|.|||+||+|||.|..|||+|||||.++|+.+++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCC----------CCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCC--C
Q 000419 532 NKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK--S 599 (1530)
Q Consensus 532 ~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~--~ 599 (1530)
|-+...|+.+ ...|.|+||||.|+|++..|+|||.|.+...+..|+..|+++|+.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888777643 357999999999999999999999999999999999999999999999985443322 2
Q ss_pred C--CCccchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHH
Q 000419 600 S--KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1530)
Q Consensus 600 ~--~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1530)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|+.||...++.||.|+|+...++++..|||+|..|.+.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCchHHHHHHHHHhcCCC--cceecccchhhchhhHHHHHHHhhhhchhHHHHHHHHHhhHHHHHHH
Q 000419 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEF 755 (1530)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVF~r~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~ 755 (1530)
.-|.-.+|+.+. ..|++-.|+.+..++|++ +|++|.||||||+|..+..+++........+..|++ +..|+.|.++
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 999988887665 368999999999999985 799999999999999999999877666666655654 6778888888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHH
Q 000419 756 IALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQT 815 (1530)
Q Consensus 756 ~~~r~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs 815 (1530)
.+...++..+-.. ..+.. -|..+++++|+..|||++|+++......+.++-+
T Consensus 793 kk~q~~a~sVIKL----kNkI~----yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 793 KKSQYGALSVIKL----KNKII----YRAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHhhhhhhheeeh----hhHHH----HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 7765543322111 01111 1345678899999999999988765544444433
No 10
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-182 Score=1574.70 Aligned_cols=728 Identities=40% Similarity=0.700 Sum_probs=675.5
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000419 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1530)
Q Consensus 61 ~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay 140 (1530)
..|++|++-|+.+.|++++.||+.||..+.||||+|.|||+||||+.++ ||+++.|++|+|....+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 3689999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCC-CCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~-~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+++|+|||||||||||||.||||||||||||
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999865432 1246778999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCC-CCCCCccccCCCccccCCCCcHH
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLG-DPKSFHYLNQSNCYALDGVDDTE 297 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~-~~~~~~yl~~~~~~~~~~~dd~~ 297 (1530)
.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.+...|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999996 78999999998 88999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000419 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 377 (1530)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1530)
+|..++.||.++||+++|+..+|+|+|||||||||+|.+++ |++.+... ..+..+|+||++..+.|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854 44444432 47999999999999999999999999
Q ss_pred eeCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccC-----CCCCeEEeeecccCccCCCCCCHHHHHhh
Q 000419 378 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-----PNSRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1530)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfEQlciN 452 (1530)
.+++|.+.+++++.||..+||||||++|+|||+|||.+||++|... ......||+|||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999643 12358999999999999999999999999
Q ss_pred hhhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCC-CchHHHHHHHHHHhcC
Q 000419 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFAQKLYQTFKS 531 (1530)
Q Consensus 453 yaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~~ 531 (1530)
|+||||||.|++-++|.|||||++|||+|..|+|.+|.-++||+|.+..||+++|||+|+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6899999999999999
Q ss_pred CCCccCCC-------CCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcC-CCCCCc
Q 000419 532 NKRFIKPK-------LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS-KSSKFS 603 (1530)
Q Consensus 532 ~~~~~~p~-------~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~-~~~~~~ 603 (1530)
|++|..-+ +.-.+|-|.||||+|+|++.||++||+|.+..|+-.+|..|+++++++||+.....-. ...+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 2346899999999999999999999999999999999999999999999996533222 223668
Q ss_pred cchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcc
Q 000419 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1530)
Q Consensus 604 tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1530)
|.|++||.|+..||+.|.+-+|+||||||||+.|.|+.||...|.+|.||.|+||.+|++|+||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC--CCchHHHHHHHHHhcCC-Ccceecccchhhchhh-HHHHHHHhhhhchhHHHHHHHHHhhHHHHHHHHHhh
Q 000419 684 APDVLDG--NYDDKVACEKILDKMGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR 759 (1530)
Q Consensus 684 ~~~~~~~--~~~~~~~~~~il~~~~~-~~~~iGkTkVF~r~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r 759 (1530)
++..+.. ..++++.|..+++..|. +++.+|+||||+|... +-.||..|.+.+...++.||+.||||++|.+|++++
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875532 23578999999999987 4899999999999875 578999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhH
Q 000419 760 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLT 805 (1530)
Q Consensus 760 ~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~~R~~~~R~~y~~ 805 (1530)
++++.|+ +||.+.. ..++..||+.+|+++.++.|.+
T Consensus 720 a~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCC
Confidence 9999998 8885542 2456789999999999999864
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.4e-182 Score=1710.60 Aligned_cols=657 Identities=48% Similarity=0.827 Sum_probs=615.4
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
..+++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++. .+||||||||+.|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998 99999999998764 4699999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
|+.|...++||||||||||||||||++|+||+|||.+++. ..|+++|+++||||||||||||+|||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 36999999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceee
Q 000419 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1530)
|..|+.||+.|||+++++..||+|||||||||||+|.+.++.+.+.+.+ .+.+..||+||||++++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 9999999999999999999999999999999999998754333333332 3479999999999999999999999999
Q ss_pred eCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCC-CCCeEEeeecccCccCCCCCCHHHHHhhhhhHH
Q 000419 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEK 457 (1530)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~ 457 (1530)
++++.+.+|++++||..+||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754 346899999999999999999999999999999
Q ss_pred HHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccC
Q 000419 458 LQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK 537 (1530)
Q Consensus 458 Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~ 537 (1530)
|||+||++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~ 474 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRG 474 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCC-----CC-C-----cCCCCCCccch
Q 000419 538 PKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPL-----PE-E-----SSKSSKFSSIG 606 (1530)
Q Consensus 538 p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~-----~~-~-----~~~~~~~~tv~ 606 (1530)
|+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. . +.+.++..||+
T Consensus 475 ~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~ 551 (677)
T cd01383 475 ER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVG 551 (677)
T ss_pred CC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchH
Confidence 75 578999999999999999999999999999999999999999876 55421 10 0 11123568999
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCC
Q 000419 607 SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPD 686 (1530)
Q Consensus 607 ~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~ 686 (1530)
++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++.
T Consensus 552 ~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 631 (677)
T cd01383 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631 (677)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 687 VLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 687 ~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
... ..|++..|+.||+.+++ ++|++|+||||||+++++.||..|
T Consensus 632 ~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 632 NIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 654 35788999999998876 489999999999999999999875
No 12
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.9e-182 Score=1714.98 Aligned_cols=662 Identities=45% Similarity=0.776 Sum_probs=626.4
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000419 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| +|++++|+.|+++..+++|||||+||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEE
Q 000419 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1530)
|...++||||||||||||||||++|++|+|||.++++.. ....|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986532 2356999999999999999999999999999999999999
Q ss_pred EcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000419 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000419 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
++.||+.|||+++++.+||+|||||||||||+|...++ +.+.+.+ ...++.||.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2334443 3579999999999999999999999999998
Q ss_pred ----ceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccC-CCCCeEEeeecccCccCCCCCCHHHHHhhhhhH
Q 000419 382 ----EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1530)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE 456 (1530)
|.+++|+++++|.++||+|||+||++||+|||.+||.+|.++ .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CCCcccccchhhhcCC-CCchHHHHHHHHHHhcCCCC
Q 000419 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFAQKLYQTFKSNKR 534 (1530)
Q Consensus 457 ~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 534 (1530)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHHHHHHHH
Q 000419 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1530)
Q Consensus 535 ~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 614 (1530)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 888888889999999999999999999999999999999999999999999999986433222 2256899999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCC-CCCCc
Q 000419 615 SLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL-DGNYD 693 (1530)
Q Consensus 615 ~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1530)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|++... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23458
Q ss_pred hHHHHHHHHHhcCC--Ccceecccchhhchh-hHHHHHHHh
Q 000419 694 DKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1530)
Q Consensus 694 ~~~~~~~il~~~~~--~~~~iGkTkVF~r~~-~~~~Le~~r 731 (1530)
+++.|+.||..+++ +.|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 89999999999876 489999999999998 688999865
No 13
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.1e-181 Score=1705.77 Aligned_cols=661 Identities=41% Similarity=0.728 Sum_probs=617.9
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000419 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1530)
Q Consensus 62 ~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~ 141 (1530)
+|+|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++.+.+++||||||||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEE
Q 000419 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l 221 (1530)
.|...++||||||||||||||||++|++|+|||.+++.. ...|+++|+++||||||||||||+|||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 25699999999999999999999999999999999999
Q ss_pred EEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000419 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYL 300 (1530)
Q Consensus 222 ~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~ 300 (1530)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++++|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC--CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceee
Q 000419 301 ATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1530)
Q Consensus 301 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1530)
.|+.||+.|||+++++..||+|||||||||||+|..... .+.+.+.+ ...+..||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999987532 12233433 3479999999999999999999999999
Q ss_pred eCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHH
Q 000419 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1530)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~L 458 (1530)
+++|.+.+|+++++|.++||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999874 4568999999999999999999999999999999
Q ss_pred HhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccCC
Q 000419 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1530)
Q Consensus 459 q~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~p 538 (1530)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|+|++|++|++..+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCC---------c--CCCCCCccchH
Q 000419 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE---------S--SKSSKFSSIGS 607 (1530)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~---------~--~~~~~~~tv~~ 607 (1530)
+.+.+.|+|+||||+|+|+++||++||+|.++++++++|.+|++++|+.+|+..... + ++..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999753210 0 01124579999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCC
Q 000419 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1530)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1530)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
.....+.+..+..++..+++ +.|++|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 43332334445788887765 479999999999999999999876
No 14
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.8e-181 Score=1705.55 Aligned_cols=664 Identities=41% Similarity=0.681 Sum_probs=622.5
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccC-cCCCCchHHHHHHHH
Q 000419 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQ-FGELSPHVFAIADVA 139 (1530)
Q Consensus 61 ~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHi~ava~~A 139 (1530)
..++|||+.|++||||+|||+|+.||.+++||||+|+||||||||+++| +|+++.++.|+++. .+++|||||+||+.|
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~A 84 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVA 84 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999998 99999999999887 789999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
|++|...++||||||||||||||||++|+||+|||.+++.. ..+.+|+++|+++||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i 163 (692)
T cd01385 85 YYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 163 (692)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 99999999999999999999999999999999999997532 23367999999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+
T Consensus 164 ~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~ 243 (692)
T cd01385 164 QVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE 243 (692)
T ss_pred EEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999888999999999887789999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC---CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhc
Q 000419 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~ 375 (1530)
|..|+.||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.+ .+.+..||.||||++++|.++||++
T Consensus 244 f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~ 320 (692)
T cd01385 244 FERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKK 320 (692)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999987532 33444443 3579999999999999999999999
Q ss_pred eeeeCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCC---CCCeEEeeecccCccCCCC-CCHHHHHh
Q 000419 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP---NSRTIIGVLDIYGFESFKL-NSFEQFCI 451 (1530)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfEQlci 451 (1530)
++.+++|.+++|++++||..+||+|||+||++||+|||++||.+|.+.. ....+||||||||||+|+. ||||||||
T Consensus 321 ~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcI 400 (692)
T cd01385 321 RTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCI 400 (692)
T ss_pred eEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhh
Confidence 9999999999999999999999999999999999999999999998643 2468999999999999999 99999999
Q ss_pred hhhhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcC
Q 000419 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1530)
Q Consensus 452 NyaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 531 (1530)
|||||||||+||+|||+.||++|.+|||+|.+|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.+++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~ 480 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD 480 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcC---------CCCCC
Q 000419 532 NKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------KSSKF 602 (1530)
Q Consensus 532 ~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~---------~~~~~ 602 (1530)
|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+.... ++.+.
T Consensus 481 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~ 560 (692)
T cd01385 481 NKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAA 560 (692)
T ss_pred CCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccC
Confidence 999999988888999999999999999999999999999999999999999999999986432211 11234
Q ss_pred ccchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhc
Q 000419 603 SSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1530)
Q Consensus 603 ~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~ 682 (1530)
+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|++||++
T Consensus 561 ~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~ 640 (692)
T cd01385 561 PSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRI 640 (692)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCchHHHHHHHHHhcCCC--cceecccchhhchhhHHHHHHHhh
Q 000419 683 LAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1530)
Q Consensus 683 l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVF~r~~~~~~Le~~r~ 732 (1530)
|+|... .+.++.|+.||+.++++ .|++|+||||||++++..||....
T Consensus 641 L~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 641 LLPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred hCcccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 998643 23467799999998764 899999999999999999998644
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=4.6e-181 Score=1709.45 Aligned_cols=665 Identities=43% Similarity=0.729 Sum_probs=620.1
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
.+.++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+|++|+++.+..|+++..+++||||||||+.|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
|++|...++||||||||||||||||++|+||+|||.+++++ .+|+++|+++||||||||||||+|||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999987542 57999999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCC------------
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN------------ 286 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~------------ 286 (1530)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred --------------ccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC-CCccccccccch
Q 000419 287 --------------CYALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE-ADSSVIKDEKSR 351 (1530)
Q Consensus 287 --------------~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~ 351 (1530)
|..++++||+++|..|+.||+.|||+++++..||+|||||||||||+|.+.+. .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 33467899999999999999999999999999999999999999999987432 23344432 245
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhceee-----eCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 000419 352 FHLNTTAELLKCDAKSLEDALINRVMV-----TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNS 426 (1530)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~~~l~~~~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~ 426 (1530)
..+..||.||||++++|.++|++|++. ++++.+.+|++++||..+||+|||+||++||+|||.+||.++..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 679999999999999999999999998 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEeeecccCccCCCCCCHHHHHhhhhhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccc
Q 000419 427 RTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIAL 506 (1530)
Q Consensus 427 ~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~l 506 (1530)
..+||||||||||+|+.|||||||||||||||||+||++||+.||++|++|||+|++|+|.||++|||||++||.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCchHHHHHHHHHHhcCCCCccCCCCC----------CCCeEEEeccceeEeecchhhhhccccchHHHHHH
Q 000419 507 LDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVL 576 (1530)
Q Consensus 507 Ldee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~~~----------~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~l 576 (1530)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988777532 35899999999999999999999999999999999
Q ss_pred HHhCCchhhhccCCCCCCCc---CC--CCCCccchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHh
Q 000419 577 LTASKCPFVSGLFPPLPEES---SK--SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQL 651 (1530)
Q Consensus 577 l~~s~~~~~~~lf~~~~~~~---~~--~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QL 651 (1530)
|++|+|+||+.||+...... .+ ..++.||+++||.||+.||++|++|+||||||||||+.++|+.||..+|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999998643211 11 12567999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCCCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHH
Q 000419 652 RCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDA 729 (1530)
Q Consensus 652 r~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~ 729 (1530)
||+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|++..|+.||+.+++ +.|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999886553 35789999999999876 4899999999999999999998
Q ss_pred Hh
Q 000419 730 RR 731 (1530)
Q Consensus 730 ~r 731 (1530)
+.
T Consensus 715 ~~ 716 (717)
T cd01382 715 IM 716 (717)
T ss_pred Hh
Confidence 53
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.3e-178 Score=1668.61 Aligned_cols=639 Identities=39% Similarity=0.709 Sum_probs=602.0
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000419 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~ 142 (1530)
.+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEE
Q 000419 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1530)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred EcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000419 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVR-EKFKLGDPKSFHYLNQSNCYALDGVD----DT 296 (1530)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~-~~~~L~~~~~~~yl~~~~~~~~~~~d----d~ 296 (1530)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999987777775 46
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCC---CCccccccccchHHHHHHHHhcCCCHHHHHHHHh
Q 000419 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALI 373 (1530)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 373 (1530)
++|..|+.||..|||+++++..||+|||||||||||+|.+.+. .+.+.+. +...+..||+||||+.++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~---~~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVS---NVAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 2233333 345799999999999999999999
Q ss_pred hceeeeCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCC-----CCeEEeeecccCccCCCCCCHHH
Q 000419 374 NRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-----SRTIIGVLDIYGFESFKLNSFEQ 448 (1530)
Q Consensus 374 ~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfEQ 448 (1530)
++++.++++.+++|++++||..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986532 35799999999999999999999
Q ss_pred HHhhhhhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHH
Q 000419 449 FCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQT 528 (1530)
Q Consensus 449 lciNyaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 528 (1530)
||||||||||||+||++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++..
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCccCCCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHH
Q 000419 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1530)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~ 608 (1530)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678899888889999999999999999999999999999999999887 489999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCC
Q 000419 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1530)
Q Consensus 609 f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1530)
||.||.+||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCchHHHHHHHHHhcCCCcceecccchhhchhhHHHHHHHh
Q 000419 689 DGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 689 ~~~~~~~~~~~~il~~~~~~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999865
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3e-177 Score=1677.30 Aligned_cols=668 Identities=54% Similarity=0.912 Sum_probs=631.3
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
...+++||+.|++|||++||++|+.||..+.||||+|++|||||||+++| +|+++.+..|+++..+++|||||+||+.|
T Consensus 4 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~A 82 (677)
T smart00242 4 KFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNA 82 (677)
T ss_pred ccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
|+.|...++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~ 161 (677)
T smart00242 83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI 161 (677)
T ss_pred HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence 999999999999999999999999999999999999986532 2457999999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++
T Consensus 162 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~ 241 (677)
T smart00242 162 EIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEE 241 (677)
T ss_pred EEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcc-ccccccchHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000419 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSS-VIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 377 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1530)
|.+++.||+.|||+++++.+||+|||||||||||+|.+.++.+.. .+. +...++.||+||||++++|.++|+++++
T Consensus 242 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 318 (677)
T smart00242 242 FKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKI 318 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEE
Confidence 999999999999999999999999999999999999875432221 222 3457999999999999999999999999
Q ss_pred eeCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHH
Q 000419 378 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEK 457 (1530)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~ 457 (1530)
.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||
T Consensus 319 ~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEk 398 (677)
T smart00242 319 KTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEK 398 (677)
T ss_pred EeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHH
Confidence 99999999999999999999999999999999999999999999876788999999999999999999999999999999
Q ss_pred HHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccC
Q 000419 458 LQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK 537 (1530)
Q Consensus 458 Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~ 537 (1530)
||++||+++|+.||++|++|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+
T Consensus 399 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~ 478 (677)
T smart00242 399 LQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSK 478 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHHHHHHHHHH
Q 000419 538 PK-LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSL 616 (1530)
Q Consensus 538 p~-~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L 616 (1530)
|+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.+|+.......+..+.+||+++|+.||+.|
T Consensus 479 ~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L 558 (677)
T smart00242 479 PRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKL 558 (677)
T ss_pred CCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHH
Confidence 84 45679999999999999999999999999999999999999999999999875443333446789999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCC-CCchH
Q 000419 617 METLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDK 695 (1530)
Q Consensus 617 ~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~ 695 (1530)
|++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..+++
T Consensus 559 ~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k 638 (677)
T smart00242 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAK 638 (677)
T ss_pred HHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864432 24689
Q ss_pred HHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHhh
Q 000419 696 VACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1530)
Q Consensus 696 ~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r~ 732 (1530)
+.|+.||+.+++ +.|++|+||||||++++..||+.|.
