Query 000424
Match_columns 1525
No_of_seqs 451 out of 2762
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:16:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000424.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_201-205//hhsearch_pdb/000424hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_B Coatomer subunit alpha; 1.0 1 1 583.5 20.1 274 1100-1517 27-311 (320)
2 3mv2_A Coatomer subunit alpha; 1.0 1 1 580.0 17.4 272 1100-1517 39-320 (325)
3 3mkq_A Coatomer beta'-subunit; 1.0 1 1 491.7 61.9 720 6-903 13-790 (814)
4 3mkq_B Coatomer subunit alpha; 1.0 1 1 223.5 12.6 165 754-957 1-176 (177)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 216.2 49.9 530 6-631 615-1187(1249)
6 3mkq_A Coatomer beta'-subunit; 1.0 1 1 210.9 54.2 678 6-857 55-774 (814)
7 1vyh_C Platelet-activating fac 1.0 1 1 207.1 29.8 180 43-266 101-281 (410)
8 1nr0_A Actin interacting prote 1.0 1 1 205.7 49.6 245 5-314 17-276 (611)
9 2ynn_A Coatomer subunit beta'; 1.0 1 1 204.8 29.0 248 6-313 13-264 (304)
10 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 200.4 42.1 165 44-250 609-776 (1249)
No 1
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=1.00 E-value=1 Score=583.51 Aligned_cols=274 Identities=16% Similarity=0.244 Sum_probs=245.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCC
Q ss_conf 68897222333479998899998778898999975354333347866889987876675689987011102551000012
Q 000424 1100 LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAA 1179 (1525)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1525)
+++|+||.+ |++|+|| +|+ +|
T Consensus 27 vaAGsFe~A----------------------------~~lLnrQ------------~Gi-------------------vn 47 (320)
T 3mkr_B 27 ILAGSFETA----------------------------MRLLHDQ------------VGV-------------------TQ 47 (320)
T ss_dssp HHTTCHHHH----------------------------HHHHHHH------------SCB-------------------CC
T ss_pred HHCCCHHHH----------------------------HHHHHHH------------HCC-------------------CC
T ss_conf 970689999----------------------------9999987------------385-------------------17
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 599985323212333345446865899989898778999-9999998899999753334789999999888999999887
Q 000424 1180 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLP-DGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQS 1258 (1525)
Q Consensus 1180 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1258 (1525)
|.|++..|++.|. . +++++| .+
T Consensus 48 f~PLk~~F~~~y~------------~-------s~~~l~~~~-------------------------------------- 70 (320)
T 3mkr_B 48 FGPYKQLFLQTYA------------R-------GRTTYQALP-------------------------------------- 70 (320)
T ss_dssp CGGGHHHHHHHHT------------T-------SCEEECSST--------------------------------------
T ss_pred CHHHHHHHHHHHH------------H-------HHHHCCCCC--------------------------------------
T ss_conf 5566999999999------------8-------752135778--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7888999999874322235688999999999999999987788866775146-999999998762199478999999999
Q 000424 1259 QVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAF 1337 (1525)
Q Consensus 1259 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~lk~gy~~~t~gkf~eAl~~Fr~iL 1337 (1525)
+++||..++++++++ +.+..+.| .+|++++. .++||+||++||+|||+||+.+||+||
T Consensus 71 ---------~~p~l~~~~~r~~~~-----------~~~~~~lP-~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL 129 (320)
T 3mkr_B 71 ---------CLPSMYGYPNRNWKD-----------AGLKNGVP-AVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSIL 129 (320)
T ss_dssp ---------TSCCEEECCBTTTTT-----------CCSSSCCB-CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHCCCCCC-----------CCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ---------997402342178422-----------36545788-766689999999999999986578899999999999
Q ss_pred H----HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 8----882377305789999999999999970089999851037997202315899999986069999556799999999
Q 000424 1338 L----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTA 1413 (1525)
Q Consensus 1338 ~----~~v~~~~e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT~c~Lq~~H~~LaLr~A 1413 (1525)
| ++|++++|++|++++|++||||++||+| |++||+ +++.+ +.+.+|++|||||||||+|||.|++|+||+|
T Consensus 130 ~~i~l~~v~~~~e~~e~~eli~icreYilal~i--El~Rr~-l~~~~--~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~A 204 (320)
T 3mkr_B 130 LSVPLLVVDNKQEIAEAQQLITICREYIVGLSM--ETERKK-LPKET--LEQQKRICEMAAYFTHSNLQPVHMILVLRTA 204 (320)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHH--HHHHTT-SCCCS--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-CCCCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 974501116687799999999999999999999--999974-36677--3048899999998664887489999999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEEECCCEECCC-CCCCCCCC
Q ss_conf 9999970039999999999981499-1269999999999973699874469--887894265055111169-99322689
Q 000424 1414 IKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDL 1489 (1525)
Q Consensus 1414 m~~~~K~kN~~tAa~fA~rLL~l~p-~~~~~~arkil~~ce~~~~d~~~i~--~~e~pf~iCa~tltpIy~-~~~v~Cp~ 1489 (1525)
|+++||+|||+||++||||||+++| +++++|||||+++|||+++|+++|| ++ +||+||++||||||+ +++|+|||
T Consensus 205 M~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~~da~eidyD~~-~~f~iCa~s~tPIY~g~~~v~Cp~ 283 (320)
T 3mkr_B 205 LNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMH-NPFDICAASYRPIYRGKPVEKCPL 283 (320)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCBSSCCSCCTT-SCCCBBTTTCCBCCTTSCCEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 9999986019999999999986499989999999999998468987631478887-863021477765669998703789
Q ss_pred CCCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 983113789-9988643420223788787
Q 000424 1490 CGAKFSALS-APGCIICGMGSIKRSDALA 1517 (1525)
Q Consensus 1490 CgA~y~~~~-g~~C~iC~l~~IG~~~~~~ 1517 (1525)
|||+|+++| |++|+||+||+||+ ++.+
T Consensus 284 cgA~y~~~~kG~lC~vC~l~~IG~-~~~G 311 (320)
T 3mkr_B 284 SGACYSPEFKGQICKVTTVTEIGK-DVIG 311 (320)
T ss_dssp TCCEECGGGTTSBCTTTSSBBSSC-CCCC
T ss_pred CCCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 888636634899888785740287-6337
No 2
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=1.00 E-value=1 Score=579.98 Aligned_cols=272 Identities=17% Similarity=0.236 Sum_probs=243.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCC
Q ss_conf 68897222333479998899998778898999975354333347866889987876675689987011102551000012
Q 000424 1100 LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAA 1179 (1525)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1525)
+++|+||.+ |++|+|| +|+ +|
T Consensus 39 vAAGsFetA----------------------------m~lLnrQ------------vGi-------------------vn 59 (325)
T 3mv2_A 39 VAAGAFDAA----------------------------VQALSKQ------------VGV-------------------VK 59 (325)
T ss_dssp HHTTCHHHH----------------------------HHHHHHH------------HCB-------------------CC
T ss_pred HHCCCHHHH----------------------------HHHHHHH------------HCC-------------------CC
