Query 000423
Match_columns 1527
No_of_seqs 566 out of 2307
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 5E-243 1E-247 2255.6 104.4 1366 3-1470 2-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-207 4E-212 1957.4 77.4 769 4-777 27-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 3E-192 5E-197 1799.5 64.9 674 62-735 1-674 (674)
4 KOG0160 Myosin class V heavy c 100.0 3E-190 7E-195 1751.6 67.4 752 60-824 6-758 (862)
5 KOG0161 Myosin class II heavy 100.0 1E-186 3E-191 1829.3 94.1 746 5-757 25-794 (1930)
6 cd01380 MYSc_type_V Myosin mot 100.0 6E-188 1E-192 1770.1 62.2 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 2E-187 4E-192 1758.1 61.7 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 3E-187 7E-192 1763.6 63.8 667 60-731 3-693 (693)
9 KOG0164 Myosin class I heavy c 100.0 4E-186 9E-191 1612.7 58.6 728 61-805 7-755 (1001)
10 cd01378 MYSc_type_I Myosin mot 100.0 1E-185 2E-190 1745.6 62.0 662 63-731 1-674 (674)
11 cd01383 MYSc_type_VIII Myosin 100.0 1E-185 3E-190 1739.6 61.6 656 61-731 7-677 (677)
12 cd01387 MYSc_type_XV Myosin mo 100.0 7E-185 2E-189 1735.5 62.5 661 62-731 1-677 (677)
13 cd01385 MYSc_type_IX Myosin mo 100.0 3E-184 7E-189 1733.2 65.0 664 61-732 6-689 (692)
14 cd01382 MYSc_type_VI Myosin mo 100.0 3E-184 7E-189 1739.2 64.1 664 60-730 2-715 (717)
15 KOG0163 Myosin class VI heavy 100.0 2E-181 4E-186 1570.8 76.6 790 8-814 2-843 (1259)
16 cd01379 MYSc_type_III Myosin m 100.0 9E-182 2E-186 1698.4 62.9 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 3E-180 7E-185 1704.2 63.8 667 61-732 5-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 3E-180 6E-185 1561.5 52.6 695 60-765 16-725 (1106)
19 cd01386 MYSc_type_XVIII Myosin 100.0 2E-178 4E-183 1687.8 61.2 660 64-731 2-767 (767)
20 cd00124 MYSc Myosin motor doma 100.0 3E-178 6E-183 1691.5 63.3 662 63-731 1-679 (679)
21 PF00063 Myosin_head: Myosin h 100.0 7E-170 1E-174 1634.6 54.8 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 5E-117 1E-121 1124.1 29.6 753 60-827 59-1009(1062)
23 PF01843 DIL: DIL domain; Int 99.9 2.7E-27 5.8E-32 234.6 5.6 105 1345-1452 1-105 (105)
24 KOG1892 Actin filament-binding 99.9 6.9E-23 1.5E-27 246.7 19.3 263 1155-1494 595-865 (1629)
25 KOG0161 Myosin class II heavy 99.4 1.1E-09 2.5E-14 149.3 42.9 414 353-807 324-822 (1930)
26 cd01363 Motor_domain Myosin an 98.7 2.1E-08 4.5E-13 110.2 7.5 87 132-230 8-98 (186)
27 KOG0520 Uncharacterized conser 98.4 3.8E-07 8.2E-12 116.8 7.9 127 735-878 809-937 (975)
28 KOG0160 Myosin class V heavy c 98.4 2.5E-06 5.4E-11 109.6 13.7 87 783-872 672-758 (862)
29 COG5022 Myosin heavy chain [Cy 98.3 0.00073 1.6E-08 90.0 33.2 129 748-879 734-866 (1463)
30 PF02736 Myosin_N: Myosin N-te 98.1 6.8E-06 1.5E-10 67.5 6.7 41 10-50 1-41 (42)
31 KOG0520 Uncharacterized conser 98.0 1.3E-05 2.8E-10 103.3 8.2 136 736-871 756-905 (975)
32 KOG0971 Microtubule-associated 97.4 0.16 3.4E-06 65.0 30.6 28 1315-1342 897-924 (1243)
33 KOG1029 Endocytic adaptor prot 97.3 0.029 6.2E-07 70.2 23.1 35 901-935 373-407 (1118)
34 KOG1029 Endocytic adaptor prot 97.2 1 2.2E-05 57.1 34.6 24 1365-1388 1008-1031(1118)
35 TIGR02169 SMC_prok_A chromosom 97.2 2.6 5.6E-05 59.6 46.9 6 521-526 39-44 (1164)
36 PF09726 Macoilin: Transmembra 97.1 0.088 1.9E-06 68.8 26.2 143 881-1029 459-608 (697)
37 KOG0996 Structural maintenance 97.0 2.5 5.5E-05 56.5 43.4 10 721-730 250-259 (1293)
38 KOG0971 Microtubule-associated 97.0 0.15 3.2E-06 65.3 25.2 30 872-904 283-312 (1243)
39 KOG4229 Myosin VII, myosin IXB 97.0 0.00022 4.8E-09 94.5 1.1 266 604-871 643-1005(1062)
40 KOG0250 DNA repair protein RAD 97.0 0.82 1.8E-05 60.8 32.7 43 1327-1369 915-957 (1074)
41 TIGR02169 SMC_prok_A chromosom 96.9 4 8.7E-05 57.6 44.6 8 434-441 6-13 (1164)
42 KOG0933 Structural maintenance 96.8 0.5 1.1E-05 61.7 28.2 21 154-178 30-50 (1174)
43 PF09726 Macoilin: Transmembra 96.7 0.42 9.2E-06 62.6 27.6 67 982-1048 589-655 (697)
44 PF00612 IQ: IQ calmodulin-bin 96.7 0.0024 5.2E-08 44.4 3.6 17 761-777 3-19 (21)
45 PRK11637 AmiB activator; Provi 96.6 0.48 1.1E-05 59.2 26.5 22 1020-1041 231-252 (428)
46 PF12718 Tropomyosin_1: Tropom 96.6 0.31 6.6E-06 51.5 20.5 128 887-1039 12-139 (143)
47 PRK11637 AmiB activator; Provi 96.6 0.42 9E-06 59.8 25.4 32 1017-1048 221-252 (428)
48 COG1196 Smc Chromosome segrega 96.5 8 0.00017 54.7 45.4 17 1376-1392 946-962 (1163)
49 KOG0163 Myosin class VI heavy 96.5 1.1 2.3E-05 56.7 26.5 54 793-854 782-835 (1259)
50 KOG0933 Structural maintenance 96.4 1.9 4.1E-05 56.7 29.5 24 884-907 736-759 (1174)
51 KOG0164 Myosin class I heavy c 96.4 0.023 4.9E-07 70.7 12.4 58 786-853 698-755 (1001)
52 KOG4643 Uncharacterized coiled 96.4 5.7 0.00012 52.5 36.9 48 886-933 405-455 (1195)
53 PF00612 IQ: IQ calmodulin-bin 96.4 0.0039 8.5E-08 43.4 3.4 21 736-756 1-21 (21)
54 PRK04863 mukB cell division pr 96.4 5.5 0.00012 56.8 36.4 37 1012-1048 439-475 (1486)
55 KOG2128 Ras GTPase-activating 96.2 0.12 2.5E-06 69.6 17.5 90 766-855 542-645 (1401)
56 TIGR02168 SMC_prok_B chromosom 96.1 7.5 0.00016 54.9 36.6 10 698-707 124-133 (1179)
57 PF12128 DUF3584: Protein of u 96.1 13 0.00028 52.9 41.5 35 740-774 226-260 (1201)
58 KOG0977 Nuclear envelope prote 96.0 7.3 0.00016 49.4 31.0 31 1020-1050 340-370 (546)
59 KOG0925 mRNA splicing factor A 95.9 0.0071 1.5E-07 72.5 4.2 57 102-167 24-80 (699)
60 KOG2128 Ras GTPase-activating 95.9 0.23 4.9E-06 67.0 18.1 119 761-879 509-646 (1401)
61 PF00038 Filament: Intermediat 95.8 6.4 0.00014 47.1 31.2 38 880-917 66-103 (312)
62 PF12128 DUF3584: Protein of u 95.7 17 0.00036 51.7 43.0 15 1455-1469 1066-1081(1201)
63 KOG1853 LIS1-interacting prote 95.7 2.7 6E-05 46.9 22.5 26 977-1002 95-120 (333)
64 PRK02224 chromosome segregatio 95.6 14 0.0003 50.9 34.8 10 717-726 133-142 (880)
65 PF15070 GOLGA2L5: Putative go 95.5 1.5 3.3E-05 56.8 23.2 75 970-1044 150-231 (617)
66 PF07888 CALCOCO1: Calcium bin 95.5 2.2 4.8E-05 53.8 23.7 169 875-1050 143-311 (546)
67 KOG2129 Uncharacterized conser 95.5 8.1 0.00018 46.2 27.7 32 971-1002 251-282 (552)
68 KOG0250 DNA repair protein RAD 95.5 15 0.00034 49.4 37.5 30 738-768 179-212 (1074)
69 KOG0995 Centromere-associated 95.4 7.7 0.00017 48.7 27.4 18 922-939 347-364 (581)
70 PRK03918 chromosome segregatio 95.3 5.2 0.00011 54.9 29.5 19 151-169 25-43 (880)
71 PTZ00014 myosin-A; Provisional 95.3 0.036 7.7E-07 73.6 8.0 18 352-369 332-349 (821)
72 PF08317 Spc7: Spc7 kinetochor 95.3 4.6 9.9E-05 48.7 25.2 58 971-1028 207-264 (325)
73 COG4942 Membrane-bound metallo 95.3 5.2 0.00011 48.9 25.2 35 1012-1046 214-248 (420)
74 PRK02224 chromosome segregatio 95.1 21 0.00046 49.1 40.9 18 1323-1340 721-738 (880)
75 PHA02562 46 endonuclease subun 95.1 2.9 6.2E-05 54.2 24.8 27 972-998 298-324 (562)
76 KOG4674 Uncharacterized conser 95.1 27 0.00058 50.0 37.5 69 886-954 763-831 (1822)
77 PF15066 CAGE1: Cancer-associa 95.0 1.1 2.5E-05 54.1 18.2 104 883-998 332-436 (527)
78 KOG0996 Structural maintenance 95.0 21 0.00046 48.4 40.1 45 1401-1448 1170-1217(1293)
79 PRK09039 hypothetical protein; 95.0 2.7 5.8E-05 51.0 22.0 16 893-908 57-72 (343)
80 COG1579 Zn-ribbon protein, pos 94.9 5.1 0.00011 45.7 22.5 37 972-1008 88-124 (239)
81 PRK03918 chromosome segregatio 94.9 5.5 0.00012 54.6 27.9 8 717-724 130-137 (880)
82 KOG4643 Uncharacterized coiled 94.9 20 0.00044 47.7 30.4 51 885-939 173-223 (1195)
83 PHA02562 46 endonuclease subun 94.8 5.9 0.00013 51.4 26.5 20 971-990 304-323 (562)
84 KOG4674 Uncharacterized conser 94.7 33 0.00071 49.2 33.3 64 843-906 655-720 (1822)
85 smart00015 IQ Short calmodulin 94.7 0.031 6.7E-07 41.1 2.9 19 760-778 4-22 (26)
86 PF14662 CCDC155: Coiled-coil 94.5 4.5 9.7E-05 44.2 19.8 75 977-1051 64-138 (193)
87 COG1196 Smc Chromosome segrega 94.5 34 0.00073 48.6 45.3 30 1013-1042 458-487 (1163)
88 PF00261 Tropomyosin: Tropomyo 94.4 0.97 2.1E-05 51.9 15.9 29 973-1001 92-120 (237)
89 PF00261 Tropomyosin: Tropomyo 94.2 9.7 0.00021 43.8 23.3 20 1020-1039 195-214 (237)
90 COG3883 Uncharacterized protei 94.0 5.4 0.00012 46.0 20.2 72 970-1041 145-216 (265)
91 smart00015 IQ Short calmodulin 94.0 0.059 1.3E-06 39.6 3.1 22 735-756 2-23 (26)
92 PF13207 AAA_17: AAA domain; P 93.9 0.04 8.7E-07 55.8 3.0 23 151-173 1-23 (121)
93 KOG0980 Actin-binding protein 93.8 12 0.00027 49.0 24.6 35 1404-1443 850-887 (980)
94 KOG0980 Actin-binding protein 93.6 33 0.00072 45.3 29.3 12 1430-1441 933-944 (980)
95 KOG0946 ER-Golgi vesicle-tethe 93.4 26 0.00057 45.7 26.3 29 553-581 389-417 (970)
96 TIGR02168 SMC_prok_B chromosom 93.4 51 0.0011 46.7 49.4 9 673-681 124-132 (1179)
97 PF05667 DUF812: Protein of un 93.4 3.5 7.6E-05 53.3 19.4 40 1011-1050 443-482 (594)
98 KOG4360 Uncharacterized coiled 93.3 1.9 4.1E-05 52.8 15.7 77 973-1049 226-302 (596)
99 KOG1853 LIS1-interacting prote 93.2 18 0.00039 40.8 22.9 25 977-1001 102-126 (333)
100 smart00787 Spc7 Spc7 kinetocho 93.2 11 0.00023 45.2 21.8 9 670-678 9-17 (312)
101 KOG0999 Microtubule-associated 93.1 13 0.00028 46.1 22.1 39 1013-1051 168-216 (772)
102 KOG1103 Predicted coiled-coil 93.1 19 0.0004 42.2 22.3 37 1013-1049 257-293 (561)
103 PF07111 HCR: Alpha helical co 93.1 30 0.00066 44.7 26.1 44 880-923 99-142 (739)
104 KOG0612 Rho-associated, coiled 93.0 40 0.00088 46.1 28.1 72 977-1048 620-693 (1317)
105 KOG0977 Nuclear envelope prote 93.0 14 0.0003 47.0 23.1 24 921-944 106-129 (546)
106 PF08317 Spc7: Spc7 kinetochor 93.0 24 0.00053 42.5 25.0 9 670-678 13-21 (325)
107 COG1579 Zn-ribbon protein, pos 93.0 14 0.0003 42.3 21.1 37 972-1008 95-131 (239)
108 TIGR03185 DNA_S_dndD DNA sulfu 92.9 28 0.00061 46.2 27.5 35 1012-1046 425-459 (650)
109 PF09755 DUF2046: Uncharacteri 92.9 25 0.00053 41.6 24.3 20 1032-1051 181-200 (310)
110 smart00787 Spc7 Spc7 kinetocho 92.9 27 0.00058 41.9 25.4 13 1037-1049 272-284 (312)
111 PF06785 UPF0242: Uncharacteri 92.8 14 0.00031 43.2 20.9 35 972-1006 133-167 (401)
112 PF14662 CCDC155: Coiled-coil 92.8 18 0.00038 39.8 25.4 31 972-1002 101-131 (193)
113 PF10168 Nup88: Nuclear pore c 92.8 10 0.00023 50.3 23.0 21 621-641 421-441 (717)
114 PF13401 AAA_22: AAA domain; P 92.8 0.073 1.6E-06 54.5 2.8 29 147-175 2-30 (131)
115 PRK09039 hypothetical protein; 92.8 18 0.00039 44.0 23.3 17 891-907 76-92 (343)
116 PF04849 HAP1_N: HAP1 N-termin 92.6 4.1 8.8E-05 47.9 16.8 18 980-997 234-251 (306)
117 COG4372 Uncharacterized protei 92.6 28 0.00061 41.6 28.1 25 1012-1036 256-280 (499)
118 COG4372 Uncharacterized protei 92.6 29 0.00062 41.6 23.4 33 1013-1045 250-282 (499)
119 PF13191 AAA_16: AAA ATPase do 92.4 0.092 2E-06 57.0 3.0 34 143-176 18-51 (185)
120 PF05667 DUF812: Protein of un 92.4 25 0.00055 45.7 25.1 71 972-1042 446-525 (594)
121 PF13238 AAA_18: AAA domain; P 92.2 0.098 2.1E-06 53.1 2.8 22 152-173 1-22 (129)
122 KOG0612 Rho-associated, coiled 92.1 62 0.0013 44.5 29.3 12 567-578 241-252 (1317)
123 KOG4673 Transcription factor T 92.1 44 0.00096 42.8 28.4 13 427-439 9-21 (961)
124 KOG0963 Transcription factor/C 92.0 45 0.00098 42.7 27.4 22 885-906 192-213 (629)
125 PF05911 DUF869: Plant protein 92.0 24 0.00052 47.1 24.5 81 971-1051 118-205 (769)
126 cd00009 AAA The AAA+ (ATPases 91.8 0.19 4.2E-06 51.3 4.5 29 146-174 16-44 (151)
127 PF12718 Tropomyosin_1: Tropom 91.8 20 0.00043 38.0 20.1 48 991-1038 77-124 (143)
128 KOG0994 Extracellular matrix g 91.8 63 0.0014 43.8 39.2 38 84-121 192-229 (1758)
129 TIGR03015 pepcterm_ATPase puta 91.8 0.16 3.5E-06 59.0 4.3 28 147-174 41-68 (269)
130 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.7 7.8 0.00017 40.4 16.2 69 973-1051 59-127 (132)
131 TIGR02322 phosphon_PhnN phosph 91.7 0.12 2.6E-06 56.3 2.9 24 150-173 2-25 (179)
132 KOG2991 Splicing regulator [RN 91.7 28 0.0006 39.5 25.3 79 971-1049 215-305 (330)
133 PRK09270 nucleoside triphospha 91.6 0.29 6.3E-06 55.8 6.1 34 145-178 29-62 (229)
134 cd02019 NK Nucleoside/nucleoti 91.6 0.14 3.1E-06 46.8 2.8 22 152-173 2-23 (69)
135 PF13851 GAS: Growth-arrest sp 91.6 27 0.00059 39.2 23.2 75 971-1045 91-166 (201)
136 PF10481 CENP-F_N: Cenp-F N-te 91.4 3.8 8.2E-05 46.7 13.9 40 1015-1054 95-134 (307)
137 COG5185 HEC1 Protein involved 91.2 23 0.0005 43.4 20.8 20 851-870 304-323 (622)
138 COG0444 DppD ABC-type dipeptid 91.2 0.12 2.7E-06 60.5 2.4 28 147-174 29-56 (316)
139 PF15070 GOLGA2L5: Putative go 91.1 62 0.0014 42.4 30.4 17 1263-1279 412-428 (617)
140 TIGR00150 HI0065_YjeE ATPase, 90.9 0.32 6.9E-06 50.7 4.9 27 147-173 20-46 (133)
141 PRK06696 uridine kinase; Valid 90.9 0.28 6E-06 55.7 4.9 40 134-175 9-48 (223)
142 PF00004 AAA: ATPase family as 90.8 0.16 3.4E-06 51.8 2.5 23 152-174 1-23 (132)
143 PRK01156 chromosome segregatio 90.7 85 0.0018 43.4 36.1 23 1320-1342 732-754 (895)
144 PRK07196 fliI flagellum-specif 90.6 0.29 6.3E-06 60.6 5.0 42 132-173 138-179 (434)
145 PRK05480 uridine/cytidine kina 90.6 0.21 4.5E-06 56.0 3.5 27 147-173 4-30 (209)
146 PRK00300 gmk guanylate kinase; 90.5 0.17 3.7E-06 56.4 2.8 26 148-173 4-29 (205)
147 cd01131 PilT Pilus retraction 90.4 0.18 3.9E-06 56.2 2.8 25 151-175 3-27 (198)
148 cd00820 PEPCK_HprK Phosphoenol 90.4 0.21 4.5E-06 50.0 2.9 23 148-170 14-36 (107)
149 PRK04778 septation ring format 90.3 27 0.00059 45.5 22.8 196 847-1051 196-412 (569)
150 cd02023 UMPK Uridine monophosp 90.3 0.19 4.1E-06 55.8 2.8 22 152-173 2-23 (198)
151 COG0194 Gmk Guanylate kinase [ 90.2 0.18 4E-06 54.8 2.5 25 149-173 4-28 (191)
152 PF07111 HCR: Alpha helical co 90.2 44 0.00096 43.3 23.1 24 1020-1043 240-263 (739)
153 PF09789 DUF2353: Uncharacteri 90.1 34 0.00074 40.9 21.0 22 1019-1040 193-214 (319)
154 cd01918 HprK_C HprK/P, the bif 90.1 0.22 4.8E-06 52.8 3.0 25 148-172 13-37 (149)
155 PRK13833 conjugal transfer pro 90.1 0.3 6.4E-06 58.5 4.4 34 140-175 137-170 (323)
156 PF15619 Lebercilin: Ciliary p 90.0 36 0.00079 38.0 23.4 70 973-1042 118-191 (194)
157 PF00485 PRK: Phosphoribulokin 89.9 0.21 4.5E-06 55.4 2.8 26 152-177 2-27 (194)
158 TIGR01843 type_I_hlyD type I s 89.7 43 0.00093 41.6 23.4 20 977-996 207-226 (423)
159 PRK12402 replication factor C 89.7 0.4 8.7E-06 57.6 5.2 56 117-174 6-61 (337)
160 cd01129 PulE-GspE PulE/GspE Th 89.7 0.34 7.3E-06 56.6 4.4 35 140-175 72-106 (264)
161 TIGR03420 DnaA_homol_Hda DnaA 89.6 0.44 9.6E-06 53.8 5.2 39 137-175 26-64 (226)
162 PF09789 DUF2353: Uncharacteri 89.6 53 0.0012 39.3 25.2 28 1024-1051 191-218 (319)
163 PF01583 APS_kinase: Adenylyls 89.6 0.34 7.5E-06 51.8 4.0 29 149-177 2-30 (156)
164 TIGR00235 udk uridine kinase. 89.5 0.28 6E-06 55.0 3.4 28 147-174 4-31 (207)
165 PF15619 Lebercilin: Ciliary p 89.4 40 0.00087 37.6 22.3 25 983-1007 121-145 (194)
166 smart00382 AAA ATPases associa 89.4 0.23 4.9E-06 50.2 2.4 28 149-176 2-29 (148)
167 PHA02544 44 clamp loader, smal 89.2 0.38 8.3E-06 57.4 4.5 53 117-173 12-67 (316)
168 COG4942 Membrane-bound metallo 89.2 61 0.0013 40.1 22.7 33 1017-1049 212-244 (420)
169 PRK08233 hypothetical protein; 89.2 0.22 4.8E-06 54.1 2.2 25 150-174 4-28 (182)
170 KOG4360 Uncharacterized coiled 89.1 22 0.00048 44.0 18.7 10 1332-1341 507-516 (596)
171 COG1660 Predicted P-loop-conta 89.0 0.23 5E-06 56.4 2.2 19 151-169 3-21 (286)
172 PF04849 HAP1_N: HAP1 N-termin 89.0 18 0.00039 42.7 17.5 8 980-987 255-262 (306)
173 TIGR02173 cyt_kin_arch cytidyl 88.9 0.26 5.5E-06 53.0 2.5 23 151-173 2-24 (171)
174 PTZ00301 uridine kinase; Provi 88.9 0.28 6.1E-06 55.2 2.9 24 151-174 5-28 (210)
175 cd02020 CMPK Cytidine monophos 88.8 0.29 6.4E-06 51.0 2.8 22 152-173 2-23 (147)
176 COG5185 HEC1 Protein involved 88.8 69 0.0015 39.5 23.4 20 919-938 342-361 (622)
177 PRK05541 adenylylsulfate kinas 88.7 0.31 6.6E-06 53.1 2.9 29 147-175 5-33 (176)
178 PRK08972 fliI flagellum-specif 88.7 0.66 1.4E-05 57.4 6.0 41 132-172 145-185 (444)
179 cd02025 PanK Pantothenate kina 88.6 0.3 6.5E-06 55.4 2.8 24 152-175 2-25 (220)
180 PRK06547 hypothetical protein; 88.5 0.59 1.3E-05 51.0 4.9 29 145-173 11-39 (172)
181 cd02028 UMPK_like Uridine mono 88.5 0.32 7E-06 53.3 2.9 24 152-175 2-25 (179)
182 PRK07261 topology modulation p 88.4 0.33 7.1E-06 52.8 2.9 23 151-173 2-24 (171)
183 PF04091 Sec15: Exocyst comple 88.4 1.5 3.3E-05 52.4 8.7 125 1315-1446 177-310 (311)
184 PF10168 Nup88: Nuclear pore c 88.3 62 0.0014 43.3 24.0 49 541-592 377-432 (717)
185 PF07724 AAA_2: AAA domain (Cd 88.2 0.39 8.4E-06 52.3 3.3 24 151-174 5-28 (171)
186 KOG0999 Microtubule-associated 88.2 82 0.0018 39.6 25.2 17 1325-1341 620-636 (772)
187 KOG4403 Cell surface glycoprot 88.1 56 0.0012 39.7 20.6 26 697-722 69-97 (575)
188 TIGR00554 panK_bact pantothena 88.1 0.99 2.1E-05 53.3 6.8 31 146-176 59-89 (290)
189 PF08614 ATG16: Autophagy prot 88.1 3.6 7.8E-05 45.8 10.9 35 1016-1050 145-179 (194)
190 PRK06762 hypothetical protein; 88.0 0.42 9.1E-06 51.4 3.4 25 149-173 2-26 (166)
191 PRK10884 SH3 domain-containing 88.0 4.8 0.0001 45.2 11.7 15 977-991 136-150 (206)
192 PF15254 CCDC14: Coiled-coil d 88.0 51 0.0011 43.1 21.5 24 883-906 428-451 (861)
193 cd00227 CPT Chloramphenicol (C 87.9 0.4 8.7E-06 52.2 3.2 25 149-173 2-26 (175)
194 cd01130 VirB11-like_ATPase Typ 87.9 0.34 7.3E-06 53.4 2.6 43 126-174 8-50 (186)
195 PRK14737 gmk guanylate kinase; 87.9 0.33 7.1E-06 53.7 2.5 25 149-173 4-28 (186)
196 PRK08118 topology modulation p 87.8 0.39 8.5E-06 52.1 3.0 25 150-174 2-26 (167)
197 PF03668 ATP_bind_2: P-loop AT 87.7 0.34 7.3E-06 56.4 2.5 20 150-169 2-21 (284)
198 TIGR02782 TrbB_P P-type conjug 87.6 0.69 1.5E-05 55.0 5.2 27 149-175 132-158 (299)
199 PF00910 RNA_helicase: RNA hel 87.6 0.37 8.1E-06 48.1 2.5 25 152-176 1-25 (107)
200 PRK00131 aroK shikimate kinase 87.6 0.44 9.6E-06 51.2 3.3 26 148-173 3-28 (175)
201 KOG4593 Mitotic checkpoint pro 87.6 1E+02 0.0022 40.1 30.2 211 834-1051 61-290 (716)
202 cd00071 GMPK Guanosine monopho 87.5 0.32 6.9E-06 51.0 2.0 22 152-173 2-23 (137)
203 PRK10078 ribose 1,5-bisphospho 87.5 0.32 6.9E-06 53.6 2.1 25 149-173 2-26 (186)
204 PF12846 AAA_10: AAA-like doma 87.4 0.44 9.6E-06 55.9 3.4 29 149-177 1-29 (304)
205 PRK10884 SH3 domain-containing 87.3 6.4 0.00014 44.2 12.1 76 972-1050 92-167 (206)
206 PF05729 NACHT: NACHT domain 87.3 0.46 9.9E-06 50.3 3.1 27 151-177 2-28 (166)
207 PRK10929 putative mechanosensi 87.2 62 0.0013 45.2 23.5 13 1401-1413 919-931 (1109)
208 KOG0978 E3 ubiquitin ligase in 87.2 1.1E+02 0.0025 40.2 39.2 50 1005-1054 570-619 (698)
209 TIGR03007 pepcterm_ChnLen poly 87.2 49 0.0011 42.3 21.9 17 971-987 252-268 (498)
210 TIGR02928 orc1/cdc6 family rep 87.1 0.6 1.3E-05 56.9 4.4 36 140-175 31-66 (365)
211 PRK00889 adenylylsulfate kinas 87.0 0.63 1.4E-05 50.6 4.1 29 148-176 3-31 (175)
212 TIGR01843 type_I_hlyD type I s 87.0 68 0.0015 39.8 22.7 34 974-1007 197-230 (423)
213 KOG2891 Surface glycoprotein [ 87.0 57 0.0012 37.3 18.9 28 654-681 107-138 (445)
214 PF04156 IncA: IncA protein; 87.0 18 0.0004 39.9 15.7 28 1016-1043 159-186 (191)
215 TIGR01420 pilT_fam pilus retra 86.9 0.41 8.9E-06 58.1 2.8 26 149-174 122-147 (343)
216 KOG1003 Actin filament-coating 86.9 31 0.00068 37.9 16.3 32 972-1003 59-90 (205)
217 PLN03025 replication factor C 86.8 0.74 1.6E-05 55.3 4.9 56 117-174 4-59 (319)
218 TIGR01313 therm_gnt_kin carboh 86.8 0.35 7.6E-06 51.8 1.9 23 152-174 1-23 (163)
219 PRK13851 type IV secretion sys 86.7 0.5 1.1E-05 57.2 3.3 26 149-174 162-187 (344)
220 cd02024 NRK1 Nicotinamide ribo 86.7 0.41 9E-06 52.9 2.4 22 152-173 2-23 (187)
221 PRK14961 DNA polymerase III su 86.6 1.1 2.3E-05 55.0 6.1 54 117-174 7-63 (363)
222 PF09755 DUF2046: Uncharacteri 86.6 77 0.0017 37.6 26.7 16 1027-1042 183-198 (310)
223 PF04437 RINT1_TIP1: RINT-1 / 86.5 15 0.00033 47.0 16.7 169 1259-1444 307-491 (494)
224 COG4172 ABC-type uncharacteriz 86.5 0.35 7.6E-06 58.0 1.8 28 149-176 36-63 (534)
225 KOG0995 Centromere-associated 86.5 1.1E+02 0.0023 39.1 33.6 26 799-824 264-289 (581)
226 PRK14738 gmk guanylate kinase; 86.4 0.5 1.1E-05 53.1 3.0 26 147-172 11-36 (206)
227 PRK08084 DNA replication initi 86.4 1 2.2E-05 51.7 5.5 40 136-175 32-71 (235)
228 PF13851 GAS: Growth-arrest sp 86.4 62 0.0014 36.3 20.5 27 974-1000 101-127 (201)
229 TIGR03263 guanyl_kin guanylate 86.3 0.38 8.2E-06 52.4 1.9 24 150-173 2-25 (180)
230 PRK06315 type III secretion sy 86.3 0.97 2.1E-05 56.2 5.6 37 137-173 152-188 (442)
231 COG4608 AppF ABC-type oligopep 86.3 0.46 9.9E-06 54.8 2.5 32 147-178 37-68 (268)
232 PRK08472 fliI flagellum-specif 86.3 1.9 4E-05 53.7 8.0 41 133-173 141-181 (434)
233 KOG1003 Actin filament-coating 86.3 58 0.0013 35.9 21.4 26 973-998 109-134 (205)
234 cd01120 RecA-like_NTPases RecA 86.1 0.58 1.3E-05 49.2 3.2 25 152-176 2-26 (165)
235 PRK13900 type IV secretion sys 86.1 0.68 1.5E-05 55.8 4.0 31 142-174 155-185 (332)
236 KOG4673 Transcription factor T 86.1 1.2E+02 0.0025 39.3 39.2 54 889-942 580-633 (961)
237 KOG0979 Structural maintenance 86.0 1.1E+02 0.0023 41.6 23.3 20 884-903 204-223 (1072)
238 PRK09099 type III secretion sy 85.9 1.5 3.3E-05 54.6 7.0 36 138-173 152-187 (441)
239 TIGR02524 dot_icm_DotB Dot/Icm 85.9 0.51 1.1E-05 57.5 2.9 28 148-175 133-160 (358)
240 cd02027 APSK Adenosine 5'-phos 85.9 0.56 1.2E-05 49.8 2.9 24 152-175 2-25 (149)
241 PRK00440 rfc replication facto 85.8 0.87 1.9E-05 54.2 4.8 55 118-174 9-63 (319)
242 PF13870 DUF4201: Domain of un 85.8 59 0.0013 35.6 20.0 22 1019-1040 149-170 (177)
243 PF13245 AAA_19: Part of AAA d 85.7 0.91 2E-05 42.6 3.8 28 148-175 9-36 (76)
244 PRK10751 molybdopterin-guanine 85.5 0.61 1.3E-05 50.8 2.9 27 150-176 7-33 (173)
245 PF00038 Filament: Intermediat 85.5 89 0.0019 37.3 34.8 33 975-1007 218-250 (312)
246 PRK14956 DNA polymerase III su 85.5 1 2.2E-05 56.5 5.1 54 118-175 10-66 (484)
247 PRK06217 hypothetical protein; 85.5 0.53 1.1E-05 51.7 2.5 23 151-173 3-25 (183)
248 PTZ00121 MAEBL; Provisional 85.4 1.8E+02 0.004 40.9 35.9 33 65-97 162-194 (2084)
249 PRK12377 putative replication 85.4 1.3 2.8E-05 51.3 5.7 45 130-176 84-128 (248)
250 TIGR02902 spore_lonB ATP-depen 85.4 0.89 1.9E-05 58.4 4.9 30 144-173 81-110 (531)
251 PRK03846 adenylylsulfate kinas 85.4 0.99 2.1E-05 50.2 4.7 32 145-176 20-51 (198)
252 PTZ00112 origin recognition co 85.4 1.4 3E-05 58.1 6.4 45 132-176 764-808 (1164)
253 PF13671 AAA_33: AAA domain; P 85.3 0.49 1.1E-05 49.2 2.1 23 152-174 2-24 (143)
254 PF10481 CENP-F_N: Cenp-F N-te 85.2 71 0.0015 36.9 18.6 32 973-1004 95-126 (307)
255 PF08826 DMPK_coil: DMPK coile 85.1 9.8 0.00021 34.2 9.7 45 998-1042 15-59 (61)
256 cd00464 SK Shikimate kinase (S 85.1 0.59 1.3E-05 49.3 2.6 23 151-173 1-23 (154)
257 PRK00411 cdc6 cell division co 85.1 0.91 2E-05 56.0 4.6 33 143-175 49-81 (394)
258 TIGR02525 plasmid_TraJ plasmid 85.0 0.6 1.3E-05 57.0 2.9 27 149-175 149-175 (372)
259 COG1340 Uncharacterized archae 84.9 90 0.002 36.9 31.7 74 972-1045 178-251 (294)
260 KOG1937 Uncharacterized conser 84.9 1.1E+02 0.0024 37.8 21.6 15 663-677 75-89 (521)
261 PRK06645 DNA polymerase III su 84.9 1 2.2E-05 57.2 4.9 56 118-176 13-70 (507)
262 PRK14964 DNA polymerase III su 84.8 1 2.2E-05 56.8 4.9 58 117-177 4-63 (491)
263 PF00437 T2SE: Type II/IV secr 84.8 0.59 1.3E-05 54.6 2.6 28 148-175 126-153 (270)
264 PF05010 TACC: Transforming ac 84.6 76 0.0017 35.8 22.9 18 980-997 118-135 (207)
265 PRK08903 DnaA regulatory inact 84.5 1.5 3.3E-05 49.7 5.8 29 147-175 40-68 (227)
266 COG1125 OpuBA ABC-type proline 84.5 0.46 1E-05 54.0 1.5 27 150-176 28-54 (309)
