Query 000421
Match_columns 1530
No_of_seqs 573 out of 3141
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-240 5E-245 2226.5 99.8 1364 5-1472 4-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 9E-203 2E-207 1912.7 76.9 769 4-777 27-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 2E-187 4E-192 1754.8 66.5 674 62-735 1-674 (674)
4 KOG0160 Myosin class V heavy c 100.0 2E-186 5E-191 1714.1 64.6 754 58-824 4-758 (862)
5 KOG0161 Myosin class II heavy 100.0 8E-183 2E-187 1792.1 93.8 775 5-808 25-823 (1930)
6 cd01380 MYSc_type_V Myosin mot 100.0 5E-183 1E-187 1725.1 63.5 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 1E-182 2E-187 1713.9 64.0 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 2E-182 4E-187 1720.3 65.4 667 60-731 3-693 (693)
9 cd01378 MYSc_type_I Myosin mot 100.0 6E-181 1E-185 1702.0 63.8 662 63-731 1-674 (674)
10 cd01383 MYSc_type_VIII Myosin 100.0 6E-181 1E-185 1696.3 62.9 657 60-731 6-677 (677)
11 KOG0164 Myosin class I heavy c 100.0 8E-181 2E-185 1562.0 55.4 729 61-806 7-756 (1001)
12 cd01387 MYSc_type_XV Myosin mo 100.0 4E-180 1E-184 1691.6 63.9 661 62-731 1-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 1E-179 2E-184 1691.8 65.9 663 62-732 7-689 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 3E-179 6E-184 1693.6 65.1 664 60-730 2-715 (717)
15 KOG0163 Myosin class VI heavy 100.0 3E-175 6E-180 1512.5 79.6 789 8-813 2-842 (1259)
16 cd01379 MYSc_type_III Myosin m 100.0 3E-177 7E-182 1656.3 63.8 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 9E-176 2E-180 1664.3 65.1 668 60-732 4-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 1E-176 3E-181 1524.7 50.9 694 60-764 16-724 (1106)
19 cd00124 MYSc Myosin motor doma 100.0 1E-173 2E-178 1651.3 64.4 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 2E-173 4E-178 1641.2 62.6 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 7E-166 1E-170 1601.2 56.5 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-114 4E-119 1098.7 29.0 752 61-826 60-1008(1062)
23 KOG1892 Actin filament-binding 100.0 1E-28 2.2E-33 295.2 20.9 263 1158-1497 595-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 2.3E-27 4.9E-32 234.3 6.8 105 1348-1455 1-105 (105)
25 KOG0161 Myosin class II heavy 99.5 7.9E-11 1.7E-15 160.1 43.1 464 353-875 324-831 (1930)
26 cd01363 Motor_domain Myosin an 98.6 4.7E-08 1E-12 107.3 7.1 90 132-230 8-98 (186)
27 COG5022 Myosin heavy chain [Cy 98.5 7.4E-05 1.6E-09 98.8 31.1 85 785-869 746-831 (1463)
28 KOG0160 Myosin class V heavy c 98.4 2.1E-06 4.5E-11 110.1 13.2 86 784-872 673-758 (862)
29 KOG0520 Uncharacterized conser 98.4 1E-06 2.2E-11 112.6 10.0 128 734-878 808-937 (975)
30 PF02736 Myosin_N: Myosin N-te 98.3 2.6E-06 5.7E-11 69.2 6.8 41 10-50 1-41 (42)
31 KOG0520 Uncharacterized conser 98.0 8.2E-06 1.8E-10 104.6 8.2 129 737-871 757-905 (975)
32 KOG0971 Microtubule-associated 97.7 0.041 8.8E-07 69.7 30.9 29 1318-1346 897-925 (1243)
33 KOG0971 Microtubule-associated 97.5 0.48 1E-05 60.6 36.4 46 1008-1053 504-549 (1243)
34 KOG1029 Endocytic adaptor prot 97.4 0.032 6.9E-07 69.5 25.3 24 1368-1391 1008-1031(1118)
35 PRK11637 AmiB activator; Provi 97.4 0.031 6.7E-07 69.8 25.2 46 974-1019 171-216 (428)
36 TIGR02169 SMC_prok_A chromosom 97.3 1.9 4E-05 61.2 45.4 9 433-441 5-13 (1164)
37 KOG0996 Structural maintenance 97.3 0.58 1.3E-05 61.9 34.6 9 721-729 250-258 (1293)
38 KOG0250 DNA repair protein RAD 97.2 0.77 1.7E-05 60.8 35.9 75 976-1050 390-464 (1074)
39 TIGR02169 SMC_prok_A chromosom 97.2 0.36 7.9E-06 68.3 36.8 6 1182-1187 617-622 (1164)
40 PF09726 Macoilin: Transmembra 97.2 0.079 1.7E-06 69.1 27.1 42 881-922 459-500 (697)
41 KOG0250 DNA repair protein RAD 97.1 0.48 1E-05 62.7 32.4 37 1013-1049 392-428 (1074)
42 COG1196 Smc Chromosome segrega 97.1 2.7 5.9E-05 59.2 43.0 17 1379-1395 946-962 (1163)
43 PRK11637 AmiB activator; Provi 97.1 0.13 2.9E-06 64.2 27.0 60 977-1036 181-240 (428)
44 KOG0933 Structural maintenance 97.0 0.54 1.2E-05 61.2 30.4 31 125-178 20-50 (1174)
45 KOG2128 Ras GTPase-activating 97.0 0.018 3.9E-07 76.8 18.3 113 742-854 513-644 (1401)
46 PRK04863 mukB cell division pr 97.0 1.1 2.4E-05 63.4 36.1 39 1012-1050 439-477 (1486)
47 PF12718 Tropomyosin_1: Tropom 96.9 0.13 2.7E-06 54.0 20.2 126 887-1037 12-137 (143)
48 KOG1029 Endocytic adaptor prot 96.8 2 4.3E-05 54.4 32.4 10 1442-1451 1053-1062(1118)
49 KOG2128 Ras GTPase-activating 96.8 0.017 3.7E-07 76.9 16.1 140 740-879 481-646 (1401)
50 TIGR02168 SMC_prok_B chromosom 96.8 1.2 2.7E-05 62.9 36.3 19 151-169 25-43 (1179)
51 PF09726 Macoilin: Transmembra 96.8 0.42 9E-06 62.6 28.4 50 994-1043 601-650 (697)
52 KOG0933 Structural maintenance 96.8 0.31 6.7E-06 63.3 26.0 11 408-418 316-326 (1174)
53 KOG4229 Myosin VII, myosin IXB 96.8 0.00055 1.2E-08 90.7 2.1 269 605-875 644-1009(1062)
54 KOG0164 Myosin class I heavy c 96.8 0.021 4.6E-07 70.6 15.0 62 782-853 694-755 (1001)
55 PF00612 IQ: IQ calmodulin-bin 96.7 0.0018 3.8E-08 44.5 3.2 20 785-804 2-21 (21)
56 PF08317 Spc7: Spc7 kinetochor 96.7 0.32 7E-06 58.4 24.1 79 972-1050 208-290 (325)
57 COG1196 Smc Chromosome segrega 96.6 2.4 5.3E-05 59.7 36.1 69 983-1051 393-461 (1163)
58 KOG1853 LIS1-interacting prote 96.6 0.38 8.2E-06 53.0 21.1 75 977-1051 95-179 (333)
59 PRK09039 hypothetical protein; 96.5 0.29 6.4E-06 59.0 22.6 70 972-1041 115-184 (343)
60 PF00612 IQ: IQ calmodulin-bin 96.5 0.0031 6.7E-08 43.3 3.4 20 737-756 2-21 (21)
61 PF12128 DUF3584: Protein of u 96.4 8.4 0.00018 54.6 39.4 27 1445-1472 1054-1081(1201)
62 PF12128 DUF3584: Protein of u 96.4 9 0.0002 54.3 42.0 40 1011-1050 493-532 (1201)
63 KOG0995 Centromere-associated 96.3 1.5 3.3E-05 54.4 26.4 23 848-870 265-287 (581)
64 PF07888 CALCOCO1: Calcium bin 96.3 4.1 8.9E-05 51.3 30.6 29 1023-1051 372-400 (546)
65 PRK02224 chromosome segregatio 96.3 1.2 2.7E-05 61.0 29.5 11 716-726 132-142 (880)
66 COG4942 Membrane-bound metallo 96.2 1.6 3.5E-05 52.9 26.0 33 1013-1045 215-247 (420)
67 PF07888 CALCOCO1: Calcium bin 96.2 0.71 1.5E-05 57.8 23.7 19 888-906 163-181 (546)
68 PRK02224 chromosome segregatio 96.2 5.6 0.00012 54.7 35.4 8 518-525 36-43 (880)
69 KOG0163 Myosin class VI heavy 96.2 3.1 6.7E-05 52.6 28.2 23 833-855 814-836 (1259)
70 KOG4643 Uncharacterized coiled 96.2 6.6 0.00014 51.7 32.0 161 883-1050 171-336 (1195)
71 PHA02562 46 endonuclease subun 96.2 0.8 1.7E-05 59.4 25.7 17 974-990 307-323 (562)
72 KOG0925 mRNA splicing factor A 96.2 0.0041 8.8E-08 74.1 4.0 57 101-166 23-79 (699)
73 COG1579 Zn-ribbon protein, pos 96.2 1.4 3E-05 49.8 23.6 36 974-1009 90-125 (239)
74 PF00261 Tropomyosin: Tropomyo 96.1 0.57 1.2E-05 53.7 21.1 25 973-997 134-158 (237)
75 PRK03918 chromosome segregatio 96.1 0.93 2E-05 62.2 26.7 18 152-169 26-43 (880)
76 PRK09039 hypothetical protein; 96.0 0.56 1.2E-05 56.6 21.4 23 889-911 53-75 (343)
77 PF14662 CCDC155: Coiled-coil 96.0 2.2 4.8E-05 46.2 23.0 78 974-1051 103-187 (193)
78 KOG0980 Actin-binding protein 96.0 8.3 0.00018 50.2 32.2 14 611-624 203-216 (980)
79 PF15397 DUF4618: Domain of un 96.0 3.7 8.1E-05 46.9 26.0 36 1018-1053 189-224 (258)
80 KOG0976 Rho/Rac1-interacting s 96.0 3.7 8.1E-05 52.2 27.6 51 985-1035 254-304 (1265)
81 PF15070 GOLGA2L5: Putative go 96.0 0.8 1.7E-05 59.1 23.4 12 1485-1496 594-605 (617)
82 PF14662 CCDC155: Coiled-coil 95.9 0.3 6.5E-06 52.6 16.2 76 977-1052 64-139 (193)
83 PF12718 Tropomyosin_1: Tropom 95.9 1.4 3E-05 46.3 21.1 66 981-1046 74-139 (143)
84 PF06785 UPF0242: Uncharacteri 95.9 1.5 3.4E-05 50.4 22.5 81 972-1052 133-224 (401)
85 smart00787 Spc7 Spc7 kinetocho 95.8 1.1 2.4E-05 53.2 22.2 14 1037-1050 272-285 (312)
86 KOG4643 Uncharacterized coiled 95.8 1.6 3.4E-05 57.0 24.4 47 886-932 405-454 (1195)
87 PRK03918 chromosome segregatio 95.8 2.4 5.3E-05 58.2 28.9 15 1458-1472 824-838 (880)
88 PF00038 Filament: Intermediat 95.8 6.4 0.00014 47.0 30.9 34 883-916 69-102 (312)
89 PF10473 CENP-F_leu_zip: Leuci 95.7 0.82 1.8E-05 47.5 17.8 36 987-1022 80-115 (140)
90 PF08317 Spc7: Spc7 kinetochor 95.7 2.6 5.5E-05 50.7 25.0 8 671-678 14-21 (325)
91 PF04849 HAP1_N: HAP1 N-termin 95.7 1.1 2.4E-05 52.2 20.6 71 972-1042 233-303 (306)
92 KOG1853 LIS1-interacting prote 95.7 1.2 2.6E-05 49.3 19.5 26 1026-1051 161-186 (333)
93 COG4372 Uncharacterized protei 95.6 4.7 0.0001 47.5 25.2 11 1292-1302 471-481 (499)
94 COG4942 Membrane-bound metallo 95.6 8.1 0.00018 47.1 29.0 10 1040-1049 235-244 (420)
95 KOG0980 Actin-binding protein 95.6 0.85 1.8E-05 58.7 20.6 22 889-910 358-379 (980)
96 KOG0999 Microtubule-associated 95.5 2.2 4.8E-05 52.1 22.8 25 1012-1036 167-191 (772)
97 KOG0977 Nuclear envelope prote 95.5 4.3 9.3E-05 51.1 26.1 28 1022-1049 342-369 (546)
98 PF09789 DUF2353: Uncharacteri 95.5 4.5 9.7E-05 47.8 24.8 138 913-1051 71-218 (319)
99 PF15070 GOLGA2L5: Putative go 95.5 13 0.00027 48.5 31.2 24 1010-1033 197-220 (617)
100 TIGR00606 rad50 rad50. This fa 95.4 4.1 8.9E-05 58.3 29.7 21 150-170 29-49 (1311)
101 COG3883 Uncharacterized protei 95.4 2.6 5.6E-05 48.3 22.0 60 883-946 39-98 (265)
102 KOG0018 Structural maintenance 95.4 15 0.00033 49.0 31.2 40 785-824 211-250 (1141)
103 KOG0996 Structural maintenance 95.4 16 0.00035 49.3 42.3 15 1437-1451 1203-1217(1293)
104 PTZ00014 myosin-A; Provisional 95.4 0.017 3.6E-07 76.6 5.4 41 785-825 778-818 (821)
105 PF05667 DUF812: Protein of un 95.3 1.1 2.3E-05 57.7 20.9 41 1010-1050 442-482 (594)
106 COG4372 Uncharacterized protei 95.3 8.5 0.00018 45.5 28.6 61 976-1036 220-280 (499)
107 COG1579 Zn-ribbon protein, pos 95.3 2.7 5.8E-05 47.6 21.5 50 972-1021 95-144 (239)
108 TIGR00606 rad50 rad50. This fa 95.1 1.7 3.6E-05 62.2 24.4 8 306-313 140-147 (1311)
109 smart00015 IQ Short calmodulin 95.1 0.021 4.5E-07 41.5 3.0 21 784-804 3-23 (26)
110 KOG0994 Extracellular matrix g 95.1 18 0.0004 48.3 35.1 37 84-121 192-229 (1758)
111 PRK04863 mukB cell division pr 95.1 27 0.00059 50.1 36.0 10 761-770 231-240 (1486)
112 KOG0976 Rho/Rac1-interacting s 95.0 16 0.00034 47.0 32.0 7 1386-1392 954-960 (1265)
113 TIGR03185 DNA_S_dndD DNA sulfu 95.0 7.5 0.00016 51.5 28.1 41 1008-1048 428-468 (650)
114 KOG4360 Uncharacterized coiled 94.9 1.5 3.2E-05 53.4 19.0 68 974-1041 234-301 (596)
115 PF04849 HAP1_N: HAP1 N-termin 94.9 4.7 0.0001 47.1 22.5 52 988-1039 235-286 (306)
116 KOG0963 Transcription factor/C 94.9 12 0.00027 47.2 27.1 40 1012-1051 314-359 (629)
117 smart00015 IQ Short calmodulin 94.8 0.03 6.6E-07 40.6 3.1 21 735-755 2-22 (26)
118 PF05010 TACC: Transforming ac 94.8 8.5 0.00018 42.9 23.5 38 1012-1049 158-195 (207)
119 COG5185 HEC1 Protein involved 94.8 7 0.00015 47.2 23.6 24 848-871 301-324 (622)
120 KOG4674 Uncharacterized conser 94.7 32 0.0007 49.2 37.6 69 892-960 769-837 (1822)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 2.1 4.6E-05 44.4 17.4 34 1019-1052 95-128 (132)
122 KOG0612 Rho-associated, coiled 94.6 25 0.00055 47.7 30.2 36 543-578 212-252 (1317)
123 smart00787 Spc7 Spc7 kinetocho 94.6 8.8 0.00019 45.7 24.5 9 670-678 9-17 (312)
124 PRK01156 chromosome segregatio 94.5 30 0.00064 47.8 36.7 21 1323-1343 732-752 (895)
125 KOG0612 Rho-associated, coiled 94.3 6 0.00013 53.2 23.9 26 884-909 503-528 (1317)
126 PF05667 DUF812: Protein of un 94.2 8.6 0.00019 49.7 25.1 16 549-566 79-94 (594)
127 KOG0946 ER-Golgi vesicle-tethe 94.2 6 0.00013 50.9 22.6 28 553-580 389-416 (970)
128 PF13851 GAS: Growth-arrest sp 94.1 4.9 0.00011 44.8 19.9 23 921-943 55-77 (201)
129 PRK01156 chromosome segregatio 94.1 5.5 0.00012 54.9 25.0 14 1458-1471 837-850 (895)
130 COG3883 Uncharacterized protei 94.1 9.8 0.00021 43.7 22.3 58 883-944 46-103 (265)
131 PF15066 CAGE1: Cancer-associa 94.1 6.7 0.00015 47.5 21.6 16 398-413 50-65 (527)
132 KOG1103 Predicted coiled-coil 94.1 5.6 0.00012 46.0 20.1 41 1010-1050 254-294 (561)
133 PF04091 Sec15: Exocyst comple 94.0 0.41 9E-06 57.0 12.0 132 1318-1450 177-311 (311)
134 KOG0977 Nuclear envelope prote 93.9 16 0.00034 46.3 25.5 19 1176-1194 313-331 (546)
135 PF08614 ATG16: Autophagy prot 93.9 0.42 9E-06 53.0 11.0 57 994-1050 123-179 (194)
136 PF05701 WEMBL: Weak chloropla 93.8 8.3 0.00018 49.5 24.0 13 977-989 341-353 (522)
137 PF10473 CENP-F_leu_zip: Leuci 93.8 5.7 0.00012 41.4 18.1 71 979-1049 51-121 (140)
138 KOG4674 Uncharacterized conser 93.8 47 0.001 47.6 31.8 62 848-909 660-723 (1822)
139 PF13207 AAA_17: AAA domain; P 93.8 0.042 9.1E-07 55.6 2.7 23 151-173 1-23 (121)
140 PF04156 IncA: IncA protein; 93.6 3.2 6.9E-05 45.9 17.4 25 1019-1043 162-186 (191)
141 KOG0982 Centrosomal protein Nu 93.5 4.4 9.4E-05 48.5 18.5 32 1020-1051 358-389 (502)
142 PF05483 SCP-1: Synaptonemal c 93.5 14 0.00031 46.9 23.7 174 875-1054 450-626 (786)
143 KOG0964 Structural maintenance 93.5 10 0.00022 49.9 23.0 21 890-910 301-321 (1200)
144 KOG1003 Actin filament-coating 93.4 12 0.00026 40.7 20.0 25 1020-1044 163-187 (205)
145 PF15619 Lebercilin: Ciliary p 93.3 16 0.00034 40.5 23.5 28 976-1003 121-148 (194)
146 TIGR02680 conserved hypothetic 93.2 38 0.00082 48.8 31.1 27 150-176 25-51 (1353)
147 TIGR01843 type_I_hlyD type I s 93.2 8.8 0.00019 47.7 22.7 20 1030-1049 247-266 (423)
148 PF10168 Nup88: Nuclear pore c 93.2 3.6 7.8E-05 54.4 19.5 22 621-642 421-442 (717)
149 KOG2129 Uncharacterized conser 92.9 10 0.00023 45.1 20.3 10 833-842 85-94 (552)
150 PF00038 Filament: Intermediat 92.9 26 0.00055 41.9 34.8 15 892-906 120-134 (312)
151 PRK10929 putative mechanosensi 92.8 14 0.00031 51.0 24.7 16 1034-1049 270-285 (1109)
152 PF13401 AAA_22: AAA domain; P 92.7 0.069 1.5E-06 54.7 2.5 29 147-175 2-30 (131)
153 PF09730 BicD: Microtubule-ass 92.7 11 0.00024 49.4 22.4 57 991-1047 125-181 (717)
154 PF15254 CCDC14: Coiled-coil d 92.7 14 0.00031 47.6 22.5 40 980-1019 494-533 (861)
155 KOG0249 LAR-interacting protei 92.6 9.5 0.0002 48.5 20.5 20 1369-1396 756-775 (916)
156 KOG4360 Uncharacterized coiled 92.6 8.3 0.00018 47.2 19.5 78 973-1050 226-303 (596)
157 PF15619 Lebercilin: Ciliary p 92.6 20 0.00043 39.8 24.9 28 982-1009 120-147 (194)
158 PF14915 CCDC144C: CCDC144C pr 92.6 25 0.00054 40.9 24.9 111 925-1045 183-301 (305)
159 PF10174 Cast: RIM-binding pro 92.5 49 0.0011 44.2 33.6 77 973-1049 465-541 (775)
160 PF10168 Nup88: Nuclear pore c 92.5 11 0.00023 50.1 22.5 22 541-563 377-398 (717)
161 KOG0994 Extracellular matrix g 92.5 52 0.0011 44.4 37.5 36 1014-1049 1709-1744(1758)
162 KOG0946 ER-Golgi vesicle-tethe 92.5 10 0.00022 49.0 20.8 80 972-1051 736-821 (970)
163 KOG0999 Microtubule-associated 92.4 35 0.00076 42.3 24.8 59 977-1035 153-214 (772)
164 KOG1937 Uncharacterized conser 92.4 18 0.00039 43.9 21.6 34 1019-1052 386-419 (521)
165 KOG0982 Centrosomal protein Nu 92.3 25 0.00055 42.4 22.4 11 1040-1050 407-417 (502)
166 KOG4593 Mitotic checkpoint pro 92.3 44 0.00095 43.1 31.4 24 1432-1455 632-662 (716)
167 PF13191 AAA_16: AAA ATPase do 92.3 0.089 1.9E-06 57.2 2.7 34 143-176 18-51 (185)
168 PRK10884 SH3 domain-containing 92.2 1.7 3.6E-05 48.5 12.6 76 973-1051 93-168 (206)
169 PRK04778 septation ring format 92.2 24 0.00053 45.9 25.2 12 712-723 59-70 (569)
170 KOG4593 Mitotic checkpoint pro 92.2 35 0.00075 43.9 24.8 18 1033-1050 255-272 (716)
171 PF07111 HCR: Alpha helical co 92.1 25 0.00054 45.2 23.5 186 861-1049 72-269 (739)
172 PF08614 ATG16: Autophagy prot 91.9 1.8 4E-05 47.9 12.6 70 971-1040 114-183 (194)
173 PF13238 AAA_18: AAA domain; P 91.9 0.1 2.2E-06 53.0 2.5 22 152-173 1-22 (129)
174 PF09755 DUF2046: Uncharacteri 91.7 33 0.00071 40.3 28.7 20 1032-1051 225-244 (310)
175 cd00009 AAA The AAA+ (ATPases 91.6 0.21 4.5E-06 51.3 4.4 30 145-174 15-44 (151)
176 PF10481 CENP-F_N: Cenp-F N-te 91.5 6.7 0.00014 44.4 15.9 74 973-1053 60-133 (307)
177 cd02019 NK Nucleoside/nucleoti 91.5 0.14 3.1E-06 46.6 2.7 22 152-173 2-23 (69)
178 TIGR02322 phosphon_PhnN phosph 91.5 0.12 2.7E-06 56.2 2.8 25 150-174 2-26 (179)
179 TIGR01843 type_I_hlyD type I s 91.4 13 0.00028 46.3 21.0 25 1020-1044 244-268 (423)
180 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.4 10 0.00023 39.3 16.7 61 976-1039 69-129 (132)
181 COG0444 DppD ABC-type dipeptid 91.4 0.11 2.4E-06 60.7 2.3 28 147-174 29-56 (316)
182 PF13514 AAA_27: AAA domain 91.4 68 0.0015 45.4 30.0 21 154-174 1-21 (1111)
183 PF10186 Atg14: UV radiation r 91.3 7 0.00015 46.2 17.6 73 975-1047 72-144 (302)
184 TIGR03015 pepcterm_ATPase puta 91.2 0.19 4.1E-06 58.5 4.2 28 147-174 41-68 (269)
185 PTZ00121 MAEBL; Provisional 91.2 80 0.0017 43.9 35.8 33 65-97 162-194 (2084)
186 KOG2991 Splicing regulator [RN 91.1 30 0.00066 38.9 26.6 52 999-1050 255-306 (330)
187 KOG0979 Structural maintenance 91.1 34 0.00074 45.7 23.8 30 1320-1349 835-865 (1072)
188 KOG0964 Structural maintenance 90.9 67 0.0015 42.8 25.8 36 1015-1050 460-495 (1200)
189 PRK13833 conjugal transfer pro 90.8 0.23 4.9E-06 59.3 4.3 34 140-175 137-170 (323)
190 PRK07196 fliI flagellum-specif 90.8 0.29 6.2E-06 60.5 5.3 42 132-173 138-179 (434)
191 KOG1003 Actin filament-coating 90.8 28 0.00061 37.9 21.9 70 977-1046 127-196 (205)
192 PF04111 APG6: Autophagy prote 90.8 1.4 3.1E-05 52.4 10.9 13 1321-1333 289-301 (314)
193 TIGR00150 HI0065_YjeE ATPase, 90.7 0.32 7E-06 50.3 4.7 27 147-173 20-46 (133)
194 TIGR03007 pepcterm_ChnLen poly 90.7 21 0.00046 45.6 22.3 13 974-986 255-267 (498)
195 COG0419 SbcC ATPase involved i 90.6 78 0.0017 43.8 28.8 38 1324-1361 740-777 (908)
196 PRK06696 uridine kinase; Valid 90.5 0.3 6.5E-06 55.4 4.8 40 134-175 9-48 (223)
197 KOG2129 Uncharacterized conser 90.5 46 0.001 39.9 23.2 25 974-998 254-278 (552)
198 PRK10698 phage shock protein P 90.5 32 0.00068 39.1 20.7 76 972-1047 98-184 (222)
199 PF00004 AAA: ATPase family as 90.4 0.16 3.6E-06 51.7 2.4 23 152-174 1-23 (132)
200 KOG1937 Uncharacterized conser 90.4 40 0.00087 41.0 21.7 36 1014-1049 388-423 (521)
201 cd01131 PilT Pilus retraction 90.4 0.18 3.8E-06 56.1 2.7 25 151-175 3-27 (198)
202 cd00820 PEPCK_HprK Phosphoenol 90.4 0.2 4.4E-06 49.7 2.8 23 148-170 14-36 (107)
203 PRK09270 nucleoside triphospha 90.3 0.41 8.8E-06 54.6 5.6 34 145-178 29-62 (229)
204 PRK05480 uridine/cytidine kina 90.3 0.22 4.8E-06 55.7 3.4 27 147-173 4-30 (209)
205 PF13851 GAS: Growth-arrest sp 90.3 21 0.00046 39.8 18.8 27 974-1000 101-127 (201)
206 cd01918 HprK_C HprK/P, the bif 90.3 0.21 4.5E-06 52.7 2.9 24 149-172 14-37 (149)
207 PF10481 CENP-F_N: Cenp-F N-te 90.2 12 0.00027 42.4 16.5 58 995-1052 68-125 (307)
208 PRK00300 gmk guanylate kinase; 90.2 0.19 4E-06 56.1 2.7 26 148-173 4-29 (205)
209 COG5185 HEC1 Protein involved 90.2 53 0.0012 40.1 24.9 29 1008-1036 375-403 (622)
210 cd01129 PulE-GspE PulE/GspE Th 90.2 0.29 6.3E-06 57.0 4.3 35 140-175 72-106 (264)
211 PRK04778 septation ring format 90.1 35 0.00076 44.4 23.6 60 975-1034 350-409 (569)
212 PF04111 APG6: Autophagy prote 90.1 3.5 7.6E-05 49.2 13.4 72 978-1049 48-119 (314)
213 KOG0979 Structural maintenance 90.1 28 0.0006 46.5 21.8 21 1107-1127 477-497 (1072)
214 cd02023 UMPK Uridine monophosp 90.0 0.2 4.3E-06 55.6 2.7 22 152-173 2-23 (198)
215 COG0194 Gmk Guanylate kinase [ 89.8 0.2 4.3E-06 54.1 2.4 25 149-173 4-28 (191)
216 TIGR03420 DnaA_homol_Hda DnaA 89.8 0.44 9.6E-06 53.8 5.4 40 136-175 25-64 (226)
217 PF05911 DUF869: Plant protein 89.7 66 0.0014 43.0 25.4 81 971-1051 118-205 (769)
218 PF15397 DUF4618: Domain of un 89.7 44 0.00096 38.5 24.4 26 1025-1050 189-214 (258)
219 PF00485 PRK: Phosphoribulokin 89.7 0.21 4.5E-06 55.4 2.5 26 152-177 2-27 (194)
220 COG2433 Uncharacterized conser 89.7 3.5 7.5E-05 51.7 12.9 78 973-1050 429-509 (652)
221 KOG0978 E3 ubiquitin ligase in 89.6 80 0.0017 41.4 36.7 65 988-1052 553-617 (698)
222 PF04437 RINT1_TIP1: RINT-1 / 89.6 10 0.00022 48.5 17.9 124 1318-1447 353-491 (494)
223 PF01583 APS_kinase: Adenylyls 89.6 0.33 7.2E-06 51.6 3.8 29 149-177 2-30 (156)
224 PRK12402 replication factor C 89.5 0.42 9.1E-06 57.6 5.2 56 117-174 6-61 (337)
225 KOG0963 Transcription factor/C 89.5 73 0.0016 40.7 27.2 11 674-684 87-97 (629)
226 TIGR01005 eps_transp_fam exopo 89.4 67 0.0015 43.4 26.5 13 695-707 84-96 (754)
227 COG1660 Predicted P-loop-conta 89.4 0.2 4.3E-06 56.5 2.1 19 151-169 3-21 (286)
228 KOG4809 Rab6 GTPase-interactin 89.4 56 0.0012 40.8 22.2 39 880-918 329-367 (654)
229 TIGR00235 udk uridine kinase. 89.2 0.29 6.3E-06 54.8 3.3 28 147-174 4-31 (207)
230 PHA02544 44 clamp loader, smal 89.2 0.38 8.2E-06 57.5 4.5 55 117-173 12-67 (316)
231 PF00769 ERM: Ezrin/radixin/mo 89.2 16 0.00035 42.1 17.3 34 1011-1044 78-111 (246)
232 COG4026 Uncharacterized protei 89.1 3.4 7.3E-05 45.1 10.8 25 1019-1043 181-205 (290)
233 COG1340 Uncharacterized archae 89.1 52 0.0011 38.5 28.2 8 980-987 165-172 (294)
234 TIGR02782 TrbB_P P-type conjug 89.0 0.38 8.2E-06 57.1 4.1 34 140-175 125-158 (299)
235 smart00382 AAA ATPases associa 88.9 0.25 5.4E-06 50.1 2.3 28 149-176 2-29 (148)
236 PTZ00301 uridine kinase; Provi 88.9 0.28 6E-06 55.1 2.8 23 152-174 6-28 (210)
237 TIGR01005 eps_transp_fam exopo 88.8 32 0.0007 46.5 22.7 17 1429-1445 659-675 (754)
238 PRK08233 hypothetical protein; 88.7 0.24 5.2E-06 53.9 2.1 25 150-174 4-28 (182)
239 TIGR02173 cyt_kin_arch cytidyl 88.6 0.27 5.9E-06 52.8 2.4 23 151-173 2-24 (171)
240 PLN03188 kinesin-12 family pro 88.5 70 0.0015 44.2 24.2 36 131-166 148-183 (1320)
241 PRK05541 adenylylsulfate kinas 88.4 0.32 6.8E-06 52.9 2.8 29 147-175 5-33 (176)
242 PF14197 Cep57_CLD_2: Centroso 88.4 4.6 9.9E-05 36.9 9.6 63 977-1039 2-64 (69)
243 cd02028 UMPK_like Uridine mono 88.4 0.32 6.8E-06 53.2 2.8 24 152-175 2-25 (179)
244 cd02025 PanK Pantothenate kina 88.3 0.31 6.6E-06 55.2 2.7 24 152-175 2-25 (220)
245 cd02020 CMPK Cytidine monophos 88.3 0.33 7.1E-06 50.7 2.7 22 152-173 2-23 (147)
246 PF09789 DUF2353: Uncharacteri 88.2 64 0.0014 38.4 22.8 49 983-1031 129-177 (319)
247 PF03668 ATP_bind_2: P-loop AT 88.2 0.3 6.4E-06 56.6 2.4 20 150-169 2-21 (284)
248 PRK07261 topology modulation p 88.1 0.34 7.4E-06 52.6 2.8 23 151-173 2-24 (171)
249 KOG4673 Transcription factor T 88.0 91 0.002 39.9 32.4 22 1008-1029 612-633 (961)
250 PF10186 Atg14: UV radiation r 87.9 11 0.00024 44.5 15.8 77 973-1049 63-139 (302)
251 PF08826 DMPK_coil: DMPK coile 87.9 7.1 0.00015 34.7 10.1 45 999-1043 16-60 (61)
252 PF06160 EzrA: Septation ring 87.9 99 0.0021 40.3 31.8 23 1027-1049 311-333 (560)
253 PRK06547 hypothetical protein; 87.9 0.66 1.4E-05 50.4 4.8 29 145-173 11-39 (172)
254 PRK06762 hypothetical protein; 87.8 0.41 8.8E-06 51.4 3.2 24 150-173 3-26 (166)
255 PRK12704 phosphodiesterase; Pr 87.8 91 0.002 40.1 24.4 15 1405-1419 415-429 (520)
256 cd01130 VirB11-like_ATPase Typ 87.8 0.33 7.1E-06 53.4 2.5 26 149-174 25-50 (186)
257 cd00227 CPT Chloramphenicol (C 87.8 0.4 8.7E-06 52.1 3.1 25 149-173 2-26 (175)
258 PRK08972 fliI flagellum-specif 87.8 0.84 1.8E-05 56.3 6.1 41 132-172 145-185 (444)
259 PRK14961 DNA polymerase III su 87.8 0.77 1.7E-05 56.1 5.9 56 117-174 7-63 (363)
260 PF05729 NACHT: NACHT domain 87.7 0.42 9.1E-06 50.7 3.2 27 151-177 2-28 (166)
261 PF06785 UPF0242: Uncharacteri 87.6 58 0.0013 38.2 19.7 17 1135-1151 308-324 (401)
262 COG1340 Uncharacterized archae 87.6 64 0.0014 37.8 28.8 42 1001-1042 200-241 (294)
263 PRK08118 topology modulation p 87.6 0.4 8.6E-06 51.8 2.9 25 150-174 2-26 (167)
264 PF09304 Cortex-I_coil: Cortex 87.6 17 0.00037 35.7 13.4 59 975-1033 18-76 (107)
265 COG4172 ABC-type uncharacteriz 87.5 0.29 6.4E-06 58.2 1.9 28 150-177 37-64 (534)
266 PF00910 RNA_helicase: RNA hel 87.4 0.38 8.2E-06 47.9 2.4 25 152-176 1-25 (107)
267 PRK13851 type IV secretion sys 87.4 0.42 9.1E-06 57.6 3.2 26 149-174 162-187 (344)
268 PRK11281 hypothetical protein; 87.4 87 0.0019 43.8 25.1 24 1028-1051 284-307 (1113)
269 PRK00131 aroK shikimate kinase 87.4 0.45 9.8E-06 51.2 3.2 26 148-173 3-28 (175)
270 PRK14737 gmk guanylate kinase; 87.3 0.35 7.7E-06 53.2 2.3 25 149-173 4-28 (186)
271 PF07724 AAA_2: AAA domain (Cd 87.3 0.45 9.8E-06 51.6 3.1 24 151-174 5-28 (171)
272 PF10146 zf-C4H2: Zinc finger- 87.3 22 0.00048 40.5 16.5 32 1019-1050 71-102 (230)
273 PF12846 AAA_10: AAA-like doma 87.3 0.44 9.4E-06 56.1 3.3 29 149-177 1-29 (304)
274 PF00769 ERM: Ezrin/radixin/mo 87.2 19 0.00042 41.5 16.3 10 1028-1037 102-111 (246)
275 PRK13900 type IV secretion sys 87.1 0.54 1.2E-05 56.5 3.9 31 142-174 155-185 (332)
276 PLN02939 transferase, transfer 87.1 50 0.0011 44.9 21.9 60 881-941 225-284 (977)
277 PF15254 CCDC14: Coiled-coil d 87.0 44 0.00096 43.4 20.2 17 1029-1045 536-552 (861)
278 PRK10078 ribose 1,5-bisphospho 87.0 0.34 7.4E-06 53.3 2.0 24 150-173 3-26 (186)
279 TIGR01420 pilT_fam pilus retra 87.0 0.39 8.4E-06 58.2 2.7 34 140-174 114-147 (343)
280 PLN03025 replication factor C 87.0 0.73 1.6E-05 55.3 5.0 56 117-174 4-59 (319)
281 PRK08472 fliI flagellum-specif 86.9 1.7 3.7E-05 53.8 8.1 42 132-173 140-181 (434)
282 KOG2891 Surface glycoprotein [ 86.9 52 0.0011 37.2 18.5 28 654-681 107-138 (445)
283 cd00071 GMPK Guanosine monopho 86.9 0.35 7.6E-06 50.4 1.9 22 152-173 2-23 (137)
284 cd02024 NRK1 Nicotinamide ribo 86.8 0.39 8.6E-06 52.8 2.3 22 152-173 2-23 (187)
285 COG4608 AppF ABC-type oligopep 86.7 0.41 8.8E-06 54.9 2.4 32 147-178 37-68 (268)
286 PRK08084 DNA replication initi 86.7 0.89 1.9E-05 52.0 5.3 40 136-175 32-71 (235)
287 PF13514 AAA_27: AAA domain 86.6 63 0.0014 45.8 24.2 24 656-680 12-35 (1111)
288 TIGR01313 therm_gnt_kin carboh 86.5 0.36 7.7E-06 51.7 1.8 23 152-174 1-23 (163)
289 PF13870 DUF4201: Domain of un 86.5 54 0.0012 35.8 23.5 16 891-906 15-30 (177)