T ss_conf 970689999----------------------------9999987------------385-------------------17
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59998532321233334544686589998989877899999999988999997533347899999998889999998877
Q 000424 1180 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1259 (1525)
Q Consensus 1180 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 1259 (1525)
|.|++..|++.|. . +++++|.-
T Consensus 60 f~PLk~~F~~~y~------------~-------s~~~l~~~--------------------------------------- 81 (325)
T 3mv2_A 60 LEPLKKYFTNIYE------------G-------CRTYIPST--------------------------------------- 81 (325)
T ss_dssp CGGGHHHHHHHHH------------H-------TEEEECCS---------------------------------------
T ss_pred CHHHHHHHHHHHH------------H-------HHHHCCCC---------------------------------------
T ss_conf 5566999999999------------8-------86203667---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 888999999874322235688999999999999999987788866775146-9999999987621994789999999998
Q 000424 1260 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL 1338 (1525)
Q Consensus 1260 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~lk~gy~~~t~gkf~eAl~~Fr~iL~ 1338 (1525)
|-.++|+...+++++++ +.++.+.| .+| +++. .++||+||++||+|||+||+.+||+|||
T Consensus 82 ------~~~lp~l~~~~~r~~~e-----------~~~~~~lP-~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 82 ------PCELPAQLGYVRAYDDT-----------VSEDQILP-YVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp ------STTSCCEEEECBSSCSS-----------SCGGGCCB-CCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCCCCCHHHHCCCCCC-----------CCCCCCCC-CCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ------77787612553077422-----------36546788-878-899999999999999865888999999999999
Q ss_pred ----HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf ----8823773057899999999999999700899998510379972023158999999860699995567999999999
Q 000424 1339 ----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAI 1414 (1525)
Q Consensus 1339 ----~~v~~~~e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT~c~Lq~~H~~LaLr~Am 1414 (1525)
++|++++|++|++++|++||||++||+| |++||+ + ++++ ++ |++|||||||||+|||.|++|+||+||
T Consensus 143 ~i~l~~v~~~~e~~e~~eli~icrEYilal~i--El~Rr~-l-~~~~-~k---R~lELAAYFT~c~LQp~H~~LaLr~AM 214 (325)
T 3mv2_A 143 RITLLMVDDAEDEKLAHKILETAREYILGLSI--ELERRS-L-KEGN-TV---RMLELAAYFTKAKLSPIHRTNALQVAM 214 (325)
T ss_dssp HHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH--HHHHHT-C-CTTC-HH---HHHHHHHHGGGSCCCHHHHHHHHHHHH
T ss_pred HHHEEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-C-CCCC-HH---HHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75302216677799999999999999999989--999873-2-7542-77---899999986648874899999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEEECCCEECCC-CCCCCCCCC
Q ss_conf 999970039999999999981499-1269999999999973699874469--887894265055111169-993226899
Q 000424 1415 KRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLC 1490 (1525)
Q Consensus 1415 ~~~~K~kN~~tAa~fA~rLL~l~p-~~~~~~arkil~~ce~~~~d~~~i~--~~e~pf~iCa~tltpIy~-~~~v~Cp~C 1490 (1525)
+++||+|||+||++||||||+++| +++++|||||+++|||+|+|+++|| ++ +||+||++||||||+ ++.|+||||
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da~eidyD~~-~~F~iCa~s~tPIY~g~~~v~Cp~c 293 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPY-AKFDICAATYKPIYEDTPSVSDPLT 293 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCSSCCSCCTT-SCEEECTTTCCEEESSSCEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 999986009999999999986589989999999999998468987532688888-8731534775025699987037888
Q ss_pred CCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 83113789-9988643420223788787
Q 000424 1491 GAKFSALS-APGCIICGMGSIKRSDALA 1517 (1525)
Q Consensus 1491 gA~y~~~~-g~~C~iC~l~~IG~~~~~~ 1517 (1525)
||+|+++| |++|+||+||+||+ ++.+
T Consensus 294 gA~y~~~~kG~lC~vC~l~~IG~-~a~G 320 (325)
T 3mv2_A 294 GSKYVITEKDKIDRIAMISKIGA-PASG 320 (325)
T ss_dssp CCEEEGGGTTSBCSSSSCBBTTC-CCCC
T ss_pred CCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 88625634899888785742188-7635
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=491.68 Aligned_cols=720 Identities=18% Similarity=0.198 Sum_probs=486.2
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 79689999707999799998416349999964188466698068999969999938999899998898299998699909
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~ 85 (1525)
.+.-..++|||++++++++. .+..+.+|+. +.+.....+.. |..+|++++|+|++++|++++.|+.|++||+.+++.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~-~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTL-YSGRVEIWNY-ETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEE-TTSEEEEEET-TTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCCEEEEEEC-CCCCEEEEEEC-CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 98568999889999899994-7998999989-99916778733-899688999968999899992899499998999958
Q ss_pred EEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC-CCCEEEEEECCC
Q ss_conf 99995-2785366573009990799899999589909999688898501575012576848999908-999999997899
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDG 163 (1525)
Q Consensus 86 l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsP-dg~lLvSgS~Dg 163 (1525)
..++. |...|+ +++|+|+++++++++.|++|++||+.+. ......+.+|...|++++|+| ++..+++++.|+
T Consensus 90 ~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 90 VVDFEAHPDYIR-----SIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEEECCSSCEE-----EEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEEECCCCCEE-----EEEEECCCCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 799816899789-----9999589998999928998999989999-5487998379986889999769999999994889
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCC
Q ss_conf 7157871121289999975321257873112434400135885111289906999915--89728998304556876433
Q 000424 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP--RLNLAVLLFANFTGGDNIKN 241 (1525)
Q Consensus 164 tIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP--~~Nliai~F~~~s~~Dd~~~ 241 (1525)
+|++||++.... .. .+... ....+.++.|+| +.+.++ ++++|..+
T Consensus 164 ~v~vwd~~~~~~-----~~----------------~~~~~------~~~~v~~~~~~~~~~~~~l~------~~~~dg~i 210 (814)
T 3mkq_A 164 TVKVWSLGQSTP-----NF----------------TLTTG------QERGVNYVDYYPLPDKPYMI------TASDDLTI 210 (814)
T ss_dssp EEEEEETTCSSC-----SE----------------EEECC------CTTCCCEEEECCSTTCCEEE------EECTTSEE
T ss_pred EEEEEECCCCCC-----EE----------------EEECC------CCCCEEEEEEEECCCCCEEE------EEECCCEE
T ss_conf 499998999961-----06----------------98358------88977999999779998999------99389979
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHCEEEEEECCCCC
Q ss_conf 30000347425441002334785100110012478854200358899887521158972360025321000000115665
Q 000424 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHA 321 (1525)
Q Consensus 242 k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k~~~i~s~~~d~~~ 321 (1525)
+.|..+++. ...++++|.+.+.++ .+++.+. -++... .++.+.+||+.....+.+. .....