267 COG1102 Cmk Cytidylate kinase 84.5 0.71 1.5E-05 49.1 2.7 23 152-174 3-25 (179)
268 COG0563 Adk Adenylate kinase a 84.5 0.68 1.5E-05 50.8 2.8 23 151-173 2-24 (178)
269 COG0572 Udk Uridine kinase [Nu 84.4 0.68 1.5E-05 52.0 2.8 24 151-174 10-33 (218)
270 PRK07721 fliI flagellum-specif 84.4 3 6.4E-05 52.2 8.6 41 133-173 142-182 (438)
271 KOG0946 ER-Golgi vesicle-tethe 84.3 1E+02 0.0022 40.7 21.5 21 354-374 143-163 (970)
272 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.3 57 0.0012 34.1 18.2 64 972-1038 65-128 (132)
273 PF10473 CENP-F_leu_zip: Leuci 84.3 60 0.0013 34.3 20.2 14 893-906 21-34 (140)
274 PF03205 MobB: Molybdopterin g 84.0 0.85 1.8E-05 48.0 3.2 27 151-177 2-28 (140)
275 COG1123 ATPase components of v 83.9 0.57 1.2E-05 59.1 2.1 30 147-176 33-62 (539)
276 PF10473 CENP-F_leu_zip: Leuci 83.9 60 0.0013 34.3 16.4 34 972-1005 58-91 (140)
277 KOG0249 LAR-interacting protei 83.7 85 0.0018 40.7 20.2 20 1366-1393 756-775 (916)
278 cd02021 GntK Gluconate kinase 83.6 0.71 1.5E-05 48.7 2.4 22 152-173 2-23 (150)
279 KOG1937 Uncharacterized conser 83.5 1.2E+02 0.0027 37.4 22.8 18 973-990 345-362 (521)
280 PRK05342 clpX ATP-dependent pr 83.4 1.7 3.7E-05 54.0 5.9 63 111-173 59-132 (412)
281 PRK05896 DNA polymerase III su 83.4 1.5 3.4E-05 56.3 5.6 59 116-176 6-65 (605)
282 PF03266 NTPase_1: NTPase; In 83.3 0.87 1.9E-05 49.5 2.9 24 152-175 2-25 (168)
283 PRK05057 aroK shikimate kinase 83.1 0.89 1.9E-05 49.5 3.0 25 149-173 4-28 (172)
284 TIGR01360 aden_kin_iso1 adenyl 83.0 0.85 1.8E-05 49.8 2.8 23 151-173 5-27 (188)
285 COG1493 HprK Serine kinase of 83.0 0.68 1.5E-05 53.8 2.0 24 149-172 145-168 (308)
286 PRK09825 idnK D-gluconate kina 83.0 0.93 2E-05 49.6 3.1 26 149-174 3-28 (176)
287 KOG1962 B-cell receptor-associ 82.9 4.6 9.9E-05 45.2 8.3 62 978-1039 149-210 (216)
288 PRK13894 conjugal transfer ATP 82.9 1.6 3.4E-05 52.5 5.2 27 149-175 148-174 (319)
289 PRK13342 recombination factor 82.8 1.3 2.9E-05 55.1 4.7 43 130-173 18-60 (413)
290 TIGR02903 spore_lon_C ATP-depe 82.8 1.6 3.5E-05 57.1 5.6 36 141-176 167-202 (615)
291 TIGR01005 eps_transp_fam exopo 82.8 1.9E+02 0.0042 39.1 29.5 15 1426-1440 659-673 (754)
292 PRK09111 DNA polymerase III su 82.8 1 2.2E-05 58.4 3.8 55 118-176 16-73 (598)
293 PRK04182 cytidylate kinase; Pr 82.8 0.8 1.7E-05 49.6 2.5 23 151-173 2-24 (180)
294 COG1124 DppF ABC-type dipeptid 82.8 0.89 1.9E-05 51.6 2.8 29 147-175 31-59 (252)
295 cd02029 PRK_like Phosphoribulo 82.7 0.98 2.1E-05 52.4 3.2 24 152-175 2-25 (277)
296 PF15397 DUF4618: Domain of un 82.6 1E+02 0.0022 35.8 26.4 35 1019-1053 190-224 (258)
297 TIGR02533 type_II_gspE general 82.6 1.1 2.3E-05 56.9 3.8 35 139-174 233-267 (486)
298 PRK13764 ATPase; Provisional 82.5 0.99 2.1E-05 58.2 3.4 27 149-175 257-283 (602)
299 COG4026 Uncharacterized protei 82.5 10 0.00023 41.8 10.5 25 1011-1035 166-190 (290)
300 PHA00729 NTP-binding motif con 82.4 1.7 3.7E-05 49.3 4.9 28 147-174 15-42 (226)
301 cd03115 SRP The signal recogni 82.3 1.2 2.6E-05 48.3 3.6 27 151-177 2-28 (173)
302 KOG0018 Structural maintenance 82.3 2.1E+02 0.0046 39.2 37.9 31 1490-1523 1077-1107(1141)
303 TIGR01005 eps_transp_fam exopo 82.3 1.1E+02 0.0023 41.6 22.7 15 833-847 168-182 (754)
304 PRK14957 DNA polymerase III su 82.2 1.8 3.9E-05 55.5 5.6 55 117-175 7-64 (546)
305 PRK07667 uridine kinase; Provi 82.2 1.7 3.6E-05 48.3 4.7 26 150-175 18-43 (193)
306 PF06785 UPF0242: Uncharacteri 82.2 1.1E+02 0.0023 36.4 18.8 20 881-900 98-117 (401)
307 PF07728 AAA_5: AAA domain (dy 82.2 1 2.2E-05 46.9 2.8 22 152-173 2-23 (139)
308 COG4172 ABC-type uncharacteriz 82.1 0.79 1.7E-05 55.1 2.2 30 147-176 311-340 (534)
309 PRK04040 adenylate kinase; Pro 82.1 0.94 2E-05 50.2 2.7 25 150-174 3-27 (188)
310 KOG4460 Nuclear pore complex, 82.0 1.5E+02 0.0032 37.5 20.8 27 972-998 661-687 (741)
311 PRK14955 DNA polymerase III su 81.9 1.8 4E-05 53.6 5.5 56 118-175 8-64 (397)
312 PF09465 LBR_tudor: Lamin-B re 81.9 5.2 0.00011 35.0 6.4 49 2-51 1-53 (55)
313 PF14197 Cep57_CLD_2: Centroso 81.8 12 0.00027 34.5 9.3 65 977-1041 2-66 (69)
314 COG1382 GimC Prefoldin, chaper 81.8 25 0.00054 35.9 12.2 40 1011-1050 73-112 (119)
315 PRK06002 fliI flagellum-specif 81.8 1.2 2.6E-05 55.4 3.7 31 142-172 158-188 (450)
316 PF05622 HOOK: HOOK protein; 81.8 0.45 9.7E-06 63.4 0.0 22 1015-1036 398-419 (713)
317 COG2884 FtsE Predicted ATPase 81.7 0.95 2.1E-05 49.5 2.4 25 148-172 27-51 (223)
318 PRK14974 cell division protein 81.6 2.2 4.9E-05 51.4 5.9 31 147-177 138-168 (336)
319 PF10186 Atg14: UV radiation r 81.6 41 0.00088 39.7 16.5 27 975-1001 72-98 (302)
320 PRK14527 adenylate kinase; Pro 81.6 1.2 2.6E-05 49.2 3.3 28 147-174 4-31 (191)
321 PF07475 Hpr_kinase_C: HPr Ser 81.6 1 2.2E-05 48.6 2.6 23 149-171 18-40 (171)
322 COG0529 CysC Adenylylsulfate k 81.5 1.9 4.1E-05 46.7 4.6 43 134-177 9-51 (197)
323 smart00333 TUDOR Tudor domain. 81.5 4.3 9.2E-05 35.4 6.1 51 6-56 2-54 (57)
324 TIGR02546 III_secr_ATP type II 81.5 3.1 6.6E-05 51.9 7.1 38 136-173 132-169 (422)
325 PF02367 UPF0079: Uncharacteri 81.5 1.1 2.5E-05 46.0 2.8 27 147-173 13-39 (123)
326 PRK14732 coaE dephospho-CoA ki 81.4 1.1 2.5E-05 49.8 3.0 47 152-203 2-53 (196)
327 PRK14969 DNA polymerase III su 81.3 1.8 3.8E-05 55.7 5.1 55 117-175 7-64 (527)
328 PRK11281 hypothetical protein; 81.3 1.1E+02 0.0023 43.1 21.9 178 867-1047 58-262 (1113)
329 PF03215 Rad17: Rad17 cell cyc 81.3 1.4 3E-05 56.3 4.0 58 116-173 9-69 (519)
330 KOG2129 Uncharacterized conser 81.2 1.4E+02 0.003 36.4 20.3 28 977-1004 250-277 (552)
331 PF10498 IFT57: Intra-flagella 81.2 42 0.00092 41.0 16.4 9 638-646 62-70 (359)
332 PRK06761 hypothetical protein; 81.2 0.97 2.1E-05 53.1 2.5 26 150-175 4-29 (282)
333 KOG0804 Cytoplasmic Zn-finger 81.1 49 0.0011 40.7 16.3 13 658-670 103-115 (493)
334 PF09730 BicD: Microtubule-ass 81.1 1.2E+02 0.0026 40.4 21.2 14 1398-1411 549-562 (717)
335 PRK05416 glmZ(sRNA)-inactivati 81.1 0.99 2.2E-05 53.3 2.6 21 149-169 6-26 (288)
336 TIGR03499 FlhF flagellar biosy 81.1 1.4 2.9E-05 52.1 3.7 45 132-176 169-221 (282)
337 KOG0979 Structural maintenance 80.9 1.6E+02 0.0034 40.1 21.9 9 669-677 23-31 (1072)
338 TIGR00064 ftsY signal recognit 80.9 2.7 5.8E-05 49.4 6.0 47 131-177 45-100 (272)
339 PF13555 AAA_29: P-loop contai 80.8 1.6 3.4E-05 39.4 3.1 20 151-170 25-44 (62)
340 TIGR00176 mobB molybdopterin-g 80.8 1.3 2.9E-05 47.4 3.2 26 152-177 2-27 (155)
341 PRK15093 antimicrobial peptide 80.8 1.1 2.4E-05 54.1 2.9 27 147-173 31-57 (330)
342 PRK08356 hypothetical protein; 80.8 0.98 2.1E-05 50.2 2.3 22 150-171 6-27 (195)
343 PRK01156 chromosome segregatio 80.7 2.5E+02 0.0054 38.9 36.2 32 1018-1049 412-443 (895)
344 PRK15453 phosphoribulokinase; 80.7 1.2 2.7E-05 52.0 3.1 26 148-173 4-29 (290)
345 cd03293 ABC_NrtD_SsuB_transpor 80.6 1.1 2.4E-05 50.6 2.7 27 147-173 28-54 (220)
346 cd02034 CooC The accessory pro 80.6 1.5 3.3E-05 44.6 3.4 26 152-177 2-27 (116)
347 PRK14959 DNA polymerase III su 80.5 1.8 4E-05 55.9 4.8 56 116-175 6-64 (624)
348 PRK04195 replication factor C 80.5 1.6 3.4E-05 55.6 4.3 27 147-173 37-63 (482)
349 TIGR02868 CydC thiol reductant 80.5 0.71 1.5E-05 59.4 1.2 31 147-177 359-389 (529)
350 TIGR02680 conserved hypothetic 80.5 3.1E+02 0.0067 39.9 31.8 27 150-176 25-51 (1353)
351 TIGR02673 FtsE cell division A 80.4 1.2 2.6E-05 50.0 2.8 27 147-173 26-52 (214)
352 PRK08727 hypothetical protein; 80.4 2.3 5E-05 48.7 5.2 31 146-176 38-68 (233)
353 PRK11308 dppF dipeptide transp 80.4 1.2 2.5E-05 53.8 2.9 27 147-173 39-65 (327)
354 PF12325 TMF_TATA_bd: TATA ele 80.3 50 0.0011 34.0 14.0 16 983-998 71-86 (120)
355 PRK10416 signal recognition pa 80.3 1.6 3.4E-05 52.4 4.0 31 147-177 112-142 (318)
356 PF04665 Pox_A32: Poxvirus A32 80.3 1.2 2.5E-05 51.1 2.7 26 150-175 14-39 (241)
357 PRK14963 DNA polymerase III su 80.3 1.8 3.8E-05 55.2 4.6 55 118-175 6-62 (504)
358 TIGR00960 3a0501s02 Type II (G 80.3 1.2 2.6E-05 50.1 2.8 27 147-173 27-53 (216)
359 KOG0056 Heavy metal exporter H 80.2 1.4 3.1E-05 53.8 3.5 41 148-188 563-603 (790)
360 PRK14958 DNA polymerase III su 80.2 2.2 4.7E-05 54.5 5.4 55 117-175 7-64 (509)
361 PF00005 ABC_tran: ABC transpo 80.2 1.2 2.5E-05 46.1 2.5 26 148-173 10-35 (137)
362 PF00625 Guanylate_kin: Guanyl 80.1 1.4 3E-05 48.4 3.1 26 149-174 2-27 (183)
363 TIGR01166 cbiO cobalt transpor 80.1 1.3 2.7E-05 48.9 2.9 25 147-171 16-40 (190)
364 PRK05537 bifunctional sulfate 80.0 1.7 3.7E-05 56.2 4.4 44 130-175 375-418 (568)
365 TIGR02788 VirB11 P-type DNA tr 79.9 0.99 2.1E-05 54.0 2.1 25 149-173 144-168 (308)
366 PRK09112 DNA polymerase III su 79.9 2.2 4.7E-05 52.0 5.0 40 136-175 31-71 (351)
367 PRK06893 DNA replication initi 79.9 2.6 5.6E-05 48.2 5.4 45 130-176 22-66 (229)
368 PRK15177 Vi polysaccharide exp 79.9 1.3 2.8E-05 50.0 2.8 27 147-173 11-37 (213)
369 cd03225 ABC_cobalt_CbiO_domain 79.9 1.3 2.8E-05 49.6 2.9 27 147-173 25-51 (211)
370 PF08614 ATG16: Autophagy prot 79.8 19 0.00041 40.1 12.0 66 971-1036 114-179 (194)
371 TIGR02881 spore_V_K stage V sp 79.8 1.5 3.2E-05 51.1 3.5 31 147-177 40-70 (261)
372 PRK04220 2-phosphoglycerate ki 79.8 2 4.3E-05 50.8 4.4 27 147-173 90-116 (301)
373 PRK00698 tmk thymidylate kinas 79.7 1.7 3.7E-05 48.2 3.8 28 149-176 3-30 (205)
374 PRK08154 anaerobic benzoate ca 79.7 2.1 4.7E-05 51.1 4.8 48 126-173 106-157 (309)
375 cd03260 ABC_PstB_phosphate_tra 79.7 1.2 2.5E-05 50.7 2.4 27 147-173 24-50 (227)
376 PLN03188 kinesin-12 family pro 79.7 2.8E+02 0.0061 39.0 24.5 37 130-166 147-183 (1320)
377 PF03193 DUF258: Protein of un 79.7 1.5 3.2E-05 47.2 3.1 25 148-172 34-58 (161)
378 PRK15079 oligopeptide ABC tran 79.7 1.2 2.7E-05 53.7 2.8 27 147-173 45-71 (331)
379 PRK09473 oppD oligopeptide tra 79.6 1.2 2.6E-05 53.8 2.6 27 147-173 40-66 (330)
380 cd01124 KaiC KaiC is a circadi 79.6 1.5 3.2E-05 47.9 3.1 27 151-177 1-27 (187)
381 TIGR00678 holB DNA polymerase 79.6 2.3 5E-05 46.8 4.7 36 140-175 4-40 (188)
382 PRK14528 adenylate kinase; Pro 79.6 1.4 3.1E-05 48.5 3.1 24 150-173 2-25 (186)
383 TIGR01026 fliI_yscN ATPase Fli 79.5 3.1 6.7E-05 52.1 6.2 41 133-173 147-187 (440)
384 PRK08116 hypothetical protein; 79.5 2.9 6.3E-05 49.0 5.7 47 130-176 94-141 (268)
385 PRK14970 DNA polymerase III su 79.4 2.9 6.4E-05 51.1 6.0 58 116-175 7-65 (367)
386 cd03259 ABC_Carb_Solutes_like 79.4 1.4 3E-05 49.5 2.9 27 147-173 24-50 (213)
387 TIGR00455 apsK adenylylsulfate 79.4 2.1 4.6E-05 46.9 4.4 29 147-175 16-44 (184)
388 PF00308 Bac_DnaA: Bacterial d 79.3 2.7 5.9E-05 47.6 5.3 41 136-176 19-61 (219)
389 TIGR03497 FliI_clade2 flagella 79.3 3.6 7.9E-05 51.0 6.7 36 138-173 126-161 (413)
390 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.2 1.4 3E-05 49.6 2.9 27 147-173 28-54 (218)
391 PRK14950 DNA polymerase III su 79.1 2.5 5.4E-05 55.1 5.5 55 118-175 8-64 (585)
392 PRK05922 type III secretion sy 79.0 1.7 3.7E-05 54.0 3.7 42 132-173 140-181 (434)
393 PRK14962 DNA polymerase III su 79.0 2.6 5.6E-05 53.3 5.5 53 118-174 6-61 (472)
394 COG1123 ATPase components of v 79.0 1.3 2.9E-05 55.9 2.8 29 147-175 315-343 (539)
395 PF04111 APG6: Autophagy prote 79.0 23 0.0005 42.5 13.1 13 1318-1330 289-301 (314)
396 PRK13768 GTPase; Provisional 78.9 1.6 3.4E-05 50.7 3.3 27 151-177 4-30 (253)
397 PRK11022 dppD dipeptide transp 78.9 1.3 2.9E-05 53.3 2.8 27 147-173 31-57 (326)
398 cd03116 MobB Molybdenum is an 78.9 1.8 4E-05 46.5 3.5 28 150-177 2-29 (159)
399 TIGR03608 L_ocin_972_ABC putat 78.9 1.4 3.1E-05 49.1 2.8 27 147-173 22-48 (206)
400 COG2274 SunT ABC-type bacterio 78.8 0.94 2E-05 59.8 1.5 32 147-178 497-528 (709)
401 PF00158 Sigma54_activat: Sigm 78.8 1.3 2.9E-05 48.1 2.4 25 147-171 20-44 (168)
402 PF13479 AAA_24: AAA domain 78.7 1.2 2.7E-05 50.2 2.3 22 148-169 2-23 (213)
403 TIGR01359 UMP_CMP_kin_fam UMP- 78.7 1.4 3E-05 48.1 2.7 23 152-174 2-24 (183)
404 PRK06936 type III secretion sy 78.7 1.9 4E-05 53.7 3.9 41 133-173 146-186 (439)
405 cd03296 ABC_CysA_sulfate_impor 78.6 1.5 3.2E-05 50.3 2.9 27 147-173 26-52 (239)
406 cd01983 Fer4_NifH The Fer4_Nif 78.6 1.9 4.1E-05 40.9 3.2 25 152-176 2-26 (99)
407 TIGR02880 cbbX_cfxQ probable R 78.6 1.6 3.4E-05 51.7 3.1 28 151-178 60-87 (284)
408 cd03229 ABC_Class3 This class 78.6 1.5 3.3E-05 47.8 2.9 27 147-173 24-50 (178)
409 PRK10361 DNA recombination pro 78.6 2E+02 0.0043 36.6 25.4 157 866-1054 24-190 (475)
410 PRK13341 recombination factor 78.5 2.4 5.3E-05 56.2 5.1 36 138-173 41-76 (725)
411 COG0802 Predicted ATPase or ki 78.4 3.4 7.4E-05 43.7 5.2 29 147-175 23-51 (149)
412 COG2433 Uncharacterized conser 78.4 18 0.0004 45.8 12.1 31 1018-1048 477-507 (652)
413 KOG4809 Rab6 GTPase-interactin 78.4 1.9E+02 0.0041 36.7 20.2 182 862-1048 304-496 (654)
414 cd03258 ABC_MetN_methionine_tr 78.3 1 2.3E-05 51.2 1.5 27 147-173 29-55 (233)
415 PF04111 APG6: Autophagy prote 78.3 22 0.00048 42.7 12.7 11 1319-1329 294-304 (314)
416 cd03235 ABC_Metallic_Cations A 78.2 1.4 3.1E-05 49.4 2.6 27 147-173 23-49 (213)
417 PRK06921 hypothetical protein; 78.2 2.1 4.5E-05 50.1 4.0 28 148-175 116-143 (266)
418 PLN02796 D-glycerate 3-kinase 78.1 1.5 3.2E-05 52.8 2.8 24 151-174 102-125 (347)
419 cd03292 ABC_FtsE_transporter F 78.0 1.6 3.4E-05 49.0 2.8 27 147-173 25-51 (214)
420 smart00072 GuKc Guanylate kina 77.9 1.5 3.2E-05 48.3 2.5 23 151-173 4-26 (184)
421 PRK06305 DNA polymerase III su 77.8 3.1 6.7E-05 52.4 5.6 56 118-175 9-65 (451)
422 cd02026 PRK Phosphoribulokinas 77.8 1.5 3.3E-05 51.5 2.7 22 152-173 2-23 (273)
423 PRK12608 transcription termina 77.7 2.1 4.6E-05 52.0 3.9 42 134-175 118-159 (380)
424 PRK06835 DNA replication prote 77.4 3.9 8.5E-05 49.3 6.1 29 148-176 182-210 (329)
425 PRK14531 adenylate kinase; Pro 77.4 1.8 4E-05 47.5 3.1 25 150-174 3-27 (183)
426 PRK11176 lipid transporter ATP 77.4 1.3 2.8E-05 57.7 2.2 29 147-175 367-395 (582)
427 PRK05563 DNA polymerase III su 77.4 2.9 6.3E-05 54.1 5.3 56 118-176 8-65 (559)
428 TIGR02640 gas_vesic_GvpN gas v 77.4 3 6.5E-05 48.6 5.0 42 129-173 4-45 (262)
429 PRK05201 hslU ATP-dependent pr 77.4 4.2 9.1E-05 50.2 6.3 61 113-173 5-74 (443)
430 PRK00023 cmk cytidylate kinase 77.4 1.7 3.7E-05 49.6 2.9 26 149-174 4-29 (225)
431 COG4619 ABC-type uncharacteriz 77.2 1.6 3.4E-05 46.8 2.3 24 148-171 28-51 (223)
432 cd03224 ABC_TM1139_LivF_branch 77.2 1.7 3.7E-05 49.0 2.9 26 147-172 24-49 (222)
433 TIGR03574 selen_PSTK L-seryl-t 77.2 1.7 3.6E-05 50.2 2.8 24 152-175 2-25 (249)
434 cd03297 ABC_ModC_molybdenum_tr 77.2 1.7 3.7E-05 48.9 2.8 26 147-173 22-47 (214)
435 cd03256 ABC_PhnC_transporter A 77.2 1.7 3.7E-05 49.7 2.9 27 147-173 25-51 (241)
436 COG4088 Predicted nucleotide k 77.1 2.4 5.1E-05 46.9 3.7 26 151-176 3-28 (261)
437 TIGR03864 PQQ_ABC_ATP ABC tran 77.1 1.7 3.8E-05 49.6 2.9 27 147-173 25-51 (236)
438 PRK10646 ADP-binding protein; 77.1 3.9 8.5E-05 43.7 5.3 26 149-174 28-53 (153)
439 PRK11124 artP arginine transpo 77.0 1.7 3.8E-05 49.8 2.9 26 147-172 26-51 (242)
440 cd03223 ABCD_peroxisomal_ALDP 77.0 1.8 3.9E-05 46.7 2.9 27 147-173 25-51 (166)
441 PHA02530 pseT polynucleotide k 77.0 1.6 3.5E-05 51.7 2.7 24 150-173 3-26 (300)
442 PF01695 IstB_IS21: IstB-like 77.0 3.3 7.1E-05 45.4 4.9 30 147-176 45-74 (178)
443 PRK03839 putative kinase; Prov 76.9 1.8 3.9E-05 47.3 2.8 23 151-173 2-24 (180)
444 PF07106 TBPIP: Tat binding pr 76.9 25 0.00055 38.2 11.7 66 971-1036 70-137 (169)
445 TIGR02315 ABC_phnC phosphonate 76.8 1.8 3.8E-05 49.7 2.9 27 147-173 26-52 (243)
446 cd03268 ABC_BcrA_bacitracin_re 76.8 1.8 3.9E-05 48.3 2.9 27 147-173 24-50 (208)
447 PF12777 MT: Microtubule-bindi 76.7 1.4E+02 0.0031 36.3 19.3 13 1017-1029 244-256 (344)
448 COG2805 PilT Tfp pilus assembl 76.6 1.9 4E-05 50.4 2.9 75 87-175 70-151 (353)
449 cd03266 ABC_NatA_sodium_export 76.6 1.8 4E-05 48.6 2.9 25 147-171 29-53 (218)
450 PRK14960 DNA polymerase III su 76.5 3 6.5E-05 54.1 5.0 54 118-175 7-63 (702)
451 TIGR01184 ntrCD nitrate transp 76.5 1.8 4E-05 49.3 2.9 27 147-173 9-35 (230)
452 PF14532 Sigma54_activ_2: Sigm 76.5 1.2 2.5E-05 46.6 1.1 25 147-171 19-43 (138)
453 PRK02496 adk adenylate kinase; 76.4 1.9 4.1E-05 47.3 2.8 22 152-173 4-25 (184)
454 PRK13539 cytochrome c biogenes 76.3 1.9 4.1E-05 48.3 2.9 26 147-172 26-51 (207)
455 PRK10929 putative mechanosensi 76.3 3.5E+02 0.0075 38.2 27.9 6 813-818 28-33 (1109)
456 cd03265 ABC_DrrA DrrA is the A 76.3 1.9 4.1E-05 48.7 2.9 25 147-171 24-48 (220)
457 TIGR00382 clpX endopeptidase C 76.3 4.1 8.9E-05 50.5 5.9 25 149-173 116-140 (413)
458 PRK10908 cell division protein 76.2 1.9 4.1E-05 48.7 2.9 26 147-172 26-51 (222)
459 PRK10436 hypothetical protein; 76.2 1.7 3.7E-05 54.6 2.7 35 139-174 209-243 (462)
460 PRK05439 pantothenate kinase; 76.2 4 8.6E-05 48.8 5.6 32 145-176 82-113 (311)
461 PF01580 FtsK_SpoIIIE: FtsK/Sp 76.2 2 4.3E-05 48.0 3.0 26 151-176 40-65 (205)
462 PF01637 Arch_ATPase: Archaeal 76.1 1.9 4.1E-05 48.3 2.9 33 141-173 12-44 (234)
463 TIGR00972 3a0107s01c2 phosphat 76.1 1.9 4.1E-05 49.6 2.9 27 147-173 25-51 (247)
464 cd03219 ABC_Mj1267_LivG_branch 76.1 1.8 3.9E-05 49.4 2.7 27 147-173 24-50 (236)
465 cd01672 TMPK Thymidine monopho 76.0 2.2 4.7E-05 46.8 3.2 24 152-175 3-26 (200)
466 cd03226 ABC_cobalt_CbiO_domain 76.0 1.9 4.1E-05 48.1 2.8 26 147-172 24-49 (205)
467 cd03269 ABC_putative_ATPase Th 75.9 2 4.3E-05 48.1 2.9 26 147-172 24-49 (210)
468 cd03230 ABC_DR_subfamily_A Thi 75.9 2 4.4E-05 46.6 2.9 26 147-172 24-49 (173)
469 TIGR03410 urea_trans_UrtE urea 75.8 1.3 2.8E-05 50.3 1.4 27 147-173 24-50 (230)
470 cd03245 ABCC_bacteriocin_expor 75.8 2 4.3E-05 48.5 2.9 26 147-172 28-53 (220)
471 PRK07133 DNA polymerase III su 75.7 3.5 7.6E-05 54.3 5.4 57 117-175 9-66 (725)
472 cd03262 ABC_HisP_GlnQ_permease 75.7 2 4.4E-05 48.1 2.9 27 147-173 24-50 (213)
473 PRK10584 putative ABC transpor 75.7 2 4.3E-05 48.7 2.9 27 147-173 34-60 (228)
474 TIGR01978 sufC FeS assembly AT 75.7 1.9 4.2E-05 49.3 2.8 26 147-172 24-49 (243)
475 PF07058 Myosin_HC-like: Myosi 75.6 1.1E+02 0.0023 36.0 16.2 47 885-935 3-49 (351)
476 cd03270 ABC_UvrA_I The excisio 75.6 2 4.4E-05 48.9 2.9 24 147-170 19-42 (226)
477 PRK12704 phosphodiesterase; Pr 75.6 1.1E+02 0.0024 39.4 18.6 122 923-1056 30-151 (520)
478 PRK11248 tauB taurine transpor 75.6 2 4.3E-05 49.9 2.9 27 147-173 25-51 (255)
479 TIGR02397 dnaX_nterm DNA polym 75.6 4.6 9.9E-05 49.0 6.1 30 145-174 32-61 (355)
480 PRK13541 cytochrome c biogenes 75.5 2.1 4.5E-05 47.5 2.9 27 147-173 24-50 (195)
481 cd03222 ABC_RNaseL_inhibitor T 75.5 2 4.4E-05 47.1 2.7 28 147-174 23-50 (177)
482 KOG0924 mRNA splicing factor A 75.5 2.9 6.2E-05 53.1 4.2 40 132-177 357-396 (1042)
483 PRK12323 DNA polymerase III su 75.5 3.3 7.3E-05 53.6 5.0 56 117-175 7-64 (700)
484 PF10234 Cluap1: Clusterin-ass 75.4 66 0.0014 37.6 14.8 14 665-678 3-16 (267)
485 PRK06620 hypothetical protein; 75.4 3.4 7.4E-05 46.7 4.6 20 150-169 45-64 (214)
486 COG2433 Uncharacterized conser 75.3 1.5E+02 0.0033 38.1 18.7 19 1013-1031 486-504 (652)
487 PRK07994 DNA polymerase III su 75.3 3.6 7.7E-05 53.8 5.3 55 117-175 7-64 (647)
488 PF00448 SRP54: SRP54-type pro 75.3 2.5 5.4E-05 47.1 3.4 28 149-176 1-28 (196)
489 COG1474 CDC6 Cdc6-related prot 75.3 3.1 6.7E-05 50.9 4.5 38 140-177 33-70 (366)
490 PRK07960 fliI flagellum-specif 75.2 5.8 0.00013 49.5 6.8 42 132-173 158-199 (455)
491 PF13173 AAA_14: AAA domain 75.2 2.4 5.3E-05 43.6 3.1 26 149-174 2-27 (128)
492 PF10146 zf-C4H2: Zinc finger- 75.2 28 0.00062 39.8 11.8 65 972-1036 38-102 (230)
493 cd03238 ABC_UvrA The excision 75.2 2.2 4.7E-05 46.8 2.9 24 147-170 19-42 (176)
494 TIGR03689 pup_AAA proteasome A 75.2 5.8 0.00013 50.5 7.0 27 148-174 215-241 (512)
495 TIGR02211 LolD_lipo_ex lipopro 75.1 2.1 4.6E-05 48.3 2.9 26 147-172 29-54 (221)
496 PRK05428 HPr kinase/phosphoryl 75.0 2 4.4E-05 50.8 2.7 24 149-172 146-169 (308)
497 COG1126 GlnQ ABC-type polar am 75.0 2.2 4.7E-05 47.8 2.7 22 147-168 26-47 (240)
498 cd03237 ABC_RNaseL_inhibitor_d 75.0 2.1 4.6E-05 49.4 2.9 24 147-170 23-46 (246)
499 COG3883 Uncharacterized protei 75.0 1.7E+02 0.0038 34.1 21.9 164 877-1051 33-212 (265)
500 PLN02348 phosphoribulokinase 75.0 3.4 7.3E-05 50.6 4.6 39 135-173 35-73 (395)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.7e-243 Score=2255.58 Aligned_cols=1366 Identities=34% Similarity=0.525 Sum_probs=1057.3
Q ss_pred CccccccCcEEEEeCCCCCeEeEEEEEec--CCeEEEE--eCCCcEEEEeCCcccC--CCCCCCCCCcCccccCCCCChH
Q 000423 3 APVNIIVGSHVWVEHPELAWVDGEVFKIS--AEEVHVH--TTNGQTVITNISKVFP--KDTEAPPGGVDDMTKLSYLHEP 76 (1527)
Q Consensus 3 ~~~~~~~g~~vwv~~~~~~w~~~~v~~~~--~~~~~v~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~Dl~~L~~l~E~ 76 (1527)
+..++.+|..||+||.+.+|+.|.|.+.+ ++.++.. ..+|..+.++...+-. .++| ..+++||||.|+|||||
T Consensus 2 ~~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P-~~~~vdDLt~LSyLNEp 80 (1463)
T COG5022 2 STTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLP-KFDGVDDLTELSYLNEP 80 (1463)
T ss_pred CccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCc-cccCchhhhhhhccCcH
Confidence 34578999999999999999999999743 3333322 2455444444432221 1111 35899999999999999
Q ss_pred HHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecC
Q 000423 77 GVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSG 156 (1527)
Q Consensus 77 ~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisG 156 (1527)
+|||||++||.+++||||+|.||||||||+.|| ||++++|+.|++++..+++|||||||++||+.|...++||||||||
T Consensus 81 sVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISG 159 (1463)
T COG5022 81 AVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISG 159 (1463)
T ss_pred HHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEEecCCCCccceeEEe
Q 000423 157 ESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRT 236 (1527)
Q Consensus 157 ESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~Ga~i~t 236 (1527)
||||||||+||+||+|||++++.++....+||++||++||||||||||||+|||||||||||++|.||.+|.|+||+|+|
T Consensus 160 ESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~ 239 (1463)
T COG5022 160 ESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIET 239 (1463)
T ss_pred CCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhh
Confidence 99999999999999999999987776677999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccccccCCCCccceeehhcccC-ChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhchhhccCCHHH
Q 000423 237 YLLERSRVCQISDPERNYHCFYLLCAA-PPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEE 315 (1527)
Q Consensus 237 yLLEksRvv~q~~~ERnfHIFYql~~~-~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~~~~Al~~lg~~~~e 315 (1527)
|||||||||+|+.+|||||||||||++ ++..++.+++..|.+|+||++|+|..++||||+++|..|+.||+++||+.++
T Consensus 240 YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~ee 319 (1463)
T COG5022 240 YLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEE 319 (1463)
T ss_pred hhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHH
Confidence 999999999999999999999999995 5555566777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCCceEeccCChhhHhh
Q 000423 316 QDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVG 395 (1527)
Q Consensus 316 ~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~~a~~ 395 (1527)
|..||+|||||||||||+|..+++ +.+.+.+. ..++.||.|||||+..|.+||++|.|.+++|.|.+|++..||..