T Consensus 639 ~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 639 EACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 999999999864 5899999999999999999999874
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-177 Score=1527.58 Aligned_cols=695 Identities=41% Similarity=0.718 Sum_probs=648.0
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|+|+..-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 34799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceE
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~ 219 (1530)
|++|....+||||||||||||||||+||+||+|++.+++ .+.+...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 3455567889999999999999999999999999999999
Q ss_pred EEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000419 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
+|+|+..|..+|++|.+|||||||||.|.++||||||||||++ |+.+.|..||+..|+.|.||+.++|+.++++||.++
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceee
Q 000419 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1530)
|++|+.||+++|+.+++|+.||++||||||||||.|.+.+ ..+.+.+. +.++-.|.|||||...|++.||.|.+.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999832 33444443 368899999999999999999999987
Q ss_pred eC----CceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCC-CCeEEeeecccCccCCCCCCHHHHHhhh
Q 000419 379 TP----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1530)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlciNy 453 (1530)
+. .+++.+||+++||...||||||+||.+||||||++||.++..... ...+||||||||||+|+.||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 53 589999999999999999999999999999999999999985433 5689999999999999999999999999
Q ss_pred hhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CCCcccccchhhhcCC----CCchHHHHHHHHHH
Q 000419 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFAQKLYQT 528 (1530)
Q Consensus 454 aNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~p----~~~d~~~~~kl~~~ 528 (1530)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||. .|.||+++|||.|.-. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4679999999999754 46799999999999
Q ss_pred hcCCCCccCCCCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCcCCCCCCccchHH
Q 000419 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1530)
Q Consensus 529 ~~~~~~~~~p~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~ 608 (1530)
+++||+|..- ...|+|+||||+|+||++||.+||||.|..|+++|+..|+++|++.||+...+.. +..+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchhh
Confidence 9999999743 4789999999999999999999999999999999999999999999999865443 33467899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCC
Q 000419 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1530)
Q Consensus 609 f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1530)
.++|-++|++||..|.||||||||||+.|.|+.||...|++|+.|.|+-|.|||+|+||.+|..|+.|++||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred C-CCCchHHHHHHHHHhcCC--Ccceecccchhhchh-hHHHHHHHhhhhchhHHHHHHHHHhhHHHHHHHHHhhhHHHH
Q 000419 689 D-GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIV 764 (1530)
Q Consensus 689 ~-~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~-~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~ 764 (1530)
. ...|++.+|+.||+.... ++||+|.||||++.. .+-.||.+|.......|..||+.||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 245899999999998654 589999999999985 467899999999999999999999999999988888865544
Q ss_pred H
Q 000419 765 L 765 (1530)
Q Consensus 765 I 765 (1530)
+
T Consensus 725 l 725 (1106)
T KOG0162|consen 725 L 725 (1106)
T ss_pred H
Confidence 3
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=3.2e-175 Score=1664.76 Aligned_cols=662 Identities=53% Similarity=0.871 Sum_probs=621.3
Q ss_pred CCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000419 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~ 142 (1530)
+++||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|+++.++.|+++..+++||||||||+.||++
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEE
Q 000419 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1530)
|...++||||||||||||||||++|++|+||+.+++.. ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 357999999999999999999999999999999999999
Q ss_pred EcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000419 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999998899999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCc--cccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000419 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADS--SVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
++.||+.|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.+|.||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543332 3333 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHH
Q 000419 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQ 459 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq 459 (1530)
+++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887667899999999999999999999999999999999
Q ss_pred hHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCCCCccC-C
Q 000419 460 QHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK-P 538 (1530)
Q Consensus 460 ~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~~-p 538 (1530)
|+|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+++|++|++|+++.+++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998644 4
Q ss_pred CCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCc-----------CCCCCCccchH
Q 000419 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------SKSSKFSSIGS 607 (1530)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~-----------~~~~~~~tv~~ 607 (1530)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+ .+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 4567899999999999999999999999999999999999999999999998642211 12225689999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCC
Q 000419 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1530)
Q Consensus 608 ~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1530)
+|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
..........|+.++..+++ +.|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333334459999998876 489999999999999999999865
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=6.1e-175 Score=1653.93 Aligned_cols=660 Identities=31% Similarity=0.500 Sum_probs=591.9
Q ss_pred CCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000419 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1530)
Q Consensus 64 ~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m 143 (1530)
+|||+.|++||||+|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEEE
Q 000419 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQF 223 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~f 223 (1530)
...++||||||||||||||||++|+||+|||.+++..+. ..++ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999864321 1234 57999999999999999999999999999999999
Q ss_pred cCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCC-ccccCCCCcHHHHHH
Q 000419 224 DKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN-CYALDGVDDTEEYLA 301 (1530)
Q Consensus 224 ~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~-~~~~~~~dd~~~f~~ 301 (1530)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...+++||+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765544333332 334678999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000419 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
|+.||+.|||+++++..||+|||||||||||+|.+.. +.+.+.+ .+.++.||.||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 3469999999999999999999998876553
Q ss_pred c-------------eEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCC-----
Q 000419 382 E-------------VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKL----- 443 (1530)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1530)
+ .+..++++.+|.++||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3445678999999999999999999999999999999998766678999999999999984
Q ss_pred -CCHHHHHhhhhhHHHHhHhhHhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCC--------------Ccccccc
Q 000419 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKP--------------GGIIALL 507 (1530)
Q Consensus 444 -NsfEQlciNyaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~-~dn~~~ldli~~~~--------------~Gil~lL 507 (1530)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997655 79999999999865 4999999
Q ss_pred hhhhcCCCCchHHHHHHHHHHhcCCCCccCCC------CCCCCeEEEeccce--eEeecchhhhhccccc-hHHHHHHHH
Q 000419 508 DEACMFPKSTHETFAQKLYQTFKSNKRFIKPK------LSRTSFTISHYAGE--VTYLADLFLDKNKDYV-VAEHQVLLT 578 (1530)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~~~~p~------~~~~~F~i~Hyag~--V~Y~~~gfl~kN~d~~-~~~~~~ll~ 578 (1530)
||||++|++||++|++||++.+++|+.|.+++ .....|+|+||||. |+|+++||+|||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999988887622 12468999999995 9999999999999965 689999999
Q ss_pred hCCchhhhccCCCCCC-------------CcC----------C--------CCCCccchHHHHHHHHHHHHHHccCCCEE
Q 000419 579 ASKCPFVSGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNSTEPHY 627 (1530)
Q Consensus 579 ~s~~~~~~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~L~~~l~~t~~h~ 627 (1530)
+|++++|+.||+.... ..+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999964210 000 0 01345899999999999999999999999
Q ss_pred EEecCCCCCCC----------------------CCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccC
Q 000419 628 IRCVKPNNALR----------------------PAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAP 685 (1530)
Q Consensus 628 irCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 685 (1530)
|||||||+.|. |+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999987
Q ss_pred CCCC------CCCchHHHHHHHHHhcCC--CcceecccchhhchhhHHHHHHHh
Q 000419 686 DVLD------GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 686 ~~~~------~~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r~~~~~~Le~~r 731 (1530)
.... ...|++++|+.||+.+++ +.|+||+||||||++++..||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6321 235889999999999876 479999999999999999999876
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=8.3e-167 Score=1609.92 Aligned_cols=653 Identities=50% Similarity=0.877 Sum_probs=579.0
Q ss_pred CCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000419 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1530)
Q Consensus 64 ~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m 143 (1530)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| +|+++++..|+++..+++||||||||+.||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCC-CCCccHHHHHHhhchHHHhhcCccccCCCCCCcccceEEEE
Q 000419 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1530)
++.++||||||||||||||||++|+||+||+.++.... .....|+++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred EcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000419 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
||.+|.++||+|.+||||||||+.|++||||||||||||+ ++++++++|+|.++++|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000419 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
++.||+.|||+++++..||+|||||||||||+|....+.+.+.+.+. ..++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998765455555543 359999999999999999999999999999
Q ss_pred ceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCC-CCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHHh
Q 000419 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 460 (1530)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~ 460 (1530)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..|||||||||||||+||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999876 678999999999999999999999999999999999
Q ss_pred HhhHhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHh-cCCCCccCC
Q 000419 461 HFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKP 538 (1530)
Q Consensus 461 ~f~~~vf~~eq~~y~~Egi~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~~p 538 (1530)
+|++++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++++.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999888
Q ss_pred C----CCCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCC--------------------
Q 000419 539 K----LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-------------------- 594 (1530)
Q Consensus 539 ~----~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~-------------------- 594 (1530)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+....
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976421
Q ss_pred -CcCCCCCCccchHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccCh
Q 000419 595 -ESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1530)
Q Consensus 595 -~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~ 673 (1530)
......+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|++||++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 0001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCC----CCchHHHHHHHHHhcCC--Ccceecccchhhc
Q 000419 674 YEFLHRFGVLAPDVLDG----NYDDKVACEKILDKMGL--KGYQIGKTKVFLR 720 (1530)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVF~r 720 (1530)
.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999875532 36889999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=4.9e-116 Score=1112.83 Aligned_cols=752 Identities=36% Similarity=0.574 Sum_probs=662.3
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000419 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~A 139 (1530)
...+++||+.|.+++|+.+++||..||..+.||||+|++|++||||+.+|.+|.+..+..|.+++.+++||||||+|+.|
T Consensus 59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~ 138 (1062)
T KOG4229|consen 59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA 138 (1062)
T ss_pred ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhh-CCCCCCCccHHHHHHhhchHHHhhcCccccCCCCCCcccce
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG-GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF 218 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~-~~~~~~~~~ie~~il~snpilEaFGNAkT~rN~NSSRfGk~ 218 (1530)
|+.|.+...||||+||||||||||++|+++++||+.++ +.. ..++.+|+.+||+|||||||+|.+||||||||||
T Consensus 139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~----~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~ 214 (1062)
T KOG4229|consen 139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNN----SPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY 214 (1062)
T ss_pred HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCC----CchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence 99999999999999999999999999999999999998 432 5789999999999999999999999999999999
Q ss_pred EEEEEcCCCccccceeeeeccccccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCcccc-CCCCcH
Q 000419 219 VELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYAL-DGVDDT 296 (1530)
Q Consensus 219 ~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~-~~~dd~ 296 (1530)
|++.|...|.|.||.+..||||||||+.|+.+||||||||++++ .+.+++..+.|+.+++|.||+++.+..+ +|.+|.
T Consensus 215 i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~ 294 (1062)
T KOG4229|consen 215 IKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDV 294 (1062)
T ss_pred EEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999 6778899999999999999999999999 999999
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHhhcCeeEEecC--CCCccccccccchHHHHHHHHhcCCCHHHHHHHHhh
Q 000419 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIN 374 (1530)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~ 374 (1530)
.+|..+..||..+||+.+++..||+++|||||+|||+|.+.. ..|.+.+.+ ...+..+|.||+++...|.+++|.
T Consensus 295 ~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~ 371 (1062)
T KOG4229|consen 295 AQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTA 371 (1062)
T ss_pred HhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhcc
Confidence 999999999999999999999999999999999999997632 234444443 357999999999999999999999
Q ss_pred ceeeeCCceEeccCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCC--CCeEEeeecccCccCCCCCCHHHHHhh
Q 000419 375 RVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN--SRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1530)
Q Consensus 375 ~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfEQlciN 452 (1530)
++..++++.+..+++.++|.++|||+||.||++||+|||.+||..+.++.. +..+||||||||||+|+.|||||+|||
T Consensus 372 ~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in 451 (1062)
T KOG4229|consen 372 RVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCIN 451 (1062)
T ss_pred cceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654 378999999999999999999999999
Q ss_pred hhhHHHHhHhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHHHHHHHHHHhcCC
Q 000419 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSN 532 (1530)
Q Consensus 453 yaNE~Lq~~f~~~vf~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~ 532 (1530)
||||+||++||+|||..||+||..|+|+|..|.|.||++|+|+|..||.||+.+||||+.+|+++|.+++.|+..+++.+
T Consensus 452 ~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~ 531 (1062)
T KOG4229|consen 452 LANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSN 531 (1062)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccCCCC-CCCCeEEEeccceeEeecchhhhhccccchHHHHHHHHhCCchhhhccCCCCCCCc---------------
Q 000419 533 KRFIKPKL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES--------------- 596 (1530)
Q Consensus 533 ~~~~~p~~-~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll~~s~~~~~~~lf~~~~~~~--------------- 596 (1530)
..|..|+. ..+.|+|.||||.|.|++.||+|||+|.++.++..++++|.+.++..++...+...
T Consensus 532 ~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~ 611 (1062)
T KOG4229|consen 532 NLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPV 611 (1062)
T ss_pred cccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccc
Confidence 88877765 45799999999999999999999999999999999999999888877664311000
Q ss_pred --------------------------------------------------C-----------------------------
Q 000419 597 --------------------------------------------------S----------------------------- 597 (1530)
Q Consensus 597 --------------------------------------------------~----------------------------- 597 (1530)
+
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~ 691 (1062)
T KOG4229|consen 612 PLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRL 691 (1062)
T ss_pred cchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhh
Confidence 0
Q ss_pred --CC----------C--------------C--------------------------------------------------
Q 000419 598 --KS----------S--------------K-------------------------------------------------- 601 (1530)
Q Consensus 598 --~~----------~--------------~-------------------------------------------------- 601 (1530)
++ . +
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 771 (1062)
T KOG4229|consen 692 SSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVR 771 (1062)
T ss_pred hhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccc
Confidence 00 0 0
Q ss_pred Cccch----------------HHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhh
Q 000419 602 FSSIG----------------SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCA 665 (1530)
Q Consensus 602 ~~tv~----------------~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~ 665 (1530)
...++ .++......++..+....|.|++||+-|..+....|+...|..|+++.|+++..+++..
T Consensus 772 ~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~ 851 (1062)
T KOG4229|consen 772 RERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRS 851 (1062)
T ss_pred cchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheec
Confidence 00011 12233444577777778899999999997788889999999999999999999999999
Q ss_pred cCCcccChHHHHHHhhcccCCCCCCCCchHHHHHHHHHh--cCCCcceecccchhhchhhHHHHHHHh-hhhchhHHHHH
Q 000419 666 GYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDK--MGLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARII 742 (1530)
Q Consensus 666 gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~~iGkTkVF~r~~~~~~Le~~r-~~~l~~aa~~I 742 (1530)
+|+..+++.+|...+++..+.... ......... ...+.++.|++++|+.......++..- .+.....+...
T Consensus 852 ~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k 925 (1062)
T KOG4229|consen 852 LYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFK 925 (1062)
T ss_pred cccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHH
Confidence 999999999999999988773221 111112221 134689999999999876654443332 22222247788
Q ss_pred HHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHH
Q 000419 743 QRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYE-QLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMV 821 (1530)
Q Consensus 743 Q~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~-~~r~~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~l 821 (1530)
|++++....|+.+.++..+.+.+| |++++.|+... ......+|.-+|..|+.+..+..+...+.+++.+|..+++..
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 1003 (1062)
T KOG4229|consen 926 QKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPA 1003 (1062)
T ss_pred HHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccch
Confidence 999999999999999999999999 88888877443 223445788999999999999999999999999999988876
Q ss_pred HHHHH
Q 000419 822 ARNEF 826 (1530)
Q Consensus 822 aRk~~ 826 (1530)
.+..+
T Consensus 1004 ~~~~~ 1008 (1062)
T KOG4229|consen 1004 YTMIF 1008 (1062)
T ss_pred hhhhH
Confidence 66654
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=5e-31 Score=314.52 Aligned_cols=263 Identities=17% Similarity=0.319 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHhhhc-CCcccceehHHHHHHHHHHHHHhhhhcCCCCCCccccccccchhhhcccccccCCCCCCCc
Q 000419 1158 TTVFDRIIQTIASAIEVQ-DNNDVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGL 1236 (1530)
Q Consensus 1158 ~~ll~~ii~~I~~~v~~~-~d~~~layWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 (1530)
..||.+++++++.++..+ ++...|+|||+|.+++|||+++.-.
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~------------------------------------ 638 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRD------------------------------------ 638 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccc------------------------------------
Confidence 779999999999999987 5566999999999999999998300
Q ss_pred ccccCCCcCcchhhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhcCCCCcccccccCCCcchhHhhh
Q 000419 1237 SFLNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLCIQAPRTSRASLVKGRSQANAVAQQ 1316 (1530)
Q Consensus 1237 ~~~~~~l~~~~~e~~~v~~~~~~~~fkqqL~~l~~~iy~~l~~~i~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1316 (1530)
+.....+.+ .-|..+++.+|..|+.|++.+|++.+...+.-- .
T Consensus 639 ------ls~~~~~aq------------~vla~~vq~aFr~LV~clqsel~~~~~afLden-------------------~ 681 (1629)
T KOG1892|consen 639 ------LSRITLDAQ------------DVLAHLVQMAFRYLVHCLQSELNNYMPAFLDEN-------------------S 681 (1629)
T ss_pred ------hhheehhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------------c
Confidence 000001111 237788899999999999999999876655211 1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc--CCCcccchhhHHHhchhHHHHHHhhc
Q 000419 1317 ALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEYVKAGLAELEQWCYDA 1394 (1530)
Q Consensus 1317 ~~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~LE~W~~~~ 1394 (1530)
...+.+.+|+.+|+..|.+|+.|+|+..|+.|+|+|||||||+++||+|+.. ..+|+-.||--|++.|..||.||+..
T Consensus 682 ~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErq 761 (1629)
T KOG1892|consen 682 LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQ 761 (1629)
T ss_pred ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 1234678899999999999999999999999999999999999999999998 68999999999999999999999999
Q ss_pred CcccccchHHHhHHHHHHHHHHhcCCCCcCCHHHHHHccCCCCCHHHHHHHHhcCcCCCCCCCCCCHHHHHHHHhhhhcc
Q 000419 1395 TEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTED 1474 (1530)
Q Consensus 1395 ~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ln~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~l~~~~~~~ 1474 (1530)
|.+.+.+| ||..|+||++||+++|....++..+ ...|.+||+.|+.+||..|++++.|+ ++|.+++..+..+....
T Consensus 762 GlElAAdC--HL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ 837 (1629)
T KOG1892|consen 762 GLELAADC--HLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENT 837 (1629)
T ss_pred cchHhhhc--cHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhh
Confidence 97777776 9999999999999998777777777 68999999999999999999999995 99999999985544332
Q ss_pred c-----CCCCCCcccccCCCCCCccccc
Q 000419 1475 S-----NNAVSSSFLLDDDSSIPFTVDD 1497 (1530)
Q Consensus 1475 ~-----~~~~~~~lllD~~~~~Pf~~~~ 1497 (1530)
. .++..-+|-.+++.-+||++|+
T Consensus 838 ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 838 ADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred hhHhhhccCceeecccCcccccceeecC
Confidence 2 2344446777888999999998
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=2.8e-27 Score=233.32 Aligned_cols=105 Identities=36% Similarity=0.667 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhHHHHHHhhccCCCcccchhhHHHhchhHHHHHHhhcCcccccchHHHhHHHHHHHHHHhcCCCCcCCHH
Q 000419 1348 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLN 1427 (1530)
Q Consensus 1348 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~ 1427 (1530)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+ ..++++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~--~~~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLE--EAAEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTST--TH-HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 89999999999999999999999999999999999999999999999933 2378999999999999999765555554
Q ss_pred HHHHccCCCCCHHHHHHHHhcCcCCCCC
Q 000419 1428 EITKELCPVLSIQQLYRISTMYWDDKYG 1455 (1530)
Q Consensus 1428 ~i~~~~c~~Ln~~Ql~kiL~~Y~~d~~e 1455 (1530)
.+ +++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 55 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.58 E-value=2.8e-11 Score=164.30 Aligned_cols=750 Identities=14% Similarity=0.121 Sum_probs=385.8
Q ss_pred eeeccccccccccCCCCccceeehhccc-CC----hhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhc
Q 000419 235 RTYLLERSRVCQISDPERNYHCFYLLCA-AP----PEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIV 309 (1530)
Q Consensus 235 ~~yLLEksRv~~q~~~ErnfHiFYql~~-~~----~~~~~~~~L~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~l 309 (1530)
..+....+..+.+.++..+||-|+.+.- .. ......|-| +.++...|+ ++ -..|+.+-.-|.-
T Consensus 218 pvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~---Er~yhiFyqlls~- 285 (1930)
T KOG0161|consen 218 PVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PG---ERNYHIFYQLLSG- 285 (1930)
T ss_pred chHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cc---hhHHHHHHHHHhC-
Confidence 3455567888899999999999999876 22 122222222 122233332 12 2233333333321
Q ss_pred CCCHHHHHHHHHHHHHHHh-hcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhc--eeeeCCceEec
Q 000419 310 GISEEEQDAIFRVVAAILH-LGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR--VMVTPEEVITR 386 (1530)
Q Consensus 310 g~~~~~~~~i~~ilaaiLh-LGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~--~~~~~~e~~~~ 386 (1530)
.++..+...+ +-+ .-|..|.......-..+.|......+..+-..||++++.....+--- .+..|+-.+..
T Consensus 286 -~~~~l~~~l~-----L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~ 359 (1930)
T KOG0161|consen 286 -ADPELKEELL-----LSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQ 359 (1930)
T ss_pred -CCHHHHHHHh-----hcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhc
Confidence 1222221110 000 01111222111100011222222346677789999998776554221 11223222222
Q ss_pred cCChhhHhhhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEeeecccCccCCCCCCHHHHHhhhhhHHHHhHhhHhh
Q 000419 387 TLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHV 466 (1530)
Q Consensus 387 ~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlciNyaNE~Lq~~f~~~v 466 (1530)
.-..++|.-.....|-.+-.. +..=+.-...++..+ ...+.+-.++.|+... | .++|=+-|...-...+
T Consensus 360 ~~~~~qa~~~~~~~a~ka~~l-lg~~~~~~~~al~~p--riKvg~e~v~k~q~~~------q--~~~~v~alAk~lYerl 428 (1930)
T KOG0161|consen 360 EPREEQAEFDNTEVADKACHL-LGINVEEFLKALLRP--RIKVGREWVSKAQNVE------Q--VLFAVEALAKALYERL 428 (1930)
T ss_pred cccccccCCCCchHHHHHHHH-cCCCHHHHHHHhccc--ceeccchhhhhcchHH------H--HHHHHHHHHHHHHHHH
Confidence 114445544443333332211 111111112222211 1224555666666533 3 6677777776666666
Q ss_pred hhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhhcCCCCchHH----HH-HHHHHHhcCCCCccCC---
Q 000419 467 FKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHET----FA-QKLYQTFKSNKRFIKP--- 538 (1530)
Q Consensus 467 f~~eq~~y~~Egi~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~p~~~d~~----~~-~kl~~~~~~~~~~~~p--- 538 (1530)
| .....+...+++|. .+-+.+|.+++-...=||.. .|=+. |. +||.+.| +|.-|+.-
T Consensus 429 F-~wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---------nSFEQLciNytnEkLQqfF-nh~mFvlEqee 493 (1930)
T KOG0161|consen 429 F-GWLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---------NSFEQLCINYTNEKLQQFF-NHHMFVLEQEE 493 (1930)
T ss_pred H-HHHHHHHHHHhhhc----cccCCcceeeeeccccccCc---------CCHHHHHHHHHHHHHHhhh-cchhhhhhHHH
Confidence 6 45677888899997 45566676666332223322 11111 21 3444433 44444321
Q ss_pred -CCCCCCeEEEeccceeEeecchhhhhccccchHHHHHHH-------HhCCchhhhccCCCCCCCcCCCCCCccchHHHH
Q 000419 539 -KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLL-------TASKCPFVSGLFPPLPEESSKSSKFSSIGSRFK 610 (1530)
Q Consensus 539 -~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~~~~~~~~ll-------~~s~~~~~~~lf~~~~~~~~~~~~~~tv~~~f~ 610 (1530)
+--.-.+..-||+-+ -=.+.+-|+|=. .+..+| .+|...|+..|+..-. ++.++|.... +
T Consensus 494 Y~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~ 561 (1930)
T KOG0161|consen 494 YQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEECVVPKATDKTFLEKLCDQHL---GKHPKFQKPK---G 561 (1930)
T ss_pred HHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHHHhcCCCccchHHHHHHHHhh---ccCccccCcc---c
Confidence 011235666777211 112233333311 333333 2344455554443210 1222322221 3
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchhhHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcccCCCCCC
Q 000419 611 LQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG 690 (1530)
Q Consensus 611 ~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~ 690 (1530)
.+....+....-+.+ |+|.-+|-..++..-.+..|+.+|+|++ .+-|..--.| +..+..+..++.. ......+
T Consensus 562 ~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g 634 (1930)
T KOG0161|consen 562 KKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKG 634 (1930)
T ss_pred ccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCc
Confidence 334445554555555 9999999988888888899999999999 8877776666 6777777776655 2111111
Q ss_pred CC-----chHHHHHHHHHhcCCCcceecccchhh---chhh---HHHHHHHhhhhchhHHHHHHHHHhhHHHHHHHHHhh
Q 000419 691 NY-----DDKVACEKILDKMGLKGYQIGKTKVFL---RAGQ---MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR 759 (1530)
Q Consensus 691 ~~-----~~~~~~~~il~~~~~~~~~iGkTkVF~---r~~~---~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~~~~~r 759 (1530)
.. -.+...-.++..+....-.+=+--|+. ++|. -..|.++|-..+-.. +.|.+ .||-.|..|...+
T Consensus 635 ~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEg-IRicR--~GfPnr~~~~eFr 711 (1930)
T KOG0161|consen 635 SFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEG-IRICR--QGFPNRMPFQEFR 711 (1930)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHH-HHHHH--hhCccccchHHHH
Confidence 10 112222233333322111111111111 1111 122333332222221 22222 3444443333221
Q ss_pred hHHHHHHHHH--HHHH-----HHHHHHHHhh-------hHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHH
Q 000419 760 KAAIVLQSYW--RGIL-----ACKLYEQLRR-------EAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNE 825 (1530)
Q Consensus 760 ~a~i~IQ~~~--Rg~l-----aRk~~~~~r~-------~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk~ 825 (1530)
.---.+.... .|+. .++.+..+.. ...=+..++-+-+.+.-.+-..+...++.+|+.+||+++|+.
T Consensus 712 qRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~ 791 (1930)
T KOG0161|consen 712 QRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKE 791 (1930)
T ss_pred HhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000111000 0100 1111111100 000011122222333333344556678899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHH
Q 000419 826 FRFRKQT-KAAIIIEAYLRRHTACSYYKSLK---KAAVITQCGWRRRVARR---ELR----NLKMAARETGALKEAKDKL 894 (1530)
Q Consensus 826 ~~~lr~~-~aAi~IQ~~~R~~~~rr~~~~~~---~a~~~iQ~~~R~~~arr---el~----~Lk~ea~~~~~L~~~~~~L 894 (1530)
+.++... .++.+||+++|.|+..+.|.+.+ +.--.++...+....++ ++. .+...+.....+.....++
T Consensus 792 ~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~ 871 (1930)
T KOG0161|consen 792 FKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKL 871 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886655 56669999999999888776553 22223333322222221 122 2333344555566667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCcccccc-ch
Q 000419 895 EKRVEELTWRLQFEKQLRTNLEEEKA---QEIAKLQDALQAMQLQVEEA---NFRILKEQEAARKAIEEAPPIVKET-PV 967 (1530)
Q Consensus 895 e~el~eL~~~l~~e~~~~~~le~~k~---~e~~~L~~~~~eLe~~lee~---~~~l~~e~e~l~~~~eel~~~l~e~-~~ 967 (1530)
..+..+++..++.++...++.++... .....++..+.+++.++++. +..+..+..+++..++++++.+++. ..