T Consensus 211 ~~~d~~~~~--~~~~~~~~~~~v~~~---~~~~~~~-~l~~~~------------~dg~v~vwd~~~~~~~~~~-~~~~~ 271 (814)
T 3mkq_A 211 KIWDYQTKS--CVATLEGHMSNVSFA---VFHPTLP-IIISGS------------EDGTLKIWNSSTYKVEKTL-NVGLE 271 (814)
T ss_dssp EEEETTTTE--EEEEEECCSSCEEEE---EECSSSS-EEEEEE------------TTSCEEEEETTTCSEEEEE-CCSSS
T ss_pred EEEECCCCC--EEEEECCCCCCEEEE---EECCCCC-EEEEEE------------CCCEEEEEECCCCCEEEEE-ECCCC
T ss_conf 999999991--889984788887899---9859999-999990------------8996999989999477784-06888
Q ss_pred CCCCCCCCCCEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE-----CCEEEEEECCCCCC---CC
Q ss_conf 457655676213--30565333777633466533332333564222452-236870-----83378864478863---22
Q 000424 322 KSAPISRLPLIT--IFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPV-RAFYVD-----GINLVAYNLCSGAD---SI 390 (1525)
Q Consensus 322 ~~~~~~~~p~~~--i~~~~~~~~~~~vv~~~~~e~~~f~~~~~v~~~~~-~~~y~~-----~~~i~~~~l~~g~~---~~ 390 (1525)
.++.+...|-.. +...+.+.. .++..+..+...+ ...+. ...+.- ...+....+..... ..
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDNG--FTVLSLGNDEPTL------SLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETTE--EEEEECSCCSCCE------EECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred CEEEEEECCCCCCEEEEEEECCC--EEEEECCCCCCEE------EECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 67999992499950999990798--7999767997416------777998789977636641124665304655555676
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCC-CCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 01232136997122162024368751899996216885119999832411013467-98865560698379999189994
Q 000424 391 YRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSK-SSTVKGRDAAFIGPNEDQFAILD 469 (1525)
Q Consensus 391 ~~~L~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~-G~~~~g~~~~fig~~~n~yAvle 469 (1525)
...+..+.++..+..+..+.+||+|+++++++ ++.+.+|.. ..|+.+. | ...+++| +++.+.+|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-----~~~~~i~~~---~~~~~~~~~---~i~~~~~-spdg~~la~~~ 411 (814)
T 3mkq_A 344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-----DGEYVIYTA---LAWRNKAFG---KCQDFVW-GPDSNSYALID 411 (814)
T ss_dssp CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-----TTEEEEEET---TTTEEEEEE---ECSEEEE-CTTSSCEEEEC
T ss_pred CCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-----CCEEEEEEC---CCCCCCCCC---CEEEEEE-ECCCCEEEEEE
T ss_conf 20146511788765774068999999899942-----988999987---454456799---5479999-47998599996
Q ss_pred CCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 89974999973871124321026875457886665655545774333333431521047765168862498699985033
Q 000424 470 DDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQ 549 (1525)
Q Consensus 470 ~~~~~i~Iy~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~~l~~~~~~~~i~~~~~~~ 549 (1525)
.++ .|++|+.+ .+.... +. .+.+..+++|+ +.|+.++.++.|.+
T Consensus 412 ~~g-~v~l~~~~--------~~~~~~-------------v~-----~~~~s~dg~~~----~~l~~~~~d~~v~~----- 455 (814)
T 3mkq_A 412 ETG-QIKYYKNF--------KEVTSW-------------SV-----PMHSAIDRLFS----GALLGVKSDGFVYF----- 455 (814)
T ss_dssp TTC-CEEEEETT--------EECTTC-------------CC-----CCSSCCCEEEC----SSSEEEEETTEEEE-----
T ss_pred CCC-CEEEEECC--------CCCCCE-------------EE-----CCCCCCCCEEC----CEEEEEECCCEEEE-----
T ss_conf 898-39999777--------775243-------------97-----37867552365----46999966998999-----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEE------EEEEEEEECCCHHHH----HCCCCCCC
Q ss_conf 34433345642223556613369403422889997136775089999------420299980424666----40455568
Q 000424 550 GYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVL------TTQRVLIVSADLDIL----ASSSTKFD 619 (1525)
Q Consensus 550 ~yd~~t~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~------t~~~i~i~~~~l~~l----~~~~~~~~ 619 (1525)
||+.++. ..+.+..... .|.|+.+ |..+++. ++++++++.++.+.. ......++
T Consensus 456 -~d~~~~~---------~~~~~~~~~~----~v~~s~d--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (814)
T 3mkq_A 456 -FDWDNGT---------LVRRIDVNAK----DVIWSDN--GELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDS 519 (814)
T ss_dssp -ECTTTCC---------EEEEESSCEE----EEEECTT--SSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTT
T ss_pred -EECCCCC---------EEEEEECCCC----EEEECCC--CCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCC
T ss_conf -9987695---------9999735888----7999699--9999999867666774289999546886666641687621
Q ss_pred C-----------CCCCCEEEEEECCEEEEECC-CCCEEEEECCCEEEEEEECCCCEEEEEEEC--CCEEEECCCCCCCCC
Q ss_conf 8-----------99861146551587999724-441789407933159981389559999705--838991379889345
Q 000424 620 K-----------GLPSFRSLLWVGPALLFSTA-TAISVLGWDGKVRNILSISMPNAVLVGALN--DRLLLANPTEINPRQ 685 (1525)
Q Consensus 620 ~-----------~~~~IkSg~Wvg~~fIYtT~-t~l~Yl~~~G~~~~I~~l~~~~~yLlgyl~--~Ri~l~~~~~~~p~~ 685 (1525)
+ ..++|+|+.|++++|||+|. ++++|++ +++.+++.+++. ++|++||.+ +|++++
T Consensus 520 ~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~--------- 588 (814)
T 3mkq_A 520 EGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFV-GGKTYNLAHYTK-EMYLLGYLARDNKVYLA--------- 588 (814)
T ss_dssp TBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEE-TTEEEEEEECSS-CCEEEEEEGGGTEEEEE---------
T ss_pred CCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEEEE-CCEEEEEEECCC-CEEEEEEEECCCEEEEE---------
T ss_conf 2502221364576427876598088899976887089996-986689999896-67999998329999999---------
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC-----HHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 7860697101110245777433456777886538999999982-04778889-----55789998199984000112012
Q 000424 686 KKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITS-RFDSLRIT-----PRSLDILAKGPPVCGDLAVSLSQ 759 (1525)
Q Consensus 686 dk~~~I~s~~l~llE~ll~g~a~~~~~~~~t~~lr~~l~~~~~-~~~s~~i~-----~~~l~~L~~~~~~~~elAl~ls~ 759 (1525)
+++.++..+.+..-++ . |+ ++.+++++..+.. .++. +. +....+|.+ .|++|.|+++++
T Consensus 589 d~~~~~~~~~l~~~~~-~---------~~-~~~~~~~~~~a~~~~l~~--i~~~~~~~~~~~~l~~--~~~~~~a~~~~~ 653 (814)
T 3mkq_A 589 DREVHVYGYEISLEVL-E---------FQ-TLTLRGEIEEAIENVLPN--VEGKDSLTKIARFLEG--QEYYEEALNISP 653 (814)
T ss_dssp CTTCCEEEEECCHHHH-H---------HH-HHHHTTCHHHHHHHTGGG--CCCHHHHHHHHHHHHH--TTCHHHHHHHCC
T ss_pred CCCCCEEEEEECCHHH-H---------HH-HHHHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHH--CCCHHHHEECCC
T ss_conf 2888879999890999-9---------96-998707999999888742--8846789999999986--898689605278
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 58877810245687642998899998898610158999999982678979999999998199579999999972055789
Q 000424 760 AGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESIL 839 (1525)
Q Consensus 760 ~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~kwk~Lg~~AL~~G~~~lAeec~qk~~d~~~Ll 839 (1525)
|+.+||++|+++|+++.|+++++... ....|++||++||.+|++++|++||++++|+++|.
