BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000424
(1525 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P39706|SWD1_YEAST COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SWD1 PE=1 SV=1
Length = 426
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 98 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI--GIIQVGSQPITSVAWLPMLRL 155
L F P ++L +G G L+ +D+ RP + ++ +PITS+AW P RL
Sbjct: 27 LRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITSIAWSPDGRL 86
Query: 156 LVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 188
L+T RD S+++W + P++P + F P
Sbjct: 87 LLTSSRDWSIKLWD---LSKPSKPLKEIRFDSP 116
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 1321 LEQNQLPDALSCFDEA-FLAL---AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKV 1376
++ N++ +A CF +LAL A ++ A C +Y +A++ E RL +
Sbjct: 1007 VKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEE 1066
Query: 1377 QGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYA----KQMLEL 1432
A LS + S LQ H I +R AI + +++NY A ++L+L
Sbjct: 1067 DTKRAL--------ELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118
Query: 1433 LLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRL-STIGYDVCDLCG 1491
S A + +L D + DP + C TL+ + S +DVC +CG
Sbjct: 1119 AESGPAAEAANRAITLGDRNPHDAFEIE-YDP-HVEMRICPKTLTPVYSGDDFDVCSVCG 1176
Query: 1492 AKF-SALSAPGCIICGMGSI 1510
A + C +C +G I
Sbjct: 1177 AVYHKGYVNEVCTVCDVGGI 1196
>sp|Q8NA23|WDR31_HUMAN WD repeat-containing protein 31 OS=Homo sapiens GN=WDR31 PE=2 SV=1
Length = 367
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 25/152 (16%)
Query: 36 TVEGGRAPTKIKTDLK------------KPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 83
V GG+ T + + K I +AC P+ + A D ++ +++H
Sbjct: 76 CVSGGKDKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGS 135
Query: 84 AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV----SIERPSMIGIIQV 139
+ + + + G A P L G R TLL WDV S+ER S V
Sbjct: 136 SQPRQQLCGHAMVVTG---LAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERAS------V 186
Query: 140 GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 171
+T + W+P ++ D +L++W +R
Sbjct: 187 SRNVVTHLCWVPREPYILQTSEDKTLRLWDSR 218
>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2
Length = 1421
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 1102 PGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQ 1161
P S+ L L+ QP A N T P SSAP G E P A +S AQ Q
Sbjct: 418 PASEPLN-LTQQP--ADKVNNTTNPTSSAPQGCLGNEP--FKPPPPLPVRASTSAHAQMQ 472
Query: 1162 PIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGG 1221
E + + + ++++ P G + GK P + P++ S L D G
Sbjct: 473 KFNESSYASHVSAVKLGQKSPHAGQL---------QLTKGKCCPQKRECPSSQSELSDCG 523
Query: 1222 VPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1271
Q+ Q +I S D G PQ Q P P P +P
Sbjct: 524 YGTQVENQESISTSSND--DDG--PQGKPQHQKP------PCNTKPRNKP 563
>sp|P19835|CEL_HUMAN Bile salt-activated lipase OS=Homo sapiens GN=CEL PE=1 SV=3
Length = 753
Score = 34.3 bits (77), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 1211 PAADSGLP------DGGVPP--QIAPQPAIPVESIGLPDGGVPP----QSSGQTPFPYQS 1258
P DSG P D G PP A PV G D G PP SG P P
Sbjct: 617 PTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTG--DSGAPPVPPTGDSGAPPVPPTG 674
Query: 1259 QVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANP 1292
P VPP+ D A VP +GDSG P P
Sbjct: 675 DAGPPPVPPTG---DSGAPPVPPTGDSGAPPVTP 705
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,927,423
Number of Sequences: 539616
Number of extensions: 24769351
Number of successful extensions: 75774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 901
Number of HSP's that attempted gapping in prelim test: 72247
Number of HSP's gapped (non-prelim): 3374
length of query: 1525
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1394
effective length of database: 120,879,763
effective search space: 168506389622
effective search space used: 168506389622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)