T Consensus 872 ~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~ 951 (1930)
T KOG0161|consen 872 LEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELT 951 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877766655554433 34445555555555555433 3344455555666666665555443 44
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000419 968 IVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 1047 (1530)
Q Consensus 968 l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~ 1047 (1530)
+.+.+.+...++.+++.+++++..+++.+.++.++.+.+++.+..+...+..+++++.+|.+...+++..+.+++..+++
T Consensus 952 ~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 952 LQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999999999999999999999999999999999999999999999988877766
Q ss_pred HHH
Q 000419 1048 IRQ 1050 (1530)
Q Consensus 1048 lkq 1050 (1530)
.++
T Consensus 1032 e~~ 1034 (1930)
T KOG0161|consen 1032 EKR 1034 (1930)
T ss_pred HHH
Confidence 544
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.69 E-value=2.1e-08 Score=109.99 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCC--ccHHHHHHhhchHHHhhc-CccccC
Q 000419 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEG--RTVEQQVLESNPVLEAFG-NAKTVR 208 (1530)
Q Consensus 132 i~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~--~~ie~~il~snpilEaFG-NAkT~r 208 (1530)
||+.+..++..|. ++.|+||+..|+||||||.|..- .....+ ..+-+.+++..+..++++ +|.|.+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G----------~~~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~ 76 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEG----------KREGAGIIPRTVTDVIDLMDKGNANRTTAATAM 76 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCC----------CCCCCCcchHHHHHHHHHHhhccccccccccCC
Confidence 8998889999998 57999999999999999988431 111111 112223778889999999 999999
Q ss_pred CCCCCcccceEEEEEcCCCccc
Q 000419 209 NNNSSRFGKFVELQFDKNGRIS 230 (1530)
Q Consensus 209 N~NSSRfGk~~~l~f~~~g~i~ 230 (1530)
|++|||+..+++|++.......
T Consensus 77 N~~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 77 NEHSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred CCccCcccEEEEEEEEEeecCC
Confidence 9999999999999998655444
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.42 E-value=0.0003 Score=93.13 Aligned_cols=130 Identities=22% Similarity=0.121 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHH
Q 000419 748 TYIARKEFIALRKAAIVLQSYWRGILACKLYEQLR-REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEF 826 (1530)
Q Consensus 748 ~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r-~~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk~~ 826 (1530)
+.+...|-..+...++.||+.|||+..|++|.... +.+++..+|..+|-+ .+..+--.-...+.+|..+|....|+.+
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~r~~~ 812 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEY 812 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhcccchHHHhHHHhhHHhHHHhhHHHH
Confidence 45666677777888999999999998888886543 334444455444444 2233334455688899999998888887
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000419 827 RFRKQTKAAIIIEAY-LRRHTACSY--YKSLKKAAVITQCGWRRRVARRELRNLKMA 880 (1530)
Q Consensus 827 ~~lr~~~aAi~IQ~~-~R~~~~rr~--~~~~~~a~~~iQ~~~R~~~arrel~~Lk~e 880 (1530)
+... .....+|.. ++....+.. -....++...+|+.||...+++.+..++..
T Consensus 813 ~~~~--~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~ 867 (1463)
T COG5022 813 RSYL--ACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKE 867 (1463)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 6543 344456633 333333331 334457888888888888888888776644
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.30 E-value=1.4e-06 Score=111.40 Aligned_cols=122 Identities=21% Similarity=0.274 Sum_probs=83.9
Q ss_pred hchhHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHhhhH
Q 000419 734 VLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLR--------REAAALKIQKNFHSYTARTSYLT 805 (1530)
Q Consensus 734 ~l~~aa~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~laRk~~~~~r--------~~~AA~~IQ~~~R~~~~R~~y~~ 805 (1530)
....+|..||+++|+|..|+.|+.++.-++.||+.+||+..|+.|..+- -.-++..+|+.+|+|+.|.....
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 3457889999999999999999999999999999999999999997643 11245566666666666666555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 806 ARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLK 855 (1530)
Q Consensus 806 lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~ 855 (1530)
.-.+++.+|..+|-+..-++.-..+-++|++.||+.+|.+.++..|+++.
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55556666666665554433333444556666666666666555555443
No 29
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.21 E-value=8.5e-06 Score=104.52 Aligned_cols=86 Identities=33% Similarity=0.398 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000419 784 EAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQC 863 (1530)
Q Consensus 784 ~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQ~ 863 (1530)
..+++.||+.+|+|..|+.|..+|.+++.+|+.+||+++|+ ... ...||+.||+.||++..|+.|.....+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999 223 678999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 000419 864 GWRRRVARR 872 (1530)
Q Consensus 864 ~~R~~~arr 872 (1530)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999988
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.20 E-value=4.1e-06 Score=67.88 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=37.7
Q ss_pred CcEEEEeCCCCCeEEEEEEEecCCeEEEEeCCCcEEEEeCC
Q 000419 10 GSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVITNIS 50 (1530)
Q Consensus 10 g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~g~~~~~~~~ 50 (1530)
+.+|||||++++|+.|+|++.+|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999988754
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.96 E-value=2.7e-05 Score=99.89 Aligned_cols=117 Identities=25% Similarity=0.279 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHhh----------hHHHHHHHHHHHHHHHHHHHHH
Q 000419 760 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTAR----------SSAIQLQTGLRAMVARNEFRFR 829 (1530)
Q Consensus 760 ~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~~R~~~~R~~y~~lr----------~a~i~IQs~~Rg~laRk~~~~l 829 (1530)
.++..||..+|||+.|+.+.-+|. -+++||+.+|||..|+.|.++- .++..+|..+||+..|+...+.
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~--p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQ--PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCC--ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 478899999999999999988884 4789999999999999998653 3445678888888877766543
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000419 830 KQTKAAIIIEAYLRRHTAC--SYYKSLKKAAVITQCGWRRRVARRELRNLKMA 880 (1530)
Q Consensus 830 r~~~aAi~IQ~~~R~~~~r--r~~~~~~~a~~~iQ~~~R~~~arrel~~Lk~e 880 (1530)
+.||+.||..+|-|..- ..|.++.++++.||+.+|...++.+++++...
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~ 939 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLLV 939 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34889999999999877 67889999999999999999999888776643
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.72 E-value=0.034 Score=70.28 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=22.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000419 1318 LIAHWQSIVKSLNSYLKTMKVNYVPPFLV 1346 (1530)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~v~~~l~ 1346 (1530)
|...++..+..+++++.++....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45578888899999999888877766554
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.28 Score=61.48 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=14.6
Q ss_pred cCCCcccchhhHHHhchhHHHHHH
Q 000419 1368 RRECCSFSNGEYVKAGLAELEQWC 1391 (1530)
Q Consensus 1368 r~~~cs~s~G~qIr~nls~LE~W~ 1391 (1530)
.++-.-|=-|.-+.-+=-+.--|+
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 456666767766666655555553
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.02 Score=71.02 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKL 1017 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L 1017 (1530)
++.++.+...++..-.++..+.+++.++...+..+-.+.+.+..++
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4445555555555555555555555555555444433333333333
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.43 E-value=1.3 Score=62.76 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=4.0
Q ss_pred ecccCccCC
Q 000419 433 LDIYGFESF 441 (1530)
Q Consensus 433 LDi~GFE~f 441 (1530)
|.|.||-+|
T Consensus 5 l~l~nf~s~ 13 (1164)
T TIGR02169 5 IELENFKSF 13 (1164)
T ss_pred EEEeCeeeE
Confidence 344444444
No 36
>PRK11637 AmiB activator; Provisional
Probab=97.22 E-value=0.074 Score=66.42 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe 1042 (1530)
+..++...+.++.+|+.+...|+..|.+++
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555443
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.51 Score=62.35 Aligned_cols=17 Identities=24% Similarity=0.030 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHhcCcCC
Q 000419 1436 VLSIQQLYRISTMYWDD 1452 (1530)
Q Consensus 1436 ~Ln~~Ql~kiL~~Y~~d 1452 (1530)
+||+.=|.=.|.+|+|.
T Consensus 1202 TLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1202 TLSSLALVFALHHYKPT 1218 (1293)
T ss_pred HHHHHHHHHHHHccCCC
Confidence 45555556666666654
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.18 E-value=2.7 Score=59.62 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 000419 520 TFAQKLYQ 527 (1530)
Q Consensus 520 ~~~~kl~~ 527 (1530)
++++.+.-
T Consensus 38 ~ildAi~~ 45 (1164)
T TIGR02169 38 NIGDAILF 45 (1164)
T ss_pred HHHHHHHH
Confidence 34444443
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.16 E-value=0.11 Score=67.75 Aligned_cols=67 Identities=9% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000419 981 EVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 1047 (1530)
Q Consensus 981 e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~ 1047 (1530)
+.+.|-..+..++++...||..+..-.....+|-..|-+...+++-++..+..-+.+|.+|+..+..
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666665555444445555555555555555555555555555555554443
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.09 E-value=0.43 Score=60.96 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=8.5
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 000419 1339 NYVPPFLVRKVFTQIFSFI 1357 (1530)
Q Consensus 1339 ~~v~~~l~~Q~f~Qlf~~i 1357 (1530)
|+++...-.++|.++.--+
T Consensus 890 ye~d~~~p~~~lr~sleq~ 908 (1243)
T KOG0971|consen 890 YETDSSSPYECLRQSLEQL 908 (1243)
T ss_pred ccCCccchHHHHHHHHHHH
Confidence 4444444444444444433
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.05 E-value=1.7 Score=57.77 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCcc
Q 000419 1329 LNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCS 1373 (1530)
Q Consensus 1329 L~~~~~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs 1373 (1530)
|+.++.++....=.-...-|=|.-+..+-...-|+.++..|.+|.
T Consensus 914 ~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg 958 (1074)
T KOG0250|consen 914 LDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSG 958 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 344444444333333444555666677777777888887777664
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.04 E-value=0.14 Score=66.77 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--------------
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE-------VRNTELVKKLEDTEEKVGQLQES-------------- 1030 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e-------~~~~~l~~~L~~~e~~~~~L~~~-------------- 1030 (1530)
+.+..+||.|++.|+.++...++.+..++.+..++. .+.+.|...|...+++..+|+..
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445567777777777777777777777776654332 23455666666666666665542
Q ss_pred -------HHHHHHHHHhHHHHHHHHHHH
Q 000419 1031 -------MQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1031 -------~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
++-++..+..-+.|+..|+++
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333555566677777776
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.02 E-value=0.4 Score=63.24 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000419 882 RETGALKEAKDKLEKRVEELTWR 904 (1530)
Q Consensus 882 ~~~~~L~~~~~~Le~el~eL~~~ 904 (1530)
.++...++....+++++.+....
T Consensus 288 ~~i~~~qek~~~l~~ki~~~~~k 310 (1074)
T KOG0250|consen 288 EEIKKKQEKVDTLQEKIEEKQGK 310 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333333
No 44
>PRK11637 AmiB activator; Provisional
Probab=96.96 E-value=0.24 Score=61.88 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1016 ~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
.+..++.+....+.++..|+.+...++..+..+.
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555554443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.90 E-value=2 Score=60.94 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1011 ~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+++...+...+.++..+..+..+++.++..++.+...+++.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666667777777666666666555544
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.89 E-value=4.4 Score=57.19 Aligned_cols=42 Identities=33% Similarity=0.462 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000419 1006 AEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 1047 (1530)
Q Consensus 1006 ~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~ 1047 (1530)
++..++.+..++.+.+..+..++.....++.++.+.+..+..
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444333
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.62 Score=60.58 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=15.9
Q ss_pred ecCCCCCCchhhhHHHHHHHHHhhC
Q 000419 154 VSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 154 isGeSGaGKTe~~k~~~~yla~~~~ 178 (1530)
|+|=.|||||- |+.-++++=|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 48999999996 5666676644
No 48
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.75 E-value=0.0099 Score=73.28 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=41.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 000419 756 IALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRF 828 (1530)
Q Consensus 756 ~~~r~a~i~IQ~~~Rg~laRk~~~~~r~~~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk~~~~ 828 (1530)
.++..-++.||+.|||+++|.+|++++. ++++|+ +||.| +++..+..||..+||+..++.|.+
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka--~~~ii~-wyR~~-------K~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKA--SATIIR-WYRRY-------KLKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHH-------HHHHHHHHHHHHHHhhhhccccCC
Confidence 3444567778888888888888877763 455555 77644 344456677777777777776643
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.67 E-value=3 Score=59.13 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.4
Q ss_pred HHHHHhcC
Q 000419 699 EKILDKMG 706 (1530)
Q Consensus 699 ~~il~~~~ 706 (1530)
..+|..++
T Consensus 125 ~~~l~~~~ 132 (1179)
T TIGR02168 125 QDLFLDTG 132 (1179)
T ss_pred HHHHhccC
Confidence 34444443
No 50
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.66 E-value=0.69 Score=57.95 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=33.4
Q ss_pred hhCCCCCCCccHHHHHHhhchHHHhhcCcccc------CCCCCCcccceEEEEEcCCCccccceeeeecccccccc
Q 000419 176 LGGRSGVEGRTVEQQVLESNPVLEAFGNAKTV------RNNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVC 245 (1530)
Q Consensus 176 ~~~~~~~~~~~ie~~il~snpilEaFGNAkT~------rN~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~ 245 (1530)
|+|.||...+.-.+-|| -.+-|+.|.|..+ -|+-=--||-=-.+.=+ +..=-|--++...-+|+-||
T Consensus 149 VSGESGAGKTEstK~vL--rYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNN-NSSRFGKFveiHf~dk~~Vv 221 (1259)
T KOG0163|consen 149 VSGESGAGKTESTKAVL--RYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNN-NSSRFGKFVEIHFDDKGQVV 221 (1259)
T ss_pred EecCCCCCcchhHHHHH--HHHHhccCCCCcHHHHHhccChHHHHhccchhhccC-ChhhccceEEEEEcCCCcee
Confidence 34555443322223344 3456777776544 24444445543333222 23344666677777777776
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.63 Score=56.23 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 992 ERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 992 le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
..++..++...+.+-++...++...++..+.++..|..+...|+..|..++.+..+.+
T Consensus 194 q~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 194 QRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444445566777777778888888888888888888885554433
No 52
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.60 E-value=0.00083 Score=88.98 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHccCCCEEEEecCCCCCCCCCCCchh-hHHHHhhccchhhHHHHHhhcCCcccChHHHHHHhhcc
Q 000419 605 IGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENA-NIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1530)
Q Consensus 605 v~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1530)
++..++-++.+....|.+..+||.|||+||+.-.+..++.. .+..++...|...+....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 55566667888888888899999999999999999999988 79999999999999999999999999999988877643
Q ss_pred cCCCCCCCCchHHHHHHHHHhcCCCcceecccchhhch
Q 000419 684 APDVLDGNYDDKVACEKILDKMGLKGYQIGKTKVFLRA 721 (1530)
Q Consensus 684 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVF~r~ 721 (1530)
.-.....+.-...+|..++.+.+.+.+..+.++++-+.
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 761 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRY 761 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhccccccc
Confidence 21111111112456667777777777777777776654
No 53
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.59 E-value=0.28 Score=61.18 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000419 895 EKRVEELT 902 (1530)
Q Consensus 895 e~el~eL~ 902 (1530)
+.++.+++
T Consensus 170 ~~~v~~l~ 177 (546)
T PF07888_consen 170 REEVERLE 177 (546)
T ss_pred HHHHHHHH
Confidence 33333333
No 54
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.53 E-value=0.61 Score=53.37 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 975 ~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+..|+.++..+...+..++..-.+........+..+..+..++.+.+.........+..|+..+..|+.++...+.+
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333344445566777777777777777777777777777777777666554
No 55
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=2 Score=56.27 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=6.9
Q ss_pred HHHHHHHhhhc
Q 000419 408 LFDWLVDKINS 418 (1530)
Q Consensus 408 lF~wiv~~iN~ 418 (1530)
-++|.++.||.
T Consensus 316 ~l~~~~~tl~~ 326 (1174)
T KOG0933|consen 316 SLNLKKETLNG 326 (1174)
T ss_pred HHHHHHHHHhh
Confidence 35667766664
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.49 E-value=0.53 Score=53.08 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1530)
Q Consensus 974 ~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e 1007 (1530)
+...|+.++..+++...+++..+..+..+..+++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333
No 57
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.48 E-value=0.0035 Score=42.87 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000419 786 AALKIQKNFHSYTARTSY 803 (1530)
Q Consensus 786 AA~~IQ~~~R~~~~R~~y 803 (1530)
||++||+.||||++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444444444433
No 58
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.41 E-value=0.065 Score=71.63 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHH----HHhhhHhhhHHHHHHHHHHHHHHHHHHHHHH-----H
Q 000419 766 QSYWRGILACKLYEQLR-----REAAALKIQKNFHSYTA----RTSYLTARSSAIQLQTGLRAMVARNEFRFRK-----Q 831 (1530)
Q Consensus 766 Q~~~Rg~laRk~~~~~r-----~~~AA~~IQ~~~R~~~~----R~~y~~lr~a~i~IQs~~Rg~laRk~~~~lr-----~ 831 (1530)
|+..||+..|-.++... ..-....||..|||++. ...+......++.+|+..||+++|+++..+. .
T Consensus 542 qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~ 621 (1401)
T KOG2128|consen 542 QASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDN 621 (1401)
T ss_pred hhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 66666665555443321 22244556666666653 1112233455666666666666666654432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000419 832 TKAAIIIEAYLRRHTACSYYKSL 854 (1530)
Q Consensus 832 ~~aAi~IQ~~~R~~~~rr~~~~~ 854 (1530)
..+.+.||+..|+...|..|..+
T Consensus 622 ~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 622 MTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred hhhHHHHHHHHHhcccchHHHHH
Confidence 34555666666666666666544
No 59
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.39 E-value=0.0039 Score=42.63 Aligned_cols=20 Identities=70% Similarity=1.159 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 000419 760 KAAIVLQSYWRGILACKLYE 779 (1530)
Q Consensus 760 ~a~i~IQ~~~Rg~laRk~~~ 779 (1530)
+|++.||++|||+++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57778888888888877763
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.38 E-value=9 Score=54.32 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=18.4
Q ss_pred HHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000419 740 RIIQRQIRTYIARKEFIALRKAAIVLQSYWRGIL 773 (1530)
Q Consensus 740 ~~IQ~~~R~~l~R~~~~~~r~a~i~IQ~~~Rg~l 773 (1530)
..|..|+|-.-.-..+..++..+..++..++...
T Consensus 226 ~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~ 259 (1201)
T PF12128_consen 226 NDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQ 259 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444455556666666666555443
No 61
>PRK02224 chromosome segregation protein; Provisional
Probab=96.20 E-value=6.5 Score=54.09 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=5.0
Q ss_pred hhhchhhHH
Q 000419 717 VFLRAGQMA 725 (1530)
Q Consensus 717 VF~r~~~~~ 725 (1530)
||++.|.+.
T Consensus 133 ~~i~Qge~~ 141 (880)
T PRK02224 133 AYVRQGEVN 141 (880)
T ss_pred eEeeccChH
Confidence 556666543
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.17 E-value=0.85 Score=59.30 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1530)
Q Consensus 885 ~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~ 917 (1530)
..+...++.|+.+++.|+.++.......++++.
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled 436 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELED 436 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777777766665555444443
No 63
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.15 E-value=0.91 Score=50.02 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000419 983 DSLKALLLSERQSAEEARKAC 1003 (1530)
Q Consensus 983 ~~l~~~l~~le~~~~~leke~ 1003 (1530)
+.+..-+.++++.++.|+...
T Consensus 108 eql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhh
Confidence 333444444444444444433
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.15 E-value=0.98 Score=47.36 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 921 QEIAKLQDALQAMQLQVEEANFRILK 946 (1530)
Q Consensus 921 ~e~~~L~~~~~eLe~~lee~~~~l~~ 946 (1530)
.++..|+..+..++.+++.+...+..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666555554433
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.09 E-value=0.94 Score=58.81 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000419 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1530)
Q Consensus 1017 L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~ 1046 (1530)
+.+...+...++.++.+|+....+++.++.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 333333444444444444444443333333
No 66
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.08 E-value=0.58 Score=50.37 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 974 ~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
..+.++.|++.++..+.++++....+-.....++++...+..++..++++...+..+...+..+..+|-.+...|+.+.
T Consensus 61 ~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 61 KAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 3445566666666666666666666666666666666677777777777777777777777777777776666666653
No 67
>PRK02224 chromosome segregation protein; Provisional
Probab=96.04 E-value=1.9 Score=59.22 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=5.8
Q ss_pred HHHHhHHHHHHHHH
Q 000419 1036 EKLCNSESENQVIR 1049 (1530)
Q Consensus 1036 ~~i~eLe~e~~~lk 1049 (1530)
..+.+++.+...++
T Consensus 412 ~~l~~l~~~~~~l~ 425 (880)
T PRK02224 412 DFLEELREERDELR 425 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 68
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.96 E-value=1.6 Score=56.22 Aligned_cols=73 Identities=12% Similarity=0.232 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000419 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR---------NTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1530)
Q Consensus 971 ~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~---------~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eL 1041 (1530)
...+++.++.+.+.+..++..-++.+.+|..++..+.+. .-+....+...++++.....+...|+.++..+
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777776655322 22333344444444444444444444444443
Q ss_pred HH
Q 000419 1042 ES 1043 (1530)
Q Consensus 1042 e~ 1043 (1530)
..
T Consensus 525 ~g 526 (594)
T PF05667_consen 525 TG 526 (594)
T ss_pred HH
Confidence 33
No 69
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.94 E-value=14 Score=52.35 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=8.3
Q ss_pred HHHhchhHHHHHHhhcC
Q 000419 1379 YVKAGLAELEQWCYDAT 1395 (1530)
Q Consensus 1379 qIr~nls~LE~W~~~~~ 1395 (1530)
.++-.+..++.=+..-|
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44455555555544444
No 70
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.92 E-value=2.9 Score=49.90 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 884 TGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1530)
Q Consensus 884 ~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~ 917 (1530)
...+......+..++.+++.+++.+...+..++.
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~ 103 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLEE 103 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444444443
No 71
>PRK09039 hypothetical protein; Validated
Probab=95.87 E-value=1 Score=54.38 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 888 KEAKDKLEKRVEELTWRLQFEKQLRTN 914 (1530)
Q Consensus 888 ~~~~~~Le~el~eL~~~l~~e~~~~~~ 914 (1530)
.++...++.++.++...+..++.....
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~ 78 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQD 78 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555544443333
No 72
>PRK09039 hypothetical protein; Validated
Probab=95.83 E-value=0.79 Score=55.27 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 000419 893 KLEKRVEELTWRLQ 906 (1530)
Q Consensus 893 ~Le~el~eL~~~l~ 906 (1530)
.++.++.+++.++.
T Consensus 78 ~l~~~l~~l~~~l~ 91 (343)
T PRK09039 78 DLQDSVANLRASLS 91 (343)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444333
No 73
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.80 E-value=0.0081 Score=71.50 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=42.4
Q ss_pred eCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhh
Q 000419 102 INPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETT 166 (1530)
Q Consensus 102 vNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 166 (1530)
+|||...| |+......++. +.++|-|-| -+.-|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999997 77765555443 456776544 3556667778999999999999999754
No 74
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.80 E-value=3 Score=54.18 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000419 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1530)
Q Consensus 1012 ~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~ 1046 (1530)
.+..+...++.++..|+....+++.++.+++.++.