T Consensus 654 -----~~~~~f~~~l~~~~~~~A~~~~~~~~--------------~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~ 714 (814)
T 3mkq_A 654 -----DQDQKFELALKVGQLTLARDLLTDES--------------AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLF 714 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHTTCC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred -----CCCHHEEHHHHCCCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
T ss_conf -----93142502145099999999998617--------------67689999999998499899999998702713558
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCHHHHH---------HHHHHHHHCCCCCCCCHHHHHHCCCC--CCCC-CCCC
Q ss_conf 999770899999999999998059904899---------99999766067862002343200124--9999-9878
Q 000424 840 DLFICHLNPSAMRRLAQRLEEEGANPELRR---------YCERILRVRSTGWTQGIFANFAAESM--VPKG-PEWG 903 (1525)
Q Consensus 840 lLy~~~gd~e~L~kLa~~ae~~g~~~~~~~---------~c~~il~~~~~~~~~~~~a~~~a~s~--~~~~-~e~~ 903 (1525)
+||.++||.+++.+|+++|+.+|....+.. .|++++...++-.++..+|..+.+.. ++.- -+|+
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~ 790 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWK 790 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9987729999999999999985866799999988099999999999869947899999870997578899999999
No 4
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=223.54 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=128.3
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 11201258877810245687642998899998898610158999999982678979999999998199579999999972
Q 000424 754 AVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIA 833 (1525)
Q Consensus 754 Al~ls~~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~kwk~Lg~~AL~~G~~~lAeec~qk~~ 833 (1525)
||++++ |+++||+|||++|||+.|+++|++.+ ..++||+||++||++||+++||+||++++
T Consensus 1 AL~~~~-----D~~~rF~LAL~lg~l~~A~e~a~~l~--------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 1 ALQFVQ-----DPHIRFDLALEYGNLDAALDEAKKLN--------------DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CCTTSS-----CHHHHHHHHHHTTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCCCC-----CHHHHHHHHHHCCCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 966567-----83889999995599999999999808--------------89999999999999599699999999848
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 055789999770899999999999998059904899----------9999976606786200234320012499999878
Q 000424 834 DYESILDLFICHLNPSAMRRLAQRLEEEGANPELRR----------YCERILRVRSTGWTQGIFANFAAESMVPKGPEWG 903 (1525)
Q Consensus 834 d~~~LllLy~~~gd~e~L~kLa~~ae~~g~~~~~~~----------~c~~il~~~~~~~~~~~~a~~~a~s~~~~~~e~~ 903 (1525)
||++|+|||+++||.++|++|+++|+.+| +++++| .|..+|...++-.++.+||.+|.++ |.+
T Consensus 62 D~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~------~~a 134 (177)
T 3mkq_B 62 SFDKLSFLYLVTGDVNKLSKMQNIAQTRE-DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE------AAA 134 (177)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH------HHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH------HHH
T ss_conf 89989999998488999999999999776-57799999998499999999999779848999999984968------999
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCEEEECCCCCCC
Q ss_conf 996124247988993201001334455457999-998200123101103546631
Q 000424 904 GGNWEIKTPTNLKSIPQWELATEVVPYMRTDDG-PIPSIISDHVGIYLGSIKGRG 957 (1525)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ylg~~~~~~ 957 (1525)
.+|++..+. ++++. ++|-+..+.. +||+++.... ++||.+.
T Consensus 135 ---~~~~~~~~~-~~~~~-----~~p~~~~~~~~~p~~~~~~~~----~nwp~~~ 176 (177)
T 3mkq_B 135 ---SAFLEQAEV-DEQDV-----TLPDQMDASNFVQRPVISKPL----EKWPLKE 176 (177)
T ss_dssp ---HHHHHHTTC-CGGGC-----CCCSCCCCSCCSCCCCCSSCC----SSCCBCC
T ss_pred ---HHHHHHHCC-CCCCC-----CCCCCCCCCCCCCCCCCCCCC----CCCCCCC
T ss_conf ---999998377-65545-----688767755689899877777----8998787
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=216.23 Aligned_cols=530 Identities=10% Similarity=0.065 Sum_probs=293.6
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 79689999707999799998416349999964188466698068999969999938999899998898299998699909
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~ 85 (1525)
.+.-.+++|+|++.+++++. .+.++.+|+. +.+.....+.+ |...|.+++|+|++.++++++.|++|++||+.++++
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~-~d~~i~vw~~-~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCG-ADKTLQVFKA-ETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEET-TTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCCEEEEEEC-CCCCEEEEECC-CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 66489999879999899994-8894999998-99978887606-777789999926999899981899599987799936
Q ss_pred EEEEE-CCCCEEECCCEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99995-27853665730099907--9989999958990999968889850157501257684899990899999999789
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 86 l~tL~-H~~~V~l~~~~sVaFsP--dg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~D 162 (1525)
+.++. |...|. +++|+| ++..+++++.|++|++||+.+ ..+...+.+|...|++++|+|+++++++++.|
T Consensus 692 ~~~~~~~~~~v~-----~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 692 VHTYDEHSEQVN-----CCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp EEEEECCSSCEE-----EEEECSSSSCCEEEEEETTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred EEEECCCCCCEE-----EEEEECCCCCEEEEEEECCCEEEEEECCC--CCHHHEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 899958997379-----99984089965999980897099998999--63422012777978899992599989999789
Q ss_pred CCEEEEEEEEEC-----C-CC------------CCCCCCCCCCCCCCCCCCC--C--CCCCCCCCCCEE-----CCCCEE
Q ss_conf 971578711212-----8-99------------9997532125787311243--4--400135885111-----289906
Q 000424 163 GSLQVWKTRVII-----N-PN------------RPPMQANFFEPASIESIDI--P--RILSQQGGEAVY-----PLPRVR 215 (1525)
Q Consensus 163 gtIkIWDlr~~~-----~-p~------------~~~~~a~~f~p~gI~Sidi--~--~iLs~~gG~~vy-----~l~~V~ 215 (1525)
++|++||++... . .. ........|.+++-..+.. . .++....+.... ....+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEE
T ss_conf 85999968888655302023210246776445650179999978998899975895999995689723577478777607
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99991589728998304556876433300003474254410023347851001100124788542003588998875211
Q 000424 216 ALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHL 295 (1525)
Q Consensus 216 ~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~ 295 (1525)
.+.|+|..+.++ +++.+..++.|...++. ...++++|.+.+.++ .+.+.+.. ++..