290 TIGR02524 dot_icm_DotB Dot/Icm 86.5 0.44 9.6E-06 57.8 2.7 28 148-175 133-160 (358)
291 PRK00889 adenylylsulfate kinas 86.4 0.69 1.5E-05 50.2 4.0 29 148-176 3-31 (175)
292 PF13245 AAA_19: Part of AAA d 86.1 0.82 1.8E-05 42.6 3.7 28 148-175 9-36 (76)
293 TIGR02928 orc1/cdc6 family rep 86.1 0.69 1.5E-05 56.4 4.3 36 140-175 31-66 (365)
294 PF09730 BicD: Microtubule-ass 86.0 55 0.0012 43.2 21.0 48 973-1020 97-147 (717)
295 PRK14738 gmk guanylate kinase; 85.9 0.53 1.1E-05 52.7 2.8 26 147-172 11-36 (206)
296 PRK06315 type III secretion sy 85.9 1.2 2.6E-05 55.3 6.1 35 139-173 154-188 (442)
297 KOG4403 Cell surface glycoprot 85.8 49 0.0011 39.9 18.5 30 876-909 243-272 (575)
298 KOG4403 Cell surface glycoprot 85.8 92 0.002 37.7 21.2 22 872-893 249-270 (575)
299 TIGR02525 plasmid_TraJ plasmid 85.7 0.51 1.1E-05 57.4 2.8 27 149-175 149-175 (372)
300 PF10205 KLRAQ: Predicted coil 85.7 14 0.0003 36.2 11.8 70 978-1047 3-72 (102)
301 KOG1899 LAR transmembrane tyro 85.7 29 0.00064 43.6 17.1 39 1358-1396 686-728 (861)
302 PF00437 T2SE: Type II/IV secr 85.6 0.61 1.3E-05 54.5 3.2 28 148-175 126-153 (270)
303 cd02027 APSK Adenosine 5'-phos 85.6 0.58 1.2E-05 49.6 2.8 24 152-175 2-25 (149)
304 COG0572 Udk Uridine kinase [Nu 85.5 0.55 1.2E-05 52.4 2.6 23 152-174 11-33 (218)
305 PRK10751 molybdopterin-guanine 85.5 0.59 1.3E-05 50.7 2.8 26 151-176 8-33 (173)
306 TIGR03263 guanyl_kin guanylate 85.5 0.42 9.2E-06 52.0 1.8 24 150-173 2-25 (180)
307 PRK00440 rfc replication facto 85.4 0.94 2E-05 54.0 4.9 55 118-174 9-63 (319)
308 PRK14956 DNA polymerase III su 85.3 1 2.2E-05 56.3 5.0 55 117-175 9-66 (484)
309 cd01120 RecA-like_NTPases RecA 85.3 0.64 1.4E-05 49.0 3.0 24 152-175 2-25 (165)
310 COG1102 Cmk Cytidylate kinase 85.2 0.64 1.4E-05 49.1 2.7 23 152-174 3-25 (179)
311 TIGR00554 panK_bact pantothena 85.1 1.1 2.4E-05 52.7 5.1 29 147-175 60-88 (290)
312 PRK12377 putative replication 85.0 1.1 2.5E-05 51.4 5.0 44 131-176 85-128 (248)
313 PF03962 Mnd1: Mnd1 family; I 85.0 8.4 0.00018 42.5 11.5 81 972-1053 68-152 (188)
314 PRK06217 hypothetical protein; 84.9 0.56 1.2E-05 51.4 2.4 24 151-174 3-26 (183)
315 KOG4809 Rab6 GTPase-interactin 84.7 80 0.0017 39.5 20.0 80 971-1050 329-408 (654)
316 PF01576 Myosin_tail_1: Myosin 84.7 0.29 6.3E-06 66.1 0.0 80 972-1051 425-504 (859)
317 PRK07721 fliI flagellum-specif 84.7 3.2 6.9E-05 51.8 9.0 42 132-173 141-182 (438)
318 cd00464 SK Shikimate kinase (S 84.6 0.61 1.3E-05 49.2 2.4 24 151-174 1-24 (154)
319 PRK08903 DnaA regulatory inact 84.6 1.4 3.1E-05 49.9 5.6 29 147-175 40-68 (227)
320 COG1125 OpuBA ABC-type proline 84.5 0.56 1.2E-05 52.9 2.1 24 151-174 29-52 (309)
321 PRK03846 adenylylsulfate kinas 84.5 1.1 2.4E-05 49.7 4.6 31 146-176 21-51 (198)
322 TIGR01000 bacteriocin_acc bact 84.4 1.2E+02 0.0026 38.4 23.2 178 862-1039 101-315 (457)
323 PF13671 AAA_33: AAA domain; P 84.4 0.53 1.1E-05 49.0 1.8 23 152-174 2-24 (143)
324 smart00333 TUDOR Tudor domain. 84.3 3 6.6E-05 36.1 6.3 51 6-56 2-54 (57)
325 TIGR02902 spore_lonB ATP-depen 84.3 1.1 2.4E-05 57.6 4.9 30 144-173 81-110 (531)
326 PRK00411 cdc6 cell division co 84.3 1 2.2E-05 55.7 4.5 34 142-175 48-81 (394)
327 PRK13764 ATPase; Provisional 84.2 0.81 1.7E-05 58.8 3.7 27 149-175 257-283 (602)
328 KOG0243 Kinesin-like protein [ 84.2 62 0.0013 43.9 20.5 9 314-322 107-115 (1041)
329 COG1123 ATPase components of v 84.2 0.53 1.1E-05 59.1 2.0 29 148-176 34-62 (539)
330 PRK14964 DNA polymerase III su 84.2 1 2.2E-05 56.7 4.5 56 117-176 4-62 (491)
331 KOG1962 B-cell receptor-associ 84.2 7.8 0.00017 43.1 10.6 18 1035-1052 192-209 (216)
332 KOG0804 Cytoplasmic Zn-finger 84.1 35 0.00075 41.7 16.4 19 1029-1047 428-446 (493)
333 PLN03188 kinesin-12 family pro 84.0 1.7E+02 0.0037 40.8 24.3 20 204-223 293-312 (1320)
334 KOG4460 Nuclear pore complex, 83.9 1.1E+02 0.0024 38.3 20.6 27 1022-1048 709-735 (741)
335 PRK10929 putative mechanosensi 83.9 1E+02 0.0022 43.1 23.1 24 974-997 174-197 (1109)
336 PF03205 MobB: Molybdopterin g 83.7 0.82 1.8E-05 47.9 2.9 27 151-177 2-28 (140)
337 cd02029 PRK_like Phosphoribulo 83.7 0.82 1.8E-05 52.7 3.1 24 152-175 2-25 (277)
338 PRK06645 DNA polymerase III su 83.7 1.3 2.8E-05 56.2 5.1 57 118-176 13-70 (507)
339 PF03266 NTPase_1: NTPase; In 83.6 0.78 1.7E-05 49.6 2.7 24 152-175 2-25 (168)
340 KOG0995 Centromere-associated 83.5 1.4E+02 0.003 37.9 33.2 25 800-824 265-289 (581)
341 PF03215 Rad17: Rad17 cell cyc 83.4 1 2.2E-05 57.2 4.1 58 116-173 9-69 (519)
342 COG3074 Uncharacterized protei 83.4 10 0.00023 33.8 8.8 34 1018-1051 28-61 (79)
343 PRK05896 DNA polymerase III su 83.4 1.5 3.3E-05 56.2 5.6 59 116-176 6-65 (605)
344 TIGR02533 type_II_gspE general 83.3 0.96 2.1E-05 57.3 3.8 35 139-174 233-267 (486)
345 COG1124 DppF ABC-type dipeptid 83.3 0.71 1.5E-05 52.0 2.3 29 147-175 31-59 (252)
346 TIGR02977 phageshock_pspA phag 83.2 88 0.0019 35.4 22.5 76 971-1046 97-183 (219)
347 PRK13342 recombination factor 83.2 1.3 2.7E-05 55.3 4.7 43 130-173 18-60 (413)
348 PF02367 UPF0079: Uncharacteri 83.2 0.83 1.8E-05 46.6 2.6 27 147-173 13-39 (123)
349 PRK09111 DNA polymerase III su 83.1 1.1 2.4E-05 58.0 4.2 58 117-176 15-73 (598)
350 PRK05057 aroK shikimate kinase 83.0 0.87 1.9E-05 49.4 2.9 25 149-173 4-28 (172)
351 PTZ00112 origin recognition co 83.0 1.8 3.8E-05 57.0 5.9 45 132-176 764-808 (1164)
352 PF11559 ADIP: Afadin- and alp 82.9 22 0.00047 37.8 13.3 59 977-1035 63-121 (151)
353 KOG0288 WD40 repeat protein Ti 82.9 60 0.0013 39.3 17.6 15 893-907 10-24 (459)
354 cd02021 GntK Gluconate kinase 82.9 0.76 1.6E-05 48.4 2.3 22 152-173 2-23 (150)
355 COG0563 Adk Adenylate kinase a 82.8 0.86 1.9E-05 49.8 2.7 22 152-173 3-24 (178)
356 COG2204 AtoC Response regulato 82.7 0.94 2E-05 56.2 3.3 64 147-220 162-233 (464)
357 PF07475 Hpr_kinase_C: HPr Ser 82.6 0.83 1.8E-05 49.0 2.4 23 149-171 18-40 (171)
358 PRK04182 cytidylate kinase; Pr 82.6 0.79 1.7E-05 49.6 2.3 23 151-173 2-24 (180)
359 COG4172 ABC-type uncharacteriz 82.6 0.76 1.6E-05 54.9 2.2 30 147-176 311-340 (534)
360 PRK09825 idnK D-gluconate kina 82.6 0.95 2.1E-05 49.4 2.9 26 149-174 3-28 (176)
361 PF09755 DUF2046: Uncharacteri 82.5 1.1E+02 0.0024 36.1 33.6 15 1037-1051 262-276 (310)
362 TIGR01360 aden_kin_iso1 adenyl 82.5 0.9 2E-05 49.6 2.8 23 151-173 5-27 (188)
363 PF13555 AAA_29: P-loop contai 82.5 1.2 2.6E-05 39.7 3.0 22 151-172 25-46 (62)
364 TIGR00634 recN DNA repair prot 82.4 1.1E+02 0.0024 39.8 22.2 29 1023-1051 347-375 (563)
365 TIGR03319 YmdA_YtgF conserved 82.4 1.6E+02 0.0035 37.9 24.4 16 1404-1419 408-423 (514)
366 COG2884 FtsE Predicted ATPase 82.4 0.85 1.8E-05 49.5 2.3 23 149-171 28-50 (223)
367 COG0529 CysC Adenylylsulfate k 82.2 1.7 3.7E-05 46.7 4.4 34 145-178 19-52 (197)
368 PF14915 CCDC144C: CCDC144C pr 82.2 1.1E+02 0.0024 35.8 31.6 37 1017-1053 202-238 (305)
369 PF12777 MT: Microtubule-bindi 82.1 50 0.0011 40.1 17.7 40 1011-1050 231-270 (344)
370 PRK13894 conjugal transfer ATP 82.1 0.93 2E-05 54.2 2.8 27 149-175 148-174 (319)
371 KOG1962 B-cell receptor-associ 82.1 15 0.00033 40.9 11.8 59 979-1037 150-208 (216)
372 PF13870 DUF4201: Domain of un 82.1 83 0.0018 34.3 18.3 32 973-1004 42-73 (177)
373 PRK12608 transcription termina 82.1 1.2 2.6E-05 53.8 3.7 43 133-175 117-159 (380)
374 PF05010 TACC: Transforming ac 82.0 93 0.002 34.9 22.5 16 926-941 81-96 (207)
375 KOG0249 LAR-interacting protei 81.9 95 0.002 40.1 19.6 8 1328-1335 718-725 (916)
376 cd03115 SRP The signal recogni 81.9 1.2 2.7E-05 48.1 3.5 27 151-177 2-28 (173)
377 cd02034 CooC The accessory pro 81.8 1.3 2.7E-05 44.9 3.3 26 152-177 2-27 (116)
378 PRK04040 adenylate kinase; Pro 81.8 0.94 2E-05 50.0 2.6 24 150-173 3-26 (188)
379 COG0419 SbcC ATPase involved i 81.8 2.3E+02 0.005 39.3 29.1 37 1012-1048 407-443 (908)
380 PRK15453 phosphoribulokinase; 81.7 1 2.3E-05 52.3 2.9 25 149-173 5-29 (290)
381 PF07728 AAA_5: AAA domain (dy 81.5 0.99 2.1E-05 46.8 2.5 22 152-173 2-23 (139)
382 PRK06002 fliI flagellum-specif 81.5 1.6 3.5E-05 54.1 4.6 28 145-172 161-188 (450)
383 PF15066 CAGE1: Cancer-associa 81.4 1.5E+02 0.0032 36.7 26.1 20 924-943 414-433 (527)
384 TIGR02903 spore_lon_C ATP-depe 81.3 2 4.2E-05 56.2 5.6 35 141-175 167-201 (615)
385 PRK10246 exonuclease subunit S 81.3 1.7E+02 0.0037 41.2 24.6 177 874-1050 667-864 (1047)
386 PRK14955 DNA polymerase III su 81.3 1.9 4.1E-05 53.4 5.3 56 118-175 8-64 (397)
387 PRK05416 glmZ(sRNA)-inactivati 81.2 0.94 2E-05 53.3 2.4 22 149-170 6-27 (288)
388 KOG0056 Heavy metal exporter H 81.0 1.3 2.9E-05 53.8 3.5 41 148-188 563-603 (790)
389 PF11559 ADIP: Afadin- and alp 81.0 28 0.0006 37.0 13.3 25 978-1002 57-81 (151)
390 PRK07667 uridine kinase; Provi 81.0 1.9 4E-05 47.8 4.6 26 150-175 18-43 (193)
391 PRK06893 DNA replication initi 80.9 2.2 4.7E-05 48.7 5.2 39 137-176 28-66 (229)
392 PRK06761 hypothetical protein; 80.9 0.97 2.1E-05 52.9 2.4 26 150-175 4-29 (282)
393 TIGR02546 III_secr_ATP type II 80.9 2.7 5.8E-05 52.3 6.4 38 136-173 132-169 (422)
394 PRK14732 coaE dephospho-CoA ki 80.9 1.2 2.6E-05 49.5 3.0 48 152-204 2-54 (196)
395 PF10234 Cluap1: Clusterin-ass 80.9 48 0.001 38.5 15.7 68 974-1041 170-237 (267)
396 PF09738 DUF2051: Double stran 80.9 91 0.002 37.1 18.4 63 976-1038 101-163 (302)
397 PF14197 Cep57_CLD_2: Centroso 80.9 20 0.00044 32.8 10.2 66 984-1049 2-67 (69)
398 KOG0018 Structural maintenance 80.8 2.3E+02 0.005 38.7 31.2 32 1492-1526 1075-1107(1141)
399 PRK06936 type III secretion sy 80.7 1.6 3.5E-05 54.0 4.3 42 132-173 145-186 (439)
400 COG2805 PilT Tfp pilus assembl 80.7 1.2 2.5E-05 51.7 2.8 78 87-175 70-151 (353)
401 PF05557 MAD: Mitotic checkpoi 80.7 0.51 1.1E-05 63.0 0.0 9 1442-1450 655-663 (722)
402 COG1382 GimC Prefoldin, chaper 80.7 40 0.00087 34.2 13.1 38 1011-1048 73-110 (119)
403 PRK14527 adenylate kinase; Pro 80.6 1.3 2.8E-05 48.8 3.2 27 148-174 5-31 (191)
404 PRK08727 hypothetical protein; 80.5 2.2 4.8E-05 48.8 5.1 31 146-176 38-68 (233)
405 PRK05342 clpX ATP-dependent pr 80.5 2.1 4.6E-05 53.0 5.2 63 111-173 59-132 (412)
406 TIGR00455 apsK adenylylsulfate 80.5 1.2 2.6E-05 48.8 2.8 29 147-175 16-44 (184)
407 PRK09099 type III secretion sy 80.4 2.2 4.8E-05 53.0 5.3 37 137-173 151-187 (441)
408 PHA00729 NTP-binding motif con 80.4 2.1 4.7E-05 48.3 4.8 29 146-174 14-42 (226)
409 PF04665 Pox_A32: Poxvirus A32 80.3 1.1 2.5E-05 51.0 2.6 25 151-175 15-39 (241)
410 COG1493 HprK Serine kinase of 80.3 1.2 2.6E-05 51.5 2.8 24 149-172 145-168 (308)
411 PRK08356 hypothetical protein; 80.2 1 2.2E-05 49.9 2.1 22 150-171 6-27 (195)
412 PF10146 zf-C4H2: Zinc finger- 80.2 27 0.00058 39.8 13.3 64 974-1044 40-103 (230)
413 TIGR03497 FliI_clade2 flagella 80.1 3.1 6.8E-05 51.5 6.5 36 138-173 126-161 (413)
414 PRK15093 antimicrobial peptide 80.1 1.2 2.5E-05 53.8 2.8 27 147-173 31-57 (330)
415 TIGR03499 FlhF flagellar biosy 80.1 1.5 3.2E-05 51.6 3.6 45 132-176 169-221 (282)
416 PF10212 TTKRSYEDQ: Predicted 80.0 1.8E+02 0.0038 36.9 21.8 65 985-1049 418-482 (518)
417 PRK11308 dppF dipeptide transp 80.0 1.2 2.5E-05 53.7 2.8 27 147-173 39-65 (327)
418 TIGR02788 VirB11 P-type DNA tr 80.0 0.95 2.1E-05 54.0 2.0 25 149-173 144-168 (308)
419 TIGR02881 spore_V_K stage V sp 80.0 1.4 2.9E-05 51.4 3.2 31 147-177 40-70 (261)
420 PF07106 TBPIP: Tat binding pr 79.9 18 0.00039 39.2 11.6 63 972-1034 71-135 (169)
421 TIGR00176 mobB molybdopterin-g 79.9 1.4 3.1E-05 47.0 3.1 26 152-177 2-27 (155)
422 PRK04195 replication factor C 79.9 1.5 3.3E-05 55.7 3.8 57 117-173 5-63 (482)
423 cd03293 ABC_NrtD_SsuB_transpor 79.8 1.2 2.6E-05 50.3 2.6 27 147-173 28-54 (220)
424 PRK14957 DNA polymerase III su 79.8 2.5 5.4E-05 54.1 5.7 55 117-175 7-64 (546)
425 PF05384 DegS: Sensor protein 79.8 92 0.002 33.4 21.2 15 921-935 27-41 (159)
426 PRK04220 2-phosphoglycerate ki 79.7 2 4.2E-05 50.7 4.3 27 147-173 90-116 (301)
427 PRK14959 DNA polymerase III su 79.7 1.8 4E-05 55.8 4.4 55 117-175 7-64 (624)
428 COG0802 Predicted ATPase or ki 79.7 3 6.4E-05 43.8 5.2 29 147-175 23-51 (149)
429 PRK14974 cell division protein 79.7 2.5 5.4E-05 50.9 5.3 31 147-177 138-168 (336)
430 TIGR00064 ftsY signal recognit 79.6 2.9 6.2E-05 49.0 5.7 46 132-177 46-100 (272)
431 PRK09112 DNA polymerase III su 79.6 2.2 4.8E-05 51.8 4.9 40 136-175 31-71 (351)
432 PF08172 CASP_C: CASP C termin 79.5 15 0.00032 42.4 11.1 44 1007-1050 85-128 (248)
433 TIGR00960 3a0501s02 Type II (G 79.5 1.3 2.8E-05 49.9 2.7 27 147-173 27-53 (216)
434 TIGR02673 FtsE cell division A 79.4 1.3 2.8E-05 49.7 2.7 27 147-173 26-52 (214)
435 PRK15177 Vi polysaccharide exp 79.4 1.3 2.8E-05 49.8 2.8 27 147-173 11-37 (213)
436 KOG1899 LAR transmembrane tyro 79.4 74 0.0016 40.3 17.3 27 1022-1048 281-307 (861)
437 PRK15079 oligopeptide ABC tran 79.4 1.2 2.7E-05 53.6 2.7 27 147-173 45-71 (331)
438 PF00308 Bac_DnaA: Bacterial d 79.4 2.5 5.3E-05 47.9 4.9 41 136-176 19-61 (219)
439 TIGR02868 CydC thiol reductant 79.4 0.77 1.7E-05 59.1 1.0 29 147-175 359-387 (529)
440 PF10498 IFT57: Intra-flagella 79.3 35 0.00077 41.5 14.9 8 638-645 62-69 (359)
441 TIGR01166 cbiO cobalt transpor 79.3 1.3 2.9E-05 48.6 2.7 25 147-171 16-40 (190)
442 PRK14528 adenylate kinase; Pro 79.2 1.5 3.2E-05 48.3 3.0 24 150-173 2-25 (186)
443 COG1123 ATPase components of v 79.2 1.3 2.7E-05 55.9 2.7 28 148-175 316-343 (539)
444 PF03193 DUF258: Protein of un 79.2 1.5 3.2E-05 47.0 2.9 25 148-172 34-58 (161)
445 PRK09473 oppD oligopeptide tra 79.2 1.2 2.6E-05 53.7 2.5 27 147-173 40-66 (330)
446 cd03260 ABC_PstB_phosphate_tra 79.1 1.4 3E-05 50.0 2.9 27 147-173 24-50 (227)
447 COG4619 ABC-type uncharacteriz 79.1 1.3 2.7E-05 47.1 2.2 25 149-173 29-53 (223)
448 PF13166 AAA_13: AAA domain 79.1 2.4E+02 0.0052 37.8 24.7 181 885-1066 280-468 (712)
449 PF00005 ABC_tran: ABC transpo 79.0 1.2 2.6E-05 45.9 2.2 27 148-174 10-36 (137)
450 PF00625 Guanylate_kin: Guanyl 79.0 1.5 3.2E-05 48.1 3.0 26 149-174 2-27 (183)
451 COG2274 SunT ABC-type bacterio 79.0 0.99 2.2E-05 59.5 1.8 32 147-178 497-528 (709)
452 KOG3684 Ca2+-activated K+ chan 79.0 75 0.0016 39.2 17.0 36 817-852 349-384 (489)
453 cd01983 Fer4_NifH The Fer4_Nif 78.9 1.8 3.8E-05 41.1 3.1 25 152-176 2-26 (99)
454 cd03225 ABC_cobalt_CbiO_domain 78.9 1.4 3.1E-05 49.3 2.8 27 147-173 25-51 (211)
455 PRK13341 recombination factor 78.8 2.3 5.1E-05 56.3 5.2 36 138-173 41-76 (725)
456 COG1842 PspA Phage shock prote 78.8 1.3E+02 0.0027 34.4 23.9 15 1030-1044 167-181 (225)
457 PRK14962 DNA polymerase III su 78.7 2.7 5.8E-05 53.1 5.4 54 118-175 6-62 (472)
458 PF00158 Sigma54_activat: Sigm 78.6 1.3 2.7E-05 48.0 2.2 25 147-171 20-44 (168)
459 PRK10416 signal recognition pa 78.6 1.9 4E-05 51.7 3.8 31 147-177 112-142 (318)
460 cd03259 ABC_Carb_Solutes_like 78.6 1.5 3.1E-05 49.3 2.8 27 147-173 24-50 (213)
461 PRK08116 hypothetical protein; 78.6 2.8 6.1E-05 49.0 5.2 46 131-176 95-141 (268)
462 COG2433 Uncharacterized conser 78.6 38 0.00083 42.9 14.8 29 1014-1042 480-508 (652)
463 PRK14969 DNA polymerase III su 78.5 2.7 6E-05 53.9 5.5 55 117-175 7-64 (527)
464 cd01124 KaiC KaiC is a circadi 78.5 1.6 3.4E-05 47.6 3.0 27 151-177 1-27 (187)
465 TIGR01026 fliI_yscN ATPase Fli 78.5 3.9 8.5E-05 51.0 6.7 41 133-173 147-187 (440)
466 PRK11022 dppD dipeptide transp 78.4 1.4 3E-05 53.1 2.7 27 147-173 31-57 (326)
467 PF06008 Laminin_I: Laminin Do 78.4 1.4E+02 0.0031 34.8 20.0 57 993-1049 184-240 (264)
468 cd03255 ABC_MJ0796_Lo1CDE_FtsE 78.3 1.5 3.2E-05 49.4 2.7 27 147-173 28-54 (218)
469 PRK13768 GTPase; Provisional 78.3 1.7 3.8E-05 50.3 3.4 27 151-177 4-30 (253)
470 PRK10646 ADP-binding protein; 78.3 3.3 7.3E-05 43.9 5.2 25 149-173 28-52 (153)
471 PRK14963 DNA polymerase III su 78.3 2 4.3E-05 54.7 4.2 56 118-176 6-63 (504)
472 PF11932 DUF3450: Protein of u 78.2 26 0.00055 40.6 12.9 55 976-1030 45-99 (251)
473 TIGR01359 UMP_CMP_kin_fam UMP- 78.2 1.5 3.1E-05 47.9 2.6 23 152-174 2-24 (183)
474 TIGR00678 holB DNA polymerase 78.1 2.6 5.7E-05 46.3 4.6 36 140-175 4-40 (188)
475 TIGR03608 L_ocin_972_ABC putat 78.1 1.5 3.2E-05 48.9 2.7 26 148-173 23-48 (206)
476 cd03116 MobB Molybdenum is an 78.1 1.9 4.2E-05 46.1 3.4 28 150-177 2-29 (159)
477 PRK07960 fliI flagellum-specif 78.1 5.2 0.00011 49.8 7.4 42 132-173 158-199 (455)
478 PRK00698 tmk thymidylate kinas 78.1 2 4.3E-05 47.6 3.7 28 149-176 3-30 (205)
479 PRK05537 bifunctional sulfate 78.0 1.9 4.1E-05 55.7 3.9 43 131-175 376-418 (568)
480 PRK14958 DNA polymerase III su 78.0 2.9 6.3E-05 53.4 5.5 55 117-175 7-64 (509)
481 TIGR02880 cbbX_cfxQ probable R 78.0 1.6 3.5E-05 51.4 3.0 28 151-178 60-87 (284)
482 cd03229 ABC_Class3 This class 77.9 1.6 3.5E-05 47.6 2.8 27 147-173 24-50 (178)
483 cd03296 ABC_CysA_sulfate_impor 77.9 1.5 3.3E-05 50.1 2.8 27 147-173 26-52 (239)
484 COG3074 Uncharacterized protei 77.9 41 0.00089 30.3 10.6 10 978-987 23-32 (79)
485 PRK06835 DNA replication prote 77.9 3.6 7.8E-05 49.5 5.9 46 131-176 160-210 (329)
486 PRK11176 lipid transporter ATP 77.8 1.3 2.9E-05 57.7 2.5 27 147-173 367-393 (582)
487 cd04508 TUDOR Tudor domains ar 77.8 5.3 0.00012 33.2 5.3 45 10-54 1-48 (48)
488 COG4088 Predicted nucleotide k 77.8 2.2 4.8E-05 46.8 3.6 48 152-199 4-53 (261)
489 PRK15422 septal ring assembly 77.7 36 0.00078 31.7 10.7 67 982-1048 6-72 (79)
490 KOG0243 Kinesin-like protein [ 77.7 2.6E+02 0.0056 38.4 22.7 150 877-1043 406-560 (1041)
491 PLN02796 D-glycerate 3-kinase 77.6 1.5 3.3E-05 52.5 2.6 22 152-173 103-124 (347)
492 KOG4673 Transcription factor T 77.6 2.2E+02 0.0049 36.7 37.4 307 733-1051 409-761 (961)
493 cd02026 PRK Phosphoribulokinas 77.6 1.5 3.2E-05 51.3 2.6 22 152-173 2-23 (273)
494 PRK10436 hypothetical protein; 77.6 1.5 3.2E-05 55.1 2.7 22 152-173 221-242 (462)
495 PF05262 Borrelia_P83: Borreli 77.5 1.4E+02 0.0031 37.7 19.6 164 881-1046 180-345 (489)
496 KOG0978 E3 ubiquitin ligase in 77.5 2.5E+02 0.0054 37.1 31.8 238 811-1053 321-562 (698)
497 KOG1970 Checkpoint RAD17-RFC c 77.5 2.7 5.8E-05 52.3 4.7 61 113-173 69-134 (634)
498 TIGR03017 EpsF chain length de 77.4 2E+02 0.0044 36.1 21.8 170 881-1050 163-346 (444)
499 PRK15422 septal ring assembly 77.4 42 0.0009 31.3 10.9 69 973-1041 4-72 (79)
500 PRK06305 DNA polymerase III su 77.4 3.2 6.9E-05 52.2 5.5 54 118-173 9-63 (451)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.5e-240 Score=2226.53 Aligned_cols=1364 Identities=34% Similarity=0.530 Sum_probs=1056.5
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEEc--CCEEEEE--eCCCcEEEEecccccCCCC-CCCCCCcCccccCCCCChHHHH
Q 000421 5 DNIIVGSHVWVEDPVLAWINGEVMWIN--GQEVHVN--CTNGKKVVTSVSKVFPEDT-EAPAGGVDDMTKLSYLHEPGVL 79 (1530)
Q Consensus 5 ~~~~~g~~vw~~~~~~~w~~~~v~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~L~~l~e~~vL 79 (1530)
.++.+|+.||+|+.+.+|+.|.|.+.+ ++.++.. ..+|....++...+..... .+..+++||||.|+|||||+||
T Consensus 4 ~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl 83 (1463)
T COG5022 4 TNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVL 83 (1463)
T ss_pred cccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHH
Confidence 468999999999999999999999743 3333322 2455444444433221111 1146899999999999999999
Q ss_pred HHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCC
Q 000421 80 QNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESG 159 (1530)
Q Consensus 80 ~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSG 159 (1530)
|||++||..++||||+|.||||||||+.+| ||+.++|+.|++.+..+++|||||||++||++|...++|||||||||||
T Consensus 84 ~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESG 162 (1463)
T COG5022 84 HNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESG 162 (1463)
T ss_pred HHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCC
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEEecCCCcceeeeEeeeec
Q 000421 160 AGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLL 239 (1530)
Q Consensus 160 aGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~tyLL 239 (1530)
|||||+||+||+|||++++.++...++||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+||||
T Consensus 163 AGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLL 242 (1463)
T COG5022 163 AGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLL 242 (1463)
T ss_pred CCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhh
Confidence 99999999999999999987766667899999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCcceeehhcccC-CHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHHHhhhhHcccCHHHHHH
Q 000421 240 ERSRVCQISDPERNYHCFYLLCAA-PHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEA 318 (1530)
Q Consensus 240 EksRvv~~~~~ErnfHiFYql~~~-~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1530)
||||||+|+.+|||||||||||++ +++.++.+++..|.+|+||++|+|..++|+||+++|..|+.||+++||+.++|..
T Consensus 243 EKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~ 322 (1463)
T COG5022 243 EKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQ 322 (1463)
T ss_pred hhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHH
Confidence 999999999999999999999995 4445556666899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCCceEeccCChhhHHHhHH
Q 000421 319 IFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRD 398 (1530)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~rd 398 (1530)
||++||||||||||+|..+++ +++.+.+. ..++.||.|||||+..|.+||++|.|.+++|.|.+|+|..||..+||
T Consensus 323 IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ird 398 (1463)
T COG5022 323 IFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRD 398 (1463)
T ss_pred HHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHH
Confidence 999999999999999998764 45555543 36999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHHHhhhhHhhhhhhHHHhhhcC
Q 000421 399 ALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREE 478 (1530)
Q Consensus 399 alak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~vf~~eq~ey~~E~ 478 (1530)
||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++||+||.+||
T Consensus 399 slAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~ 478 (1463)
T COG5022 399 SLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEG 478 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999877778999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccChHHHHHHhhc-CcccccccchhhcCCCCCchHHHHHHHHHHhc--CCCCCCCCCCCCCceEEEeecceee
Q 000421 479 INWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNRFSKPKLSRTDFTILHYAGEVT 555 (1530)
Q Consensus 479 i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~f~~p~~~~~~F~i~Hyag~V~ 555 (1530)
|+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+....|+|+||||+|+
T Consensus 479 IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVe 558 (1463)
T COG5022 479 IEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVE 558 (1463)
T ss_pred CcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccce
Confidence 99999999999999999997 25599999999999999999999999999986 5678999999999999999999999
Q ss_pred ecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCC
Q 000421 556 YQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNN 635 (1530)
Q Consensus 556 Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~ 635 (1530)
|+++||++||+|++++++++|+.+|+|+|+..||++.... .+.++++|+|+.||.||++||.+|++|+||||||||||.
T Consensus 559 Y~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~-~~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~ 637 (1463)
T COG5022 559 YDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENI-ESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNE 637 (1463)
T ss_pred eeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhc-cccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCc
Confidence 9999999999999999999999999999999999854333 344688999999999999999999999999999999999
Q ss_pred CCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccccccc-----CCCchHHHHHHHHHHhCCC--
Q 000421 636 VLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-----GNYDDQVACQMILDKKGLK-- 708 (1530)
Q Consensus 636 ~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-----~~~~~~~~~~~ll~~~~~~-- 708 (1530)
.|.|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.||++|.|...+ +..|.+.+|+.||..+.++
T Consensus 638 ~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~ 717 (1463)
T COG5022 638 EKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSS 717 (1463)
T ss_pred ccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChh
Confidence 999999999999999999999999999999999999999999999999997432 2246799999999998776
Q ss_pred CceeccceeecccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhchhhHHHHHHHHHHHHHHH
Q 000421 709 GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAAL 788 (1530)
Q Consensus 709 ~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~~~~~lRr~~AAi 788 (1530)
.||+|+||||||+|+++.||.+|...++.+++.||+.|||++.|++|.+..+.+..+|...+|+..|+++..--...+++
T Consensus 718 ~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1463)
T COG5022 718 KYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFI 797 (1463)
T ss_pred heeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998776655567999
Q ss_pred HHhhHHHHHHHHHhhHHHHhhHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 789 KIQTNFRAYVAQRSYLTVRSSAMILQ-TGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRC 867 (1530)
Q Consensus 789 ~IQ~~~Rg~~~Rr~y~~~r~a~i~IQ-s~~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~~~R~ 867 (1530)
.+|..||....|+.|+.....++.+| ..+|....+.........++++.+|+.||.+..+++|..+.+..+.+|+.+|.