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 75
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.79 E-value=2.6 Score=45.41 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+..+..|+.+..-+...+..+......+.......+.....+..+|.+.+.........+..|+..+.+|+..+...+.+
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 44555666666666666666666666666666666666677777888888777777788888888888877777666554
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.73 E-value=12 Score=49.89 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 993 RQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 993 e~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+++.++|..+.+++-..-+..+++|+++|.+...-+..+.....++..|+.+++.+.+.
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444444444444444555666666666555566666666666666666655443
No 77
>PRK03918 chromosome segregation protein; Provisional
Probab=95.70 E-value=1.5 Score=60.13 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.7
Q ss_pred EEecCCCCCCchhhhHHH
Q 000419 152 ILVSGESGAGKTETTKML 169 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~ 169 (1530)
-+|+|.+|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 579999999999876533
No 78
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.70 E-value=6.9 Score=50.85 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHccCCC
Q 000419 609 FKLQLQSLMETLNSTEP 625 (1530)
Q Consensus 609 f~~~l~~L~~~l~~t~~ 625 (1530)
|-.-+..||-.|.++=|
T Consensus 201 lY~y~vkmlfkLHs~vp 217 (980)
T KOG0980|consen 201 LYDYLVKMLFKLHSQVP 217 (980)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33444455555555443
No 79
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.69 E-value=0.36 Score=65.00 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=91.4
Q ss_pred HHHHHHHhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhhhHh---
Q 000419 740 RIIQRQIRTYIARKEFIAL-------RKAAIVLQSYWRGILACKLYEQLRREAA---ALKIQKNFHSYTARTSYLTA--- 806 (1530)
Q Consensus 740 ~~IQ~~~R~~l~R~~~~~~-------r~a~i~IQ~~~Rg~laRk~~~~~r~~~A---A~~IQ~~~R~~~~R~~y~~l--- 806 (1530)
..-+..+++++.|....-+ ...-+..|+..||...|....++-...+ -.++|+..||+..|..+...
T Consensus 481 ~k~~~~~~~~l~~~~~~~~~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~f 560 (1401)
T KOG2128|consen 481 MKWLAYIYGNLVREAKKWLLEELHFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDF 560 (1401)
T ss_pred hhhHHHhhhhhhhhhhccccHHHHHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhH
Confidence 4445666666666533322 2234557888888777665444321111 24458889988888776532
Q ss_pred ----hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHH
Q 000419 807 ----RSSAIQLQTGLRAMVA--RNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLK-------KAAVITQCGWRRRVARRE 873 (1530)
Q Consensus 807 ----r~a~i~IQs~~Rg~la--Rk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~-------~a~~~iQ~~~R~~~arre 873 (1530)
-..+..+|+.|||++. -+.....-..+.++.+|+..|++..|+.|.+.. ...+.+|+..|....+..
T Consensus 561 l~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 561 LKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred HHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 3457788999999884 222222334567788899999998888775543 478889999998888888
Q ss_pred HHHHHHH
Q 000419 874 LRNLKMA 880 (1530)
Q Consensus 874 l~~Lk~e 880 (1530)
++.+.-.
T Consensus 641 y~~L~~s 647 (1401)
T KOG2128|consen 641 YKLLFTS 647 (1401)
T ss_pred HHHHhcC
Confidence 8876653
No 80
>PRK03918 chromosome segregation protein; Provisional
Probab=95.68 E-value=2.7 Score=57.72 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHhhh
Q 000419 1458 SVSSEVISSMRVLM 1471 (1530)
Q Consensus 1458 ~v~~~~i~~l~~~~ 1471 (1530)
.+++.....+...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 45565555554444
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.64 E-value=8.6 Score=50.03 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.9
Q ss_pred CCCCCHHHHH
Q 000419 1434 CPVLSIQQLY 1443 (1530)
Q Consensus 1434 c~~Ln~~Ql~ 1443 (1530)
++.||+.||+
T Consensus 934 FS~ls~h~~K 943 (980)
T KOG0980|consen 934 FSSLSLHQLK 943 (980)
T ss_pred cccccHHHHH
Confidence 4455555544
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.64 E-value=1.3 Score=53.06 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRL----EEKLCNSESENQV 1047 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~L----e~~i~eLe~e~~~ 1047 (1530)
..++..+..++..+..+++..+..+.+++.++..++...+++..+..+++.++.++++....- ..++..|+.+...
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555544444444444444444444444333221 1245555555555
Q ss_pred HHHH
Q 000419 1048 IRQQ 1051 (1530)
Q Consensus 1048 lkq~ 1051 (1530)
|...
T Consensus 288 Le~~ 291 (325)
T PF08317_consen 288 LEKL 291 (325)
T ss_pred HHHH
Confidence 5543
No 83
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.62 E-value=4.2 Score=44.02 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000419 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1530)
Q Consensus 1016 ~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~ 1045 (1530)
.+.++...+.....-...|+.++..|++.+
T Consensus 159 ~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 159 QIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555543
No 84
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.61 E-value=9.6 Score=48.68 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000419 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1016 ~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
+..+++.+...|..++..-++.+.+++++++.+++
T Consensus 271 ~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 271 KMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.57 E-value=1.4 Score=56.78 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=9.1
Q ss_pred ccCCCCCCccccc
Q 000419 1485 LDDDSSIPFTVDD 1497 (1530)
Q Consensus 1485 lD~~~~~Pf~~~~ 1497 (1530)
|-++.++||-+-.
T Consensus 594 L~~~pcipffy~~ 606 (617)
T PF15070_consen 594 LGSNPCIPFFYRA 606 (617)
T ss_pred CCCCCcccceeec
Confidence 6777788886543
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.54 E-value=19 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCchhhHHHHhhccchh
Q 000419 632 KPNNALRPAIFENANIIQQLRCGGVL 657 (1530)
Q Consensus 632 kPN~~~~~~~fd~~~v~~QLr~~gvl 657 (1530)
.++....+-.++...+...++..||-
T Consensus 111 ~~~~~~~~~~~~~~e~~r~~~~~gv~ 136 (1201)
T PF12128_consen 111 DENNGDLVQALSMWELIRELRRKGVQ 136 (1201)
T ss_pred cccCccccccccHHHHHHHHHhCCCe
Confidence 34443444556666677777776663
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.49 E-value=4.5 Score=47.60 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 980 AEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1530)
Q Consensus 980 ~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~ 1036 (1530)
.........+......++.+..++..-.+...+...+++.+|.....|+.++..||.
T Consensus 224 aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 224 AAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444555555555555555555444
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.46 E-value=3.1 Score=47.06 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR 1009 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~ 1009 (1530)
..++..++.....+.+++..+.+...++++++..+...
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.31 E-value=5.1 Score=46.72 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=10.8
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 000419 1032 QRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1032 ~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
++|..+++.|+.+...|+.+
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=10 Score=54.44 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=16.9
Q ss_pred eEEEecCCCCCCchhhhHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~ 170 (1530)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367999999999998766543
No 91
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.28 E-value=8.5 Score=45.40 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 1044 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e 1044 (1530)
...++..++|+............++....+.+...........+.+.+-|.++..|+.+...||.++.+|+.-
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666665555554444444455556666667777777777777777776643
No 92
>PTZ00014 myosin-A; Provisional
Probab=95.27 E-value=0.034 Score=73.69 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q 000419 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1530)
Q Consensus 786 AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk 824 (1530)
.+..||+.||||++|++|++.+.+++.||+.+|++++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666666666666666666554
No 93
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=13 Score=47.35 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=12.0
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 000419 1032 QRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1032 ~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
.+|+.+...|+.+|..++.+
T Consensus 295 ~~l~~~~~~LELeN~~l~tk 314 (716)
T KOG4593|consen 295 EKLQSTLLGLELENEDLLTK 314 (716)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 34455566666677666655
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.21 E-value=5.7 Score=56.86 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhcCCccccee
Q 000419 1161 FDRIIQTIASAIEVQDNNDVLAY 1183 (1530)
Q Consensus 1161 l~~ii~~I~~~v~~~~d~~~lay 1183 (1530)
++++|.-+...+....+.+.+.+
T Consensus 1142 ~n~~~~~~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1142 INKIIRDLWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHHHHHHHHcCccHHHHhhc
Confidence 34444444444444445554444
No 95
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=18 Score=48.27 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHH
Q 000419 785 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1530)
Q Consensus 785 ~AA~~IQ~~~R~~~~R~~y~~lr~a~i~IQs~~Rg~laRk 824 (1530)
.++..-|..|..|-.-+.-.+.-..+...++-++....+.
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~ 250 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERM 250 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhh
Confidence 4567777778777666655555555555555555544443
No 96
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=2.4 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLEE 1036 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le~ 1036 (1530)
+.++-.++|++.-.|++.+..|+.
T Consensus 168 llseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhh
Confidence 444445555555555555554443
No 97
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.00 E-value=13 Score=49.13 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=7.6
Q ss_pred ccCccCCCCCCHHHH
Q 000419 435 IYGFESFKLNSFEQF 449 (1530)
Q Consensus 435 i~GFE~f~~NsfEQl 449 (1530)
+-|=+.|..|+-|++
T Consensus 31 ~lg~~p~s~ng~e~i 45 (1195)
T KOG4643|consen 31 MLGSTPSSSNGEEAI 45 (1195)
T ss_pred hhccCccccchHHHH
Confidence 445555555555543
No 98
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=21 Score=48.13 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=5.1
Q ss_pred hhHHHHHHH
Q 000419 722 GQMAELDAR 730 (1530)
Q Consensus 722 ~~~~~Le~~ 730 (1530)
|.+.+||..
T Consensus 251 GmLEYLEDI 259 (1293)
T KOG0996|consen 251 GMLEYLEDI 259 (1293)
T ss_pred hHHHHHHHH
Confidence 555666654
No 99
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.93 E-value=5.3 Score=46.03 Aligned_cols=50 Identities=26% Similarity=0.356 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000419 1001 KACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1001 ke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
+.+.++..+.+.+..+++.++..-..|.+++..|.+-+.+++.....++.
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 33344444445566666677777777788888888888888877666554
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.89 E-value=7.5 Score=48.95 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1021 EEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1021 e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
+..+.....++.+|.+++..+..|+++|-
T Consensus 341 e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 341 EQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555556665555555555543
No 101
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.86 E-value=30 Score=49.59 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 973 EKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1530)
Q Consensus 973 ~~~~~Le~e~~~l~~~l~~le~~~~~leke 1002 (1530)
.+..+++.++..++.++..++..++.+++.
T Consensus 449 aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=14 Score=46.30 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 000419 883 ETGALKEAKDKLEKR 897 (1530)
Q Consensus 883 ~~~~L~~~~~~Le~e 897 (1530)
+++.++.....|.++
T Consensus 309 E~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 103
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=9.2 Score=43.87 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000419 922 EIAKLQDALQAMQLQVEEA 940 (1530)
Q Consensus 922 e~~~L~~~~~eLe~~lee~ 940 (1530)
+.+++++++++++..+.+.
T Consensus 81 eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 81 EIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 104
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.79 E-value=15 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 000419 1027 LQESMQRLEEKLCNSESENQVI 1048 (1530)
Q Consensus 1027 L~~~~~~Le~~i~eLe~e~~~l 1048 (1530)
+..+++.+++++..+..|++.+
T Consensus 672 ~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.77 E-value=2.3 Score=54.74 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1010 ~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
......+++....++..+..++..-++....|..+++.+.+.
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344555666666666666666666666666666666555443
No 106
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.72 E-value=3 Score=46.19 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 977 SLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1530)
Q Consensus 977 ~Le~e~~~l~~~l~~le~~~~~leke~~~~e 1007 (1530)
.|+.++..+.+..+.+.+.+.+|+.....++
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3444444444444444444444444444333
No 107
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.71 E-value=7.6 Score=45.41 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000419 983 DSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 983 ~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe 1042 (1530)
...++++..+..++-.++++.+..-.+++++...|....+.-..|..++.+|+++..+..
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM 289 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555554444445566666666665555566666666666555433
No 108
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.71 E-value=9.4 Score=48.14 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000419 882 RETGALKEAKDKLEKRVEELTWR 904 (1530)
Q Consensus 882 ~~~~~L~~~~~~Le~el~eL~~~ 904 (1530)
..+-.|..++.+|+.++..++..
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666666666543
No 109
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.71 E-value=31 Score=48.99 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.8
Q ss_pred hHHHHHHhh
Q 000419 673 FYEFLHRFG 681 (1530)
Q Consensus 673 ~~~F~~ry~ 681 (1530)
+.+++..+.
T Consensus 124 ~~~~l~~~~ 132 (1179)
T TIGR02168 124 IQDLFLDTG 132 (1179)
T ss_pred HHHHHhccC
Confidence 344444443
No 110
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.69 E-value=8.1 Score=42.72 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000419 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEV----RNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1530)
Q Consensus 975 ~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~----~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eL 1041 (1530)
.++|..++..++..+.+.+.++..|++.+.-... .+.....+..+...++..|+.++..|...+.+-
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655433322 122233344445555555555555555555443
No 111
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.60 E-value=18 Score=45.75 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000419 1010 NTELVKKLEDTEEKVGQL 1027 (1530)
Q Consensus 1010 ~~~l~~~L~~~e~~~~~L 1027 (1530)
+.+++.+++..|.++..|
T Consensus 614 i~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 614 IEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.58 E-value=1.4 Score=51.24 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000419 1041 SESENQV 1047 (1530)
Q Consensus 1041 Le~e~~~ 1047 (1530)
.++++..
T Consensus 295 aQEElk~ 301 (306)
T PF04849_consen 295 AQEELKT 301 (306)
T ss_pred HHHHHHH
Confidence 3333333
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.55 E-value=4.4 Score=48.75 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.7
Q ss_pred ccChHHHHHH
Q 000419 670 RRTFYEFLHR 679 (1530)
Q Consensus 670 r~~~~~F~~r 679 (1530)
+++..+|+.-
T Consensus 13 ~isL~~FL~~ 22 (325)
T PF08317_consen 13 PISLQDFLNM 22 (325)
T ss_pred CcCHHHHHHH
Confidence 4556666653
No 114
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.51 E-value=0.038 Score=39.95 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 000419 785 AAALKIQKNFHSYTARTSY 803 (1530)
Q Consensus 785 ~AA~~IQ~~~R~~~~R~~y 803 (1530)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777766
No 115
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.43 E-value=0.041 Score=39.82 Aligned_cols=20 Identities=55% Similarity=0.943 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 000419 759 RKAAIVLQSYWRGILACKLY 778 (1530)
Q Consensus 759 r~a~i~IQ~~~Rg~laRk~~ 778 (1530)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888877776
No 116
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.42 E-value=6.2 Score=41.42 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhHH
Q 000419 1027 LQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 1027 L~~~~~~Le~~i~eLe 1042 (1530)
|.......+.++.++.
T Consensus 120 le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 120 LEQERDQWEEKYEELE 135 (143)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3333333333333333
No 117
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.40 E-value=1.1 Score=54.21 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000419 1019 DTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1019 ~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
..+.+..+++....+..+.+.|-++++..++.
T Consensus 272 ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 272 QLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444455555555555555565555553
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.39 E-value=4.9 Score=47.75 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=5.6
Q ss_pred cccChHHHHH
Q 000419 669 TRRTFYEFLH 678 (1530)
Q Consensus 669 ~r~~~~~F~~ 678 (1530)
.+++..+|++
T Consensus 8 ~~isL~dFL~ 17 (312)
T smart00787 8 EPISLQDFLN 17 (312)
T ss_pred CCccHHHHHH
Confidence 3555566665
No 119
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.30 E-value=1.2 Score=50.11 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000419 980 AEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1530)
Q Consensus 980 ~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~~~ 1054 (1530)
.+...|+.+...+.+.++.+++...++..++......+.-+|.++....+.+..|+.++..++.++++..+.+..
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555566666666666666665555666677788888888889999999999999999887776543
No 120
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.28 E-value=14 Score=44.33 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=6.5
Q ss_pred HHhHHHHHHHHHHH
Q 000419 1038 LCNSESENQVIRQQ 1051 (1530)
Q Consensus 1038 i~eLe~e~~~lkq~ 1051 (1530)
..+|+.+..++|++
T Consensus 405 e~eleqevkrLrq~ 418 (502)
T KOG0982|consen 405 EIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHHhccc
Confidence 33444444444444
No 121
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.22 E-value=40 Score=48.24 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000419 887 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEA 958 (1530)
Q Consensus 887 L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~eel 958 (1530)
|......+..+...++..+...+.....++....+...+++.++.+|+..+..+...++++...++.....+
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~ 835 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSL 835 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455555555555555544443333344443445556666666666666666665555554444443333
No 122
>PRK01156 chromosome segregation protein; Provisional
Probab=94.13 E-value=35 Score=47.16 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000419 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1017 L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
+++...++..+.+....++.++.+++.....++.
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666555553
No 123
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.10 E-value=4.1 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 882 RETGALKEAKDKLEKRVEELTWRLQF 907 (1530)
Q Consensus 882 ~~~~~L~~~~~~Le~el~eL~~~l~~ 907 (1530)
..+..|+..+.-|++++++|+.+...
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~k 356 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKITK 356 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhhh
Confidence 34455666666677777777665443
No 124
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.06 E-value=12 Score=50.63 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 879 MAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNL 915 (1530)
Q Consensus 879 ~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~l 915 (1530)
+..+.+....+.+.+++.++.+++..++..++....+
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777777777766655444333
No 125
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.03 E-value=27 Score=45.50 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000419 887 LKEAKDKLEKRVEELTWRLQ 906 (1530)
Q Consensus 887 L~~~~~~Le~el~eL~~~l~ 906 (1530)
++.....|.+++..+..+++
T Consensus 85 Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 126
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.01 E-value=6.4 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 000419 1028 QESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1028 ~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
|..+.+||.++.+|.-|...+-|
T Consensus 200 Q~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 200 QAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 127
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.96 E-value=7.7 Score=51.28 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=18.1
Q ss_pred hHhHHHHHHHHHHHHH-HHHhcCCCHHHHHHH
Q 000419 1319 IAHWQSIVKSLNSYLK-TMKVNYVPPFLVRKV 1349 (1530)
Q Consensus 1319 ~~~~~~il~~L~~~~~-~L~~~~v~~~l~~Q~ 1349 (1530)
+.+++.+-+-+..=.. .++..+|++.+++|+
T Consensus 834 p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y 865 (1072)
T KOG0979|consen 834 PTTMDELDQAITDELTRALKFENVNEDAVQQY 865 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3455555554444444 667777887766553
No 128
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.95 E-value=0.35 Score=57.52 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=73.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc-CCCcccchhhHHHhchhHHHHHHhhcCc
Q 000419 1318 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEYVKAGLAELEQWCYDATE 1396 (1530)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1396 (1530)
+...+.+++.+|..++... ...+|+.+..-+....|.+|+..+.+-|+.. -+..+-.--.++...|..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567899999999998554 5679999999999999999999999998754 3455555567889999999999998710
Q ss_pred --ccccchHHHhHHHHHHHHHHhcCCCCcCCHHHHHHccCCCCCHHHHHHHHhcCc
Q 000419 1397 --EYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYW 1450 (1530)
Q Consensus 1397 --~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ln~~Ql~kiL~~Y~ 1450 (1530)
...+.....|..++|.++||....-..--...++..-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 124566789999999999999753232311156556678999999999988874
No 129
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.74 E-value=7.3 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.2
Q ss_pred ccCCCEEEEecCCCCCCCCCC
Q 000419 621 NSTEPHYIRCVKPNNALRPAI 641 (1530)
Q Consensus 621 ~~t~~h~irCIkPN~~~~~~~ 641 (1530)
..|..+||.|=+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999977665543
No 130
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.74 E-value=10 Score=39.57 Aligned_cols=6 Identities=50% Similarity=0.650 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000419 897 RVEELT 902 (1530)
Q Consensus 897 el~eL~ 902 (1530)
.+..|.
T Consensus 25 ~v~~LE 30 (140)
T PF10473_consen 25 HVESLE 30 (140)
T ss_pred HHHHHH
Confidence 333333
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.72 E-value=18 Score=47.85 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000419 983 DSLKALLLSERQSAEEARKACMDA--EVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 983 ~~l~~~l~~le~~~~~leke~~~~--e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
..+..++..++.+++.+++++... ++....+.++++..+.++..++.+...+++++..++.+.+.+++
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444332 12334455555555555555555555555555555444444433
No 132
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.69 E-value=0.046 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=17 Score=41.80 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 883 ETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARK 953 (1530)
Q Consensus 883 ~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~ 953 (1530)
...+++.....++.++..|...++.......+ ...++.+++.+++.++.++++++..+.+..+.+..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~----~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDE----LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433322222 22355666666666666666666666555444433
No 134
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=9.1 Score=46.16 Aligned_cols=74 Identities=14% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 927 QDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1530)
Q Consensus 927 ~~~~~eLe~~lee~~~~l~~e~e~l~~~~eel~~~l~e~~~l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~ 1006 (1530)
.+.+.++..+-++...-+..++..++..+...+- +. +.-.++++++.++..+-+++..-++...+|..++..+
T Consensus 306 ~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~--e~-----~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 306 NKQMEELTQQWEDTRQPLLQKKLQLREELKNLET--ED-----EEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc--hH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 3333444444444444444555555554444321 10 0124455666666666666655555555555555444
Q ss_pred H
Q 000419 1007 E 1007 (1530)
Q Consensus 1007 e 1007 (1530)
.
T Consensus 379 p 379 (521)
T KOG1937|consen 379 P 379 (521)
T ss_pred C
Confidence 3
No 135
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.49 E-value=15 Score=40.72 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000419 982 VDSLKALLLSERQSAEEARKACMDAEVRN----TELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 982 ~~~l~~~l~~le~~~~~leke~~~~e~~~----~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
..+|...+..++.++...++.+..++..+ ......+..+..+...++.++..|..++..|..
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445554444444444444332 123333344444444444444444444444443
No 136
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.46 E-value=21 Score=42.52 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 971 DTEKIESLTAEVDSLKALLLSERQSAEE 998 (1530)
Q Consensus 971 ~~~~~~~Le~e~~~l~~~l~~le~~~~~ 998 (1530)
+...++.|+.|++.|+..+...++...+
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777766666555443
No 137
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=26 Score=43.34 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 976 ESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1530)
Q Consensus 976 ~~Le~e~~~l~~~l~~le~~~~~leke~~~~ 1006 (1530)
..|..++++++-.-..+-..+.+|+++...+
T Consensus 152 ~rlr~elKe~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 152 RRLRDELKEYKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3444555444443333444444444443333
No 138
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=33 Score=44.62 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000419 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1530)
Q Consensus 1010 ~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~~~ 1054 (1530)
.++...++++++.....+..++..+..+...++++++.++.+...