T Consensus 845 ~~~~sp~~~~l~------~~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~~v---~~spdg~~-l~s~------------ 900 (1249)
T 3sfz_A 845 YCDFSPYDHLAV------IALSQYCVELWNIDSRL--KVADCRGHLSWVHGV---MFSPDGSS-FLTA------------ 900 (1249)
T ss_dssp EEEECSSTTEEE------EECSSSCEEEEETTTTE--EEEEECCCSSCEEEE---EECTTSSE-EEEE------------
T ss_pred EEEECCCCCEEE------EEECCCEEEEEECCCCC--EEEECCCCCCCEEEE---EECCCCCE-EEEE------------
T ss_conf 999827888899------99479869999867895--653227876656899---99899998-9999------------
Q ss_pred CCCCCEEEEHHHHHCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC--EE
Q ss_conf 5897236002532100000011566545765567621330565333777633466533332333564---222452--23
Q 000424 296 KGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENR---VLHYPV--RA 370 (1525)
Q Consensus 296 ~~~~~~~I~di~k~~~i~s~~~d~~~~~~~~~~~p~~~i~~~~~~~~~~~vv~~~~~e~~~f~~~~~---v~~~~~--~~ 370 (1525)
..++.+.+||+................. ....+...+..... .....+. ........+..+.. +...+. .+
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDV--VFQENETMVLAVDN-IRGLQLI-AGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEE--EEETTEEEEEEEES-SSSEEEE-EESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred ECCCEEEEEECCCCCEEEEECCCCEEEE--EECCCCCEEEEECC-CCCEEEE-ECCCCEEEECCCCCEEEEEECCCCCEE
T ss_conf 5897289887466520102113310368--97599868998137-7624898-447650897256727899995899779
Q ss_pred EEE-ECCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 687-0833788644788632201232136997122162024368751899996216885119999832411013467988
Q 000424 371 FYV-DGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSST 449 (1525)
Q Consensus 371 ~y~-~~~~i~~~~l~~g~~~~~~~L~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~G~~ 449 (1525)
... .+..|..+++.++... .. ..+. .-....+.++|+|++++.++. ++.+.+|-..+.. .....+..
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~--~~----~~~h-~~~v~~l~~s~dg~~l~s~~~----dg~i~vwd~~~~~-~~~~~~~~ 1044 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVF--SS----GVGH-KKAVRHIQFTADGKTLISSSE----DSVIQVWNWQTGD-YVFLQAHQ 1044 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCE--EE----CCCC-SSCCCCEEECSSSSCEEEECS----SSBEEEEETTTTE-EECCBCCS
T ss_pred EEECCCCCEEEEECCCCCEE--EE----CCCC-CCCEEEEEECCCCCEEEEECC----CCEEEEEECCCCC-EEEEECCC
T ss_conf 99869998899975787234--43----0367-771689999899998999869----9879999879996-68985278
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 65560698379999189994899749999738711243210268754578866656555457743333334315210477
Q 000424 450 VKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPI 529 (1525)
Q Consensus 450 ~~g~~~~fig~~~n~yAvle~~~~~i~Iy~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl 529 (1525)
-.-.+++|. ++ +.++.-..++ .|++++....... ..+.+. ...+..+-+.|-
T Consensus 1045 ~~v~~~~~~-~~-~~l~~~~~dg-~v~vwd~~~~~~~--------------------~~~~~~-----~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1045 ETVKDFRLL-QD-SRLLSWSFDG-TVKVWNVITGRIE--------------------RDFTCH-----QGTVLSCAISSD 1096 (1249)
T ss_dssp SCEEEEEEC-SS-SEEEEEESSS-EEEEEETTTTCCC--------------------EEEECC-----SSCCCCEEECSS
T ss_pred CCEEEEEEC-CC-CCEEEEECCC-CEEEEECCCCCEE--------------------EEECCC-----CCCEEEEEECCC
T ss_conf 738999990-89-9589997889-6899888988655--------------------887466-----884899999899
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEE-EEEEECCCH
Q ss_conf 6516886249869998503334433345642223556613369403422889997136775089999420-299980424
Q 000424 530 ESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ-RVLIVSADL 608 (1525)
Q Consensus 530 ~~~l~~~~~~~~i~~~~~~~~yd~~t~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~t~~-~i~i~~~~l 608 (1525)
+..++.++.++.|.+ ||..+.... +.+. .+...|..+.|+.+ |.+++..+.+ .|.+.+..-
T Consensus 1097 ~~~l~s~s~d~~v~i------wd~~~~~~~---------~~l~-~h~~~v~~~~~s~d--g~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKI------WSFDLLSPL---------HELK-GHNGCVRCSAFSLD--GILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp SSSCEEECCSSCCCE------ECSSSSSCS---------BCCC-CCSSCEEEEEECSS--SSEEEEEETTSCCCEEESSS
T ss_pred CCEEEEECCCCCEEE------EECCCCCEE---------EEEC-CCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCC
T ss_conf 998999849994899------878985001---------2550-68776799999799--99899982899799998899
Q ss_pred H-HHHCCCC-----CCCCCCCCCEEEEEE
Q ss_conf 6-6640455-----568899861146551
Q 000424 609 D-ILASSST-----KFDKGLPSFRSLLWV 631 (1525)
Q Consensus 609 ~-~l~~~~~-----~~~~~~~~IkSg~Wv 631 (1525)
. .+..... ........|.+..|-
T Consensus 1159 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A 1159 GQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp SCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEEEC
T ss_conf 94578851444442102567428999997
No 6
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=210.93 Aligned_cols=678 Identities=13% Similarity=0.130 Sum_probs=352.9
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-C
Q ss_conf 796899997079997999984163499999641884666980689999699999389998999988982999986999-0
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-A 84 (1525)
Q Consensus 6 ~~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~-~ 84 (1525)
.+....++|+|.+.+++++.. +..+.+|+. +.+.....+.. |.+.|++++|+|+++++++++.|++|++||+.+. .
T Consensus 55 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~-~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 55 ETPVRAGKFIARKNWIIVGSD-DFRIRVFNY-NTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp SSCEEEEEEEGGGTEEEEEET-TSEEEEEET-TTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred CCCEEEEEEECCCCEEEEEEC-CCEEEEEEC-CCCCEEEEEEC-CCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 996889999689998999928-994999989-99958799816-899789999958999899992899899998999954
Q ss_pred EEEEEE-CCCCEEECCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEE
Q ss_conf 999995-27853665730099907-99899999589909999688898501575012576848999908--999999997
Q 000424 85 VHYTLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP--MLRLLVTLC 160 (1525)
Q Consensus 85 ~l~tL~-H~~~V~l~~~~sVaFsP-dg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsP--dg~lLvSgS 160 (1525)
....+. |...|. +++|+| ++..+++++.|++|++||+.+... .......|...+.+++|+| +++++++++
T Consensus 132 ~~~~~~~~~~~v~-----~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 132 LEQTFEGHEHFVM-----CVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp EEEEEECCSSCEE-----EEEEETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred EEEEECCCCCCEE-----EEEEECCCCCEEEEEECCCEEEEEECCCCCC-EEEEECCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf 8799837998688-----9999769999999994889499998999961-069835888977999999779998999993
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 89971578711212899999753212578731124344001358851112899069999158972899830455687643
Q 000424 161 RDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIK 240 (1525)
Q Consensus 161 ~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~ 240 (1525)
.|++|++||.+.... . ..+..+ ...+.++.|+|+.+.++ +++.|..