T Consensus 798 ~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~ 877 (1463)
T COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV 877 (1463)
T ss_pred HhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999 67777777776677777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 868 RVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKE 947 (1530)
Q Consensus 868 ~~arkel~~lk~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e 947 (1530)
..|++++..++.+.+++..+......++.++.++...++......... +.+..+.++..+..
T Consensus 878 ~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~---k~e~~a~lk~~l~~--------------- 939 (1463)
T COG5022 878 ELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLLNN--------------- 939 (1463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHH---HHHHHHHHHHHhhc---------------
Confidence 999999999999999999999999999999988877665311000000 00111111111111
Q ss_pred HHHHHHHHhhCCccccccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 000421 948 REAARKAIKEAPPVIKETPVII-QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELT---KKLKDAEKR 1023 (1530)
Q Consensus 948 ~~~~~~~~~e~~~~~~e~~~l~-~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~---~el~~le~~ 1023 (1530)
. .+++.+... ....++.+|.....+|++........+...+....+.....+++. +++.+...+
T Consensus 940 ----------~--d~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~~~~ 1007 (1463)
T COG5022 940 ----------I--DLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQ 1007 (1463)
T ss_pred ----------c--cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 0 000100000 011133444444444444444443333333332222222222111 111111111
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcChhhhhhhhCccccccccCCCCCCC--CCCc-cccccCcccccCC
Q 000421 1024 VDELQDSVQRLAEK---VSNLESENQVLRQQALAISPTAKALAARPKTTIIQRTPVNGNI--LNGE-MKKVHDSVLTVPG 1097 (1530)
Q Consensus 1024 i~~Lq~el~~leek---i~~Le~E~~~L~qq~l~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~ 1097 (1530)
...+++....+++. +..+....+..... +. ...+..+..+.. ...+ ....+..... +.
T Consensus 1008 ~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~-----~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~ 1071 (1463)
T COG5022 1008 YGALQESTKQLKELPVEVAELQSASKIISSE-----ST----------ELSILKPLQKLKGLLLLENNQLQARYKAL-KL 1071 (1463)
T ss_pred hhhhhhhhhhcccccchhhhhhhhhhhhccc-----hh----------hhhccCcccchhhhhhHHHHHhhhhHhhh-hh
Confidence 11112111111111 22222211111000 00 000000000000 0000 0000000000 00
Q ss_pred CCCCCCCccccccchhhhhccHHHHHHhhh-ccCCCCC-CccchHHHH-HHHHhcccc-cccchHHHHHHHHHHHHhhhh
Q 000421 1098 VRDVEPEHRPQKTLNEKQQENQDLLIKCIS-QDLGFSG-GKPVAACLI-YKCLLHWRS-FEVERTSIFDRIIQTISGAIE 1173 (1530)
Q Consensus 1098 ~~~~~~~~~~~~~~~e~~~~~~~~li~~l~-~~~~~~~-~kp~pA~il-f~cl~~~~~-~~~~~~~ll~~ii~~I~~~v~ 1173 (1530)
.+ +....-.....+.+....+.+.+. +++.+.+ .-+.||..+ +....+|++ ...+...++...+..++.+..
T Consensus 1072 ~r----~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~ 1147 (1463)
T COG5022 1072 RR----ENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQ 1147 (1463)
T ss_pred cC----cccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhc
Confidence 00 000000011112222222333332 2222221 112255443 334446665 444556666666666665544
Q ss_pred cc---CCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcccccCCcccccccccccccCCCCCCCcccccccccccchhh
Q 000421 1174 VH---DNNDRLSYWLSNASTLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGIPFLNSRILSGLDDL 1250 (1530)
Q Consensus 1174 ~~---~d~~~l~fWLSN~~~Ll~~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~ 1250 (1530)
.- +-.-.+.||.+|...+++.---. ...+.+... .+++ +.+ + .+..+++
T Consensus 1148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~--------------d~~---~--~~s~s~v 1199 (1463)
T COG5022 1148 KLSVLQLELDGLFWEANLEALPSPPPFA-------ALSEKRLYQ--SALY--------------DEK---S--KLSSSEV 1199 (1463)
T ss_pred cccchhccccccccccccccCCCCCchh-------hcchhhhhH--hhhh--------------ccc---c--cccHHHH
Confidence 22 22345789999999887411000 000000000 0000 000 0 0001222
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-c-CCCCCccccccCCCcchhHhhhhhhhhHHHHHHH
Q 000421 1251 RQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCI-Q-APRTSRASLIKGRSQANAVAQQALIAHWQSIVKS 1328 (1530)
Q Consensus 1251 ~~v~~~~~~~~fkqqL~~l~~~iy~~l~~~~~~~L~~~L~~~i-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 1328 (1530)
. ..+..+..+..++|..|.... ++.+.+...+ + ......+++. .++..+..++..+.++++.+
T Consensus 1200 ~---------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~ 1264 (1463)
T COG5022 1200 N---------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKFDTPASMSNEKLLSL 1264 (1463)
T ss_pred H---------HHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcccCcccCcHHHHHHH
Confidence 2 225678888888898887665 3333332111 0 0001111110 01112233345677889999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCCccchhhHHHhchHHHHHHHhhcCCCcccchHHHhHH
Q 000421 1329 LNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRH 1408 (1530)
Q Consensus 1329 L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~ 1408 (1530)
++.+.+.++.+.+.+.+....++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+.+||+.++ ...+..+|++
T Consensus 1265 ~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~~ 1341 (1463)
T COG5022 1265 LNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEELEE 1341 (1463)
T ss_pred HHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 4556689999
Q ss_pred HHHHHHHHhhCCCCccCHHHHHhccCCCCCHHHHHHHHhcCcCCCCCCCCCCHHHHHHHHhhhh
Q 000421 1409 IRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMM 1472 (1530)
Q Consensus 1409 i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~ 1472 (1530)
++||++.+++.+++..++++++ +.|.+|+|.|+.+|+.+|.|.++| .++|.++.+.|.+...
T Consensus 1342 l~q~~k~~~~~~~dl~~~~~~~-~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1342 LIQAVKVLQLLKDDLNKLDELL-DACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred HHhhhhhhhhhhCCHHHHHHHH-HHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 9999999999988888888885 999999999999999999999998 5999999977655544
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=9.2e-203 Score=1912.72 Aligned_cols=769 Identities=35% Similarity=0.553 Sum_probs=714.3
Q ss_pred CcccccCcEEEE-------eCCCCCeEeEEEE-EEcCCEEEEEe---CCCcEEEEecccccCCCCCCCCCCcCccccCCC
Q 000421 4 PDNIIVGSHVWV-------EDPVLAWINGEVM-WINGQEVHVNC---TNGKKVVTSVSKVFPEDTEAPAGGVDDMTKLSY 72 (1530)
Q Consensus 4 ~~~~~~g~~vw~-------~~~~~~w~~~~v~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 72 (1530)
..++.+|+.||+ +|++++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+++..+.+++||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 345678999998 6789999999999 78899888875 578999999999999998766789999999999
Q ss_pred CChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcC-CcCCCCcchhhHHHHHHHHHHhcCCCeE
Q 000421 73 LHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA-AFGELSPHVFAVGDAAYRAMINEGKSNS 151 (1530)
Q Consensus 73 l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~-~~~~l~PHifaiA~~Ay~~m~~~~~~Qs 151 (1530)
||||+|||||+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999997 9999999999985 5789999999999999999999999999
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEEecCCCccee
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 231 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~g 231 (1530)
|||||||||||||+||+||+|||.+++.. ...+|+++|++|||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999986532 2357999999999999999999999999999999999999999999999
Q ss_pred eeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHHHhhhhHcc
Q 000421 232 AAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVG 310 (1530)
Q Consensus 232 a~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg 310 (1530)
|+|.||||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++|+||+++|.+|+.||+.||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5889999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcCcccccCCC---cccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCCceEecc
Q 000421 311 ISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRT 387 (1530)
Q Consensus 311 ~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~ 387 (1530)
|+++++.+||+|||||||||||+|.+... .|++.+.+. +...++.||+|||||+++|.++||+|++.++++.+++|
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 345555442 34579999999999999999999999999999999999
Q ss_pred CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHHHhhhhHhhh
Q 000421 388 LDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVF 467 (1530)
Q Consensus 388 l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~vf 467 (1530)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766778999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCCCCC-CCCceE
Q 000421 468 KMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKL-SRTDFT 546 (1530)
Q Consensus 468 ~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~~-~~~~F~ 546 (1530)
+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++++++|++|.+|+. ....|+
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~ 581 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFV 581 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 467999
Q ss_pred EEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHcccCCe
Q 000421 547 ILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPH 626 (1530)
Q Consensus 547 i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~h 626 (1530)
|+||||+|+|+++||++||+|+++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+||
T Consensus 582 I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ph 661 (821)
T PTZ00014 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPH 661 (821)
T ss_pred EEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998654333334466899999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccccccc-CCCchHHHHHHHHHHh
Q 000421 627 YIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMILDKK 705 (1530)
Q Consensus 627 ~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll~~~ 705 (1530)
||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|.+.... ...|+++.|+.||+.+
T Consensus 662 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~ 741 (821)
T PTZ00014 662 FIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERS 741 (821)
T ss_pred EEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999876543 2358999999999998
Q ss_pred CC--CCceeccceeecccchhhHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhchhhHHHH
Q 000421 706 GL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKL 777 (1530)
Q Consensus 706 ~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~~ 777 (1530)
++ ++|++|+||||||+|+++.||.+|.+++. .+++.||++||||++|++|++++.+++.||++|||+++++.
T Consensus 742 ~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 742 GLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999999999999998888764 67888999999999999888887777777777777776653
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.8e-187 Score=1754.82 Aligned_cols=674 Identities=87% Similarity=1.326 Sum_probs=648.0
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHH
Q 000421 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 141 (1530)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~ 141 (1530)
+|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|+||++++|..|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEE
Q 000421 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 221 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l 221 (1530)
+|.+.++||||||||||||||||++|++|+|||.+++..+..+.+|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555557899999999999999999999999999999999999
Q ss_pred EecCCCcceeeeEeeeeccCccccccCCCCCcceeehhcccCCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000421 222 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1530)
Q Consensus 222 ~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
+||.+|.|+||+|.+|||||||||.|++||||||||||||++++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000421 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
|+.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...++.||.||||++++|.++|++|++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666665556789999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHHHhh
Q 000421 382 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQH 461 (1530)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~ 461 (1530)
+.+++++++++|..+||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||||||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred hhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCCCCCC
Q 000421 462 FNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS 541 (1530)
Q Consensus 462 f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~~~ 541 (1530)
|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHc
Q 000421 542 RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1530)
Q Consensus 542 ~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~Lm~~l~ 621 (1530)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987655544556789999999999999999999
Q ss_pred ccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccccccCCCchHHHHHHH
Q 000421 622 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMI 701 (1530)
Q Consensus 622 ~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~l 701 (1530)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988665556889999999
Q ss_pred HHHhCCCCceeccceeecccchhhHHHHHHHHHh
Q 000421 702 LDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1530)
Q Consensus 702 l~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l 735 (1530)
|+.++.++|++|+||||||+|+++.||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.1e-186 Score=1714.09 Aligned_cols=754 Identities=63% Similarity=0.997 Sum_probs=723.4
Q ss_pred CCCCCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHH
Q 000421 58 EAPAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGD 137 (1530)
Q Consensus 58 ~~~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~ 137 (1530)
+.|+.|+||||.|+|||||+|||||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+||||+
T Consensus 4 ~~~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~ 82 (862)
T KOG0160|consen 4 NPPPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAE 82 (862)
T ss_pred CCCCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHH
Confidence 3344799999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccce
Q 000421 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGK 217 (1530)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk 217 (1530)
.||+.|..++.|||||||||||||||+++|++|+|||+++++ ..+++||++||+|||||||||||||+||||||||||
T Consensus 83 ~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK 160 (862)
T KOG0160|consen 83 EAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGK 160 (862)
T ss_pred HHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhh
Confidence 999999999999999999999999999999999999999987 345789999999999999999999999999999999
Q ss_pred EEEEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhcccCCHhhHhhcCCCCCCccccccCCCccccCCCCcHH
Q 000421 218 FVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAH 297 (1530)
Q Consensus 218 ~~~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~ 297 (1530)
|++|+||.+|+|+||+|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+.
T Consensus 161 ~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 161 VIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999954499999999999999999999999999999999
Q ss_pred HHHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEE
Q 000421 298 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 377 (1530)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1530)
+|..|+.||..+||+.++|..||++||||||||||+|..+.+.+++.+.++ ++..+|.|||++.+.|..||+.|.+
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i 316 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKI 316 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998776655555443 7899999999999999999999999
Q ss_pred EeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCCCeEEEEecccCCCCCCCCChhHHHhhhhhh
Q 000421 378 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQ-DPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1530)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 456 (1530)
.+++++|++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|++|||||||||||||
T Consensus 317 ~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanE 396 (862)
T KOG0160|consen 317 LTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANE 396 (862)
T ss_pred hcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHH
Confidence 999999999999999999999999999999999999999999997 4455899999999999999999999999999999
Q ss_pred HHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCC
Q 000421 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFS 536 (1530)
Q Consensus 457 kLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~ 536 (1530)
||||+||+|||+.||+||.+|||+|+.|+|.||++|+++||+ |.||++||||+|++|.++|++|..||++.+.+|+.|.
T Consensus 397 kLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~ 475 (862)
T KOG0160|consen 397 KLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFT 475 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccC
Confidence 999999999999999999999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHH
Q 000421 537 KPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSL 616 (1530)
Q Consensus 537 ~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L 616 (1530)
+|+++++.|+|.||||+|+|+++|||+||||+|++++.+++..|+++|+..+|++..+++.+.++++||+++|+.+|..|
T Consensus 476 kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~L 555 (862)
T KOG0160|consen 476 KPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISL 555 (862)
T ss_pred CCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976666555668899999999999999
Q ss_pred HHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccccccCCCchHH
Q 000421 617 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQV 696 (1530)
Q Consensus 617 m~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~ 696 (1530)
|.+|++|+||||||||||..+.|+.|++.+|++|||||||||+|||+++|||.||+|.||+.||++|+| ... ..|++.
T Consensus 556 m~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~ 633 (862)
T KOG0160|consen 556 METLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLS 633 (862)
T ss_pred HHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 333 346699
Q ss_pred HHHHHHHHhCCCCceeccceeecccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhchhhHHH
Q 000421 697 ACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARK 776 (1530)
Q Consensus 697 ~~~~ll~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~ 776 (1530)
.|+.+|+..+.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+++||+++|+
T Consensus 634 ~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 634 LCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHH
Q 000421 777 LYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 824 (1530)
Q Consensus 777 ~~~~lRr~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr 824 (1530)
..+ +..||+.||+.||+|..|++|..++.+++.+|+.+||+++|.
T Consensus 714 --~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 --ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred --hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 678999999999999999999999999999999999998887
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.2e-183 Score=1792.14 Aligned_cols=775 Identities=42% Similarity=0.718 Sum_probs=715.7
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEEcCCEEEEEeCCCcEEE-EecccccCCCCCCCCCCcCccccCCCCChHHHHHHHH
Q 000421 5 DNIIVGSHVWVEDPVLAWINGEVMWINGQEVHVNCTNGKKVV-TSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLA 83 (1530)
Q Consensus 5 ~~~~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vL~~L~ 83 (1530)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ |+.++++|++|| .++.++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456778899999999999999999987777999998888776 999999999875 678999999999999999999999
Q ss_pred HhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCch
Q 000421 84 TRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKT 163 (1530)
Q Consensus 84 ~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT 163 (1530)
.||.++.||||+|..||+||||+++| ||++++++.|+|+.+.+|||||||||+.||+.|+.+++||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCC---ccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEEecCCCcceeeeEeeeecc
Q 000421 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLE 240 (1530)
Q Consensus 164 e~~k~i~~yla~~~~~~~~~---~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~tyLLE 240 (1530)
|+||.||+|||++++++... +.+++++|+++||||||||||+|++|+|||||||||.|+||.+|.|+||.|++||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 258899999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCcceeehhccc-CCHhhHhhcCCCC-CCccccccCCCccccCCCCcHHHHHHHHhhhhHcccCHHHHHH
Q 000421 241 RSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGS-PKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEA 318 (1530)
Q Consensus 241 ksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~-~~~~~yl~~~~~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~ 318 (1530)
||||++|+++|||||||||+++ +++..+..|.|.+ +.+|.|+.++.. .+||+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888899999976 899999999886 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCCceEeccCChhhHHHhHH
Q 000421 319 IFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRD 398 (1530)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~rd 398 (1530)
||+|+||||||||+.|......+.+.+.+. ...+.+|.||||+...|.++++++.+.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 999999999999999998655556555543 35899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHHHhhhhHhhhhhhHHHhhhcC
Q 000421 399 ALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREE 478 (1530)
Q Consensus 399 alak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~vf~~eq~ey~~E~ 478 (1530)
||||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877778999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHh-cCCCCCCCCC--CCCCceEEEeeccee
Q 000421 479 INWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKPK--LSRTDFTILHYAGEV 554 (1530)
Q Consensus 479 i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~f~~p~--~~~~~F~i~Hyag~V 554 (1530)
|.|.||+| .|-||||||||+ |+||+++|||||++|++||.+|+.||...| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 688999999995 669999999999999999999999999999 8999999997 456899999999999
Q ss_pred eecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCC-----------CccCCCCCcchhHHHHHHHHHHHHHHccc
Q 000421 555 TYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNAT 623 (1530)
Q Consensus 555 ~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~-----------~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t 623 (1530)
.|+++||++||+|++++.++.+|+.|++++|+.||.+... ..+|++.|.||+..||.||+.||++|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987221 13345567899999999999999999999
Q ss_pred CCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccccccc-CCCchHHHHHHHH
Q 000421 624 APHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMIL 702 (1530)
Q Consensus 624 ~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll 702 (1530)
+|||||||.||+.|.|+.+|.+.|+.||||.||||+|||+|.|||+|++|.+|..||.++.+.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955555433 3467799999999
Q ss_pred HHhCCC--CceeccceeecccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhchhhHHHHHHH
Q 000421 703 DKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQ 780 (1530)
Q Consensus 703 ~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~~~~~ 780 (1530)
..+..+ -|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+.
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr---------------------- 795 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKR---------------------- 795 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 988654 69999999999999999999999999999988888888888887776332
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhHHHHh
Q 000421 781 LRREAAALKIQTNFRAYVAQRSYLTVRS 808 (1530)
Q Consensus 781 lRr~~AAi~IQ~~~Rg~~~Rr~y~~~r~ 808 (1530)
..+..|+.+||+++|.|+..+.|.+++-
T Consensus 796 ~~~~~ai~~iQ~N~r~~~~lr~w~W~~L 823 (1930)
T KOG0161|consen 796 LQQLDAIKVIQRNIRAYLKLRTWPWWRL 823 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 2234577788888888887777777654
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5e-183 Score=1725.06 Aligned_cols=664 Identities=51% Similarity=0.857 Sum_probs=626.1
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000421 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||++||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC--CCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEE
Q 000421 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~--~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1530)
|.++++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 224689999999999999999999999999999999999
Q ss_pred EEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000421 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1530)
Q Consensus 221 l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1530)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000421 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1530)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
..|+.||+.|||+++++.+||+|||||||||||+|.+..+ +++.+.. +...++.||+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987543 3323322 234699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCeEEEEecccCCCCCCCCChhHHHhhhhhh
Q 000421 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD---PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 456 (1530)
++|.++++++++||.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhc--CCCC
Q 000421 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNR 534 (1530)
Q Consensus 457 kLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 534 (1530)
|||++||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.|+ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred CCCCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCc-----------------c
Q 000421 535 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-----------------S 597 (1530)
Q Consensus 535 f~~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~-----------------~ 597 (1530)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532110 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHH
Q 000421 598 KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 677 (1530)
Q Consensus 598 ~~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1530)
+..+.+||+++|+.||+.||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 12256899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccCCCchHHHHHHHHHHhCC--CCceeccceeecccchhhHHHHHH
Q 000421 678 NRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
.||++|+|.......|+++.|+.||+.+.. +.|++|+||||||+++++.||.+|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998654456899999999999875 589999999999999999999875
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.1e-182 Score=1713.91 Aligned_cols=661 Identities=46% Similarity=0.766 Sum_probs=625.6
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000421 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEE
Q 000421 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1530)
|.++++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997643 46999999999999999999999999999999999999
Q ss_pred ecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000421 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCC--cccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000421 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
|+.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+. ..++.||.||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999986532 345556543 4799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHH
Q 000421 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1530)
+++.+++|++++||..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000421 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1530)
Q Consensus 459 q~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p 538 (1530)
|++||+|||+.||++|.+|||+|.+|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++|+.|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCc-cCCCCCcchhHHHHHHHHHH
Q 000421 539 KL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1530)
Q Consensus 539 ~~-~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~-~~~~~~~tv~~~f~~sl~~L 616 (1530)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+ ..+.+.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 45799999999999999999999999999999999999999999999998754322 12336689999999999999
Q ss_pred HHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccccccC--CCch
Q 000421 617 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG--NYDD 694 (1530)
Q Consensus 617 m~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1530)
|++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..|.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875422 3477
Q ss_pred HHHHHHHHHHhCC--CCceeccceeecccchhhHHHHHH
Q 000421 695 QVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 695 ~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
++.|+.+++.+.+ ++|++|+||||||+++++.||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8999999998765 589999999999999999999865
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.9e-182 Score=1720.27 Aligned_cols=667 Identities=45% Similarity=0.757 Sum_probs=626.7
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000421 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~A 139 (1530)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++|+.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCC------CccCHHHHHHhhchHHHhhccccccCCCCCC
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV------EGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~------~~~~ie~~vl~snpilEaFGNAkT~~N~NSS 213 (1530)
|+.|...++||||||||||||||||++|+||+|||.+++.... ....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 9999999999999999999999999999999999999865321 2357999999999999999999999999999
Q ss_pred ccceEEEEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCC-CccccccCCCccccC
Q 000421 214 RFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSP-KSFHYLNQSNCYELD 291 (1530)
Q Consensus 214 Rfgk~~~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~-~~~~yl~~~~~~~~~ 291 (1530)
|||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78999999999876 89999999876 478
Q ss_pred CCCcHHHHHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHh
Q 000421 292 GVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDA 371 (1530)
Q Consensus 292 ~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1530)
++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..+..||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987544455555543 47999999999999999999
Q ss_pred hceeEEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHh
Q 000421 372 LIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCI 451 (1530)
Q Consensus 372 l~~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1530)
||+|++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred hhhhhHHHhhhhHhhhhhhHHHhhhcCCcccccccc-ChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhc
Q 000421 452 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFI-DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA 530 (1530)
Q Consensus 452 NyaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~-dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~ 530 (1530)
|||||||||+|+++||+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999994 9999999999999999999999999999999999999999999
Q ss_pred CCCCC--CCCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC----------ccC
Q 000421 531 KNNRF--SKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE----------SSK 598 (1530)
Q Consensus 531 ~~~~f--~~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~----------~~~ 598 (1530)
+++.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..... +.+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 445556789999999999999999999999999999999999999999999999754221 112
Q ss_pred CCCCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHH
Q 000421 599 SSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVN 678 (1530)
Q Consensus 599 ~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ 678 (1530)
.++++||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcccccccc-cCCCchHHHHHHHHHHhCCC--CceeccceeecccchhhHHHHHH
Q 000421 679 RFGILAPEVL-EGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
||++|++... ....|.++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998753 23468899999999998874 89999999999999999999876
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=5.8e-181 Score=1702.00 Aligned_cols=662 Identities=44% Similarity=0.767 Sum_probs=626.5
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000421 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEE
Q 000421 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1530)
|..+++||||||||||||||||++|++|+|||.++++.. ....|+++|+++||||||||||||++|+||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2356999999999999999999999999999999999999
Q ss_pred ecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000421 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000421 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
|+.||+.|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 3344443 3479999999999999999999999999998
Q ss_pred ----ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCeEEEEecccCCCCCCCCChhHHHhhhhhh
Q 000421 382 ----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1530)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 456 (1530)
|.+++|+++++|..+||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CcccccccchhhcCCC-CCchHHHHHHHHHHhcCCCC
Q 000421 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFSQKLCQTFAKNNR 534 (1530)
Q Consensus 457 kLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 534 (1530)
|||++||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHH
Q 000421 535 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1530)
Q Consensus 535 f~~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~ 614 (1530)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+...... ...+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-~~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDAD-SKKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccccc-ccCCCCcHHHHHHHHHH
Confidence 99888888999999999999999999999999999999999999999999999998543322 22356899999999999
Q ss_pred HHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccccc-cCCCc
Q 000421 615 SLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYD 693 (1530)
Q Consensus 615 ~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1530)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|++... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23468
Q ss_pred hHHHHHHHHHHhCC--CCceeccceeecccc-hhhHHHHHH
Q 000421 694 DQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1530)
Q Consensus 694 ~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 731 (1530)
+++.|+.||..+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999876 489999999999998 689999865
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.9e-181 Score=1696.33 Aligned_cols=657 Identities=48% Similarity=0.806 Sum_probs=615.3
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000421 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~A 139 (1530)
..+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|++.. .+||||||||++|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999998764 4799999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEE
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1530)
|+.|..+++||||||||||||||||++|+||+|||.+++. ..|+++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 36999999999999999999999999999999999
Q ss_pred EEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHH
Q 000421 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000421 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1530)
|..|+.||+.|||+++++..||+|||||||||||+|.+..+.+.+.+.+ .+.+..||.||||++++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 9999999999999999999999999999999999998654333333332 3469999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCeEEEEecccCCCCCCCCChhHHHhhhhhhH
Q 000421 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINFTNEK 457 (1530)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEk 457 (1530)
++++.++++++++||..+||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987543 46799999999999999999999999999999
Q ss_pred HHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCC
Q 000421 458 LQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK 537 (1530)
Q Consensus 458 Lq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~ 537 (1530)
|||+|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~ 474 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRG 474 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCC-----CC------CccCCCCCcchh
Q 000421 538 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPL-----PE------ESSKSSKFSSIG 606 (1530)
Q Consensus 538 p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~-----~~------~~~~~~~~~tv~ 606 (1530)
|+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. .+.+.++..||+
T Consensus 475 ~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~ 551 (677)
T cd01383 475 ER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVG 551 (677)
T ss_pred CC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchH
Confidence 75 578999999999999999999999999999999999999999876 55321 10 011223568999
Q ss_pred HHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccc
Q 000421 607 SRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPE 686 (1530)
Q Consensus 607 ~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~ 686 (1530)
++|+.||+.||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++.
T Consensus 552 ~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 631 (677)
T cd01383 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631 (677)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCCchHHHHHHHHHHhCC--CCceeccceeecccchhhHHHHHH
Q 000421 687 VLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 687 ~~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
... ..|++..|+.+|+.+++ ++|++|+||||||+|+++.||..|
T Consensus 632 ~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 632 NIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 543 35788999999999876 489999999999999999999865
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.7e-181 Score=1561.99 Aligned_cols=729 Identities=40% Similarity=0.689 Sum_probs=676.8
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHH
Q 000421 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1530)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay 140 (1530)
..|++|++-|+.++|++++.||+.||..+.||||+|+|||+||||+.++ ||+++.|+.|+|....+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 3689999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCC-CccCHHHHHHhhchHHHhhccccccCCCCCCccceEE
Q 000421 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~-~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1530)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|+|||||||||||||.|||||||||||+
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999875542 1246778899999999999999999999999999999
Q ss_pred EEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCC-CCCccccccCCCccccCCCCcHH
Q 000421 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDAH 297 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~-~~~~~~yl~~~~~~~~~~~dd~~ 297 (1530)
.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.++..|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999995 79999999999 78899999999
Q ss_pred HHHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEE
Q 000421 298 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 377 (1530)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1530)
+|..++.||.++||+++|+.++|+|+|||||||||+|.+.. |++.+.+. ..+..+|+||++.+++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 45555443 47999999999999999999999999
Q ss_pred EeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-----CCCCeEEEEecccCCCCCCCCChhHHHhh
Q 000421 378 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-----PDSKSIIGVLDIYGFESFKCNSFEQFCIN 452 (1530)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfeQlciN 452 (1530)
.+++|.+.++++++||.++||||||++|+|||.|||.+||.+|... ....+.||||||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999642 12358899999999999999999999999
Q ss_pred hhhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCC-CchHHHHHHHHHHhcC
Q 000421 453 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFSQKLCQTFAK 531 (1530)
Q Consensus 453 yaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~~ 531 (1530)
|+||||||.|++-++|.|||||.+|||+|..|+|.+|.-++||+|.+..||+++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCCCCCC-------CCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCC-CCCc
Q 000421 532 NNRFSKPK-------LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKS-SKFS 603 (1530)
Q Consensus 532 ~~~f~~p~-------~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~-~~~~ 603 (1530)
|++|..-+ +.-.+|-|.||||+|+|++.||++||+|.+..|+-.+|..|+++++++||+....+.... .+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 234689999999999999999999999999999999999999999999998754332222 3668
Q ss_pred chhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccc
Q 000421 604 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1530)
Q Consensus 604 tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1530)
|+|++||.|+..||++|-+-+|+||||||||+.|.|+.||..+|.+|.++.|+||.+|++++||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc--CCCchHHHHHHHHHHhCC-CCceeccceeecccch-hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 000421 684 APEVLE--GNYDDQVACQMILDKKGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLR 759 (1530)
Q Consensus 684 ~~~~~~--~~~~~~~~~~~ll~~~~~-~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r 759 (1530)
++..++ ...++++.|+.+++..|. +++.+|+||||+|... +-.||..|.+++...++.||+.||||++|.+|++|+
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987543 234679999999999997 5899999999999865 578999999999999999999999999999999999
Q ss_pred cchhhhhhhhchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q 000421 760 NAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTV 806 (1530)
Q Consensus 760 ~a~i~IQa~~Rg~laR~~~~~lRr~~AAi~IQ~~~Rg~~~Rr~y~~~ 806 (1530)
.+++.|+ |||.+. +| .++..||+.+||+..++.|.+-
T Consensus 720 a~~~ii~-wyR~~K-------~k--s~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYK-------LK--SYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHH-HHHHHH-------HH--HHHHHHHHHHHhhhhccccCCC
Confidence 9999998 887432 22 5677899999999999988753
No 12
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4.4e-180 Score=1691.58 Aligned_cols=661 Identities=41% Similarity=0.715 Sum_probs=617.7
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHH
Q 000421 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 141 (1530)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~ 141 (1530)
+|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++.+.+++||||||||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEE
Q 000421 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 221 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l 221 (1530)
.|...++||||||||||||||||++|++|+|||.+++.. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 25699999999999999999999999999999999999
Q ss_pred EecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHH
Q 000421 222 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 300 (1530)
Q Consensus 222 ~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~ 300 (1530)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999899999999999
Q ss_pred HHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCC--cccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000421 301 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1530)
Q Consensus 301 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1530)
.|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.+ ...++.||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999986432 22334443 3469999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHH
Q 000421 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1530)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkL 458 (1530)
+++|.+.+|+++++|..+||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4567999999999999999999999999999999
Q ss_pred HhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCCC
Q 000421 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1530)
Q Consensus 459 q~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p 538 (1530)
|++||+|||+.||++|.+|||+|+.|+|.||++|||||++||.|||+||||||++|++||++|++|+...+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC---------c--cCCCCCcchhH
Q 000421 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE---------S--SKSSKFSSIGS 607 (1530)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~---------~--~~~~~~~tv~~ 607 (1530)
+.+.+.|+|+||||+|+|+++||++||+|.++++++++|.+|++++|++||+..... + .+..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999653210 0 01124579999
Q ss_pred HHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccccc
Q 000421 608 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 687 (1530)
Q Consensus 608 ~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1530)
+|+.||+.||++|++|+||||||||||+.|.|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCchHHHHHHHHHHhCC--CCceeccceeecccchhhHHHHHH
Q 000421 688 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
.....+.+..+..++..+++ +.|++|+||||||++++..||.+|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 43332334445788888775 479999999999999999999875
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1e-179 Score=1691.83 Aligned_cols=663 Identities=41% Similarity=0.679 Sum_probs=621.9
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCC-cCCCCcchhhHHHHHH
Q 000421 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAA-FGELSPHVFAVGDAAY 140 (1530)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~-~~~l~PHifaiA~~Ay 140 (1530)
.++|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++.++.|++.. .+++|||||+||++||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998 99999999999887 7999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEE
Q 000421 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1530)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1530)
+.|.++++||||||||||||||||++|+||+|||.+++.. ..+..|+++|++|||||||||||||++|+||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 9999999999999999999999999999999999997532 234679999999999999999999999999999999999
Q ss_pred EEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000421 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1530)
Q Consensus 221 l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f 299 (1530)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999988889999999998877899999999
Q ss_pred HHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCC---cccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeE
Q 000421 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1530)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1530)
..|+.||+.|||+++++..||+|||||||||||+|.+..+ .+.+.+.+ .+.+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999986432 34444444 35799999999999999999999999
Q ss_pred EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC---CCeEEEEecccCCCCCCC-CChhHHHhh
Q 000421 377 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD---SKSIIGVLDIYGFESFKC-NSFEQFCIN 452 (1530)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~---~~~~IgiLDi~GFE~f~~-NsfeQlciN 452 (1530)
+.+++|.+++|++++||..+||+|||+||++||+|||.+||.+|.+... ...+||||||||||+|+. |||||||||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcIN 401 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCIN 401 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhH
Confidence 9999999999999999999999999999999999999999999986542 468999999999999999 999999999
Q ss_pred hhhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCC
Q 000421 453 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKN 532 (1530)
Q Consensus 453 yaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~ 532 (1530)
|||||||++|++|||+.||++|.+|||+|.+|+|.||++|||||++||.|||++|||||++|+|||++|++|+.+.+++|
T Consensus 402 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~ 481 (692)
T cd01385 402 YANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDN 481 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcc---------CCCCCc
Q 000421 533 NRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS---------KSSKFS 603 (1530)
Q Consensus 533 ~~f~~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~---------~~~~~~ 603 (1530)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..+.... ++.+.+
T Consensus 482 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~ 561 (692)
T cd01385 482 KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAP 561 (692)
T ss_pred CCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCC
Confidence 99999988888999999999999999999999999999999999999999999999975432211 122347
Q ss_pred chhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccc
Q 000421 604 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1530)
Q Consensus 604 tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1530)
||+++|+.||++||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||++.|||+|++|.+|++||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCchHHHHHHHHHHhCCC--CceeccceeecccchhhHHHHHHH
Q 000421 684 APEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1530)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~ 732 (1530)
+|... .+.++.|+.+|+.++++ +|++|+||||||+++++.||....