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555666667777777766543
No 139
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=15 Score=47.53 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 976 ESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 976 ~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
.+++.++..++++++.+-.+.......+..+......+..+....+.++..|++..+.....+.++-+....++
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 34444444444444444444444444444443333445556666777777777766666666666655555554
No 140
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.34 E-value=20 Score=41.77 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000419 924 AKLQDALQAMQ 934 (1530)
Q Consensus 924 ~~L~~~~~eLe 934 (1530)
..++..++.++
T Consensus 110 ~~ler~i~~Le 120 (294)
T COG1340 110 KSLEREIERLE 120 (294)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.33 E-value=0.55 Score=52.03 Aligned_cols=60 Identities=27% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000419 989 LLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1530)
Q Consensus 989 l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~l 1048 (1530)
+..++..+..++.+...++..+.+....++.+.+++..|+-+...+++++..++.||..|
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444555555555555666666666666666554
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.19 E-value=9.5 Score=45.40 Aligned_cols=15 Identities=0% Similarity=0.135 Sum_probs=7.3
Q ss_pred HHHhHHHHHHHHHHH
Q 000419 1037 KLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1037 ~i~eLe~e~~~lkq~ 1051 (1530)
++..|+.....+.+.
T Consensus 272 Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 272 EIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555443
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.15 E-value=17 Score=40.49 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000419 968 IVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED-TEEKVGQLQESMQRLEEKLCNSESEN 1045 (1530)
Q Consensus 968 l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~-~e~~~~~L~~~~~~Le~~i~eLe~e~ 1045 (1530)
+...+.....+++++..++-+.+.++.++.+++.+..++....+....++.. ..-+..-|++.+..|.+.+..-+.++
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566667777788888877888888888777777766554443333322 22233334445555554444444443
No 144
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.02 E-value=23 Score=41.56 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000419 1027 LQESMQRLEE 1036 (1530)
Q Consensus 1027 L~~~~~~Le~ 1036 (1530)
|.+.+..|+.
T Consensus 183 L~Kqm~~l~~ 192 (310)
T PF09755_consen 183 LWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 145
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.96 E-value=25 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHHHHHHhhcCCC
Q 000419 1036 EKLCNSESENQVIRQQALAMSPT 1058 (1530)
Q Consensus 1036 ~~i~eLe~e~~~lkq~~~~~~~~ 1058 (1530)
.+|..|+.|-.+|+-=.-.--||
T Consensus 190 kkiakLEaEC~rLr~l~rk~lpg 212 (769)
T PF05911_consen 190 KKIAKLEAECQRLRALVRKKLPG 212 (769)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 37888888888887654443344
No 146
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.91 E-value=6.1 Score=47.23 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHH
Q 000419 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEE-------KVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 971 ~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~-------~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
.+...+.|+.+..++...+..+...++++..+...+...++.+..++..+++ .+.+.+++...-++-+.+|-.
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrk 381 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRK 381 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555666777777777777777777777766666655555554444444333 344455566666666667777
Q ss_pred HHHHHHHH
Q 000419 1044 ENQVIRQQ 1051 (1530)
Q Consensus 1044 e~~~lkq~ 1051 (1530)
+++.++.-
T Consensus 382 elehlr~~ 389 (502)
T KOG0982|consen 382 ELEHLRRR 389 (502)
T ss_pred HHHHHHHH
Confidence 77666643
No 147
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.63 E-value=31 Score=42.20 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLE 1035 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le 1035 (1530)
..++++++...-..|...+.+++
T Consensus 222 ~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 222 DQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 148
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.63 E-value=14 Score=48.01 Aligned_cols=14 Identities=7% Similarity=0.085 Sum_probs=9.7
Q ss_pred ecccchhhchhhHH
Q 000419 712 IGKTKVFLRAGQMA 725 (1530)
Q Consensus 712 iGkTkVF~r~~~~~ 725 (1530)
.|.|...|..+.-.
T Consensus 59 ~Ges~~~f~~w~~~ 72 (569)
T PRK04778 59 TGQSEEKFEEWRQK 72 (569)
T ss_pred CcccHHHHHHHHHH
Confidence 78888888765433
No 149
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.50 E-value=0.082 Score=54.06 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=20.9
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999887764
No 150
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=10 Score=49.88 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 866 RRRVARRE--LRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFR 943 (1530)
Q Consensus 866 R~~~arre--l~~Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~ 943 (1530)
|.+-.|++ ++-+++-......+.....-++.++.+|+..-++.+.=..--...+.-+..-...++.+...+++.+...
T Consensus 166 rvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 166 RVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred chhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 944 ILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEK 1023 (1530)
Q Consensus 944 l~~e~e~l~~~~eel~~~l~e~~~l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~ 1023 (1530)
...--++-.....++.+..++ +.....++.+|+..+..+..+.+.++.+-.+.-++...++-....+++++.-.++.
T Consensus 246 r~~~~e~s~~~~~~~~~~~d~---~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~ 322 (1200)
T KOG0964|consen 246 RSSAPEESEQYIDALDKVEDE---SEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQ 322 (1200)
T ss_pred HhccchhhhhHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 1024 VGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1024 ~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
.+.....++.++.++.+-+.++..+..+
T Consensus 323 r~~~l~~l~~~~~ki~e~~~EL~~I~Pk 350 (1200)
T KOG0964|consen 323 RNLALHVLQKVKDKIEEKKDELSKIEPK 350 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhH
No 151
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.16 E-value=21 Score=38.99 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000419 1017 LEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 1017 L~~~e~~~~~L~~~~~~Le~~i~eLe 1042 (1530)
.....+.+..+++.+..++.++..++
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555444443
No 152
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=23 Score=42.93 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.2
Q ss_pred HhhcCCcccChHHHH
Q 000419 663 SCAGYPTRRTFYEFL 677 (1530)
Q Consensus 663 ~~~gyp~r~~~~~F~ 677 (1530)
...|||..+.|..|+
T Consensus 75 kdlgyrgD~gyqtfL 89 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL 89 (521)
T ss_pred HHcCCCcccchhhee
Confidence 456788777776654
No 153
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.02 E-value=16 Score=48.52 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=28.5
Q ss_pred CCCCeEEEeccceeEeecchhhhh-----ccccchHHHHHHHHhCCchhhhccCCCCC
Q 000419 541 SRTSFTISHYAGEVTYLADLFLDK-----NKDYVVAEHQVLLTASKCPFVSGLFPPLP 593 (1530)
Q Consensus 541 ~~~~F~i~Hyag~V~Y~~~gfl~k-----N~d~~~~~~~~ll~~s~~~~~~~lf~~~~ 593 (1530)
.+..|.+.|-||-=.=.. .|+.+ +.|.-..+.+..+...+.+.+..++...+
T Consensus 377 ~~~ryy~~H~~GvH~V~L-~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~~ 433 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL-PWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTKP 433 (717)
T ss_pred CCceEEEEecCccEEEEe-ccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccCC
Confidence 457899999999743344 36653 22222223333444444456666665433
No 154
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.99 E-value=0.11 Score=56.58 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=22.8
Q ss_pred HHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
+...+...+|+|.|++|+|||...+.+++++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456778999999999999999999988888764
No 155
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.95 E-value=32 Score=40.78 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 1024 VGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 1024 ~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
++.|-.++.-|.+++..+++|..-+++..
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777777777776666553
No 156
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.91 E-value=0.11 Score=52.85 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 157
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.80 E-value=38 Score=41.26 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 1016 ~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
.+..++.+--.|++.+..++..+.||.++++.+....
T Consensus 474 ~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L 510 (622)
T COG5185 474 RIKTEENKSITLEEDIKNLKHDINELTQILEKLELEL 510 (622)
T ss_pred HHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHH
Confidence 3444444444477777777777777777777666553
No 158
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.74 E-value=9 Score=43.34 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1530)
Q Consensus 973 ~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~ 1006 (1530)
..+.-|+.++...+..++.++..+..++.++...
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666655555554433
No 159
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.63 E-value=51 Score=42.46 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 896 KRVEELTWRLQFEKQLRTNLEEEK 919 (1530)
Q Consensus 896 ~el~eL~~~l~~e~~~~~~le~~k 919 (1530)
.+.++|+..+...+..+..+++..
T Consensus 115 aEae~Lraala~ae~~R~~lEE~~ 138 (739)
T PF07111_consen 115 AEAEELRAALAGAEVVRKNLEEGS 138 (739)
T ss_pred hhHHHHHHHHhhHHHHHHhhHHHH
Confidence 344455544444444444444433
No 160
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.62 E-value=16 Score=47.95 Aligned_cols=11 Identities=18% Similarity=-0.025 Sum_probs=4.8
Q ss_pred eehHHHHHHHH
Q 000419 1182 AYWLSNSSTLL 1192 (1530)
Q Consensus 1182 ayWLSN~~~Ll 1192 (1530)
.-|.+-...|-
T Consensus 394 ~~~~~e~q~L~ 404 (717)
T PF09730_consen 394 DRLESEVQNLK 404 (717)
T ss_pred HHHHHHHHHHH
Confidence 34544444443
No 161
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.62 E-value=64 Score=43.52 Aligned_cols=83 Identities=12% Similarity=0.192 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000419 968 IVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA-EVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1530)
Q Consensus 968 l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~-e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~ 1046 (1530)
+++++..++.++.+++.++..-......++.. +++..- ....++...++.+.+.....+-+++.+|...+..++..++
T Consensus 809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie 887 (1141)
T KOG0018|consen 809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIE 887 (1141)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 34445555555555555555444444433333 111110 1223445555556666666666777777777776666666
Q ss_pred HHHHH
Q 000419 1047 VIRQQ 1051 (1530)
Q Consensus 1047 ~lkq~ 1051 (1530)
+....
T Consensus 888 ~~~~e 892 (1141)
T KOG0018|consen 888 RKESE 892 (1141)
T ss_pred HHHHH
Confidence 55443
No 162
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.42 E-value=0.15 Score=46.35 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 163
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.26 E-value=0.14 Score=55.80 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEecCCCCCCchhhhHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+.|+|.|.||||||+.++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999877765
No 164
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.13 E-value=13 Score=38.49 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000419 1020 TEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1020 ~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq 1050 (1530)
.+.+...|++++..++.++.+|..+|.-|-.
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666666666666655543
No 165
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.13 E-value=34 Score=39.38 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 1022 EKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1022 ~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
.++..-.+.++.++++|..|+.+++.|...
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555555544
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.10 E-value=0.25 Score=50.71 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred cCCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 33567999999999999999999988775
No 167
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=16 Score=47.23 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=8.7
Q ss_pred eEeecchhhhhccccc
Q 000419 554 VTYLADLFLDKNKDYV 569 (1530)
Q Consensus 554 V~Y~~~gfl~kN~d~~ 569 (1530)
|.|.-..|+-+|-|-=
T Consensus 390 v~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 390 VLYCFRSYLYDNDDGQ 405 (970)
T ss_pred HHHHHHHHHhcchhhH
Confidence 5555555555555543
No 168
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.06 E-value=26 Score=44.79 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=14.5
Q ss_pred CCCcccchhhHHHhchhHHHHHHhhcCc
Q 000419 1369 RECCSFSNGEYVKAGLAELEQWCYDATE 1396 (1530)
Q Consensus 1369 ~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1396 (1530)
++..-|++ .++-.|+.+.|.
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 46677887 456679998874
No 169
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.04 E-value=34 Score=42.47 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000419 981 EVDSLKALLLSERQSAEEARK 1001 (1530)
Q Consensus 981 e~~~l~~~l~~le~~~~~lek 1001 (1530)
++..++.++.+++..+.+++.
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 170
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.04 E-value=0.21 Score=58.17 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999998877664
No 171
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.02 E-value=0.3 Score=50.40 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
..+..|+++|++|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446689999999999999999888766
No 172
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.92 E-value=37 Score=39.58 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
...+..++..++..++.++..++..+..|..
T Consensus 219 ~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 219 LSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 173
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.85 E-value=63 Score=42.06 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000419 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 977 ~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
..+.|..+++-++++...+.+.+.-+++..++++..+.-.|+.-..++.+|.+-...|+..+..+..
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555566666666666666666666666656556666666666666655555555444433
No 174
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.64 E-value=0.15 Score=59.56 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568888999999999999999999874
No 175
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.55 E-value=7.4 Score=42.91 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000419 1015 KKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 1015 ~~L~~~e~~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
..++.....+.+++.....+.+.+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555554444443
No 176
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.49 E-value=1.5 Score=52.20 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 1016 ~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
.......+..+++++...++.++.-...++++|++..
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444555555555555555555566665543
No 177
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.42 E-value=17 Score=44.54 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000419 1019 DTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1530)
Q Consensus 1019 ~~e~~~~~L~~~~~~Le~~i~eLe~e~ 1045 (1530)
...+.-.+++.+.++++++-.|...+.
T Consensus 265 ~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 265 AYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555444444433
No 178
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.35 E-value=46 Score=39.68 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 976 ESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1530)
Q Consensus 976 ~~Le~e~~~l~~~l~~le~~~~~leke~~~~ 1006 (1530)
..+...+..++.++..++..+..|+..+..+
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3333333444444444444444444444333
No 179
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.24 E-value=23 Score=45.27 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 000419 971 DTEKIESLTAEVDSLKA 987 (1530)
Q Consensus 971 ~~~~~~~Le~e~~~l~~ 987 (1530)
...+..+++.++..+..
T Consensus 252 l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 252 LDGRIEALEKQLDALRL 268 (498)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 180
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.20 E-value=64 Score=41.10 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=8.1
Q ss_pred HHHhHHHHHHHHHHH
Q 000419 1037 KLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1037 ~i~eLe~e~~~lkq~ 1051 (1530)
...+++.|+..|++=
T Consensus 345 DYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 345 DYEEIKKELSILKAI 359 (629)
T ss_pred cHHHHHHHHHHHHHh
Confidence 334555666666654
No 181
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.18 E-value=0.41 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.3
Q ss_pred hcCCCeEEEecCCCCCCchhhhHHHHHHHHHhhC
Q 000419 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1530)
..++..-|.|+|.||||||+.++.+...|..-++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467889999999999999999999999887554
No 182
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.14 E-value=0.19 Score=51.28 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.5
Q ss_pred EEecCCCCCCchhhhHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1530)
|+|.|++|+|||..++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 183
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.13 E-value=0.29 Score=58.35 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.4
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+.+...+. .|||+|..|||||++.+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999988854
No 184
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.12 E-value=0.22 Score=49.32 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.6
Q ss_pred CCeEEEecCCCCCCchhhhHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~ 170 (1530)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999876
No 185
>PRK06696 uridine kinase; Validated
Probab=90.11 E-value=0.35 Score=54.81 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 134 ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+|+..+.. ..+..--|.|+|.||||||+.|+.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555442 3556778999999999999999999998854
No 186
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.03 E-value=3.6 Score=45.83 Aligned_cols=77 Identities=9% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
...+.++++|+.+++++++++....++.. .+++.......+.+.+++.+..+|.+++..++.++..++.+++.++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~---~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRT---AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777766666655544322 223333333444455566666666777777777777777777666654
No 187
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.01 E-value=0.22 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.3
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
.+..|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3678999999999999999776663
No 188
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.98 E-value=0.2 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.3
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999998888753
No 189
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.98 E-value=0.24 Score=55.40 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999988876
No 190
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.95 E-value=0.2 Score=55.78 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999888865
No 191
>PTZ00121 MAEBL; Provisional
Probab=89.93 E-value=1e+02 Score=42.95 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=24.8
Q ss_pred CcccCCCCCChHHHHHHHHHHhccCccccccCC
Q 000419 65 DDMTKLSYLHEPGVLHNLAARYELNEIYTYTGN 97 (1530)
Q Consensus 65 ~Dl~~l~~l~e~~vL~~L~~Ry~~~~iYT~~G~ 97 (1530)
=|||.=...++..++.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 378777777777777777777777788988774
No 192
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.91 E-value=0.2 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.9
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999988765
No 193
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.85 E-value=73 Score=41.19 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000419 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 1012 ~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
.+...++.+++....|.....-|.-.+..|..
T Consensus 246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~ 277 (739)
T PF07111_consen 246 ELLETVQHLQEDRDALQATAELLQVRVQSLTD 277 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555545444444
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.78 E-value=10 Score=45.89 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=5.3
Q ss_pred HHHHHhhcCCcc
Q 000419 659 AIRISCAGYPTR 670 (1530)
Q Consensus 659 ~iri~~~gyp~r 670 (1530)
-|||-|.|-|.|
T Consensus 104 ~irivRd~~pnr 115 (493)
T KOG0804|consen 104 DIRIVRDGMPNR 115 (493)
T ss_pred eeEEeecCCCce
Confidence 334444444444
No 195
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.73 E-value=35 Score=42.40 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACM 1004 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~ 1004 (1530)
+.+...++.++..++.++..++..+..++.++.
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555444433
No 196
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=89.72 E-value=0.38 Score=59.38 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 131 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 131 Hi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
.++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 344555566777766788999999999999999998877654
No 197
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.65 E-value=0.22 Score=55.24 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999888776
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.61 E-value=4.1 Score=48.59 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+.+.+.+++|.+.+.+++.+++...+++.+++..++.+...+.+.-...-...+.++.+...++++...++.+......+
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544444333333322333333444444444444444444444444333
No 199
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.60 E-value=40 Score=37.87 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000419 970 HDTEKIESLTAEVDSLKA-----LLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 1044 (1530)
Q Consensus 970 ~~~~~~~~Le~e~~~l~~-----~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e 1044 (1530)
.+..++..|..|.+++-. .+++++.+++--+...+++....+++-.-++++-+.+...+..+--|++++.+.+.+
T Consensus 214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~ 293 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKE 293 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 345666777777766654 334444444433333334444444444455555556666666666666666666666
Q ss_pred HHHHHHH
Q 000419 1045 NQVIRQQ 1051 (1530)
Q Consensus 1045 ~~~lkq~ 1051 (1530)
++++++.
T Consensus 294 Iq~l~k~ 300 (330)
T KOG2991|consen 294 IQRLKKG 300 (330)
T ss_pred HHHHHHH
Confidence 6666554
No 200
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.58 E-value=47 Score=38.62 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
+......++.+++..-..-..+++.+..++.+|--|+++.
T Consensus 198 ~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQL 237 (305)
T PF14915_consen 198 IEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQL 237 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666666778888888888888888774
No 201
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.51 E-value=0.35 Score=56.23 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=26.1
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
+..+.... .-.|+|+|++|||||++.+.++.++.
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 34444322 33699999999999999999988874
No 202
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.49 E-value=29 Score=36.29 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000419 926 LQDALQAMQLQ 936 (1530)
Q Consensus 926 L~~~~~eLe~~ 936 (1530)
++..+..|+.+
T Consensus 22 le~~v~~LEre 32 (140)
T PF10473_consen 22 LEDHVESLERE 32 (140)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 203
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.43 E-value=91 Score=41.75 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 922 EIAKLQDALQAMQLQVEEANFRILKEQEAA 951 (1530)
Q Consensus 922 e~~~L~~~~~eLe~~lee~~~~l~~e~e~l 951 (1530)
.+..|+..++.|+..+.+-...+..+++++
T Consensus 393 ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444333333333333
No 204
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.43 E-value=0.23 Score=54.94 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.5
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHh
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
|-|+|.||||||+.|+.+-..|...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 6799999999999999999999754
No 205
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.43 E-value=0.35 Score=51.36 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.2
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998754
No 206
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=34 Score=42.47 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 882 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1530)
Q Consensus 882 ~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~ 917 (1530)
++++..++....|..++..++..+.+.+....++.+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlke 366 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKE 366 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666555444444444443
No 207
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.02 E-value=0.48 Score=57.10 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=35.7
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 117 ~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
..+|+-....++-.|-..+. ....+...+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~--~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVE--RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHH--HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45565554444433332222 233333445545799999999999999999988875
No 208
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=88.82 E-value=0.32 Score=54.39 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888999999999999988877653
No 209
>PRK01156 chromosome segregation protein; Provisional
Probab=88.74 E-value=1.2e+02 Score=42.07 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCH
Q 000419 1323 QSIVKSLNSYLKTMKVNYVPP 1343 (1530)
Q Consensus 1323 ~~il~~L~~~~~~L~~~~v~~ 1343 (1530)
...+..|+.+...|...+++.
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~ 752 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPA 752 (895)
T ss_pred HHHHHHHHHHHHHhhhccchH
Confidence 344555566666666665554
No 210
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.70 E-value=51 Score=37.92 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
..+.+....+.+.+|..++..|+.++..|..+....+
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 3444444555555555555555555555555554333
No 211
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.67 E-value=0.51 Score=51.84 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=29.3
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 126 GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 126 ~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+.++|-+.+.-.. +.+. ...|+|+|++|||||++.+.++.++
T Consensus 8 g~~~~~~~~~l~~----~v~~--g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 8 GTFSPLQAAYLWL----AVEA--RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCHHHHHHHHH----HHhC--CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455554443333 2333 4689999999999999999888766
No 212
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=88.63 E-value=7.5 Score=49.64 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=86.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCcccchhhHHHhchhHHHHHHhhcCcc
Q 000419 1318 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEE 1397 (1530)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~ 1397 (1530)
+.++....+..|...+..|+.. +++.....+..++..-|+..+++.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 3456677899999999999999 99999999999999999999999999976 56667778887777555444443
Q ss_pred cccchHHHhHHHHHHHHHHhcCCCCcCCH--------------HHHHHcc-CCCCCHHHHHHHHh
Q 000419 1398 YAGSAWDELKHIRQAVGFLVINQKPKKTL--------------NEITKEL-CPVLSIQQLYRIST 1447 (1530)
Q Consensus 1398 ~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-c~~Ln~~Ql~kiL~ 1447 (1530)
+......++..|.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44445579999999999999986554322 1222222 14788888888875
No 213
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.61 E-value=0.44 Score=56.96 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=35.2
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 117 MEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 117 ~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.++|+-+...++-.|--. .......... ..+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAAD--KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHH--HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356766666655333211 2233333333 346777779999999999999998765
No 214
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.52 E-value=0.28 Score=52.77 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999988765
No 215
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.47 E-value=50 Score=39.22 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000419 923 IAKLQDALQAMQLQVEEA 940 (1530)
Q Consensus 923 ~~~L~~~~~eLe~~lee~ 940 (1530)
+..|+.++++|..++.++
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 216
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.45 E-value=88 Score=40.30 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=5.5
Q ss_pred HHHHhHHHHHHHHH
Q 000419 1036 EKLCNSESENQVIR 1049 (1530)
Q Consensus 1036 ~~i~eLe~e~~~lk 1049 (1530)
..+..|+.++...+
T Consensus 337 ~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 337 SEVSSLEAELNKTR 350 (522)
T ss_pred hHHhhHHHHHHHHH
Confidence 33334444443333
No 217
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.42 E-value=85 Score=40.12 Aligned_cols=53 Identities=32% Similarity=0.300 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 889 EAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEAN 941 (1530)
Q Consensus 889 ~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~ 941 (1530)
+....+-.++.+|+..|...+...+.-+.....++..|+..++..+.+.+++.