T Consensus 206 ~dg~i~~~d~~~~~~------~---------------~~~~~~-------~~~v~~~~~~~~~~~l~------~~~~dg~ 251 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSC------V---------------ATLEGH-------MSNVSFAVFHPTLPIII------SGSEDGT 251 (814)
T ss_dssp TTSEEEEEETTTTEE------E---------------EEEECC-------SSCEEEEEECSSSSEEE------EEETTSC
T ss_pred CCCEEEEEECCCCCE------E---------------EEECCC-------CCCEEEEEECCCCCEEE------EEECCCE
T ss_conf 899799999999918------8---------------998478-------88878999859999999------9908996
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCEEEEHHHHHCEEEEEECCC
Q ss_conf 330000347425441002334785100110012478854-2003588998875211589723600253210000001156
Q 000424 241 NRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSG-ILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEG 319 (1525)
Q Consensus 241 ~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g-~l~~~ql~~~~~~~~~~~~~~~~I~di~k~~~i~s~~~d~ 319 (1525)
++.|....++ ...+++.+.+.+.++ .+.+.+..- +..+ .+.++.++++.+..+..+ ++.
T Consensus 252 v~vwd~~~~~--~~~~~~~~~~~v~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~~~ 311 (814)
T 3mkq_A 252 LKIWNSSTYK--VEKTLNVGLERSWCI---ATHPTGRKNYIASG-------------FDNGFTVLSLGNDEPTLS--LDP 311 (814)
T ss_dssp EEEEETTTCS--EEEEECCSSSSEEEE---EECTTCGGGEEEEE-------------ETTEEEEEECSCCSCCEE--ECS
T ss_pred EEEEECCCCC--EEEEEECCCCCEEEE---EECCCCCCEEEEEE-------------ECCCEEEEECCCCCCEEE--ECC
T ss_conf 9999899994--777840688867999---99249995099999-------------079879997679974167--779
Q ss_pred CCCCCCC-CC----CCCEEE-ECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCE--EEEEECCEEEEEECCCCCCCC
Q ss_conf 6545765-56----762133-0565333777633466533332333-5642224522--368708337886447886322
Q 000424 320 HAKSAPI-SR----LPLITI-FDSKHQLKDIPVCQPFHLELNFFNR-ENRVLHYPVR--AFYVDGINLVAYNLCSGADSI 390 (1525)
Q Consensus 320 ~~~~~~~-~~----~p~~~i-~~~~~~~~~~~vv~~~~~e~~~f~~-~~~v~~~~~~--~~y~~~~~i~~~~l~~g~~~~ 390 (1525)
+++.... .. .-.... .....................-... ...+...+.. +....+..+..|++.....
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~-- 389 (814)
T 3mkq_A 312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRN-- 389 (814)
T ss_dssp SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEE--
T ss_pred CCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCC--
T ss_conf 987899776366411246653046555556762014651178876577406899999989994298899998745445--
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC---CCEEE
Q ss_conf 012321369971221620243687518999962168851199998324110134679886556069837999---91899
Q 000424 391 YRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNE---DQFAI 467 (1525)
Q Consensus 391 ~~~L~~~~~G~~e~~pq~l~hspngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~G~~~~g~~~~fig~~~---n~yAv 467 (1525)
. ..-....+.+||+++++++... ++.+.+|.. .. ...+ .-....| +++. +.++.
T Consensus 390 ------~----~~~~i~~~~~spdg~~la~~~~----~g~v~l~~~---~~--~~~~---~v~~~~~-s~dg~~~~~l~~ 446 (814)
T 3mkq_A 390 ------K----AFGKCQDFVWGPDSNSYALIDE----TGQIKYYKN---FK--EVTS---WSVPMHS-AIDRLFSGALLG 446 (814)
T ss_dssp ------E----EEEECSEEEECTTSSCEEEECT----TCCEEEEET---TE--ECTT---CCCCCSS-CCCEEECSSSEE
T ss_pred ------C----CCCCEEEEEEECCCCEEEEEEC----CCCEEEEEC---CC--CCCC---EEECCCC-CCCCEECCEEEE
T ss_conf ------6----7995479999479985999968----983999977---77--7524---3973786-755236546999
Q ss_pred EECCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEE------ECCCE
Q ss_conf 948997499997387112432102687545788666565554577433333343152104776516886------24986
Q 000424 468 LDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFA------CDGDQ 541 (1525)
Q Consensus 468 le~~~~~i~Iy~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~~l~~~------~~~~~ 541 (1525)
...+ ..|.+|+....... ..++ .....+.|.|-+..|+.. +.+..
T Consensus 447 ~~~d-~~v~~~d~~~~~~~--------------------~~~~--------~~~~~v~~s~dg~~la~~~~~~~~~~~~~ 497 (814)
T 3mkq_A 447 VKSD-GFVYFFDWDNGTLV--------------------RRID--------VNAKDVIWSDNGELVMIVNTNSNGDEASG 497 (814)
T ss_dssp EEET-TEEEEECTTTCCEE--------------------EEES--------SCEEEEEECTTSSEEEEEECCCSSCSCSE
T ss_pred EECC-CEEEEEECCCCCEE--------------------EEEE--------CCCCEEEECCCCCEEEEEECCCCCCCCEE
T ss_conf 9669-98999998769599--------------------9973--------58887999699999999986766677428
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCEEEEEEECCCCCCCEEEEEEE--EEEEEECCCHHHHHCCCCC
Q ss_conf 99985033344333456422235566133694--0342288999713677508999942--0299980424666404555
Q 000424 542 IGMAKLVQGYRLSARAGHYLQTKSEGKKSIKL--KVTEVMLKVAWQETQRGYVAGVLTT--QRVLIVSADLDILASSSTK 617 (1525)
Q Consensus 542 i~~~~~~~~yd~~t~~~~~i~~~~e~~r~i~~--~~~e~v~~V~Ws~~~~g~~vaI~t~--~~i~i~~~~l~~l~~~~~~ 617 (1525)
+.+.++.+.+......+. +....+..+.++. ...+.+....|.++ +-|-+. .++..+
T Consensus 498 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s~~w~~~-----~~i~~t~~~~~~~~------------- 558 (814)
T 3mkq_A 498 YTLLFNKDAYLEAANNGN-IDDSEGVDEAFDVLYELSESITSGKWVGD-----VFIFTTATNRLNYF------------- 558 (814)
T ss_dssp EEEEECHHHHHHHHHHTC-CBTTTBCTTTEEEEEEECSCCSEEEEETT-----EEEEECTTSEEEEE-------------
T ss_pred EEEEECHHHHHHHHHCCC-CCCCCCHHHHEEEEEEECCEEEEEEEECC-----EEEEECCCCEEEEE-------------
T ss_conf 999954688666664168-76212502221364576427876598088-----89997688708999-------------
Q ss_pred CCCCCCCCEEEEEECCEEEEECCCCCEEEEE-CCCEEEEEEECCC-CEEEEEEECCCEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf 6889986114655158799972444178940-7933159981389-5599997058389913798893457860697101
Q 000424 618 FDKGLPSFRSLLWVGPALLFSTATAISVLGW-DGKVRNILSISMP-NAVLVGALNDRLLLANPTEINPRQKKGIEIKSCL 695 (1525)
Q Consensus 618 ~~~~~~~IkSg~Wvg~~fIYtT~t~l~Yl~~-~G~~~~I~~l~~~-~~yLlgyl~~Ri~l~~~~~~~p~~dk~~~I~s~~ 695 (1525)
..++.-+..+..+..|++. .-+...+..++.. .+++.. +....+.. ... -. +++..- .