T Consensus 320 q~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ 395 (1463)
T COG5022 320 QDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395 (1463)
T ss_pred HHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHH
Confidence 999999999999999999998664 44444443 36999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHHhhhhhhhhhhhhHHHhh
Q 000423 396 SRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYT 475 (1527)
Q Consensus 396 ~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~ 475 (1527)
+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.
T Consensus 396 irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~ 475 (1463)
T COG5022 396 IRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYV 475 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877778999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccccChHHHHHHhhc-CCCcccccchhhccCCCCchHHHHHHHHHHhc--CCCCccCCCCCCCceEEEeccc
Q 000423 476 KEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKPKLSRTSFTISHYAG 552 (1527)
Q Consensus 476 ~EgI~w~~i~f~dn~~~idlie~-~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~f~~p~~~~~~F~I~Hyag 552 (1527)
+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+....|+|+||||
T Consensus 476 kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAg 555 (1463)
T COG5022 476 KEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAG 555 (1463)
T ss_pred HhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecc
Confidence 99999999999999999999997 35699999999999999999999999999986 5688999999999999999999
Q ss_pred eeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHHHHHHHHccCCCeeeeecC
Q 000423 553 EVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVK 632 (1527)
Q Consensus 553 ~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIk 632 (1527)
+|+|+++||++||||++++++++|+.+|+|+||+.||+...... +.++++|+|++||.||++||++|++|+||||||||
T Consensus 556 DVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIk 634 (1463)
T COG5022 556 DVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIK 634 (1463)
T ss_pred cceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeC
Confidence 99999999999999999999999999999999999999544333 34688999999999999999999999999999999
Q ss_pred CCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccCC-----CCchHHHHHHHHhhcCC
Q 000423 633 PNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-----NYDDKVACEKILDKMGL 707 (1527)
Q Consensus 633 PN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-----~~~~~~~~~~il~~~~~ 707 (1527)
||..|+|+.||+.+|++|||||||||+|||+|+|||+||+|+||+.||++|.|..... ..|.+.+|+.||..+.+
T Consensus 635 PN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~i 714 (1463)
T COG5022 635 PNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVI 714 (1463)
T ss_pred CCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999974321 24679999999999877
Q ss_pred C--CceecceEEeeccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000423 708 K--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREA 785 (1527)
Q Consensus 708 ~--~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQk~~R~~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~~~r~~~ 785 (1527)
+ .||+|+||||||+|+++.||++|...++.+++.||+.|||++.|++|.+..+.+..+|...+|++.|+.+..--...
T Consensus 715 d~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~ 794 (1463)
T COG5022 715 DSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWR 794 (1463)
T ss_pred ChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHH
Confidence 6 59999999999999999999999999999999999999999999999999999999999999999998887666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000423 786 AALKIQKNFHSYTARTSYLTARSSAIQLQ-TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCG 864 (1527)
Q Consensus 786 AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQ-s~~Rg~~aRr~l~~lr~~~AA~~IQ~~~R~~~~r~~y~~l~ka~i~iQ~~ 864 (1527)
+++++|..||....|+.|......++.+| ..+|....+...+.....++++.+|+.||....+++|..+.+.++.+|+.
T Consensus 795 ~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~ 874 (1463)
T COG5022 795 LFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSA 874 (1463)
T ss_pred hHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999 66666666666677777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 865 WRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRI 944 (1527)
Q Consensus 865 ~R~~~arkel~~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l 944 (1527)
+|...|++.+..++.+.+++.++...+.+|+.++.++...++.......... .+....++..++..
T Consensus 875 ~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~k---~e~~a~lk~~l~~~----------- 940 (1463)
T COG5022 875 QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFK---TELIARLKKLLNNI----------- 940 (1463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHHH---HHHHHHHHHHhhcc-----------
Confidence 9999999999999999999999999999999999999887664221111111 11112222211110
Q ss_pred HHHHHHHHHHHHhCCCccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHH
Q 000423 945 LKEQEAARKAIEEAPPIVKETPVIV-HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEK 1023 (1527)
Q Consensus 945 ~~E~e~~~~~~ee~~~~~~e~~~l~-~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e 1023 (1527)
.+ ++.+..+ .....+..|..+..+|+....+...-+...+....+..+. ..++....++
T Consensus 941 ---------d~-------~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~----~~el~~~~~~ 1000 (1463)
T COG5022 941 ---------DL-------EEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKA----NSELKNFKKE 1000 (1463)
T ss_pred ---------cc-------cchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccH----HHHHHHHHHH
Confidence 00 0000000 0111344555555555443332222222111111111111 1112222222
Q ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHHHHhhcCCCCcccccCCcccccccCCCCCCCCCCCcccchhccccCCCCCc
Q 000423 1024 VGQLQESMQRLEEKLCNSESE---NQVIRQQALAMSPTGKSLSARPKTLVIQRTPENGNVQNGEMKDVTLAVTSAREPES 1100 (1527)
Q Consensus 1024 ~~~L~~~~~~Leeki~~le~e---n~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1100 (1527)
+.........+.++...++.. +..+....-.. +..............+..... ........+..
T Consensus 1001 l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~----~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~------- 1067 (1463)
T COG5022 1001 LAELSKQYGALQESTKQLKELPVEVAELQSASKII----SSESTELSILKPLQKLKGLLL--LENNQLQARYK------- 1067 (1463)
T ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhh----ccchhhhhccCcccchhhhhh--HHHHHhhhhHh-------
Confidence 222222222222222222221 22221111000 000000000000000000000 00000000000
Q ss_pred cccccc---chhHH---hhhhhHHHHHhhc-cCCCCCCC-ccchHH-HHHHHHhhhhh-hhhhhhHHHHHHHHHHHHHHh
Q 000423 1101 EEKPQK---SLNEK---QQENQDLLIKCVS-QNLGFSRS-KPVAAS-VIYKCLLHWRS-FEVERTTVFDRIIQTIASAIE 1170 (1527)
Q Consensus 1101 ~~~~~~---~l~e~---~~e~~d~Li~~l~-~~~gf~~~-kp~~A~-iif~cl~~w~~-~~~e~~~l~~~ii~~I~~~i~ 1170 (1527)
.....+ ...+. +.+....+.+.+. +++-..+. -+-||. +.+...-+|++ ...+...++...+..+..+..
T Consensus 1068 ~l~~~r~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~ 1147 (1463)
T COG5022 1068 ALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQ 1147 (1463)
T ss_pred hhhhcCcccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhc
Confidence 000000 11111 1122222333222 22222111 111333 33555567776 444555566665666555544
Q ss_pred c---cCCcccceehhhhHHHHHHHHHHHhhhcCCCCCCccccccccchhhhcccccccCCCCCCCcccccCCccCccchh
Q 000423 1171 V---QDNNDVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDL 1247 (1527)
Q Consensus 1171 ~---~~~~~~layWLSN~~~Ll~llq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1527)
. .+-.-.+.||.+|...+++.--- ..+.+.+-.. +..+.+.+ .+..+++
T Consensus 1148 ~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------------------~~~~d~~~---~~s~s~v 1199 (1463)
T COG5022 1148 KLSVLQLELDGLFWEANLEALPSPPPF-------AALSEKRLYQ------------------SALYDEKS---KLSSSEV 1199 (1463)
T ss_pred cccchhccccccccccccccCCCCCch-------hhcchhhhhH------------------hhhhcccc---cccHHHH
Confidence 2 33334668999999987631000 0000000000 00010000 0011111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcc--CCCCcccccccCCCcchhhhhhhhhhhHHHHHHH
Q 000423 1248 RQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLCIQ--APRTSRASLVKGRSQANAVAQQALIAHWQSIVKS 1325 (1527)
Q Consensus 1248 ~~v~~~~p~~~fkqqL~~l~~kiy~~l~~~~~k~l~p~L~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~ 1325 (1527)
...+..+..+..++|..|.... ++.+++...+- ......+++. .++..+..+...+.++++.+
T Consensus 1200 ---------~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~ 1264 (1463)
T COG5022 1200 ---------NDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKFDTPASMSNEKLLSL 1264 (1463)
T ss_pred ---------HHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcccCcccCcHHHHHHH
Confidence 1335778888888999887654 23333321110 0011111111 11122233455678899999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccchHhHhHh
Q 000423 1326 LNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKH 1405 (1527)
Q Consensus 1326 L~~~~~~l~~~~v~~~li~q~f~Qlf~~Ina~lfN~LLlRr~~Cs~s~G~qIr~nls~LE~W~~~~~~~~~~~a~~~L~~ 1405 (1527)
++.+++.++.+.+.+.+....++++..++|+.+||.|..|+.-.+|+.|.++.+|.+.+++||+.++ ...+..+|++
T Consensus 1265 ~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~~ 1341 (1463)
T COG5022 1265 LNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEELEE 1341 (1463)
T ss_pred HHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 4566689999
Q ss_pred HHHHHHHHhccCCCcCCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCccCcHHHHHHHHhhhhc
Q 000423 1406 IRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTE 1470 (1527)
Q Consensus 1406 i~QA~~lLq~~kk~~~~~~~i~~~~C~~Ls~~QI~kIl~~Y~~d~~e~~~Vs~~~i~~v~~~~~~ 1470 (1527)
++||++.+++.++....++++ .+.|.+|+|.||.+|+.+|.+.+++ .++|.+|..+|-.....
T Consensus 1342 l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~~ 1404 (1463)
T COG5022 1342 LIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLIK 1404 (1463)
T ss_pred HHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhhH
Confidence 999999999987777777667 6999999999999999999999998 59999999777555443
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.6e-207 Score=1957.37 Aligned_cols=769 Identities=36% Similarity=0.577 Sum_probs=718.7
Q ss_pred ccccccCcEEEE-------eCCCCCeEeEEEE-EecCCeEEEEe---CCCcEEEEeCCcccCCCCCCCCCCcCccccCCC
Q 000423 4 PVNIIVGSHVWV-------EHPELAWVDGEVF-KISAEEVHVHT---TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSY 72 (1527)
Q Consensus 4 ~~~~~~g~~vwv-------~~~~~~w~~~~v~-~~~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 72 (1527)
..++.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.+++.++.+++||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 346778999998 6789999999999 78899888874 578999999999999998777789999999999
Q ss_pred CChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhcc-CcCCCCchHHHHHHHHHHHHHhcCCCeE
Q 000423 73 LHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGA-QFGELSPHVFAIADVAYRAMINEGKSNS 151 (1527)
Q Consensus 73 l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~-~~~~~~PHifaiA~~Ay~~m~~~~~~Qs 151 (1527)
||||+|||||+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999998 9999999999985 5789999999999999999999999999
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEEecCCCCccc
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISG 231 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~G 231 (1527)
|||||||||||||+||+||+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999987532 2357999999999999999999999999999999999999999999999
Q ss_pred eeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhchhhcc
Q 000423 232 AAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVG 310 (1527)
Q Consensus 232 a~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~~~~Al~~lg 310 (1527)
|+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++|+||+++|.+|+.||++||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCeeEEecCC---CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCCceEecc
Q 000423 311 ISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRT 387 (1527)
Q Consensus 311 ~~~~e~~~i~~ilaaILhLGni~f~~~~~---~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~ 387 (1527)
|+++++.+||+|||||||||||+|.+... .|++.+.+. +...++.||+|||||+++|.++||+|++.++++.+++|
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 345555442 34589999999999999999999999999999999999
Q ss_pred CChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHHhhhhhhhhh
Q 000423 388 LDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVF 467 (1527)
Q Consensus 388 l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf 467 (1527)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987766788999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCCCC-CCCceE
Q 000423 468 KMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL-SRTSFT 546 (1527)
Q Consensus 468 ~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~-~~~~F~ 546 (1527)
+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++.|++|++|.+|+. ....|+
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~ 581 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFV 581 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 467999
Q ss_pred EEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHHHHHHHHccCCCe
Q 000423 547 ISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPH 626 (1527)
Q Consensus 547 I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~h 626 (1527)
|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+......++..+.+|||++||.||+.||++|++|+||
T Consensus 582 I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ph 661 (821)
T PTZ00014 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPH 661 (821)
T ss_pred EEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998754333334466899999999999999999999999
Q ss_pred eeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccCC-CCchHHHHHHHHhhc
Q 000423 627 YIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKVACEKILDKM 705 (1527)
Q Consensus 627 fIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~~ 705 (1527)
||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+..... ..|++++|+.||+.+
T Consensus 662 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~ 741 (821)
T PTZ00014 662 FIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERS 741 (821)
T ss_pred EEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999998875432 358999999999998
Q ss_pred CC--CCceecceEEeeccchHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 706 GL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKL 777 (1527)
Q Consensus 706 ~~--~~~~~G~TkVF~r~~~~~~LE~~R~~~l~---~aa~~IQk~~R~~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~ 777 (1527)
++ +.|++|+||||||+|+++.||.+|.+++. .+++.||++||+|++|++|++.+.|++.||+.|||+++++.
T Consensus 742 ~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 742 GLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999999999999999888764 68889999999999999999999999999999999988764
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.5e-192 Score=1799.48 Aligned_cols=674 Identities=87% Similarity=1.337 Sum_probs=648.5
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000423 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1527)
Q Consensus 62 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 141 (1527)
+|+|||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|++|++++|..|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEE
Q 000423 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1527)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l 221 (1527)
+|.+.++||||||||||||||||++|++|+|||.+++..+....+|+++|+++||||||||||||+|||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555567899999999999999999999999999999999999
Q ss_pred EecCCCCccceeEEeeeccCccccccCCCCccceeehhcccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000423 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1527)
Q Consensus 222 ~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~ 301 (1527)
+||.+|.|+||+|.+|||||||||.|++||||||||||||+++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000423 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1527)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1527)
|+.||+.|||+++++..||+|||||||||||+|....+.|++.+.+..+...+..||+||||+.++|.++|++|++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666655456789999999999999999999999999999
Q ss_pred ceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHHhhh
Q 000423 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 461 (1527)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~ 461 (1527)
+.+++|+++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||||||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCCCCC
Q 000423 462 FNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS 541 (1527)
Q Consensus 462 f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~ 541 (1527)
||+|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHHHHHHHHc
Q 000423 542 RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1527)
Q Consensus 542 ~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~ 621 (1527)
+..|+|+||||+|+|+++||++||||.++++++++|+.|+|++|+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987655544555778999999999999999999
Q ss_pred cCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccCCCCchHHHHHHH
Q 000423 622 STEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKI 701 (1527)
Q Consensus 622 ~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~i 701 (1527)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766566889999999
Q ss_pred HhhcCCCCceecceEEeeccchHHHHHHHHHHHh
Q 000423 702 LDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1527)
Q Consensus 702 l~~~~~~~~~~G~TkVF~r~~~~~~LE~~R~~~l 735 (1527)
|+.+++++|++|+||||||+|+++.||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-190 Score=1751.60 Aligned_cols=752 Identities=64% Similarity=1.011 Sum_probs=723.5
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000423 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1527)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1527)
|+.|+||||.|+|||||+|||||+.||..+.||||+|+||||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEE
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1527)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34578999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEEeeeccCccccccCCCCccceeehhcccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000423 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1527)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f 299 (1527)
+|+||.+|+|+||.|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+++|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995449999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000423 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1527)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1527)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++...++ ++..+|+|||++.+.|..||++|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776555555443 799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhccccc-CCCCCeEEEEecccccccCCCCchhhhhhhhhhhHH
Q 000423 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQ-DPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1527)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1527)
++++|+++++..+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 455689999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000423 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1527)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1527)
||+||+|||++||++|.+|||+|+.|+|.||++|+|+||+ |.|+++||||||++|.++|++|..||++.+.+|++|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHHHHHH
Q 000423 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1527)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~ 618 (1527)
+++++.|+|.||||+|+|++.|||+||||+|++++++++..|+|+|+..+|++....+.+.++++||+++|+.||..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997666655566889999999999999999
Q ss_pred HHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccCCCCchHHHH
Q 000423 619 TLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVAC 698 (1527)
Q Consensus 619 ~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1527)
+|++|+||||||||||+.+.|+.||..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|+...|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHHhhcCCCCceecceEEeeccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 699 EKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLY 778 (1527)
Q Consensus 699 ~~il~~~~~~~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQk~~R~~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~~ 778 (1527)
+.||+.++++.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|.++|++++.||+++||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 779 EQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 824 (1527)
Q Consensus 779 ~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr 824 (1527)
..+ +..||+.||+.+|+|..|+.|...+.+++.+|+.+|++.+|+
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 778999999999999999999999999999999999999998
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-186 Score=1829.27 Aligned_cols=746 Identities=45% Similarity=0.753 Sum_probs=690.7
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEecCCeEEEEeCCCcEEE-EeCCcccCCCCCCCCCCcCccccCCCCChHHHHHHHH
Q 000423 5 VNIIVGSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVI-TNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLA 83 (1527)
Q Consensus 5 ~~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~E~~vL~~L~ 83 (1527)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ ++.++++|+||| .++.++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456677899999999999999999987777999998877766 899999999976 457999999999999999999999
Q ss_pred HhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChh
Q 000423 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKT 163 (1527)
Q Consensus 84 ~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKT 163 (1527)
.||.++.||||+|..||+||||+++| ||+++++++|+|+...+|||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCC---CccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEEecCCCCccceeEEeeecc
Q 000423 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLE 240 (1527)
Q Consensus 164 es~k~im~yla~~~~~~~~~---~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~Ga~i~tyLLE 240 (1527)
|+||.||+|||+|++++... +.+++++|+++||||||||||+|++|||||||||||.|+||..|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 157899999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCccceeehhccc-CChhHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHHHHhchhhccCCHHHHHH
Q 000423 241 RSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGD-PKSFHYLNQSNCYALDGVDDTEEYLATRRAMDIVGISEEEQDA 318 (1527)
Q Consensus 241 ksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~-~~~f~yl~~~~~~~~~~~dd~~~f~~~~~Al~~lg~~~~e~~~ 318 (1527)
||||++|+++||||||||||++ +++.++..|.|.+ +.+|.|+.++.. .++|+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7888999999976 899999999886 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCCceEeccCChhhHhhhhH
Q 000423 319 IFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITRTLDPVAAVGSRD 398 (1527)
Q Consensus 319 i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~~a~~~rd 398 (1527)
||+|+||||||||+.|......+...+.+ ......+|.||||+...|.+++++..+.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~---~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDN---TEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCC---chHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 99999999999999998765445444443 346899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHHhhhhhhhhhhhhHHHhhhcC
Q 000423 399 ALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEE 478 (1527)
Q Consensus 399 alak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~Eg 478 (1527)
||||++|+|||.|||.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999998877778999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHh-cCCCCccCCC--CCCCceEEEecccee
Q 000423 479 INWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK--LSRTSFTISHYAGEV 554 (1527)
Q Consensus 479 I~w~~i~f-~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~p~--~~~~~F~I~Hyag~V 554 (1527)
|.|++|+| .|-|||||||| +|.||+|+|||||++|++||.+|+.||+..| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 68999999999 5569999999999999999999999999999 8999999997 456799999999999
Q ss_pred eeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcc-----------cccCCCCCccchHHHHHHHHHHHHHHccC
Q 000423 555 TYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNST 623 (1527)
Q Consensus 555 ~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t 623 (1527)
.|+++||++||+|++++.++.+|..|++++|+.||++... ..+|++.|.||+..+|.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987211 12344567899999999999999999999
Q ss_pred CCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccC-CCCchHHHHHHHH
Q 000423 624 EPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDDKVACEKIL 702 (1527)
Q Consensus 624 ~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il 702 (1527)
+|||||||.||..|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.|.... +..|.+.+|..|+
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955555433 3467799999999
Q ss_pred hhcCC--CCceecceEEeeccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000423 703 DKMGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIA 757 (1527)
Q Consensus 703 ~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQk~~R~~l~Rk~y~~ 757 (1527)
..+.. .-|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~k 794 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKK 794 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98865 46999999999999999999999999988876666666666666666544
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5.7e-188 Score=1770.13 Aligned_cols=664 Identities=53% Similarity=0.868 Sum_probs=626.3
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000423 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1527)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1527)
|+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||++
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCC--CCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEE
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~--~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~ 220 (1527)
|.++++||||||||||||||||++|+||+|||.++++.. ....+|+++|+++||||||||||||+|||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999987542 234689999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000423 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1527)
Q Consensus 221 l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f 299 (1527)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++|+|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000423 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1527)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1527)
..|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987543 3323322 234799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccC---CCCCeEEEEecccccccCCCCchhhhhhhhhhh
Q 000423 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD---PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1527)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 456 (1527)
++|.++++++++||.++||||||+||++||+|||++||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhc--CCCC
Q 000423 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKR 534 (1527)
Q Consensus 457 kLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~ 534 (1527)
||||+||+|||+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.|+ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 799999999999999999999999999998 8999
Q ss_pred ccCCCCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccc-----------------c
Q 000423 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------------S 597 (1527)
Q Consensus 535 f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 597 (1527)
|.+|+.+...|+|+||||+|+|+++||++||||.++++++++|+.|+++||+.||+.....+ .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532111 0
Q ss_pred CCCCCccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHH
Q 000423 598 KSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1527)
Q Consensus 598 ~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1527)
+..+.+||+++||.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 11256799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCchHHHHHHHHhhcCC--CCceecceEEeeccchHHHHHHHH
Q 000423 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
.||++|+|.......|+++.|+.||+.+.. +.|++|+||||||+|+++.||++|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456889999999999875 589999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.6e-187 Score=1758.05 Aligned_cols=661 Identities=46% Similarity=0.773 Sum_probs=625.8
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000423 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1527)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1527)
|||||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||++
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEE
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1527)
|.++++||||||||||||||||++|++|+|||.+++.. +.|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999998642 46999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000423 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1527)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~ 301 (1527)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCC--CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000423 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1527)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~--~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1527)
|+.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ...++.||+||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 34555554 35799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccC-CCCCeEEEEecccccccCCCCchhhhhhhhhhhHH
Q 000423 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1527)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1527)
+++.+++|++++||.++||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999754 45678999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000423 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1527)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1527)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.|++|++|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccc-cCCCCCccchHHHHHHHHHH
Q 000423 539 KL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1527)
Q Consensus 539 ~~-~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~L~~L 616 (1527)
+. ....|+|+||||+|+|+++||++||||.++++++++|+.|+|++|+.||+.....+ ....+.+||+++||.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754222 12235689999999999999
Q ss_pred HHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccCC--CCch
Q 000423 617 METLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG--NYDD 694 (1527)
Q Consensus 617 m~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1527)
|++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3477
Q ss_pred HHHHHHHHhhcCC--CCceecceEEeeccchHHHHHHHH
Q 000423 695 KVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 695 ~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
+..|+.|++.+.+ ++|++|+||||||++++..||+.|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999875
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.3e-187 Score=1763.62 Aligned_cols=667 Identities=46% Similarity=0.784 Sum_probs=626.8
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000423 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1527)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1527)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++|+.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCC------CCCccHHHHHHhcchHHhhccCCcccCCCCCC
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~------~~~~~ie~~il~snpiLEaFGNAkT~rN~NSS 213 (1527)
|++|.+.++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred CcceEEEEEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCC-CCCccccCCCccccC
Q 000423 214 RFGKFVELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDP-KSFHYLNQSNCYALD 291 (1527)
Q Consensus 214 RfGk~~~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~-~~f~yl~~~~~~~~~ 291 (1527)
|||||++|+||.+|+|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78899999999876 99999999886 478
Q ss_pred CCCcHHHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHH
Q 000423 292 GVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDA 371 (1527)
Q Consensus 292 ~~dd~~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1527)
++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. .++..||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987644555555543 57999999999999999999
Q ss_pred HhhceeeeCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhh
Q 000423 372 LINRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1527)
Q Consensus 372 L~~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 451 (1527)
||+|++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877778999999999999999999999999
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhc
Q 000423 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK 530 (1527)
Q Consensus 452 NyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f-~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~ 530 (1527)
|||||||||+||+|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCc--cCCCCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccc----------cC
Q 000423 531 SNKRF--IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES----------SK 598 (1527)
Q Consensus 531 ~~~~f--~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~ 598 (1527)
+|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+ .+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 4455567899999999999999999999999999999999999999999999997643211 11
Q ss_pred CCCCccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHh
Q 000423 599 SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLH 678 (1527)
Q Consensus 599 ~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 678 (1527)
.++++||+++||.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||||||+++|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 22458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccc-CCCCchHHHHHHHHhhcCCC--CceecceEEeeccchHHHHHHHH
Q 000423 679 RFGVLAPDVL-DGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
||++|+|... ....|.++.|+.||+.++++ +|++|+||||||+|++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998763 33468899999999998764 89999999999999999999876
No 9
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.1e-186 Score=1612.75 Aligned_cols=728 Identities=40% Similarity=0.701 Sum_probs=676.5
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000423 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1527)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1527)
..|++|++-|+.+.|++++.||+.||.++.||||+|+|||+||||+.|+ ||+++.|++|+|..+.+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 4799999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCC-CCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEE
Q 000423 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1527)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~-~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1527)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|+|||||||||||||.||||||||||||
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999875543 2356788999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCC-CCCCCccccCCCccccCCCCcHH
Q 000423 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLG-DPKSFHYLNQSNCYALDGVDDTE 297 (1527)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~-~~~~f~yl~~~~~~~~~~~dd~~ 297 (1527)
.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+. +++.+...|+|. +|..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 788889999996 79999999998 88899999999
Q ss_pred HHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000423 298 EYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 377 (1527)
Q Consensus 298 ~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 377 (1527)
+|..++.||.++||+++|...+|+|+|||||||||+|.++. |++.+... ..+..+|+||++..++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 45544432 47999999999999999999999999
Q ss_pred eeCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccC-----CCCCeEEEEecccccccCCCCchhhhhhh
Q 000423 378 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-----PNSRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1527)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfEQlcIN 452 (1527)
.+++|.+.+++++.||..+||||||++|+|||+|||.+||++|... ......||||||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999643 12358999999999999999999999999
Q ss_pred hhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCC-CchHHHHHHHHHHhcC
Q 000423 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFAQKLYQTFKS 531 (1527)
Q Consensus 453 yaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~-~td~~f~~kl~~~~~~ 531 (1527)
|+||||||.|++-++|.|||||.+|||+|+.|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCccCCC-------CCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccC-CCCCc
Q 000423 532 NKRFIKPK-------LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK-SSKFS 603 (1527)
Q Consensus 532 ~~~f~~p~-------~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~-~~~~~ 603 (1527)
|++|..-+ +.-.+|-|.||||+|+|+|+||++||+|.+..|+-.+|..|++|++++||+.....-.. ..+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 23468999999999999999999999999999999999999999999999965332221 23668
Q ss_pred cchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccc
Q 000423 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 683 (1527)
Q Consensus 604 tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 683 (1527)
|+|++||.|+..||+.|.+.+|+||||||||+.|.|+.||...|.+|.+|.|+||.+|++|+||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC--CCchHHHHHHHHhhcCC-CCceecceEEeeccch-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000423 684 APDVLDG--NYDDKVACEKILDKMGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR 759 (1527)
Q Consensus 684 ~~~~~~~--~~~~~~~~~~il~~~~~-~~~~~G~TkVF~r~~~-~~~LE~~R~~~l~~aa~~IQk~~R~~l~Rk~y~~~r 759 (1527)
++..+.. ..++++.|..|++..+. .++.+|+||||+|.+. +..||..|.+.+...++.||+.||||++|.+|++|+
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876532 34578999999999987 4899999999999875 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000423 760 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLT 805 (1527)
Q Consensus 760 ~aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~ 805 (1527)
++++.|+ |||.+.. ..++..||+.+|++..++.|.+
T Consensus 720 a~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCC
Confidence 9999998 8884432 2456689999999999998864
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=9.6e-186 Score=1745.63 Aligned_cols=662 Identities=45% Similarity=0.776 Sum_probs=626.8
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000423 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1527)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1527)
|||||+.|++|||++|||+|+.||.++.||||+|+||||||||+++| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEE
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1527)
|.++++||||||||||||||||++|++|+|||.++++.. ....|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2356999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000423 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1527)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~ 301 (1527)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000423 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1527)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1527)
|+.||++|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2334443 3579999999999999999999999999998
Q ss_pred ----ceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccC-CCCCeEEEEecccccccCCCCchhhhhhhhhhh
Q 000423 382 ----EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNE 456 (1527)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNE 456 (1527)
|.+++|+++++|.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CCCcccccchhhccCC-CCchHHHHHHHHHHhcCCCC
Q 000423 457 KLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFAQKLYQTFKSNKR 534 (1527)
Q Consensus 457 kLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~-~~~Gil~lLdee~~~p-~~td~~f~~kl~~~~~~~~~ 534 (1527)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHH
Q 000423 535 FIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1527)
Q Consensus 535 f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~ 614 (1527)
|.+|+..+..|+|+||||+|+|+++||++||||.++++++++|++|+|++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999986433222 2256799999999999
Q ss_pred HHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhcccccccc-CCCCc
Q 000423 615 SLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL-DGNYD 693 (1527)
Q Consensus 615 ~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1527)
.||++|++|+||||||||||+.++|+.||.+.|++||||+||||||||+|.|||+|++|.+|++||++|+|... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23468
Q ss_pred hHHHHHHHHhhcCC--CCceecceEEeeccc-hHHHHHHHH
Q 000423 694 DKVACEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1527)
Q Consensus 694 ~~~~~~~il~~~~~--~~~~~G~TkVF~r~~-~~~~LE~~R 731 (1527)
++++|+.||+.+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 89999999999876 489999999999998 699999875
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.2e-185 Score=1739.62 Aligned_cols=656 Identities=48% Similarity=0.829 Sum_probs=615.2
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000423 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1527)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1527)
.+++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++. .+||||||||+.||
T Consensus 7 ~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay 83 (677)
T cd01383 7 LDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAY 83 (677)
T ss_pred ccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999998 99999999999764 46999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEE
Q 000423 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1527)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~ 220 (1527)
+.|..+++||||||||||||||||++|++|+|||.++++ ..|+++|+++||||||||||||+|||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~ 158 (677)
T cd01383 84 NEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIE 158 (677)
T ss_pred HHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEE
Confidence 999999999999999999999999999999999999753 369999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000423 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1527)
Q Consensus 221 l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f 299 (1527)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++|
T Consensus 159 l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f 238 (677)
T cd01383 159 IHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRF 238 (677)
T ss_pred EEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000423 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1527)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1527)
..|+.||+.|||+++++..||+|||||||||||+|.+..+.+.+.+.+ ...+..||+||||+.++|.++||++++.+
T Consensus 239 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 315 (677)
T cd01383 239 HTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHV 315 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEe
Confidence 999999999999999999999999999999999998754333333332 34799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCC-CCCeEEEEecccccccCCCCchhhhhhhhhhhHH
Q 000423 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1527)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1527)
+++.++++++++||..+||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||||
T Consensus 316 ~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkL 395 (677)
T cd01383 316 NNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERL 395 (677)
T ss_pred CCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754 3467999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000423 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1527)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1527)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+|
T Consensus 396 Q~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 475 (677)
T cd01383 396 QQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGE 475 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCC-----cc-c-----ccCCCCCccchH
Q 000423 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPL-----PE-E-----SSKSSKFSSIGS 607 (1527)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~-----~~-~-----~~~~~~~~tv~~ 607 (1527)
+ ...|+|+||||+|+|+++||++||||.++++++++|++|+++++. +|... +. . +.+.++..||++
T Consensus 476 ~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~ 552 (677)
T cd01383 476 R--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGT 552 (677)
T ss_pred C--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHH
Confidence 5 468999999999999999999999999999999999999999876 55421 10 0 011235689999
Q ss_pred HHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccc
Q 000423 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1527)
Q Consensus 608 ~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1527)
+||.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 553 ~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 632 (677)
T cd01383 553 KFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLEN 632 (677)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCchHHHHHHHHhhcCC--CCceecceEEeeccchHHHHHHHH
Q 000423 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
.. ..|++.+|+.||+.+++ ++|++|+||||||+|+++.||+.|
T Consensus 633 ~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 633 IA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 54 35788999999999876 489999999999999999999875
No 12
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=7.2e-185 Score=1735.51 Aligned_cols=661 Identities=41% Similarity=0.728 Sum_probs=618.2
Q ss_pred CCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHH
Q 000423 62 GGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYR 141 (1527)
Q Consensus 62 ~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 141 (1527)
+|||||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|++++.+++||||||||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEE
Q 000423 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEL 221 (1527)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l 221 (1527)
.|..+++||||||||||||||||++|++|+|||.++++. ...|+++|+++||||||||||||+|||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987533 24699999999999999999999999999999999999
Q ss_pred EecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000423 222 QFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYL 300 (1527)
Q Consensus 222 ~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~ 300 (1527)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..+++++|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999999999999999
Q ss_pred HHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCC--CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceee
Q 000423 301 ATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1527)
Q Consensus 301 ~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~--~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1527)
.|+.||+.|||+++++..||+|||||||||||+|..... .+.+.+.+ ...+..||+||||++++|.++|+++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999987532 22333433 3479999999999999999999999999
Q ss_pred eCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHH
Q 000423 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1527)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1527)
+++|.+.+|+++++|.++||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4567999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000423 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1527)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1527)
|++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|+|||++|++|++..|++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCccc---------c--cCCCCCccchH
Q 000423 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE---------S--SKSSKFSSIGS 607 (1527)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~---------~--~~~~~~~tv~~ 607 (1527)
+.+.+.|+|+||||+|+|+++||++||||.++++++++|+.|+|++|+.||+..... + ++..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999753210 0 01124579999
Q ss_pred HHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccc
Q 000423 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1527)
Q Consensus 608 ~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1527)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||||||+|+|||+|++|.+|++||++|+|..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCCCchHHHHHHHHhhcCC--CCceecceEEeeccchHHHHHHHH
Q 000423 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
.....+.+..+..++..+++ +.||+|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44332334455788887765 479999999999999999999876
No 13
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.2e-184 Score=1733.23 Aligned_cols=664 Identities=41% Similarity=0.681 Sum_probs=622.5
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccC-cCCCCchHHHHHHHH
Q 000423 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQ-FGELSPHVFAIADVA 139 (1527)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~-~~~~~PHifaiA~~A 139 (1527)
..++|||+.|++||||+|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++. .+++|||||+||+.|
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~A 84 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVA 84 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999998 99999999999887 789999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEE
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1527)
|++|.++++||||||||||||||||++|+||+|||.+++... ...+|+++|+++||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i 163 (692)
T cd01385 85 YYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 163 (692)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 999999999999999999999999999999999999975332 2357999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000423 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1527)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~ 298 (1527)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+
T Consensus 164 ~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~ 243 (692)
T cd01385 164 QVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE 243 (692)
T ss_pred EEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999888999999999887789999999
Q ss_pred HHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCC---CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhc
Q 000423 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINR 375 (1527)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~---~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r 375 (1527)
|..|+.||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.+ ...+..||.||||++++|.++||++
T Consensus 244 f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~ 320 (692)
T cd01385 244 FERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKK 320 (692)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999987432 33444443 3579999999999999999999999
Q ss_pred eeeeCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCC---CCCeEEEEecccccccCCC-Cchhhhhh
Q 000423 376 VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP---NSRTIIGVLDIYGFESFKL-NSFEQFCI 451 (1527)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfEQlcI 451 (1527)
++.+++|.+++|++++||..+||||||+||++||+|||++||.+|.+.. ....+||||||||||+|+. ||||||||
T Consensus 321 ~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcI 400 (692)
T cd01385 321 RTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCI 400 (692)
T ss_pred eEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhh
Confidence 9999999999999999999999999999999999999999999998643 2468999999999999999 99999999
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcC
Q 000423 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1527)
Q Consensus 452 NyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 531 (1527)
||||||||++||+|||+.||++|.+|||+|..|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.|++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~ 480 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD 480 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCccccc---------CCCCC
Q 000423 532 NKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------KSSKF 602 (1527)
Q Consensus 532 ~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~ 602 (1527)
|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|+||+.||+..+.... ++.+.