T Consensus 642 ~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 642 LPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred Ccccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 98643 23467899999998874 899999999999999999998644
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.9e-179 Score=1693.57 Aligned_cols=664 Identities=42% Similarity=0.723 Sum_probs=618.9
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000421 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~A 139 (1530)
.+.++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|++|+++.+..|+++..+++||||||||+.|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEE
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1530)
|++|...++||||||||||||||||++|+||+|||.+++++ ..|+++|+++||||||||||||++||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999986542 57999999999999999999999999999999999
Q ss_pred EEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCC------------
Q 000421 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN------------ 286 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~------------ 286 (1530)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred --------------ccccCCCCcHHHHHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCC-cccceecCcccH
Q 000421 287 --------------CYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE-IDSSVIKDEKSR 351 (1530)
Q Consensus 287 --------------~~~~~~~dd~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~ 351 (1530)
|...+++||+++|..|+.||+.|||+++++..||+|||||||||||+|.+... .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 23467899999999999999999999999999999999999999999986432 23344432 244
Q ss_pred HHHHHHHHHcCCCHHHHHHhhceeEEE-----eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 000421 352 FHLNMTAELLRCDAQSLEDALIKRVMV-----TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDS 426 (1530)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~~~l~~~~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~ 426 (1530)
..+..||.||||++++|.++|++|++. ++++.+.+|++++||..+||+|||+||++||+|||.+||.+|..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 679999999999999999999999998 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEEEecccCCCCCCCCChhHHHhhhhhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCccccccc
Q 000421 427 KSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIAL 506 (1530)
Q Consensus 427 ~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~l 506 (1530)
..+||||||||||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||++||.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCCCchHHHHHHHHHHhcCCCCCCCCCCC----------CCceEEEeecceeeecccChhhhcccchHHHHHHH
Q 000421 507 LDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQAL 576 (1530)
Q Consensus 507 Ldee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~~~----------~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~l 576 (1530)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988877542 35799999999999999999999999999999999
Q ss_pred HHhcchhhHhhcCCCCCCCc---cC--CCCCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhh
Q 000421 577 LTAAKCSFVAGLFPPLPEES---SK--SSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQL 651 (1530)
Q Consensus 577 l~~S~~~~i~~lf~~~~~~~---~~--~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QL 651 (1530)
|++|+++||+.||+...... .+ ..++.||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999997643211 11 22567999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHhhhcCCCcccchHHHHHHhcccccccccCCCchHHHHHHHHHHhCCC--CceeccceeecccchhhHHHH
Q 000421 652 RCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDA 729 (1530)
Q Consensus 652 r~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~ 729 (1530)
||+||||+|||+++|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999886543 358899999999998864 899999999999999999997
Q ss_pred H
Q 000421 730 R 730 (1530)
Q Consensus 730 ~ 730 (1530)
+
T Consensus 715 ~ 715 (717)
T cd01382 715 I 715 (717)
T ss_pred H
Confidence 5
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.9e-175 Score=1512.50 Aligned_cols=789 Identities=38% Similarity=0.650 Sum_probs=705.8
Q ss_pred ccCcEEEEeCCCCCeEeEEEEEEcCCEEEEEe--CCCcEEEEecccccCCCCCCCCCCcCccccCCCCChHHHHHHHHHh
Q 000421 8 IVGSHVWVEDPVLAWINGEVMWINGQEVHVNC--TNGKKVVTSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATR 85 (1530)
Q Consensus 8 ~~g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vL~~L~~R 85 (1530)
.-|..||++|+.++|+.|.|+++..+..+++. ..|.+++.-.+++++...+ ++.++||-|.|-||||+.+|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 35889999999999999999999988888865 3467787778888887543 56789999999999999999999999
Q ss_pred hccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000421 86 YELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTET 165 (1530)
Q Consensus 86 y~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~ 165 (1530)
|..|.||||+.+||||||||..++.+|+++.|..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEEecCCCcceeeeEeeeeccCcccc
Q 000421 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVC 245 (1530)
Q Consensus 166 ~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~tyLLEksRvv 245 (1530)
+|++++||+.--|+ +..|+++||++||||||||||||+|||||||||||++|||+.+|.++|+-|+.|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986554 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCc---------ccc-----------------CCCCcHHH
Q 000421 246 QISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNC---------YEL-----------------DGVSDAHE 298 (1530)
Q Consensus 246 ~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~---------~~~-----------------~~~dd~~~ 298 (1530)
.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-. ..+ +-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8899999999999999999985410 011 22689999
Q ss_pred HHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCC--cccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeE
Q 000421 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1530)
|..+..||..+|++++|...||+++|||||||||+|++..+ ..+|.+.+ .+...|..+|+|||+|+++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34566665 3556799999999999999999999998
Q ss_pred EEeC-----CceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHh
Q 000421 377 MVTP-----EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCI 451 (1530)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 451 (1530)
+.+. |..|.+||.+.+|..+||||||++|++||||||.+||.++-- ..+..|||||||.|||-|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPF-e~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPF-EKSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccc-ccccceeEEEeeccceeeecccHHHHHH
Confidence 8653 447899999999999999999999999999999999999954 3467899999999999999999999999
Q ss_pred hhhhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcC
Q 000421 452 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAK 531 (1530)
Q Consensus 452 NyaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 531 (1530)
||+|||||++||+.+++.||+.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+.+++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCC----------CCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccC--C
Q 000421 532 NNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSK--S 599 (1530)
Q Consensus 532 ~~~f~~p~~~----------~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~--~ 599 (1530)
|=+...||-+ ...|.|+||||.|.|.+..|+|||.|.+...+..|+..|+++||.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 8777777643 347999999999999999999999999999999999999999999999875443322 2
Q ss_pred C--CCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHH
Q 000421 600 S--KFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 677 (1530)
Q Consensus 600 ~--~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1530)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|+.||...++.||.|+|+...++++..|||+|-.|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccCCCchHHHHHHHHHHhCCC--CceeccceeecccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000421 678 NRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEF 755 (1530)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~ 755 (1530)
.-|+-.+|+.+. ..|++..|+.+...+|++ +|+||.||||||+|.++..+++....-...+..|+ .+..|+.|.++
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~-kVn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVA-KVNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHH-HHHHHHHHhHH
Confidence 999988887654 469999999999999985 89999999999999999998876555555555554 46789999988
Q ss_pred hhhccchhhhhhhhchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHhhHHHH
Q 000421 756 ILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMIL 813 (1530)
Q Consensus 756 ~~~r~a~i~IQa~~Rg~laR~~~~~lRr~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~I 813 (1530)
.+..-++..+=..- .+. +-|..+.+++|+.+|||++|+++......+.++
T Consensus 793 kk~q~~a~sVIKLk----NkI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLK----NKI----IYRAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHhhhhhhheeehh----hHH----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 77665443322110 111 224467889999999999999988765544443
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.4e-177 Score=1656.35 Aligned_cols=639 Identities=39% Similarity=0.698 Sum_probs=601.8
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000421 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~ 142 (1530)
++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEE
Q 000421 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1530)
|...++||||||||||||||||++|++|+||+.+++.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred ecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhH-hhcCCCCCCccccccCCCccccCCCC----cH
Q 000421 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDI-AKYKLGSPKSFHYLNQSNCYELDGVS----DA 296 (1530)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~-~~~~l~~~~~~~yl~~~~~~~~~~~d----d~ 296 (1530)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++.+|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999887777765 46
Q ss_pred HHHHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCC---cccceecCcccHHHHHHHHHHcCCCHHHHHHhhc
Q 000421 297 HEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALI 373 (1530)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 373 (1530)
++|..|+.||..|||+++++..||+|||||||||||+|.+... .+.+.+.+ ...+..||+||||++++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 23344433 35799999999999999999999
Q ss_pred eeEEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-----CCeEEEEecccCCCCCCCCChhH
Q 000421 374 KRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-----SKSIIGVLDIYGFESFKCNSFEQ 448 (1530)
Q Consensus 374 ~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 448 (1530)
++++.++++.+++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986543 35799999999999999999999
Q ss_pred HHhhhhhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHH
Q 000421 449 FCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT 528 (1530)
Q Consensus 449 lciNyaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 528 (1530)
||||||||||||+|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++.+
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHH
Q 000421 529 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 608 (1530)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~ 608 (1530)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 5678899888889999999999999999999999999999999999877 589999
Q ss_pred HHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccccc
Q 000421 609 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 688 (1530)
Q Consensus 609 f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1530)
||.||++||++|++|+||||||||||+.|.|+.||+..|++||||+||||+|||+++|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred cCCCchHHHHHHHHHHhCCCCceeccceeecccchhhHHHHHH
Q 000421 689 EGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 689 ~~~~~~~~~~~~ll~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999865
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=8.5e-176 Score=1664.33 Aligned_cols=668 Identities=53% Similarity=0.893 Sum_probs=631.0
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000421 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~A 139 (1530)
...+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++.+..|+++..+++|||||+||++|
T Consensus 4 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~A 82 (677)
T smart00242 4 KFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNA 82 (677)
T ss_pred ccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEE
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1530)
|+.|...++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++|+||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~ 161 (677)
T smart00242 83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI 161 (677)
T ss_pred HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence 999999999999999999999999999999999999986532 2467999999999999999999999999999999999
Q ss_pred EEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHH
Q 000421 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++
T Consensus 162 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~ 241 (677)
T smart00242 162 EIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEE 241 (677)
T ss_pred EEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccc-eecCcccHHHHHHHHHHcCCCHHHHHHhhceeEE
Q 000421 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSS-VIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 377 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1530)
|.+|+.||+.|||+++++.+||+|||||||||||+|....+.+.. .+. +...++.||.||||++++|.++|+++++
T Consensus 242 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 318 (677)
T smart00242 242 FKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKI 318 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEE
Confidence 999999999999999999999999999999999999865432221 232 3457999999999999999999999999
Q ss_pred EeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhH
Q 000421 378 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEK 457 (1530)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEk 457 (1530)
.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||
T Consensus 319 ~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEk 398 (677)
T smart00242 319 KTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEK 398 (677)
T ss_pred EeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHH
Confidence 99999999999999999999999999999999999999999999877788999999999999999999999999999999
Q ss_pred HHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCC
Q 000421 458 LQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK 537 (1530)
Q Consensus 458 Lq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~ 537 (1530)
||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||.+.+++|+.|.+
T Consensus 399 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~ 478 (677)
T smart00242 399 LQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSK 478 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHH
Q 000421 538 PK-LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSL 616 (1530)
Q Consensus 538 p~-~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L 616 (1530)
|+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+.+||+++|+.||+.|
T Consensus 479 ~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L 558 (677)
T smart00242 479 PRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKL 558 (677)
T ss_pred CCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHH
Confidence 84 45679999999999999999999999999999999999999999999999875443333446789999999999999
Q ss_pred HHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccccccc-CCCchH
Q 000421 617 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQ 695 (1530)
Q Consensus 617 m~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~ 695 (1530)
|++|++|+||||||||||+.+.|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++.... ...|++
T Consensus 559 ~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k 638 (677)
T smart00242 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAK 638 (677)
T ss_pred HHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986432 234689
Q ss_pred HHHHHHHHHhCC--CCceeccceeecccchhhHHHHHHH
Q 000421 696 VACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1530)
Q Consensus 696 ~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~ 732 (1530)
+.|+.||+.+++ ++|++|+||||||++++..||++|.
T Consensus 639 ~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 639 EACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 999999999875 5899999999999999999999873
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-176 Score=1524.66 Aligned_cols=694 Identities=41% Similarity=0.706 Sum_probs=647.9
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHH
Q 000421 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1530)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~A 139 (1530)
...|+|||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|+|++.-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEE
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~ 219 (1530)
|++|..+.+|||||||||||||||++||+||+|++.+++ .+.....|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 3444567889999999999999999999999999999999
Q ss_pred EEEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHH
Q 000421 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1530)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~ 298 (1530)
||+|+..|..+|++|.+|||||||||.|.++||||||||||++ |+.+.|..|++..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEE
Q 000421 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1530)
|++|+.||+++||.+++|+.||++||||||||||.|.+.. ..+.+.+. +.++-.|.|||||+..|++.||.|.+.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998732 23444443 368899999999999999999999887
Q ss_pred eC----CceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCeEEEEecccCCCCCCCCChhHHHhhh
Q 000421 379 TP----EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINF 453 (1530)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlciNy 453 (1530)
+. .+.+.+||+++||.+.||||||+||.+||||||++||.+|...+. ...+||||||||||+|+.||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 54 478999999999999999999999999999999999999975433 5789999999999999999999999999
Q ss_pred hhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CcccccccchhhcCCC----CCchHHHHHHHHHH
Q 000421 454 TNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFSQKLCQT 528 (1530)
Q Consensus 454 aNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p----~~~d~~~~~kl~~~ 528 (1530)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-++||||. .|.||+++|||.|-.. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4679999999999754 36799999999999
Q ss_pred hcCCCCCCCCCCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCccCCCCCcchhHH
Q 000421 529 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 608 (1530)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~ 608 (1530)
+++|++|..- ...|+|+||||+|+||++||.+||||.|..|++.|++.|.++|++.||+...+. .+..+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~-dskrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDA-DSKRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcc-cccCCCCCchhh
Confidence 9999999853 578999999999999999999999999999999999999999999999875443 334477899999
Q ss_pred HHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhcccccccc
Q 000421 609 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 688 (1530)
Q Consensus 609 f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1530)
.+.|.++|++||..|.||||||||||+.|.|+.||..+|++|+.|.|+-|.|||+|+||.+|..|+.|+.||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred c-CCCchHHHHHHHHHHhCC--CCceeccceeecccc-hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 000421 689 E-GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVI 764 (1530)
Q Consensus 689 ~-~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~ 764 (1530)
. +..|.+.+|+.||+...+ ++||+|.||||++.. .+-.||.+|+......|.+||+.||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 346899999999998765 589999999999975 467899999999999999999999999999998888765544
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=9.9e-174 Score=1651.26 Aligned_cols=662 Identities=51% Similarity=0.845 Sum_probs=620.9
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHH
Q 000421 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1530)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~ 142 (1530)
|+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||++||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEE
Q 000421 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1530)
|.++++||||||||||||||||++|++|+||+.++++. ...|+++|+++||||||||||||++|+||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 357999999999999999999999999999999999999
Q ss_pred ecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000421 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999988899999999999
Q ss_pred HHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCccc--ceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEe
Q 000421 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDS--SVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1530)
++.||+.|||+++++.+||+|||||||||||+|....+.+. +.+. +...++.+|.||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543322 3333 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCCCChhHHHhhhhhhHHH
Q 000421 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 459 (1530)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq 459 (1530)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887677889999999999999999999999999999999
Q ss_pred hhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCCCCC-C
Q 000421 460 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK-P 538 (1530)
Q Consensus 460 ~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~-p 538 (1530)
++|++++|+.||++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|+++|++|++||.+.++++++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988644 4
Q ss_pred CCCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC-----------ccCCCCCcchhH
Q 000421 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE-----------SSKSSKFSSIGS 607 (1530)
Q Consensus 539 ~~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1530)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456689999999999999999999999999999999999999999999999763211 112225689999
Q ss_pred HHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccccc
Q 000421 608 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 687 (1530)
Q Consensus 608 ~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1530)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCchHHHHHHHHHHhCC--CCceeccceeecccchhhHHHHHH
Q 000421 688 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
.......++.|+.++..+++ ++|++|+||||||++++..||.+|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 44333334449999998876 489999999999999999999764
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.8e-173 Score=1641.22 Aligned_cols=660 Identities=31% Similarity=0.491 Sum_probs=591.7
Q ss_pred cCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHH
Q 000421 64 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 143 (1530)
Q Consensus 64 ~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m 143 (1530)
+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| ||++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEEe
Q 000421 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQF 223 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~f 223 (1530)
..+++||||||||||||||||++|+||+|||.+++..+. ...+ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999764321 1234 57999999999999999999999999999999999
Q ss_pred cCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCC-ccccCCCCcHHHHHH
Q 000421 224 DKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN-CYELDGVSDAHEYLA 301 (1530)
Q Consensus 224 ~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~-~~~~~~~dd~~~f~~ 301 (1530)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...+++||+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765544333332 334678999999999
Q ss_pred HHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000421 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
|+.||+.|||+++++..||+|||||||||||+|.+.. +.+.+.+ .+.++.||.||||++++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999997622 2233433 3469999999999999999999998776553
Q ss_pred c-------------eEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecccCCCCCCC-----
Q 000421 382 E-------------VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKC----- 443 (1530)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1530)
+ .++.++++.+|.++||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678999999999999999999999999999999998766678999999999999984
Q ss_pred -CChhHHHhhhhhhHHHhhhhHhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCc--------------ccccccc
Q 000421 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKP--------------GGIIALL 507 (1530)
Q Consensus 444 -NsfeQlciNyaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~--------------~Gil~lL 507 (1530)
|||||||||||||||||+||++||+.||+||.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997655 79999999999865 4999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCCCCCCCC--C----CCCceEEEeecce--eeecccChhhhcccch-HHHHHHHHH
Q 000421 508 DEACMFPKSTHETFSQKLCQTFAKNNRFSKPK--L----SRTDFTILHYAGE--VTYQANHFLDKNKDYV-VAEHQALLT 578 (1530)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~--~----~~~~F~i~Hyag~--V~Y~~~~fl~kN~d~~-~~~~~~ll~ 578 (1530)
||||++|++||++|++||++.|++|++|.++. . ....|+|+||||. |+|+++||++||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999888887622 1 2468999999995 9999999999999976 689999999
Q ss_pred hcchhhHhhcCCCCCC-------------Ccc-----C-------------CCCCcchhHHHHHHHHHHHHHHcccCCeE
Q 000421 579 AAKCSFVAGLFPPLPE-------------ESS-----K-------------SSKFSSIGSRFKLQLQSLMETLNATAPHY 627 (1530)
Q Consensus 579 ~S~~~~i~~lf~~~~~-------------~~~-----~-------------~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~ 627 (1530)
+|++++|+.||+.... ..+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999954210 000 0 01345899999999999999999999999
Q ss_pred EeecCCCCCCC----------------------CCCCchhhHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccccc
Q 000421 628 IRCVKPNNVLK----------------------PSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAP 685 (1530)
Q Consensus 628 IrCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 685 (1530)
|||||||+.|. |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999987
Q ss_pred cccc------CCCchHHHHHHHHHHhCC--CCceeccceeecccchhhHHHHHH
Q 000421 686 EVLE------GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1530)
Q Consensus 686 ~~~~------~~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 731 (1530)
.... ...|++++|+.||+.+++ ++|++|+||||||+|+++.||..|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6421 235889999999999886 489999999999999999999865
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=6.5e-166 Score=1601.19 Aligned_cols=653 Identities=49% Similarity=0.855 Sum_probs=579.3
Q ss_pred cCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHH
Q 000421 64 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 143 (1530)
Q Consensus 64 ~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m 143 (1530)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| ||+++++..|+++..+++||||||||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC-CCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEEEE
Q 000421 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~-~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~l~ 222 (1530)
+++++||||||||||||||||++|+||+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred ecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000421 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1530)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~dd~~~f~~ 301 (1530)
|+.+|.++||+|.+||||||||+.+++||||||||||||+ ++++++++|+|.++.+|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCCCcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeEEEeCC
Q 000421 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1530)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1530)
++.||+.|||+++++.+||+|||||||||||+|....+.+.+.+.+.. .++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSE---ELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSH---HHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHH---HHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999987655556665543 59999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CCCeEEEEecccCCCCCCCCChhHHHhhhhhhHHHh
Q 000421 382 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQ 460 (1530)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNEkLq~ 460 (1530)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999998876 678999999999999999999999999999999999
Q ss_pred hhhHhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHh-cCCCCCCCC
Q 000421 461 HFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKP 538 (1530)
Q Consensus 461 ~f~~~vf~~eq~ey~~E~i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~f~~p 538 (1530)
+|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++++.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 888999888
Q ss_pred C----CCCCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCC--------------C-----
Q 000421 539 K----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE--------------E----- 595 (1530)
Q Consensus 539 ~----~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~--------------~----- 595 (1530)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||..... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976421 0
Q ss_pred --ccCCCCCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCCCcccch
Q 000421 596 --SSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1530)
Q Consensus 596 --~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~ 673 (1530)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++|||++||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccC----CCchHHHHHHHHHHhCC--CCceeccceeecc
Q 000421 674 YEFVNRFGILAPEVLEG----NYDDQVACQMILDKKGL--KGYQIGKTKVFLR 720 (1530)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~ll~~~~~--~~~~iGkTkVFlr 720 (1530)
.+|++||++|++..... ..++++.|+.+|+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999875432 46899999999999988 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=2e-114 Score=1098.72 Aligned_cols=752 Identities=37% Similarity=0.565 Sum_probs=663.0
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCcceEEecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHH
Q 000421 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1530)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay 140 (1530)
..+++||+.|..++|+.+++||..||..+.||||.|.+|++||||+.+|.+|.+..+..|.+.+.+++||||||+|+.||
T Consensus 60 ~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y 139 (1062)
T KOG4229|consen 60 VEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAY 139 (1062)
T ss_pred cccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhccccccCCCCCCccceEEE
Q 000421 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1530)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFGNAkT~~N~NSSRfgk~~~ 220 (1530)
++|++...||||+||||||||||++|+++++||+.++. .....++++|+.+||+|||||||+|.+|||||||||||+
T Consensus 140 ~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~ 216 (1062)
T KOG4229|consen 140 QDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIK 216 (1062)
T ss_pred HhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEE
Confidence 99999999999999999999999999999999999984 123578999999999999999999999999999999999
Q ss_pred EEecCCCcceeeeEeeeeccCccccccCCCCCcceeehhccc-CCHhhHhhcCCCCCCccccccCCCcccc-CCCCcHHH
Q 000421 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYEL-DGVSDAHE 298 (1530)
Q Consensus 221 l~f~~~g~i~ga~i~tyLLEksRvv~~~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~-~~~dd~~~ 298 (1530)
+.|..+|.|.||++.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+.+|.||+++.+..+ +|.+|..+
T Consensus 217 ~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~ 296 (1062)
T KOG4229|consen 217 VNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQ 296 (1062)
T ss_pred eccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHh
Confidence 999999999999999999999999999999999999999999 6778899999999999999999999999 99999999
Q ss_pred HHHHHhhhhHcccCHHHHHHHHHHHHHHHHhcCcccccCC--CcccceecCcccHHHHHHHHHHcCCCHHHHHHhhceeE
Q 000421 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK--EIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1530)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1530)
|..+..||..+||+.+++.+||+++|||||+|||+|.+-. ..|.+.+.+. .+++.+|.||+++.+.|.++++.++
T Consensus 297 ~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~---~~v~~vA~lL~~~~~~l~~alt~~~ 373 (1062)
T KOG4229|consen 297 FIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENE---EAVERVACLLLIKEKLLQEALTARV 373 (1062)
T ss_pred HHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccc---hHHHHHHHHhhcCHHHhhhhhcccc
Confidence 9999999999999999999999999999999999997532 2344445443 4799999999999999999999999
Q ss_pred EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC--CCeEEEEecccCCCCCCCCChhHHHhhhh
Q 000421 377 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD--SKSIIGVLDIYGFESFKCNSFEQFCINFT 454 (1530)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlciNya 454 (1530)
..++++.+..+++.++|.++|||+||.+|++||.|||.+||..+..+.. +...||||||||||+|+.|||||||||||
T Consensus 374 ~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~A 453 (1062)
T KOG4229|consen 374 NVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLA 453 (1062)
T ss_pred eeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987655 37899999999999999999999999999
Q ss_pred hhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhhcCCCCCchHHHHHHHHHHhcCCCC
Q 000421 455 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNR 534 (1530)
Q Consensus 455 NEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~ 534 (1530)
||+||++||+|||..||+||..|+|+|..|.|.||++|+|+|..||.||+.+|||||.+|+++|.+++.|+..+++.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCC-CCceEEEeecceeeecccChhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC------------------
Q 000421 535 FSKPKLS-RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE------------------ 595 (1530)
Q Consensus 535 f~~p~~~-~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~i~~lf~~~~~~------------------ 595 (1530)
+..|+.. .+.|+|.||||.|.|++.||+|||+|+++.++++++++|.+.++..++...+..
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 8777664 569999999999999999999999999999999999998888877665421000
Q ss_pred ----------------c-------------------------------c-------------------------------
Q 000421 596 ----------------S-------------------------------S------------------------------- 597 (1530)
Q Consensus 596 ----------------~-------------------------------~------------------------------- 597 (1530)
+ .
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 0 0
Q ss_pred CC------------------------CC--------------------------------------------------Cc
Q 000421 598 KS------------------------SK--------------------------------------------------FS 603 (1530)
Q Consensus 598 ~~------------------------~~--------------------------------------------------~~ 603 (1530)
++ .+ ..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 00 00 00
Q ss_pred chh----------------HHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhccchhHHHHhhhcCC
Q 000421 604 SIG----------------SRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGY 667 (1530)
Q Consensus 604 tv~----------------~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gy 667 (1530)
.++ .++......++..+....|.|++|++-|-.+....|+...|..|+++.|+++..++...+|
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~ 853 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLY 853 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccc
Confidence 011 1223445557788888899999999999888889999999999999999999999999999
Q ss_pred CcccchHHHHHHhcccccccccCCCchHHHHHHHHHHh--CCCCceeccceeecccchhhHHHHHH-HHHhhHHHHHHHH
Q 000421 668 PTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKK--GLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARKIQR 744 (1530)
Q Consensus 668 p~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~--~~~~~~iGkTkVFlr~~~~~~Le~~r-~~~l~~aa~~IQ~ 744 (1530)
+..+++.+|...+++..+.... .........+ ..++++.|++++|+.......++..- .+.....+...|+
T Consensus 854 ~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~ 927 (1062)
T KOG4229|consen 854 FAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQK 927 (1062)
T ss_pred cccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHH
Confidence 9999999999999988773211 1111122211 34689999999999887765544332 2222223778899
Q ss_pred HHHHHHHHHHHhhhccchhhhhhhhchhhHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHH
Q 000421 745 QTRTYIARKEFILLRNAAVILQSFLRGEMARKLYE-QLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVAR 823 (1530)
Q Consensus 745 ~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~~~~-~lRr~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aR 823 (1530)
+++....|+.+.++..+.+.+| |+++++|+... ......++.-+|..|+.+..+..+.-.+.+.+.+|..+++...+
T Consensus 928 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 1005 (1062)
T KOG4229|consen 928 WFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYT 1005 (1062)
T ss_pred HHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhh
Confidence 9999999999999999999999 88888877443 22334688889999999999999999999999999999887666
Q ss_pred HHH
Q 000421 824 NEF 826 (1530)
Q Consensus 824 r~~ 826 (1530)
..+
T Consensus 1006 ~~~ 1008 (1062)
T KOG4229|consen 1006 MIF 1008 (1062)
T ss_pred hhH
Confidence 554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.96 E-value=1e-28 Score=295.21 Aligned_cols=263 Identities=18% Similarity=0.364 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHhhhhcc-CCccccchhHHHHHHHHHHHHHhhhhcCCCCCCcccccCCcccccccccccccCCCCCCCc
Q 000421 1158 TSIFDRIIQTISGAIEVH-DNNDRLSYWLSNASTLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGI 1236 (1530)
Q Consensus 1158 ~~ll~~ii~~I~~~v~~~-~d~~~l~fWLSN~~~Ll~~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 (1530)
..||.++.+.++.++..+ ++-..|+|||+|.+++|||+++.-..+
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~ls---------------------------------- 640 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRDLS---------------------------------- 640 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccchh----------------------------------
Confidence 789999999999999988 555699999999999999999831100
Q ss_pred ccccccccccchhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccCCCcchhHhhh
Q 000421 1237 PFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLIKGRSQANAVAQQ 1316 (1530)
Q Consensus 1237 ~~~~~~l~~~~~e~~~v~~~~~~~~fkqqL~~l~~~iy~~l~~~~~~~L~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1316 (1530)
.+.+ +. +..|..+++.+|..|+.+++.+|++.+...+. .. .
T Consensus 641 ---~~~~-----~a------------q~vla~~vq~aFr~LV~clqsel~~~~~afLd---en----------------~ 681 (1629)
T KOG1892|consen 641 ---RITL-----DA------------QDVLAHLVQMAFRYLVHCLQSELNNYMPAFLD---EN----------------S 681 (1629)
T ss_pred ---heeh-----hH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hc----------------c
Confidence 0000 01 24588889999999999999999988765442 10 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc--CCCCccchhhHHHhchHHHHHHHhhc
Q 000421 1317 ALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEFVKAGLAELEQWCHDS 1394 (1530)
Q Consensus 1317 ~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~LE~W~~~~ 1394 (1530)
...+...++|..|+..|.+|+.|+|+..|+.|+|+|||+|||+++||+|+.. ..+|+--||--|++.|..||.||...
T Consensus 682 ~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErq 761 (1629)
T KOG1892|consen 682 LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQ 761 (1629)
T ss_pred ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 1123456899999999999999999999999999999999999999999998 67999999999999999999999999
Q ss_pred CCCcccchHHHhHHHHHHHHHHhhCCCCccCHHHHHhccCCCCCHHHHHHHHhcCcCCCCCCCCCCHHHHHHHHhhhhcc
Q 000421 1395 TEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMMDE 1474 (1530)
Q Consensus 1395 ~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~~~ 1474 (1530)
|.+.+.+ |||..|+||++||+++|....|+..+ ...|.+||+.|+.+||..|++++.|+ ++|.+++..+..+..+.
T Consensus 762 GlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ 837 (1629)
T KOG1892|consen 762 GLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENT 837 (1629)
T ss_pred cchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhh
Confidence 9777666 99999999999999998777777777 58999999999999999999999994 99999999876544322
Q ss_pred c---cCCCCCc--ccccCCCCCCccccc
Q 000421 1475 S---NNAVSSS--FLLDDDSSIPFTVDD 1497 (1530)
Q Consensus 1475 ~---~~~~~~~--lllD~~~~~Pf~~~~ 1497 (1530)
. .-.+... |--+++.-+||.+|+
T Consensus 838 ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 838 ADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred hhHhhhccCceeecccCcccccceeecC
Confidence 1 1123333 444777788999987
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=2.3e-27 Score=234.28 Aligned_cols=105 Identities=36% Similarity=0.653 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhHHHHHHhhccCCCCccchhhHHHhchHHHHHHHhhcCCCcccchHHHhHHHHHHHHHHhhCCCCccCHH
Q 000421 1348 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLK 1427 (1530)
Q Consensus 1348 Q~f~Qlf~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1427 (1530)
|+|+|+|+|||+.+||.||.|+++|+|++|+|||+||+.||+||+++|.+.. ++++|.|++||++|||++|++..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999994333 68999999999999999765666666
Q ss_pred HHHhccCCCCCHHHHHHHHhcCcCCCCC
Q 000421 1428 EITNDLCPVLSIQQLYRISTMYWDDKYG 1455 (1530)
Q Consensus 1428 ~i~~~~C~~Ls~~Ql~kiL~~Y~~d~~e 1455 (1530)
.+ .++||+|||.||++||++|+||++|
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 66 5999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.50 E-value=7.9e-11 Score=160.13 Aligned_cols=464 Identities=13% Similarity=0.106 Sum_probs=230.6
Q ss_pred HHHHHHHHcCCCHHHHHHhhcee--EEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEE
Q 000421 353 HLNMTAELLRCDAQSLEDALIKR--VMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSII 430 (1530)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~l~~~--~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~I 430 (1530)
.+..+-..||+++++....+--- .+..|+-.+...-..++|.-.....|-.+- .|+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~-~llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKAC-HLLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHH-HHcCCCHHHHHHHhccc--ceecc
Confidence 35667789999988766544211 111222222211134444444333333331 12222222222333221 12245
Q ss_pred EEecccCCCCCCCCChhHHHhhhhhhHHHhhhhHhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCcccccccchhh
Q 000421 431 GVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEA 510 (1530)
Q Consensus 431 giLDi~GFE~f~~NsfeQlciNyaNEkLq~~f~~~vf~~eq~ey~~E~i~~~~i~~~dn~~~ldlie~~~~Gil~lLdee 510 (1530)
+-.++.|+.. +| .++|=+-|...-...+|. ..-.+...+++|+ .+-..+|.+++- |++.+.-+
T Consensus 401 ~e~v~k~q~~------~q--~~~~v~alAk~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDi-aGFEIfe~--- 463 (1930)
T KOG0161|consen 401 REWVSKAQNV------EQ--VLFAVEALAKALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDI-AGFEIFEF--- 463 (1930)
T ss_pred chhhhhcchH------HH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeee-ccccccCc---
Confidence 5566677653 33 677777777766666664 5667778888887 344555555553 22222211
Q ss_pred cCCCCCchH----HHH-HHHHHHhcCCCCCCCCC----CCCCceEEEeecceeeecccChhhhcccchHHHHHHHH----
Q 000421 511 CMFPKSTHE----TFS-QKLCQTFAKNNRFSKPK----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALL---- 577 (1530)
Q Consensus 511 ~~~p~~~d~----~~~-~kl~~~~~~~~~f~~p~----~~~~~F~i~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll---- 577 (1530)
.+=+ +|. +||.+-| +|.-|..-- --+-.+..-||+-+ -=.+.+-++|= ..++.+|
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp-----~Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKP-----MGILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccccc-hhhhHHHHhch-----hhHHHHHHHHH
Confidence 1111 111 3443333 344444210 01235666677211 11222223331 1233332
Q ss_pred ---HhcchhhHhhcCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchhhHHHhhhcc
Q 000421 578 ---TAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCG 654 (1530)
Q Consensus 578 ---~~S~~~~i~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~~v~~QLr~~ 654 (1530)
.+|...|+..|+.... ++..+|.... +.+...-+...+-+.+ |+|.-+|-..++..-.+..|+.+|+|+
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 2444455555543211 1222222221 3334445555555555 999999998888888889999999999
Q ss_pred chhHHHHhhhcCCCcccchHHHHHHhcccccccccCC-----CchHHHHHHHHHHhCCCCceeccceeec---ccchh--
Q 000421 655 GVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGN-----YDDQVACQMILDKKGLKGYQIGKTKVFL---RAGQM-- 724 (1530)
Q Consensus 655 gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~iGkTkVFl---r~~~~-- 724 (1530)
+ .+.|...-.| +..+..+..++.. ......+. .-.+.....++..+....-.|=+--|+. ++|++
T Consensus 604 ~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~ 678 (1930)
T KOG0161|consen 604 T-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDA 678 (1930)
T ss_pred c-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCH
Confidence 9 8887776655 6667777766654 21111111 1123333444444432222221112221 22322
Q ss_pred -hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhh--hchhhH-----HHHHHHHHH-------HHHHHH
Q 000421 725 -AELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSF--LRGEMA-----RKLYEQLRR-------EAAALK 789 (1530)
Q Consensus 725 -~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~--~Rg~la-----R~~~~~lRr-------~~AAi~ 789 (1530)
..|..+| ++..--.|--+.+||..|..|...+...-.+... -.|+.. ++.+..+.. ...-+.
T Consensus 679 ~lvl~QLr---cngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvF 755 (1930)
T KOG0161|consen 679 PLVLNQLR---CNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVF 755 (1930)
T ss_pred HHHHHHhh---ccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeee
Confidence 1223322 3333334444567888877765554322222111 122222 222222210 111122
Q ss_pred HhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 790 IQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRT-KAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCR 868 (1530)
Q Consensus 790 IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~-~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~~~R~~ 868 (1530)
..+-+-+++.-.+-..+...++.+|+.+||+++|+.+..+.+. .|..+||+++|.|...+.| .|||-+
T Consensus 756 fkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w-----------~W~~Lf 824 (1930)
T KOG0161|consen 756 FKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW-----------PWWRLF 824 (1930)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----------HHHHHH
Confidence 3333444555555556677788999999999999999777654 5777999999999888877 455555
Q ss_pred HHHHHHH
Q 000421 869 VARRELR 875 (1530)
Q Consensus 869 ~arkel~ 875 (1530)
..-+.+.
T Consensus 825 ~kvkPLL 831 (1930)
T KOG0161|consen 825 TKVKPLL 831 (1930)
T ss_pred HHHHHHH
Confidence 5544443
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.63 E-value=4.7e-08 Score=107.32 Aligned_cols=90 Identities=27% Similarity=0.314 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhchHHHhhc-cccccCCC
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNN 210 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snpilEaFG-NAkT~~N~ 210 (1530)
||+.+..++..|+ ++.|+||+..|+||||||.|..--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8888889999988 5799999999999999998743211 00010011222 3778888999999 99999999
Q ss_pred CCCccceEEEEEecCCCcce
Q 000421 211 NSSRFGKFVEIQFDKNGRIS 230 (1530)
Q Consensus 211 NSSRfgk~~~l~f~~~g~i~ 230 (1530)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654433
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.48 E-value=7.4e-05 Score=98.75 Aligned_cols=85 Identities=19% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000421 785 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQ-C 863 (1530)
Q Consensus 785 ~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ-~ 863 (1530)
..++.||+.|||+..|++|......+..+|...+|+..|+....-....+++.+|..|+....|..|+.....+..+| .