T Consensus 580 ~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666544443333333334456666666666665555543
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.42 E-value=0.28 Score=49.72 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=23.9
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999888777543
No 219
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.41 E-value=0.6 Score=52.77 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999888753
No 220
>PRK08233 hypothetical protein; Provisional
Probab=88.40 E-value=0.26 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999998887763
No 221
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.36 E-value=42 Score=36.55 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 000419 1022 EKVGQLQESMQRLEEKLCNSESE 1044 (1530)
Q Consensus 1022 ~~~~~L~~~~~~Le~~i~eLe~e 1044 (1530)
..+..|++..++|+.++.....+
T Consensus 165 RsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHH
Confidence 33444444444444444433333
No 222
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.34 E-value=0.32 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999988765
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.31 E-value=0.33 Score=52.70 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999988864
No 224
>PTZ00301 uridine kinase; Provisional
Probab=88.29 E-value=0.32 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEecCCCCCCchhhhHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1530)
|-|+|-||||||+.|+.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999988876653
No 225
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.12 E-value=0.34 Score=52.95 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.7
Q ss_pred EEecCCCCCCchhhhHHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888863
No 226
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.99 E-value=0.34 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEecCCCCCCchhhhHHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999998887753
No 227
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=87.98 E-value=32 Score=40.62 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000419 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1530)
Q Consensus 1011 ~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~ 1046 (1530)
..+.+.++..+..+.+-+.+.++|.....+|...+.
T Consensus 445 ahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 445 AHLAQALEAERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 345566666666677777777777666666554443
No 228
>PRK06547 hypothetical protein; Provisional
Probab=87.91 E-value=0.66 Score=50.34 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.1
Q ss_pred cCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 146 EGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.....-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5667889999999999999999887754
No 229
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=87.80 E-value=0.87 Score=56.13 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHH
Q 000419 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 132 i~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 3444555666666678899999999999999999887775
No 230
>PRK07261 topology modulation protein; Provisional
Probab=87.77 E-value=0.37 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999876544
No 231
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=87.75 E-value=0.3 Score=54.97 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.8
Q ss_pred EEEecCCCCCCchhhhHH
Q 000419 151 SILVSGESGAGKTETTKM 168 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~ 168 (1530)
-|||||-||||||++.+.
T Consensus 3 lvIVTGlSGAGKsvAl~~ 20 (286)
T COG1660 3 LVIVTGLSGAGKSVALRV 20 (286)
T ss_pred EEEEecCCCCcHHHHHHH
Confidence 489999999999998664
No 232
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.71 E-value=51 Score=36.76 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=6.8
Q ss_pred HHHHHHhHHHHHHH
Q 000419 1034 LEEKLCNSESENQV 1047 (1530)
Q Consensus 1034 Le~~i~eLe~e~~~ 1047 (1530)
|+.++..+.+.++.
T Consensus 148 LEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 148 LEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.63 E-value=5.5 Score=43.45 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000419 979 TAEVDSLKALLLSERQSAE 997 (1530)
Q Consensus 979 e~e~~~l~~~l~~le~~~~ 997 (1530)
.+++..++.++.+.+++++
T Consensus 155 ~~eleele~e~ee~~erlk 173 (290)
T COG4026 155 LKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 234
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.55 E-value=0.44 Score=51.65 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.5
Q ss_pred EEEecCCCCCCchhhhHHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1530)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 235
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.50 E-value=6.6 Score=43.52 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000419 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1530)
Q Consensus 974 ~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~ 1046 (1530)
+.......+..++.++..++.++..++.++.+....++.+..++..+.-+.+.+++...+|+.+-.+|-+..-
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555555555555555555555555555555544443
No 236
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.48 E-value=0.71 Score=54.73 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
...|+|+|..|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998864
No 237
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.46 E-value=0.17 Score=68.18 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 877 LKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK 919 (1530)
Q Consensus 877 Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k 919 (1530)
+..+...+..+++....|+.++.+|+..|+.++..+.+.+..+
T Consensus 27 ~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r 69 (859)
T PF01576_consen 27 LEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQR 69 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666777777777777777777776665555443
No 238
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.34 E-value=0.45 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.1
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999876643
No 239
>PRK06762 hypothetical protein; Provisional
Probab=87.29 E-value=0.48 Score=50.85 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.2
Q ss_pred eEEEecCCCCCCchhhhHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 240
>PRK08118 topology modulation protein; Reviewed
Probab=87.29 E-value=0.43 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
+-|+|.|.+|||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999998887753
No 241
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.26 E-value=0.4 Score=47.66 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHh
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999888754
No 242
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.20 E-value=21 Score=42.21 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1023 KVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1023 ~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
.+..+..+....+..+..+...+..-+
T Consensus 120 ~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 120 QLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 243
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.13 E-value=40 Score=34.90 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1530)
Q Consensus 1011 ~~l~~~L~~~e~~~~~L~~~~~~Le~~i~ 1039 (1530)
..+...+.+.+.++..|..++.-|..++.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666665554
No 244
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.99 E-value=66 Score=44.76 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 000419 1031 MQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1031 ~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+.+|.+.+.+...++..+.++
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~ 287 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQ 287 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 245
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.99 E-value=0.38 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.4
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999887754
No 246
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=86.97 E-value=63 Score=38.97 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCC---cceecccchhhchhh
Q 000419 696 VACEKILDKMGLK---GYQIGKTKVFLRAGQ 723 (1530)
Q Consensus 696 ~~~~~il~~~~~~---~~~iGkTkVF~r~~~ 723 (1530)
++++.|-..++-+ +.-+--+-=|+|...
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 4445555555432 455556666777653
No 247
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.89 E-value=38 Score=45.77 Aligned_cols=15 Identities=33% Similarity=0.111 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000419 833 KAAIIIEAYLRRHTA 847 (1530)
Q Consensus 833 ~aAi~IQ~~~R~~~~ 847 (1530)
.|+-+.-+....|+.
T Consensus 168 ~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 168 LAAAIPDAIAAAYIA 182 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555544
No 248
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=86.89 E-value=0.39 Score=55.51 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.4
Q ss_pred eEEEecCCCCCCchhhhHH
Q 000419 150 NSILVSGESGAGKTETTKM 168 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~ 168 (1530)
+-|||||-||||||++.+.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~ 20 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRA 20 (284)
T ss_pred eEEEEeCCCcCCHHHHHHH
Confidence 4699999999999997664
No 249
>PF05729 NACHT: NACHT domain
Probab=86.83 E-value=0.5 Score=50.11 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.4
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999888887643
No 250
>PRK00131 aroK shikimate kinase; Reviewed
Probab=86.64 E-value=0.53 Score=50.64 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999988876
No 251
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.59 E-value=0.37 Score=50.16 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999988875
No 252
>PF12846 AAA_10: AAA-like domain
Probab=86.57 E-value=0.5 Score=55.62 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.7
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999998888765
No 253
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.55 E-value=0.39 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.2
Q ss_pred CeEEEecCCCCCCchhhhHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
.+.|+|.|.||||||+..+.+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 357999999999999998887543
No 254
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.52 E-value=8.9 Score=34.00 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000419 998 EARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 998 ~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe 1042 (1530)
.+..++..+...+..+..+|++.+.+...|..++..|++++.++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555666777777888887777777777777776654
No 255
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.51 E-value=0.42 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998876653
No 256
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.49 E-value=0.43 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.3
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56799999999999999999988864
No 257
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.24 E-value=1.4e+02 Score=40.36 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 000419 1021 EEKVGQLQESMQRLEEKLCNSESEN 1045 (1530)
Q Consensus 1021 e~~~~~L~~~~~~Le~~i~eLe~e~ 1045 (1530)
+.+..+|+.+.+-.++....+....
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 258
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.21 E-value=1 Score=54.96 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=39.4
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 117 MEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 117 ~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.++|+-....++--|-..+. .++++... +-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46677666666643333332 34444443 5689999999999999999999999885
No 259
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.08 E-value=0.39 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|++.|.||||||+.++.+-+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6889999999999999988876
No 260
>PLN03025 replication factor C subunit; Provisional
Probab=86.03 E-value=0.86 Score=54.66 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=39.9
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 117 ~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.++|+-....++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567666655554443332 2355666666667899999999999999999988874
No 261
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.93 E-value=0.69 Score=55.61 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.1
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+.+.+ ..|+|+|+.|||||+..+.++.|+
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhC
Confidence 334444 459999999999999999888777
No 262
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.92 E-value=7.9 Score=48.59 Aligned_cols=32 Identities=9% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1018 EDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1018 ~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
+..+.++..|+.++.+-...+.+|+.++..++
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555544444
No 263
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.92 E-value=0.73 Score=56.23 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344677889999999999999999999998864
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.88 E-value=1.1 Score=51.29 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 136 a~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|-.+.+.+.......++++.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555555679999999999999999988877664
No 265
>PF13245 AAA_19: Part of AAA domain
Probab=85.80 E-value=0.89 Score=42.23 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+...+|.|..|+|||.+...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999888888888875
No 266
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.80 E-value=1.2e+02 Score=39.21 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1012 ELVKKLEDTEEKVGQ---LQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1012 ~l~~~L~~~e~~~~~---L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
.++.+++.++.++.+ |+.....|+-+..++..++.+-.
T Consensus 279 ~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 279 LLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355555555555544 45566667777777777665544
No 267
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.73 E-value=0.51 Score=57.26 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.4
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999865
No 268
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.72 E-value=0.76 Score=49.81 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
+...|+|.|-+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 269
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.62 E-value=28 Score=43.69 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=16.3
Q ss_pred cchhhHHHhchhHHHHHHhhcC
Q 000419 1374 FSNGEYVKAGLAELEQWCYDAT 1395 (1530)
Q Consensus 1374 ~s~G~qIr~nls~LE~W~~~~~ 1395 (1530)
-+.-+-++.-=+++-+|+++.+
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiD 727 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSID 727 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhcc
Confidence 3445566777788999999876
No 270
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=85.54 E-value=78 Score=39.81 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.7
Q ss_pred chhhhcCCC
Q 000419 507 LDEACMFPK 515 (1530)
Q Consensus 507 Ldee~~~p~ 515 (1530)
|+|||..+.
T Consensus 110 ~eee~~~s~ 118 (518)
T PF10212_consen 110 LEEECESSL 118 (518)
T ss_pred HHhhccccc
Confidence 344444433
No 271
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.53 E-value=0.57 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988877654
No 272
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.49 E-value=0.25 Score=66.63 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNT 1011 (1530)
Q Consensus 973 ~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~ 1011 (1530)
.....|..++..+..++.........++++...++..+.
T Consensus 349 K~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~ 387 (859)
T PF01576_consen 349 KTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLA 387 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333345555555555555555555555555444444333
No 273
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.49 E-value=1.2 Score=52.46 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=24.4
Q ss_pred cCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 146 EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+.+.-|-|+|.||||||++++.+...+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345677779999999999999988776654
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.48 E-value=0.52 Score=53.94 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
.+..++-+-||||+|||++.|.+++-+--.+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC
Confidence 4567888999999999999999998765433
No 275
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.40 E-value=7.4 Score=42.48 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000419 998 EARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 998 ~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe 1042 (1530)
+|.+++.+++.+.++.+.+|+.++.+..+|++..+.|..++..|+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 333333333333344444444444444444444443333333333
No 276
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.38 E-value=58 Score=42.36 Aligned_cols=28 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 883 ETGALKEAKDKLEKRVEELTWRLQFEKQ 910 (1530)
Q Consensus 883 ~~~~L~~~~~~Le~el~eL~~~l~~e~~ 910 (1530)
++..|+..+..|+.++.|....++..+.
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~ 455 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQS 455 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4556777777888887777666665443
No 277
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.29 E-value=0.61 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred EEecCCCCCCchhhhHHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|+|.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 278
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.18 E-value=0.47 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
--++-+-||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3477888999999999999999999763
No 279
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.06 E-value=0.46 Score=51.67 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEecCCCCCCchhhhHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998865
No 280
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=84.92 E-value=0.68 Score=48.77 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=22.3
Q ss_pred EEecCCCCCCchhhhHHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
++|+|++|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998876
No 281
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.88 E-value=0.6 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999875
No 282
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.88 E-value=1.5 Score=57.51 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 132 i~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
+-.|+.--...+...+.+.+++|+|..|.|||.+++++++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444443332233334555667899999999999999999988654
No 283
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.78 E-value=0.63 Score=51.84 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=20.8
Q ss_pred CeEEE--ecCCCCCCchhhhHHHHHHHH
Q 000419 149 SNSIL--VSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIi--isGeSGaGKTe~~k~~~~yla 174 (1530)
.++|| |+|-||||||+-||.+..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44444 699999999999998887774
No 284
>PRK12377 putative replication protein; Provisional
Probab=84.77 E-value=1.4 Score=50.81 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 130 PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3566665554444432 35799999999999999999999999753
No 285
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.74 E-value=84 Score=41.97 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1530)
Q Consensus 974 ~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~ 1039 (1530)
+...+..|...+-..+.+-..-+.++.+.....+.+...+..+|+..|.++..|+-++..+.+++.
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555566666666667777777888888888888888888877776555
No 286
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.71 E-value=0.69 Score=48.72 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEecCCCCCCchhhhHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1530)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988875
No 287
>PRK06315 type III secretion system ATPase; Provisional
Probab=84.68 E-value=1.3 Score=54.89 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
-.|...+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 152 i~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 152 VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 3344455556789999999999999999999888766
No 288
>PRK06217 hypothetical protein; Validated
Probab=84.59 E-value=0.6 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999888766
No 289
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=84.57 E-value=2.4 Score=52.43 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 133 ~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.|++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33445577777777899999999999999999998888754
No 290
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=84.49 E-value=2.7 Score=36.34 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=41.3
Q ss_pred ccccCcEEEEeCCCCCeEEEEEEEecC-CeEEEEeCC-CcEEEEeCCCccCCC
Q 000419 6 NIIVGSHVWVEHPELAWVDGEVFKISA-EEVHVHTTN-GQTVITNISKVFPKD 56 (1530)
Q Consensus 6 ~~~~g~~vw~~~~~~~w~~~~v~~~~~-~~~~~~~~~-g~~~~~~~~~~~~~~ 56 (1530)
.+.+|+.|=++..+..|..|+|+++.+ +.+.|...| |....++.+++.+.+
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899988887677899999999987 778888766 988888887776653
No 291
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=84.48 E-value=35 Score=39.48 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000419 978 LTAEVDSLKALLLSERQSAEE 998 (1530)
Q Consensus 978 Le~e~~~l~~~l~~le~~~~~ 998 (1530)
.-.|..-++.++..|.+++.-
T Consensus 113 WLEERR~lQgEmQ~LrDKLAi 133 (351)
T PF07058_consen 113 WLEERRFLQGEMQQLRDKLAI 133 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 292
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=84.46 E-value=0.69 Score=50.08 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.8
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
--|.|.|.||||||+..+.+++.|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 367899999999999999999998753
No 293
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.46 E-value=0.6 Score=54.50 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4689999999999999999988887653
No 294
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.41 E-value=1.1 Score=53.51 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=35.9
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 118 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 118 ~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
++|+-....++..|--++ ...+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~~--~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIV--ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHHH--HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 345444444444443322 3444555555445689999999999999999888764
No 295
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.39 E-value=1.7e+02 Score=39.78 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHhccCccccccCCeEEEeCCCCCCCCCCCHHHHHHhh
Q 000419 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYK 121 (1530)
Q Consensus 84 ~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~ 121 (1530)
.||..-.+-|----|+=++-|--.+++-|++++...-+
T Consensus 192 SrYS~~~PstgGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPSTGGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCCCCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 45655555342223566788888888889988766543
No 296
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.30 E-value=1.1 Score=55.87 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=38.4
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 118 ~~y~~~~~~~~--~PHi~ava~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.++|-+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46665555544 3555543 44444444 4788999999999999999999998865
No 297
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.18 E-value=0.61 Score=52.59 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.0
Q ss_pred EEEecCCCCCCchhhhHHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1530)
-+++-|+||||||++.|+|-+-+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 467789999999999999877553
No 298
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=84.17 E-value=0.52 Score=56.75 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.7
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999888763
No 299
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.06 E-value=0.69 Score=48.73 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 300
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=84.04 E-value=1.1e+02 Score=37.28 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=37.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 856 KAAVITQCGWRRRVARRELRNLKMA----ARETGALKEAKDKLEKRVEELTWRLQFEKQ 910 (1530)
Q Consensus 856 ~a~~~iQ~~~R~~~arrel~~Lk~e----a~~~~~L~~~~~~Le~el~eL~~~l~~e~~ 910 (1530)
++...+|+--.....++++.+++.+ ++..++++.....|+.++++++.+...++.
T Consensus 293 ~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s 351 (554)
T KOG4677|consen 293 REHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLES 351 (554)
T ss_pred HHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444556555555667788777765 667778888888888888877766554443
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=83.92 E-value=0.59 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhhHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1530)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999998876553
No 302
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=83.90 E-value=1.1 Score=57.37 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.5
Q ss_pred HhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.....++.|+|.||+|+|||..|+++.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999999887754
No 303
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.87 E-value=1.3e+02 Score=38.05 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.7
Q ss_pred HHHhhhHhhhHHHHHHHHHHHHHHHHH
Q 000419 799 ARTSYLTARSSAIQLQTGLRAMVARNE 825 (1530)
Q Consensus 799 ~R~~y~~lr~a~i~IQs~~Rg~laRk~ 825 (1530)
.|+.+..++.-+.+.|++.-++..++.
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhH
Confidence 455566666666677777766665543
No 304
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=83.73 E-value=1.1 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.0
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
.....+.+.+++|+|.+|+|||.+++.+++.+...
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33445677899999999999999999999988643
No 305
>PRK03846 adenylylsulfate kinase; Provisional
Probab=83.48 E-value=1.2 Score=49.57 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.5
Q ss_pred hcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
...+...|.|.|.||||||+.++.+.+.|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999988654
No 306
>PRK09099 type III secretion system ATPase; Provisional
Probab=83.43 E-value=1.9 Score=53.45 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
-.+...+..-++.|.+.|.|.||+|||+..+.+..+
T Consensus 151 i~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 151 VRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred ceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334555655678999999999999999988776654
No 307
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.39 E-value=1.3 Score=56.20 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=38.9
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 118 ~~y~~~~~~~~~--PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
++|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456555555553 4444432222 2345568999999999999999999999988653
No 308
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.33 E-value=1.6 Score=49.58 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999998887654
No 309
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.03 E-value=57 Score=39.32 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 1020 TEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 1020 ~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
-|-++.-++++.+..+.++.+..+..++++++-
T Consensus 345 ~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 345 HEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 455556677777788888888888888888773
No 310
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=83.00 E-value=0.84 Score=49.79 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+|.|.||||||+-||.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999874
No 311
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=82.97 E-value=0.96 Score=47.34 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998754
No 312
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.91 E-value=1.2 Score=55.97 Aligned_cols=57 Identities=26% Similarity=0.389 Sum_probs=39.7
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 118 ~~y~~~~~~~~~--PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
++|+-..+.++- +|+-..-..|+ ...+-+|+++++|..|.|||++++++-+.|-+..
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 466665555553 55544333332 2355689999999999999999999998886543
No 313
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=82.84 E-value=0.9 Score=49.11 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhhHHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|+|+|+.|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999888864
No 314
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.83 E-value=1.6 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999887743
No 315
>PLN02939 transferase, transferring glycosyl groups
Probab=82.80 E-value=41 Score=45.67 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=17.2
Q ss_pred HHHHHHhcCc-CCCCCCCCCCHHHHHHHHh
Q 000419 1441 QLYRISTMYW-DDKYGTHSVSSEVISSMRV 1469 (1530)
Q Consensus 1441 Ql~kiL~~Y~-~d~~e~~~v~~~~i~~l~~ 1469 (1530)
.+++-...|- |.-+| |.+-..+..|+.
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 4555555555 56665 677777888754
No 316
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=82.76 E-value=1.7e+02 Score=38.30 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 973 EKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1530)
Q Consensus 973 ~~~~~Le~e~~~l~~~l~~le~~~~~leke 1002 (1530)
++.++|+++...+...+..+++..+..+.+
T Consensus 351 dk~~eLEKkrd~al~dvr~i~e~k~nve~e 380 (1265)
T KOG0976|consen 351 DKLNELEKKRDMALMDVRSIQEKKENVEEE 380 (1265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 317
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=82.70 E-value=3.8 Score=51.03 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 133 ~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44566777777777899999999999999999888776643
No 318
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=82.59 E-value=0.8 Score=48.21 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.2
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999876653
No 319
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=82.53 E-value=1.9 Score=53.42 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcC-----------CCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 111 LYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 111 ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+.++..+..|-+...-..++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678888777655433334444455555555433321 24789999999999999999876543
No 320
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.49 E-value=0.96 Score=52.08 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEecCCCCCCchhhhHHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|-|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999888777743
No 321
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=82.49 E-value=0.69 Score=58.09 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
..+..=|-||||||||+++..||.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 56788899999999999999999998754
No 322
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.31 E-value=33 Score=34.67 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1010 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1010 ~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
..++.++++.++.++..|+++..++++++.+|+.++...-
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777788888888888888888888888887765543
No 323
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=82.30 E-value=1.7 Score=44.39 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999888877
No 324
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.26 E-value=1e+02 Score=35.54 Aligned_cols=10 Identities=40% Similarity=0.368 Sum_probs=3.7
Q ss_pred HHHhHHHHHH
Q 000419 1037 KLCNSESENQ 1046 (1530)
Q Consensus 1037 ~i~eLe~e~~ 1046 (1530)
.+.++..+++
T Consensus 176 ~~~~l~~~le 185 (247)
T PF06705_consen 176 KLSELRSELE 185 (247)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 325
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.17 E-value=43 Score=34.11 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000419 887 LKEAKDKLEKRVEELTWRLQ 906 (1530)
Q Consensus 887 L~~~~~~Le~el~eL~~~l~ 906 (1530)
+......++.++..+++++.
T Consensus 21 L~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433
No 326
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.16 E-value=0.88 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.2
Q ss_pred CCeEEEecCCCCCCchhhhHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
+---+.+.|.||||||+..|+|+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 344578999999999999998875
No 327
>PRK13764 ATPase; Provisional
Probab=82.08 E-value=1 Score=57.87 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.8
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 328
>PRK04182 cytidylate kinase; Provisional
Probab=82.07 E-value=0.86 Score=49.34 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.2
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999887654
No 329
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.04 E-value=1.1 Score=56.54 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334689999999999999988887774
No 330
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=81.97 E-value=0.96 Score=48.46 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.9
Q ss_pred CeEEEecCCCCCCchhhhHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877665
No 331
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.92 E-value=46 Score=37.90 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN 1010 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~ 1010 (1530)
..+.+.|..|.....+++....+.+..++..++..+.+.
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554444444333
No 332
>PHA00729 NTP-binding motif containing protein
Probab=81.92 E-value=1.8 Score=48.81 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
+.-..|+|+|.+|+|||..|..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999998764
No 333
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=81.92 E-value=1 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.1
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 334
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.90 E-value=1.9 Score=55.37 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=41.2
Q ss_pred HHHHhhccCcCCCCchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 116 MMEQYKGAQFGELSPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 116 ~~~~y~~~~~~~~~PHi~ava~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
..++|+-....++--|--.+ ..+..+. ..+-.+++|++|+.|.|||+.++.+-+.|-+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567666666554333332 3344444 44668999999999999999999999998654
No 335
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.83 E-value=26 Score=40.39 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000419 992 ERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1530)
Q Consensus 992 le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~l 1048 (1530)
++..+..|+.+......+...+..++.+.+.++..|..+...-+.+...++.++...