T Consensus 559 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~-~~~-~~--~~~~~~---a 618 (814)
T 3mkq_A 559 ------------VGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYE-ISLEVLEF-QTL-TL--RGEIEE---A 618 (814)
T ss_dssp ------------ETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEE-CCHHHHHH-HHH-HH--TTCHHH---H
T ss_pred ------------ECCEEEEEEECCCCEEEEEEEECCCEEEEECCCCCEEEEE-ECCHHHHH-HHH-HH--HCCHHH---H
T ss_conf ------------6986689999896679999983299999992888879999-89099999-699-87--079999---9
Q ss_pred CC-CH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC----
Q ss_conf 11-02---4-577743345677788653899999998204778889557899981999840001120125887781----
Q 000424 696 VG-LL---E-PLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQ---- 766 (1525)
Q Consensus 696 l~-ll---E-~ll~g~a~~~~~~~~t~~lr~~l~~~~~~~~s~~i~~~~l~~L~~~~~~~~elAl~ls~~~~~~d~---- 766 (1525)
.. ++ + .-. +..+..+++. .. ..+.+.+... .+...-.++.. .|..+.|++++... +.
T Consensus 619 ~~~~l~~i~~~~~--~~~~~~~l~~-~~---~~~~a~~~~~----~~~~~f~~~l~-~~~~~~A~~~~~~~---~~~~~W 684 (814)
T 3mkq_A 619 IENVLPNVEGKDS--LTKIARFLEG-QE---YYEEALNISP----DQDQKFELALK-VGQLTLARDLLTDE---SAEMKW 684 (814)
T ss_dssp HHHTGGGCCCHHH--HHHHHHHHHH-TT---CHHHHHHHCC----CHHHHHHHHHH-HTCHHHHHHHHTTC---CCHHHH
T ss_pred HHHHHHCCCCHHH--HHHHHHHHHH-CC---CHHHHEECCC----CCCHHEEHHHH-CCCHHHHHHHHHHH---CCHHHH
T ss_conf 9888742884678--9999999986-89---8689605278----93142502145-09999999999861---767689
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 024568764299889999889861015899999---99826789799999999981995799999999720557899997
Q 000424 767 VLRGIYAIKALRFSTALSVLKDEFLRSRDYPKC---PPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFI 843 (1525)
Q Consensus 767 ~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~---~~~~~~~~kwk~Lg~~AL~~G~~~lAeec~qk~~d~~~LllLy~ 843 (1525)
..--++|++.++++.|.+...... |+... -...+...+++.+++.|+..|+++.|+.||.+++|++...-+|.
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~----d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAH----DLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT----CHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999998499899999998702----7135589987729999999999999985866799999988099999999999
Q ss_pred HHCCHHHHHHHHHH
Q ss_conf 70899999999999
Q 000424 844 CHLNPSAMRRLAQR 857 (1525)
Q Consensus 844 ~~gd~e~L~kLa~~ 857 (1525)
-++.-+.=-.||+.
T Consensus 761 ~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 761 KSQRFSEAAFLGST 774 (814)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
T ss_conf 86994789999987
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=207.11 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=147.1
Q ss_pred CEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCE
Q ss_conf 669806899996999993899989999889829999869990999995-2785366573009990799899999589909
Q 000424 43 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121 (1525)
Q Consensus 43 ~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtI 121 (1525)
...+.+ |..+|++++|+|+++++++|+.|++|++||+.+++...++. |.+.|. +++|+|++.++++++.|++|
T Consensus 101 ~~~l~g-h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-----~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 101 KYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-----DISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEEC-CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-----EEEECTTSSEEEEEETTSCC
T ss_pred EEEECC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEECCCCCEEEEEECCCEE
T ss_conf 076616-677689999969999899993898599998999937788816678687-----89985999999999189819
Q ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99968889850157501257684899990899999999789971578711212899999753212578731124344001
Q 000424 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILS 201 (1525)
Q Consensus 122 kVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs 201 (1525)
++||+.+ ..++..+.+|...|.+++|+|++.++++++.|++|++||++.... .. .+.
T Consensus 175 ~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~------~~---------------~~~ 231 (410)
T 1vyh_C 175 KLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------VK---------------TFT 231 (410)
T ss_dssp CEEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------EE---------------EEE
T ss_pred EEEECCC--CCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE------EE---------------EEE
T ss_conf 9995899--826699828999778999967999999996899699998999948------99---------------992
Q ss_pred CCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 35885111289906999915897289983045568764333000034742544100233478510
Q 000424 202 QQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 202 ~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
.+ ...|..+.++|+.++++ +++.|..++.|..+.+. +..++++|...+.+
T Consensus 232 ~h-------~~~v~~~~~~~~g~~l~------s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 232 GH-------REWVRMVRPNQDGTLIA------SCSNDQTVRVWVVATKE--CKAELREHRHVVEC 281 (410)
T ss_dssp CC-------SSCEEEEEECTTSSEEE------EEETTSCEEEEETTTCC--EEEEECCCSSCEEE
T ss_pred CC-------CCCEEEEEECCCCCEEE------EECCCCEEEEEECCCCC--EEEEECCCCCEEEE
T ss_conf 78-------86289999989999999------99189909999898974--36673378745899
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=205.75 Aligned_cols=245 Identities=14% Similarity=0.144 Sum_probs=178.1
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-
Q ss_conf 5796899997079997999984163499999641884666980689999699999389998999988982999986999-
Q 000424 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY- 83 (1525)
Q Consensus 5 ~~~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~- 83 (1525)
..+.-.+++|+|++..+.++. +.++.+|+. +.+.....+.+ |.+.|++++|+|++.++++|+.|++|++||+.+.
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~--~~~v~l~~~-~~~~~~~~~~~-h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCN--GTSVYTVPV-GSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEE--TTEEEEEET-TCSSCCEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCCCEEEEEECCCCCEEEECC--CCEEEEECC-CCCCCCEEECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 068236976679999799679--997999457-87242737658-99865999999999689999489978994898984
Q ss_pred -CEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECC----CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCC-EE
Q ss_conf -0999995-2785366573009990799899999589----909999688898501575012576848999908999-99
Q 000424 84 -AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR----GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LL 156 (1525)
Q Consensus 84 -~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~D----gtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsPdg~-lL 156 (1525)
....++. |...|. +++|+|++..+++++.+ ++|++||.... ...+.+|...|++++|+|+++ .|
T Consensus 93 ~~~~~~~~~~~~~v~-----~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~----~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 93 HILKTTIPVFSGPVK-----DISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp CCEEEEEECSSSCEE-----EEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEE
T ss_pred CEEEEEECCCCCCEE-----EEEECCCCCEEEEEECCCCCEEEEEEEECCCC----CCEECCCCCCCEEEEECCCCCEEE
T ss_conf 156676225578448-----99989999979999899773669999638997----632547889836999889998299
Q ss_pred EEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 99978997157871121289999975321257873112434400135885111289906999915897289983045568
Q 000424 157 VTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGG 236 (1525)
Q Consensus 157 vSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~ 236 (1525)
++++.|++|++||.+.... ...+..+. ..|+++.|+|+..+++ +++
T Consensus 164 ~s~s~D~~v~lwd~~~~~~---------------------~~~l~~H~-------~~V~~v~fspdg~~la------s~s 209 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKF---------------------KSTFGEHT-------KFVHSVRYNPDGSLFA------STG 209 (611)
T ss_dssp EEEETTSCEEEEETTTBEE---------------------EEEECCCS-------SCEEEEEECTTSSEEE------EEE
T ss_pred EEEECCCEEEEEECCCCEE---------------------EEEECCCC-------CCEEEEEECCCCCEEE------EEE
T ss_conf 9992898099997999757---------------------66520025-------7169999979999899------998
Q ss_pred CCCCCCCCCCCCCCEEEEEEEC-------CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHH
Q ss_conf 7643330000347425441002-------334785100110012478854200358899887521158972360025321
Q 000424 237 DNIKNRAAYTREGRKQLFAVLQ-------SARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARK 309 (1525)
Q Consensus 237 Dd~~~k~~~~~eg~~q~~~tlq-------~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k~ 309 (1525)
.|..++.|...+++. ..++. +|.+.+.+ ..+.+.+.. ++.. ..|+.+++||+...