T Consensus 481 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~ 560 (692)
T cd01385 481 NKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAA 560 (692)
T ss_pred CCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccC
Confidence 999999988888999999999999999999999999999999999999999999999976432211 11234
Q ss_pred ccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhcc
Q 000423 603 SSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1527)
Q Consensus 603 ~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 682 (1527)
+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|++||++
T Consensus 561 ~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~ 640 (692)
T cd01385 561 PSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRI 640 (692)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchHHHHHHHHhhcCCC--CceecceEEeeccchHHHHHHHHH
Q 000423 683 LAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRA 732 (1527)
Q Consensus 683 l~~~~~~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R~ 732 (1527)
|+|.... +.++.|+.||+.++++ .|++|+||||||+++++.||....
T Consensus 641 L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 641 LLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred hCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 9987432 3467799999998874 899999999999999999998643
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3e-184 Score=1739.23 Aligned_cols=664 Identities=43% Similarity=0.731 Sum_probs=619.8
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000423 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1527)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1527)
.|.++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+|++|++++++.|+++..+++||||||||+.|
T Consensus 2 ~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 81 (717)
T cd01382 2 SKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKA 81 (717)
T ss_pred CCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEE
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1527)
|++|.+.++||||||||||||||||++|+||+|||.+++++ .+|+++|+++||||||||||||+|||||||||||+
T Consensus 82 y~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~ 157 (717)
T cd01382 82 YRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV 157 (717)
T ss_pred HHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEE
Confidence 99999999999999999999999999999999999987542 57999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCC------------
Q 000423 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN------------ 286 (1527)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~------------ 286 (1527)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++|.
T Consensus 158 ~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~ 237 (717)
T cd01382 158 EIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQ 237 (717)
T ss_pred EEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred --------------ccccCCCCcHHHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCC-CCccccccccch
Q 000423 287 --------------CYALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE-ADSSVIKDEKSR 351 (1527)
Q Consensus 287 --------------~~~~~~~dd~~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~-~d~~~~~~~~~~ 351 (1527)
|..++++||+++|..|+.||++|||+++++..||+|||||||||||+|.+... .+.+.+.+ .+.
T Consensus 238 ~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~ 316 (717)
T cd01382 238 ILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSE 316 (717)
T ss_pred ccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCH
Confidence 23467899999999999999999999999999999999999999999987432 23344432 245
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhceee-----eCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 000423 352 FHLNTTAELLKCDAKSLEDALINRVMV-----TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNS 426 (1527)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~~~L~~r~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~ 426 (1527)
..+..||+||||++++|.++|++|++. ++++.+.+|++++||..+||+|||+||++||+|||.+||.++..+. .
T Consensus 317 ~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~ 395 (717)
T cd01382 317 QSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-S 395 (717)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Confidence 689999999999999999999999998 6789999999999999999999999999999999999999997653 5
Q ss_pred CeEEEEecccccccCCCCchhhhhhhhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccc
Q 000423 427 RTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIAL 506 (1527)
Q Consensus 427 ~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~l 506 (1527)
..+||||||||||+|+.|||||||||||||||||+||++||+.||++|.+|||+|++|+|.||++|||||++||.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCCCCchHHHHHHHHHHhcCCCCccCCCCC----------CCceEEEeccceeeeechhhhhhccccchHHHHHH
Q 000423 507 LDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVL 576 (1527)
Q Consensus 507 Ldee~~~p~~td~~f~~kl~~~~~~~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~l 576 (1527)
|||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988877532 35799999999999999999999999999999999
Q ss_pred HhhCCchhhhhcCCCCcccc---cC--CCCCccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHh
Q 000423 577 LTASKCPFVSGLFPPLPEES---SK--SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQL 651 (1527)
Q Consensus 577 l~~S~~~~v~~lf~~~~~~~---~~--~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QL 651 (1527)
|++|+|+||+.||+...... .+ ..++.||+++||.||+.||++|++|+||||||||||+.++|+.||..+|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999998643211 11 12567999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHhhcCCcccchHHHHhhhccccccccCCCCchHHHHHHHHhhcCCC--CceecceEEeeccchHHHHHH
Q 000423 652 RCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDA 729 (1527)
Q Consensus 652 r~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~ 729 (1527)
||+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999986554 358899999999998764 899999999999999999998
Q ss_pred H
Q 000423 730 R 730 (1527)
Q Consensus 730 ~ 730 (1527)
+
T Consensus 715 ~ 715 (717)
T cd01382 715 I 715 (717)
T ss_pred H
Confidence 5
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-181 Score=1570.80 Aligned_cols=790 Identities=40% Similarity=0.674 Sum_probs=713.2
Q ss_pred ccCcEEEEeCCCCCeEeEEEEEecCCeEEEEe--CCCcEEEEeCCcccCCCCCCCCCCcCccccCCCCChHHHHHHHHHh
Q 000423 8 IVGSHVWVEHPELAWVDGEVFKISAEEVHVHT--TNGQTVITNISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAAR 85 (1527)
Q Consensus 8 ~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~E~~vL~~L~~R 85 (1527)
.-|..||++|+.++|+.|.|++++.+.+++.. ..|.+++...+++++...+ ++..+||-|.|-||||+++|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 45889999999999999999999988888865 3577888888888887543 56889999999999999999999999
Q ss_pred hccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhh
Q 000423 86 YELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTET 165 (1527)
Q Consensus 86 y~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes 165 (1527)
|.+|.||||+.+||||||||+.++.+|+++.|..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEEecCCCCccceeEEeeeccCcccc
Q 000423 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNGRISGAAVRTYLLERSRVC 245 (1527)
Q Consensus 166 ~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~Ga~i~tyLLEksRvv 245 (1527)
+|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-|+.|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986554 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCc--------------------------cccCCCCcHHH
Q 000423 246 QISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNC--------------------------YALDGVDDTEE 298 (1527)
Q Consensus 246 ~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~--------------------------~~~~~~dd~~~ 298 (1527)
.|+.+|||||||||||| ++++.+++|.|+.|++|+||+.|-. ..-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 8999999999999999999985411 11223689999
Q ss_pred HHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCC--CCccccccccchHHHHHHHHhcCCCHHHHHHHHhhce
Q 000423 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRV 376 (1527)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~--~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~ 376 (1527)
|..+..||..+|++++|...||+++|||||||||+|++..+ ..+|.+.+ .+...|..+|+|||+|.++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987542 34677765 4567899999999999999999999999
Q ss_pred eeeC-----CceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhh
Q 000423 377 MVTP-----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCI 451 (1527)
Q Consensus 377 ~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcI 451 (1527)
+.+. |..|.+||.+.+|.++||||||++|++||||||.+||.++.-. .+..|||||||.|||.|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 8753 4578999999999999999999999999999999999999653 578899999999999999999999999
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcC
Q 000423 452 NFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKS 531 (1527)
Q Consensus 452 NyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~ 531 (1527)
||+|||||++||+.+++.|||.|.+||++...|+|.|||+||+|||.|..|||+|||||.++|+++++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCC----------CCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccC--C
Q 000423 532 NKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSK--S 599 (1527)
Q Consensus 532 ~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--~ 599 (1527)
|-+..-|+.+ ...|.|+||||.|+|+++.|+|||.|.+...+..|+..|+++||.+||++....+.+ .
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888777643 347999999999999999999999999999999999999999999999985433322 1
Q ss_pred C--CCccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHH
Q 000423 600 S--KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFL 677 (1527)
Q Consensus 600 ~--~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 677 (1527)
+ ++-|||++||.||..||+.|++|..|||||||||..+.|++||...++.||+|+|+...++++..|||+|..|.+.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 2 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCchHHHHHHHHhhcCCC--CceecceEEeeccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000423 678 HRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEF 755 (1527)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQk~~R~~l~Rk~y 755 (1527)
.-|.-.+|..+. ..|++..|+.+...+|++ +|+||.||||||+|.++..+.+........+..|++ +..|+.|.+|
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 999988887655 468999999999999986 799999999999999999999877766666666654 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 756 IALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQ 814 (1527)
Q Consensus 756 ~~~r~aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQ 814 (1527)
.+...++..+-..- .+.. -|..+.+++|+..|||++|+++........++-
T Consensus 793 kk~q~~a~sVIKLk----NkI~----yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~ 843 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLK----NKII----YRAECVLKAQRIARGYLARKRHRPRIAGIRKIN 843 (1259)
T ss_pred HHhhhhhhheeehh----hHHH----HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 88776654433221 1112 244567889999999999999877555444443
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=9.2e-182 Score=1698.37 Aligned_cols=639 Identities=39% Similarity=0.709 Sum_probs=602.3
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000423 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1527)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1527)
++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEE
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1527)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 257999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000423 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVR-EKFKLGDPKSFHYLNQSNCYALDGVD----DT 296 (1527)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~-~~l~L~~~~~f~yl~~~~~~~~~~~d----d~ 296 (1527)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++.+|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999887777775 46
Q ss_pred HHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCC---CCccccccccchHHHHHHHHhcCCCHHHHHHHHh
Q 000423 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALI 373 (1527)
Q Consensus 297 ~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~---~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~ 373 (1527)
++|.+|+.||.+|||+++++..||+|||||||||||+|.+... .+.+.+.+ ..++..||+|||||.++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 22333433 45799999999999999999999
Q ss_pred hceeeeCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCC-----CCeEEEEecccccccCCCCchhh
Q 000423 374 NRVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-----SRTIIGVLDIYGFESFKLNSFEQ 448 (1527)
Q Consensus 374 ~r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfEQ 448 (1527)
++++.++++.+++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986532 35799999999999999999999
Q ss_pred hhhhhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHH
Q 000423 449 FCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQT 528 (1527)
Q Consensus 449 lcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~ 528 (1527)
||||||||||||+||++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++..
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCccCCCCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHH
Q 000423 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1527)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1527)
++ ++.|.+|+.....|+|+||||+|+|+++||++||||.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678899888889999999999999999999999999999999999987 489999
Q ss_pred HHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhcccccccc
Q 000423 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1527)
Q Consensus 609 f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 688 (1527)
||.||++||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CCCCchHHHHHHHHhhcCCCCceecceEEeeccchHHHHHHHH
Q 000423 689 DGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 689 ~~~~~~~~~~~~il~~~~~~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
....+.++.|+.||..++.++|++||||||||+++++.||++|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999875
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3.1e-180 Score=1704.23 Aligned_cols=667 Identities=54% Similarity=0.913 Sum_probs=630.8
Q ss_pred CCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHH
Q 000423 61 PGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAY 140 (1527)
Q Consensus 61 ~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1527)
..+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++++..|+++..+++|||||+||+.||
T Consensus 5 ~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 83 (677)
T smart00242 5 FEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAY 83 (677)
T ss_pred cCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEE
Q 000423 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1527)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~ 220 (1527)
+.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++
T Consensus 84 ~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~ 162 (677)
T smart00242 84 RNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIE 162 (677)
T ss_pred HHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEE
Confidence 99999999999999999999999999999999999986532 23579999999999999999999999999999999999
Q ss_pred EEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000423 221 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEY 299 (1527)
Q Consensus 221 l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f 299 (1527)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 163 l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f 242 (677)
T smart00242 163 IHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEF 242 (677)
T ss_pred EEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcc-ccccccchHHHHHHHHhcCCCHHHHHHHHhhceee
Q 000423 300 LATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSS-VIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1527)
Q Consensus 300 ~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1527)
.+|+.||+.|||+++++.+||+|||||||||||+|....+.+.. .+. +...++.||+||||+.++|.++|+++++.
T Consensus 243 ~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 319 (677)
T smart00242 243 KETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIK 319 (677)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEE
Confidence 99999999999999999999999999999999999875432221 222 34579999999999999999999999999
Q ss_pred eCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHH
Q 000423 379 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 458 (1527)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkL 458 (1527)
+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 320 ~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 320 TGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 99999999999999999999999999999999999999999998767889999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000423 459 QQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKP 538 (1527)
Q Consensus 459 qq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~p 538 (1527)
|++||+|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHHHHH
Q 000423 539 K-LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLM 617 (1527)
Q Consensus 539 ~-~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm 617 (1527)
+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.......+..+.+||+++||.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4 456799999999999999999999999999999999999999999999998754433333467899999999999999
Q ss_pred HHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccccCC-CCchHH
Q 000423 618 ETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKV 696 (1527)
Q Consensus 618 ~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~ 696 (1527)
++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..|+++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875432 346899
Q ss_pred HHHHHHhhcCC--CCceecceEEeeccchHHHHHHHHH
Q 000423 697 ACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1527)
Q Consensus 697 ~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R~ 732 (1527)
.|+.||+.+++ +.|++|+||||||++++..||++|.
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999865 5899999999999999999999873
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-180 Score=1561.48 Aligned_cols=695 Identities=42% Similarity=0.720 Sum_probs=650.3
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000423 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1527)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1527)
...|||||+-|+-++|.+|..||+.||.++.||||+|+|||+||||+.+| +|++..|..|.|+..-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45899999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEE
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1527)
|++|...++|||||||||||||||++||+||+|++.+|+ .+++...|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 3555667889999999999999999999999999999999
Q ss_pred EEEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000423 220 ELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEE 298 (1527)
Q Consensus 220 ~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~ 298 (1527)
||+|+..|..+||+|.+|||||||||.|.++||||||||||++ |+.+.|..||+..|+.|.||+.++|+.++++||.++
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceee
Q 000423 299 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 378 (1527)
Q Consensus 299 f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 378 (1527)
|++|..||+++|+.++||+.||++||+|||||||.|.+. ...+.+.+. ..++-.|.|||||...|++.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999873 223444443 368899999999999999999999987
Q ss_pred e----CCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCC-CCeEEEEecccccccCCCCchhhhhhhh
Q 000423 379 T----PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINF 453 (1527)
Q Consensus 379 ~----~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfEQlcINy 453 (1527)
+ +.+++..||+++||...||||||+||.+||||||++||.++...+. ...+||||||||||+|++||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 5 3578999999999999999999999999999999999999985433 5789999999999999999999999999
Q ss_pred hhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CCCcccccchhhccCC----CCchHHHHHHHHHH
Q 000423 454 TNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFAQKLYQT 528 (1527)
Q Consensus 454 aNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~-~~~Gil~lLdee~~~p----~~td~~f~~kl~~~ 528 (1527)
.||||||.|++-++|.|||||.+|||.|++|+|.||.-|+||||. .|.||+++|||.|.-. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4779999999999754 46799999999999
Q ss_pred hcCCCCccCCCCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccccCCCCCccchHH
Q 000423 529 FKSNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSR 608 (1527)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1527)
+++||+|..- ...|+|+||||+|+||++||.+||||.|..|+++|++.|+++|++.||+...+..+ ..+.+|.|++
T Consensus 489 ~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds-krRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS-KRRPPTAGDK 564 (1106)
T ss_pred hcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc-cCCCCCchhh
Confidence 9999999743 47899999999999999999999999999999999999999999999998654433 3466899999
Q ss_pred HHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhcccccccc
Q 000423 609 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 688 (1527)
Q Consensus 609 f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 688 (1527)
.++|-++|++||..|+||||||||||+.|.|+.||..+|++|+.|+|+-|.|||+|+||.+|..|+.|++||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C-CCCchHHHHHHHHhhcCC--CCceecceEEeeccch-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 689 D-GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIV 764 (1527)
Q Consensus 689 ~-~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~-~~~LE~~R~~~l~~aa~~IQk~~R~~l~Rk~y~~~r~aai~ 764 (1527)
. ...|++.+|+.||+...+ ++||+|.||||.+.+- +..||.+|.......|..||+.||.|++||+|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 246899999999998755 5899999999999864 78999999999999999999999999999999998876654
Q ss_pred H
Q 000423 765 L 765 (1527)
Q Consensus 765 I 765 (1527)
+
T Consensus 725 l 725 (1106)
T KOG0162|consen 725 L 725 (1106)
T ss_pred H
Confidence 3
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.7e-178 Score=1687.79 Aligned_cols=660 Identities=31% Similarity=0.499 Sum_probs=592.0
Q ss_pred cCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000423 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1527)
Q Consensus 64 ~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 143 (1527)
||||+.|++||||+|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEEe
Q 000423 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQF 223 (1527)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f 223 (1527)
..+++||||||||||||||||++|+||+|||.+++..+. ..++ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999864332 1234 57999999999999999999999999999999999
Q ss_pred cCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCC-CccccCCCCcHHHHHH
Q 000423 224 DKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQS-NCYALDGVDDTEEYLA 301 (1527)
Q Consensus 224 ~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~-~~~~~~~~dd~~~f~~ 301 (1527)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.+ .+...+++||+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 78899999999876554333332 2334678999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000423 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1527)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1527)
|+.||++|||+++++..||+|||||||||||+|.... +.+.+.+ .+.++.||+||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 3479999999999999999999998776553
Q ss_pred c-------------eEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCC-----
Q 000423 382 E-------------VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKL----- 443 (1527)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1527)
+ .++.++++.+|.++||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678899999999999999999999999999999998766678999999999999984
Q ss_pred -CchhhhhhhhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCC--------------Ccccccc
Q 000423 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKP--------------GGIIALL 507 (1527)
Q Consensus 444 -NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f-~dn~~~idlie~~~--------------~Gil~lL 507 (1527)
|||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++||||||++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999987655 79999999999865 5999999
Q ss_pred hhhccCCCCchHHHHHHHHHHhcCCCCccCCC------CCCCceEEEeccce--eeeechhhhhhccccc-hHHHHHHHh
Q 000423 508 DEACMFPKSTHETFAQKLYQTFKSNKRFIKPK------LSRTSFTISHYAGE--VTYLADLFLDKNKDYV-VAEHQVLLT 578 (1527)
Q Consensus 508 dee~~~p~~td~~f~~kl~~~~~~~~~f~~p~------~~~~~F~I~Hyag~--V~Y~~~gfleKN~D~~-~~~~~~ll~ 578 (1527)
||||++|+|||++|++||++.|++|++|.+++ .....|+|+||||. |+|+++||+|||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999998887622 12468999999995 9999999999999975 689999999
Q ss_pred hCCchhhhhcCCCCcc-------------ccc-----C-------------CCCCccchHHHHHHHHHHHHHHccCCCee
Q 000423 579 ASKCPFVSGLFPPLPE-------------ESS-----K-------------SSKFSSIGSRFKLQLQSLMETLNSTEPHY 627 (1527)
Q Consensus 579 ~S~~~~v~~lf~~~~~-------------~~~-----~-------------~~~~~tv~~~f~~~L~~Lm~~l~~t~~hf 627 (1527)
+|++++|+.||+.... +.+ + ..+.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999964210 000 0 01345899999999999999999999999
Q ss_pred eeecCCCCCCC----------------------CCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccc
Q 000423 628 IRCVKPNNALR----------------------PAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAP 685 (1527)
Q Consensus 628 IrCIkPN~~k~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~ 685 (1527)
|||||||+.|+ |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999988
Q ss_pred cccC------CCCchHHHHHHHHhhcCC--CCceecceEEeeccchHHHHHHHH
Q 000423 686 DVLD------GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 686 ~~~~------~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
.... ...|++++|+.||+.+++ ++|+||+||||||+|+++.||+.|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6432 235889999999999876 489999999999999999999875
No 20
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=3e-178 Score=1691.53 Aligned_cols=662 Identities=53% Similarity=0.871 Sum_probs=621.4
Q ss_pred CcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHH
Q 000423 63 GVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRA 142 (1527)
Q Consensus 63 ~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1527)
|++||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||++
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEE
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1527)
|.++++||||||||||||||||++|++|+||+.++++. ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 357999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000423 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1527)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~ 301 (1527)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999998899999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCc--cccccccchHHHHHHHHhcCCCHHHHHHHHhhceeee
Q 000423 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADS--SVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVT 379 (1527)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 379 (1527)
++.||++|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.||+||||+.++|.++|+++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543332 3333 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEEEEecccccccCCCCchhhhhhhhhhhHHh
Q 000423 380 PEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQ 459 (1527)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLq 459 (1527)
+++.+++++++++|..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887667889999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCCCCccC-C
Q 000423 460 QHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK-P 538 (1527)
Q Consensus 460 q~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~f~~-p 538 (1527)
|+|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++.|++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998744 4
Q ss_pred CCCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccc-----------cCCCCCccchH
Q 000423 539 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------SKSSKFSSIGS 607 (1527)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------~~~~~~~tv~~ 607 (1527)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+ .+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 4556799999999999999999999999999999999999999999999998632211 11225689999
Q ss_pred HHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhccccccc
Q 000423 608 RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDV 687 (1527)
Q Consensus 608 ~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 687 (1527)
+|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCchHHHHHHHHhhcCC--CCceecceEEeeccchHHHHHHHH
Q 000423 688 LDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1527)
Q Consensus 688 ~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 731 (1527)
.......+..|+.++..+++ +.|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333344459999998876 489999999999999999999865
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=6.8e-170 Score=1634.61 Aligned_cols=653 Identities=50% Similarity=0.877 Sum_probs=579.1
Q ss_pred cCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHH
Q 000423 64 VDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAM 143 (1527)
Q Consensus 64 ~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 143 (1527)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| +|+++++..|+++..+++||||||||+.||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCC-CCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceEEEEE
Q 000423 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQ 222 (1527)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~-~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1527)
.++++||||||||||||||||++|+||+||+.+++... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred ecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000423 223 FDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLA 301 (1527)
Q Consensus 223 f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~~~~dd~~~f~~ 301 (1527)
||.+|.++||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCccccccccchHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q 000423 302 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 381 (1527)
Q Consensus 302 ~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 381 (1527)
++.||++|||+++++.+||+|||||||||||+|....+.+.+.+.+. ..++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998765555555543 359999999999999999999999999999
Q ss_pred ceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCC-CCCeEEEEecccccccCCCCchhhhhhhhhhhHHhh
Q 000423 382 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 460 (1527)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfEQlcINyaNEkLqq 460 (1527)
|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|..||||||||||||||||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999998766 678999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHh-cCCCCccCC
Q 000423 461 HFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKP 538 (1527)
Q Consensus 461 ~f~~~vf~~eq~eY~~EgI~w~~i~f-~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~-~~~~~f~~p 538 (1527)
+|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|++||++|+++|...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999888
Q ss_pred C----CCCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcc--------------c-----
Q 000423 539 K----LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE--------------E----- 595 (1527)
Q Consensus 539 ~----~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~----- 595 (1527)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.... .
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976431 0
Q ss_pred --ccCCCCCccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhhcCCcccch
Q 000423 596 --SSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1527)
Q Consensus 596 --~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~ 673 (1527)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccCC----CCchHHHHHHHHhhcCC--CCceecceEEeec
Q 000423 674 YEFLHRFGVLAPDVLDG----NYDDKVACEKILDKMGL--KGYQIGKTKVFLR 720 (1527)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r 720 (1527)
.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999975532 46899999999999987 6899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=5e-117 Score=1124.11 Aligned_cols=753 Identities=36% Similarity=0.575 Sum_probs=664.4
Q ss_pred CCCCcCccccCCCCChHHHHHHHHHhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHH
Q 000423 60 PPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVA 139 (1527)
Q Consensus 60 ~~~~~~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1527)
...+++||+.|.+++|+.+++||..||..+.||||+|++|++||||+.+|.+|.+..++.|.+++.+++||||||+|+.|
T Consensus 59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~ 138 (1062)
T KOG4229|consen 59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA 138 (1062)
T ss_pred ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhc-CCCCCCCccHHHHHHhcchHHhhccCCcccCCCCCCCcceE
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG-GRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKF 218 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~-~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~ 218 (1527)
|+.|.+...||||+||||||||||++|+++++||+.++ +. ...++++|+.+||+|||||||+|.+||||||||||
T Consensus 139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~----~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~ 214 (1062)
T KOG4229|consen 139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGN----NSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY 214 (1062)
T ss_pred HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCC----CCchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence 99999999999999999999999999999999999998 33 25688999999999999999999999999999999
Q ss_pred EEEEecCCCCccceeEEeeeccCccccccCCCCccceeehhccc-CChhHHhhcCCCCCCCCccccCCCcccc-CCCCcH
Q 000423 219 VELQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYAL-DGVDDT 296 (1527)
Q Consensus 219 ~~l~f~~~g~i~Ga~i~tyLLEksRvv~q~~~ERnfHIFYql~~-~~~~~~~~l~L~~~~~f~yl~~~~~~~~-~~~dd~ 296 (1527)
|++.|...|.|.||.|..||||||||+.|+.+||||||||++++ .+.++++.+.|+.+++|.||+++.+..+ ++.+|.
T Consensus 215 i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~ 294 (1062)
T KOG4229|consen 215 IKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDV 294 (1062)
T ss_pred EEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999 6778999999999999999999999999 999999
Q ss_pred HHHHHHHhchhhccCCHHHHHHHHHHHHHHHhhcCeeEEecC--CCCccccccccchHHHHHHHHhcCCCHHHHHHHHhh
Q 000423 297 EEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIN 374 (1527)
Q Consensus 297 ~~f~~~~~Al~~lg~~~~e~~~i~~ilaaILhLGni~f~~~~--~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~ 374 (1527)
.+|..+..||.++||+.+++..||+++|||||+|||.|.... ..|...+.+ ..++..+|.||+++.+.|.++++.
T Consensus 295 ~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~ 371 (1062)
T KOG4229|consen 295 AQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTA 371 (1062)
T ss_pred HhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhcc
Confidence 999999999999999999999999999999999999997532 234445544 347999999999999999999999
Q ss_pred ceeeeCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCC--CCeEEEEecccccccCCCCchhhhhhh
Q 000423 375 RVMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN--SRTIIGVLDIYGFESFKLNSFEQFCIN 452 (1527)
Q Consensus 375 r~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfEQlcIN 452 (1527)
++.+++++.+..+++.++|.++|||+||.||++||+|||.+||..+..+.. ...+||||||||||+|+.|||||+|||
T Consensus 372 ~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in 451 (1062)
T KOG4229|consen 372 RVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCIN 451 (1062)
T ss_pred cceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654 368999999999999999999999999
Q ss_pred hhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhhccCCCCchHHHHHHHHHHhcCC
Q 000423 453 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSN 532 (1527)
Q Consensus 453 yaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~ 532 (1527)
||||+||++||+|||.+||+||..|+|+|..|+|.||++|+|+|..||.||+.+||||+.+|+++|.+++.|+..+|+.+
T Consensus 452 ~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~ 531 (1062)
T KOG4229|consen 452 LANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSN 531 (1062)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccCCCC-CCCceEEEeccceeeeechhhhhhccccchHHHHHHHhhCCchhhhhcCCCCcccc---------------
Q 000423 533 KRFIKPKL-SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES--------------- 596 (1527)
Q Consensus 533 ~~f~~p~~-~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~--------------- 596 (1527)
..+..|+. ..+.|+|.||||.|.|++.||+|||+|.++.++..++++|.+.++..++...+...
T Consensus 532 ~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~ 611 (1062)
T KOG4229|consen 532 NLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPV 611 (1062)
T ss_pred cccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccc
Confidence 87777765 45699999999999999999999999999999999999999888877664211000
Q ss_pred --------------------------------------------------c-----------------------C-----
Q 000423 597 --------------------------------------------------S-----------------------K----- 598 (1527)
Q Consensus 597 --------------------------------------------------~-----------------------~----- 598 (1527)
. +
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~ 691 (1062)
T KOG4229|consen 612 PLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRL 691 (1062)
T ss_pred cchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhh
Confidence 0 0
Q ss_pred -------------CC--------------C--------------------------------------------------
Q 000423 599 -------------SS--------------K-------------------------------------------------- 601 (1527)
Q Consensus 599 -------------~~--------------~-------------------------------------------------- 601 (1527)
.. +
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 771 (1062)
T KOG4229|consen 692 SSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVR 771 (1062)
T ss_pred hhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccc
Confidence 00 0
Q ss_pred CccchH----------------HHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhccchhHHHHHHhh
Q 000423 602 FSSIGS----------------RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCA 665 (1527)
Q Consensus 602 ~~tv~~----------------~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~ 665 (1527)
...++. ++......++..+....|.|++||+-|..+....|+...|..|+++.|+++..+++..
T Consensus 772 ~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~ 851 (1062)
T KOG4229|consen 772 RERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRS 851 (1062)
T ss_pred cchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheec
Confidence 000111 2223444577777778889999999997778889999999999999999999999999
Q ss_pred cCCcccchHHHHhhhccccccccCCCCchHHHHHHHHhhc--CCCCceecceEEeeccchHHHHHHHH-HHHhhhHHHHH
Q 000423 666 GYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKM--GLKGYQIGKTKVFLRAGQMAELDARR-AEVLGNAARII 742 (1527)
Q Consensus 666 Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~--~~~~~~~G~TkVF~r~~~~~~LE~~R-~~~l~~aa~~I 742 (1527)
+|+..+++.+|...+++..|.... .........+ ..+.++.|++++|+.......++..- .+.....+...
T Consensus 852 ~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k 925 (1062)
T KOG4229|consen 852 LYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFK 925 (1062)
T ss_pred cccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHH
Confidence 999999999999999998873221 1111222222 34689999999999887655444332 22222137788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 743 QRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYE-QLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMV 821 (1527)
Q Consensus 743 Qk~~R~~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~-~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~ 821 (1527)
|++++....|+.|.++..+.+.+| |++++.|+... ......||.-+|..|+.+..+..+...+++.+.+|+.+++..
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 1003 (1062)
T KOG4229|consen 926 QKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPA 1003 (1062)
T ss_pred HHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccch
Confidence 999999999999999999999999 88888877543 234556788899999999999999999999999999998877
Q ss_pred HHHHHH
Q 000423 822 ARNEFR 827 (1527)
Q Consensus 822 aRr~l~ 827 (1527)
.+..+.
T Consensus 1004 ~~~~~~ 1009 (1062)
T KOG4229|consen 1004 YTMIFA 1009 (1062)
T ss_pred hhhhHH
Confidence 665543
No 23
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.93 E-value=2.7e-27 Score=234.57 Aligned_cols=105 Identities=37% Similarity=0.665 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccchHhHhHhHHHHHHHHhccCCCcCCHH
Q 000423 1345 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLN 1424 (1527)
Q Consensus 1345 q~f~Qlf~~Ina~lfN~LLlRr~~Cs~s~G~qIr~nls~LE~W~~~~~~~~~~~a~~~L~~i~QA~~lLq~~kk~~~~~~ 1424 (1527)
|+|+|||+|||+.+||+||.|+++|+|++|+||||||+.||+||++++.+.. ++++|.||+||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999983322 79999999999999999765566665
Q ss_pred HHHhccCCCCCHHHHHHHHhcCccCCCC
Q 000423 1425 EITKELCPVLSIQQLYRISTMYWDDKYG 1452 (1527)
Q Consensus 1425 ~i~~~~C~~Ls~~QI~kIl~~Y~~d~~e 1452 (1527)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 55 7999999999999999999999986
No 24
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.90 E-value=6.9e-23 Score=246.72 Aligned_cols=263 Identities=17% Similarity=0.336 Sum_probs=205.0
Q ss_pred hHHHHHHHHHHHHHHhccCCc-ccceehhhhHHHHHHHHHHHhhhcCCCCCCccccccccchhhhcccccccCCCCCCCc
Q 000423 1155 TTVFDRIIQTIASAIEVQDNN-DVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGL 1233 (1527)
Q Consensus 1155 ~~l~~~ii~~I~~~i~~~~~~-~~layWLSN~~~Ll~llq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 (1527)
..+|.++.+.+..++..+.++ ..|+|||+|.++++|++++- |....+.
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~D-----------------------r~ls~~~-------- 643 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQD-----------------------RDLSRIT-------- 643 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhc-----------------------cchhhee--------
Confidence 678999999999999876555 49999999999999999972 1100000
Q ss_pred ccccCCccCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhccCCCCcccccccCCCcchhhhhh
Q 000423 1234 SFLNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLCIQAPRTSRASLVKGRSQANAVAQQ 1313 (1527)
Q Consensus 1234 ~~~~~~~~~~~~~~~~v~~~~p~~~fkqqL~~l~~kiy~~l~~~~~k~l~p~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1313 (1527)
.+.+ ..|..+|+.+|.-|+..+.-+|++.+...+. ...
T Consensus 644 -----------~~aq------------~vla~~vq~aFr~LV~clqsel~~~~~afLd-en~------------------ 681 (1629)
T KOG1892|consen 644 -----------LDAQ------------DVLAHLVQMAFRYLVHCLQSELNNYMPAFLD-ENS------------------ 681 (1629)
T ss_pred -----------hhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcc------------------
Confidence 0111 2377788889999999999999988654331 000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHhHhhhcc--CCCCCccchhHHhhchHHHHHHHhhc
Q 000423 1314 ALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEYVKAGLAELEQWCYDA 1391 (1527)
Q Consensus 1314 ~~~~~~~~Il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~~Ina~lfN~LLlR--r~~Cs~s~G~qIr~nls~LE~W~~~~ 1391 (1527)
.......++|..|+..+.+|+.|+|...|..|+|+|||||||+.+||+|... -.+|+--.|--|++.|..||.||...