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~ 825 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666555544455566666666666666666666666666666 3
Q ss_pred HHHHHH
Q 000421 864 GWRCRV 869 (1530)
Q Consensus 864 ~~R~~~ 869 (1530)
.+|.+.
T Consensus 826 i~~~~~ 831 (1463)
T COG5022 826 IKREKK 831 (1463)
T ss_pred HHHHHH
Confidence 333333
No 28
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.37 E-value=2.1e-06 Score=110.07 Aligned_cols=86 Identities=35% Similarity=0.451 Sum_probs=80.6
Q ss_pred HHHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 784 EAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQC 863 (1530)
Q Consensus 784 ~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~ 863 (1530)
..+++.||+.+|+|..|+.|..+|.+++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999 233 778999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000421 864 GWRCRVARR 872 (1530)
Q Consensus 864 ~~R~~~ark 872 (1530)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.36 E-value=1e-06 Score=112.62 Aligned_cols=128 Identities=26% Similarity=0.331 Sum_probs=82.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHhhHHHH
Q 000421 734 VLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMIL 813 (1530)
Q Consensus 734 ~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~~~~~lRr~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~I 813 (1530)
....+|..||+++|+|..|+.|+.+++-++.||+.+||+..|+.|..+- ++.. +| ++-|. ++.++
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~--wSv~-~l--------ek~~l----rwR~k 872 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKIT--WSVG-VL--------EKLIL----RWRRK 872 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheec--hhhh-HH--------HHHHH----HHHHh
Confidence 3457899999999999999999999999999999999999999987653 1111 11 11111 22334
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 814 QTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAY--SYYKKLQRAIIVSQCGWRCRVARRELRKLK 878 (1530)
Q Consensus 814 Qs~~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r--~~~~~l~~a~i~iQ~~~R~~~arkel~~lk 878 (1530)
|..+||+..|+..... +.||+.||..+|-|+.- ..|.++.++++.||+.+|-+.++.+++++.
T Consensus 873 ~~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 873 GKGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555555544433222 23555666666655554 445566666666666666666665555443
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.26 E-value=2.6e-06 Score=69.22 Aligned_cols=41 Identities=32% Similarity=0.611 Sum_probs=37.8
Q ss_pred CcEEEEeCCCCCeEeEEEEEEcCCEEEEEeCCCcEEEEecc
Q 000421 10 GSHVWVEDPVLAWINGEVMWINGQEVHVNCTNGKKVVTSVS 50 (1530)
Q Consensus 10 g~~vw~~~~~~~w~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 50 (1530)
+.+|||||++++|+.|+|++.+|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999988764
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.03 E-value=8.2e-06 Score=104.61 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hh-----------ccchhhhhhhhchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q 000421 737 NAARKIQRQTRTYIARKEFI-LL-----------RNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYL 804 (1530)
Q Consensus 737 ~aa~~IQ~~~R~~~~Rk~~~-~~-----------r~a~i~IQa~~Rg~laR~~~~~lRr~~AAi~IQ~~~Rg~~~Rr~y~ 804 (1530)
.+|..||..+|.-.-++.-. .+ ....+.++..++++..| +...||..||..+|+|+.|+.|.
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r------~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDR------SDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccc------cchhHHHHhhhhhhhHHhhhhhc
Confidence 66777888887665443221 11 12233444444432222 23478999999999999999999
Q ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 805 TVRSSAMILQTGLRAMVARNEFRLRK--------RTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVAR 871 (1530)
Q Consensus 805 ~~r~a~i~IQs~~Rg~~aRr~~~~~r--------~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~~~R~~~ar 871 (1530)
.++.-+++||+.+||+..|+.|+..- -..++..+|+-+|+|+.+........++..+|..+|.+..-
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 99999999999999999999986432 13567789999999999999888888899999999887654
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.67 E-value=0.041 Score=69.69 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000421 1318 LIAHWQSIVKSLNNYLKIMRANYVPSFLI 1346 (1530)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~ 1346 (1530)
|..++...+..+++++..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45577888888888888888877766544
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.48 E-value=0.48 Score=60.58 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000421 1008 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 1053 (1530)
Q Consensus 1008 ~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~l 1053 (1530)
....++.+++..+.+.+-....++.+.++.+.+|++.++.++.+..
T Consensus 504 g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 504 GARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344555556666666666667777777777777777777766543
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.032 Score=69.46 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=12.7
Q ss_pred cCCCCccchhhHHHhchHHHHHHH
Q 000421 1368 RRECCSFSNGEFVKAGLAELEQWC 1391 (1530)
Q Consensus 1368 r~~~cs~s~G~qIr~nls~LE~W~ 1391 (1530)
.++-.-|=-|.=+.-+=-+.--|+
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 355566666665555444444444
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.031 Score=69.77 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD 1019 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~ 1019 (1530)
.++.+.....+|.....+++.+..+++....+++....+++.+..+
T Consensus 171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333333
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.31 E-value=1.9 Score=61.21 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=3.8
Q ss_pred ecccCCCCC
Q 000421 433 LDIYGFESF 441 (1530)
Q Consensus 433 LDi~GFE~f 441 (1530)
|.|.||-+|
T Consensus 5 l~l~nf~s~ 13 (1164)
T TIGR02169 5 IELENFKSF 13 (1164)
T ss_pred EEEeCeeeE
Confidence 344444433
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.58 Score=61.91 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=5.7
Q ss_pred cchhhHHHH
Q 000421 721 AGQMAELDA 729 (1530)
Q Consensus 721 ~~~~~~Le~ 729 (1530)
.|++.|||.
T Consensus 250 ~GmLEYLED 258 (1293)
T KOG0996|consen 250 EGMLEYLED 258 (1293)
T ss_pred chHHHHHHH
Confidence 466666665
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.24 E-value=0.77 Score=60.83 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 976 ~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
..+..+..+.+..+..|..+++.++..+..++.+.+++..++...+.+....+.++..+..+++....+++.|+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555555555555555555555555555555555555556666665655555543
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.23 E-value=0.36 Score=68.28 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=2.4
Q ss_pred chhHHH
Q 000421 1182 SYWLSN 1187 (1530)
Q Consensus 1182 ~fWLSN 1187 (1530)
.|||++
T Consensus 617 ~~~lg~ 622 (1164)
T TIGR02169 617 KYVFGD 622 (1164)
T ss_pred HHHCCC
Confidence 334444
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.079 Score=69.08 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 881 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQE 922 (1530)
Q Consensus 881 a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E 922 (1530)
..++..++.....|+.++..|....+.++.....+|.++.+|
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665555555555444433
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.14 E-value=0.48 Score=62.68 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1013 l~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
+..++.+.+.++..|+.+++.+++.+..|.++.+.++
T Consensus 392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.13 E-value=2.7 Score=59.24 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=7.9
Q ss_pred HHHhchHHHHHHHhhcC
Q 000421 1379 FVKAGLAELEQWCHDST 1395 (1530)
Q Consensus 1379 qIr~nls~LE~W~~~~~ 1395 (1530)
.++-.+..|+.=+..-|
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44444555554444433
No 43
>PRK11637 AmiB activator; Provisional
Probab=97.11 E-value=0.13 Score=64.21 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~lee 1036 (1530)
+|......++.+..+++....+++.+..+++....+....+..++.+....+.++..++.
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~ 240 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA 240 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444333333333333333333333333333333333333
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.54 Score=61.19 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=23.1
Q ss_pred cCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000421 125 FGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 125 ~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~ 178 (1530)
..+.+||-=| |+|=.|||||- |+.-++++=|
T Consensus 20 I~~fDp~FNA-------------------ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 20 ISGFDPQFNA-------------------ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred ccCCCcccch-------------------hhcCCCCCchH----HHHHHHHHHc
Confidence 4677888766 89999999995 5565666544
No 45
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.00 E-value=0.018 Score=76.75 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhh-----hccchhhhhhhhchhhHHHHHHHH----H-HHHHHHHHhhHHHHHHH----HHhhHHHH
Q 000421 742 IQRQTRTYIARKEFIL-----LRNAAVILQSFLRGEMARKLYEQL----R-REAAALKIQTNFRAYVA----QRSYLTVR 807 (1530)
Q Consensus 742 IQ~~~R~~~~Rk~~~~-----~r~a~i~IQa~~Rg~laR~~~~~l----R-r~~AAi~IQ~~~Rg~~~----Rr~y~~~r 807 (1530)
.|..+||...|...-. -..-..++|+..||+..|-.++.. + ..-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 5566666655553211 112233347777777666655432 1 23345567777777663 11222334
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000421 808 SSAMILQTGLRAMVARNEFRLRKR-----TKAAIIAQAQWRCHQAYSYYKKL 854 (1530)
Q Consensus 808 ~a~i~IQs~~Rg~~aRr~~~~~r~-----~~aA~~IQ~~~R~~~~r~~~~~l 854 (1530)
..++.+|+..||.++|+.+..+.+ ..+.+.||++.|.+..|..|+.+
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 456667777777777766644432 23455566666666666655554
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.97 E-value=1.1 Score=63.45 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1012 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1012 el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
+++..+...+.++.+++.++.+++.++..++.+.+.+++
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555444
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.90 E-value=0.13 Score=54.00 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccc
Q 000421 887 LQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETP 966 (1530)
Q Consensus 887 l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~ 966 (1530)
+......++.++.++..+.. .+..++..|+..+..++.+++.++..+...+..+.....
T Consensus 12 a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~---------- 70 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK---------- 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------
Confidence 33444455555555555544 233566666666666776666666665433332221100
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 967 VIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 1037 (1530)
Q Consensus 967 ~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leek 1037 (1530)
....+..|...+..|+++++.....+.+...++.+.....+.++.++..++.+.......++.++.+
T Consensus 71 ----~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 71 ----RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred ----HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1112234555555555555555555555555555444444444444444444444444444444433
No 48
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=2 Score=54.40 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=6.2
Q ss_pred HHHHHhcCcC
Q 000421 1442 LYRISTMYWD 1451 (1530)
Q Consensus 1442 l~kiL~~Y~~ 1451 (1530)
+.+++.+|.+
T Consensus 1053 v~qviamYdY 1062 (1118)
T KOG1029|consen 1053 VCQVIAMYDY 1062 (1118)
T ss_pred cceeEEeecc
Confidence 4556667765
No 49
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.84 E-value=0.017 Score=76.89 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHhhhc-------cchhhhhhhhchhhHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhhHHHH--
Q 000421 740 RKIQRQTRTYIARKEFILLR-------NAAVILQSFLRGEMARKLYEQLRREAA---ALKIQTNFRAYVAQRSYLTVR-- 807 (1530)
Q Consensus 740 ~~IQ~~~R~~~~Rk~~~~~r-------~a~i~IQa~~Rg~laR~~~~~lRr~~A---Ai~IQ~~~Rg~~~Rr~y~~~r-- 807 (1530)
..-+..+++++.|....-.. ..-+..|+.+||...|.....+--..+ -.++|+..||+..|..+....
T Consensus 481 ~k~~~~~~~~l~~~~~~~~~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~f 560 (1401)
T KOG2128|consen 481 MKWLAYIYGNLVREAKKWLLEELHFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDF 560 (1401)
T ss_pred hhhHHHhhhhhhhhhhccccHHHHHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhH
Confidence 45566777777766543322 334557888888887776544432111 244599999998888765432
Q ss_pred -----hhHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 000421 808 -----SSAMILQTGLRAMVA--RNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKL-------QRAIIVSQCGWRCRVARRE 873 (1530)
Q Consensus 808 -----~a~i~IQs~~Rg~~a--Rr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~l-------~~a~i~iQ~~~R~~~arke 873 (1530)
-.+..||+.|||++. -+.....-...-++.+|++.||++.|+.|.+. ..+++.+|++.|....|+.
T Consensus 561 l~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 561 LKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred HHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 246789999999984 22222223346778899999999999887655 3688899999999999999
Q ss_pred HHHHHH
Q 000421 874 LRKLKM 879 (1530)
Q Consensus 874 l~~lk~ 879 (1530)
++.+..
T Consensus 641 y~~L~~ 646 (1401)
T KOG2128|consen 641 YKLLFT 646 (1401)
T ss_pred HHHHhc
Confidence 987764
No 50
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.82 E-value=1.2 Score=62.94 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.6
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000421 151 SILVSGESGAGKTETTKML 169 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i 169 (1530)
..+|.|++|||||.....|
T Consensus 25 ~~~i~G~NGsGKS~ll~ai 43 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAI 43 (1179)
T ss_pred cEEEECCCCCChhHHHHHH
Confidence 6789999999999866443
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.81 E-value=0.42 Score=62.57 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 994 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1043 (1530)
Q Consensus 994 ~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~ 1043 (1530)
++..-||..+...-+-+.+|-..+.++..+++.++..+..-+.+|.+|+.
T Consensus 601 dk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 601 DKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444555555555444444444444444443
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.31 Score=63.27 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=7.3
Q ss_pred HHHHHHHHhhh
Q 000421 408 LFDWIVEKINI 418 (1530)
Q Consensus 408 lF~wiV~~iN~ 418 (1530)
-++|.+..||.
T Consensus 316 ~l~~~~~tl~~ 326 (1174)
T KOG0933|consen 316 SLNLKKETLNG 326 (1174)
T ss_pred HHHHHHHHHhh
Confidence 46777777764
No 53
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.78 E-value=0.00055 Score=90.70 Aligned_cols=269 Identities=17% Similarity=0.096 Sum_probs=169.3
Q ss_pred hhHHHHHHHHHHHHHHcccCCeEEeecCCCCCCCCCCCchh-hHHHhhhccchhHHHHhhhcCCCcccchHHHHHHhccc
Q 000421 605 IGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENF-NVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1530)
Q Consensus 605 v~~~f~~sl~~Lm~~l~~t~~h~IrCIkPN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1530)
++..++-++.+....|.+..+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 45556668888888888999999999999999999999987 89999999999999999999999999999998877744
Q ss_pred ccccccCCCchHHHHHHHHHHhCCCCceeccceeecccchhhHHHHHHHHHh--------------------------hH
Q 000421 684 APEVLEGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL--------------------------GN 737 (1530)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l--------------------------~~ 737 (1530)
.-.......-.+.+|..+++.-+.+.+..+.+.++.+.-.-..+.-.+.+.. ..
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 3211111111245666777777777777777777765432111111111111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----ccchhhhhhhhchhhHHHHH-----------------------------------
Q 000421 738 AARKIQRQTRTYIARKEFILL----RNAAVILQSFLRGEMARKLY----------------------------------- 778 (1530)
Q Consensus 738 aa~~IQ~~~R~~~~Rk~~~~~----r~a~i~IQa~~Rg~laR~~~----------------------------------- 778 (1530)
.+..||+-++....+..+... -...+.+|.-|=|...+...
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 344555555544444332211 11233333333221111110
Q ss_pred --------------------------H-HHHHHHH---HHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHHHHH-
Q 000421 779 --------------------------E-QLRREAA---ALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFR- 827 (1530)
Q Consensus 779 --------------------------~-~lRr~~A---Ai~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~- 827 (1530)
. .+.++.. +...|++++....++.+.++..+.+.+| +++...|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 0 0111111 3445777777777777777777777777 66666665433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 828 LRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELR 875 (1530)
Q Consensus 828 ~~r~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~~~R~~~arkel~ 875 (1530)
......+|.-+|..|+.+..+..+...++..+.+|..++...-++...
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1009 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIFA 1009 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhHH
Confidence 223345677788888888888888888888888888877766555543
No 54
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.76 E-value=0.021 Score=70.62 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 782 RREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKK 853 (1530)
Q Consensus 782 Rr~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~ 853 (1530)
|...-++.||+.||||++|.+|++++.+.+.|+ ++|.+..+ ..+..||+.+|++..++.|.+
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 344678889999999999999999999988888 77744332 345568889999988887743
No 55
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.70 E-value=0.0018 Score=44.49 Aligned_cols=20 Identities=40% Similarity=0.707 Sum_probs=15.3
Q ss_pred HHHHHHhhHHHHHHHHHhhH
Q 000421 785 AAALKIQTNFRAYVAQRSYL 804 (1530)
Q Consensus 785 ~AAi~IQ~~~Rg~~~Rr~y~ 804 (1530)
.||+.||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57788888888888887763
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.65 E-value=0.32 Score=58.37 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRL----AEKVSNLESENQV 1047 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~l----eeki~~Le~E~~~ 1047 (1530)
..++..++.++..++.+++..++++.+++.++..++...+++..+..+++.++.+++...+.- ..++..|+.+.+.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555444444444444433333334433333333322211 1245556666555
Q ss_pred HHH
Q 000421 1048 LRQ 1050 (1530)
Q Consensus 1048 L~q 1050 (1530)
|+.
T Consensus 288 Le~ 290 (325)
T PF08317_consen 288 LEK 290 (325)
T ss_pred HHH
Confidence 554
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.63 E-value=2.4 Score=59.75 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 983 ENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 983 ~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
..+..++..++.+++.++..+..+....+++..++.+++.+...++.+++.++.++..|+.....++..
T Consensus 393 ~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (1163)
T COG1196 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444555555555555555555556666666666666666665553
No 58
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.56 E-value=0.38 Score=52.98 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAK-------NGELTKKLKDAEKRVDELQDSVQR---LAEKVSNLESENQ 1046 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~-------~~el~~el~~le~~i~~Lq~el~~---leeki~~Le~E~~ 1046 (1530)
.|+.++..++...+.+.+-+.++++....++.. .+++++++..+-.++.-|+.++.+ +-+.++.|+.|-.
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEar 174 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEAR 174 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333 345555555555555555544432 2234555555555
Q ss_pred HHHHH
Q 000421 1047 VLRQQ 1051 (1530)
Q Consensus 1047 ~L~qq 1051 (1530)
.|+|.
T Consensus 175 dlrqe 179 (333)
T KOG1853|consen 175 DLRQE 179 (333)
T ss_pred HHHHH
Confidence 55553
No 59
>PRK09039 hypothetical protein; Validated
Probab=96.53 E-value=0.29 Score=58.98 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~L 1041 (1530)
+.+...+..+....+....+...++..+..++..++.....++..+..+|.+..+.+.++++++.++...
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555556666666665555555555566665555555555555555544
No 60
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.51 E-value=0.0031 Score=43.29 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000421 737 NAARKIQRQTRTYIARKEFI 756 (1530)
Q Consensus 737 ~aa~~IQ~~~R~~~~Rk~~~ 756 (1530)
++|+.||+.||||++|++|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57788888888888888763
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.44 E-value=8.4 Score=54.61 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHhcCcCCCCCCCCCCHH-HHHHHHhhhh
Q 000421 1445 ISTMYWDDKYGTHSVSSE-VISSMRVMMM 1472 (1530)
Q Consensus 1445 iL~~Y~~d~~e~~~v~~~-~i~~v~~~~~ 1472 (1530)
....|+..+.. ..||++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455433332 357877 8888766554
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.38 E-value=9 Score=54.30 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1011 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1011 ~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
..+..+...++...+....++...+.++.+++.+.+.|..
T Consensus 493 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 493 EELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444455555555555555544444
No 63
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=1.5 Score=54.35 Aligned_cols=23 Identities=13% Similarity=-0.140 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000421 848 YSYYKKLQRAIIVSQCGWRCRVA 870 (1530)
Q Consensus 848 r~~~~~l~~a~i~iQ~~~R~~~a 870 (1530)
|..|..++..+...|+.+-....
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 34444444445555554444433
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.27 E-value=4.1 Score=51.26 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1023 RVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1023 ~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
++.+|+.++..+++.+++=..|.++|+.+
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL~~q 400 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKLEKQ 400 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=96.27 E-value=1.2 Score=61.00 Aligned_cols=11 Identities=18% Similarity=0.592 Sum_probs=6.7
Q ss_pred eeecccchhhH
Q 000421 716 KVFLRAGQMAE 726 (1530)
Q Consensus 716 kVFlr~~~~~~ 726 (1530)
-||++.|.+..
T Consensus 132 ~~~i~Qge~~~ 142 (880)
T PRK02224 132 CAYVRQGEVNK 142 (880)
T ss_pred eeEeeccChHH
Confidence 36777776543
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.23 E-value=1.6 Score=52.90 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1530)
Q Consensus 1013 l~~el~~le~~i~~Lq~el~~leeki~~Le~E~ 1045 (1530)
+..++...++++.+|...-..|+..|..++.+.
T Consensus 215 l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 215 LNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 67
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.22 E-value=0.71 Score=57.78 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000421 888 QEAKNKLEKRVEELTWRLQ 906 (1530)
Q Consensus 888 ~~~~~~lE~kl~eL~~~l~ 906 (1530)
++....++.++.+++..+.
T Consensus 163 e~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 68
>PRK02224 chromosome segregation protein; Provisional
Probab=96.22 E-value=5.6 Score=54.69 Aligned_cols=8 Identities=0% Similarity=0.086 Sum_probs=3.8
Q ss_pred hHHHHHHH
Q 000421 518 HETFSQKL 525 (1530)
Q Consensus 518 d~~~~~kl 525 (1530)
-.|++.-+
T Consensus 36 KStil~ai 43 (880)
T PRK02224 36 KSSLLEAC 43 (880)
T ss_pred HHHHHHHH
Confidence 34455544
No 69
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.18 E-value=3.1 Score=52.59 Aligned_cols=23 Identities=17% Similarity=-0.068 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000421 833 KAAIIAQAQWRCHQAYSYYKKLQ 855 (1530)
Q Consensus 833 ~aA~~IQ~~~R~~~~r~~~~~l~ 855 (1530)
.+.+++|++.|||++|+++++..
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhchHH
Confidence 45667888888888888876653
No 70
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.17 E-value=6.6 Score=51.66 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhCC
Q 000421 883 ETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLV---IKEREAARKAIKEAP 959 (1530)
Q Consensus 883 e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l---~~e~~~~~~~~~e~~ 959 (1530)
+-.++......++.++..|++++++.-....++ +.|...++.++..+..+..++.... ...+.++....+.++
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~l----r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae 246 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRL----RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAE 246 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Confidence 444566666677777777776666333222222 2333334444444433333332211 111222222222221
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 960 PVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRLAEK 1037 (1530)
Q Consensus 960 ~~~~e~~~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~--~el~~el~~le~~i~~Lq~el~~leek 1037 (1530)
..- +.-.+..-...-+....+.|++.-..|.++.+.++++++.++.+. ..++.++-.+.+++..++.+....+.+
T Consensus 247 r~d---~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~k 323 (1195)
T KOG4643|consen 247 RPD---TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHK 323 (1195)
T ss_pred cCC---CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 110 000011112222444444455554455555555666666555555 345555555555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 000421 1038 VSNLESENQVLRQ 1050 (1530)
Q Consensus 1038 i~~Le~E~~~L~q 1050 (1530)
+.+|..||..|+-
T Consensus 324 teeL~eEnstLq~ 336 (1195)
T KOG4643|consen 324 TEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666555543
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.17 E-value=0.8 Score=59.44 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQ 990 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~ 990 (1530)
.+..++.+.+.++..+.
T Consensus 307 ~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 307 KLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 72
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.17 E-value=0.0041 Score=74.05 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=44.2
Q ss_pred EecCCcCCCCCCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000421 101 AVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 166 (1530)
Q Consensus 101 avNP~~~l~~ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 166 (1530)
++|||...| |+......++. +.+||-|-+ -+.-|..-..||+||++||.|||||+-.
T Consensus 23 ~~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 23 AINPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 399999998 88766655543 456776644 3667777789999999999999999754
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.15 E-value=1.4 Score=49.84 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAK 1009 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~ 1009 (1530)
+...|..+...++++...++.++.++...+.++++.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333
No 74
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.11 E-value=0.57 Score=53.65 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTAD 997 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ 997 (1530)
.+...++..+..|+.++......+.
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333333
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=96.06 E-value=0.93 Score=62.25 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.9
Q ss_pred EEecCCCCCCchhhHHHH
Q 000421 152 ILVSGESGAGKTETTKML 169 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i 169 (1530)
.+|+|++|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 469999999999877644
No 76
>PRK09039 hypothetical protein; Validated
Probab=96.03 E-value=0.56 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000421 889 EAKNKLEKRVEELTWRLQIEKRL 911 (1530)
Q Consensus 889 ~~~~~lE~kl~eL~~~l~~e~~~ 911 (1530)
+....++.++.++..-+..+...
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~ 75 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQG 75 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544433
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.02 E-value=2.2 Score=46.20 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN-------GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~-------~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~ 1046 (1530)
++..|+.++.++..+.+.+.++..++-.....++... -.....+.+....+..+...++....-...|..|..
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKS 182 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554444444444444444433333333322 122222333444455555555555555555555655
Q ss_pred HHHHH
Q 000421 1047 VLRQQ 1051 (1530)
Q Consensus 1047 ~L~qq 1051 (1530)
+|+++
T Consensus 183 ~LEeq 187 (193)
T PF14662_consen 183 RLEEQ 187 (193)
T ss_pred HHHHH
Confidence 55554
No 78
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.00 E-value=8.3 Score=50.24 Aligned_cols=14 Identities=14% Similarity=0.123 Sum_probs=6.6
Q ss_pred HHHHHHHHHHcccC
Q 000421 611 LQLQSLMETLNATA 624 (1530)
Q Consensus 611 ~sl~~Lm~~l~~t~ 624 (1530)
.-+..+|-.|.++=
T Consensus 203 ~y~vkmlfkLHs~v 216 (980)
T KOG0980|consen 203 DYLVKMLFKLHSQV 216 (980)
T ss_pred HHHHHHHHHHHcCC
Confidence 33444555555443
No 79
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.98 E-value=3.7 Score=46.95 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000421 1018 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 1053 (1530)
Q Consensus 1018 ~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~l 1053 (1530)
..+.+++....+.++.+++.|..|+.|.+.|+.++.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677777888888888888888888888887664
No 80
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.97 E-value=3.7 Score=52.18 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 985 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 1035 (1530)
Q Consensus 985 Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~le 1035 (1530)
++++...++.-.++++++..+++..+.-+..++.+.+..++.++++++.++
T Consensus 254 i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 254 IEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444433
No 81
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.96 E-value=0.8 Score=59.11 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=8.4
Q ss_pred ccCCCCCCcccc
Q 000421 1485 LDDDSSIPFTVD 1496 (1530)
Q Consensus 1485 lD~~~~~Pf~~~ 1496 (1530)
|-++.++||-+-
T Consensus 594 L~~~pcipffy~ 605 (617)
T PF15070_consen 594 LGSNPCIPFFYR 605 (617)
T ss_pred CCCCCcccceee
Confidence 677778888543
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.94 E-value=0.3 Score=52.58 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~ 1052 (1530)
.+..|++.|+..+..+++....+-.+...++++...+..++..++.+...+..+.+.+..+...|..++..|+.|.
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 4455555555555555555555555555566666666666666766666777777777777777766666666553
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.94 E-value=1.4 Score=46.29 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 981 EVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1530)
Q Consensus 981 e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~ 1046 (1530)
.++.|...++.++.+++..+..+.......++...+....+.++..|..+....+.++..|.....
T Consensus 74 ~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555555555555555555554433
No 84
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.93 E-value=1.5 Score=50.43 Aligned_cols=81 Identities=21% Similarity=0.168 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD-----------AEKRVDELQDSVQRLAEKVSN 1040 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~-----------le~~i~~Lq~el~~leeki~~ 1040 (1530)
|.-+..++.|+..++-+++++..+..|.+++.+.+..+..+...-... -..-++.-|..+..||.++++
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666655555555554444332222222 223466677888888899998
Q ss_pred HHHHHHHHHHHH
Q 000421 1041 LESENQVLRQQA 1052 (1530)
Q Consensus 1041 Le~E~~~L~qq~ 1052 (1530)
|--|...|-|-.
T Consensus 213 Lm~EirnLLQle 224 (401)
T PF06785_consen 213 LMYEIRNLLQLE 224 (401)
T ss_pred HHHHHHHHHHhh
Confidence 888888776643
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.83 E-value=1.1 Score=53.18 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 000421 1037 KVSNLESENQVLRQ 1050 (1530)
Q Consensus 1037 ki~~Le~E~~~L~q 1050 (1530)
++..|+...+.|++
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555554
No 86
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.81 E-value=1.6 Score=57.02 Aligned_cols=47 Identities=26% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000421 886 ALQEAKNKLEKRVEELTWRLQIEKRLRTDLE---EAKSQEIAKLQEALHA 932 (1530)
Q Consensus 886 ~l~~~~~~lE~kl~eL~~~l~~e~~~~~~le---e~~~~E~~~L~~~le~ 932 (1530)
.+...++.++.+++.|+.++.+.....++++ ..+..|.++|+..+..
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777777777665555444433 2223344444444433
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=95.79 E-value=2.4 Score=58.21 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHhhhh
Q 000421 1458 SVSSEVISSMRVMMM 1472 (1530)
Q Consensus 1458 ~v~~~~i~~v~~~~~ 1472 (1530)
.+++.....+...+.
T Consensus 824 ~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 824 FLDEERRRKLVDIME 838 (880)
T ss_pred ccCHHHHHHHHHHHH
Confidence 455655555544443
No 88
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.75 E-value=6.4 Score=47.04 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 883 ETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLE 916 (1530)
Q Consensus 883 e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~le 916 (1530)
+...+......+...+.+++.+++.+...+..++
T Consensus 69 eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 69 EKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555544444443
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.69 E-value=0.82 Score=47.47 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 987 GLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEK 1022 (1530)
Q Consensus 987 ~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~ 1022 (1530)
.+...+.+.+++.+.++.+++..+.++..-+..++.
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333333343333333333333333
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.67 E-value=2.6 Score=50.74 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.1
Q ss_pred cchHHHHH
Q 000421 671 RTFYEFVN 678 (1530)
Q Consensus 671 ~~~~~F~~ 678 (1530)
++..+|+.
T Consensus 14 isL~~FL~ 21 (325)
T PF08317_consen 14 ISLQDFLN 21 (325)
T ss_pred cCHHHHHH
Confidence 44555554
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.67 E-value=1.1 Score=52.17 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 1042 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le 1042 (1530)
..++..|..++..++..+..+..+.+++...+...+.....+..++.+++.+..+....+.+.++.+..++
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777777777777777777777777666666667777777666666666666555555443
No 92
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.66 E-value=1.2 Score=49.26 Aligned_cols=26 Identities=38% Similarity=0.463 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1026 ELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1026 ~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
.+-+.+++|+++...|..|++.-.+|
T Consensus 161 ~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667788888888888888765544
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.65 E-value=4.7 Score=47.50 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.8
Q ss_pred hhcCCCCCccc
Q 000421 1292 CIQAPRTSRAS 1302 (1530)
Q Consensus 1292 ~i~~~~~~~~~ 1302 (1530)
.|-++....|+
T Consensus 471 aiAaedt~~~G 481 (499)
T COG4372 471 AIAAEDTVGPG 481 (499)
T ss_pred CCCCCCCcCCC
Confidence 44444444433
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.59 E-value=8.1 Score=47.13 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000421 1040 NLESENQVLR 1049 (1530)
Q Consensus 1040 ~Le~E~~~L~ 1049 (1530)
.|+.+...++
T Consensus 235 ~L~~~Ias~e 244 (420)
T COG4942 235 RLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 95
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.56 E-value=0.85 Score=58.73 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000421 889 EAKNKLEKRVEELTWRLQIEKR 910 (1530)
Q Consensus 889 ~~~~~lE~kl~eL~~~l~~e~~ 910 (1530)
......+.++.++++.+++..+
T Consensus 358 ~~~~q~~~ql~~le~~~~e~q~ 379 (980)
T KOG0980|consen 358 RRIEQYENQLLALEGELQEQQR 379 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3344566666666666665443
No 96
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=2.2 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1012 ELTKKLKDAEKRVDELQDSVQRLAE 1036 (1530)
Q Consensus 1012 el~~el~~le~~i~~Lq~el~~lee 1036 (1530)
++.++..++|.+.-.||..+..|+.
T Consensus 167 RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 167 RLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhh
Confidence 3444455555555555555554443
No 97
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.49 E-value=4.3 Score=51.11 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1022 KRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1022 ~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
..+.....++.++.++++.|-.|.+.|-
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445556666666666666665553
No 98
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.46 E-value=4.5 Score=47.78 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccchhhhhH---HHHHHHHHHHHHHHHHH
Q 000421 913 TDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDT---EKINSLTAEVENLKGLL 989 (1530)
Q Consensus 913 ~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~~l~~~e---~~~~~L~~e~~~Lk~~i 989 (1530)
+.+-..-++.+..|+.+++++...+.+++....-.++.+.......... .......+.+ .+++.++.++..|+..+
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~-~~~~~~~ere~lV~qLEk~~~q~~qLe~d~ 149 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGI-GARHFPHEREDLVEQLEKLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccc-cccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455666666666776666666655433333332211111000 0000011122 23334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 990 QSQTQTADEAKQAFTVSEAKNGELTKKLKDAE----K---RVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 990 ~~l~~~l~ele~~l~el~~~~~el~~el~~le----~---~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
..+..+.+++..+....+...+++-.++.-+= . .++.|-.|..-|.+++..++.|...+++.
T Consensus 150 qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 150 QSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444444442211 1 25566666777777777777777766653
No 99
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.45 E-value=13 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1010 NGELTKKLKDAEKRVDELQDSVQR 1033 (1530)
Q Consensus 1010 ~~el~~el~~le~~i~~Lq~el~~ 1033 (1530)
+.++.+++.+++.++..+.+.++.
T Consensus 197 ~keL~~kl~~l~~~l~~~~e~le~ 220 (617)
T PF15070_consen 197 KKELQKKLGELQEKLHNLKEKLEL 220 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433333
No 100
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.44 E-value=4.1 Score=58.29 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.3
Q ss_pred eEEEecCCCCCCchhhHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~ 170 (1530)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367899999999998776665
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=2.6 Score=48.27 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 883 ETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIK 946 (1530)
Q Consensus 883 e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~ 946 (1530)
++..+.+....+++++..|...++.-.....++ .+++.+++..+..++.++++++..+.+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~----~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL----QKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444222222222 233444444445555555555444433
No 102
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=15 Score=49.05 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=24.9
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHH
Q 000421 785 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 824 (1530)
Q Consensus 785 ~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr 824 (1530)
.++..-|..|..|..-+.-.+.-..+...++.++....+.
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~ 250 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERM 250 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhh
Confidence 5677777788877766655555555555566555554443
No 103
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=16 Score=49.26 Aligned_cols=15 Identities=27% Similarity=0.033 Sum_probs=6.0
Q ss_pred CCHHHHHHHHhcCcC
Q 000421 1437 LSIQQLYRISTMYWD 1451 (1530)
Q Consensus 1437 Ls~~Ql~kiL~~Y~~ 1451 (1530)
||+.=|.=.|.+|+|
T Consensus 1203 LSSLALVFALH~YkP 1217 (1293)
T KOG0996|consen 1203 LSSLALVFALHHYKP 1217 (1293)
T ss_pred HHHHHHHHHHHccCC
Confidence 333334444444443
No 104
>PTZ00014 myosin-A; Provisional
Probab=95.37 E-value=0.017 Score=76.56 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHhhHHHHHHHhhHHHHHHH
Q 000421 785 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNE 825 (1530)
Q Consensus 785 ~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~ 825 (1530)
..+..||++||||++|+.|.+.+.+++.||+.+||+++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999998864
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.30 E-value=1.1 Score=57.69 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1010 NGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1010 ~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
..+...+++.++.+++.+..++..-++...+|..+++.+-+
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33445556666666666666666666666666666555543
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.29 E-value=8.5 Score=45.47 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1530)
Q Consensus 976 ~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~lee 1036 (1530)
..+........+.+....+.+.....++..-.....+.+.++..+|.....|+.+++.++.
T Consensus 220 a~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 220 ARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444555555555555555555555554
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.29 E-value=2.7 Score=47.65 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAE 1021 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le 1021 (1530)
..++..++.....|+.++..+..++++++.++..++.....++..+.+.+
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666665555555554444444443
No 108
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.14 E-value=1.7 Score=62.16 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=4.8
Q ss_pred hhHcccCH
Q 000421 306 MDIVGISD 313 (1530)
Q Consensus 306 l~~lg~~~ 313 (1530)
...+|++.