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444555566666666666666666666666666555443
No 336
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=81.76 E-value=1.1 Score=48.90 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.7
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999888764
No 337
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.69 E-value=1 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 338
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=81.68 E-value=1.8 Score=46.40 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 134 ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
+|...+...| ...+.-.|-++|-||||||+.+-.+=+.|...|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 4444443333 345667999999999999999999888887765
No 339
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.41 E-value=1.3 Score=56.23 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=42.6
Q ss_pred HHHHhhccCcCCCCchHHHHHHH--HHHHHHhcC-CCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 116 MMEQYKGAQFGELSPHVFAIADV--AYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 116 ~~~~y~~~~~~~~~PHi~ava~~--Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+++|+-....++.-|-=.|.+- ....|.... ..+-+|++|.+|+|||++.|.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 56778777788888887666543 344444443 35667789999999999999988766
No 340
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=81.36 E-value=1.1 Score=50.54 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46778889999999999999988776543
No 341
>PRK04040 adenylate kinase; Provisional
Probab=81.29 E-value=1 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhhHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.-|+|+|.+|+|||+.++.+.+.|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998888
No 342
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.28 E-value=1.2 Score=57.53 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=38.3
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 118 EQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 118 ~~y~~~~~~~~~--PHi~ava~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
++|+-..+.++- .|+-. ...++. ..+-.+++|++|.+|.|||++++++.+.|-+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456555554443 33332 233433 34568999999999999999999999998654
No 343
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.21 E-value=10 Score=42.20 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000419 1014 VKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 1052 (1530)
Q Consensus 1014 ~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~ 1052 (1530)
..+++..+.+...|+++.+.+..+.+.|.++..+++.+.
T Consensus 171 ~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 171 QKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555443
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=81.07 E-value=1.6 Score=54.23 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 130 PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.|+... ....+.+...+...+|++.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344332 3556677777778899999999999999999887654
No 345
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.05 E-value=1.1e+02 Score=34.86 Aligned_cols=28 Identities=14% Similarity=0.477 Sum_probs=18.5
Q ss_pred cchhhHHHHH----hhcCCcccChHHHHHHhh
Q 000419 654 GGVLEAIRIS----CAGYPTRRTFYEFLHRFG 681 (1530)
Q Consensus 654 ~gvle~iri~----~~gyp~r~~~~~F~~ry~ 681 (1530)
+|..+.+++. +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 3444444443 446999999999987654
No 346
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.89 E-value=1.1 Score=46.39 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999998877766
No 347
>PRK07667 uridine kinase; Provisional
Probab=80.84 E-value=1.9 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999998864
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=80.73 E-value=1.4 Score=47.65 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.7
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999998887654
No 349
>PRK12704 phosphodiesterase; Provisional
Probab=80.71 E-value=1.8e+02 Score=37.40 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHhc
Q 000419 1405 ELKHIRQAVGFLVI 1418 (1530)
Q Consensus 1405 ~L~~l~Qa~~lLq~ 1418 (1530)
.+..|+++++.|..
T Consensus 415 ~~a~IV~~ADaLsa 428 (520)
T PRK12704 415 IEAVLVAAADAISA 428 (520)
T ss_pred HHHHHHHHHHHHhC
Confidence 34556666665543
No 350
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.70 E-value=1.5 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.6
Q ss_pred EEEecCCCCCCchhhhHHHH
Q 000419 151 SILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~ 170 (1530)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766543
No 351
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.67 E-value=20 Score=32.77 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000419 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCN 1040 (1530)
Q Consensus 978 Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~e 1040 (1530)
|+.++..|+..+..+..++...+.....+..+.+.....|.+.-.++..|..++..|.+++.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554444445555555555555555555555555443
No 352
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=80.63 E-value=0.83 Score=57.37 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
+-.+.=|-||||||||+.+|.|+..+--
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4566778899999999999999887643
No 353
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.60 E-value=2.1 Score=54.72 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.2
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~~~--PHi~ava~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.++|+-..+.++- +|+... ...+.. .+-..++|++|+.|.|||+.++.+.++|-+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3566666655554 555543 333333 356788999999999999999999999865
No 354
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.57 E-value=26 Score=42.58 Aligned_cols=8 Identities=13% Similarity=0.688 Sum_probs=3.6
Q ss_pred CCCCCchh
Q 000419 638 RPAIFENA 645 (1530)
Q Consensus 638 ~~~~fd~~ 645 (1530)
.|..||.+
T Consensus 62 ~p~e~DDP 69 (359)
T PF10498_consen 62 QPQEYDDP 69 (359)
T ss_pred CCcccCCH
Confidence 34445543
No 355
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.56 E-value=1.9e+02 Score=37.60 Aligned_cols=6 Identities=33% Similarity=0.683 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000419 1034 LEEKLC 1039 (1530)
Q Consensus 1034 Le~~i~ 1039 (1530)
+.++|+
T Consensus 283 i~~~Id 288 (560)
T PF06160_consen 283 IEERID 288 (560)
T ss_pred HHHHHH
Confidence 333333
No 356
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=80.55 E-value=2.7 Score=44.04 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45667999999999999999999998864
No 357
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=80.51 E-value=1.8 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.6
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999887655
No 358
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.48 E-value=1.2e+02 Score=39.38 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1024 VGQLQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1024 ~~~L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
+..|+++...+++++.++-.++...|
T Consensus 348 le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333
No 359
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.47 E-value=2.2e+02 Score=38.26 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHc
Q 000419 607 SRFKLQLQSLMETLN 621 (1530)
Q Consensus 607 ~~f~~~l~~L~~~l~ 621 (1530)
..+-.++..|.+.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345677777888774
No 360
>PRK06761 hypothetical protein; Provisional
Probab=80.37 E-value=1 Score=52.53 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 361
>PRK15453 phosphoribulokinase; Provisional
Probab=80.30 E-value=1.2 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=19.5
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
+.=-|.|+|-||||||+.++.+-+-
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3346899999999999988765543
No 362
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.28 E-value=2 Score=56.12 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.6
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 334455678899999999999999999988775433
No 363
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.27 E-value=2e+02 Score=37.57 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.6
Q ss_pred hhhchh
Q 000419 717 VFLRAG 722 (1530)
Q Consensus 717 VF~r~~ 722 (1530)
+|+|..
T Consensus 21 ~~~rr~ 26 (569)
T PRK04778 21 LILRKR 26 (569)
T ss_pred HHHHHH
Confidence 444443
No 364
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.14 E-value=1.7e+02 Score=36.73 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=9.0
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 000419 1032 QRLEEKLCNSESENQVIRQ 1050 (1530)
Q Consensus 1032 ~~Le~~i~eLe~e~~~lkq 1050 (1530)
+.+..++-++..+.+.++.
T Consensus 441 qaevdrlLeilkeveneKn 459 (654)
T KOG4809|consen 441 QAEVDRLLEILKEVENEKN 459 (654)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3334444445555555554
No 365
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.09 E-value=1.5 Score=44.26 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=23.4
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHh
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
|+++|.+|+|||..+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999874
No 366
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.04 E-value=1.1 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.1
Q ss_pred CeEEEecCCCCCCchhhhHHH
Q 000419 149 SNSILVSGESGAGKTETTKML 169 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~ 169 (1530)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999987
No 367
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.04 E-value=1.4 Score=53.49 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=32.1
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie 188 (1530)
..|+|-+-|+|||||++..+++.||+-.-+|.-.-++..|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999766554333444554
No 368
>PRK06893 DNA replication initiation factor; Validated
Probab=80.03 E-value=2.5 Score=48.11 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
..+.+.+ ....+-++++.|.||+|||..+..+-+.+..-
T Consensus 28 ~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 28 DSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3333444 34566789999999999999999998887653
No 369
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=79.93 E-value=1.4 Score=49.01 Aligned_cols=47 Identities=26% Similarity=0.519 Sum_probs=28.8
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHHhhc-h----HHHhhcC
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESN-P----VLEAFGN 203 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~sn-p----ilEaFGN 203 (1530)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988865432 211 111234555566543 3 5666665
No 370
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.92 E-value=54 Score=37.99 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.0
Q ss_pred hhcCCcccChHHHH
Q 000419 664 CAGYPTRRTFYEFL 677 (1530)
Q Consensus 664 ~~gyp~r~~~~~F~ 677 (1530)
.-|||--++.+.|.
T Consensus 2 ~LGypr~iSmenFr 15 (267)
T PF10234_consen 2 ALGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCCcHHHcC
Confidence 35999888888775
No 371
>PRK14527 adenylate kinase; Provisional
Probab=79.92 E-value=1.5 Score=48.45 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999876663
No 372
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.91 E-value=2.3 Score=52.62 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 118 EQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 118 ~~y~~~~~~~~~PHi~ava~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
++|+-....+.--|-.++ ..++++... +-++++|++|+.|.|||+.++.+-++|-+
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345555555554444333 246666655 56789999999999999999999988864
No 373
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=79.89 E-value=60 Score=41.37 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=6.0
Q ss_pred ccCCCCCccccccc
Q 000419 1507 IADVEPPAVIRENS 1520 (1530)
Q Consensus 1507 ~~~~~~P~~l~~~~ 1520 (1530)
..-+.+|++=...|
T Consensus 784 ~~p~~lp~s~~~~~ 797 (811)
T KOG4364|consen 784 FSPRCLPPSTKPQP 797 (811)
T ss_pred cCcccCCCcCCCCc
Confidence 33444454444433
No 374
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.64 E-value=1.5e+02 Score=37.49 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 000419 1027 LQESMQRLEEKLCNSESENQVIR 1049 (1530)
Q Consensus 1027 L~~~~~~Le~~i~eLe~e~~~lk 1049 (1530)
...++..++.++..++.++...+
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554444433
No 375
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=79.59 E-value=1.1e+02 Score=34.24 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000419 1023 KVGQLQESMQRLEEKLC 1039 (1530)
Q Consensus 1023 ~~~~L~~~~~~Le~~i~ 1039 (1530)
.+...+-.+..|+..+.
T Consensus 169 ~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 169 SLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=79.56 E-value=2.8 Score=50.39 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999887643
No 377
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.55 E-value=2.6 Score=47.65 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcC--CCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 136 ADVAYRAMINEG--KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 136 a~~Ay~~m~~~~--~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
|-.|-..+.... ....++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 344445555443 23579999999999999888888777654
No 378
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=79.46 E-value=3.1 Score=51.71 Aligned_cols=41 Identities=15% Similarity=0.332 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 132 i~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
++.+.-.|...|..-++.|.+.|.|.||+|||+..+.+.++
T Consensus 151 ~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 151 PLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555567777777789999999999999999998877653
No 379
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.46 E-value=1.1e+02 Score=41.66 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=7.5
Q ss_pred cCCCHHHHHHHHHHHH
Q 000419 309 VGISEEEQDAIFRVVA 324 (1530)
Q Consensus 309 lg~~~~~~~~i~~ila 324 (1530)
+-.++.+|.+||.-++
T Consensus 102 VFGpes~Q~d~Y~~~v 117 (1041)
T KOG0243|consen 102 VFGPESQQEDLYDQAV 117 (1041)
T ss_pred eeCcchhHHHHHHHHH
Confidence 3334444555555433
No 380
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=79.37 E-value=1 Score=53.75 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.2
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
++.|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999888877543
No 381
>PRK08356 hypothetical protein; Provisional
Probab=79.32 E-value=1.1 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEecCCCCCCchhhhHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998854
No 382
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=79.23 E-value=1.4 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=19.2
Q ss_pred CeEEEecCCCCCCchhhhHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
-.-|+|+|+||+||||+|=-+++
T Consensus 145 GvGVLItG~SG~GKSElALeLi~ 167 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIK 167 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHH
Confidence 46799999999999999766554
No 383
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.18 E-value=1.3 Score=50.42 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.1
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
=.|+|-|-||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 35899999999999999999988864
No 384
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=79.15 E-value=1.7 Score=51.20 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 132 VFAIADVAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 132 i~ava~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
++....++...+... .+...|++.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555556555531 245689999999999999999999999765
No 385
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=79.05 E-value=1.5 Score=46.63 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997643
No 386
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.99 E-value=2.2e+02 Score=37.78 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000419 890 AKDKLEKRVEELT 902 (1530)
Q Consensus 890 ~~~~Le~el~eL~ 902 (1530)
....|+.++..++
T Consensus 35 ~i~~l~~elk~~~ 47 (717)
T PF09730_consen 35 RILELENELKQLR 47 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 387
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=78.98 E-value=1.3 Score=53.25 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+.+.+.|-|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999998877644
No 388
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=78.96 E-value=0.98 Score=58.17 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
.+.+.|.|.|+||||||+..|.+++++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999887653
No 389
>PRK00106 hypothetical protein; Provisional
Probab=78.90 E-value=1.2e+02 Score=39.07 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-
Q 000419 914 NLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSE- 992 (1530)
Q Consensus 914 ~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~eel~~~l~e~~~l~~~~~~~~~Le~e~~~l~~~l~~l- 992 (1530)
++...+....-.|-...++.++-++++..+-.+..++.+.+.++. ......+.+.+....+.++...
T Consensus 25 ~~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~------------~ke~~lEaeeEi~~~R~ElEkel 92 (535)
T PRK00106 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKAL------------KKELLLEAKEEARKYREEIEQEF 92 (535)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 993 --RQ-SAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 993 --e~-~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+. ++.+.+..+..-++.++.....|+..+.++...++++...++++.+.+.+.+.+.+.
T Consensus 93 ~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~ 154 (535)
T PRK00106 93 KSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 390
>PRK08116 hypothetical protein; Validated
Probab=78.80 E-value=3.2 Score=48.43 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 130 PHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 130 PHi~ava~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
.+.|+.|..--...... ..+..+++.|.+|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34556555544443322 345679999999999999999999998764
No 391
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=78.77 E-value=1.4e+02 Score=38.71 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000419 1330 NSYLKT 1335 (1530)
Q Consensus 1330 ~~~~~~ 1335 (1530)
+++|.+
T Consensus 720 dsFHr~ 725 (916)
T KOG0249|consen 720 DSFHRT 725 (916)
T ss_pred HHHHHH
Confidence 333333
No 392
>PRK08727 hypothetical protein; Validated
Probab=78.76 E-value=2.7 Score=48.04 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.4
Q ss_pred cCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
....+.|+++|.||+|||..+..+...+..-
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999888876653
No 393
>PRK04195 replication factor C large subunit; Provisional
Probab=78.75 E-value=1.9 Score=54.82 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 337899999999999999999887765
No 394
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=78.75 E-value=1.5 Score=50.92 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
+..-.|++.|++|+|||..++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999886654
No 395
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=78.72 E-value=1.1 Score=53.40 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999888766
No 396
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=78.66 E-value=1.4 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999998877644
No 397
>PRK14528 adenylate kinase; Provisional
Probab=78.59 E-value=1.6 Score=48.05 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEEEecCCCCCCchhhhHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987665
No 398
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.53 E-value=0.66 Score=61.82 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 1012 ELVKKLEDTEEKVGQLQESMQRLEE 1036 (1530)
Q Consensus 1012 ~l~~~L~~~e~~~~~L~~~~~~Le~ 1036 (1530)
.+..++..++.+...+..+...|++
T Consensus 395 ~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 395 QLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333
No 399
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=78.50 E-value=1.7 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.0
Q ss_pred CCeEEEecCCCCCCchhhhHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
+++++++.|.||+|||.....++.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 458999999999999997666554
No 400
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.49 E-value=1.4 Score=49.72 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
...+.+.|.|+||||||+..|.++..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998887643
No 401
>PRK10646 ADP-binding protein; Provisional
Probab=78.37 E-value=3.4 Score=43.80 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.1
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4478999999999999999888877
No 402
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.34 E-value=89 Score=39.26 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKA-----QEIAKLQDALQAMQLQVEEANFRILKEQEAARKAI 955 (1530)
Q Consensus 881 a~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~-----~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ 955 (1530)
............-++.++.+++.++...+....+...+.. ........++.+++.++.....+......+.....
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 242 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSS 242 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred H-hCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 956 E-EAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR-NTELVKKLEDTEEKVGQLQESMQR 1033 (1530)
Q Consensus 956 e-el~~~l~e~~~l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~-~~~l~~~L~~~e~~~~~L~~~~~~ 1033 (1530)
. ..-..+-.-+.+.....+..+++.++..+...+..-.-.+..++.+++.++.. ..+..+-....+.....+......
T Consensus 243 ~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 322 (444)
T TIGR03017 243 GKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAE 322 (444)
T ss_pred CcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 000419 1034 LEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1034 Le~~i~eLe~e~~~lkq~ 1051 (1530)
++..+.+++.+...+...
T Consensus 323 l~~~l~~~~~~~~~l~~~ 340 (444)
T TIGR03017 323 LREALENQKAKVLELNRQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
No 403
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=78.33 E-value=4.5 Score=50.28 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 136 a~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 34456666667889999999999999999988777643
No 404
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=78.32 E-value=4.5 Score=33.60 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=32.7
Q ss_pred CcEEEEeCCC-CCeEEEEEEEec-CCeEEEEeCC-CcEEEEeCCCc
Q 000419 10 GSHVWVEHPE-LAWVDGEVFKIS-AEEVHVHTTN-GQTVITNISKV 52 (1530)
Q Consensus 10 g~~vw~~~~~-~~w~~~~v~~~~-~~~~~~~~~~-g~~~~~~~~~~ 52 (1530)
|+.|-++.++ ..|.+|+|.++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6777777654 899999999987 6678888755 88776665543
No 405
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=78.29 E-value=2.5 Score=50.47 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCCCchHHHHHHHHH----HHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 126 GELSPHVFAIADVAY----RAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 126 ~~~~PHi~ava~~Ay----~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+++|---+.+.... .....-.....|++.|-+|||||+.++.+-..|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456664334444433 333445678899999999999999999987654
No 406
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.28 E-value=2.1e+02 Score=36.75 Aligned_cols=153 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 000419 885 GALKEAKDKLEKRVEELTWRL-QFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVK 963 (1530)
Q Consensus 885 ~~L~~~~~~Le~el~eL~~~l-~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~eel~~~l~ 963 (1530)
..+.....+.+.-+.+..... +..++...+.+++......++++++++.+.++.....++.+..+.+.+..+.+
T Consensus 25 ~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~L----- 99 (514)
T TIGR03319 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESL----- 99 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000419 964 ETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1530)
Q Consensus 964 e~~~l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~ 1043 (1530)
..+.+.|+...+.+.....++++...++.....+....++... .|...+.+-.-+..-..+++.+...+-.
T Consensus 100 --------ekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a-~lt~~eak~~l~~~~~~~~~~~~~~~~~ 170 (514)
T TIGR03319 100 --------DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERIS-GLTQEEAKEILLEEVEEEARHEAAKLIK 170 (514)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 000419 1044 ENQVIRQQ 1051 (1530)
Q Consensus 1044 e~~~lkq~ 1051 (1530)
+.+..-+.
T Consensus 171 ~~~~~~~~ 178 (514)
T TIGR03319 171 EIEEEAKE 178 (514)
T ss_pred HHHHHHHH
No 407
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.28 E-value=2 Score=51.96 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 134 ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577888888888899999999999999999999998887754
No 408
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.23 E-value=3.5 Score=48.23 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 131 HVFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 131 Hi~ava~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
.+..+..++++.+.. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 456666666666542 23467899999999999999998888887554
No 409
>PF14992 TMCO5: TMCO5 family
Probab=78.22 E-value=1.4e+02 Score=34.74 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000419 979 TAEVDSLKALLLSERQSAEEARK 1001 (1530)
Q Consensus 979 e~e~~~l~~~l~~le~~~~~lek 1001 (1530)
+..+..+...+..++..+.+++.
T Consensus 115 k~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 115 KNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=78.20 E-value=1.4 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=20.5
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
..+.+.|.|++|||||+..+.+...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 5688999999999999987765443
No 411
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=78.18 E-value=1.8 Score=53.72 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=22.4
Q ss_pred hcCCCeEEEecCCCCCCchhhhHHHHH
Q 000419 145 NEGKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
.-++.|.+.|.|.||+|||+..+.+.+
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999998776544
No 412
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=78.14 E-value=1.5 Score=49.27 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888766543
No 413
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=78.13 E-value=1.5 Score=49.15 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 414
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=78.13 E-value=1.7 Score=47.59 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.4
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
..-|||+|.||||||+.++.+++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999888755
No 415
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=78.10 E-value=1.5 Score=49.24 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999887654
No 416
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=77.97 E-value=1.6 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
...+.+.|.|+||||||+..|.|+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999999999998887654
No 417
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=77.94 E-value=1.5 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999887644
No 418
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.91 E-value=1.4e+02 Score=40.71 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=13.9
Q ss_pred HhcCCCeEEEecCCCCCCchhh
Q 000419 144 INEGKSNSILVSGESGAGKTET 165 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~ 165 (1530)
+-.|-|.+|+..|..|+|||.|
T Consensus 124 Vl~GyNCTIFAYGQTGTGKTyT 145 (1041)
T KOG0243|consen 124 VLEGYNCTIFAYGQTGTGKTYT 145 (1041)
T ss_pred HhccCCceEEEecCCCCCceee
Confidence 3455666666666666666655
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=77.86 E-value=2 Score=51.42 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
+..+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999988544
No 420
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=93 Score=39.64 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~ 1006 (1530)
...++.|+.++..|+..+.+++..+.+|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 421
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.84 E-value=1.6 Score=50.42 Aligned_cols=78 Identities=28% Similarity=0.406 Sum_probs=50.0
Q ss_pred ccCccccccCCeEEEeCCCCCCCCCCCHHHHHHh--hccCc--CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 000419 87 ELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQY--KGAQF--GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGK 162 (1530)
Q Consensus 87 ~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y--~~~~~--~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGK 162 (1530)
.-|.-|++.|..=+-||-|+... -|+-- ++.- +-... -.+||=+..+++ ..+--|+|+|..||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~v-lR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYALV-LRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEEE-EeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCCCcH
Confidence 45668999998888888887543 11100 0000 00001 135665555432 3566799999999999
Q ss_pred hhhhHHHHHHHHH
Q 000419 163 TETTKMLMRYLAY 175 (1530)
Q Consensus 163 Te~~k~~~~yla~ 175 (1530)
|+|.--++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999854
No 422
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=77.82 E-value=2.8e+02 Score=39.14 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=18.4
Q ss_pred CeEEEecCCCCCCchhhhHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~ 170 (1530)
.--++|+|++|||||+....|.
T Consensus 30 ~~l~~I~G~tGaGKStildai~ 51 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999876655
No 423
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=77.81 E-value=2.7 Score=51.00 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 136 ADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 136 a~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34555555544 45899999999999999999999998865
No 424
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.78 E-value=2.7 Score=53.86 Aligned_cols=55 Identities=24% Similarity=0.443 Sum_probs=38.8
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~~~--PHi~ava~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.++|+-..+.++- +|+-.. +.++.. .+-.+++|++|++|.|||+.++.+.+.|-+
T Consensus 7 ~~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3566655555543 555543 333333 456789999999999999999999998854
No 425
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=77.78 E-value=1.4 Score=53.00 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+.+.+.|-||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 457899999999999999998877644
No 426
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=77.69 E-value=1.2 Score=58.82 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
...|.|-|.|+||||||+.+|+++.++.-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35789999999999999999999887654
No 427
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.66 E-value=2.3 Score=54.05 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=37.7
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 118 ~~y~~~~~~~~--~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
++|+-..+.++ ..|+.+.-..++. ..+-.++++++|++|+|||+.++.+.+.+-+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34554444444 3455443333332 34567899999999999999999999988653
No 428
>PRK13768 GTPase; Provisional
Probab=77.55 E-value=1.7 Score=50.20 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.3
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998643
No 429
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=77.53 E-value=1.7 Score=48.71 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888776543
No 430
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=77.53 E-value=1.7 Score=49.33 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999888765
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=77.49 E-value=2 Score=40.75 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCCchhhhHHHHHHHHHh
Q 000419 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
|+++|-.|+|||+++..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999873
No 432
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=77.49 E-value=2.6 Score=46.14 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
+..-.|+++|.||||||+.++.+..+|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 433
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=77.43 E-value=2.5 Score=49.79 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999888
No 434
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.41 E-value=1.3e+02 Score=33.95 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNT 1011 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~ 1011 (1530)
+.....++.++..++..+..++..+..|+.++..++....