T Consensus 682 ~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErq 761 (1629)
T KOG1892|consen 682 LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQ 761 (1629)
T ss_pred ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 1123456899999999999999999999999999999999999999999998 56999999999999999999999999
Q ss_pred ccccccchHhHhHhHHHHHHHHhccCCCcCCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCccCcHHHHHHHHhhhhcc
Q 000423 1392 TEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTED 1471 (1527)
Q Consensus 1392 ~~~~~~~a~~~L~~i~QA~~lLq~~kk~~~~~~~i~~~~C~~Ls~~QI~kIl~~Y~~d~~e~~~Vs~~~i~~v~~~~~~~ 1471 (1527)
|.+.+.+ ++|..|+||++||++.|....++..| ...|..||..|++.||..|++|+-| .++|.+++..+-.+...-
T Consensus 762 GlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e-~~~p~dlvd~v~r~AE~~ 837 (1629)
T KOG1892|consen 762 GLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDE-PFIPTDLVDNVVRVAENT 837 (1629)
T ss_pred cchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCC-CCCchHHHHHHHHHHHhh
Confidence 9666655 89999999999999986555555555 6689999999999999999999888 589999998874433211
Q ss_pred C-----CCCCCCcccccCCCCCcccccc
Q 000423 1472 S-----NNAVSSSFLLDDDSSIPFTVDD 1494 (1527)
Q Consensus 1472 ~-----~~~~~~~~llD~~~~~pf~~~~ 1494 (1527)
. .++.-.+|--+.+.-.||.+|+
T Consensus 838 ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 838 ADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred hhHhhhccCceeecccCcccccceeecC
Confidence 1 0111223444556666777776
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.40 E-value=1.1e-09 Score=149.27 Aligned_cols=414 Identities=12% Similarity=0.124 Sum_probs=203.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhc--eeeeCCceEeccCChhhHhhhhHHHHHHHHHHHHHHHHHhhhcccccCCCCCeEE
Q 000423 353 HLNTTAELLKCDAKSLEDALINR--VMVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTII 430 (1527)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~L~~r--~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~I 430 (1527)
.+..|-..||+++++....+--- .+..|+=.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceecc
Confidence 46677789999998876554211 1112222222211344444333333322211 1122222222222221 12245
Q ss_pred EEecccccccCCCCchhhhhhhhhhhHHhhhhhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccchhh
Q 000423 431 GVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEA 510 (1527)
Q Consensus 431 giLDi~GFE~f~~NsfEQlcINyaNEkLqq~f~~~vf~~eq~eY~~EgI~w~~i~f~dn~~~idlie~~~~Gil~lLdee 510 (1527)
+-.++.|+..+. .++|=+-|...-...+| .....+...+++|+ .+-+.+|.+++-...=||..
T Consensus 401 ~e~v~k~q~~~q--------~~~~v~alAk~lYerlF-~wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---- 463 (1930)
T KOG0161|consen 401 REWVSKAQNVEQ--------VLFAVEALAKALYERLF-GWLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---- 463 (1930)
T ss_pred chhhhhcchHHH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhc----cccCCcceeeeeccccccCc----
Confidence 566777766443 66777777766556666 46677888899997 45566777766432223322
Q ss_pred ccCCCCchHH----H-HHHHHHHhcCCCCccC-C---CCCCCceEEEeccceeeeechhhhhhccccchHHHHHHH----
Q 000423 511 CMFPKSTHET----F-AQKLYQTFKSNKRFIK-P---KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLL---- 577 (1527)
Q Consensus 511 ~~~p~~td~~----f-~~kl~~~~~~~~~f~~-p---~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll---- 577 (1527)
.|-+. | .+||.+-| +|.-|.. + +--+-.|..-||+-+ -=.+.+-|+|=. .+..+|
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHHH
Confidence 12111 1 13444333 3434432 1 011236777777222 122223333311 333333
Q ss_pred ---hhCCchhhhhcCCCCcccccCCCCCccchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchhHHHHHhhcc
Q 000423 578 ---TASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCG 654 (1527)
Q Consensus 578 ---~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~ 654 (1527)
.+|...|+..|+..-. ++.++|.... +.+....+...+-+.+ |+|.-||-..++..-.+..|+.+|+|+
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 2344455554443210 1222332221 3344555555555555 999999998888888889999999999
Q ss_pred chhHHHHHHhhc---CCc------------ccchHHHHhhhc-------------------cccccccCC--CCch----
Q 000423 655 GVLEAIRISCAG---YPT------------RRTFYEFLHRFG-------------------VLAPDVLDG--NYDD---- 694 (1527)
Q Consensus 655 gvle~iri~~~G---yp~------------r~~~~~F~~ry~-------------------~l~~~~~~~--~~~~---- 694 (1527)
+ .+.|..--.| +|. +-+|.-...+|+ |+.|....+ ..|.
T Consensus 604 ~-~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl 682 (1930)
T KOG0161|consen 604 T-NKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVL 682 (1930)
T ss_pred c-cHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHH
Confidence 9 8877665444 441 111211122222 122221111 1111
Q ss_pred -HHHHHHHHhhcCC--CCc--eecceEEeeccchHHHHHHHHH-HHhhhHHHHH--------------------HHHHHH
Q 000423 695 -KVACEKILDKMGL--KGY--QIGKTKVFLRAGQMAELDARRA-EVLGNAARII--------------------QRQIRT 748 (1527)
Q Consensus 695 -~~~~~~il~~~~~--~~~--~~G~TkVF~r~~~~~~LE~~R~-~~l~~aa~~I--------------------Qk~~R~ 748 (1527)
.-.|..+|+.+.+ .+| +++.+--..|...++....-.. .--..++..| ..-+-+
T Consensus 683 ~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla 762 (1930)
T KOG0161|consen 683 NQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLA 762 (1930)
T ss_pred HHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHH
Confidence 1234444443211 011 1111111112111111111000 0001222222 223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 749 YIARKEFIALRKAAIVLQSYWRGILACKLYEQLR-REAAALKIQKNFHSYTARTSYLTAR 807 (1527)
Q Consensus 749 ~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~~~r-~~~AAi~IQ~~~R~~~~Rr~y~~~r 807 (1527)
.+.-.+=..+..-++.+|+.||||++|+.|.+.+ +..|+.+||+++|.|...+.|.+.+
T Consensus 763 ~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~ 822 (1930)
T KOG0161|consen 763 HLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWR 822 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Confidence 5555566667788899999999999999997655 5567789999999999888887765
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.71 E-value=2.1e-08 Score=110.25 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCC---ccHHHHHHhcchHHhhcc-CCccc
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEG---RTVEQQVLESNPVLEAFG-NAKTV 207 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~---~~ie~~il~snpiLEaFG-NAkT~ 207 (1527)
||+.+..++..|. ++.|+||+..|+||||||+|..- .....+ ..++ .+++..+..++++ +|.|.
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G----------~~~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~ 75 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEG----------KREGAGIIPRTVT-DVIDLMDKGNANRTTAATA 75 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCC----------CCCCCCcchHHHH-HHHHHHhhccccccccccC
Confidence 9999999999998 57999999999999999988431 111111 2233 3778888999999 99999
Q ss_pred CCCCCCCcceEEEEEecCCCCcc
Q 000423 208 RNNNSSRFGKFVELQFDKNGRIS 230 (1527)
Q Consensus 208 rN~NSSRfGk~~~l~f~~~g~i~ 230 (1527)
+|++|||+..+++|++.......
T Consensus 76 ~N~~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 76 MNEHSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred CCCccCcccEEEEEEEEEeecCC
Confidence 99999999999999998655444
No 27
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.41 E-value=3.8e-07 Score=116.82 Aligned_cols=127 Identities=26% Similarity=0.304 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 735 LGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQ 814 (1527)
Q Consensus 735 l~~aa~~IQk~~R~~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQ 814 (1527)
...+|..||+++|+|..|+.|+.+|.-++.||+.+||+..|+.|..+-. + +.+ .|+.|.+. -.+|
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~w--S-v~~--------lek~~lrw----R~k~ 873 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITW--S-VGV--------LEKLILRW----RRKG 873 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheech--h-hhH--------HHHHHHHH----HHhh
Confidence 4578899999999999999999999999999999999999999975421 1 111 11222221 1244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000423 815 TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTAC--SYYKSLKKAAVITQCGWRRRVARRELRNLK 878 (1527)
Q Consensus 815 s~~Rg~~aRr~l~~lr~~~AA~~IQ~~~R~~~~r--~~y~~l~ka~i~iQ~~~R~~~arkel~~Lk 878 (1527)
..+||+..|+..++. +.||+.||..+|.|+.- ..|.++.+|++.||+.+|-+.++..++++.
T Consensus 874 ~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 874 KGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445555444443322 22455555555555444 445555555555555555555555554443
No 28
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.37 E-value=2.5e-06 Score=109.63 Aligned_cols=87 Identities=32% Similarity=0.385 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 783 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 862 (1527)
Q Consensus 783 ~~~AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~l~~lr~~~AA~~IQ~~~R~~~~r~~y~~l~ka~i~iQ 862 (1527)
...+++.||+.+|+|..|+.|...|++++.+|+.+||.++|+ ..+ .+.||+.||+.||++..|++|+..+.+++.+|
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~q 748 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQ 748 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777899999999999999999999999999999999999 333 78999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 000423 863 CGWRRRVARR 872 (1527)
Q Consensus 863 ~~~R~~~ark 872 (1527)
+..|++.+|.
T Consensus 749 s~~r~~~~r~ 758 (862)
T KOG0160|consen 749 SGVRAMLARN 758 (862)
T ss_pred HHHHHHHhcc
Confidence 9999999987
No 29
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.28 E-value=0.00073 Score=89.96 Aligned_cols=129 Identities=22% Similarity=0.140 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 748 TYIARKEFIALRKAAIVLQSYWRGILACKLYEQL-RREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEF 826 (1527)
Q Consensus 748 ~~l~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~~~-r~~~AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~l 826 (1527)
+.+.-.+=..+..+++.||+.|||+..|++|... ++.++...+|..+|-+ .+..+-..-...+.+|+.+|....|+++
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~r~~~ 812 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEY 812 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhcccchHHHhHHHhhHHhHHHhhHHHH
Confidence 4565666666788888889999988888887543 3344444445444444 2223334445678888888888888777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000423 827 RFRKQTKAAIIIE-AYLRRHTACSY--YKSLKKAAVITQCGWRRRVARRELRNLKM 879 (1527)
Q Consensus 827 ~~lr~~~AA~~IQ-~~~R~~~~r~~--y~~l~ka~i~iQ~~~R~~~arkel~~Lk~ 879 (1527)
+... .....+| ..++....+.. -....++++.+|..||...+++.+..|+.
T Consensus 813 ~~~~--~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k 866 (1463)
T COG5022 813 RSYL--ACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKK 866 (1463)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 5432 3444566 34444444332 22335678888888888887777766653
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.13 E-value=6.8e-06 Score=67.52 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCCeEeEEEEEecCCeEEEEeCCCcEEEEeCC
Q 000423 10 GSHVWVEHPELAWVDGEVFKISAEEVHVHTTNGQTVITNIS 50 (1527)
Q Consensus 10 g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~~~~~ 50 (1527)
+.+|||||++++|+.|+|++.+|+.++|.+.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999887754
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.97 E-value=1.3e-05 Score=103.25 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 736 GNAARIIQRQIRTYIARKEFIALRKAAIVL---QSYWRGILACKL---YEQLRREAAALKIQKNFHSYTARTSYLTARSS 809 (1527)
Q Consensus 736 ~~aa~~IQk~~R~~l~Rk~y~~~r~aai~I---Q~~~Rg~laRk~---~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~~r~a 809 (1527)
..+|..||..+|...-++.-.+-...+... +..+=++.+-.. +.......||..||..+|+|+.|+.|...+.-
T Consensus 756 a~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p 835 (975)
T KOG0520|consen 756 AQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQP 835 (975)
T ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHHhhhhhcccCCc
Confidence 356777888888766554433322222222 222222222221 22334567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000423 810 AIQLQTGLRAMVARNEFRFR--------KQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVAR 871 (1527)
Q Consensus 810 ~i~IQs~~Rg~~aRr~l~~l--------r~~~AA~~IQ~~~R~~~~r~~y~~l~ka~i~iQ~~~R~~~ar 871 (1527)
++.||+.+||+..|+.|+.+ +.--++..+|+-+|+++.+....+...|+..+|.++|.+..-
T Consensus 836 ~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 836 IVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred cccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 99999999999999988653 334567789999999999998888888899999999988764
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.38 E-value=0.16 Score=65.02 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHH
Q 000423 1315 LIAHWQSIVKSLNSYLKTMKVNYVPPFL 1342 (1527)
Q Consensus 1315 ~~~~~~~Il~~L~~~~~~l~~~~v~~~l 1342 (1527)
|...+...+..+|+.+..+....++++.
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey 924 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEY 924 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5667888999999999998887766554
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.029 Score=70.19 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 901 LTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQL 935 (1527)
Q Consensus 901 L~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~ 935 (1527)
|+.+|+.++...++.|+++.+++...+.+.+++|+
T Consensus 373 lekqLerQReiE~qrEEerkkeie~rEaar~ElEk 407 (1118)
T KOG1029|consen 373 LEKQLERQREIERQREEERKKEIERREAAREELEK 407 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333334444444455555555555544
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=1 Score=57.10 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=15.1
Q ss_pred cCCCCCccchhHHhhchHHHHHHH
Q 000423 1365 RRECCSFSNGEYVKAGLAELEQWC 1388 (1527)
Q Consensus 1365 Rr~~Cs~s~G~qIr~nls~LE~W~ 1388 (1527)
.++-.-|=-|+=+.-|=-+.--|.
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 356666777776666665555563
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.19 E-value=2.6 Score=59.56 Aligned_cols=6 Identities=0% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHH
Q 000423 521 FAQKLY 526 (1527)
Q Consensus 521 f~~kl~ 526 (1527)
+++.+.
T Consensus 39 ildAi~ 44 (1164)
T TIGR02169 39 IGDAIL 44 (1164)
T ss_pred HHHHHH
Confidence 444443
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.12 E-value=0.088 Score=68.79 Aligned_cols=143 Identities=20% Similarity=0.263 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000423 881 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPP 960 (1527)
Q Consensus 881 a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~ee~~~ 960 (1527)
..++..++..++.|++++.+|....+.++.....+|.....| +.....+|+|+.+.+..-.+|.+...........
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE----~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~ 534 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE----RRQRASLEKQLQEERKARKEEEEKAARALAQAQA 534 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchh
Confidence 345566667777788887777776666555444444433322 2222334444443332211111111111000000
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH-------hhHHHHHHHHHHHHHHHHHHH
Q 000423 961 IVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV-------RNTELVKKLEDTEEKVGQLQE 1029 (1527)
Q Consensus 961 ~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~-------~~~~l~~~L~~~e~e~~~L~~ 1029 (1527)
...+. -+.-.....+|+.|..+|+.++...++++..++.+..++.. +.+.++..|..++++..+|+.
T Consensus 535 ~r~e~--~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 535 TRQEC--AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred ccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00010 11235566777778888877777777777777766643332 234455555555555555544
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=2.5 Score=56.51 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.7
Q ss_pred cchHHHHHHH
Q 000423 721 AGQMAELDAR 730 (1527)
Q Consensus 721 ~~~~~~LE~~ 730 (1527)
.|.+.|||+.
T Consensus 250 ~GmLEYLEDI 259 (1293)
T KOG0996|consen 250 EGMLEYLEDI 259 (1293)
T ss_pred chHHHHHHHH
Confidence 4788888874
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.01 E-value=0.15 Score=65.27 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 872 RELRNLKMAARETGALKEAKDKLEKRVEELTWR 904 (1527)
Q Consensus 872 kel~~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~ 904 (1527)
|++.+-|.++++. ++.+++...++.+..-.
T Consensus 283 rel~raR~e~kea---qe~ke~~k~emad~ad~ 312 (1243)
T KOG0971|consen 283 RELKRARKEAKEA---QEAKERYKEEMADTADA 312 (1243)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4444445555544 44444444444444433
No 39
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.99 E-value=0.00022 Score=94.49 Aligned_cols=266 Identities=14% Similarity=0.044 Sum_probs=173.5
Q ss_pred cchHHHHHHHHHHHHHHccCCCeeeeecCCCCCCCCCcCchh-HHHHHhhccchhHHHHHHhhcCCcccchHHHHhhhcc
Q 000423 604 SIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENA-NIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGV 682 (1527)
Q Consensus 604 tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 682 (1527)
+++..++-++......|-+..+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++++++.
T Consensus 643 ~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1062)
T KOG4229|consen 643 KVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKN 722 (1062)
T ss_pred cccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhccccc
Confidence 355666678888888888999999999999999999999987 8999999999999999999999999999999887774
Q ss_pred ccccccCCCCchHHHHHHHHhhcCCCCceecceEEeeccchHH-----HHHHHHHHHh---------------------h
Q 000423 683 LAPDVLDGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMA-----ELDARRAEVL---------------------G 736 (1527)
Q Consensus 683 l~~~~~~~~~~~~~~~~~il~~~~~~~~~~G~TkVF~r~~~~~-----~LE~~R~~~l---------------------~ 736 (1527)
..-.....+.-...+|..++++-+.+.+..+++++|.+.---. ..|..=...+ .
T Consensus 723 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~ 802 (1062)
T KOG4229|consen 723 SEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKL 802 (1062)
T ss_pred ccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccc
Confidence 4322111111234567778887777888888888887652111 1111000000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 000423 737 NAARIIQRQIRTYIARKEFIAL----RKAAIVLQSYWRGILACKLYEQ-------------------------------- 780 (1527)
Q Consensus 737 ~aa~~IQk~~R~~l~Rk~y~~~----r~aai~IQ~~~Rg~laRk~~~~-------------------------------- 780 (1527)
..+..||+-++....+..+... -...+.+|..|=|...+...+.
T Consensus 803 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~ 882 (1062)
T KOG4229|consen 803 ESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEF 882 (1062)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhe
Confidence 2344556655555544443322 2355566666665443322110
Q ss_pred ------------------------------HhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 781 ------------------------------LRREAA---ALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFR 827 (1527)
Q Consensus 781 ------------------------------~r~~~A---Ai~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~l~ 827 (1527)
+.++.. +...|++++....++.+.++..+.+.+| +++.+.|+.-.
T Consensus 883 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~ 960 (1062)
T KOG4229|consen 883 STLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCP 960 (1062)
T ss_pred eecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCc
Confidence 111111 2345666666677777777777777777 66666665333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000423 828 -FRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVAR 871 (1527)
Q Consensus 828 -~lr~~~AA~~IQ~~~R~~~~r~~y~~l~ka~i~iQ~~~R~~~ar 871 (1527)
......+++-+|..|+.+..+..+...++..+.+|..++...-.
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 1005 (1062)
T KOG4229|consen 961 VAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYT 1005 (1062)
T ss_pred chhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhh
Confidence 23445667778888888888888887778777777776665443
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.99 E-value=0.82 Score=60.78 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCC
Q 000423 1327 NSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECC 1369 (1527)
Q Consensus 1327 ~~~~~~l~~~~v~~~li~q~f~Qlf~~Ina~lfN~LLlRr~~C 1369 (1527)
+.++.++....=.-..-.|=|.-+..+-...-|+.+|-.|.+|
T Consensus 915 ~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~s 957 (1074)
T KOG0250|consen 915 DELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3444433333333333444445555555666677777766655
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.95 E-value=4 Score=57.63 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=3.5
Q ss_pred cccccccC
Q 000423 434 DIYGFESF 441 (1527)
Q Consensus 434 Di~GFE~f 441 (1527)
.|.||-+|
T Consensus 6 ~l~nf~s~ 13 (1164)
T TIGR02169 6 ELENFKSF 13 (1164)
T ss_pred EEeCeeeE
Confidence 34444444
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.5 Score=61.73 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=16.0
Q ss_pred ecCCCCCChhhhHHHHHHHHHHhcC
Q 000423 154 VSGESGAGKTETTKMLMRYLAYLGG 178 (1527)
Q Consensus 154 isGESGaGKTes~k~im~yla~~~~ 178 (1527)
|+|=.||||+- |+.-++++=|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 58999999996 6666666644
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.74 E-value=0.42 Score=62.63 Aligned_cols=67 Identities=9% Similarity=0.156 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000423 982 VDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1527)
Q Consensus 982 ~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L 1048 (1527)
.+.|-..|..++++...||..+..-.+...+|..-|-++..+++-++..+..-+.+|.+|+.....+
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666544444566777777777777777777777777777776654433
No 44
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.66 E-value=0.0024 Score=44.44 Aligned_cols=17 Identities=71% Similarity=1.124 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000423 761 AAIVLQSYWRGILACKL 777 (1527)
Q Consensus 761 aai~IQ~~~Rg~laRk~ 777 (1527)
|++.||++|||+++|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 45
>PRK11637 AmiB activator; Provisional
Probab=96.64 E-value=0.48 Score=59.24 Aligned_cols=22 Identities=14% Similarity=0.456 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 000423 1020 TEEKVGQLQESMQRLEEKLCNS 1041 (1527)
Q Consensus 1020 ~e~e~~~L~~~~~~Leeki~~l 1041 (1527)
.+.++..|+.+.++|+..|.++
T Consensus 231 ~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 231 DQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.59 E-value=0.31 Score=51.46 Aligned_cols=128 Identities=23% Similarity=0.348 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Q 000423 887 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETP 966 (1527)
Q Consensus 887 L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~ee~~~~~~e~~ 966 (1527)
+......++.++.++..+.. .+..++..|+..+..++.+++.+...+..-+. .+++..
T Consensus 12 a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~----~lee~~------- 69 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKE----KLEESE------- 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHH-------
Confidence 34444555555555544432 23456777777777777777766655533222 222210
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 967 VIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1527)
Q Consensus 967 ~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~ 1039 (1527)
......+.|...+..|+.+++..+.++.....++.++....+...+++..++.+...+...+..|+.+..
T Consensus 70 ---~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 70 ---KRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred ---HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1123334666666777777777777777766666666665555666666666666666666665555544
No 47
>PRK11637 AmiB activator; Provisional
Probab=96.58 E-value=0.42 Score=59.82 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000423 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1527)
Q Consensus 1017 L~~~e~e~~~L~~~~~~Leeki~~le~en~~L 1048 (1527)
+..++.++...+..+..|+.+...+......+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555544444444433
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.47 E-value=8 Score=54.68 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=8.6
Q ss_pred HHhhchHHHHHHHhhcc
Q 000423 1376 YVKAGLAELEQWCYDAT 1392 (1527)
Q Consensus 1376 qIr~nls~LE~W~~~~~ 1392 (1527)
.++-.+..++.=+..-+
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45555555555544433
No 49
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.45 E-value=1.1 Score=56.71 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 793 NFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSL 854 (1527)
Q Consensus 793 ~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~l~~lr~~~AA~~IQ~~~R~~~~r~~y~~l 854 (1527)
.+--|+.+.+|.+...++..+=. + +.+. .-+.++.+++|++.|||++|++++..
T Consensus 782 kVn~WLv~sRWkk~q~~a~sVIK-L-----kNkI--~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 782 KVNKWLVRSRWKKSQYGALSVIK-L-----KNKI--IYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHHhHHHHhhhhhhheee-h-----hhHH--HHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 45678888887776544332210 0 1111 12235567789999999999887654
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=1.9 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 884 TGALKEAKDKLEKRVEELTWRLQF 907 (1527)
Q Consensus 884 ~~~L~~~~~~LE~kv~eL~~~l~~ 907 (1527)
-..+......+...+++++.++..
T Consensus 736 ~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 736 FHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555443
No 51
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.44 E-value=0.023 Score=70.72 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 786 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKS 853 (1527)
Q Consensus 786 AAi~IQ~~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~l~~lr~~~AA~~IQ~~~R~~~~r~~y~~ 853 (1527)
-++.||+.||||++|.+|++++++.+.|+ ++|++.. ...+..||..+|++..++.|.+
T Consensus 698 lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~---------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 698 LVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL---------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHhhhhccccCC
Confidence 45556666666666666666666655555 4443211 1223345566666665555543
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.43 E-value=5.7 Score=52.46 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000423 886 ALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE---EKAQEIAKLQDALQAM 933 (1527)
Q Consensus 886 ~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~---~k~~e~~~Lq~~~eeL 933 (1527)
.+...+..|+.++++|..++........+++. ....|.++++.+++..
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888776655444444333 2233444554444443
No 53
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.41 E-value=0.0039 Score=43.38 Aligned_cols=21 Identities=48% Similarity=0.589 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 000423 736 GNAARIIQRQIRTYIARKEFI 756 (1527)
Q Consensus 736 ~~aa~~IQk~~R~~l~Rk~y~ 756 (1527)
+++|++||+.||||++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999984
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.37 E-value=5.5 Score=56.81 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000423 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1527)
Q Consensus 1012 ~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L 1048 (1527)
++...+.+.+.++..+..++..+++++..++.+...+
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454444444555555444444444333
No 55
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.16 E-value=0.12 Score=69.61 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHH----h-hhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 000423 766 QSYWRGILACKLYEQL----R-REAAALKIQKNFHSYTA----RTSYLTARSSAIQLQTGLRAMVARNEFRFRKQ----- 831 (1527)
Q Consensus 766 Q~~~Rg~laRk~~~~~----r-~~~AAi~IQ~~~R~~~~----Rr~y~~~r~a~i~IQs~~Rg~~aRr~l~~lr~----- 831 (1527)
|+..||+..|..++.. + ..-....||..|||++. ...+......++.+|+..||.++|+.+....+
T Consensus 542 qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~ 621 (1401)
T KOG2128|consen 542 QASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDN 621 (1401)
T ss_pred hhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 6666666666555432 1 22344556666666652 22233445556666666666666665543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 832 TKAAIIIEAYLRRHTACSYYKSLK 855 (1527)
Q Consensus 832 ~~AA~~IQ~~~R~~~~r~~y~~l~ 855 (1527)
..+.+.||++.|....|..|+.+.
T Consensus 622 ~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 622 MTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hhhHHHHHHHHHhcccchHHHHHh
Confidence 344555666666666665555543
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.09 E-value=7.5 Score=54.95 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=4.8
Q ss_pred HHHHHhhcCC
Q 000423 698 CEKILDKMGL 707 (1527)
Q Consensus 698 ~~~il~~~~~ 707 (1527)
...+|..+++
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3455555443
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.05 E-value=13 Score=52.85 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 740 RIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILA 774 (1527)
Q Consensus 740 ~~IQk~~R~~l~Rk~y~~~r~aai~IQ~~~Rg~la 774 (1527)
..|..|+|-.-.-..+..+|..+..++..++...+
T Consensus 226 ~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~~ 260 (1201)
T PF12128_consen 226 NDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQA 260 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554445566666666666666554443
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.97 E-value=7.3 Score=49.36 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000423 1020 TEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1527)
Q Consensus 1020 ~e~e~~~L~~~~~~Leeki~~le~en~~L~~ 1050 (1527)
.+..+.....++.+|++++..+..|.++|..
T Consensus 340 ~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 340 FEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444555666777777777777776654
No 59
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.87 E-value=0.0071 Score=72.49 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=43.6
Q ss_pred eCCCCCCCCCCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHH
Q 000423 102 INPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTK 167 (1527)
Q Consensus 102 vNP~~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k 167 (1527)
+|||...| |+...-..++. +.++|-|-| -+.-|..-..||+||++||.|||||+-.-
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiP 80 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIP 80 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCc
Confidence 99999998 88766555543 357776544 35667777889999999999999998643
No 60
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.87 E-value=0.23 Score=67.04 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHH
Q 000423 761 AAIVLQSYWRGILACKLYEQLRREAA---ALKIQKNFHSYTARTSYLTA-------RSSAIQLQTGLRAMV--ARNEFRF 828 (1527)
Q Consensus 761 aai~IQ~~~Rg~laRk~~~~~r~~~A---Ai~IQ~~~R~~~~Rr~y~~~-------r~a~i~IQs~~Rg~~--aRr~l~~ 828 (1527)
.-+..|+..||...|.....+-...+ -.++|+..||+..|..+... -..+..+|+.|||++ +=+....
T Consensus 509 ~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~ 588 (1401)
T KOG2128|consen 509 SLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL 588 (1401)
T ss_pred HHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH
Confidence 33445666666655554333221111 13457777877777655432 235667788888877 3222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHH
Q 000423 829 RKQTKAAIIIEAYLRRHTACSYYKSLK-------KAAVITQCGWRRRVARRELRNLKM 879 (1527)
Q Consensus 829 lr~~~AA~~IQ~~~R~~~~r~~y~~l~-------ka~i~iQ~~~R~~~arkel~~Lk~ 879 (1527)
.-..+.++.+|+..|++..|+.|.+.. .+++.+|+..|...+++.++.|.-
T Consensus 589 ~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 589 DSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 334566777888888888777665543 467778888888887777776653
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.76 E-value=6.4 Score=47.07 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 880 AARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE 917 (1527)
Q Consensus 880 ~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~ 917 (1527)
...+...+......+..++.+++.+++.+...+..++.
T Consensus 66 ~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~ 103 (312)
T PF00038_consen 66 LSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEE 103 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666677776666665555444444
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.74 E-value=17 Score=51.72 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=9.3
Q ss_pred cCcHH-HHHHHHhhhh
Q 000423 1455 SVSSE-VISSMRVLMT 1469 (1527)
Q Consensus 1455 ~Vs~~-~i~~v~~~~~ 1469 (1527)
.||++ ++..|+.++.
T Consensus 1066 ~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1066 ELPSEEYVNALRELLD 1081 (1201)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 46666 7777765544
No 63
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.68 E-value=2.7 Score=46.94 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 977 SLTAEVDSLKALLLSERQSAEEARKA 1002 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~~~le~~ 1002 (1527)
.|+.++..+++..+.+++.+.++++.
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444334444444444433
No 64
>PRK02224 chromosome segregation protein; Provisional
Probab=95.60 E-value=14 Score=50.90 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=6.2
Q ss_pred EeeccchHHH
Q 000423 717 VFLRAGQMAE 726 (1527)
Q Consensus 717 VF~r~~~~~~ 726 (1527)
||++.|.+..
T Consensus 133 ~~i~Qge~~~ 142 (880)
T PRK02224 133 AYVRQGEVNK 142 (880)
T ss_pred eEeeccChHH
Confidence 6677776543
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.47 E-value=1.5 Score=56.77 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000423 970 HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV-------RNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1527)
Q Consensus 970 ~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~-------~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le 1042 (1527)
.++..+...-.++..||.++.+++...-.+..+..++.. ...++.+++.+++.++..+.+.+..-.+++..+.
T Consensus 150 sdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq 229 (617)
T PF15070_consen 150 SDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQ 229 (617)
T ss_pred ccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345555566666677777776666655554444333322 1234455555555555555554444444444444
Q ss_pred HH
Q 000423 1043 SE 1044 (1527)
Q Consensus 1043 ~e 1044 (1527)
.+
T Consensus 230 ~q 231 (617)
T PF15070_consen 230 EQ 231 (617)
T ss_pred HH
Confidence 43
No 66
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.47 E-value=2.2 Score=53.78 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 875 RNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKA 954 (1527)
Q Consensus 875 ~~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~ 954 (1527)
.++....++...|...+..|+.++..|+.+++..+......+++......+ .+.+..-...+.+.+..+..+..++...
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~-~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ-QKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 955 IEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRL 1034 (1527)
Q Consensus 955 ~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~L 1034 (1527)
+.+++..+.. ...+..+...+...++....+++....++...+.+...............+.++..|.+++..+
T Consensus 222 i~~LEedi~~------l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 222 IRELEEDIKT------LTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSA 295 (546)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHH
Q 000423 1035 EEKLCNSESENQVIRQ 1050 (1527)
Q Consensus 1035 eeki~~le~en~~L~~ 1050 (1527)
++.+...+.+...|+.
T Consensus 296 qe~lqaSqq~~~~L~~ 311 (546)
T PF07888_consen 296 QEQLQASQQEAELLRK 311 (546)
T ss_pred HHHHHHHHHHHHHHHH
No 67
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.45 E-value=8.1 Score=46.25 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~ 1002 (1527)
+...++-|+.|+.+|+..+...++.+.+...+
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~q 282 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQ 282 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888887777766653333
No 68
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.45 E-value=15 Score=49.44 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000423 738 AARIIQRQIRTYIA----RKEFIALRKAAIVLQSY 768 (1527)
Q Consensus 738 aa~~IQk~~R~~l~----Rk~y~~~r~aai~IQ~~ 768 (1527)
+.++=|-..|.|++ .-.|.-..+| +.+|-.
T Consensus 179 ~~~lsQD~aR~FL~~~~p~dkYklfmka-T~L~qi 212 (1074)
T KOG0250|consen 179 MFVLSQDAARSFLANSNPKDKYKLFMKA-TQLEQI 212 (1074)
T ss_pred chhhcHHHHHHHHhcCChHHHHHHHHHH-hHHHHH
Confidence 33444666667765 3466655554 334443
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=7.7 Score=48.74 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000423 922 EIAKLQDALQAMQLQVEE 939 (1527)
Q Consensus 922 e~~~Lq~~~eeLe~qlee 939 (1527)
+..+++.+++.+.+.+.+
T Consensus 347 ~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 347 ELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444333
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=95.34 E-value=5.2 Score=54.91 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.3
Q ss_pred EEEecCCCCCChhhhHHHH
Q 000423 151 SILVSGESGAGKTETTKML 169 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~i 169 (1527)
..+|+|++|||||.....|
T Consensus 25 ~~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAI 43 (880)
T ss_pred cEEEEcCCCCCHHHHHHHH
Confidence 3579999999999976533
No 71
>PTZ00014 myosin-A; Provisional
Probab=95.28 E-value=0.036 Score=73.65 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCHHHHH
Q 000423 352 FHLNTTAELLKCDAKSLE 369 (1527)
Q Consensus 352 ~~l~~~a~LLgv~~~~L~ 369 (1527)
..+..|=..||++.++..
T Consensus 332 ~~~~~A~~~lg~s~~e~~ 349 (821)
T PTZ00014 332 EEVMESFDSMGLSESQIE 349 (821)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 356677788999887743
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.27 E-value=4.6 Score=48.72 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQ 1028 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~ 1028 (1527)
+..+++.++.++..++.++...++.+.+++.++.......+++..+..++..++..++
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555555555555554444444434444444444433
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.26 E-value=5.2 Score=48.95 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000423 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1527)
Q Consensus 1012 ~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~ 1046 (1527)
++...+...+.+++.|..+..+|+..|..++.+..
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444455555555565566666666666664444
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=95.13 E-value=21 Score=49.09 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcCCCH
Q 000423 1323 VKSLNSYLKTMKVNYVPP 1340 (1527)
Q Consensus 1323 l~~L~~~~~~l~~~~v~~ 1340 (1527)
...+..+-..++..++++
T Consensus 721 ~~~~~~~~~~~~~~~~~~ 738 (880)
T PRK02224 721 ESMYGDLRAELRQRNVET 738 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.12 E-value=2.9 Score=54.22 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEE 998 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~ 998 (1527)
...+..|..+...++.++..++..+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~ 324 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDE 324 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555555543
No 76
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.07 E-value=27 Score=50.03 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 886 ALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKA 954 (1527)
Q Consensus 886 ~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~ 954 (1527)
.|.....+|..+...|+..+..-+.....+++........++..+++|+..+..++..+.++...++..