T Consensus 140 ~~~lGv~~ 147 (1311)
T TIGR00606 140 ISHLGVSK 147 (1311)
T ss_pred HHHhCCCH
Confidence 34567765
No 109
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.13 E-value=0.021 Score=41.45 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=17.4
Q ss_pred HHHHHHHhhHHHHHHHHHhhH
Q 000421 784 EAAALKIQTNFRAYVAQRSYL 804 (1530)
Q Consensus 784 ~~AAi~IQ~~~Rg~~~Rr~y~ 804 (1530)
..+|++||+.||||++|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 468889999999999988873
No 110
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.11 E-value=18 Score=48.28 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=24.2
Q ss_pred HhhccCccccccC-cceEEecCCcCCCCCCCHHHHHHhh
Q 000421 84 TRYELNEIYTYTG-NILIAVNPFQRLPHLYDTHMMEQYK 121 (1530)
Q Consensus 84 ~Ry~~~~iYT~~G-~~LiavNP~~~l~~ly~~~~~~~y~ 121 (1530)
.||..-.+-| -| .|+=++-|--.+++-|+.++...-+
T Consensus 192 SrYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 4565555533 34 3566777887888888888766543
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.08 E-value=27 Score=50.09 Aligned_cols=10 Identities=30% Similarity=0.228 Sum_probs=4.7
Q ss_pred chhhhhhhhc
Q 000421 761 AAVILQSFLR 770 (1530)
Q Consensus 761 a~i~IQa~~R 770 (1530)
++-.+|..+|
T Consensus 231 ~i~~m~~~l~ 240 (1486)
T PRK04863 231 AFQDMEAALR 240 (1486)
T ss_pred HHHHHHHHHH
Confidence 3444555444
No 112
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.01 E-value=16 Score=46.96 Aligned_cols=7 Identities=29% Similarity=0.876 Sum_probs=3.6
Q ss_pred HHHHHHh
Q 000421 1386 ELEQWCH 1392 (1530)
Q Consensus 1386 ~LE~W~~ 1392 (1530)
.||+|+.
T Consensus 954 tIEdwil 960 (1265)
T KOG0976|consen 954 TIEDWIL 960 (1265)
T ss_pred cccccee
Confidence 4556653
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.95 E-value=7.5 Score=51.47 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1008 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1530)
Q Consensus 1008 ~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L 1048 (1530)
+...++.+++..++.++..++.++..+++.+..++.+...+
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444333
No 114
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.94 E-value=1.5 Score=53.40 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~L 1041 (1530)
++..|..++..++.++..+.-+.+++..-+......-+.+..++++++++..++..++.+.+++++.|
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555556666666666666666566666666666665555555555444433
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.89 E-value=4.7 Score=47.13 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 988 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1530)
Q Consensus 988 ~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~ 1039 (1530)
+|..|..++-+++.+....-.+++++...+......-..|+.++.+++++..
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444344444444444444444444555555554443
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.87 E-value=12 Score=47.20 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 000421 1012 ELTKKLKDAEKRVDELQDSVQRLAEKV------SNLESENQVLRQQ 1051 (1530)
Q Consensus 1012 el~~el~~le~~i~~Lq~el~~leeki------~~Le~E~~~L~qq 1051 (1530)
....++..+++++.....+++.+++++ .+++.|+..|++-
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 334445555555555555555555543 4567777777763
No 117
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.82 E-value=0.03 Score=40.61 Aligned_cols=21 Identities=48% Similarity=0.570 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 000421 735 LGNAARKIQRQTRTYIARKEF 755 (1530)
Q Consensus 735 l~~aa~~IQ~~~R~~~~Rk~~ 755 (1530)
...+|+.||+.||||++|++|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888888888887
No 118
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.81 E-value=8.5 Score=42.92 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1012 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1012 el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
....++..++..++..+-.+..|++.+..-..||..|-
T Consensus 158 ~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 158 KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666666666666655553
No 119
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.77 E-value=7 Score=47.24 Aligned_cols=24 Identities=4% Similarity=-0.099 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 848 YSYYKKLQRAIIVSQCGWRCRVAR 871 (1530)
Q Consensus 848 r~~~~~l~~a~i~iQ~~~R~~~ar 871 (1530)
+.+|+.++......|+...+...+
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K 324 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQK 324 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455666666666777666655443
No 120
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.70 E-value=32 Score=49.16 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000421 892 NKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPP 960 (1530)
Q Consensus 892 ~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~ 960 (1530)
..+..+...++..+.........++....+...+++.++.+|+.++..+..++..+...++.....+..
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~ 837 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEK 837 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444444333334444444445556677777777777777777776666666555544443
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.62 E-value=2.1 Score=44.35 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 1019 ~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~ 1052 (1530)
..+.+...|+.++..++.++..|...|+.|-.|.
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888887654
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.58 E-value=25 Score=47.72 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=19.9
Q ss_pred CceEEEeecceeeecccChhhhcc-----cchHHHHHHHHH
Q 000421 543 TDFTILHYAGEVTYQANHFLDKNK-----DYVVAEHQALLT 578 (1530)
Q Consensus 543 ~~F~i~Hyag~V~Y~~~~fl~kN~-----d~~~~~~~~ll~ 578 (1530)
++-.+.-|.-.+.-+.+|-+.-+. |+++||++.-..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~ 252 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQG 252 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhc
Confidence 344444444445555555555443 677777765554
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.57 E-value=8.8 Score=45.72 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=4.4
Q ss_pred ccchHHHHH
Q 000421 670 RRTFYEFVN 678 (1530)
Q Consensus 670 r~~~~~F~~ 678 (1530)
+++..+|+.
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 344455554
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=94.50 E-value=30 Score=47.82 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCH
Q 000421 1323 QSIVKSLNNYLKIMRANYVPS 1343 (1530)
Q Consensus 1323 ~~il~~L~~~~~~L~~~~V~~ 1343 (1530)
...+..|+.+...|...+++.
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~ 752 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPA 752 (895)
T ss_pred HHHHHHHHHHHHHhhhccchH
Confidence 334555566666666666655
No 125
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.31 E-value=6 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 884 TGALQEAKNKLEKRVEELTWRLQIEK 909 (1530)
Q Consensus 884 ~~~l~~~~~~lE~kl~eL~~~l~~e~ 909 (1530)
+....+.+..+++.+.+++.+++..+
T Consensus 503 ~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 503 LSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666655555443
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.25 E-value=8.6 Score=49.71 Aligned_cols=16 Identities=44% Similarity=0.850 Sum_probs=10.9
Q ss_pred eecceeeecccChhhhcc
Q 000421 549 HYAGEVTYQANHFLDKNK 566 (1530)
Q Consensus 549 Hyag~V~Y~~~~fl~kN~ 566 (1530)
+|.|++.|+. ||=-|-
T Consensus 79 Gy~~digyq~--fLYp~e 94 (594)
T PF05667_consen 79 GYRGDIGYQT--FLYPNE 94 (594)
T ss_pred CCCCCCcchh--hccCCh
Confidence 5889999974 664443
No 127
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=6 Score=50.89 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=19.0
Q ss_pred eeeecccChhhhcccchHHHHHHHHHhc
Q 000421 553 EVTYQANHFLDKNKDYVVAEHQALLTAA 580 (1530)
Q Consensus 553 ~V~Y~~~~fl~kN~d~~~~~~~~ll~~S 580 (1530)
.|.|--..|+-+|-|.-..=+..++..|
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 4778888888888886555555555543
No 128
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.12 E-value=4.9 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000421 921 QEIAKLQEALHAMQLRVDDANSL 943 (1530)
Q Consensus 921 ~E~~~L~~~le~le~ele~~~~~ 943 (1530)
.|+..|.+-+..++.++++++..
T Consensus 55 ~eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 55 QENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 129
>PRK01156 chromosome segregation protein; Provisional
Probab=94.11 E-value=5.5 Score=54.85 Aligned_cols=14 Identities=0% Similarity=0.192 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHhhh
Q 000421 1458 SVSSEVISSMRVMM 1471 (1530)
Q Consensus 1458 ~v~~~~i~~v~~~~ 1471 (1530)
.++++-...|...+
T Consensus 837 ~lD~~~~~~l~~~l 850 (895)
T PRK01156 837 FLDEDRRTNLKDII 850 (895)
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555544444
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.08 E-value=9.8 Score=43.72 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 883 ETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLV 944 (1530)
Q Consensus 883 e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l 944 (1530)
+...++.....|.+++.++..+++..++...+. ..+.++++.++..++..+.+.+..+
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~----~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQS----KAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555544444333332222 2445555555666655555544444
No 131
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.07 E-value=6.7 Score=47.51 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000421 398 DALAKTIYSRLFDWIV 413 (1530)
Q Consensus 398 dalak~lY~~lF~wiV 413 (1530)
-+|.+.+|+-|=+|+=
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 3688888888877754
No 132
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.06 E-value=5.6 Score=45.97 Aligned_cols=41 Identities=34% Similarity=0.470 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1010 NGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1010 ~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
.+-+-.++...++.-+.+.++++.|++-+..|+...+.++-
T Consensus 254 re~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 254 REFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 33344444466666677778888888888888888777654
No 133
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.98 E-value=0.41 Score=56.97 Aligned_cols=132 Identities=11% Similarity=0.082 Sum_probs=74.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhcc-CCCCccchhhHHHhchHHHHHHHhhcCC
Q 000421 1318 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEFVKAGLAELEQWCHDSTE 1396 (1530)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1396 (1530)
+...+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. .+..+-.--.++...|..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567889999999998654 5689999999999999999999999998764 3455555567899999999999998710
Q ss_pred --CcccchHHHhHHHHHHHHHHhhCCCCccCHHHHHhccCCCCCHHHHHHHHhcCc
Q 000421 1397 --EFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYW 1450 (1530)
Q Consensus 1397 --~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kiL~~Y~ 1450 (1530)
...+.....|..++|.++||....-..--...+...-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 124566789999999999999764222211145445588999999999988774
No 134
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.94 E-value=16 Score=46.31 Aligned_cols=19 Identities=11% Similarity=-0.106 Sum_probs=9.7
Q ss_pred CCccccchhHHHHHHHHHH
Q 000421 1176 DNNDRLSYWLSNASTLLLL 1194 (1530)
Q Consensus 1176 ~d~~~l~fWLSN~~~Ll~~ 1194 (1530)
.+++.--.||.-..+=|.+
T Consensus 313 selE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 313 SELESRNSALEKRIEDLEY 331 (546)
T ss_pred ccccccChhHHHHHHHHHh
Confidence 4455555555555554443
No 135
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.86 E-value=0.42 Score=53.02 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 994 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 994 ~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
.++..++.++..++....+..+.+..+.+++..|+-+...+++++.+|+.||..|-+
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344455566666667777777777888888877755
No 136
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.82 E-value=8.3 Score=49.48 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLL 989 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i 989 (1530)
.|+.+...++.++
T Consensus 341 ~L~~eL~~~r~eL 353 (522)
T PF05701_consen 341 SLEAELNKTRSEL 353 (522)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 137
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.78 E-value=5.7 Score=41.43 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 979 TAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 979 ~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
++++..|+.+++.+..++..++..+..+..++..+.+.+...+.++..|.....++...+...+.+...+.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666666666666666666666666666666644433
No 138
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.77 E-value=47 Score=47.63 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 848 YSYYKKLQRAIIVSQCGWRCRVARRELR--KLKMAARETGALQEAKNKLEKRVEELTWRLQIEK 909 (1530)
Q Consensus 848 r~~~~~l~~a~i~iQ~~~R~~~arkel~--~lk~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~ 909 (1530)
...+..++..+..|+.-.+...-.+.|. +++.....+..+++....|+.+-..++.-+...+
T Consensus 660 ~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 660 QEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544443333333332 3334445566666666666665555555554333
No 139
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.76 E-value=0.042 Score=55.56 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 140
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.59 E-value=3.2 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.609 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1019 DAEKRVDELQDSVQRLAEKVSNLES 1043 (1530)
Q Consensus 1019 ~le~~i~~Lq~el~~leeki~~Le~ 1043 (1530)
.++....++++..+++.+++.+++.
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 141
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.49 E-value=4.4 Score=48.47 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1020 AEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1020 le~~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
.-..+.+.+++-+..++-+.+|..++..++.-
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666667777777777777653
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.48 E-value=14 Score=46.92 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 875 RKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQ---EIAKLQEALHAMQLRVDDANSLVIKEREAA 951 (1530)
Q Consensus 875 ~~lk~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~---E~~~L~~~le~le~ele~~~~~l~~e~~~~ 951 (1530)
.........+..........-.++.++...+..++-...+|...... |...+..+..++-.++..+++.+..-+...
T Consensus 450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qe 529 (786)
T PF05483_consen 450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQE 529 (786)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHhhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 952 RKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSV 1031 (1530)
Q Consensus 952 ~~~~~e~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el 1031 (1530)
.+...+.+...+. ...-..+|+.-.+.++...++++..+..-+......+-+.....+.+.-++..+..|...+
T Consensus 530 e~~~kqie~Lee~------~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqv 603 (786)
T PF05483_consen 530 EKMLKQIENLEET------NTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQV 603 (786)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000421 1032 QRLAEKVSNLESENQVLRQQALA 1054 (1530)
Q Consensus 1032 ~~leeki~~Le~E~~~L~qq~l~ 1054 (1530)
+.-...+..|+.+|+.|+++...
T Consensus 604 Enk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 604 ENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
No 143
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=10 Score=49.93 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000421 890 AKNKLEKRVEELTWRLQIEKR 910 (1530)
Q Consensus 890 ~~~~lE~kl~eL~~~l~~e~~ 910 (1530)
.+..|+-++.+++.++.-.++
T Consensus 301 ~kt~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 301 KKTKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred HhhhhhhhhHHHHHHhhhhhh
Confidence 345566677777777654443
No 144
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.43 E-value=12 Score=40.68 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1020 AEKRVDELQDSVQRLAEKVSNLESE 1044 (1530)
Q Consensus 1020 le~~i~~Lq~el~~leeki~~Le~E 1044 (1530)
++..+..|+.+.+++++++.....+
T Consensus 163 aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 163 AERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHcccHHHHHHhhHHHHHH
Confidence 3344444444444444444444433
No 145
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.32 E-value=16 Score=40.55 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 976 NSLTAEVENLKGLLQSQTQTADEAKQAF 1003 (1530)
Q Consensus 976 ~~L~~e~~~Lk~~i~~l~~~l~ele~~l 1003 (1530)
++|..++..++..+++...++..++..+
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555433
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.24 E-value=38 Score=48.76 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
-..+|+|.+|||||.+.-.++.+|..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 147
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.21 E-value=8.8 Score=47.73 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000421 1030 SVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1030 el~~leeki~~Le~E~~~L~ 1049 (1530)
++..++.++..++.+...++
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.19 E-value=3.6 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=15.9
Q ss_pred cccCCeEEeecCCCCCCCCCCC
Q 000421 621 NATAPHYIRCVKPNNVLKPSIF 642 (1530)
Q Consensus 621 ~~t~~h~IrCIkPN~~~~~~~f 642 (1530)
..|..+||.|=+|.....|...
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~PV 442 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNPV 442 (717)
T ss_pred CCcceEEEeccCCCCCCCCCCc
Confidence 3456799999999877665443
No 149
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.93 E-value=10 Score=45.07 Aligned_cols=10 Identities=30% Similarity=0.135 Sum_probs=6.2
Q ss_pred HHHHHHHHHH
Q 000421 833 KAAIIAQAQW 842 (1530)
Q Consensus 833 ~aA~~IQ~~~ 842 (1530)
.|.+.||...
T Consensus 85 ~Asv~IQara 94 (552)
T KOG2129|consen 85 LASVEIQARA 94 (552)
T ss_pred hhhhHHhhcc
Confidence 4666777644
No 150
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.93 E-value=26 Score=41.90 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 000421 892 NKLEKRVEELTWRLQ 906 (1530)
Q Consensus 892 ~~lE~kl~eL~~~l~ 906 (1530)
..+++++..|+..+.
T Consensus 120 ~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 120 VDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 334444444444443
No 151
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.79 E-value=14 Score=50.99 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 000421 1034 LAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1034 leeki~~Le~E~~~L~ 1049 (1530)
+.+.+.+..++...+.
T Consensus 270 Ls~~L~~~t~~~n~l~ 285 (1109)
T PRK10929 270 LSQALNQQAQRMDLIA 285 (1109)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 152
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.75 E-value=0.069 Score=54.66 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999987754
No 153
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.74 E-value=11 Score=49.43 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 991 SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1530)
Q Consensus 991 ~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~ 1047 (1530)
.++.++.-+++++.-+....+++..-..-+|+++.+.-+.++.-++.-..|++|+..
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333334444444444444434444445555443
No 154
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.70 E-value=14 Score=47.62 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 980 AEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD 1019 (1530)
Q Consensus 980 ~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~ 1019 (1530)
.|..+++.++++...+++.++-++...++++.-|.-.++.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQ 533 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH
Confidence 3444455555555555555555555555555433333333
No 155
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.63 E-value=9.5 Score=48.48 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=14.3
Q ss_pred CCCCccchhhHHHhchHHHHHHHhhcCC
Q 000421 1369 RECCSFSNGEFVKAGLAELEQWCHDSTE 1396 (1530)
Q Consensus 1369 ~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1396 (1530)
+|..-|++- ++-.|+++.|+
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 466778875 55569998875
No 156
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.62 E-value=8.3 Score=47.24 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
.++..+..++.+|..++-++.+++..+.-+..++..-.......-.+++.+..++++.-.+......+-++|++.|+.
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455566666666666666555555544444443333333333444444455555544444455555555555553
No 157
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.60 E-value=20 Score=39.79 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 982 VENLKGLLQSQTQTADEAKQAFTVSEAK 1009 (1530)
Q Consensus 982 ~~~Lk~~i~~l~~~l~ele~~l~el~~~ 1009 (1530)
.++|...++.++.++++.+..+..++..
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 158
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.57 E-value=25 Score=40.85 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 925 KLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFT 1004 (1530)
Q Consensus 925 ~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~ 1004 (1530)
.++..+.+.+.++.+++.....+...+.+-...- ..-++++..|+.++--|++++++..++..-.+..+.
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq----------es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi 252 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ----------ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555444444444443332211 124567888899999999999988887776666666
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1005 VSEAKNGELTKK--------LKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1530)
Q Consensus 1005 el~~~~~el~~e--------l~~le~~i~~Lq~el~~leeki~~Le~E~ 1045 (1530)
..+..-.+..+. .--++.+..+|..+...|.+.+-..+.|.
T Consensus 253 niQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEK 301 (305)
T PF14915_consen 253 NIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEK 301 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 666555333333 33355556666666666666666665554
No 159
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.54 E-value=49 Score=44.21 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
++++.++.++..++..++.+..++.+.+..+..++.....+..-.......+..+.-.++...+++.+|+.+...++
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556666667777777777777766666666666555555554444556666666666667777777776666644
No 160
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.53 E-value=11 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=14.1
Q ss_pred CCCceEEEeecceeeecccChhh
Q 000421 541 SRTDFTILHYAGEVTYQANHFLD 563 (1530)
Q Consensus 541 ~~~~F~i~Hyag~V~Y~~~~fl~ 563 (1530)
.+..|.+.|-+|-=.=.. .|+.
T Consensus 377 ~~~ryy~~H~~GvH~V~L-~wl~ 398 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL-PWLS 398 (717)
T ss_pred CCceEEEEecCccEEEEe-ccHH
Confidence 456799999998622223 3665
No 161
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.51 E-value=52 Score=44.38 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1014 TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1014 ~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
.+.++++|.+..+-+..+++....+..|++++..+.
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 334445555555555555555555666666555444
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=10 Score=48.98 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGEL------TKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 1045 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el------~~el~~le~~i~~Lq~el~~leeki~~Le~E~ 1045 (1530)
.+++..+..|++++..+...+.+++.+-..-+...++..++. ..-....+.++.++..++.+....+.+++.+.
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~ 815 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL 815 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 345555666666666555555555543333333222222110 00111222333333333555555566666666
Q ss_pred HHHHHH
Q 000421 1046 QVLRQQ 1051 (1530)
Q Consensus 1046 ~~L~qq 1051 (1530)
+.++++
T Consensus 816 ~~~keq 821 (970)
T KOG0946|consen 816 TQLKEQ 821 (970)
T ss_pred HHHHHH
Confidence 666654
No 163
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=35 Score=42.31 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGEL---TKKLKDAEKRVDELQDSVQRLA 1035 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el---~~el~~le~~i~~Lq~el~~le 1035 (1530)
.|+.++..++-.-..+..+..+++++.-.+++.+..+ +-+...+..++.+|.++.+-|.
T Consensus 153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln 214 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN 214 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4555555555544445555555555444444433221 1223344445555554444333
No 164
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=18 Score=43.87 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 1019 ~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~ 1052 (1530)
...+.+.+....+.+.+..|.++..|-+.|+++.
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ 419 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQE 419 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777777654
No 165
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.28 E-value=25 Score=42.36 Aligned_cols=11 Identities=55% Similarity=0.637 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 000421 1040 NLESENQVLRQ 1050 (1530)
Q Consensus 1040 ~Le~E~~~L~q 1050 (1530)
.|+.|.++|+|
T Consensus 407 eleqevkrLrq 417 (502)
T KOG0982|consen 407 ELEQEVKRLRQ 417 (502)
T ss_pred HHHHHHHHhcc
Confidence 34444444444
No 166
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.28 E-value=44 Score=43.05 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=14.4
Q ss_pred ccCCCCCHHHHH-------HHHhcCcCCCCC
Q 000421 1432 DLCPVLSIQQLY-------RISTMYWDDKYG 1455 (1530)
Q Consensus 1432 ~~C~~Ls~~Ql~-------kiL~~Y~~d~~e 1455 (1530)
+.|.+|-.-+|. +|-+.|.+.+++
T Consensus 632 ~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 632 DACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 567777776664 455566654443
No 167
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.28 E-value=0.089 Score=57.23 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=23.3
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 143 m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+...+...+|+|.|++|+|||...+.++.++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3566778999999999999999999999888764
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.25 E-value=1.7 Score=48.49 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
..+.+++.++.++++++.+...+.. +...+++....+..+.+.+++.+.++|+++++.++.++..|+.++..++..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655555554433 222334444445555566677777777777777777777777777777654
No 169
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.23 E-value=24 Score=45.86 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=7.0
Q ss_pred eccceeecccch
Q 000421 712 IGKTKVFLRAGQ 723 (1530)
Q Consensus 712 iGkTkVFlr~~~ 723 (1530)
.|.|...|..+.
T Consensus 59 ~Ges~~~f~~w~ 70 (569)
T PRK04778 59 TGQSEEKFEEWR 70 (569)
T ss_pred CcccHHHHHHHH
Confidence 566666665543
No 170
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.16 E-value=35 Score=43.92 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000421 1033 RLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1033 ~leeki~~Le~E~~~L~q 1050 (1530)
.++.....+.++.+.+++
T Consensus 255 ~l~~a~~q~~ee~~~~re 272 (716)
T KOG4593|consen 255 ELERALSQLREELATLRE 272 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344455555555544
No 171
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.13 E-value=25 Score=45.20 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 861 SQCGWRCRVAR--------RELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHA 932 (1530)
Q Consensus 861 iQ~~~R~~~ar--------kel~~lk~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~ 932 (1530)
+|-.+|-...- .+-.+|...+.++..+..+-..-..+.+++...+.-.+..+..+++....|.++.+. .
T Consensus 72 lqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~---~ 148 (739)
T PF07111_consen 72 LQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQR---L 148 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH---H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 933 MQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVII-QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 1011 (1530)
Q Consensus 933 le~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~~l~-~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~ 1011 (1530)
-+.++..+......+...+....+.++..++.+.... .+...+.....+.+.|++++....++++..-..+..++.-..
T Consensus 149 Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvG 228 (739)
T PF07111_consen 149 HQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVG 228 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1012 ELT---KKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1012 el~---~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
++. ..-...+.+...|.++++.|++.-..|..-..-|.
T Consensus 229 eq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLq 269 (739)
T PF07111_consen 229 EQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQ 269 (739)
T ss_pred hhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 172
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.92 E-value=1.8 Score=47.94 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSN 1040 (1530)
Q Consensus 971 ~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~ 1040 (1530)
....+..|+.++..|+..+..+..++.+....++.++.+...+.-++..++.++..++.+...|=+....
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888888888888888888777777777777777777777777777777777665443
No 173
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.91 E-value=0.1 Score=53.04 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 174
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.70 E-value=33 Score=40.35 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000421 1032 QRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1032 ~~leeki~~Le~E~~~L~qq 1051 (1530)
+.+...+..|..|..+|+++
T Consensus 225 e~~~shI~~Lr~EV~RLR~q 244 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQ 244 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.55 E-value=0.21 Score=51.28 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.8
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 145 NEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.......|+|.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 334567999999999999999999998875
No 176
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.54 E-value=6.7 Score=44.43 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~ 1052 (1530)
.+...|..|+..|-+.++.+++..+.+...+ .--+..+.-+|.++......++.|+.+++.++.|+.+.++.+
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdl-------q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDL-------QVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666665555555554444443332 223334445666666666677777777777777777666544
Q ss_pred h
Q 000421 1053 L 1053 (1530)
Q Consensus 1053 l 1053 (1530)
.
T Consensus 133 ~ 133 (307)
T PF10481_consen 133 S 133 (307)
T ss_pred c
Confidence 3
No 177
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.53 E-value=0.14 Score=46.59 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 178
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.50 E-value=0.12 Score=56.16 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999887653
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.43 E-value=13 Score=46.30 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1020 AEKRVDELQDSVQRLAEKVSNLESE 1044 (1530)
Q Consensus 1020 le~~i~~Lq~el~~leeki~~Le~E 1044 (1530)
.+.++..++.++..++.++..++..
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555544443
No 180
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.43 E-value=10 Score=39.25 Aligned_cols=61 Identities=23% Similarity=0.430 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1530)
Q Consensus 976 ~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~ 1039 (1530)
..++.++..++.+.+.....+...+.. .+.+...+..++.+++.++++|..+..-|-..+.
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEAS---WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444333333332 3333445556666666666666666555554443
No 181
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.41 E-value=0.11 Score=60.65 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3567888999999999999999999874
No 182
>PF13514 AAA_27: AAA domain
Probab=91.38 E-value=68 Score=45.42 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.3
Q ss_pred ecCCCCCCchhhHHHHHHHHH
Q 000421 154 VSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 154 isGeSGaGKTe~~k~i~~yla 174 (1530)
|-|+.-||||++..+|..-|-
T Consensus 1 IyGpNEAGKST~l~fI~~lLF 21 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLF 21 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhc
Confidence 679999999998887777653
No 183
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.30 E-value=7 Score=46.23 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1530)
Q Consensus 975 ~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~ 1047 (1530)
+..++.+++.++.+++..++.+.+++..+...+..........+.......++..++...+.++..++.....
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333222112222223333334444444444444444444433
No 184
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.25 E-value=0.19 Score=58.47 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4456899999999999999999987664
No 185
>PTZ00121 MAEBL; Provisional
Probab=91.19 E-value=80 Score=43.87 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=24.2
Q ss_pred CccccCCCCChHHHHHHHHHhhccCccccccCc
Q 000421 65 DDMTKLSYLHEPGVLQNLATRYELNEIYTYTGN 97 (1530)
Q Consensus 65 ~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~ 97 (1530)
=|||.=..+++..++.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 377777777777777777777777778888663
No 186
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.12 E-value=30 Score=38.87 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 999 AKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 999 le~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
++....++-+-.+++...++..+..+--|++++...+.+|+.|++.+..+.+
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444455555566666666666666666666655544
No 187
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.07 E-value=34 Score=45.70 Aligned_cols=30 Identities=7% Similarity=0.154 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHH-HHHhcCCCHHHHHHH
Q 000421 1320 AHWQSIVKSLNNYLK-IMRANYVPSFLIRKV 1349 (1530)
Q Consensus 1320 ~~~~~il~~L~~~~~-~L~~~~V~~~l~~Q~ 1349 (1530)
.+++.+-+-+..=.+ .++..+|++.+++|+
T Consensus 835 ~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y 865 (1072)
T KOG0979|consen 835 TTMDELDQAITDELTRALKFENVNEDAVQQY 865 (1072)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 344555444444444 566677777755543
No 188
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.92 E-value=67 Score=42.84 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1015 KKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1015 ~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
+++.++..+...|-.+-..+...+..++++..+-++
T Consensus 460 ~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 460 RELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555544443
No 189
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.84 E-value=0.23 Score=59.27 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.9
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+.+.+.+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455566554 5999999999999999999998853
No 190
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.84 E-value=0.29 Score=60.47 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+++.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 444555566677666789999999999999999988877643
No 191
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.82 E-value=28 Score=37.95 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~ 1046 (1530)
.|....+++.+..+..+..+..+..++.+.+..-+-..+.+..++..++.|++.+.....+...+..++.
T Consensus 127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555554444444444555556666666666666666666555555544
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.77 E-value=1.4 Score=52.45 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHH
Q 000421 1321 HWQSIVKSLNNYL 1333 (1530)
Q Consensus 1321 ~~~~il~~L~~~~ 1333 (1530)
.|..-+++|=.-+
T Consensus 289 ~WT~AlK~lLtnl 301 (314)
T PF04111_consen 289 EWTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5655555544433
No 193
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.74 E-value=0.32 Score=50.30 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..+..|+++|++|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446689999999999999999999876
No 194
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.69 E-value=21 Score=45.62 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLK 986 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk 986 (1530)
++.+++.+...+.
T Consensus 255 ~l~~l~~~l~~l~ 267 (498)
T TIGR03007 255 RIEALEKQLDALR 267 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 195
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.59 E-value=78 Score=43.83 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHH
Q 000421 1324 SIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQL 1361 (1530)
Q Consensus 1324 ~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~l 1361 (1530)
..+..+..+-..+...++...+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555555555555544443
No 196
>PRK06696 uridine kinase; Validated
Probab=90.54 E-value=0.3 Score=55.41 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 134 AVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.||+..+.. ..++.--|.|+|.||||||+.|+.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555442 3556778999999999999999999998854
No 197
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.49 E-value=46 Score=39.94 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADE 998 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~e 998 (1530)
.++.|+.|++.|+..+....+...+
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444433
No 198
>PRK10698 phage shock protein PspA; Provisional
Probab=90.49 E-value=32 Score=39.11 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRV--D---------ELQDSVQRLAEKVSN 1040 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i--~---------~Lq~el~~leeki~~ 1040 (1530)
...+..|+.+....+..++.+...+..++.++.+.+.....+..+...++.+. . .-....+++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777766666655544321 1 122455667777777
Q ss_pred HHHHHHH
Q 000421 1041 LESENQV 1047 (1530)
Q Consensus 1041 Le~E~~~ 1047 (1530)
++.+-+.
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 7766544
No 199
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.44 E-value=0.16 Score=51.68 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.7
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 200
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=40 Score=41.04 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1014 TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1014 ~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
.+++.+.-..++....++.+.-+.-.+|+++.+.+.
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544
No 201
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.36 E-value=0.18 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 202
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.35 E-value=0.2 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~ 170 (1530)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999976
No 203
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.30 E-value=0.41 Score=54.55 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.5
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000421 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~ 178 (1530)
..++..-|.|+|.||||||+.++.+...+..-++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3477889999999999999999999999876554
No 204
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.27 E-value=0.22 Score=55.75 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999877
No 205
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.26 E-value=21 Score=39.81 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAK 1000 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele 1000 (1530)
++..|+.+.+-|++.+..+..+.+++.
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 206
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.25 E-value=0.21 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~y 172 (1530)
...|+|.|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 688999999999999999877763
No 207
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.24 E-value=12 Score=42.36 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 995 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 995 ~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~ 1052 (1530)
+..-+-+....+++.++++..++...+.++.-|+..+......+..|+.|+++++...
T Consensus 68 Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 68 ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455566677777778888888888888888888888888888887653
No 208
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.20 E-value=0.19 Score=56.08 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999999875
No 209
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.19 E-value=53 Score=40.14 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1008 AKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1530)
Q Consensus 1008 ~~~~el~~el~~le~~i~~Lq~el~~lee 1036 (1530)
.+.+++.+++....-+.++|...+.+.+-
T Consensus 375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~l 403 (622)
T COG5185 375 QEREKLTRELDKINIQSDKLTKSVKSRKL 403 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHH
Confidence 33444444554444455555554444333
No 210
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.16 E-value=0.29 Score=56.96 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.8
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+..|.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444322 347999999999999999999998753
No 211
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.13 E-value=35 Score=44.44 Aligned_cols=60 Identities=23% Similarity=0.368 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRL 1034 (1530)
Q Consensus 975 ~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~l 1034 (1530)
...+..+.+.++..+..+...+.+......+++...+++..++.+++.+...+.+.+..+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333334444444444444443333333333333
No 212
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.12 E-value=3.5 Score=49.19 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 978 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 978 L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
+..+.+.++.+..++.+++++++.+..++.++..+++.+...++.+..+...+...+.-.+..++++...+.
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443333333333333333333333333333333333333334444443333
No 213
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.11 E-value=28 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=12.0
Q ss_pred ccccchhhhhccHHHHHHhhh
Q 000421 1107 PQKTLNEKQQENQDLLIKCIS 1127 (1530)
Q Consensus 1107 ~~~~~~e~~~~~~~~li~~l~ 1127 (1530)
..+.+..+..+|.+++.+.+.
T Consensus 477 ~~~~Fi~~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 477 DLKAFICCDSEDYLLFVKKIK 497 (1072)
T ss_pred ccceeeeechHHHHHHHHHhh
Confidence 344555555666666655553
No 214
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.98 E-value=0.2 Score=55.62 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998877
No 215
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.85 E-value=0.2 Score=54.13 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999999866
No 216
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.80 E-value=0.44 Score=53.82 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+-.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334445545667889999999999999999999988753
No 217
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.74 E-value=66 Score=42.97 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHH--HHHHHHHH
Q 000421 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL--KDAEKRVDELQD---SVQRLA--EKVSNLES 1043 (1530)
Q Consensus 971 ~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el--~~le~~i~~Lq~---el~~le--eki~~Le~ 1043 (1530)
....+.+|..++...+.++..+..+++..+++...++-+..-+.+++ +..|.....-.. .-++++ .+|.+|+.
T Consensus 118 ~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEa 197 (769)
T PF05911_consen 118 KEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEA 197 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666655555554444333332 222222211111 112222 38889999
Q ss_pred HHHHHHHH
Q 000421 1044 ENQVLRQQ 1051 (1530)
Q Consensus 1044 E~~~L~qq 1051 (1530)
|-++|+--
T Consensus 198 EC~rLr~l 205 (769)
T PF05911_consen 198 ECQRLRAL 205 (769)
T ss_pred HHHHHHHH
Confidence 99998863
No 218
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.67 E-value=44 Score=38.48 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1025 DELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1025 ~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
..++.++....+.+..|+.+...|+.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555444
No 219
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.67 E-value=0.21 Score=55.38 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
|-|+|.||||||+.|+.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 67999999999999999999997543
No 220
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.67 E-value=3.5 Score=51.68 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG---ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~---el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
..++.|+.++..|+..+++++.++++++.++..+..+.. ....++...+.++..|+.++.+-...+..|+.++..++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554443332 23345666777778888888777778888888777776
Q ss_pred H
Q 000421 1050 Q 1050 (1530)
Q Consensus 1050 q 1050 (1530)
+
T Consensus 509 k 509 (652)
T COG2433 509 K 509 (652)
T ss_pred H
Confidence 4
No 221
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=80 Score=41.37 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 988 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 988 ~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~ 1052 (1530)
.++.......+.......++...++..+++++++..+..+..+++.+..+...+++|+..|+.+.