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555556655555555544433
No 435
>PF13479 AAA_24: AAA domain
Probab=77.36 E-value=1.4 Score=49.59 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKML 169 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~ 169 (1530)
+++..|+|.|+||+|||..++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35788999999999999876643
No 436
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=77.34 E-value=2.9 Score=45.92 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 140 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
++++... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444 46799999999999999999999888864
No 437
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.34 E-value=1.7 Score=48.77 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888876543
No 438
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.27 E-value=13 Score=41.46 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 989 LLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1530)
Q Consensus 989 l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~ 1039 (1530)
...++++.++..+++...++....+.++.++...+-++|.++..+|++++.
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333333333333333344444444444455555555556656655655543
No 439
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=77.27 E-value=1.5 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.4
Q ss_pred CCeEEEecCCCCCCchhhhHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
..-+|.|.|.||+||++..|.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 346899999999999998776543
No 440
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.25 E-value=37 Score=33.42 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQR 1033 (1530)
Q Consensus 975 ~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~ 1033 (1530)
+..|+..++..+.....+....+.|+.....+..+.....+++.+++.++..+...++.
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333344333334444444444444444444444444433
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.25 E-value=1.8 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
+++|+|++|+|||..+-.++...+.-
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~ 26 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR 26 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 48999999999999887777766643
No 442
>PRK00698 tmk thymidylate kinase; Validated
Probab=77.24 E-value=2.1 Score=47.41 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999888543
No 443
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=77.24 E-value=7.8 Score=34.13 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=37.6
Q ss_pred cccccCcEEEEeC-CCCCeEEEEEEEecC-CeEEEEeCC---CcEEEEeCCCccCC
Q 000419 5 VNIIVGSHVWVEH-PELAWVDGEVFKISA-EEVHVHTTN---GQTVITNISKVFPK 55 (1530)
Q Consensus 5 ~~~~~g~~vw~~~-~~~~w~~~~v~~~~~-~~~~~~~~~---g~~~~~~~~~~~~~ 55 (1530)
+.+.+|+.|-+.. .+.+|-.|+|+++.+ +...|...+ |...++...++-|.
T Consensus 1 ~~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 1 SDFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPH 56 (61)
T ss_pred CCcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccC
Confidence 3578999998875 466899999999877 678888755 44566666655543
No 444
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=77.24 E-value=2.1 Score=45.85 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHHHhh
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~~ 177 (1530)
..|.|.|.||||||+.++.+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 445
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=77.23 E-value=1.6 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEecCCCCCCchhhhHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1530)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999888764
No 446
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.19 E-value=3.7e+02 Score=39.00 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.6
Q ss_pred eEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
-..+|+|.+|||||.+.-.++.||..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 467899999999999999999998764
No 447
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.16 E-value=3.1 Score=52.47 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=37.2
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 118 ~~y~~~~~~~~--~PHi~ava~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
++|+-+...++ .+|+ ....+.+... +-.+++|++|+.|.|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45665555544 4565 3344444444 45578999999999999999999887643
No 448
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=77.12 E-value=4.1 Score=50.79 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 133 ~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
|...-.+...+..-++.|.+.|.|.||+|||+..+.|+.+
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344455666666678999999999999999988776654
No 449
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.11 E-value=3 Score=53.14 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=40.8
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 117 MEQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~~~--PHi~ava~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.++|+-+.+.++- +||-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-+
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677766666653 55543 444444 4567899999999999999999999999865
No 450
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=77.04 E-value=1.6 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+.+.+-|-||||||||+.+|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467889999999999999999888755
No 451
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.99 E-value=37 Score=38.58 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000419 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1530)
Q Consensus 1013 l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~ 1051 (1530)
+..-++..+.+..+.+.....+.+++..|+++...++..
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555555444
No 452
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.98 E-value=2.2e+02 Score=36.33 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000419 1019 DTEEKVGQLQESMQRLEEKLCNSESE 1044 (1530)
Q Consensus 1019 ~~e~~~~~L~~~~~~Le~~i~eLe~e 1044 (1530)
+.+.+...|+.+.+..++....+...
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544444444444444333
No 453
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.97 E-value=2.5 Score=46.24 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=53.8
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHhhCCCCCCCccHHHHHH--hhchHHHh----hcCccccCCCCCCcccceEEEEEc
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVL--ESNPVLEA----FGNAKTVRNNNSSRFGKFVELQFD 224 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il--~snpilEa----FGNAkT~rN~NSSRfGk~~~l~f~ 224 (1530)
-||++|-.|||||+-+|.+-+-|-.-.-....-+..--.-++ +|-||++. |-+-++.|--.|-== -|+-| -|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VI-vD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVI-VD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEE-Ee
Confidence 389999999999999999999887533211000000000111 23333221 111111110000000 13333 45
Q ss_pred CCCccccceeeeeccccccccccCCCCccceeehhcc
Q 000419 225 KNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLC 261 (1530)
Q Consensus 225 ~~g~i~ga~i~~yLLEksRv~~q~~~ErnfHiFYql~ 261 (1530)
....+.|.+-+-|.+-|+|=+ +|-|-|..+
T Consensus 81 dtNYyksmRrqL~ceak~~~t-------t~ciIyl~~ 110 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKT-------TWCIIYLRT 110 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCC-------ceEEEEEcc
Confidence 567788888888888887764 577777665
No 454
>PRK00023 cmk cytidylate kinase; Provisional
Probab=76.96 E-value=1.7 Score=49.32 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988773
No 455
>PLN02796 D-glycerate 3-kinase
Probab=76.95 E-value=1.6 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEecCCCCCCchhhhHHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla 174 (1530)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 378899999999999998776653
No 456
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.89 E-value=3.1 Score=54.18 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=38.9
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 118 ~~y~~~~~~~~~--PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
++|+-..+.++- .|+...-..++ ...+..+++|++|++|.|||+.++.+.++|-+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456655555554 44444333333 234567899999999999999999999998643
No 457
>PRK06921 hypothetical protein; Provisional
Probab=76.84 E-value=2.3 Score=49.53 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
....+++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999998888877654
No 458
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=76.83 E-value=1.9 Score=55.61 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 129 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 129 ~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
+|-|.++-.++|.. +.++.-.|+++|-||||||+.++.+...|-.
T Consensus 374 rpeV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 374 FPEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34455555555543 4456669999999999999999999988865
No 459
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.82 E-value=2.7 Score=54.20 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=40.0
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~~--~PHi~ava~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.++|+-..+.++ .+|+-++ ++++...+ -.+++|++|+.|.|||++++.+-++|-+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456766655554 4666444 34444444 4899999999999999999999999864
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=76.81 E-value=1.7 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999988876544
No 461
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.75 E-value=1.8e+02 Score=35.17 Aligned_cols=21 Identities=33% Similarity=0.348 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000419 885 GALKEAKDKLEKRVEELTWRL 905 (1530)
Q Consensus 885 ~~L~~~~~~Le~el~eL~~~l 905 (1530)
..|.+...+|+.+..-|+.++
T Consensus 204 N~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444
No 462
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=76.73 E-value=1.7 Score=48.31 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
...+.+.|.|++|||||+..|.++..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999988877643
No 463
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=76.65 E-value=1.8 Score=50.97 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.0
Q ss_pred EEEecCCCCCCchhhhHHHHHHHHHhhC
Q 000419 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yla~~~~ 178 (1530)
.|++.|++|+|||..++.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 464
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.61 E-value=3.9 Score=50.03 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=42.8
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhhHHHHHHHHH
Q 000419 117 MEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 175 (1530)
.++|+-....++--|-.++ +..+..... .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677777777776665544 445555444 46789999999999999999999888765
No 465
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.57 E-value=1.9 Score=47.01 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
...+.+.|.|++|||||+..|.++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999988877643
No 466
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.55 E-value=2.9e+02 Score=37.48 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=17.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccc-CCCCCCcccccCCCC
Q 000419 1452 DKYGTHSVSSEVISSMRVLMTEDS-NNAVSSSFLLDDDSS 1490 (1530)
Q Consensus 1452 d~~e~~~v~~~~i~~l~~~~~~~~-~~~~~~~lllD~~~~ 1490 (1530)
|+-+ ++++|---+.|=..|-+-+ .++.+.-||+-++..
T Consensus 990 DEIN-QGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLL 1028 (1072)
T KOG0979|consen 990 DEIN-QGMDPRNERKVHDIMVNMACKENTSQYFLITPKLL 1028 (1072)
T ss_pred hhhh-cCCCchhHHHHHHHHHHHhhcCCCcceEEecchhc
Confidence 4444 4566554444422222111 223455577665554
No 467
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=76.49 E-value=5.4 Score=49.53 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 132 i~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
++...-.|...+..-++.|-+.|.|.||+|||+..+.++++
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCC
Confidence 44555566666777789999999999999999998877754
No 468
>PRK06835 DNA replication protein DnaC; Validated
Probab=76.46 E-value=4.1 Score=48.93 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHHHh
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 176 (1530)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999998888653
No 469
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=76.46 E-value=3 Score=55.32 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+...+...++++.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777888899999999999999999988765
No 470
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.44 E-value=3 Score=51.83 Aligned_cols=60 Identities=33% Similarity=0.438 Sum_probs=46.1
Q ss_pred HHHHHHhhccCcCCCCchHHHHHHH--HHH--HHHhc-CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 114 THMMEQYKGAQFGELSPHVFAIADV--AYR--AMINE-GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 114 ~~~~~~y~~~~~~~~~PHi~ava~~--Ay~--~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+-.+..|+-....++.-|-=.|++- +++ .|... -+++-.+|+|.||+|||+|.|.+-.-|
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4567889888889999998887753 555 33333 467889999999999999988765544
No 471
>PRK10698 phage shock protein PspA; Provisional
Probab=76.41 E-value=1.4e+02 Score=33.82 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN 1010 (1530)
Q Consensus 973 ~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~ 1010 (1530)
.....++.++...+..+..++..+..|+.++.+++...
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544443
No 472
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=76.41 E-value=3.3 Score=48.17 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 130 PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
|++=.+-+.+...+. .+..|++.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 555566666666555 3568999999999999999877653
No 473
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.41 E-value=2e+02 Score=35.50 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000419 399 ALAKTVYSRLFDWLV 413 (1530)
Q Consensus 399 alak~lY~~lF~wiv 413 (1530)
.|++.+|+-|=+|+-
T Consensus 51 Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 51 TLSEDIYSTLDNLLG 65 (527)
T ss_pred hhhHHHHhhhhhccC
Confidence 688888988877654
No 474
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.41 E-value=1.8 Score=49.50 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
...+.+.|.|+||||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888776543
No 475
>PRK10869 recombination and repair protein; Provisional
Probab=76.37 E-value=1.3e+02 Score=39.17 Aligned_cols=183 Identities=9% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 871 RRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKA--QEIAKLQDALQAMQLQVEEANFRILKEQ 948 (1530)
Q Consensus 871 rrel~~Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~--~e~~~L~~~~~eLe~~lee~~~~l~~e~ 948 (1530)
...+...+..-.....+.+....+.....+...+++..+-...++++..- .+.++|+.+.+.|... ++....+..-.
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~-e~i~~~~~~~~ 231 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANS-GQLLTTSQNAL 231 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHHHH-----HHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000419 949 EAARK-----AIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED---- 1019 (1530)
Q Consensus 949 e~l~~-----~~eel~~~l~e~~~l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~---- 1019 (1530)
..+.. ....+...+.....+.........+...+..+...+.++...+......+.--..+++.+.+++..
T Consensus 232 ~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L 311 (553)
T PRK10869 232 QLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISL 311 (553)
T ss_pred HHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000419 1020 ---------------------------TEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1530)
Q Consensus 1020 ---------------------------~e~~~~~L~~~~~~Le~~i~eLe~e~~~lkq~~~~ 1054 (1530)
.+..+..|+++...+.+++.++-.++...|+++..
T Consensus 312 ~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 312 ARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=76.37 E-value=4.8 Score=49.83 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
.|...+..-++.|.+.|.|.||+|||+..+.++++
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44445555578999999999999999988776654
No 477
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.31 E-value=2.2e+02 Score=35.93 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 000419 1158 TTVFDRIIQTIASAIE 1173 (1530)
Q Consensus 1158 ~~ll~~ii~~I~~~v~ 1173 (1530)
...+..-+..|+..|+
T Consensus 277 ~~~Lk~H~~svr~HI~ 292 (475)
T PRK10361 277 ESALQEHIASVRNHIR 292 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666767776664
No 478
>PRK10436 hypothetical protein; Provisional
Probab=76.26 E-value=1.7 Score=54.54 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCeEEEecCCCCCCchhhhHHHHHHHH
Q 000419 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~~~~yla 174 (1530)
..=-|+|+|..|||||+|...+++++.
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 345799999999999999988888864
No 479
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=76.17 E-value=1.7 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|-|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999988776655
No 480
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=76.16 E-value=2.7e+02 Score=36.88 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACM 1004 (1530)
Q Consensus 972 ~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~ 1004 (1530)
...+++++++.++++..+...+++++.++..+.
T Consensus 669 ~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R 701 (988)
T KOG2072|consen 669 ARQIEELEKERKELQSRLQYQEKKIDHLERAKR 701 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345668888888888888888888887766543
No 481
>PRK14531 adenylate kinase; Provisional
Probab=76.00 E-value=2.1 Score=46.91 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.8
Q ss_pred eEEEecCCCCCCchhhhHHHHHHH
Q 000419 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999988776
No 482
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=75.99 E-value=1.7 Score=47.56 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEecCCCCCCchhhhHHHHHHH
Q 000419 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~~~~yl 173 (1530)
-|||+|.||||||+.++.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999888774
No 483
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=75.98 E-value=1.8 Score=48.60 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~y 172 (1530)
...+.+.|.|+||||||+..|.++..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35788999999999999998877543
No 484
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.94 E-value=2e+02 Score=35.36 Aligned_cols=10 Identities=30% Similarity=0.072 Sum_probs=5.2
Q ss_pred cchHHHHHHH
Q 000419 604 SIGSRFKLQL 613 (1530)
Q Consensus 604 tv~~~f~~~l 613 (1530)
++...|+.|+
T Consensus 79 ~~s~~~i~q~ 88 (622)
T COG5185 79 SVSRLSINQL 88 (622)
T ss_pred hhhHHHHHhh
Confidence 4455555555
No 485
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=75.93 E-value=1.2 Score=46.36 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=19.5
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~ 171 (1530)
..+..|+|.||+|+||+..+++|-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678899999999999987765433
No 486
>PRK06936 type III secretion system ATPase; Provisional
Probab=75.91 E-value=2.4 Score=52.51 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 133 ~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
+...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 34444556666666789999999999999999888776654
No 487
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=75.85 E-value=1.2e+02 Score=32.83 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 000419 874 LRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFR---ILKEQEA 950 (1530)
Q Consensus 874 l~~Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~---l~~e~e~ 950 (1530)
+..||-....+-.|.-.+...+..+..+..+....+........+.......+-+...++..++..+..+ |.++.+-
T Consensus 3 isALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLey 82 (178)
T PF14073_consen 3 ISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 951 ARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQES 1030 (1530)
Q Consensus 951 l~~~~eel~~~l~e~~~l~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~ 1030 (1530)
++.++...+.+-.. ..+....++.+...-..++..-.++++.|+++...+.........++..+|.++..=+-+
T Consensus 83 MRkmv~~ae~er~~------~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehq 156 (178)
T PF14073_consen 83 MRKMVESAEKERNA------VLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQ 156 (178)
T ss_pred HHHHHHHHHHhhhH------HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHH
Q 000419 1031 MQRLEEKLCNSESENQV 1047 (1530)
Q Consensus 1031 ~~~Le~~i~eLe~e~~~ 1047 (1530)
..-+.++-.+|.-.++.
T Consensus 157 RKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 157 RKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHhhHHH
No 488
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=75.84 E-value=1.9 Score=49.77 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+++|-+|||||+.++.+-++|
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 489
>PRK05922 type III secretion system ATPase; Validated
Probab=75.81 E-value=2.3 Score=52.65 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred cCcEEEEeCCCCCeEEEEEEEecCCeEEEEeCCCcEEEEeCCCccCCCCCCCCCCCCcccCCCCCChHHHHHHHHHHhcc
Q 000419 9 VGSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAARYEL 88 (1530)
Q Consensus 9 ~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~l~~l~e~~vL~~L~~Ry~~ 88 (1530)
.|+.|+|..+...++.|+|+.++++.+.+..-++..-......+.+........--+++ .
T Consensus 40 ~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg~~l--------------------l 99 (434)
T PRK05922 40 LGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHL--------------------L 99 (434)
T ss_pred CCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcChhh--------------------c
Q ss_pred CccccccCCeEE---EeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000419 89 NEIYTYTGNILI---AINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTET 165 (1530)
Q Consensus 89 ~~iYT~~G~~Li---avNP~~~l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1530)
+.|+.-.|..|= .+++....| ++.+.. +......+-.++.+.-+|...+..-++.|-|.|.|.+|+|||+.
T Consensus 100 Grv~d~~G~pld~~~~~~~~~~~p-i~~~~~-----~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTL 173 (434)
T PRK05922 100 GRVLDGFGNPLDGKEQLPKTHLKP-LFSSPP-----SPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSL 173 (434)
T ss_pred CCEeCCCCCccCCCCCCCccceee-cccCCC-----ChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHH
Q ss_pred hHHHHHH
Q 000419 166 TKMLMRY 172 (1530)
Q Consensus 166 ~k~~~~y 172 (1530)
.+.+.++
T Consensus 174 L~~Ia~~ 180 (434)
T PRK05922 174 LSTIAKG 180 (434)
T ss_pred HHHHhcc
No 490
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=75.75 E-value=1.6 Score=56.87 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
.+.|.+.|.|+||||||+..|+++..+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
No 491
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=75.74 E-value=4.8 Score=49.42 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=0.0
Q ss_pred CHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCC---------eEEEecCCCCCCchhhhHHHHHHH
Q 000419 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKS---------NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~---------QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
++..+..|-+...-..+.=+-+++..+|.+..+.+-. ..|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
No 492
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=75.74 E-value=2.9e+02 Score=36.96 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000419 796 SYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARRELR 875 (1530)
Q Consensus 796 ~~~~R~~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQ~~~R~~~arrel~ 875 (1530)
.+..|..+...|.+.-.+++.+...-.| ....+.+---.|..|..++.-..+.+....-...-..--++--.+..+
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r----~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q 627 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGR----FAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQ 627 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 876 NLKMAARETGALKEAKDKLEKRVEELTWRLQ----------FEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRIL 945 (1530)
Q Consensus 876 ~Lk~ea~~~~~L~~~~~~Le~el~eL~~~l~----------~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~ 945 (1530)
...+....++.|.+.....+..+..+..-++ ...+.+...+..+......++..+.-.++...++++++.
T Consensus 628 ~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~ 707 (984)
T COG4717 628 KKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELE 707 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCcccccc-chhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000419 946 KEQEAARKAIEEAPPIVKET-PVIVHDTEKIESLTAEVDSLKALLL-----SERQSAEEARKACMDAEVRNTELVKKLED 1019 (1530)
Q Consensus 946 ~e~e~l~~~~eel~~~l~e~-~~l~~~~~~~~~Le~e~~~l~~~l~-----~le~~~~~leke~~~~e~~~~~l~~~L~~ 1019 (1530)
.-.++.....+.....-++. ...........+.+..+..+..++. +++-......++.. +++...+.+.++.
T Consensus 708 ~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~--e~E~~~lEe~~d~ 785 (984)
T COG4717 708 LHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK--EEELALLEEAIDA 785 (984)
T ss_pred HHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh--hHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 000419 1020 TEEKVGQLQESMQRLEEKLCNSE 1042 (1530)
Q Consensus 1020 ~e~~~~~L~~~~~~Le~~i~eLe 1042 (1530)
+.+++.++..++.-+..++..||
T Consensus 786 ~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 786 LDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 493
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=75.70 E-value=4.2 Score=50.20 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCC-------------CeEEEecCCCCCCchhhhHHHHHHH
Q 000419 108 LPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGK-------------SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 108 l~~ly~~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~-------------~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
++.+.++..+..+-+...-..+--+=+++...|++..+-+. .-+|++.|++|+|||+.+|.+-+.+
T Consensus 62 ~~~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 62 LSYLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ccCCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
No 494
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=75.67 E-value=2 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhhHHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yla 174 (1530)
++|.|.||||||...+.++.-++
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHHH
No 495
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.62 E-value=2 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1530)
...+.+.|.|+||||||+..|.+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=75.58 E-value=2 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhhHHHH
Q 000419 147 GKSNSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~~~ 170 (1530)
...+.+.|.|+||||||+..|.+.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 497
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.46 E-value=49 Score=35.03 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000419 969 VHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1530)
Q Consensus 969 ~~~~~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~~~~l~~~L~~~e~~~~~L~~~~~~Le~~i~eLe~e~~~l 1048 (1530)
+........+..++..++..+..++.+++.++.++...+.....+..++..++..+....+++.++...+..........
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 000419 1049 RQQ 1051 (1530)
Q Consensus 1049 kq~ 1051 (1530)
.++
T Consensus 135 ~rk 137 (151)
T PF11559_consen 135 LRK 137 (151)
T ss_pred HHH
No 498
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.46 E-value=3.9 Score=51.41 Aligned_cols=55 Identities=25% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCchhhhHHHHHHH
Q 000419 118 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 118 ~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 173 (1530)
++|+-..+.++--|--.+. .--..+...+-.+++|++|+.|.|||+.++.+.++|
T Consensus 9 ~kyRP~~~~diiGq~~~v~-~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA-VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH-HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
No 499
>PRK03839 putative kinase; Provisional
Probab=75.38 E-value=2 Score=46.75 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhhHHHHHHH
Q 000419 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~~~~yl 173 (1530)
|+|.|-+|||||+.++.+-+-+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 500
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.37 E-value=28 Score=37.61 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHH
Q 000419 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR--NTELVKKLEDTEEKVGQLQESMQRLEE--------KLCNSE 1042 (1530)
Q Consensus 973 ~~~~~Le~e~~~l~~~l~~le~~~~~leke~~~~e~~--~~~l~~~L~~~e~~~~~L~~~~~~Le~--------~i~eLe 1042 (1530)
++...+..++..+++++..++..+..++.++..+... .+++...+..++.++..++..+..|+. ++..++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~ 151 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLE 151 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHHH
Q 000419 1043 SENQVIRQ 1050 (1530)
Q Consensus 1043 ~e~~~lkq 1050 (1530)
.+......
T Consensus 152 ~~~~~~~k 159 (169)
T PF07106_consen 152 KEYKKWRK 159 (169)
T ss_pred HHHHHHHH
Done!