T Consensus 763 rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l 831 (1822)
T KOG4674|consen 763 RLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLREL 831 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655555455555556666677777777777777777766665554444433
No 77
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.99 E-value=1.1 Score=54.05 Aligned_cols=104 Identities=18% Similarity=0.294 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 000423 883 ETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIV 962 (1527)
Q Consensus 883 e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~ee~~~~~ 962 (1527)
.+..|+-.+.-||+++++|+.+...+... ..-+.+|+..+++|-.. +-++.-|+.+....++.+...+
T Consensus 332 ~IqdLq~sN~yLe~kvkeLQ~k~~kQqvf--------vDiinkLk~niEeLIed----KY~viLEKnd~~k~lqnLqe~l 399 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKELQMKITKQQVF--------VDIINKLKENIEELIED----KYRVILEKNDIEKTLQNLQEAL 399 (527)
T ss_pred HHHHhhhccHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHHHHHh----HhHhhhhhhhHHHHHHHHHHHH
Confidence 34456677778888888888776544321 12344444444444221 2222233333333332221111
Q ss_pred ccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 963 KET-PVIVHDTEKIESLTAEVDSLKALLLSERQSAEE 998 (1527)
Q Consensus 963 ~e~-~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~ 998 (1527)
... ..+++.....+.|.-|+++++..+..|++++-.
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 110 113334455566777777777777777766554
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=21 Score=48.38 Aligned_cols=45 Identities=31% Similarity=0.317 Sum_probs=21.2
Q ss_pred hHhHhHHHHHHHHhccCCCcCCHHHHHhccC---CCCCHHHHHHHHhcCcc
Q 000423 1401 DELKHIRQAVGFLVINQKPKKTLNEITKELC---PVLSIQQLYRISTMYWD 1448 (1527)
Q Consensus 1401 ~~L~~i~QA~~lLq~~kk~~~~~~~i~~~~C---~~Ls~~QI~kIl~~Y~~ 1448 (1527)
|.|-|..+-|.|-|.+ ++.+|..| ..+. -.||..-++=-|.+|.|
T Consensus 1170 DslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkP 1217 (1293)
T KOG0996|consen 1170 DSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKP 1217 (1293)
T ss_pred ccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCC
Confidence 3444555555555544 34455444 1221 14555555555555554
No 79
>PRK09039 hypothetical protein; Validated
Probab=94.97 E-value=2.7 Score=51.03 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 000423 893 KLEKRVEELTWRLQFE 908 (1527)
Q Consensus 893 ~LE~kv~eL~~~l~~e 908 (1527)
.|+.++.+|..-+..+
T Consensus 57 ~L~~qIa~L~e~L~le 72 (343)
T PRK09039 57 RLNSQIAELADLLSLE 72 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.93 E-value=5.1 Score=45.75 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV 1008 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~ 1008 (1527)
..+.+.|+.|...++....+++..+.++..+..++++
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444444444444433
No 81
>PRK03918 chromosome segregation protein; Provisional
Probab=94.92 E-value=5.5 Score=54.65 Aligned_cols=8 Identities=25% Similarity=1.095 Sum_probs=4.1
Q ss_pred EeeccchH
Q 000423 717 VFLRAGQM 724 (1527)
Q Consensus 717 VF~r~~~~ 724 (1527)
||++.|.+
T Consensus 130 ~~~~Qg~~ 137 (880)
T PRK03918 130 IYIRQGEI 137 (880)
T ss_pred EEEeccch
Confidence 45555544
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.89 E-value=20 Score=47.69 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEE 939 (1527)
Q Consensus 885 ~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee 939 (1527)
.+|...-..+++++.-|++.+++.- +..-....|+..++.+++.+.++.++
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~----enll~lr~eLddleae~~klrqe~~e 223 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKF----ENLLRLRNELDDLEAEISKLRQEIEE 223 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666655555544322 11112223444444555555444443
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.83 E-value=5.9 Score=51.39 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKALLL 990 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~ 990 (1527)
..+.+.+|+.+++.++..+.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555556555555444
No 84
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.70 E-value=33 Score=49.24 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 843 RRHTACSYYKSLKKAAVITQCGWRRRVARRELR--NLKMAARETGALKEAKDKLEKRVEELTWRLQ 906 (1527)
Q Consensus 843 R~~~~r~~y~~l~ka~i~iQ~~~R~~~arkel~--~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~ 906 (1527)
+....+..+..+++.+..|+...+...-.+.|. +++.....++.++.....|+.+-..|+..+.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTIS 720 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777777777766655544344443 3444555666666666666655555554433
No 85
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.69 E-value=0.031 Score=41.08 Aligned_cols=19 Identities=58% Similarity=0.996 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000423 760 KAAIVLQSYWRGILACKLY 778 (1527)
Q Consensus 760 ~aai~IQ~~~Rg~laRk~~ 778 (1527)
.+++.||++|||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.55 E-value=4.5 Score=44.24 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000423 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~ 1051 (1527)
.+..|++.|+..+.++++....+-.+...++++...+..++..++++...+..+.+.+..+..+|-.++..|+.+
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 445555555555555555555555555555555555666666777777777777777777777766666666554
No 87
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.54 E-value=34 Score=48.62 Aligned_cols=30 Identities=40% Similarity=0.647 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000423 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1527)
Q Consensus 1013 l~~~L~~~e~e~~~L~~~~~~Leeki~~le 1042 (1527)
+..++.+++.++..+++.+..++.++.+.+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (1163)
T COG1196 458 LRDRLKELERELAELQEELQRLEKELSSLE 487 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 88
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.45 E-value=0.97 Score=51.94 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 973 EKIESLTAEVDSLKALLLSERQSAEEARK 1001 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~le~~~~~le~ 1001 (1527)
.++..|..++...+....+...++++...
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~r 120 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVER 120 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 89
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.20 E-value=9.7 Score=43.82 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000423 1020 TEEKVGQLQESMQRLEEKLC 1039 (1527)
Q Consensus 1020 ~e~e~~~L~~~~~~Leeki~ 1039 (1527)
++..+..|+..++.|+.++.
T Consensus 195 aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 90
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=5.4 Score=46.02 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000423 970 HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1527)
Q Consensus 970 ~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~l 1041 (1527)
.++..++.+..+...|+..-..+++++..+..-..+.+.....+..+..+.+.-+..+..+...+..+...+
T Consensus 145 aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l 216 (265)
T COG3883 145 ADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAAL 216 (265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555555555555554444444444443333333333333333333333333333433444444444333
No 91
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.98 E-value=0.059 Score=39.61 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 000423 735 LGNAARIIQRQIRTYIARKEFI 756 (1527)
Q Consensus 735 l~~aa~~IQk~~R~~l~Rk~y~ 756 (1527)
..++|+.||+.||||++|++|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999983
No 92
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.95 E-value=0.04 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 93
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.83 E-value=12 Score=48.97 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=18.9
Q ss_pred HhHHHHHHHHhccCCCcCCHHHHHhccCC---CCCHHHHHHHH
Q 000423 1404 KHIRQAVGFLVINQKPKKTLNEITKELCP---VLSIQQLYRIS 1443 (1527)
Q Consensus 1404 ~~i~QA~~lLq~~kk~~~~~~~i~~~~C~---~Ls~~QI~kIl 1443 (1527)
..|+.|+..++.+ ....+++| +|. +=|+.|++.-.
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLI--Vas~EIAAsTaQLVaAS 887 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELI--VASQEIAASTAQLVAAS 887 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHH--HhhhHHHHHHHHHHHHH
Confidence 4566777766654 34455533 232 45666776543
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.64 E-value=33 Score=45.26 Aligned_cols=12 Identities=33% Similarity=0.257 Sum_probs=9.7
Q ss_pred cCCCCCHHHHHH
Q 000423 1430 LCPVLSIQQLYR 1441 (1527)
Q Consensus 1430 ~C~~Ls~~QI~k 1441 (1527)
-++.||+.||++
T Consensus 933 DFS~ls~h~~K~ 944 (980)
T KOG0980|consen 933 DFSSLSLHQLKT 944 (980)
T ss_pred ccccccHHHHHH
Confidence 478899999876
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=26 Score=45.67 Aligned_cols=29 Identities=28% Similarity=0.218 Sum_probs=20.6
Q ss_pred eeeeechhhhhhccccchHHHHHHHhhCC
Q 000423 553 EVTYLADLFLDKNKDYVVAEHQVLLTASK 581 (1527)
Q Consensus 553 ~V~Y~~~gfleKN~D~~~~~~~~ll~~S~ 581 (1527)
.|.|.-..|+-+|-|--..=+..++..|.
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSST 417 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence 48899999999998865555555555443
No 96
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.40 E-value=51 Score=46.67 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.2
Q ss_pred hHHHHhhhc
Q 000423 673 FYEFLHRFG 681 (1527)
Q Consensus 673 ~~~F~~ry~ 681 (1527)
+.+++..++
T Consensus 124 ~~~~l~~~~ 132 (1179)
T TIGR02168 124 IQDLFLDTG 132 (1179)
T ss_pred HHHHHhccC
Confidence 344554444
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.39 E-value=3.5 Score=53.34 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000423 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1527)
Q Consensus 1011 ~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~ 1050 (1527)
.....+++.+..++..+..++..-++...+|..+...+++
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344566666666666666666666666666666665543
No 98
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.33 E-value=1.9 Score=52.79 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000423 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~ 1049 (1527)
..+..+.+|+.+|-.++.++++++..+.-+.+++......-...-..++.|...++++..+......+.++|.+.++
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555666666666666666665444444333322221112223444444455555555555555555555554
No 99
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.19 E-value=18 Score=40.81 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 977 SLTAEVDSLKALLLSERQSAEEARK 1001 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~~~le~ 1001 (1527)
.+.+..+.++.-+.+|++.++.++.
T Consensus 102 qt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3344444444555555555555554
No 100
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.18 E-value=11 Score=45.17 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=5.2
Q ss_pred ccchHHHHh
Q 000423 670 RRTFYEFLH 678 (1527)
Q Consensus 670 r~~~~~F~~ 678 (1527)
+++..+|++
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 455566665
No 101
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=13 Score=46.09 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHH
Q 000423 1013 LVKKLEDTEEKVGQLQESMQRLEE----------KLCNSESENQVIRQQ 1051 (1527)
Q Consensus 1013 l~~~L~~~e~e~~~L~~~~~~Lee----------ki~~le~en~~L~~~ 1051 (1527)
+.++-.++|++...|+..+..|+. ++..++.+..-+.++
T Consensus 168 llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334445667777667666655544 444455555545444
No 102
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.10 E-value=19 Score=42.22 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000423 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1527)
Q Consensus 1013 l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~ 1049 (1527)
+..+++..+..-..|.+++..|.+-+..++...+.++
T Consensus 257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 257 LRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 3344455555556677777788777777777666554
No 103
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.08 E-value=30 Score=44.68 Aligned_cols=44 Identities=34% Similarity=0.335 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 880 AARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEI 923 (1527)
Q Consensus 880 ~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~ 923 (1527)
.+.+.+.|......-..+.++|+..+.-....+..+++...+|.
T Consensus 99 qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~EL 142 (739)
T PF07111_consen 99 QAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQREL 142 (739)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHH
Confidence 33444444333333334455555544444444444444443333
No 104
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.04 E-value=40 Score=46.09 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000423 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEE--KVGQLQESMQRLEEKLCNSESENQVI 1048 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~--e~~~L~~~~~~Leeki~~le~en~~L 1048 (1527)
++..+...++..+.+++....+...++.+++......++...+.+. .-..+..+++.+++++.....|++.+
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555444444443333332211122222222222 22223334444444555555555544
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.02 E-value=14 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 921 QEIAKLQDALQAMQLQVEEANFRI 944 (1527)
Q Consensus 921 ~e~~~Lq~~~eeLe~qlee~~~~l 944 (1527)
.+..+++..+..++.+++++..++
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555555555555544443
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.01 E-value=24 Score=42.54 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=5.3
Q ss_pred ccchHHHHh
Q 000423 670 RRTFYEFLH 678 (1527)
Q Consensus 670 r~~~~~F~~ 678 (1527)
+++..+|++
T Consensus 13 ~isL~~FL~ 21 (325)
T PF08317_consen 13 PISLQDFLN 21 (325)
T ss_pred CcCHHHHHH
Confidence 355666665
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.95 E-value=14 Score=42.28 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEV 1008 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~ 1008 (1527)
...++.++.....|..++..+..+...++++...++.
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555554444444444433
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.88 E-value=28 Score=46.15 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000423 1012 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 1046 (1527)
Q Consensus 1012 ~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~ 1046 (1527)
++.+++++++.++..++.+...+++++..++.+..
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~ 459 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIE 459 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555444444444444444444333
No 109
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.87 E-value=25 Score=41.58 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 000423 1032 QRLEEKLCNSESENQVIRQQ 1051 (1527)
Q Consensus 1032 ~~Leeki~~le~en~~L~~~ 1051 (1527)
.+|-+.+..|..+...|..+
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.86 E-value=27 Score=41.92 Aligned_cols=13 Identities=0% Similarity=0.192 Sum_probs=5.4
Q ss_pred HHHhHHHHHHHHH
Q 000423 1037 KLCNSESENQVIR 1049 (1527)
Q Consensus 1037 ki~~le~en~~L~ 1049 (1527)
++..|+.+...|.
T Consensus 272 Ei~~Lk~~~~~Le 284 (312)
T smart00787 272 EIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 111
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.84 E-value=14 Score=43.24 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDA 1006 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~ 1006 (1527)
+..+..+++|+..++.+++++...+.+.+++...+
T Consensus 133 E~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 44455555666666666655555555544444433
No 112
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.83 E-value=18 Score=39.80 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~ 1002 (1527)
...++.|+.|+.++..+.+.+.++..++-.+
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~ 131 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATE 131 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence 4566677777777777666666666665443
No 113
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.82 E-value=10 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.1
Q ss_pred ccCCCeeeeecCCCCCCCCCc
Q 000423 621 NSTEPHYIRCVKPNNALRPAI 641 (1527)
Q Consensus 621 ~~t~~hfIrCIkPN~~k~p~~ 641 (1527)
..|..+||.|=+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999977665543
No 114
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.82 E-value=0.073 Score=54.50 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=20.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999987754
No 115
>PRK09039 hypothetical protein; Validated
Probab=92.79 E-value=18 Score=44.04 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000423 891 KDKLEKRVEELTWRLQF 907 (1527)
Q Consensus 891 ~~~LE~kv~eL~~~l~~ 907 (1527)
...++.++.+++..+..
T Consensus 76 ~~~l~~~l~~l~~~l~~ 92 (343)
T PRK09039 76 NQDLQDSVANLRASLSA 92 (343)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 34455555555554443
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.65 E-value=4.1 Score=47.93 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000423 980 AEVDSLKALLLSERQSAE 997 (1527)
Q Consensus 980 ~E~~~Lk~~l~~le~~~~ 997 (1527)
.|+..|.+++.+++.+++
T Consensus 234 EEIt~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 117
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.62 E-value=28 Score=41.64 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 1012 ELVKKLEDTEEKVGQLQESMQRLEE 1036 (1527)
Q Consensus 1012 ~l~~~L~~~e~e~~~L~~~~~~Lee 1036 (1527)
+..+++..+|.+...|+.+..+||.
T Consensus 256 ~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 256 ERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554
No 118
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.57 E-value=29 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000423 1013 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1527)
Q Consensus 1013 l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en 1045 (1527)
..+.+.+-|.++..|++....||.++.+++.-.
T Consensus 250 r~e~I~~re~~lq~lEt~q~~leqeva~le~yy 282 (499)
T COG4372 250 RAEQIRERERQLQRLETAQARLEQEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777778888888888888777654
No 119
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.38 E-value=0.092 Score=57.03 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=23.0
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+...+...+|+|.|++|+|||...+.+++++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456778999999999999999999988888764
No 120
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.38 E-value=25 Score=45.69 Aligned_cols=71 Identities=13% Similarity=0.235 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR---------NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~---------~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le 1042 (1527)
..++.+++.+.+.+..++..-++.+..|..++..+.+. .-+..+.++...++|.+...+...|++++..+.
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544322 123344444455555555555555555444433
No 121
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.19 E-value=0.098 Score=53.12 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.14 E-value=62 Score=44.45 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=6.3
Q ss_pred ccchHHHHHHHh
Q 000423 567 DYVVAEHQVLLT 578 (1527)
Q Consensus 567 D~~~~~~~~ll~ 578 (1527)
|+++++++.-+.
T Consensus 241 DYISPEvLqs~~ 252 (1317)
T KOG0612|consen 241 DYISPEVLQSQG 252 (1317)
T ss_pred CccCHHHHHhhc
Confidence 555665554443
No 123
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.14 E-value=44 Score=42.78 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=7.3
Q ss_pred CeEEEEecccccc
Q 000423 427 RTIIGVLDIYGFE 439 (1527)
Q Consensus 427 ~~~IgiLDi~GFE 439 (1527)
.+.+|+|||-|=+
T Consensus 9 ~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 9 VSLGGFLDIQGAV 21 (961)
T ss_pred hhhcccccccccc
Confidence 3456666666644
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.05 E-value=45 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000423 885 GALKEAKDKLEKRVEELTWRLQ 906 (1527)
Q Consensus 885 ~~L~~~~~~LE~kv~eL~~~l~ 906 (1527)
..+++....+++++..|+..+.
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566655554443
No 125
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.00 E-value=24 Score=47.07 Aligned_cols=81 Identities=25% Similarity=0.211 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHH--HHHHHHHHH---HHHHHHH--HHHHhHHH
Q 000423 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED--TEEKVGQLQ---ESMQRLE--EKLCNSES 1043 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~--~e~e~~~L~---~~~~~Le--eki~~le~ 1043 (1527)
-...+.+|..++.....++..+..+++..+++...++-+...+.++|+- .|.+...-- ...+.|| ++|..|+.
T Consensus 118 ~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEa 197 (769)
T PF05911_consen 118 KEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEA 197 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888888777776665444434443322 222221111 1223444 37788888
Q ss_pred HHHHHHHH
Q 000423 1044 ENQVIRQQ 1051 (1527)
Q Consensus 1044 en~~L~~~ 1051 (1527)
|.++|+.=
T Consensus 198 EC~rLr~l 205 (769)
T PF05911_consen 198 ECQRLRAL 205 (769)
T ss_pred HHHHHHHH
Confidence 88888753
No 126
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.82 E-value=0.19 Score=51.35 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.4
Q ss_pred cCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 146 ~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998875
No 127
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.82 E-value=20 Score=38.04 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 991 SERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKL 1038 (1527)
Q Consensus 991 ~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki 1038 (1527)
.+..++.-++.++............+|.++......+...+..|+.+.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 344444444444444444443444444444444444444443333333
No 128
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.78 E-value=63 Score=43.82 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=25.0
Q ss_pred HhhccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhh
Q 000423 84 ARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYK 121 (1527)
Q Consensus 84 ~Ry~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~ 121 (1527)
.||..-.+-|----|+=++-|--.+++-|++++...-+
T Consensus 192 SrYS~~~PstgGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPSTGGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCCCCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 46665555342224566778888888889988866654
No 129
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.78 E-value=0.16 Score=59.03 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999887764
No 130
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.70 E-value=7.8 Score=40.39 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000423 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~ 1051 (1527)
..+..++.+...++.++..++...+.....+...+. ..+.+...|+.++..++.++.+|..+|..|-.+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~----------sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEA----------SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444444443332222 355555566667777777777777777766554
No 131
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.69 E-value=0.12 Score=56.33 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEecCCCCCChhhhHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yl 173 (1527)
+.|+|.|.||||||+.++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999887765
No 132
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.67 E-value=28 Score=39.47 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKAL-----LLSERQSAEEARKACMDAEVR-------NTELVKKLEDTEEKVGQLQESMQRLEEKL 1038 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~-----l~~le~~~~~le~~~~e~~~~-------~~~l~~~L~~~e~e~~~L~~~~~~Leeki 1038 (1527)
..++...|.+|+++|-.+ +.+|+.++.-.+....+++.. .+++.++++..+..+--|+++++.-+++|
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 467777888888877543 333443333333333333333 23344444445555555555666666566
Q ss_pred HhHHHHHHHHH
Q 000423 1039 CNSESENQVIR 1049 (1527)
Q Consensus 1039 ~~le~en~~L~ 1049 (1527)
..++..+..+.
T Consensus 295 q~l~k~~~q~s 305 (330)
T KOG2991|consen 295 QRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHHH
Confidence 65555554443
No 133
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.63 E-value=0.29 Score=55.81 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.6
Q ss_pred hcCCCeEEEecCCCCCChhhhHHHHHHHHHHhcC
Q 000423 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1527)
Q Consensus 145 ~~~~~QsIiisGESGaGKTes~k~im~yla~~~~ 178 (1527)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3477889999999999999999999999976554
No 134
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.56 E-value=0.14 Score=46.83 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.56 E-value=27 Score=39.16 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000423 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLE-DTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~-~~e~e~~~L~~~~~~Leeki~~le~en 1045 (1527)
.+..+..+++++..|+-+.+.+++++..++.+..++....+....++. ....+.--|+..+..|.+.+..-+.+.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777776677777777766666666544333222221 233333334445555544444444433
No 136
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.38 E-value=3.8 Score=46.66 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000423 1015 KKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1527)
Q Consensus 1015 ~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~~~~ 1054 (1527)
..+.-+|..+......++.|+.++..++.|.++..+.+.+
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455677777777778888888888888887777665543
No 137
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.20 E-value=23 Score=43.36 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 000423 851 YKSLKKAAVITQCGWRRRVA 870 (1527)
Q Consensus 851 y~~l~ka~i~iQ~~~R~~~a 870 (1527)
|+.++......|+...++..
T Consensus 304 ~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 304 WRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555555443
No 138
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.18 E-value=0.12 Score=60.54 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999999999884
No 139
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.09 E-value=62 Score=42.42 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000423 1263 LTAFLEKIYGMIRDNLK 1279 (1527)
Q Consensus 1263 L~~l~~kiy~~l~~~~~ 1279 (1527)
|..-++|+-+-+++.++
T Consensus 412 Lq~amekLq~~f~~~~~ 428 (617)
T PF15070_consen 412 LQEAMEKLQSRFMDLME 428 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456666666665553
No 140
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.92 E-value=0.32 Score=50.67 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.....|+++|++|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999988876
No 141
>PRK06696 uridine kinase; Validated
Probab=90.91 E-value=0.28 Score=55.75 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+|+..+.. ..+..--|.|+|.||||||+.|+.+.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555442 3556789999999999999999999998854
No 142
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.76 E-value=0.16 Score=51.81 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred EEecCCCCCChhhhHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla 174 (1527)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999984
No 143
>PRK01156 chromosome segregation protein; Provisional
Probab=90.73 E-value=85 Score=43.36 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHH
Q 000423 1320 QSIVKSLNSYLKTMKVNYVPPFL 1342 (1527)
Q Consensus 1320 ~~Il~~L~~~~~~l~~~~v~~~l 1342 (1527)
...+..|+.+...|...+++..+
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I 754 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMI 754 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHH
Confidence 44566667777777777776633
No 144
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.58 E-value=0.29 Score=60.61 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+++.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 444555666777667889999999999999999988877643
No 145
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.57 E-value=0.21 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 146
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.53 E-value=0.17 Score=56.36 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56899999999999999999988865
No 147
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.39 E-value=0.18 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.5
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~ 175 (1527)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988753
No 148
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.37 E-value=0.21 Score=49.99 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCChhhhHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLM 170 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im 170 (1527)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999976
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.31 E-value=27 Score=45.53 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH-----HHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000423 847 ACSYYKSLKKAAVITQCGWRRR-----VARREL-RNLKMAARETGALKEAKD-----KLEKRVEELTWRLQFEKQLRTNL 915 (1527)
Q Consensus 847 ~r~~y~~l~ka~i~iQ~~~R~~-----~arkel-~~Lk~~a~e~~~L~~~~~-----~LE~kv~eL~~~l~~e~~~~~~l 915 (1527)
|+....+++..+..+....... -....+ ..+.....-...+....+ .++.++..++..+.........+
T Consensus 196 A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 196 AREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHH-------
Q 000423 916 EEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKAL------- 988 (1527)
Q Consensus 916 e~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~------- 988 (1527)
+.+..+..++.++.+++.+-..+.+|..+............+. +.........|..|...++..
T Consensus 276 ------~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~---l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 276 ------DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDF---LEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHccccCchh
Q ss_pred ---HHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000423 989 ---LLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1527)
Q Consensus 989 ---l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~ 1051 (1527)
...+++++.++++.+..............++++.++..+.+++..++++..++......++..
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.26 E-value=0.19 Score=55.84 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988877
No 151
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.21 E-value=0.18 Score=54.80 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.2
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999998765
No 152
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.16 E-value=44 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 000423 1020 TEEKVGQLQESMQRLEEKLCNSES 1043 (1527)
Q Consensus 1020 ~e~e~~~L~~~~~~Leeki~~le~ 1043 (1527)
.+.+...|.+.++.|+++...|..
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776655443
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.12 E-value=34 Score=40.88 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 000423 1019 DTEEKVGQLQESMQRLEEKLCN 1040 (1527)
Q Consensus 1019 ~~e~e~~~L~~~~~~Leeki~~ 1040 (1527)
.+-.|+.-|.+.+..++++..-
T Consensus 193 aLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 193 ALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 154
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.11 E-value=0.22 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.6
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~y 172 (1527)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877764
No 155
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.09 E-value=0.3 Score=58.49 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.7
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+.+...+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455555554 5999999999999999999998854
No 156
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.01 E-value=36 Score=37.96 Aligned_cols=70 Identities=27% Similarity=0.306 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000423 973 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR----NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~----~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le 1042 (1527)
...++|..++..++..+.+.+.++..+++.+.-..+. ...-.++..++..++..|+.++..|..++.+-+
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345667777777777777777777776665443322 122333455666666666666666666655433
No 157
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.92 E-value=0.21 Score=55.43 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~~ 177 (1527)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.73 E-value=43 Score=41.56 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000423 977 SLTAEVDSLKALLLSERQSA 996 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~ 996 (1527)
.++.+...++.++..++..+
T Consensus 207 ~~~~~l~~~~~~l~~~~~~l 226 (423)
T TIGR01843 207 EAQGELGRLEAELEVLKRQI 226 (423)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 159
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.73 E-value=0.4 Score=57.64 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=35.7
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
...|+-..+.++-.|-..+ +........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556555444443332222 2233334445545799999999999999999998875
No 160
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.71 E-value=0.34 Score=56.57 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.8
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 44454322 337999999999999999999988753
No 161
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.65 E-value=0.44 Score=53.78 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
-.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334445444667889999999999999999999988753
No 162
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.62 E-value=53 Score=39.30 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000423 1024 VGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1527)
Q Consensus 1024 ~~~L~~~~~~Leeki~~le~en~~L~~~ 1051 (1527)
++.|..++.-|.+++..++.|..-+++.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777778888887777666553
No 163
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.60 E-value=0.34 Score=51.79 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.5
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998764
No 164
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.50 E-value=0.28 Score=55.00 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.+..-|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888999999999999999887664
No 165
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.42 E-value=40 Score=37.62 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Q 000423 983 DSLKALLLSERQSAEEARKACMDAE 1007 (1527)
Q Consensus 983 ~~Lk~~l~~le~~~~~le~~~~e~~ 1007 (1527)
++|...++.++.++++.++.+..++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.42 E-value=0.23 Score=50.24 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999988877653
No 167
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.24 E-value=0.38 Score=57.43 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=35.5
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.++|+-+...++- +|+-+ ....... .+.+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3567666666553 34422 3343333 3446778889999999999999998876
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.17 E-value=61 Score=40.06 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000423 1017 LEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1527)
Q Consensus 1017 L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~ 1049 (1527)
+.+++.++...+..+++|..+-..|+.+...+.
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444455555544445555554444
No 169
>PRK08233 hypothetical protein; Provisional
Probab=89.15 E-value=0.22 Score=54.09 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla 174 (1527)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999988874
No 170
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.11 E-value=22 Score=44.02 Aligned_cols=10 Identities=0% Similarity=-0.233 Sum_probs=4.6
Q ss_pred HHHhcCCCHH
Q 000423 1332 TMKVNYVPPF 1341 (1527)
Q Consensus 1332 ~l~~~~v~~~ 1341 (1527)
.++.-++|+-
T Consensus 507 sc~R~~~dek 516 (596)
T KOG4360|consen 507 SCRRMISDEK 516 (596)
T ss_pred HHHhhcCchh
Confidence 3444455543
No 171
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.97 E-value=0.23 Score=56.37 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.5
Q ss_pred EEEecCCCCCChhhhHHHH
Q 000423 151 SILVSGESGAGKTETTKML 169 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~i 169 (1527)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987754
No 172
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.97 E-value=18 Score=42.73 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000423 980 AEVDSLKA 987 (1527)
Q Consensus 980 ~E~~~Lk~ 987 (1527)
.|+++|..
T Consensus 255 ~EnEeL~q 262 (306)
T PF04849_consen 255 AENEELQQ 262 (306)
T ss_pred hhHHHHHH
Confidence 33333333
No 173
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.94 E-value=0.26 Score=53.03 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 174
>PTZ00301 uridine kinase; Provisional
Probab=88.92 E-value=0.28 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEecCCCCCChhhhHHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla 174 (1527)
-|-|+|.||||||+.|+.|.+-|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 367999999999999998887664
No 175
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.83 E-value=0.29 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 176
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.78 E-value=69 Score=39.49 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000423 919 KAQEIAKLQDALQAMQLQVE 938 (1527)
Q Consensus 919 k~~e~~~Lq~~~eeLe~qle 938 (1527)
+..|++.|+...++|..++.
T Consensus 342 kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 34456666666666666554
No 177
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.73 E-value=0.31 Score=53.07 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+..-|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999998864
No 178
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.68 E-value=0.66 Score=57.42 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 34444556666666778999999999999999998888753
No 179
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.59 E-value=0.3 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888753
No 180
>PRK06547 hypothetical protein; Provisional
Probab=88.49 E-value=0.59 Score=50.99 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.9
Q ss_pred hcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 145 NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 145 ~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
......-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999988764
No 181
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.45 E-value=0.32 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 182
>PRK07261 topology modulation protein; Provisional
Probab=88.39 E-value=0.33 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999876554
No 183
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=88.36 E-value=1.5 Score=52.38 Aligned_cols=125 Identities=14% Similarity=0.204 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCccch--hHHhhchHHHHHHHhhcc
Q 000423 1315 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNG--EYVKAGLAELEQWCYDAT 1392 (1527)
Q Consensus 1315 ~~~~~~~Il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~~Ina~lfN~LLlRr~~Cs~s~G--~qIr~nls~LE~W~~~~~ 1392 (1527)
+...+.+++.+|.+++... ...+|+.+.+-+....|.+|+..+.+-|+ -.+...++.| .++...+..+|.++.+..
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll-~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLL-SDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT----------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 5678999999999998554 45699999999999999999999998875 5555555554 678888999999998861
Q ss_pred c--ccccchHhHhHhHHHHHHHHhccCCCcCCHHH-----HHhccCCCCCHHHHHHHHhcC
Q 000423 1393 E--EYAGSAWDELKHIRQAVGFLVINQKPKKTLNE-----ITKELCPVLSIQQLYRISTMY 1446 (1527)
Q Consensus 1393 ~--~~~~~a~~~L~~i~QA~~lLq~~kk~~~~~~~-----i~~~~C~~Ls~~QI~kIl~~Y 1446 (1527)
. ...++..++|..++|.+.||... ++++ +...--+.++|..+..||..|
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~-----~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~ 310 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSD-----DWEEYLDPGIRERKYSRVKPEKAIKLLEKL 310 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH-------------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcC-----CHHHHhCccccccccCCCCHHHHHHHHHhc
Confidence 0 23567789999999999999865 3433 433456777887777777665
No 184
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.26 E-value=62 Score=43.26 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCCceEEEeccce--eeeechhhhhh-----ccccchHHHHHHHhhCCchhhhhcCCCC
Q 000423 541 SRTSFTISHYAGE--VTYLADLFLDK-----NKDYVVAEHQVLLTASKCPFVSGLFPPL 592 (1527)
Q Consensus 541 ~~~~F~I~Hyag~--V~Y~~~gfleK-----N~D~~~~~~~~ll~~S~~~~v~~lf~~~ 592 (1527)
.+..|-+.|-+|- |.- .|+.+ +.|.-..+.+..+...+...|..++...
T Consensus 377 ~~~ryy~~H~~GvH~V~L---~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~ 432 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL---PWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTK 432 (717)
T ss_pred CCceEEEEecCccEEEEe---ccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccC
Confidence 4568999999995 444 36552 2322222333334444445666666543
No 185
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.21 E-value=0.39 Score=52.33 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.6
Q ss_pred EEEecCCCCCChhhhHHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla 174 (1527)
++++.|.||.|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 186
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=82 Score=39.58 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhcCCCHH
Q 000423 1325 SLNSYLKTMKVNYVPPF 1341 (1527)
Q Consensus 1325 ~L~~~~~~l~~~~v~~~ 1341 (1527)
++.++.++|+.|..-..
T Consensus 620 qi~tlrtvlkankqtae 636 (772)
T KOG0999|consen 620 QITTLRTVLKANKQTAE 636 (772)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 45556666666654443
No 187
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=88.12 E-value=56 Score=39.73 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=11.6
Q ss_pred HHHHHHhhcCCC---CceecceEEeeccc
Q 000423 697 ACEKILDKMGLK---GYQIGKTKVFLRAG 722 (1527)
Q Consensus 697 ~~~~il~~~~~~---~~~~G~TkVF~r~~ 722 (1527)
+++.|=..++-+ +.-+--+-=|+|+.
T Consensus 69 Air~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 69 AIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred HHHHHHHhcccccCCCcccccchHHHHHH
Confidence 444444444322 23444444466554
No 188
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.10 E-value=0.99 Score=53.32 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.6
Q ss_pred cCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 146 ~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
.+.+.-|-|+|.||||||+.++.+...+...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3566778899999999999999888777643
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.08 E-value=3.6 Score=45.81 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000423 1016 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1527)
Q Consensus 1016 ~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~ 1050 (1527)
.++.+.+|+..|+-+...+++++..++.||..|-+
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777777777777777777776654
No 190
>PRK06762 hypothetical protein; Provisional
Probab=88.04 E-value=0.42 Score=51.39 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 191
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.02 E-value=4.8 Score=45.15 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000423 977 SLTAEVDSLKALLLS 991 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~ 991 (1527)
+|++++++|+.++..