T Consensus 553 ~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 553 SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555555555556666666666666666666666666666666543
No 222
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=89.62 E-value=10 Score=48.53 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhccCCCCccchhhHHHhchHHHHHHHhhcCCC
Q 000421 1318 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEE 1397 (1530)
Q Consensus 1318 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~Qlf~~Ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~ 1397 (1530)
++++....+..|...+..|+.. +++.....+..++..-|+-.+++.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 3455667899999999999999 99999999999999999999999999976 55666677777766554443332
Q ss_pred cccchHHHhHHHHHHHHHHhhCCCCccCH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 000421 1398 FAGSAWDELRHIRQAVGFLVIHQKPKKTL--------------KEITNDL-CPVLSIQQLYRIST 1447 (1530)
Q Consensus 1398 ~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ls~~Ql~kiL~ 1447 (1530)
+....-.++..|.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44555589999999999999987554322 1222222 25788888888875
No 223
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.56 E-value=0.33 Score=51.59 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998765
No 224
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.51 E-value=0.42 Score=57.55 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=36.6
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 117 ~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
...|+-....++-.|--.+. ....+...+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~--~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVE--RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHH--HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45566555554443333222 233344455545799999999999999999999875
No 225
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.49 E-value=73 Score=40.69 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=7.3
Q ss_pred HHHHHHhcccc
Q 000421 674 YEFVNRFGILA 684 (1530)
Q Consensus 674 ~~F~~ry~~l~ 684 (1530)
..|+.=|..|.
T Consensus 87 ~afl~vye~L~ 97 (629)
T KOG0963|consen 87 AAFLDVYEKLI 97 (629)
T ss_pred HHHHHHHHHHh
Confidence 35777777664
No 226
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.44 E-value=67 Score=43.45 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhCC
Q 000421 695 QVACQMILDKKGL 707 (1530)
Q Consensus 695 ~~~~~~ll~~~~~ 707 (1530)
+.....+++.+++
T Consensus 84 r~v~~~VV~~L~L 96 (754)
T TIGR01005 84 NEILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHHHcCC
Confidence 3455566666655
No 227
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.41 E-value=0.2 Score=56.47 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.6
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000421 151 SILVSGESGAGKTETTKML 169 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i 169 (1530)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987755
No 228
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=56 Score=40.79 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 880 AARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEA 918 (1530)
Q Consensus 880 ~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~ 918 (1530)
..+++...++.++.|..++..++..+.+......++.+.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeh 367 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEH 367 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666777777777777665555444455433
No 229
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.24 E-value=0.29 Score=54.80 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.+..-|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567788999999999999999987664
No 230
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.23 E-value=0.38 Score=57.52 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=36.4
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 117 ~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.|+-....++-.|--. ..........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAAD--KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHH--HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 456776666666443321 22344444344 46778889999999999999998875
No 231
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.19 E-value=16 Score=42.13 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1011 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESE 1044 (1530)
Q Consensus 1011 ~el~~el~~le~~i~~Lq~el~~leeki~~Le~E 1044 (1530)
..+..++.+++..+..|..+...-+.....|+.+
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.13 E-value=3.4 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1019 DAEKRVDELQDSVQRLAEKVSNLES 1043 (1530)
Q Consensus 1019 ~le~~i~~Lq~el~~leeki~~Le~ 1043 (1530)
.++...+.+..++.+|+.+..+|+.
T Consensus 181 ~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 181 RLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3333333344444444444444433
No 233
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.09 E-value=52 Score=38.50 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000421 980 AEVENLKG 987 (1530)
Q Consensus 980 ~e~~~Lk~ 987 (1530)
++...++.
T Consensus 165 aei~~lk~ 172 (294)
T COG1340 165 AEIDELKK 172 (294)
T ss_pred HHHHHHHH
Confidence 33333333
No 234
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.96 E-value=0.38 Score=57.06 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.1
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+.+.+. ...|+|+|.+|||||+.++.+++++..
T Consensus 125 L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3344443 357999999999999999999998864
No 235
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.92 E-value=0.25 Score=50.15 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 236
>PTZ00301 uridine kinase; Provisional
Probab=88.86 E-value=0.28 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
|-|+|.||||||+.|+.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999998887664
No 237
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.76 E-value=32 Score=46.49 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=7.9
Q ss_pred HHhccCCCCCHHHHHHH
Q 000421 1429 ITNDLCPVLSIQQLYRI 1445 (1530)
Q Consensus 1429 i~~~~C~~Ls~~Ql~ki 1445 (1530)
|+-|.-|.++.....-+
T Consensus 659 IiID~pp~~~~~d~~~l 675 (754)
T TIGR01005 659 VVVDVGTADPVRDMRAA 675 (754)
T ss_pred EEEcCCCcchhHHHHHh
Confidence 33355555554444433
No 238
>PRK08233 hypothetical protein; Provisional
Probab=88.75 E-value=0.24 Score=53.88 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998874
No 239
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.56 E-value=0.27 Score=52.84 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yl 173 (1530)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 240
>PLN03188 kinesin-12 family protein; Provisional
Probab=88.46 E-value=70 Score=44.24 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000421 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 166 (1530)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 166 (1530)
.||..+-.-.-.-.-.|-|-||+.-|.+|||||.|.
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 455544333222234788999999999999999875
No 241
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.45 E-value=0.32 Score=52.90 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35568999999999999999999998864
No 242
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.39 E-value=4.6 Score=36.88 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~ 1039 (1530)
.|+.++..|+..++.+..+++..+..+..+..+.+....++..+-.++.+|.++++.+..++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777776666666666666666666666555543
No 243
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.38 E-value=0.32 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 244
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.34 E-value=0.31 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999988753
No 245
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.26 E-value=0.33 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999866
No 246
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.21 E-value=64 Score=38.43 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 983 ENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSV 1031 (1530)
Q Consensus 983 ~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el 1031 (1530)
+.+=.+++.+.+++++++..+..+-.+++++..+...-..+..+|..++
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444443
No 247
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.17 E-value=0.3 Score=56.57 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.1
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000421 150 NSILVSGESGAGKTETTKML 169 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i 169 (1530)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999887654
No 248
>PRK07261 topology modulation protein; Provisional
Probab=88.11 E-value=0.34 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yl 173 (1530)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999987654
No 249
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.00 E-value=91 Score=39.95 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000421 1008 AKNGELTKKLKDAEKRVDELQD 1029 (1530)
Q Consensus 1008 ~~~~el~~el~~le~~i~~Lq~ 1029 (1530)
.+.+++.+++..+|..+.++..
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555544444433
No 250
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.95 E-value=11 Score=44.51 Aligned_cols=77 Identities=12% Similarity=0.244 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
.++..++..+..++..++.+.+++++.++.+.+++..++.....+.............+.++...+...+.....+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666555555544444443333334444444444444444444444433
No 251
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.93 E-value=7.1 Score=34.70 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 999 AKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 1043 (1530)
Q Consensus 999 le~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~ 1043 (1530)
+..++...+..+-.++.++.+.+.+...|..++..|++++.+++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555556666667777777777777777777766665543
No 252
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.92 E-value=99 Score=40.26 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1027 LQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 1027 Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
+.+.+.++.+....|..|..+++
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444333
No 253
>PRK06547 hypothetical protein; Provisional
Probab=87.88 E-value=0.66 Score=50.43 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.9
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 145 NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..+...-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677889999999999999999988764
No 254
>PRK06762 hypothetical protein; Provisional
Probab=87.83 E-value=0.41 Score=51.43 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 255
>PRK12704 phosphodiesterase; Provisional
Probab=87.83 E-value=91 Score=40.11 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHhhC
Q 000421 1405 ELRHIRQAVGFLVIH 1419 (1530)
Q Consensus 1405 ~L~~i~Qa~~lLq~~ 1419 (1530)
.+..|+++++.|...
T Consensus 415 ~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 415 IEAVLVAAADAISAA 429 (520)
T ss_pred HHHHHHHHHHHHhCc
Confidence 455666666655543
No 256
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.82 E-value=0.33 Score=53.43 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=22.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999888663
No 257
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.79 E-value=0.4 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..-||++|-||||||+.+|.+..-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999988754
No 258
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=87.77 E-value=0.84 Score=56.30 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~y 172 (1530)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 34444555556666678999999999999999998888763
No 259
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.77 E-value=0.77 Score=56.12 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=40.2
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 117 ~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.+.|+-....++--|-..+. .++.+... +-+++++++|+.|+|||+.++.+.+.+-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 45677666666643333332 34454444 4689999999999999999999999885
No 260
>PF05729 NACHT: NACHT domain
Probab=87.71 E-value=0.42 Score=50.71 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998887643
No 261
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.60 E-value=58 Score=38.20 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=11.3
Q ss_pred CccchHHHHHHHHhccc
Q 000421 1135 GKPVAACLIYKCLLHWR 1151 (1530)
Q Consensus 1135 ~kp~pA~ilf~cl~~~~ 1151 (1530)
.+.+-|.-+|..+.-|.
T Consensus 308 qRllFAN~~fk~wtGy~ 324 (401)
T PF06785_consen 308 QRLLFANSQFKTWTGYS 324 (401)
T ss_pred hHHHHhHHHHHHHhccC
Confidence 35556777777776665
No 262
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.60 E-value=64 Score=37.78 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1001 QAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 1042 (1530)
Q Consensus 1001 ~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le 1042 (1530)
++..++++..+.+-.++-+....++.+.+++..+...+..++
T Consensus 200 ~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 200 EEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 263
>PRK08118 topology modulation protein; Reviewed
Probab=87.59 E-value=0.4 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
+-|+|.|.+|||||+.+|.|-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988764
No 264
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.58 E-value=17 Score=35.74 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 975 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQR 1033 (1530)
Q Consensus 975 ~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~ 1033 (1530)
+..|+.+++..+....++-++.++++..+..++.......+.+.+++.++.++...++.
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444443
No 265
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.48 E-value=0.29 Score=58.21 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
-++-+-||||||||.|+..||+-|.+-+
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~ 64 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPA 64 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCc
Confidence 4677999999999999999999998643
No 266
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.44 E-value=0.38 Score=47.87 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 267
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.41 E-value=0.42 Score=57.62 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988763
No 268
>PRK11281 hypothetical protein; Provisional
Probab=87.38 E-value=87 Score=43.81 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1028 QDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1028 q~el~~leeki~~Le~E~~~L~qq 1051 (1530)
.+.+..+.+.+.++.++...+.++
T Consensus 284 ~~~N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 284 LEINLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666555543
No 269
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.37 E-value=0.45 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 270
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.33 E-value=0.35 Score=53.21 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998754
No 271
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.32 E-value=0.45 Score=51.63 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla 174 (1530)
++++.|.||.|||++++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 272
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.28 E-value=22 Score=40.46 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1019 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1019 ~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
+++.+....++.+..+.+++..|+.+...++.
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444443
No 273
>PF12846 AAA_10: AAA-like domain
Probab=87.26 E-value=0.44 Score=56.10 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999888765
No 274
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.21 E-value=19 Score=41.48 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000421 1028 QDSVQRLAEK 1037 (1530)
Q Consensus 1028 q~el~~leek 1037 (1530)
..+...++.+
T Consensus 102 e~Ea~~lq~e 111 (246)
T PF00769_consen 102 EEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 275
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.10 E-value=0.54 Score=56.51 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.+.+.+ ..|+|+|++|||||+..+.++.++.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 344444 4599999999999999999988773
No 276
>PLN02939 transferase, transferring glycosyl groups
Probab=87.08 E-value=50 Score=44.94 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 881 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDAN 941 (1530)
Q Consensus 881 a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~ 941 (1530)
..++..+++.+..|++.+.-++.++..-.+. .+---.+.+|.+-|+..+.+|+..+...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455556666666666666666555422210 01111223455555555666655554443
No 277
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.04 E-value=44 Score=43.44 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000421 1029 DSVQRLAEKVSNLESEN 1045 (1530)
Q Consensus 1029 ~el~~leeki~~Le~E~ 1045 (1530)
.|+.+|++-...|+..+
T Consensus 536 aEi~RL~eLtR~LQ~Sm 552 (861)
T PF15254_consen 536 AEIERLRELTRTLQNSM 552 (861)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333333333
No 278
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.02 E-value=0.34 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+.|+|.|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999999986643
No 279
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.98 E-value=0.39 Score=58.19 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=26.6
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
+..+.. .....|+|+|++|||||++.+.+++++.
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344442 2357899999999999999999998874
No 280
>PLN03025 replication factor C subunit; Provisional
Probab=86.95 E-value=0.73 Score=55.27 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=41.3
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 117 ~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.+.|+-....++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567766666665554333 2355666677667899999999999999999998874
No 281
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=86.94 E-value=1.7 Score=53.85 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+|...-.|...+..-.+.|.+.|.|.||+|||+..+.|++..
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344445577777777899999999999999999999988754
No 282
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.92 E-value=52 Score=37.23 Aligned_cols=28 Identities=14% Similarity=0.444 Sum_probs=18.5
Q ss_pred cchhHHHHhh----hcCCCcccchHHHHHHhc
Q 000421 654 GGVLEAIRIS----CAGYPTRRTFYEFVNRFG 681 (1530)
Q Consensus 654 ~gvle~iri~----~~gyp~r~~~~~F~~ry~ 681 (1530)
+|..+.+++. +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 3444444443 446999999999986544
No 283
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.88 E-value=0.35 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.2
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999875
No 284
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.77 E-value=0.39 Score=52.78 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 285
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.74 E-value=0.41 Score=54.87 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~ 178 (1530)
.+..++-+-||||+|||+++|.|++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 35567889999999999999999996654333
No 286
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.71 E-value=0.89 Score=52.02 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555556679999999999999999988887764
No 287
>PF13514 AAA_27: AAA domain
Probab=86.58 E-value=63 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=17.7
Q ss_pred hhHHHHhhhcCCCcccchHHHHHHh
Q 000421 656 VLEAIRISCAGYPTRRTFYEFVNRF 680 (1530)
Q Consensus 656 vle~iri~~~gyp~r~~~~~F~~ry 680 (1530)
++..|+=.-.|||.|-+|. |+.-|
T Consensus 12 ~l~fI~~lLFGfp~r~~~~-f~~p~ 35 (1111)
T PF13514_consen 12 LLAFIRDLLFGFPTRSPYN-FYHPK 35 (1111)
T ss_pred HHHHHHHHhcCCCCCCCcc-cCCCC
Confidence 4567777778999998887 65533
No 288
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.52 E-value=0.36 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
|++.|.||||||+.++.+.+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998873
No 289
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.50 E-value=54 Score=35.77 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 000421 891 KNKLEKRVEELTWRLQ 906 (1530)
Q Consensus 891 ~~~lE~kl~eL~~~l~ 906 (1530)
...+...+..++..+.
T Consensus 15 ~~~lk~~l~k~~~ql~ 30 (177)
T PF13870_consen 15 NITLKHQLAKLEEQLR 30 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 290
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.46 E-value=0.44 Score=57.84 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
...-|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999999864
No 291
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.43 E-value=0.69 Score=50.21 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+...|+|.|-+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999653
No 292
>PF13245 AAA_19: Part of AAA domain
Probab=86.14 E-value=0.82 Score=42.56 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999888888888874
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.11 E-value=0.69 Score=56.44 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.3
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
++.....+.+.+++|+|++|+|||.+++.+++.+..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344677889999999999999999999998754
No 294
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.02 E-value=55 Score=43.21 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQT---ADEAKQAFTVSEAKNGELTKKLKDA 1020 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~---l~ele~~l~el~~~~~el~~el~~l 1020 (1530)
....+|+.||-.|+.++..|+.. .+.++-++..++.+.+-+..++.++
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777666543 3444444444444444444444443
No 295
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.93 E-value=0.53 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~y 172 (1530)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999998888764
No 296
>PRK06315 type III secretion system ATPase; Provisional
Probab=85.86 E-value=1.2 Score=55.27 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
|...+..-++.|.+.|.|+||+|||+..+.|+++.
T Consensus 154 aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 154 CIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 33445556788999999999999999999999866
No 297
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=85.82 E-value=49 Score=39.89 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 876 KLKMAARETGALQEAKNKLEKRVEELTWRLQIEK 909 (1530)
Q Consensus 876 ~lk~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~ 909 (1530)
.+++..+.++.|+ .+|..+.+++++|+.++
T Consensus 243 hv~km~kdle~Lq----~aEqsl~dlQk~Lekar 272 (575)
T KOG4403|consen 243 HVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAR 272 (575)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3444444444444 46677777777777544
No 298
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=85.78 E-value=92 Score=37.75 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000421 872 RELRKLKMAARETGALQEAKNK 893 (1530)
Q Consensus 872 kel~~lk~~a~e~~~l~~~~~~ 893 (1530)
+.+..|+.++.++..+++...+
T Consensus 249 kdle~Lq~aEqsl~dlQk~Lek 270 (575)
T KOG4403|consen 249 KDLEGLQRAEQSLEDLQKRLEK 270 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655433
No 299
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.75 E-value=0.51 Score=57.44 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999875
No 300
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.75 E-value=14 Score=36.22 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 978 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 1047 (1530)
Q Consensus 978 L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~ 1047 (1530)
|-.|..+|+.+..-|++.+-+.+....++......-+..+..++.+++.|.=..+.|...+..|+.|...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666566666666666666666666666677766666653
No 301
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.67 E-value=29 Score=43.59 Aligned_cols=39 Identities=18% Similarity=-0.054 Sum_probs=23.1
Q ss_pred hHHHHHHhhccC----CCCccchhhHHHhchHHHHHHHhhcCC
Q 000421 1358 NVQLFNSLLLRR----ECCSFSNGEFVKAGLAELEQWCHDSTE 1396 (1530)
Q Consensus 1358 na~lfN~Ll~r~----~~cs~s~G~qIr~nls~LE~W~~~~~~ 1396 (1530)
|-.=+|.|.-|- .-..-+.-+-++.-=+++.+|+++.++
T Consensus 686 n~fnpncl~rr~p~de~~~~Psed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 686 NDFNPNCLERRIPQDEVEKYPSEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred hccChhhhhhcCccchhhcCCChhHHHHhhhHHHHHHHHhccH
Confidence 333455555441 122334455667777889999998764
No 302
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.58 E-value=0.61 Score=54.48 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5689999999999999999999887654
No 303
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.55 E-value=0.58 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|+|.|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 304
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.50 E-value=0.55 Score=52.37 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
|-|+|-||||||+-|+.|..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999998775
No 305
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.49 E-value=0.59 Score=50.66 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999999754
No 306
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.48 E-value=0.42 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999999865
No 307
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.44 E-value=0.94 Score=54.04 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=37.7
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 118 EQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 118 ~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
+.|+-....++..|-- +-+..+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4565555555555543 223455555555555699999999999999999988774
No 308
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.31 E-value=1 Score=56.32 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=39.6
Q ss_pred HHHhhcCCcCCC--CcchhhHHHHHHHHHHhcCC-CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 117 MEQYKGAAFGEL--SPHVFAVGDAAYRAMINEGK-SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~l--~PHifaiA~~Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+.|+-..+.++ ..|+.+. .+.+...++ .+++|++|+.|.|||++++.+.++|-.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 346666665555 3555543 444455444 788999999999999999999998865
No 309
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.27 E-value=0.64 Score=48.99 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
++|+|++|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998876
No 310
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.17 E-value=0.64 Score=49.05 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
|.|||.+|||||+-++.+-.++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999998875
No 311
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.07 E-value=1.1 Score=52.65 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+.+--|-|+|.||||||++++.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45677889999999999999988877754
No 312
>PRK12377 putative replication protein; Provisional
Probab=85.02 E-value=1.1 Score=51.45 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
|+++.|..-...... ..++++++|.+|+|||..+..|.+++..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 456655554444332 35799999999999999999999999753
No 313
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.98 E-value=8.4 Score=42.48 Aligned_cols=81 Identities=25% Similarity=0.429 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE----KVSNLESENQV 1047 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~lee----ki~~Le~E~~~ 1047 (1530)
...+..|+.+++.++..+.+++.+++..+....+. .+...+..++.+++.++..|+.+++.+.. .+..++.+...
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~ 146 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555555555555555555544333222 33455777788888888888888776654 67777777777
Q ss_pred HHHHHh
Q 000421 1048 LRQQAL 1053 (1530)
Q Consensus 1048 L~qq~l 1053 (1530)
++..+.
T Consensus 147 ~~~~an 152 (188)
T PF03962_consen 147 AKEAAN 152 (188)
T ss_pred HHHHHH
Confidence 766443
No 314
>PRK06217 hypothetical protein; Validated
Probab=84.94 E-value=0.56 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla 174 (1530)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999988763
No 315
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.70 E-value=80 Score=39.49 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 971 ~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
..++++..+.++..|++.+..+..++.+.+..+..++..-..+.........++..+.-.++.-.+++.+|+.++++...
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777888888888888888777777777777776666666666666666666776777777777777776655443
No 316
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=84.66 E-value=0.29 Score=66.08 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
...+..++.++..|..++.++...+.+....+.++++.+..++.++.+++..+.++.+.+...+.+...|+.++..++++
T Consensus 425 ~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e 504 (859)
T PF01576_consen 425 QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE 504 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666555543
No 317
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.65 E-value=3.2 Score=51.80 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
++...-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 141 ~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 345566777777777899999999999999999988877754
No 318
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.64 E-value=0.61 Score=49.16 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.8
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla 174 (1530)
+|+|.|.+|||||+.+|.+-.++-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988773
No 319
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.60 E-value=1.4 Score=49.91 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999887654
No 320
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.51 E-value=0.56 Score=52.93 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla 174 (1530)
-+++-|.||||||++.|+|-+-+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 467899999999999999887553
No 321
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.46 E-value=1.1 Score=49.70 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=27.2
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
..+...|.|+|.||||||+.++.+...|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4577899999999999999999999988654
No 322
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.38 E-value=1.2e+02 Score=38.36 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 862 QCGWRCRVARRELRKLKMAARET------------GALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEA 929 (1530)
Q Consensus 862 Q~~~R~~~arkel~~lk~~a~e~------------~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~ 929 (1530)
+..-+....+.+..+++.+.... ............+...+..++...+.....-.+....+.+.+...
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQ 180 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHhhCCccccccchhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 930 LHAMQLRVDDANSLVIKERE--------AARKAIKEAPPVIKETPVIIQDT----EKINSLTAEVENLKGLLQSQTQTAD 997 (1530)
Q Consensus 930 le~le~ele~~~~~l~~e~~--------~~~~~~~e~~~~~~e~~~l~~~e----~~~~~L~~e~~~Lk~~i~~l~~~l~ 997 (1530)
+..++.++...+.......+ ........+....+.+....+.. .....++.+...++.++.+++.++.
T Consensus 181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 181 ISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 998 EA------------KQAFTVSEAKNG-ELTKKLKDAEKRVDELQDSVQRLAEKVS 1039 (1530)
Q Consensus 998 el------------e~~l~el~~~~~-el~~el~~le~~i~~Lq~el~~leeki~ 1039 (1530)
++ +.++..+..... ....++.+++.++..++.++...+..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 261 GLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred hccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 323
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.35 E-value=0.53 Score=48.95 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
||+.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887654
No 324
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=84.33 E-value=3 Score=36.11 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=41.9
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEEcC-CEEEEEeCC-CcEEEEecccccCCC
Q 000421 6 NIIVGSHVWVEDPVLAWINGEVMWING-QEVHVNCTN-GKKVVTSVSKVFPED 56 (1530)
Q Consensus 6 ~~~~g~~vw~~~~~~~w~~~~v~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 56 (1530)
.+.+|+.|=++..+..|-.|+|+++.+ +.+.|...| |....++.+++.+.+
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899998887677899999999988 778888866 988888888776653
No 325
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=84.33 E-value=1.1 Score=57.57 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.9
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 144 ~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.....++.|+|.||+|+|||..|+++.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445678999999999999999999998764
No 326
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.30 E-value=1 Score=55.68 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.5
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 142 ~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.......+.+++|+|.+|+|||.+++.+++.+..
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344567789999999999999999999998754
No 327
>PRK13764 ATPase; Provisional
Probab=84.24 E-value=0.81 Score=58.84 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 328
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.21 E-value=62 Score=43.92 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 000421 314 QEQEAIFRV 322 (1530)
Q Consensus 314 ~~~~~i~~i 322 (1530)
.+|.+||.-
T Consensus 107 s~Q~d~Y~~ 115 (1041)
T KOG0243|consen 107 SQQEDLYDQ 115 (1041)
T ss_pred hhHHHHHHH
Confidence 334444443
No 329
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.20 E-value=0.53 Score=59.14 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+.+..=|-||||||||+++..||.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45677799999999999999999998764
No 330
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.20 E-value=1 Score=56.72 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=40.2
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 117 ~~~y~~~~~~~l~--PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
.+.|+-..+.++- +|+-. ..+++. ..+-+|++|++|..|.|||++++.+-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3567666666653 45444 333333 34568999999999999999999999988654
No 331
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.18 E-value=7.8 Score=43.13 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000421 1035 AEKVSNLESENQVLRQQA 1052 (1530)
Q Consensus 1035 eeki~~Le~E~~~L~qq~ 1052 (1530)
..+...|.+|+..|+.+.
T Consensus 192 ~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 332
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.05 E-value=35 Score=41.67 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000421 1029 DSVQRLAEKVSNLESENQV 1047 (1530)
Q Consensus 1029 ~el~~leeki~~Le~E~~~ 1047 (1530)
+.+...+++|+.|++++..
T Consensus 428 ~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444433
No 333
>PLN03188 kinesin-12 family protein; Provisional
Probab=84.00 E-value=1.7e+02 Score=40.79 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=13.8
Q ss_pred ccccCCCCCCccceEEEEEe
Q 000421 204 AKTVRNNNSSRFGKFVEIQF 223 (1530)
Q Consensus 204 AkT~~N~NSSRfgk~~~l~f 223 (1530)
|.|..|..|||-=-++.|..
T Consensus 293 asT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 293 GATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ccCCCCCccCCCceeEEEEE
Confidence 46788999999544555544
No 334
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=1.1e+02 Score=38.30 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1022 KRVDELQDSVQRLAEKVSNLESENQVL 1048 (1530)
Q Consensus 1022 ~~i~~Lq~el~~leeki~~Le~E~~~L 1048 (1530)
.+...+++.+.+|.+.+.++-+..+..
T Consensus 709 ~Q~~~iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 709 YQRKCIQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444433
No 335
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.88 E-value=1e+02 Score=43.06 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTAD 997 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ 997 (1530)
....|+.|...++.+++.++.++.
T Consensus 174 ~~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 174 QLTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555444444443
No 336
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.75 E-value=0.82 Score=47.91 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998654
No 337
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.71 E-value=0.82 Score=52.71 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 779999999999999988887754
No 338
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.70 E-value=1.3 Score=56.19 Aligned_cols=57 Identities=21% Similarity=0.423 Sum_probs=39.4
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHH-HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 118 EQYKGAAFGELSPHVFAVGDAAYRA-MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 118 ~~y~~~~~~~l~PHifaiA~~Ay~~-m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+.|+-..+.++.-|--.+. ..+. +...+-.+++|++|+.|.|||++++.+.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~--~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVK--VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHH--HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4566666666543333222 3333 2345568999999999999999999999988653
No 339
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.57 E-value=0.78 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|+|+|++|+|||+..+.+++++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999988854
No 340
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.46 E-value=1.4e+02 Score=37.95 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=12.3
Q ss_pred HHhhHHHHhhHHHHHHHhhHHHHHH
Q 000421 800 QRSYLTVRSSAMILQTGLRAMVARN 824 (1530)
Q Consensus 800 Rr~y~~~r~a~i~IQs~~Rg~~aRr 824 (1530)
|+.+..++.-+.+.|++.-++..++
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 3344444445555555555554443
No 341
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=83.44 E-value=1 Score=57.22 Aligned_cols=58 Identities=31% Similarity=0.458 Sum_probs=43.6
Q ss_pred HHHHhhcCCcCCCCcchhhHHHH--HHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 116 MMEQYKGAAFGELSPHVFAVGDA--AYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 116 ~~~~y~~~~~~~l~PHifaiA~~--Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+++.|+-....+|..|-=.|.+- ....|.... ..+-.|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 56788888888999887766553 344444443 35677889999999999999988866
No 342
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.41 E-value=10 Score=33.83 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1018 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1018 ~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
.++..+...|+.+..++......|+.||..|++.
T Consensus 28 eELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 28 EELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555666666666553
No 343
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.40 E-value=1.5 Score=56.21 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=42.3
Q ss_pred HHHHhhcCCcCCCCcchhhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 116 MMEQYKGAAFGELSPHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 116 ~~~~y~~~~~~~l~PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
..+.|+-....++--|--.+ ..+..+. ..+-.+++|++|+.|.|||+.|+.+-+.|.+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567766666664443333 3444444 34668999999999999999999999998654
No 344
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.29 E-value=0.96 Score=57.27 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 139 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
.++.|... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444433 334789999999999999998888774
No 345
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.28 E-value=0.71 Score=52.00 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 45678889999999999999999887654
No 346
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.22 E-value=88 Score=35.44 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 000421 971 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR-----------VDELQDSVQRLAEKVS 1039 (1530)
Q Consensus 971 ~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~-----------i~~Lq~el~~leeki~ 1039 (1530)
.+.....|+.+...++..++.++..+.+++.++.+.+.....+..+...++.. .....+.++++++++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~ 176 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVD 176 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 34566677777777777777777788888777777777666555555444432 1223345566666666
Q ss_pred HHHHHHH
Q 000421 1040 NLESENQ 1046 (1530)
Q Consensus 1040 ~Le~E~~ 1046 (1530)
.++.+..
T Consensus 177 ~~ea~ae 183 (219)
T TIGR02977 177 ELEAQAE 183 (219)
T ss_pred HHHHHHH
Confidence 6665433
No 347
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.17 E-value=1.3 Score=55.31 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=33.4
Q ss_pred cchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 130 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.|+... ....+.+...+...+||+.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344332 3556777777888899999999999999999987754
No 348
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.17 E-value=0.83 Score=46.62 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999999876
No 349
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.11 E-value=1.1 Score=58.04 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=39.5
Q ss_pred HHHhhcCCcCCCCcchhhHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 117 MEQYKGAAFGELSPHVFAVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 117 ~~~y~~~~~~~l~PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
.+.|+-..+.++--|=..+ +.+.++.. .+-.+++|++|.+|.|||++++.+.+.|-+.
T Consensus 15 a~KyRP~~f~dliGq~~~v--~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMV--RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3566655555553332222 23444443 4568999999999999999999999988654
No 350
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=83.04 E-value=0.87 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999998765
No 351
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.95 E-value=1.8 Score=56.99 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+-.|+.--...+...+.+.++.|+|.+|.|||.+++++++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 344443332233334555677899999999999999999988643
No 352
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.89 E-value=22 Score=37.77 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 977 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 1035 (1530)
Q Consensus 977 ~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~le 1035 (1530)
.+..++..++..++.++.++++++.++...+.....+..++..++..+....+++.++.
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443333333333333344333333333333333
No 353
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.87 E-value=60 Score=39.32 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000421 893 KLEKRVEELTWRLQI 907 (1530)
Q Consensus 893 ~lE~kl~eL~~~l~~ 907 (1530)
+.+.+++++..++++
T Consensus 10 ~~dqr~~~~~~~laq 24 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQ 24 (459)
T ss_pred hhhhHHHHHHHHHHH
Confidence 344445555444443
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=82.85 E-value=0.76 Score=48.40 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.7
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|+++|.+|||||+.++.+..-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987754
No 355
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.84 E-value=0.86 Score=49.78 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.7
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|+|.|.||||||+-|+.|...+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999874
No 356
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=82.74 E-value=0.94 Score=56.21 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=40.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCC-----ccCHHHHHHhhchHHHhhcccc---ccCCCCCCccceE
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE-----GRTVEQQVLESNPVLEAFGNAK---TVRNNNSSRFGKF 218 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~-----~~~ie~~vl~snpilEaFGNAk---T~~N~NSSRfgk~ 218 (1530)
..+=+|+|+||||+||-..|++|=+ .|.+.+.. -..|-..+++| |-||..| | ..+.+|-|+|
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~----~S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFT--GA~~~r~G~f 231 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQ----ASPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFT--GAITRRIGRF 231 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHh----hCcccCCCceeeecccCCHHHHHH----HhhcccccCcC--CcccccCcce
Confidence 4677899999999999988876644 33332210 11232222222 4499888 6 4458899998
Q ss_pred EE
Q 000421 219 VE 220 (1530)
Q Consensus 219 ~~ 220 (1530)
-.
T Consensus 232 E~ 233 (464)
T COG2204 232 EQ 233 (464)
T ss_pred eE
Confidence 64
No 357
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=82.63 E-value=0.83 Score=49.01 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~ 171 (1530)
...|+|.|+||+|||++|--+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988776
No 358
>PRK04182 cytidylate kinase; Provisional
Probab=82.59 E-value=0.79 Score=49.63 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yl 173 (1530)
-|+|+|.+|||||+.++.+-..|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 359
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.59 E-value=0.76 Score=54.92 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
++.|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999999877654
No 360
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.56 E-value=0.95 Score=49.36 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 361
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.53 E-value=1.1e+02 Score=36.13 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000421 1037 KVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1037 ki~~Le~E~~~L~qq 1051 (1530)
+...+..||.+|+..
T Consensus 262 eek~ireEN~rLqr~ 276 (310)
T PF09755_consen 262 EEKEIREENRRLQRK 276 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666553
No 362
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=82.48 E-value=0.9 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 363
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=82.46 E-value=1.2 Score=39.66 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.9
Q ss_pred EEEecCCCCCCchhhHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~y 172 (1530)
..+|+|++|||||+..-.+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999887665543
No 364
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.38 E-value=1.1e+02 Score=39.78 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1023 RVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1023 ~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
.+..++.+++.+++++.++-.++...|++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 365
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.38 E-value=1.6e+02 Score=37.86 Aligned_cols=16 Identities=13% Similarity=-0.107 Sum_probs=9.7
Q ss_pred HHhHHHHHHHHHHhhC
Q 000421 1404 DELRHIRQAVGFLVIH 1419 (1530)
Q Consensus 1404 ~~L~~i~Qa~~lLq~~ 1419 (1530)
..+..|+++++.|...
T Consensus 408 ~~~a~IV~~AD~lsa~ 423 (514)
T TIGR03319 408 SIEAVLVAAADALSAA 423 (514)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 4566666666666554
No 366
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.35 E-value=0.85 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~ 171 (1530)
---+.+.|.||||||+..|+|+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999999886
No 367
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=82.25 E-value=1.7 Score=46.68 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=29.2
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000421 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~ 178 (1530)
...+.-.|-++|-||||||+.|-.+=+.|-..|-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3456789999999999999999999999987763
No 368
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.23 E-value=1.1e+02 Score=35.82 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000421 1017 LKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 1053 (1530)
Q Consensus 1017 l~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq~l 1053 (1530)
....+.++......-+.+++++..|++||--|+||.-
T Consensus 202 ~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 202 YQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556667888999999999999998743
No 369
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.12 E-value=50 Score=40.14 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1011 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1011 ~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
.+...++.+.+.++..+++.+..++.+......+...|+.
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~ 270 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEE 270 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443
No 370
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.10 E-value=0.93 Score=54.21 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.7
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
...|+|+|.+|||||+.++.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987743
No 371
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.07 E-value=15 Score=40.92 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 979 TAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 1037 (1530)
Q Consensus 979 ~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leek 1037 (1530)
++++++++++...+++++++.+.++..++.....+.++.+++..+.++|.++-++|+++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444445555555555544444443
No 372
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.06 E-value=83 Score=34.33 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFT 1004 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~ 1004 (1530)
.....|+.++..+...+++-..++..++....
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~ 73 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIG 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655555555554443
No 373
>PRK12608 transcription termination factor Rho; Provisional
Probab=82.05 E-value=1.2 Score=53.84 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
-.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 117 ~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 117 DDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred cchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3677888888888889999999999999999999998887754
No 374
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.05 E-value=93 Score=34.90 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000421 926 LQEALHAMQLRVDDAN 941 (1530)
Q Consensus 926 L~~~le~le~ele~~~ 941 (1530)
+...+..++....++.