T Consensus 136 ~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 136 GLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 192
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.00 E-value=51 Score=43.13 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 883 ETGALKEAKDKLEKRVEELTWRLQ 906 (1527)
Q Consensus 883 e~~~L~~~~~~LE~kv~eL~~~l~ 906 (1527)
|+..|+..+..|++++.|....++
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e 451 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQE 451 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHH
Confidence 455778888888888777665544
No 193
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.93 E-value=0.4 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
..-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 194
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.85 E-value=0.34 Score=53.44 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=29.9
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 126 GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 126 ~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
+.++|-+.+.-.. +.+. ...|+|+|++|||||++.+.++.++-
T Consensus 8 g~~~~~~~~~l~~----~v~~--g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 8 GTFSPLQAAYLWL----AVEA--RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCHHHHHHHHH----HHhC--CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4455554433332 3333 46899999999999999999888763
No 195
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.85 E-value=0.33 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999988754
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=87.76 E-value=0.39 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla 174 (1527)
+-|+|.|.||||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999887763
No 197
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.72 E-value=0.34 Score=56.41 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.2
Q ss_pred eEEEecCCCCCChhhhHHHH
Q 000423 150 NSILVSGESGAGKTETTKML 169 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~i 169 (1527)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999987654
No 198
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.64 E-value=0.69 Score=55.01 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
...|+|+|..|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 358999999999999999999998864
No 199
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.64 E-value=0.37 Score=48.12 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.5
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHh
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~ 176 (1527)
|.|.|+||.|||..++.+.+++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 200
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.62 E-value=0.44 Score=51.23 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998877
No 201
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.62 E-value=1e+02 Score=40.12 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 834 AAIIIEAYLRRHTACSYYKSLK----KAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEK 909 (1527)
Q Consensus 834 AA~~IQ~~~R~~~~r~~y~~l~----ka~i~iQ~~~R~~~arkel~~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~ 909 (1527)
+...+|.......-.-.+++.. ++++..+..+-....|+.....+..... +.++..-..+++++++..-..+...
T Consensus 61 ~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q~e~~~n~~q~~~ 139 (716)
T KOG4593|consen 61 KSLLMQLEDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQLERNRNQCQANL 139 (716)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHH
Q 000423 910 QLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALL 989 (1527)
Q Consensus 910 ~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l 989 (1527)
+...++..++.....++.....+....+.++++...-.+.+++...-.+....++ .......+..+.....+..
T Consensus 140 ~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke------~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 140 KKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE------LDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH------------HHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Q 000423 990 LSERQSAEE------------ARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE---KLCNSESENQVIRQQ 1051 (1527)
Q Consensus 990 ~~le~~~~~------------le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Lee---ki~~le~en~~L~~~ 1051 (1527)
.++++..+. .-.++.............++.++....++.+++..+.+ -+.-+..|+..|..+
T Consensus 214 ~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqsk 290 (716)
T KOG4593|consen 214 ASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSK 290 (716)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
No 202
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.53 E-value=0.32 Score=50.96 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 203
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.53 E-value=0.32 Score=53.58 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=20.9
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+.|+|+|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999885543
No 204
>PF12846 AAA_10: AAA-like domain
Probab=87.37 E-value=0.44 Score=55.87 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.8
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999888765
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.28 E-value=6.4 Score=44.21 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~ 1050 (1527)
...+..|++|++++++++.+..+..+....+ ++.......+.+.+++++..+|.+++..++.++..++.++..++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~---l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAE---MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655554443322222 222222233334445566666666666666666666666655554
No 206
>PF05729 NACHT: NACHT domain
Probab=87.28 E-value=0.46 Score=50.35 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 589999999999999999998887643
No 207
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.18 E-value=62 Score=45.16 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=5.3
Q ss_pred hHhHhHHHHHHHH
Q 000423 1401 DELKHIRQAVGFL 1413 (1527)
Q Consensus 1401 ~~L~~i~QA~~lL 1413 (1527)
+.+.-++=-+-+|
T Consensus 919 ~ilsNfiSGIiIL 931 (1109)
T PRK10929 919 EIFANFISGLIIL 931 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 208
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=1.1e+02 Score=40.18 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000423 1005 DAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 1054 (1527)
Q Consensus 1005 e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~~~~ 1054 (1527)
.++...++...++++++.....+..+++.+..+...+++|+..|+.+...
T Consensus 570 ~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 570 DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555556666666666777777777766544
No 209
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.15 E-value=49 Score=42.31 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKA 987 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~ 987 (1527)
...++.+++.++..+..
T Consensus 252 l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 252 LDGRIEALEKQLDALRL 268 (498)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555666666655544
No 210
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.06 E-value=0.6 Score=56.94 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.4
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344677889999999999999999999988754
No 211
>PRK00889 adenylylsulfate kinase; Provisional
Probab=87.02 E-value=0.63 Score=50.55 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+...|+|.|.+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 212
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.98 E-value=68 Score=39.75 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 000423 974 KIESLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1527)
Q Consensus 974 ~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~ 1007 (1527)
.+...+.+...++.++.+++.++..++.++.+++
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 230 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555566555555555555544443
No 213
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.98 E-value=57 Score=37.26 Aligned_cols=28 Identities=14% Similarity=0.516 Sum_probs=18.6
Q ss_pred cchhHHHHHHh----hcCCcccchHHHHhhhc
Q 000423 654 GGVLEAIRISC----AGYPTRRTFYEFLHRFG 681 (1527)
Q Consensus 654 ~gvle~iri~~----~Gyp~r~~~~~F~~ry~ 681 (1527)
+|..+.+++.. -.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 35555555543 36899999999886544
No 214
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.97 E-value=18 Score=39.94 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000423 1016 KLEDTEEKVGQLQESMQRLEEKLCNSES 1043 (1527)
Q Consensus 1016 ~L~~~e~e~~~L~~~~~~Leeki~~le~ 1043 (1527)
.+........++++..+.+.+.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555544433
No 215
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.89 E-value=0.41 Score=58.09 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.6
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999998874
No 216
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=86.86 E-value=31 Score=37.91 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKAC 1003 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~ 1003 (1527)
..+++.+..+++..+.--.+...++++...++
T Consensus 59 EE~~e~~e~qLkEAk~iaE~adrK~eEVarkL 90 (205)
T KOG1003|consen 59 EEKMEAQEAQLKEAKHIAEKADRKYEEVARKL 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443344444444433333
No 217
>PLN03025 replication factor C subunit; Provisional
Probab=86.85 E-value=0.74 Score=55.25 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=40.0
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 117 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.++|+-..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||..++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566666555554443322 2355666666667899999999999999999998874
No 218
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.76 E-value=0.35 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEecCCCCCChhhhHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla 174 (1527)
|++.|.||||||+.++.+-+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68899999999999999988873
No 219
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.71 E-value=0.5 Score=57.16 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45799999999999999999888763
No 220
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.70 E-value=0.41 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.6
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 221
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.61 E-value=1.1 Score=55.01 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.6
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.++|+-..+.++- +|+-.. .+++.. .+-+++++++|+.|+|||+.++.+.+.+-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4677766666654 554433 444444 45689999999999999999999999885
No 222
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.61 E-value=77 Score=37.63 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhHH
Q 000423 1027 LQESMQRLEEKLCNSE 1042 (1527)
Q Consensus 1027 L~~~~~~Leeki~~le 1042 (1527)
|+..+..|+.+-..|+
T Consensus 183 L~Kqm~~l~~eKr~Lq 198 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 223
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=86.55 E-value=15 Score=46.99 Aligned_cols=169 Identities=16% Similarity=0.196 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhh-hhccCCCCcccccccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHhcC
Q 000423 1259 FKQQLTAFLEKIYGMIRDNLKKDISPLLG-LCIQAPRTSRASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTMKVNY 1337 (1527)
Q Consensus 1259 fkqqL~~l~~kiy~~l~~~~~k~l~p~L~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~L~~~~~~l~~~~ 1337 (1527)
|..-.......|=..+++.++..+.|... ..=... ... +.....+++......+..|...+..|+..
T Consensus 307 y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~--------~~~---~~~~~~~~S~el~~~L~~L~~~L~~L~~~- 374 (494)
T PF04437_consen 307 YEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSI--------ESP---SDSSPLSPSPELVPALSLLRSRLSFLERS- 374 (494)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT------------------------GGGHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCc--------ccc---cccccCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 43334445555556666666666666643 110000 000 00111234566778899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhHHHhHhhhccCCCCCccchhHHhhchHHHHHHHhhcccccccchHhHhHhHHHHHHHHhccC
Q 000423 1338 VPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQ 1417 (1527)
Q Consensus 1338 v~~~li~q~f~Qlf~~Ina~lfN~LLlRr~~Cs~s~G~qIr~nls~LE~W~~~~~~~~~~~a~~~L~~i~QA~~lLq~~k 1417 (1527)
+++.....+..++..-|+-.++++++++. -.|-.-|.|+.+=+ +.|+.--+ .+....-..+..|.+|+.||-++.
T Consensus 375 L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~---~~L~~~~~-~~~~~p~~~f~~l~E~~~LL~L~~ 449 (494)
T PF04437_consen 375 LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDM---RALFSVFS-QYTPRPEAFFKRLREACKLLNLPY 449 (494)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHH---HHHHTTS---TTSGG-HHHHHHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHH---HHHHHHHH-hhccCHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999976 33444456666555 44444333 345555689999999999999886
Q ss_pred CCcCCH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 000423 1418 KPKKTL--------------NEITKEL-CPVLSIQQLYRIST 1444 (1527)
Q Consensus 1418 k~~~~~--------------~~i~~~~-C~~Ls~~QI~kIl~ 1444 (1527)
.+...+ .++..++ =..||+.++.+||.
T Consensus 450 ~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 450 GSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred cchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 543322 1121111 24678888877774
No 224
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.53 E-value=0.35 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.9
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
--++-+-||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4578899999999999999999999763
No 225
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.46 E-value=1.1e+02 Score=39.13 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 799 ARTSYLTARSSAIQLQTGLRAMVARN 824 (1527)
Q Consensus 799 ~Rr~y~~~r~a~i~IQs~~Rg~~aRr 824 (1527)
.|+.+..++.-+.+.|+++-++..++
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 34555556666666666666666554
No 226
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.44 E-value=0.5 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999988888764
No 227
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.40 E-value=1 Score=51.73 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
|-.+.+.+.......++++.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555655556679999999999999999988887764
No 228
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.35 E-value=62 Score=36.34 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 974 KIESLTAEVDSLKALLLSERQSAEEAR 1000 (1527)
Q Consensus 974 ~~~~L~~E~~~Lk~~l~~le~~~~~le 1000 (1527)
.+..|+-+.+.|+..+..++...+++.
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333
No 229
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.32 E-value=0.38 Score=52.40 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEecCCCCCChhhhHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yl 173 (1527)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999998865
No 230
>PRK06315 type III secretion system ATPase; Provisional
Probab=86.31 E-value=0.97 Score=56.25 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 137 DVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
-.|...+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 152 i~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 152 VRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 3444455566789999999999999999999988766
No 231
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.27 E-value=0.46 Score=54.79 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHhcC
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~~~ 178 (1527)
.+..++-+-||||+|||++.|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 46678899999999999999999997764443
No 232
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=86.26 E-value=1.9 Score=53.71 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.|++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33444577777777899999999999999999999888754
No 233
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=86.25 E-value=58 Score=35.91 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 973 EKIESLTAEVDSLKALLLSERQSAEE 998 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~le~~~~~ 998 (1527)
..+.+|..+..-+...+..+....+.
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~ 134 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEK 134 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 33444444444444444444443333
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.15 E-value=0.58 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.8
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHh
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~ 176 (1527)
++|+|+||+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 235
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.08 E-value=0.68 Score=55.84 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred HHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.+.+.+ ..|+|+|+.|||||+..+.++.|+.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 334444 4699999999999999999888773
No 236
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.08 E-value=1.2e+02 Score=39.25 Aligned_cols=54 Identities=31% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 889 EAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANF 942 (1527)
Q Consensus 889 ~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~ 942 (1527)
+....|-.+|.+|++.|..........|.-..-|+..|+.++++.+.+++++..
T Consensus 580 ~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 580 ERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666666655443333333333345667777777766666665543
No 237
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.01 E-value=1.1e+02 Score=41.58 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000423 884 TGALKEAKDKLEKRVEELTW 903 (1527)
Q Consensus 884 ~~~L~~~~~~LE~kv~eL~~ 903 (1527)
..+|+....++++.|+.+..
T Consensus 204 l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 204 LNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554443
No 238
>PRK09099 type III secretion system ATPase; Provisional
Probab=85.94 E-value=1.5 Score=54.62 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566566789999999999999999988776543
No 239
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.92 E-value=0.51 Score=57.50 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 240
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.88 E-value=0.56 Score=49.79 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|+|.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 241
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.84 E-value=0.87 Score=54.25 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=36.5
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 118 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
+.|+-....++..|-- +-+..+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4455444445444433 223455555555545699999999999999999988774
No 242
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.79 E-value=59 Score=35.58 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 000423 1019 DTEEKVGQLQESMQRLEEKLCN 1040 (1527)
Q Consensus 1019 ~~e~e~~~L~~~~~~Leeki~~ 1040 (1527)
...+++..++..+..++.++..
T Consensus 149 ~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 149 KTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 243
>PF13245 AAA_19: Part of AAA domain
Probab=85.71 E-value=0.91 Score=42.58 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+...+|.|..|+|||.+...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567788999999999888888888874
No 244
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.51 E-value=0.61 Score=50.84 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=24.0
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
--|.|+|.||||||+..+.+++.|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 368899999999999999999999753
No 245
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.49 E-value=89 Score=37.32 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 000423 975 IESLTAEVDSLKALLLSERQSAEEARKACMDAE 1007 (1527)
Q Consensus 975 ~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~ 1007 (1527)
+..++..+..|..++..++.+...++..+.+++
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 333344444444444444444444444444443
No 246
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.49 E-value=1 Score=56.55 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=38.8
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
++|+-+.+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||+.++.+.++|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 56665555554 4566543 44444444 4789999999999999999999998864
No 247
>PRK06217 hypothetical protein; Validated
Probab=85.47 E-value=0.53 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999988776
No 248
>PTZ00121 MAEBL; Provisional
Probab=85.44 E-value=1.8e+02 Score=40.90 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=24.7
Q ss_pred CccccCCCCChHHHHHHHHHhhccCccccccCC
Q 000423 65 DDMTKLSYLHEPGVLHNLAARYELNEIYTYTGN 97 (1527)
Q Consensus 65 ~Dl~~L~~l~E~~vL~~L~~Ry~~~~iYT~~G~ 97 (1527)
=|||.=...++..|+.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 377777777777777777777777778998774
No 249
>PRK12377 putative replication protein; Provisional
Probab=85.44 E-value=1.3 Score=51.28 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3566666655444433 35799999999999999999999999753
No 250
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.43 E-value=0.89 Score=58.41 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.8
Q ss_pred HhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.....++.|+|.||+|+|||..|+++.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445678999999999999999999987764
No 251
>PRK03846 adenylylsulfate kinase; Provisional
Probab=85.43 E-value=0.99 Score=50.24 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.6
Q ss_pred hcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 145 ~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
...+...|+|.|.||||||+.++.+.+.|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999988654
No 252
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.40 E-value=1.4 Score=58.14 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+-.|+..-...+...+.+.++.|+|..|.|||.+++++++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445554333333334555667899999999999999999988643
No 253
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.25 E-value=0.49 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEecCCCCCChhhhHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla 174 (1527)
|++.|.+|||||+-++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887654
No 254
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.19 E-value=71 Score=36.91 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000423 973 EKIESLTAEVDSLKALLLSERQSAEEARKACM 1004 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~ 1004 (1527)
..+.-|+.++...+.+++.|+..+...+.+++
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444443
No 255
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.13 E-value=9.8 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000423 998 EARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 1042 (1527)
Q Consensus 998 ~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le 1042 (1527)
.+..++..++..+.....+|.+.+..+..|..++..|++++.++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555566667777888888888888888877776654
No 256
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.11 E-value=0.59 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.4
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998877
No 257
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.09 E-value=0.91 Score=56.00 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=28.2
Q ss_pred HHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
....+.+.+++|+|.+|+|||..++.+++.+..
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344567789999999999999999999998754
No 258
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.98 E-value=0.6 Score=57.03 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999975
No 259
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.87 E-value=90 Score=36.85 Aligned_cols=74 Identities=26% Similarity=0.369 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESEN 1045 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en 1045 (1527)
...+..|..+......++..+-++.+++.++..++.....+...+..++..++..++.++..++..+..+....
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~ 251 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKE 251 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444444444555555566666666666666555554443
No 260
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.86 E-value=1.1e+02 Score=37.80 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=10.9
Q ss_pred HhhcCCcccchHHHH
Q 000423 663 SCAGYPTRRTFYEFL 677 (1527)
Q Consensus 663 ~~~Gyp~r~~~~~F~ 677 (1527)
...|||.-+.|..|+
T Consensus 75 kdlgyrgD~gyqtfL 89 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL 89 (521)
T ss_pred HHcCCCcccchhhee
Confidence 345888888887764
No 261
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.85 E-value=1 Score=57.25 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=39.1
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+.|+-..+.++. +|+...-..| +...+..++++++|+.|.|||++++.+.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456655555553 4444422222 3345668999999999999999999999988653
No 262
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.84 E-value=1 Score=56.85 Aligned_cols=58 Identities=26% Similarity=0.385 Sum_probs=40.3
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.++|+-..+.++ .+|+-..-..|+ ...+-+|+++++|..|.|||++++.+-+.|-...
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 356766665555 355544333332 2456689999999999999999999998885543
No 263
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.77 E-value=0.59 Score=54.60 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.8
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4689999999999999999999887754
No 264
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.55 E-value=76 Score=35.77 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000423 980 AEVDSLKALLLSERQSAE 997 (1527)
Q Consensus 980 ~E~~~Lk~~l~~le~~~~ 997 (1527)
.....+...+...++++.
T Consensus 118 k~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 265
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.55 E-value=1.5 Score=49.74 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999887654
No 266
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.53 E-value=0.46 Score=53.98 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=22.1
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
--+++-|+||||||++.|+|-+-+.-.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 356788999999999999988866543
No 267
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.50 E-value=0.71 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEecCCCCCChhhhHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla 174 (1527)
|.|||.+|||||+-++.+-.++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988875
No 268
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=84.48 E-value=0.68 Score=50.78 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|+|.|.||||||+-||.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999884
No 269
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.42 E-value=0.68 Score=51.97 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEecCCCCCChhhhHHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla 174 (1527)
-|-|+|-||||||+-||.+..-|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999988875
No 270
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.40 E-value=3 Score=52.21 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44566677777777899999999999999999988877654
No 271
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.32 E-value=1e+02 Score=40.68 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=12.1
Q ss_pred HHHHHHhcCCCHHHHHHHHhh
Q 000423 354 LNTTAELLKCDAKSLEDALIN 374 (1527)
Q Consensus 354 l~~~a~LLgv~~~~L~~~L~~ 374 (1527)
++.+..||.+-+.++..+|..
T Consensus 143 IqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 455556666666666666544
No 272
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.29 E-value=57 Score=34.05 Aligned_cols=64 Identities=27% Similarity=0.428 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKL 1038 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki 1038 (1527)
+...+.++.++..++...+.....+...+..-.+-+ ..+.+.+.+++..+..|...+.-|...+
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk---~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEEQK---EQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333322221 2233344444455555555454444433
No 273
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.25 E-value=60 Score=34.31 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 000423 893 KLEKRVEELTWRLQ 906 (1527)
Q Consensus 893 ~LE~kv~eL~~~l~ 906 (1527)
.|+.++..|...|+
T Consensus 21 sle~~v~~LEreLe 34 (140)
T PF10473_consen 21 SLEDHVESLERELE 34 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444433
No 274
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.04 E-value=0.85 Score=48.02 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.|.|.|-||||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998654
No 275
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.91 E-value=0.57 Score=59.09 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
...+..-|-||||||||+++..+|.++-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788999999999999999999999754
No 276
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.87 E-value=60 Score=34.29 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMD 1005 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e 1005 (1527)
+..+..+..++..|..++..+......+.+.+.+
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444444333
No 277
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.74 E-value=85 Score=40.72 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=14.1
Q ss_pred CCCCCccchhHHhhchHHHHHHHhhccc
Q 000423 1366 RECCSFSNGEYVKAGLAELEQWCYDATE 1393 (1527)
Q Consensus 1366 r~~Cs~s~G~qIr~nls~LE~W~~~~~~ 1393 (1527)
+|..-||| .++-.|+.+.|.
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 46677888 456678887763
No 278
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.59 E-value=0.71 Score=48.69 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999887754
No 279
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=1.2e+02 Score=37.35 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000423 973 EKIESLTAEVDSLKALLL 990 (1527)
Q Consensus 973 ~~~~~L~~E~~~Lk~~l~ 990 (1527)
..+++|..++..+-+++.
T Consensus 345 ~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 280
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.45 E-value=1.7 Score=54.00 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCCHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhcC-----------CCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 111 LYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 111 lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+.++..+..|-+...-..++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577778777665443444545556666655443321 24789999999999999999886554
No 281
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.37 E-value=1.5 Score=56.34 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=41.3
Q ss_pred HHHHhhccCcCCCCchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 116 MMEQYKGAQFGELSPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
..+.|+-..+.++--|--.+ ..++.+. ..+..++++++|+.|.|||+.|+.+-+.|...
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567766666654333222 3444444 45678999999999999999999999998654
No 282
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.26 E-value=0.87 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998864
No 283
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=83.12 E-value=0.89 Score=49.53 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
++.|+|.|.+|||||+.++.+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988765
No 284
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.04 E-value=0.85 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 285
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=82.99 E-value=0.68 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=19.7
Q ss_pred CeEEEecCCCCCChhhhHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~y 172 (1527)
-.-|+|+|+||+||||+|==+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999998665543
No 286
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.95 E-value=0.93 Score=49.60 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 287
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.94 E-value=4.6 Score=45.19 Aligned_cols=62 Identities=27% Similarity=0.298 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 978 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 1039 (1527)
Q Consensus 978 L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~ 1039 (1527)
|++|++.+++++..++++.++..++++.+++....+.++.++...|.++|.++.+.|++++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555666666666666677777777888888777777777654
No 288
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.91 E-value=1.6 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.7
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987743
No 289
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.85 E-value=1.3 Score=55.14 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.|+... ....+.+...+...+|++.|++|+|||+.++.+-+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444443 3556777777788899999999999999999987654
No 290
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.83 E-value=1.6 Score=57.09 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344455678999999999999999999998876443
No 291
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.79 E-value=1.9e+02 Score=39.10 Aligned_cols=15 Identities=0% Similarity=0.158 Sum_probs=6.8
Q ss_pred HHhccCCCCCHHHHH
Q 000423 1426 ITKELCPVLSIQQLY 1440 (1527)
Q Consensus 1426 i~~~~C~~Ls~~QI~ 1440 (1527)
|+.|.-|.++.....
T Consensus 659 IiID~pp~~~~~d~~ 673 (754)
T TIGR01005 659 VVVDVGTADPVRDMR 673 (754)
T ss_pred EEEcCCCcchhHHHH
Confidence 334544555444443
No 292
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.77 E-value=1 Score=58.42 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=38.4
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 118 EQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
++|+-..+.++- +|+-. ...++. ..+..+++|++|.+|.|||++++++.+.|-..
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 556655555543 33332 233333 45568999999999999999999999998643
No 293
>PRK04182 cytidylate kinase; Provisional
Probab=82.76 E-value=0.8 Score=49.56 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.5
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987654
No 294
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.76 E-value=0.89 Score=51.56 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46789999999999999999998877654
No 295
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.74 E-value=0.98 Score=52.40 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988887754
No 296
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.63 E-value=1e+02 Score=35.83 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 000423 1019 DTEEKVGQLQESMQRLEEKLCNSESENQVIRQQAL 1053 (1527)
Q Consensus 1019 ~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~~~ 1053 (1527)
.+..++..-.+.++.|++++..|+.+.+.|..++.
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666666667777777777777777765543
No 297
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.59 E-value=1.1 Score=56.93 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34455433 234689999999999999998888774
No 298
>PRK13764 ATPase; Provisional
Probab=82.49 E-value=0.99 Score=58.23 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 299
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.48 E-value=10 Score=41.84 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 1011 TELVKKLEDTEEKVGQLQESMQRLE 1035 (1527)
Q Consensus 1011 ~~l~~~L~~~e~e~~~L~~~~~~Le 1035 (1527)
++.+.+++.++.++.+|.+..+.|.
T Consensus 166 ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 166 EEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3333344444444444444333333
No 300
>PHA00729 NTP-binding motif containing protein
Probab=82.38 E-value=1.7 Score=49.31 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
+.-.+|+|+|.+|+|||..|..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999998764
No 301
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=82.32 E-value=1.2 Score=48.25 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999888654
No 302
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.31 E-value=2.1e+02 Score=39.18 Aligned_cols=31 Identities=35% Similarity=0.728 Sum_probs=20.6
Q ss_pred ccccccccccccccccCCCCCccccccccccccc
Q 000423 1490 FTVDDISKSLQQVDIADVEPPAVIRENSGFGFLL 1523 (1527)
Q Consensus 1490 f~~~~~~~~~~~~~l~~i~~p~~l~~~~~~~fl~ 1523 (1527)
|.+++|...++..++.-| .+.++ +|.|||+.
T Consensus 1077 fvlDEiDAALDntNi~kv--asyIr-~~~~Q~Iv 1107 (1141)
T KOG0018|consen 1077 FVLDEIDAALDNTNIGKV--ASYIR-SSNFQFIV 1107 (1141)
T ss_pred eehhhHHHHhhhccHHHH--HHHHh-cCCceEEE
Confidence 345566666666666554 47777 88899974
No 303
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.28 E-value=1.1e+02 Score=41.56 Aligned_cols=15 Identities=33% Similarity=0.111 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000423 833 KAAIIIEAYLRRHTA 847 (1527)
Q Consensus 833 ~AA~~IQ~~~R~~~~ 847 (1527)
.||.+..+....|..
T Consensus 168 ~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 168 LAAAIPDAIAAAYIA 182 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 304
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.23 E-value=1.8 Score=55.52 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.5
Q ss_pred HHHhhccCcCCCC--chHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 117 MEQYKGAQFGELS--PHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.++|+-..+.++- +|+... ...+.. .+-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567666665554 555543 333333 456788999999999999999999998864
No 305
>PRK07667 uridine kinase; Provisional
Probab=82.21 E-value=1.7 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.1
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46779999999999999999999865
No 306
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.18 E-value=1.1e+02 Score=36.37 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000423 881 ARETGALKEAKDKLEKRVEE 900 (1527)
Q Consensus 881 a~e~~~L~~~~~~LE~kv~e 900 (1527)
..+...|+..+.+|.+++-.
T Consensus 98 q~e~~qL~~qnqkL~nqL~~ 117 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFH 117 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 34445555555565554433
No 307
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.17 E-value=1 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 308
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.12 E-value=0.79 Score=55.11 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
++.|++=|-||||||||+....+++-+..-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999998877654
No 309
>PRK04040 adenylate kinase; Provisional
Probab=82.10 E-value=0.94 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla 174 (1527)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998883
No 310
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=1.5e+02 Score=37.47 Aligned_cols=27 Identities=4% Similarity=0.174 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEE 998 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~ 998 (1527)
+++++-+..+.+.|.+-++.+..+.++
T Consensus 661 k~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 661 KKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655554
No 311
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.88 E-value=1.8 Score=53.56 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=39.8
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 118 EQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
+.|+-..+.+.--|-.++ ..++++... +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555555554444333 246666655 56789999999999999999999988854
No 312
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=81.86 E-value=5.2 Score=34.97 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=34.5
Q ss_pred CCccccccCcEE--EEeCCCCCeEeEEEEEec--CCeEEEEeCCCcEEEEeCCc
Q 000423 2 AAPVNIIVGSHV--WVEHPELAWVDGEVFKIS--AEEVHVHTTNGQTVITNISK 51 (1527)
Q Consensus 2 ~~~~~~~~g~~v--wv~~~~~~w~~~~v~~~~--~~~~~v~~~~g~~~~~~~~~ 51 (1527)
|+++.+..|+.| |-|+ +..|-.|+|++.+ ....+|..+||.+.+++..+
T Consensus 1 mp~~k~~~Ge~V~~rWP~-s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lke~d 53 (55)
T PF09465_consen 1 MPSRKFAIGEVVMVRWPG-SSLYYEGKVLSYDSKSDRYTVLYEDGTELELKEND 53 (55)
T ss_dssp SSSSSS-SS-EEEEE-TT-TS-EEEEEEEEEETTTTEEEEEETTS-EEEEECCC
T ss_pred CCcccccCCCEEEEECCC-CCcEEEEEEEEecccCceEEEEEcCCCEEEecccc
Confidence 456789999987 5565 4479999999954 56889999999998877654
No 313
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.81 E-value=12 Score=34.50 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000423 977 SLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 1041 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~l 1041 (1527)
.|+.++..|+..++.+..++...+..+..+..+.+....+|.++-.++..|..+++.|.+++.+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666676666666666665555555555555566667777777777777777777765443
No 314
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=25 Score=35.93 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000423 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 1050 (1527)
Q Consensus 1011 ~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~ 1050 (1527)
.++.++++.++-++..|+...+.+++++.+|.++....-.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677778888888888888888888888877655443
No 315
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=81.77 E-value=1.2 Score=55.40 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHhcCCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 142 AMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
.+..-++.|.+.|.|+||+|||+..+.+.++
T Consensus 158 ~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 158 IFTPLCAGQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred eeceecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3333567899999999999999998766543
No 316
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.75 E-value=0.45 Score=63.41 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000423 1015 KKLEDTEEKVGQLQESMQRLEE 1036 (1527)
Q Consensus 1015 ~~L~~~e~e~~~L~~~~~~Lee 1036 (1527)
.++..++.+..++..+.+.|++
T Consensus 398 ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 398 EKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 317
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=81.73 E-value=0.95 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~y 172 (1527)
+--=+.+.|.||||||+..|+|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3446789999999999999998763
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=81.64 E-value=2.2 Score=51.43 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987644
No 319
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.62 E-value=41 Score=39.71 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 975 IESLTAEVDSLKALLLSERQSAEEARK 1001 (1527)
Q Consensus 975 ~~~L~~E~~~Lk~~l~~le~~~~~le~ 1001 (1527)
+..|+.+++.++..+...+++++++..
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443333333333333
No 320
>PRK14527 adenylate kinase; Provisional
Probab=81.57 E-value=1.2 Score=49.20 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.+..-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999887664
No 321
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=81.57 E-value=1 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.2
Q ss_pred CeEEEecCCCCCChhhhHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~ 171 (1527)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887775
No 322
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=81.54 E-value=1.9 Score=46.69 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
+|...+...| ...+.-.|-++|-||||||+.|-.+-+.|-..|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 4444443333 344678999999999999999999999988765
No 323
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=81.52 E-value=4.3 Score=35.42 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=40.9
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEecC-CeEEEEeCC-CcEEEEeCCcccCCC
Q 000423 6 NIIVGSHVWVEHPELAWVDGEVFKISA-EEVHVHTTN-GQTVITNISKVFPKD 56 (1527)
Q Consensus 6 ~~~~g~~vwv~~~~~~w~~~~v~~~~~-~~~~v~~~~-g~~~~~~~~~~~~~~ 56 (1527)
.+.+|+.|=++..+..|..|+|+++.+ +.+.|...| |....++.+++.+..
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899888777677899999999987 778888866 988888877766553
No 324
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=81.49 E-value=3.1 Score=51.92 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 136 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 33456667677889999999999999999988877644
No 325
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=81.45 E-value=1.1 Score=45.95 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999998877
No 326
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=81.35 E-value=1.1 Score=49.83 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=29.2
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHHHHHHhcch-----HHhhccC
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGN 203 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie~~il~snp-----iLEaFGN 203 (1527)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988866543 211 1111344455665443 6667776
No 327
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.34 E-value=1.8 Score=55.68 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=39.1
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.++|+-+.+.++ .+|+-.. ..++.. .+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356665555554 3555543 333333 456789999999999999999999998853
No 328
>PRK11281 hypothetical protein; Provisional
Probab=81.28 E-value=1.1e+02 Score=43.12 Aligned_cols=178 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 000423 867 RRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEI---------AKLQDALQAMQLQV 937 (1527)
Q Consensus 867 ~~~arkel~~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~---------~~Lq~~~eeLe~ql 937 (1527)
.+.....++..-.--.++...++..+.+++++.+...++....+....+.+...... .+|++.+.+.+.++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000423 938 EEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLT---------------AEVDSLKALLLSERQSAEEARKA 1002 (1527)
Q Consensus 938 ee~~~~l~~E~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~---------------~E~~~Lk~~l~~le~~~~~le~~ 1002 (1527)
++.+..+.....++.......+ .....+.+.....++++ .....|+.++..++.+++..+.+
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PE---RAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPE---RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchH---HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHH
Q 000423 1003 CMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCN---SESENQV 1047 (1527)
Q Consensus 1003 ~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~---le~en~~ 1047 (1527)
+.......+-...+.+....++.+++..++.|++.+.+ -+.|...
T Consensus 215 l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 215 LEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 329
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.27 E-value=1.4 Score=56.30 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=41.8
Q ss_pred HHHHhhccCcCCCCchHHHHHH--HHHHHHHhcC-CCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 116 MMEQYKGAQFGELSPHVFAIAD--VAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~--~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+++.|+-....++.-|-=.|.+ .....|.... ..+-.|++|.+|+|||++.|.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 5677877777888888655544 2344444333 35677889999999999999988776
No 330
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.18 E-value=1.4e+02 Score=36.38 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000423 977 SLTAEVDSLKALLLSERQSAEEARKACM 1004 (1527)
Q Consensus 977 ~L~~E~~~Lk~~l~~le~~~~~le~~~~ 1004 (1527)
.+..-.+.|++++++++..+...+++..
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666666555543
No 331
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.17 E-value=42 Score=41.01 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=4.6
Q ss_pred CCCcCchhH
Q 000423 638 RPAIFENAN 646 (1527)
Q Consensus 638 ~p~~fd~~~ 646 (1527)
.|..||.+.
T Consensus 62 ~p~e~DDPn 70 (359)
T PF10498_consen 62 QPQEYDDPN 70 (359)
T ss_pred CCcccCCHH
Confidence 355555543
No 332
>PRK06761 hypothetical protein; Provisional
Probab=81.16 E-value=0.97 Score=53.10 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.7
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 333
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.14 E-value=49 Score=40.69 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=6.2
Q ss_pred HHHHHHhhcCCcc
Q 000423 658 EAIRISCAGYPTR 670 (1527)
Q Consensus 658 e~iri~~~Gyp~r 670 (1527)
.-|||-|.|-|.|
T Consensus 103 ~~irivRd~~pnr 115 (493)
T KOG0804|consen 103 SDIRIVRDGMPNR 115 (493)
T ss_pred heeEEeecCCCce
Confidence 3344444555544
No 334
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.08 E-value=1.2e+02 Score=40.39 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=10.1
Q ss_pred chHhHhHhHHHHHH
Q 000423 1398 SAWDELKHIRQAVG 1411 (1527)
Q Consensus 1398 ~a~~~L~~i~QA~~ 1411 (1527)
..+|+++||.+||.
T Consensus 549 ~irdQikhL~~av~ 562 (717)
T PF09730_consen 549 IIRDQIKHLQRAVD 562 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677888887775
No 335
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=81.07 E-value=0.99 Score=53.30 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred CeEEEecCCCCCChhhhHHHH
Q 000423 149 SNSILVSGESGAGKTETTKML 169 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~i 169 (1527)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999987
No 336
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.07 E-value=1.4 Score=52.13 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 132 VFAIADVAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~--------~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
++....++...++.. .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555566665531 245689999999999999999999999765
No 337
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.92 E-value=1.6e+02 Score=40.08 Aligned_cols=9 Identities=33% Similarity=0.515 Sum_probs=4.5
Q ss_pred cccchHHHH
Q 000423 669 TRRTFYEFL 677 (1527)
Q Consensus 669 ~r~~~~~F~ 677 (1527)
+|+.+..|+
T Consensus 23 vrI~l~NF~ 31 (1072)
T KOG0979|consen 23 VRIELHNFL 31 (1072)
T ss_pred EEEEEeeee
Confidence 355555554
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=80.88 E-value=2.7 Score=49.40 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 131 HVFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 131 HifaiA~~Ay~~m~~---------~~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.+..+..++++.+.. .++.+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 456666677766542 23468999999999999999988888887654
No 339
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.80 E-value=1.6 Score=39.39 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=17.0
Q ss_pred EEEecCCCCCChhhhHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLM 170 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im 170 (1527)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999876544
No 340
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=80.79 E-value=1.3 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~~ 177 (1527)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997643
No 341
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=80.78 E-value=1.1 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+.+.+.|-|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 342
>PRK08356 hypothetical protein; Provisional
Probab=80.78 E-value=0.98 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEecCCCCCChhhhHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~ 171 (1527)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 343
>PRK01156 chromosome segregation protein; Provisional
Probab=80.68 E-value=2.5e+02 Score=38.92 Aligned_cols=32 Identities=6% Similarity=0.204 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000423 1018 EDTEEKVGQLQESMQRLEEKLCNSESENQVIR 1049 (1527)
Q Consensus 1018 ~~~e~e~~~L~~~~~~Leeki~~le~en~~L~ 1049 (1527)
++...++..+.++...|+.++.+++.....++
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544444443
No 344
>PRK15453 phosphoribulokinase; Provisional
Probab=80.65 E-value=1.2 Score=51.97 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=21.1
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+.=-|.|+|-||||||+.++.+-+-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999998766544
No 345
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.57 E-value=1.1 Score=50.55 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998876543
No 346
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.57 E-value=1.5 Score=44.58 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=23.8
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~~ 177 (1527)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 347
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.55 E-value=1.8 Score=55.94 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=40.6
Q ss_pred HHHHhhccCcCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 116 MMEQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 116 ~~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
..++|+-+.+.++ .+|+-+ .++++...+ -.+++|++|+.|.|||++++.+-++|-.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~----~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKA----ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3456776665554 466643 344444444 4899999999999999999999998854
No 348
>PRK04195 replication factor C large subunit; Provisional
Probab=80.51 E-value=1.6 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 347899999999999999999887765
No 349
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.45 E-value=0.71 Score=59.40 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.+.+.|.|.|+||||||+..|.+++++.--+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 389 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5789999999999999999999998875433
No 350
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.45 E-value=3.1e+02 Score=39.87 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.9
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
-..+|+|.+|||||.+.-.++.||..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 467899999999999999999998764
No 351
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=80.41 E-value=1.2 Score=50.03 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999877644
No 352
>PRK08727 hypothetical protein; Validated
Probab=80.38 E-value=2.3 Score=48.68 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.9
Q ss_pred cCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 146 ~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
....+.|+|+|+||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3456789999999999999999988887654
No 353
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.38 E-value=1.2 Score=53.83 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 457899999999999999999887654
No 354
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.35 E-value=50 Score=33.98 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000423 983 DSLKALLLSERQSAEE 998 (1527)
Q Consensus 983 ~~Lk~~l~~le~~~~~ 998 (1527)
..|+.++.+++.+++.
T Consensus 71 ~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 71 EELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 355
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.32 E-value=1.6 Score=52.42 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999998644
No 356
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.29 E-value=1.2 Score=51.15 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.3
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46899999999999999999998864
No 357
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.28 E-value=1.8 Score=55.23 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=37.2
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
++|+-..+.++ ..|+.+.-..+.. ..+-.++++++|++|+|||+.++.+.+.+-.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34554444444 3455443333322 3456789999999999999999999998864
No 358
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=80.27 E-value=1.2 Score=50.10 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999888876543
No 359
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.25 E-value=1.4 Score=53.84 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=32.3
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHHhcCCCCCCCccHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~~~~~~~~~~~~ie 188 (1527)
..|+|-+-|+|||||++..+++.||+-.-+|+-.-++..|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999876664333444443
No 360
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.22 E-value=2.2 Score=54.55 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=41.1
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.++|+-+.+.++ .+||-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467776666665 355543 444444 4567899999999999999999999998854
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=80.15 E-value=1.2 Score=46.08 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
..+.+.|.|++|||||+..+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56889999999999999887665544
No 362
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=80.11 E-value=1.4 Score=48.39 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999988653
No 363
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=80.11 E-value=1.3 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~ 171 (1527)
...+.+.|.|+||||||+..|.|+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999998887664
No 364
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=80.00 E-value=1.7 Score=56.21 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
|-|.+|=.++|.. +.++.-.|+|+|-||||||+.++.+...|..
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4455555555443 4456679999999999999999999998865
No 365
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=79.95 E-value=0.99 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999888766
No 366
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=79.93 E-value=2.2 Score=51.97 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 136 ADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 136 A~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
|...+..+.+. +-+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44556655554 45899999999999999999999998865
No 367
>PRK06893 DNA replication initiation factor; Validated
Probab=79.93 E-value=2.6 Score=48.17 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+|.. .+..+.+.+. ...+-++++.|+||+|||..+..+-+.+..-
T Consensus 22 ~~~~-~~~~~~~~~~-~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 22 NNLL-LLDSLRKNFI-DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred ChHH-HHHHHHHHhh-ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3443 3333444443 4566789999999999999999999887654
No 368
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=79.89 E-value=1.3 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887654
No 369
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.88 E-value=1.3 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998877654
No 370
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.84 E-value=19 Score=40.14 Aligned_cols=66 Identities=24% Similarity=0.247 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Lee 1036 (1527)
....+..|+.++..|+..+..++..+.+..+.+..+..+...+.-.+..+++++..|+.++..|=+
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566555555555555555555544444444433433444445555555554444433
No 371
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.83 E-value=1.5 Score=51.10 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
+..-.+++.|++|+|||..++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3557899999999999999999999886554
No 372
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=79.77 E-value=2 Score=50.84 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999888
No 373
>PRK00698 tmk thymidylate kinase; Validated
Probab=79.70 E-value=1.7 Score=48.16 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.5
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988643
No 374
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=79.69 E-value=2.1 Score=51.14 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=34.1
Q ss_pred CCCCchHHHHHHHHHHHH----HhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 126 GELSPHVFAIADVAYRAM----INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 126 ~~~~PHifaiA~~Ay~~m----~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+++|.--+.+......| ..-.....|++.|-+|||||+.++.+-+.|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456674444444444433 445678899999999999999999987654
No 375
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=79.69 E-value=1.2 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999988776
No 376
>PLN03188 kinesin-12 family protein; Provisional
Probab=79.69 E-value=2.8e+02 Score=38.95 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhH
Q 000423 130 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETT 166 (1527)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 166 (1527)
-.||..+..-.-.-.-.|-|=||+..|.+|||||.|.
T Consensus 147 edVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 147 EDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 3566655443323334788999999999999999874
No 377
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.67 E-value=1.5 Score=47.23 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~y 172 (1527)
+++++++.|.||+|||.....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999977766543
No 378
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=79.66 E-value=1.2 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999887654
No 379
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.64 E-value=1.2 Score=53.82 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 457899999999999999999887655
No 380
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.61 E-value=1.5 Score=47.90 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.5
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999999888877776543
No 381
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.60 E-value=2.3 Score=46.76 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 140 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 140 y~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
++++... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444 46799999999999999999999988864
No 382
>PRK14528 adenylate kinase; Provisional
Probab=79.59 E-value=1.4 Score=48.54 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEecCCCCCChhhhHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yl 173 (1527)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987766
No 383
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=79.52 E-value=3.1 Score=52.10 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
|...-.+...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444556666667789999999999999999988777653
No 384
>PRK08116 hypothetical protein; Validated
Probab=79.46 E-value=2.9 Score=48.98 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 130 PHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 130 PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
.+.|+.|..--...... ..+..+++.|++|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34566665544444332 345679999999999999999999999764
No 385
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.39 E-value=2.9 Score=51.13 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=43.4
Q ss_pred HHHHhhccCcCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 116 MMEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
..++|+-..+.++--|-.++ +..+..... .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35678777777776665543 445555544 56789999999999999999999888754
No 386
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.38 E-value=1.4 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988877544
No 387
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.36 E-value=2.1 Score=46.85 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
+..-.|+++|.||||||+.++.+..+|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44569999999999999999999998853
No 388
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.31 E-value=2.7 Score=47.65 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCC--CeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 136 ADVAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 136 A~~Ay~~m~~~~~--~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
|-.|-..+..... -..++|.|+||+|||.....+..++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4445555555432 3579999999999999988888877654
No 389
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=79.30 E-value=3.6 Score=51.04 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.|...+..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444455555788999999999999999988776643
No 390
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.18 E-value=1.4 Score=49.65 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999877654
No 391
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.12 E-value=2.5 Score=55.13 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=38.6
Q ss_pred HHhhccCcCCCC--chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 118 EQYKGAQFGELS--PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
++|+-..+.++- .|+...-..++ ...+..+++|++|++|.|||+.++.+.++|-.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456665555553 45444323332 23456899999999999999999999999864
No 392
>PRK05922 type III secretion system ATPase; Validated
Probab=79.03 E-value=1.7 Score=54.01 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
++...-.|...+..-++.|-|.|.|.+|+|||+..+.+.++.
T Consensus 140 ~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred ecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 344444555666677899999999999999999988887654
No 393
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.03 E-value=2.6 Score=53.33 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=37.3
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
+.|+-+.+.+. ++|+ ....+.+... +-++++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45665555554 4565 3344555544 4568899999999999999999988764
No 394
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.02 E-value=1.3 Score=55.93 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+-.+.=|.||||||||+.+|.|+..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35577888999999999999999887744
No 395
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.00 E-value=23 Score=42.53 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHH
Q 000423 1318 HWQSIVKSLNSYL 1330 (1527)
Q Consensus 1318 ~~~~Il~~L~~~~ 1330 (1527)
.|..-+++|=.-+
T Consensus 289 ~WT~AlK~lLtnl 301 (314)
T PF04111_consen 289 EWTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6766665554433
No 396
>PRK13768 GTPase; Provisional
Probab=78.94 E-value=1.6 Score=50.70 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998644
No 397
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=78.92 E-value=1.3 Score=53.27 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+.+.+-|-||||||||+.+|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467889999999999999999988765
No 398
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.92 E-value=1.8 Score=46.55 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.6
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
..|.|.|.||||||+.++.+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 399
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=78.92 E-value=1.4 Score=49.07 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999988877543
No 400
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.80 E-value=0.94 Score=59.81 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHhcC
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~~~ 178 (1527)
...|.|.|.|+||||||+.+|+++.++.--.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35789999999999999999999988765444
No 401
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.76 E-value=1.3 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~ 171 (1527)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999998755
No 402
>PF13479 AAA_24: AAA domain
Probab=78.71 E-value=1.2 Score=50.17 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.1
Q ss_pred CCeEEEecCCCCCChhhhHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKML 169 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~i 169 (1527)
++..|+|.|+||+|||..++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5789999999999999877654
No 403
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.71 E-value=1.4 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEecCCCCCChhhhHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla 174 (1527)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988774
No 404
>PRK06936 type III secretion system ATPase; Provisional
Probab=78.67 E-value=1.9 Score=53.69 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 133 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
+...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 34444555666666789999999999999999988877654
No 405
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.63 E-value=1.5 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 406
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=78.62 E-value=1.9 Score=40.93 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCChhhhHHHHHHHHHHh
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~~ 176 (1527)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999873
No 407
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.60 E-value=1.6 Score=51.68 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHhcC
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~~~ 178 (1527)
.|++.|++|+|||..|+.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 408
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.58 E-value=1.5 Score=47.78 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 409
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.56 E-value=2e+02 Score=36.55 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 866 RRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRIL 945 (1527)
Q Consensus 866 R~~~arkel~~Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~ 945 (1527)
....+..+...+.....-...+.....++. ...+...+++ ....+...++.....++.++.++..++.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 24 SYQHAQQKAEQLAEREEMVAELSAAKQQIT-QSEHWRAECE-----------LLNNEVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHhHhhHHHHHHHHH
Q 000423 946 KEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEE------ARKACMDAEVRNTELVKKLED 1019 (1527)
Q Consensus 946 ~E~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~------le~~~~e~~~~~~~l~~~L~~ 1019 (1527)
.+++.. .++.+.|.+..++|+.+...+-.++-+ .+.....+..-...+.++|+.
T Consensus 92 ~~~~~~--------------------~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~ 151 (475)
T PRK10361 92 AAQQHA--------------------DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDG 151 (475)
T ss_pred HHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHhh
Q 000423 1020 TEEKVGQLQE----SMQRLEEKLCNSESENQVIRQQALA 1054 (1527)
Q Consensus 1020 ~e~e~~~L~~----~~~~Leeki~~le~en~~L~~~~~~ 1054 (1527)
.+.++..... +-..|.+++..|...|..+.+.+.+
T Consensus 152 f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 152 FRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.45 E-value=2.4 Score=56.24 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 138 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+...++..++++.|++|+|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 557777778888899999999999999999988765
No 411
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=78.44 E-value=3.4 Score=43.71 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45678999999999999999999999874
No 412
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.44 E-value=18 Score=45.84 Aligned_cols=31 Identities=6% Similarity=0.264 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000423 1018 EDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1527)
Q Consensus 1018 ~~~e~e~~~L~~~~~~Leeki~~le~en~~L 1048 (1527)
+..+.++..|..++.+-.+.+.+|+.+...+
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 413
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.36 E-value=1.9e+02 Score=36.67 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000423 862 QCGWRRRVARRELRNLKMA--------ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK---AQEIAKLQDAL 930 (1527)
Q Consensus 862 Q~~~R~~~arkel~~Lk~~--------a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k---~~e~~~Lq~~~ 930 (1527)
+.+.|+. ..+.+++|+.. ..+++..+..+..|..+|..++..+.+......++.+.. +....+++.++
T Consensus 304 ~~h~r~~-~er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~L 382 (654)
T KOG4809|consen 304 MAHMRMK-VERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKL 382 (654)
T ss_pred HHhhhch-HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhh
Q 000423 931 QAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRN 1010 (1527)
Q Consensus 931 eeLe~qlee~~~~l~~E~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~ 1010 (1527)
..++--+|..+....+-..++.++.+.. .+...--+..+.+..|+.+...++.++...+...+++-.-+.+.+...
T Consensus 383 k~leIalEqkkEec~kme~qLkkAh~~~----ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 383 KSLEIALEQKKEECSKMEAQLKKAHNIE----DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh----HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000423 1011 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 1048 (1527)
Q Consensus 1011 ~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L 1048 (1527)
.+..+++.+++-....-.+++..+..+-..=+.++..+
T Consensus 459 nDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~ 496 (654)
T KOG4809|consen 459 NDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQL 496 (654)
T ss_pred ccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHH
No 414
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.30 E-value=1 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988877654
No 415
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.30 E-value=22 Score=42.71 Aligned_cols=11 Identities=9% Similarity=0.183 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000423 1319 WQSIVKSLNSY 1329 (1527)
Q Consensus 1319 ~~~Il~~L~~~ 1329 (1527)
|.-+|.-|.-+
T Consensus 294 lK~lLtnlKw~ 304 (314)
T PF04111_consen 294 LKYLLTNLKWL 304 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344333333
No 416
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.25 E-value=1.4 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.+...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999988876543
No 417
>PRK06921 hypothetical protein; Provisional
Probab=78.18 E-value=2.1 Score=50.13 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.8
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
...++++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999999988887764
No 418
>PLN02796 D-glycerate 3-kinase
Probab=78.09 E-value=1.5 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEecCCCCCChhhhHHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla 174 (1527)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 488999999999999998877664
No 419
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=78.02 E-value=1.6 Score=49.02 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999888776543
No 420
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=77.90 E-value=1.5 Score=48.30 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|||+|.||||||+.++.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999988874
No 421
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.81 E-value=3.1 Score=52.41 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=39.5
Q ss_pred HHhhccCcCCCCchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 118 EQYKGAQFGELSPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
+.|+-..+.++--|--.++ ..+.+.. .+-.+++|++|++|.|||+.++.+.++|..
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4566555555544444433 3444444 445799999999999999999999999864
No 422
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.78 E-value=1.5 Score=51.46 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998877665
No 423
>PRK12608 transcription termination factor Rho; Provisional
Probab=77.75 E-value=2.1 Score=52.04 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 134 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577788888888889999999999999999999998887754
No 424
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.43 E-value=3.9 Score=49.33 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988753
No 425
>PRK14531 adenylate kinase; Provisional
Probab=77.41 E-value=1.8 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.4
Q ss_pred eEEEecCCCCCChhhhHHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yla 174 (1527)
|-|+|.|.+|||||+.++.+-+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 426
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.40 E-value=1.3 Score=57.72 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+.|.+.|.|+||||||+..|.++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46899999999999999999999887743
No 427
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.37 E-value=2.9 Score=54.10 Aligned_cols=56 Identities=23% Similarity=0.422 Sum_probs=40.2
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
+.|+-+.+.++ .+|+-..=..++. ..+-.++++++|+.|.|||+++|.+.+.+-..
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45655555554 5776654444443 35568999999999999999999999887543
No 428
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=77.36 E-value=3 Score=48.64 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 129 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 129 ~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.|++=.+-+.+.+.+.. +..|++.|++|+|||+.++.+-+.+
T Consensus 4 t~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CHHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35555666667666553 5799999999999999999876543
No 429
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=77.35 E-value=4.2 Score=50.22 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=40.0
Q ss_pred CHHHHHHhhccCcCCCCchHHHHHHHHHHHHHhc---------CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 113 DTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE---------GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~---------~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
++..+..|-+...-..+.=+-+++..+|.+..+. ..+..|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444455544444444555666666666543332 135899999999999999999876664
No 430
>PRK00023 cmk cytidylate kinase; Provisional
Probab=77.35 E-value=1.7 Score=49.56 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 431
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=77.24 E-value=1.6 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.6
Q ss_pred CCeEEEecCCCCCChhhhHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~ 171 (1527)
..-.|.|+|.||+||++..|.+-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 456899999999999998776543
No 432
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=77.23 E-value=1.7 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999988876543
No 433
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=77.23 E-value=1.7 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.3
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 434
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.16 E-value=1.7 Score=48.88 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.. +.+.|.|+||||||+..|.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999988876544
No 435
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.15 E-value=1.7 Score=49.70 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999887654
No 436
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.11 E-value=2.4 Score=46.95 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~ 176 (1527)
-||++|-.|||||+-+|.+-+-|-.-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 38999999999999999999988653
No 437
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=77.08 E-value=1.7 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..+.|...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999888876543
No 438
>PRK10646 ADP-binding protein; Provisional
Probab=77.07 E-value=3.9 Score=43.68 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999998873
No 439
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=77.03 E-value=1.7 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998887643
No 440
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=77.01 E-value=1.8 Score=46.72 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998887654
No 441
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=76.98 E-value=1.6 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.9
Q ss_pred eEEEecCCCCCChhhhHHHHHHHH
Q 000423 150 NSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~im~yl 173 (1527)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999988776
No 442
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=76.98 E-value=3.3 Score=45.45 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
...+.+++.|.+|.|||..+-.+.+.+..-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356899999999999999999999888763
No 443
>PRK03839 putative kinase; Provisional
Probab=76.95 E-value=1.8 Score=47.28 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEecCCCCCChhhhHHHHHHHH
Q 000423 151 SILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yl 173 (1527)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987765
No 444
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.94 E-value=25 Score=38.16 Aligned_cols=66 Identities=23% Similarity=0.409 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 971 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR--NTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1527)
Q Consensus 971 ~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~--~~~l~~~L~~~e~e~~~L~~~~~~Lee 1036 (1527)
..+.+..|..++..|+.++..++..+..++.++..+... .+++...+.+++.++..+++.+..|+.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888888888888888888888888888777654 466666777777777777777666665
No 445
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=76.84 E-value=1.8 Score=49.68 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988876544
No 446
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=76.81 E-value=1.8 Score=48.35 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998876543
No 447
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.71 E-value=1.4e+02 Score=36.35 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 000423 1017 LEDTEEKVGQLQE 1029 (1527)
Q Consensus 1017 L~~~e~e~~~L~~ 1029 (1527)
|.+++.++..|+.
T Consensus 244 l~~l~~~l~~l~~ 256 (344)
T PF12777_consen 244 LAELEEKLAALQK 256 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 448
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.61 E-value=1.9 Score=50.38 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=50.6
Q ss_pred ccCccccccCCeeEEeCCCCCCCCCCCHHHHHHhhc-----cCc--CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCC
Q 000423 87 ELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKG-----AQF--GELSPHVFAIADVAYRAMINEGKSNSILVSGESG 159 (1527)
Q Consensus 87 ~~~~iYT~~G~iLiavNP~~~l~~lY~~~~~~~y~~-----~~~--~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESG 159 (1527)
.-|-=|++.|..=+-||-|+.-. -|+- .++- ..+ -.+||=+..+++ ..+=-|+|+|..|
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~----vlR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTG 135 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYAL----VLRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTG 135 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEE----EEeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCC
Confidence 45667999998888899887653 1211 0110 011 135665554433 4567899999999
Q ss_pred CChhhhHHHHHHHHHH
Q 000423 160 AGKTETTKMLMRYLAY 175 (1527)
Q Consensus 160 aGKTes~k~im~yla~ 175 (1527)
||||+|.--++.|+-.
T Consensus 136 SGKSTTlAamId~iN~ 151 (353)
T COG2805 136 SGKSTTLAAMIDYINK 151 (353)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999964
No 449
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=76.57 E-value=1.8 Score=48.64 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~ 171 (1527)
...+.+.|.|+||||||+..|.|..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888754
No 450
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.51 E-value=3 Score=54.09 Aligned_cols=54 Identities=28% Similarity=0.512 Sum_probs=38.4
Q ss_pred HHhhccCcCCC--CchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 118 EQYKGAQFGEL--SPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
++||-+.+.++ .+|+ -.+..++... +-.+++|++|..|.|||++++.+-+.|-.
T Consensus 7 rKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56665555544 4565 3344444444 45789999999999999999999998854
No 451
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=76.51 E-value=1.8 Score=49.29 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999887654
No 452
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=76.46 E-value=1.2 Score=46.62 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=20.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~ 171 (1527)
..+..|+|.||+|+||+..|+++-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678999999999999998775544
No 453
>PRK02496 adk adenylate kinase; Provisional
Probab=76.43 E-value=1.9 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEecCCCCCChhhhHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yl 173 (1527)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 454
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.30 E-value=1.9 Score=48.26 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
.+.+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 455
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.27 E-value=3.5e+02 Score=38.19 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.4
Q ss_pred HHHHHH
Q 000423 813 LQTGLR 818 (1527)
Q Consensus 813 IQs~~R 818 (1527)
||..+.
T Consensus 28 iq~~l~ 33 (1109)
T PRK10929 28 ITQELE 33 (1109)
T ss_pred HHHHHH
Confidence 444333
No 456
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.27 E-value=1.9 Score=48.66 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=21.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~ 171 (1527)
...+.+.|.|+||||||+..|.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999988764
No 457
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=76.27 E-value=4.1 Score=50.53 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=21.0
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.-+|++.|++|+|||+.+|.+-+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3589999999999999999875443
No 458
>PRK10908 cell division protein FtsE; Provisional
Probab=76.21 E-value=1.9 Score=48.74 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999887643
No 459
>PRK10436 hypothetical protein; Provisional
Probab=76.19 E-value=1.7 Score=54.65 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.++.+.. ...=-|+|+|..|||||++...+++++.
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 3444442 2344799999999999999998888874
No 460
>PRK05439 pantothenate kinase; Provisional
Probab=76.17 E-value=4 Score=48.76 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=26.3
Q ss_pred hcCCCeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 145 ~~~~~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
..+..--|-|+|.||||||+.++.+...|...
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34566789999999999999999988877543
No 461
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=76.16 E-value=2 Score=47.98 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.4
Q ss_pred EEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 151 sIiisGESGaGKTes~k~im~yla~~ 176 (1527)
.++|.|.||||||...+.++.-++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 79999999999999999988888763
No 462
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=76.14 E-value=1.9 Score=48.31 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=26.4
Q ss_pred HHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
......+.++.|+|.|..|+|||...+.+++.+
T Consensus 12 ~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 12 KELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344556678999999999999999999888877
No 463
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=76.10 E-value=1.9 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999988876443
No 464
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=76.07 E-value=1.8 Score=49.36 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 356899999999999999988876543
No 465
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=76.01 E-value=2.2 Score=46.80 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.3
Q ss_pred EEecCCCCCChhhhHHHHHHHHHH
Q 000423 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 152 IiisGESGaGKTes~k~im~yla~ 175 (1527)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=75.99 E-value=1.9 Score=48.11 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998887653
No 467
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.89 E-value=2 Score=48.10 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999887753
No 468
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.87 E-value=2 Score=46.63 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988876543
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.81 E-value=1.3 Score=50.33 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999877655
No 470
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=75.76 E-value=2 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..+.|+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998887643
No 471
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.73 E-value=3.5 Score=54.30 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=39.4
Q ss_pred HHHhhccCcCCCCchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 117 MEQYKGAQFGELSPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.+.|+-..+.++--|-.++ ...+.... .+-..+++++|+.|.|||++|+.+.+.|-.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v--~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIV--QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4567666655554333332 33444444 456899999999999999999999887754
No 472
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=75.71 E-value=2 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999888776543
No 473
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=75.66 E-value=2 Score=48.74 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|++|||||+..|.|...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988877644
No 474
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=75.66 E-value=1.9 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998887754
No 475
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=75.63 E-value=1.1e+02 Score=36.01 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 885 GALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQL 935 (1527)
Q Consensus 885 ~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~ 935 (1527)
..+|..+..|.++++-++.. .+........|..|.++|-+.+.+||.
T Consensus 3 dd~QN~N~EL~kQiEIcqEE----NkiLdK~hRQKV~EVEKLsqTi~ELEE 49 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEE----NKILDKMHRQKVLEVEKLSQTIRELEE 49 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555432 111122222344566666666666654
No 476
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=75.61 E-value=2 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=19.9
Q ss_pred CCCeEEEecCCCCCChhhhHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLM 170 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im 170 (1527)
.+.+.+.|.|+||||||+.++-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999974333
No 477
>PRK12704 phosphodiesterase; Provisional
Probab=75.61 E-value=1.1e+02 Score=39.42 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 923 IAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKA 1002 (1527)
Q Consensus 923 ~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~ee~~~~~~e~~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~ 1002 (1527)
...++.+..+.+.-++++..+...+.++.....++. ....-.+++.+....+..+...+++++.-++.
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE------------~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~ 97 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEE------------IHKLRNEFEKELRERRNELQKLEKRLLQKEEN 97 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC
Q 000423 1003 CMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALAMS 1056 (1527)
Q Consensus 1003 ~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Leeki~~le~en~~L~~~~~~~~ 1056 (1527)
+..-....++..++|...+.++...+++++.+++++.++..+...-......++
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 478
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=75.61 E-value=2 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999887544
No 479
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.57 E-value=4.6 Score=49.01 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=26.1
Q ss_pred hcCCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 145 NEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 145 ~~~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
..+-++++++.|++|.|||+.++.+.+.|-
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678999999999999999999998875
No 480
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.53 E-value=2.1 Score=47.47 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
...+.+.|.|++|||||+..+.++.-+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999888876543
No 481
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=75.49 E-value=2 Score=47.09 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
.....+.|.|+||||||+..|.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999998776553
No 482
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.47 E-value=2.9 Score=53.06 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
||++-+.- |.--+.||.|||.||.|||||+- +-+||-.-|
T Consensus 357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTTQ---l~QyL~edG 396 (1042)
T KOG0924|consen 357 VFACRDQL---LSVIRENQVVVIVGETGSGKTTQ---LAQYLYEDG 396 (1042)
T ss_pred hHHHHHHH---HHHHhhCcEEEEEecCCCCchhh---hHHHHHhcc
Confidence 55554433 22346899999999999999984 677887654
No 483
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.46 E-value=3.3 Score=53.59 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=39.7
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.++|+-+.+.++ ..|+-..-.+++ ...+-..++|++|+.|.|||++++.+.+.|-.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al---~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHAL---EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356766555554 456654333332 24556789999999999999999999999965
No 484
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.40 E-value=66 Score=37.60 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.5
Q ss_pred hcCCcccchHHHHh
Q 000423 665 AGYPTRRTFYEFLH 678 (1527)
Q Consensus 665 ~Gyp~r~~~~~F~~ 678 (1527)
-|||--++.+.|..
T Consensus 3 LGypr~iSmenFrt 16 (267)
T PF10234_consen 3 LGYPRLISMENFRT 16 (267)
T ss_pred CCCCCCCcHHHcCC
Confidence 59998888888864
No 485
>PRK06620 hypothetical protein; Validated
Probab=75.39 E-value=3.4 Score=46.74 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=18.0
Q ss_pred eEEEecCCCCCChhhhHHHH
Q 000423 150 NSILVSGESGAGKTETTKML 169 (1527)
Q Consensus 150 QsIiisGESGaGKTes~k~i 169 (1527)
.+++|.|++|+|||..++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999988853
No 486
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.33 E-value=1.5e+02 Score=38.07 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000423 1013 LVKKLEDTEEKVGQLQESM 1031 (1527)
Q Consensus 1013 l~~~L~~~e~e~~~L~~~~ 1031 (1527)
|..+|.+...+++.|..++
T Consensus 486 L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 486 LEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 487
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=75.30 E-value=3.6 Score=53.79 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=40.0
Q ss_pred HHHhhccCcCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhhhHHHHHHHHHH
Q 000423 117 MEQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1527)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~im~yla~ 175 (1527)
.++|+-+.+.++ .+|+.. +.+.+.. .+-.+++|++|+.|.|||+.++.+.+.|-.
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 456665555554 466654 4444444 456788999999999999999999998865
No 488
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.29 E-value=2.5 Score=47.13 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHHHh
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla~~ 176 (1527)
++.|++-|.+|+|||+|+-.+-.|+..-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999987777777654
No 489
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.25 E-value=3.1 Score=50.94 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=31.4
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHHHHhc
Q 000423 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1527)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTes~k~im~yla~~~ 177 (1527)
+....+...+=.|+|.|.+|+|||.++|++|+-+-..+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 55556666666799999999999999999999987654
No 490
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=75.22 E-value=5.8 Score=49.50 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 132 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
++...-.|...+..-++.|-+.|.|.||+|||+..+.++++.
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 445555666667777889999999999999999988877653
No 491
>PF13173 AAA_14: AAA domain
Probab=75.22 E-value=2.4 Score=43.59 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~yla 174 (1527)
++.++|.|..|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998776
No 492
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.17 E-value=28 Score=39.79 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 972 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 1036 (1527)
Q Consensus 972 ~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~e~e~~~L~~~~~~Lee 1036 (1527)
..+.+.|..|+...-++|....+.+..++..+..++.+.+.....+..+.++...|.+++++++.
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444444444333333333333333333344444444443333
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=75.17 E-value=2.2 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.5
Q ss_pred CCCeEEEecCCCCCChhhhHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLM 170 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im 170 (1527)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356788999999999999999764
No 494
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=75.16 E-value=5.8 Score=50.50 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCChhhhHHHHHHHHH
Q 000423 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1527)
Q Consensus 148 ~~QsIiisGESGaGKTes~k~im~yla 174 (1527)
..-.|++.|++|+|||..+|.+.+.|.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 356799999999999999999988774
No 495
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=75.14 E-value=2.1 Score=48.27 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCChhhhHHHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im~y 172 (1527)
...+.+.|.|+||||||+..|.|+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998887643
No 496
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=75.04 E-value=2 Score=50.84 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.1
Q ss_pred CeEEEecCCCCCChhhhHHHHHHH
Q 000423 149 SNSILVSGESGAGKTETTKMLMRY 172 (1527)
Q Consensus 149 ~QsIiisGESGaGKTes~k~im~y 172 (1527)
.-.|+|.|+||+||||+|=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999998877765
No 497
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=75.03 E-value=2.2 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=18.1
Q ss_pred CCCeEEEecCCCCCChhhhHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKM 168 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~ 168 (1527)
.+-.-++|.|.||||||+..+.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3567899999999999996654
No 498
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=75.02 E-value=2.1 Score=49.43 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhhhHHHHH
Q 000423 147 GKSNSILVSGESGAGKTETTKMLM 170 (1527)
Q Consensus 147 ~~~QsIiisGESGaGKTes~k~im 170 (1527)
...+.+.|.|++|||||+..|.|+
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 499
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.00 E-value=1.7e+02 Score=34.11 Aligned_cols=164 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000423 877 LKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIE 956 (1527)
Q Consensus 877 Lk~~a~e~~~L~~~~~~LE~kv~eL~~~l~~e~~~~~~le~~k~~e~~~Lq~~~eeLe~qlee~~~~l~~E~e~~~~~~e 956 (1527)
+.....+..+++.....++++++.|...++ +.......+++++++++.+++.++..+...++......+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~-----------~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIE-----------EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCCccc----------------ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhHHHHHHHHHH
Q 000423 957 EAPPIVK----------------ETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDT 1020 (1527)
Q Consensus 957 e~~~~~~----------------e~~~l~~~~~~~~~L~~E~~~Lk~~l~~le~~~~~le~~~~e~~~~~~~l~~~L~~~ 1020 (1527)
-+..... .-..+-+.-.++..+..-...=+..+....+.-..++..-..+++..+.+..-..++
T Consensus 102 ~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~ 181 (265)
T COG3883 102 LLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNEL 181 (265)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000423 1021 EEKVGQLQESMQRLEEKLCNSESENQVIRQQ 1051 (1527)
Q Consensus 1021 e~e~~~L~~~~~~Leeki~~le~en~~L~~~ 1051 (1527)
+.....|.....+++.-+.++..+.......
T Consensus 182 e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e 212 (265)
T COG3883 182 ETQLNSLNSQKAEKNALIAALAAKEASALGE 212 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 500
>PLN02348 phosphoribulokinase
Probab=74.98 E-value=3.4 Score=50.58 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCCChhhhHHHHHHHH
Q 000423 135 IADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1527)
Q Consensus 135 iA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~im~yl 173 (1527)
.+......-...++.=-|-|+|-||||||+.++.|.+.|
T Consensus 35 ~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 35 AASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred hhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHH
Done!