T Consensus 81 ~~~dL~s~E~sfsdl~ 96 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLH 96 (207)
T ss_pred HHHHHHHHHhhHHHHH
Confidence 3333333333333333
No 375
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.93 E-value=95 Score=40.11 Aligned_cols=8 Identities=0% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000421 1328 SLNNYLKI 1335 (1530)
Q Consensus 1328 ~L~~~~~~ 1335 (1530)
..+++|.+
T Consensus 718 mvdsFHr~ 725 (916)
T KOG0249|consen 718 MVDSFHRT 725 (916)
T ss_pred HHHHHHHH
Confidence 33344333
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.92 E-value=1.2 Score=48.09 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=24.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999888654
No 377
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=81.85 E-value=1.3 Score=44.92 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=23.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 378
>PRK04040 adenylate kinase; Provisional
Probab=81.84 E-value=0.94 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.-|+|+|.+|+|||+.++.+.+.|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999888
No 379
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=81.78 E-value=2.3e+02 Score=39.29 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1012 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1530)
Q Consensus 1012 el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L 1048 (1530)
+....+.+.+.....+...+...++.+..++...+.+
T Consensus 407 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 407 EIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444443
No 380
>PRK15453 phosphoribulokinase; Provisional
Probab=81.72 E-value=1 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.=-|.|+|-||||||+.++.+-+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999988777544
No 381
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.47 E-value=0.99 Score=46.83 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999888877
No 382
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=81.46 E-value=1.6 Score=54.15 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=23.2
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000421 145 NEGKSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 145 ~~~~~QsIiisGeSGaGKTe~~k~i~~y 172 (1530)
.-++.|.+.|.|.||+|||+..+.+.++
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998766553
No 383
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.35 E-value=1.5e+02 Score=36.69 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000421 924 AKLQEALHAMQLRVDDANSL 943 (1530)
Q Consensus 924 ~~L~~~le~le~ele~~~~~ 943 (1530)
+.|+-+++.+....-.++++
T Consensus 414 etLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 414 ETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 33333333333333333333
No 384
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=81.33 E-value=2 Score=56.24 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.6
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 141 ~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
..+.....++.|+|.||+|+|||+.++.+.+....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567899999999999999999999887543
No 385
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=81.28 E-value=1.7e+02 Score=41.18 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 874 LRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLR----------TDLEEAKSQEIAKLQEALHAMQLRVDDANSL 943 (1530)
Q Consensus 874 l~~lk~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~----------~~lee~~~~E~~~L~~~le~le~ele~~~~~ 943 (1530)
+..+..........+.....++.++..++..+....... .............++..+..+..++..+...
T Consensus 667 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 746 (1047)
T PRK10246 667 LATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQR 746 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhCC-ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q 000421 944 VIKEREAARKAIKEAP-PVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTV----------SEAKNGE 1012 (1530)
Q Consensus 944 l~~e~~~~~~~~~e~~-~~~~e~~~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~e----------l~~~~~e 1012 (1530)
+..........+.+.. ...+......-....+..++.++..+...+......+.+.+..+.. .....+.
T Consensus 747 ~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 826 (1047)
T PRK10246 747 LQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQ 826 (1047)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1013 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1013 l~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
+...+..++..+..+...+..+...+..++.-...+..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 864 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQA 864 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 386
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.28 E-value=1.9 Score=53.40 Aligned_cols=56 Identities=14% Similarity=0.346 Sum_probs=40.7
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 118 EQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 118 ~~y~~~~~~~l~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+.|+-..+.++--|-.++ ..++.+++. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555555555444443 256676665 45789999999999999999999998864
No 387
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=81.23 E-value=0.94 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred CeEEEecCCCCCCchhhHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLM 170 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~ 170 (1530)
.+-|+|+|.||||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999883
No 388
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=81.01 E-value=1.3 Score=53.79 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=32.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie 188 (1530)
..|+|-+-|+|||||++..+++.|++-.-+|+-.-++..|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 45999999999999999999999999765554333445554
No 389
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.99 E-value=28 Score=36.96 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 978 LTAEVENLKGLLQSQTQTADEAKQA 1002 (1530)
Q Consensus 978 L~~e~~~Lk~~i~~l~~~l~ele~~ 1002 (1530)
|...+..+..+++.+...++.++.+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 390
>PRK07667 uridine kinase; Provisional
Probab=80.96 E-value=1.9 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.1
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
--|-|+|-||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46779999999999999999998865
No 391
>PRK06893 DNA replication initiation factor; Validated
Probab=80.94 E-value=2.2 Score=48.66 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 137 DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
..+.+.+ ....+-++++.|.||+|||..+..+.+.++.-
T Consensus 28 ~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 28 DSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3333343 34566789999999999999999999887653
No 392
>PRK06761 hypothetical protein; Provisional
Probab=80.94 E-value=0.97 Score=52.86 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 393
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=80.94 E-value=2.7 Score=52.27 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.-.+...+..-++.|.+.|.|.||+|||+..+.|....
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 34456667677889999999999999999988888744
No 394
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=80.93 E-value=1.2 Score=49.53 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=29.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHHhhch-----HHHhhccc
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGNA 204 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl~snp-----ilEaFGNA 204 (1530)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999988866543 211 1112345445555432 66677764
No 395
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.89 E-value=48 Score=38.49 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~L 1041 (1530)
.+..+..++...+..+..+..+...++.++..-+.+.+..++++..++.-.=-..++-+.+|+++++|
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666666666666666666666666554444455555555544443
No 396
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.85 E-value=91 Score=37.07 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 1038 (1530)
Q Consensus 976 ~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki 1038 (1530)
..|..|+..|.-+++-|+.+++++++.+..++++..+...++..+....+.++.++..|++.+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777777776666555555555555555555555555444
No 397
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.85 E-value=20 Score=32.79 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 984 NLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 984 ~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
+|+.++..|...++.+..++...+..+..+..+-.....++...-.++.+|.+++..|++|++.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777777777666666666655555555555555556666666666666666555443
No 398
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.80 E-value=2.3e+02 Score=38.66 Aligned_cols=32 Identities=31% Similarity=0.763 Sum_probs=19.6
Q ss_pred Cc-cccccccccccccccCCCCCccccccccccccc
Q 000421 1492 PF-TVDDISKSIQQIEIADIDPPPLIRENSGFTFLL 1526 (1530)
Q Consensus 1492 Pf-~~~~~~~~~~~~~~~~i~~p~~l~~~~~~~~~~ 1526 (1530)
|| .+++|...++..++.-| .+-++ ++.|||+.
T Consensus 1075 PFfvlDEiDAALDntNi~kv--asyIr-~~~~Q~Iv 1107 (1141)
T KOG0018|consen 1075 PFFVLDEIDAALDNTNIGKV--ASYIR-SSNFQFIV 1107 (1141)
T ss_pred CceehhhHHHHhhhccHHHH--HHHHh-cCCceEEE
Confidence 54 55556666666655544 35666 77788874
No 399
>PRK06936 type III secretion system ATPase; Provisional
Probab=80.74 E-value=1.6 Score=53.97 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
++...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 145 ~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 145 PLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 344444555666566789999999999999999988887654
No 400
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.73 E-value=1.2 Score=51.65 Aligned_cols=78 Identities=29% Similarity=0.401 Sum_probs=50.4
Q ss_pred ccCccccccCcceEEecCCcCCCCCCCHHHHHHh--hcCCc--CCCCcchhhHHHHHHHHHHhcCCCeEEEecCCCCCCc
Q 000421 87 ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQY--KGAAF--GELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGK 162 (1530)
Q Consensus 87 ~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y--~~~~~--~~l~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGK 162 (1530)
.-|.=|++.|.-=+-||-|+... -|+-- ++.- +-..+ -.+||-+..++ ...+--|+|+|.+||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~v-lR~Ip~~i~~~e~LglP~i~~~~~---------~~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYALV-LRLIPSKIPTLEELGLPPIVRELA---------ESPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEEE-EeccCccCCCHHHcCCCHHHHHHH---------hCCCceEEEeCCCCCcH
Confidence 45567898888888889887653 11100 0000 00011 13566555544 34567899999999999
Q ss_pred hhhHHHHHHHHHH
Q 000421 163 TETTKMLMRYLAY 175 (1530)
Q Consensus 163 Te~~k~i~~yla~ 175 (1530)
|+|.-.++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999964
No 401
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.72 E-value=0.51 Score=63.00 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=4.4
Q ss_pred HHHHHhcCc
Q 000421 1442 LYRISTMYW 1450 (1530)
Q Consensus 1442 l~kiL~~Y~ 1450 (1530)
-++|-++|.
T Consensus 655 ~~rl~S~ya 663 (722)
T PF05557_consen 655 RVRLTSMYA 663 (722)
T ss_dssp EEEEEETT-
T ss_pred eEEEEeccc
Confidence 345556664
No 402
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=40 Score=34.17 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1011 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1530)
Q Consensus 1011 ~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L 1048 (1530)
.++..++..++.++..|+...+++++++.+|+++....
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666666655443
No 403
>PRK14527 adenylate kinase; Provisional
Probab=80.60 E-value=1.3 Score=48.85 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
+...|+|.|.+|||||+.++.+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999987664
No 404
>PRK08727 hypothetical protein; Validated
Probab=80.52 E-value=2.2 Score=48.76 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.8
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
....+.|+|.|.||+|||..+..+...+..-
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999988887654
No 405
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=80.52 E-value=2.1 Score=53.03 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=41.2
Q ss_pred CCCHHHHHHhhcCCcCCCCcchhhHHHHHHHHHHhcC-----------CCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 111 LYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 111 ly~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+.++..+..|-+...-..++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5567777776554433334444455555555433321 24789999999999999999886654
No 406
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=80.51 E-value=1.2 Score=48.81 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+..-.|+|+|.||||||+.++.+..++..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 407
>PRK09099 type III secretion system ATPase; Provisional
Probab=80.43 E-value=2.2 Score=53.02 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 137 DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
-.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 151 i~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 151 VRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred ceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345556556789999999999999999988777643
No 408
>PHA00729 NTP-binding motif containing protein
Probab=80.40 E-value=2.1 Score=48.28 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.6
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 146 ~~~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
++.-..|+|+|.+|+|||+.|..|.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33446899999999999999999998764
No 409
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.34 E-value=1.1 Score=50.97 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998764
No 410
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.29 E-value=1.2 Score=51.51 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=20.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~y 172 (1530)
-.-|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999998777763
No 411
>PRK08356 hypothetical protein; Provisional
Probab=80.18 E-value=1 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEecCCCCCCchhhHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~ 171 (1530)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999954
No 412
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.16 E-value=27 Score=39.79 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 974 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESE 1044 (1530)
Q Consensus 974 ~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E 1044 (1530)
+.+.|..|....-+++....+++..++..+...+.+.. ..+..+..+.++...|.+.+.++..+
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~-------~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERN-------KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555544444444 44444455555555555555555555
No 413
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=80.13 E-value=3.1 Score=51.46 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.|...+..-++.|.+.|.|.||+|||+..+.+++..
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444445688999999999999999988777643
No 414
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=80.12 E-value=1.2 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999988754
No 415
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.05 E-value=1.5 Score=51.64 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHhc--------CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 132 VFAVGDAAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
++....++...++.. .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555555531 245689999999999999999999999765
No 416
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.04 E-value=1.8e+02 Score=36.86 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 985 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 985 Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
...++.+|..++...+.+......+.+.+..++...+++.+.+.+++......+..|++|+...+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666665555566666666666766777777777777777777777777765554
No 417
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.02 E-value=1.2 Score=53.71 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 356899999999999999999988754
No 418
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.01 E-value=0.95 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999988765
No 419
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.98 E-value=1.4 Score=51.38 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
+..-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999887654
No 420
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.92 E-value=18 Score=39.18 Aligned_cols=63 Identities=19% Similarity=0.421 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 972 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRL 1034 (1530)
Q Consensus 972 e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~--~el~~el~~le~~i~~Lq~el~~l 1034 (1530)
.+++..+..++..|++++..+..++..++.++..+.... +++...+.+++.++..+++.++.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777766666666666555442 333333344444443333333333
No 421
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=79.91 E-value=1.4 Score=46.95 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 422
>PRK04195 replication factor C large subunit; Provisional
Probab=79.88 E-value=1.5 Score=55.73 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHhhcCCcCCCCcchhhHH--HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 117 MEQYKGAAFGELSPHVFAVG--DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 117 ~~~y~~~~~~~l~PHifaiA--~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+..|+-....++--|-=+++ ...............++|+|++|+|||+.++.+.+.+
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44565555555433332222 2222222223337899999999999999999998865
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.84 E-value=1.2 Score=50.32 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887643
No 424
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.82 E-value=2.5 Score=54.11 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.8
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~l~--PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+.|+-..+.++- +|+... ...+... +-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567666666664 444433 3344444 55788999999999999999999998864
No 425
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=79.76 E-value=92 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000421 921 QEIAKLQEALHAMQL 935 (1530)
Q Consensus 921 ~E~~~L~~~le~le~ 935 (1530)
.|...++.+++++..
T Consensus 27 ~E~~~l~~EL~evk~ 41 (159)
T PF05384_consen 27 QEYERLRKELEEVKE 41 (159)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334333333333
No 426
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=79.73 E-value=2 Score=50.66 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999888
No 427
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.71 E-value=1.8 Score=55.79 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=40.6
Q ss_pred HHHhhcCCcCCC--CcchhhHHHHHHHHHHhcCC-CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 117 MEQYKGAAFGEL--SPHVFAVGDAAYRAMINEGK-SNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~l--~PHifaiA~~Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+.|+-..+.++ .+|+-+ .++.+...++ .+++|++|+.|.|||++++.+.++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~----~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKA----ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456776666655 466633 3444445544 899999999999999999999998864
No 428
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=79.70 E-value=3 Score=43.85 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 46678999999999999999999998864
No 429
>PRK14974 cell division protein FtsY; Provisional
Probab=79.67 E-value=2.5 Score=50.87 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887654
No 430
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=79.57 E-value=2.9 Score=49.01 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHh---------cCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 132 VFAVGDAAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45555566555432 23468999999999999999999988887654
No 431
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=79.55 E-value=2.2 Score=51.80 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 136 GDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 136 A~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
|...+..+.+.+ -+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 455566665554 5899999999999999999999998865
No 432
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.50 E-value=15 Score=42.40 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1007 EAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1007 ~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
..+.+++.++..++|+++..+..++..|+.++..|+.+|-+|-.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777788888888777754
No 433
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=79.49 E-value=1.3 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888887643
No 434
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=79.44 E-value=1.3 Score=49.73 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887644
No 435
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=79.41 E-value=1.3 Score=49.82 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+.|.|+||||||+..|.|+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999988754
No 436
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.41 E-value=74 Score=40.26 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1022 KRVDELQDSVQRLAEKVSNLESENQVL 1048 (1530)
Q Consensus 1022 ~~i~~Lq~el~~leeki~~Le~E~~~L 1048 (1530)
..++.+....++-+..+..|..-....
T Consensus 281 ~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 281 NALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 333344444444444555554444333
No 437
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=79.40 E-value=1.2 Score=53.57 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999998754
No 438
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.39 E-value=2.5 Score=47.89 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcC--CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 136 GDAAYRAMINEG--KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 136 A~~Ay~~m~~~~--~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
|-.|-..+.... .-..++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 334444554443 23679999999999999988888877654
No 439
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=79.37 E-value=0.77 Score=59.15 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
++.+.|.|.|+||||||+..|.+++++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999987654
No 440
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.33 E-value=35 Score=41.50 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=3.8
Q ss_pred CCCCCchh
Q 000421 638 KPSIFENF 645 (1530)
Q Consensus 638 ~~~~fd~~ 645 (1530)
.|..||.+
T Consensus 62 ~p~e~DDP 69 (359)
T PF10498_consen 62 QPQEYDDP 69 (359)
T ss_pred CCcccCCH
Confidence 34555544
No 441
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=79.27 E-value=1.3 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~ 171 (1530)
...+.+.|.|+||||||+..|.|+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998887765
No 442
>PRK14528 adenylate kinase; Provisional
Probab=79.23 E-value=1.5 Score=48.35 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000421 150 NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999998766
No 443
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.23 E-value=1.3 Score=55.89 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+-.+.=|.||||||||+.+|.|+..+--
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4567779999999999999999987643
No 444
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.22 E-value=1.5 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~y 172 (1530)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999877766653
No 445
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.20 E-value=1.2 Score=53.66 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356889999999999999999888754
No 446
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=79.09 E-value=1.4 Score=50.00 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999998766
No 447
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=79.08 E-value=1.3 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
--.|.|+|.||+|||+..|.+..-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 4579999999999999888776543
No 448
>PF13166 AAA_13: AAA domain
Probab=79.05 E-value=2.4e+02 Score=37.83 Aligned_cols=181 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Q 000421 885 GALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKE 964 (1530)
Q Consensus 885 ~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~~~~e 964 (1530)
.........++.....+................. ...........+++...++.+...+......+..........+.-
T Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~ 358 (712)
T PF13166_consen 280 EEYEKLIEELEKAIKKLEKAIENIIEQLESILSE-NDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIEL 358 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q ss_pred cchhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 965 TPVII---QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTV-----SEAKNGELTKKLKDAEKRVDELQDSVQRLAE 1036 (1530)
Q Consensus 965 ~~~l~---~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~e-----l~~~~~el~~el~~le~~i~~Lq~el~~lee 1036 (1530)
..... .-...+..+..........+..+.++..+++..+.. ..........++..++..+..+..++..++.
T Consensus 359 ~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 438 (712)
T PF13166_consen 359 EEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKE 438 (712)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhhhhhhCc
Q 000421 1037 KVSNLESENQVLRQQALAISPTAKALAARP 1066 (1530)
Q Consensus 1037 ki~~Le~E~~~L~qq~l~~s~~~~~~~~~~ 1066 (1530)
.+..++.+.+.|+.+.....+........+
T Consensus 439 ~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L 468 (712)
T PF13166_consen 439 EIKKIEKEIKELEAQLKNTEPAADRINEEL 468 (712)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
No 449
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.05 E-value=1.2 Score=45.90 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
..+.+.|.|++|||||+..+.+.....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 568899999999999998777665443
No 450
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=79.02 E-value=1.5 Score=48.07 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla 174 (1530)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999998653
No 451
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=79.00 E-value=0.99 Score=59.46 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~~~ 178 (1530)
...|.|-|.|+||||||+.+|+++..+.--.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35789999999999999999999987754433
No 452
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=78.98 E-value=75 Score=39.15 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 817 LRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYK 852 (1530)
Q Consensus 817 ~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~ 852 (1530)
+--+.+-.++.+..++.||.++|..|.-|+..+-++
T Consensus 349 VhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 349 VHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 333444455566667788888999998887766553
No 453
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=78.93 E-value=1.8 Score=41.13 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999874
No 454
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=78.92 E-value=1.4 Score=49.29 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988887644
No 455
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.83 E-value=2.3 Score=56.29 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+...++..++|+.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 557777888888899999999999999999998765
No 456
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.78 E-value=1.3e+02 Score=34.39 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 000421 1030 SVQRLAEKVSNLESE 1044 (1530)
Q Consensus 1030 el~~leeki~~Le~E 1044 (1530)
.++++++++..++..
T Consensus 167 ~fer~e~kiee~ea~ 181 (225)
T COG1842 167 AFERMEEKIEEREAR 181 (225)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555544443
No 457
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.71 E-value=2.7 Score=53.12 Aligned_cols=54 Identities=24% Similarity=0.475 Sum_probs=38.2
Q ss_pred HHhhcCCcCCC--CcchhhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 118 ~~y~~~~~~~l--~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
+.|+-....++ ++|+ ....+.+...+ -.+++|++|+.|.|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45666665555 3555 33455555554 4578999999999999999999887643
No 458
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.65 E-value=1.3 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~ 171 (1530)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988866
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.64 E-value=1.9 Score=51.69 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
++.+.|.+.|.+|||||+++..+..+++.-+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999998654
No 460
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.59 E-value=1.5 Score=49.30 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887644
No 461
>PRK08116 hypothetical protein; Validated
Probab=78.59 E-value=2.8 Score=48.96 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 131 HVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 131 HifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+.++.|..--...... ..+..+++.|.+|+|||..+..|.++|..-
T Consensus 95 ~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 95 KAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555444433322 345679999999999999999999999764
No 462
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.56 E-value=38 Score=42.94 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1014 TKKLKDAEKRVDELQDSVQRLAEKVSNLE 1042 (1530)
Q Consensus 1014 ~~el~~le~~i~~Lq~el~~leeki~~Le 1042 (1530)
+.++..++.++.+-...++.|+.++..++
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 463
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.53 E-value=2.7 Score=53.85 Aligned_cols=55 Identities=25% Similarity=0.468 Sum_probs=39.3
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~l~--PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.+.|+-..+.++- +|+-. ++..+.. .+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~----~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVR----ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHH----HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3566666655553 45544 3444444 356789999999999999999999998854
No 464
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=78.48 E-value=1.6 Score=47.65 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999888877776543
No 465
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=78.45 E-value=3.9 Score=51.01 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
|...-.+...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444555566666789999999999999999988777653
No 466
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=78.44 E-value=1.4 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+-|-||||||||+.++.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999998865
No 467
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.42 E-value=1.4e+02 Score=34.78 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 993 TQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 1049 (1530)
Q Consensus 993 ~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~ 1049 (1530)
...+.+...++.+++....+......+++.-...-+..+++++++...+++......
T Consensus 184 ~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~ 240 (264)
T PF06008_consen 184 RDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVS 240 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544445555555444455555555555555555544443
No 468
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=78.35 E-value=1.5 Score=49.43 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357889999999999999998887654
No 469
>PRK13768 GTPase; Provisional
Probab=78.34 E-value=1.7 Score=50.26 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
.|+|+|.+|+|||+.+..+..+++..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998654
No 470
>PRK10646 ADP-binding protein; Provisional
Probab=78.30 E-value=3.3 Score=43.92 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999999977
No 471
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.29 E-value=2 Score=54.67 Aligned_cols=56 Identities=27% Similarity=0.311 Sum_probs=37.3
Q ss_pred HHhhcCCcCCCC--cchhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 118 EQYKGAAFGELS--PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 118 ~~y~~~~~~~l~--PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+.|+-..+.++- .|+.+.-..+. ...+-.++++++|++|+|||+.++.+.+.+-..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 355555555443 44433333332 234557889999999999999999999988653
No 472
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.22 E-value=26 Score=40.61 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 976 NSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDS 1030 (1530)
Q Consensus 976 ~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~e 1030 (1530)
+.+..+...+..++..++++++.++..+..+++....+.+++.+++.+++..+..
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443443333344444444333333
No 473
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.16 E-value=1.5 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLA 174 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla 174 (1530)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988764
No 474
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=78.13 E-value=2.6 Score=46.26 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 140 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 140 y~~m~~~-~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
++++... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4445544 45799999999999999999999998864
No 475
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=78.13 E-value=1.5 Score=48.87 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 148 ~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
..+.+.|.|++|||||+..+.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56889999999999999988887643
No 476
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.10 E-value=1.9 Score=46.14 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000421 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1530)
Q Consensus 150 QsIiisGeSGaGKTe~~k~i~~yla~~~ 177 (1530)
..|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 477
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=78.08 E-value=5.2 Score=49.76 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
++...-+|-..+..-++.|-+.|.|.||+|||+..+.++++.
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 344455555666667889999999999999999988888643
No 478
>PRK00698 tmk thymidylate kinase; Validated
Probab=78.07 E-value=2 Score=47.63 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 149 ~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988653
No 479
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=78.04 E-value=1.9 Score=55.72 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
=|.++-.++|.. +.++.-.|+|+|-||||||+.++.+...|-.
T Consensus 376 eV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 376 EVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 344444444432 4456669999999999999999999998865
No 480
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.01 E-value=2.9 Score=53.36 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=41.2
Q ss_pred HHHhhcCCcCCCC--cchhhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000421 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1530)
Q Consensus 117 ~~~y~~~~~~~l~--PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~i~~yla~ 175 (1530)
.++|+-..+.++- +||-. +.+++. ..+-++++|++|..|.|||++++.+.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677777766663 45543 444444 4467899999999999999999999998864
No 481
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=77.96 E-value=1.6 Score=51.44 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000421 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1530)
Q Consensus 151 sIiisGeSGaGKTe~~k~i~~yla~~~~ 178 (1530)
.|++.|++|+|||..|+.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987654
No 482
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.93 E-value=1.6 Score=47.57 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988887543
No 483
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.92 E-value=1.5 Score=50.13 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
...+.+.|.|++|||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999988887643
No 484
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.91 E-value=41 Score=30.26 Aligned_cols=10 Identities=50% Similarity=0.697 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000421 978 LTAEVENLKG 987 (1530)
Q Consensus 978 L~~e~~~Lk~ 987 (1530)
|+.|++.|++
T Consensus 23 LQmEieELKE 32 (79)
T COG3074 23 LQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 485
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.89 E-value=3.6 Score=49.48 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHHHh-----cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000421 131 HVFAVGDAAYRAMIN-----EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1530)
Q Consensus 131 HifaiA~~Ay~~m~~-----~~~~QsIiisGeSGaGKTe~~k~i~~yla~~ 176 (1530)
........|+..+.. ......+++.|.+|+|||..+..|.+.+..-
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 444455555543321 1244889999999999999999999988753
No 486
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.79 E-value=1.3 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 147 ~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.|.+.|.|+||||||+..|.++..+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
No 487
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=77.77 E-value=5.3 Score=33.23 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred CcEEEEeCCC-CCeEeEEEEEEc-CCEEEEEeCC-CcEEEEecccccC
Q 000421 10 GSHVWVEDPV-LAWINGEVMWIN-GQEVHVNCTN-GKKVVTSVSKVFP 54 (1530)
Q Consensus 10 g~~vw~~~~~-~~w~~~~v~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 54 (1530)
|+.|-++.++ ..|-+|+|+++. ++.+.|...| |....++.+++.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHcCC
No 488
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.76 E-value=2.2 Score=46.80 Aligned_cols=48 Identities=31% Similarity=0.323 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCccCHHHHHH--hhchHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVL--ESNPVLE 199 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yla~~~~~~~~~~~~ie~~vl--~snpilE 199 (1530)
||++|-.|||||+-+|.+.+-|-.-.-.....+...-.-++ +|-||++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~k 53 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILK 53 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHH
No 489
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.75 E-value=36 Score=31.67 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 982 VENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 1048 (1530)
Q Consensus 982 ~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L 1048 (1530)
.++|+..++..-+.+.-++.++.+++..+..+..+...+......|..+.+.++..-..-++....|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.65 E-value=2.6e+02 Score=38.42 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 877 LKMAARETGALQEAKNKLEKRV-----EELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAA 951 (1530)
Q Consensus 877 lk~~a~e~~~l~~~~~~lE~kl-----~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~ 951 (1530)
+|..-.++++|+......+++- ++--...+.+.+...+.-+++..+...+++.+.+++....-.........+++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHhhCCccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 952 RKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSV 1031 (1530)
Q Consensus 952 ~~~~~e~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el 1031 (1530)
.+ -+..+..-..+...++.++..+...+.+.+..+...+..-..+......++..++..++.+
T Consensus 486 ~~-----------------~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~ 548 (1041)
T KOG0243|consen 486 EK-----------------LKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDL 548 (1041)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 000421 1032 QRLAEKVSNLES 1043 (1530)
Q Consensus 1032 ~~leeki~~Le~ 1043 (1530)
..+-+++..+..
T Consensus 549 s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 549 SSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHhhhhhc
No 491
>PLN02796 D-glycerate 3-kinase
Probab=77.64 E-value=1.5 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|-|+|.||||||+.++.|...|
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
No 492
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.62 E-value=2.2e+02 Score=36.68 Aligned_cols=307 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhchhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHhhHHH
Q 000421 733 EVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMI 812 (1530)
Q Consensus 733 ~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~IQa~~Rg~laR~~~~~lRr~~AAi~IQ~~~Rg~~~Rr~y~~~r~a~i~ 812 (1530)
.++..+-..+|..+|- |.|+..=|..+|.-++-+.....-.+.--++-|-.--|-.--+.-...-.-+.+
T Consensus 409 QRva~lEkKvqa~~kE----------RDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkK 478 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKE----------RDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKK 478 (961)
T ss_pred HHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHhh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 813 LQTGLR------------------------AMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCR 868 (1530)
Q Consensus 813 IQs~~R------------------------g~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~~~R~~ 868 (1530)
+-+..| ..+.-++--.+....+..+.|+.... ....|-+.+.-+..+|...+..
T Consensus 479 LRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r--q~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR--QKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 000421 869 VARRELRKL---KMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQL---------- 935 (1530)
Q Consensus 869 ~arkel~~l---k~~a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~---------- 935 (1530)
.+--.-.+- +.-+-+-..+.+....+-.++.+|++.|...+...+--+...+.|+.+|+.+++..+.
T Consensus 557 qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~ 636 (961)
T KOG4673|consen 557 QATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVP 636 (961)
T ss_pred HHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhhCCccccccchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 936 --------RVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKIN-SLTAEVENLKGLLQSQTQTADEAKQAFTVS 1006 (1530)
Q Consensus 936 --------ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~~l~~~e~~~~-~L~~e~~~Lk~~i~~l~~~l~ele~~l~el 1006 (1530)
+++.+++-+.+.-...++....+...+.+-+++..-....+ .-..|.-.++-.+-+..-.+.-+..+...+
T Consensus 637 ~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l 716 (961)
T KOG4673|consen 637 ETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQL 716 (961)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1007 EAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 1051 (1530)
Q Consensus 1007 ~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~~L~qq 1051 (1530)
.+..++-..+..+.+++...++++++.+++.+..|+.+-.+++..
T Consensus 717 ~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 717 SKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.57 E-value=1.5 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|-|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
No 494
>PRK10436 hypothetical protein; Provisional
Probab=77.55 E-value=1.5 Score=55.08 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000421 152 ILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 152 IiisGeSGaGKTe~~k~i~~yl 173 (1530)
|+|+|.+|||||++...+++++
T Consensus 221 iLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 221 ILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred EEEECCCCCChHHHHHHHHHhh
No 495
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=77.54 E-value=1.4e+02 Score=37.73 Aligned_cols=164 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000421 881 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPP 960 (1530)
Q Consensus 881 a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~ 960 (1530)
.+.+..+.+...+--....++..--+.+.....+..+...++....+.++...+.+.+..+..+.+.+..++...++...
T Consensus 180 ~~vv~~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~ 259 (489)
T PF05262_consen 180 EKVVQELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKK 259 (489)
T ss_pred HHHHHHHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred cccccchhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 961 VIKETPVIIQDTEK--INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 1038 (1530)
Q Consensus 961 ~~~e~~~l~~~e~~--~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki 1038 (1530)
.-+........+++ -++.+.|.++.+.++....++....++.. .+....+...+-..++++..+.+.+..+..+..
T Consensus 260 ~pe~ae~~~~~edek~aE~~kkE~EKaq~E~~k~~Eea~kake~~--aee~k~Eak~~~~~ae~K~~Eaq~er~~iAkD~ 337 (489)
T PF05262_consen 260 LPEPAEAQQKKEDEKLAEEEKKEAEKAQEEAKKKQEEAKKAKEQA--AEELKQEAKSQEKEAEKKEEEAQQERKEIAKDQ 337 (489)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 000421 1039 SNLESENQ 1046 (1530)
Q Consensus 1039 ~~Le~E~~ 1046 (1530)
+.+-.+.+
T Consensus 338 qk~~~e~~ 345 (489)
T PF05262_consen 338 QKLIEEQK 345 (489)
T ss_pred HHHHhhhh
No 496
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.49 E-value=2.5e+02 Score=37.09 Aligned_cols=238 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHH-HH
Q 000421 811 MILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWR-CRVARRELR-KLKMAARETG-AL 887 (1530)
Q Consensus 811 i~IQs~~Rg~~aRr~~~~~r~~~aA~~IQ~~~R~~~~r~~~~~l~~a~i~iQ~~~R-~~~arkel~-~lk~~a~e~~-~l 887 (1530)
..+|..+.-...+..-..-+...++..++-..| ...+.....+.....-+...+ ..+-...+. .++...-++. ..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka 398 (698)
T KOG0978|consen 321 DKIQDLISQEAELSKKLRSKLLESAKKLKILLR--EKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKA 398 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccc
Q 000421 888 QEAKNKLEKRVEELTWRLQIEKR-LRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETP 966 (1530)
Q Consensus 888 ~~~~~~lE~kl~eL~~~l~~e~~-~~~~lee~~~~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~~e~~~~~~e~~ 966 (1530)
+.....+..++..+...-..+.+ ...++-..+..+...+.+.++........+..+....-.+-....++......+
T Consensus 399 ~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~e-- 476 (698)
T KOG0978|consen 399 RAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQE-- 476 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 967 VIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 1046 (1530)
Q Consensus 967 ~l~~~e~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~Le~E~~ 1046 (1530)
+.+.++.+-.|-.+.....+....+.++...++..+..+......+...+..++.+...++.....+..++..+...+.
T Consensus 477 -l~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le 555 (698)
T KOG0978|consen 477 -LREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLE 555 (698)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 000421 1047 VLRQQAL 1053 (1530)
Q Consensus 1047 ~L~qq~l 1053 (1530)
.++..+.
T Consensus 556 ~~kk~~~ 562 (698)
T KOG0978|consen 556 MLKKKAQ 562 (698)
T ss_pred HHHHHHH
No 497
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.48 E-value=2.7 Score=52.32 Aligned_cols=61 Identities=28% Similarity=0.345 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCCcCCCCcchhhHHHHHHHHH-----HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000421 113 DTHMMEQYKGAAFGELSPHVFAVGDAAYRAM-----INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 113 ~~~~~~~y~~~~~~~l~PHifaiA~~Ay~~m-----~~~~~~QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
.+.++..|+-....+|.-|-=.|++-=-.-- ...-+++-.+|+|.||+|||++.|.+-.=|
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
No 498
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=77.45 E-value=2e+02 Score=36.09 Aligned_cols=170 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 881 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKS-----QEIAKLQEALHAMQLRVDDANSLVIKEREAARKAI 955 (1530)
Q Consensus 881 a~e~~~l~~~~~~lE~kl~eL~~~l~~e~~~~~~lee~~~-----~E~~~L~~~le~le~ele~~~~~l~~e~~~~~~~~ 955 (1530)
............-++.++.+++.++...+....+..++.. +...-...++.+++.++...+.+............
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 242 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSS 242 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred h-hCCccccccchhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000421 956 K-EAPPVIKETPVIIQDTEKINSLTAEVENLKG-------LLQSQTQTADEAKQAFTV-SEAKNGELTKKLKDAEKRVDE 1026 (1530)
Q Consensus 956 ~-e~~~~~~e~~~l~~~e~~~~~L~~e~~~Lk~-------~i~~l~~~l~ele~~l~e-l~~~~~el~~el~~le~~i~~ 1026 (1530)
. ..-......+.+.....++.+++.+...+.. .+..++.++++++..+.+ ..........+...+..+...
T Consensus 243 ~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 322 (444)
T TIGR03017 243 GKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAE 322 (444)
T ss_pred CcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 1027 LQDSVQRLAEKVSNLESENQVLRQ 1050 (1530)
Q Consensus 1027 Lq~el~~leeki~~Le~E~~~L~q 1050 (1530)
+...++.++.++..+......+..
T Consensus 323 l~~~l~~~~~~~~~l~~~~~~~~~ 346 (444)
T TIGR03017 323 LREALENQKAKVLELNRQRDEMSV 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.39 E-value=42 Score=31.29 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000421 973 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 1041 (1530)
Q Consensus 973 ~~~~~L~~e~~~Lk~~i~~l~~~l~ele~~l~el~~~~~el~~el~~le~~i~~Lq~el~~leeki~~L 1041 (1530)
+-++.|+.++...-+.|.-|.-++++++++...+..+.+.+...-.+++.+...|+++-..-++++..|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.38 E-value=3.2 Score=52.24 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHhhcCCcCCCCcchhhHHHHHHHHHHhcCCC-eEEEecCCCCCCchhhHHHHHHHH
Q 000421 118 EQYKGAAFGELSPHVFAVGDAAYRAMINEGKS-NSILVSGESGAGKTETTKMLMRYL 173 (1530)
Q Consensus 118 ~~y~~~~~~~l~PHifaiA~~Ay~~m~~~~~~-QsIiisGeSGaGKTe~~k~i~~yl 173 (1530)
+.|+-..+.++--|--.+. ..+.+...++- +++|++|+.|.|||+.++.+.+++
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Done!