T Consensus 210 ~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~---v~~spdg~~-l~s~------------s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFG---LTWSPDGTK-IASA------------SADKTIKIWNVATL 271 (611)
T ss_dssp TTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEE---EEECTTSSE-EEEE------------ETTSEEEEEETTTT
T ss_pred CCCCEEEEECCCCCE--EEEECCCCCCCCCCCCCEEE---EEECCCCCE-EEEE------------ECCCEEEEEECCCC
T ss_conf 999199988999828--66513664323566787899---999799999-9999------------08980999968887
Q ss_pred CEEEE
Q ss_conf 00000
Q 000424 310 AFLYS 314 (1525)
Q Consensus 310 ~~i~s 314 (1525)
..+.+
T Consensus 272 ~~~~~ 276 (611)
T 1nr0_A 272 KVEKT 276 (611)
T ss_dssp EEEEE
T ss_pred CEEEE
T ss_conf 01344
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=204.80 Aligned_cols=248 Identities=17% Similarity=0.181 Sum_probs=185.3
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 79689999707999799998416349999964188466698068999969999938999899998898299998699909
Q 000424 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~~~hla~hP~~p~Vl~s~~~r~sV~ii~tveggk~~tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~ 85 (1525)
.+.-..++|||.+++++++. .+.++++|+. +.+.....+.. |..+|++++|+|+++++++|+.|++|++||+.++++
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~-~dg~v~lWd~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTL-YSGRVELWNY-ETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEE-TTSEEEEEET-TTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEC-CCCCEEEEEC-CCCCEEEEEEC-CCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 88568999899998799982-7996999878-88826677605-677488999968999899988999799999999967
Q ss_pred EEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC-CCCEEEEEECCC
Q ss_conf 99995-2785366573009990799899999589909999688898501575012576848999908-999999997899
Q 000424 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDG 163 (1525)
Q Consensus 86 l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIkVWDl~s~~~s~i~~l~gH~~~VtsIafsP-dg~lLvSgS~Dg 163 (1525)
+.++. |...|. +++|+|+++++++++.|++|++||+++. ..+...+.+|...|++++|+| ++.+|++|+.|+
T Consensus 90 ~~~~~~h~~~v~-----~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 90 VVDFEAHPDYIR-----SIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp EEEEECCSSCEE-----EEEECSSSSEEEEEETTSCEEEEEGGGT-TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEEECCCCCEE-----EEEECCCCCEEEEECCCCEEEEEECCCC-CCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf 899807998089-----9999599999999879981999989999-2231010566895799998889999899991898
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCC
Q ss_conf 7157871121289999975321257873112434400135885111289906999915--89728998304556876433
Q 000424 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP--RLNLAVLLFANFTGGDNIKN 241 (1525)
Q Consensus 164 tIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iLs~~gG~~vy~l~~V~~v~~HP--~~Nliai~F~~~s~~Dd~~~ 241 (1525)
+|++||++.... . + .+.. + ....+..+.++| ..++++ ++++|..+
T Consensus 164 ~v~iwd~~~~~~-----~---~-------------~~~~--~----~~~~v~~~~~~~~~~~~~l~------s~s~D~~i 210 (304)
T 2ynn_A 164 TVKVWSLGQSTP-----N---F-------------TLTT--G----QERGVNYVDYYPLPDKPYMI------TASDDLTI 210 (304)
T ss_dssp EEEEEETTCSSC-----S---E-------------EEEC--C----CTTCEEEEEECCSTTCCEEE------EEETTSEE
T ss_pred EEEEEECCCCCC-----C---C-------------EECC--C----CCCCEEEEEEEECCCCCEEE------EECCCCEE
T ss_conf 399998999976-----6---3-------------3216--8----74757789999869999999------98699919
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHCEEE
Q ss_conf 300003474254410023347851001100124788542003588998875211589723600253210000
Q 000424 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLY 313 (1525)
Q Consensus 242 k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k~~~i~ 313 (1525)
+.|..+.+ ++..++++|.+.+.++ .+.+.+. -++..- .|+.+.|||+.....+.
T Consensus 211 ~iWd~~~~--~~~~~~~~h~~~v~~~---~~~p~~~-~l~s~s------------~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 211 KIWDYQTK--SCVATLEGHMSNVSFA---VFHPTLP-IIISGS------------EDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp EEEETTTT--EEEEEEECCSSCEEEE---EECSSSS-EEEEEE------------TTSCEEEEETTTCCEEE
T ss_pred EEEECCCC--CCCEEECCCCCCEEEE---EECCCCC-EEEEEC------------CCCEEEEEECCCCCEEE
T ss_conf 99967898--6024647988888999---9889999-899993------------89959999899871456
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=200.42 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=133.6
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf 69806899996999993899989999889829999869990999995-27853665730099907998999995899099
Q 000424 44 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 44 tkik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDi~t~~~l~tL~-H~~~V~l~~~~sVaFsPdg~~LvSgS~DgtIk 122 (1525)
..+. +|.+.|.+++|+|+++++++|+.|++|++||..+++.+.++. |...|. +++|+|++.++++++.|++|+
T Consensus 609 ~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-----~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 609 LVVR-PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-----CCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp EEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSEEE
T ss_pred EEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEE-----EEEEECCCCEEEEEECCCEEE
T ss_conf 7871-6666489999879999899994889499999899978887606777789-----999926999899981899599
Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99688898501575012576848999908--9999999978997157871121289999975321257873112434400
Q 000424 123 AWDVSIERPSMIGIIQVGSQPITSVAWLP--MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRIL 200 (1525)
Q Consensus 123 VWDl~s~~~s~i~~l~gH~~~VtsIafsP--dg~lLvSgS~DgtIkIWDlr~~~~p~~~~~~a~~f~p~gI~Sidi~~iL 200 (1525)
+||+.+ ......+.+|...|.+++|+| +..++++++.|++|++||++.... . ..+
T Consensus 683 vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~------~---------------~~~ 739 (1249)
T 3sfz_A 683 IWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC------R---------------NTM 739 (1249)
T ss_dssp EEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE------E---------------EEE
T ss_pred EEECCC--CCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH------H---------------HEE
T ss_conf 987799--93689995899737999984089965999980897099998999634------2---------------201
Q ss_pred CCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 13588511128990699991589728998304556876433300003474
Q 000424 201 SQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGR 250 (1525)
Q Consensus 201 s~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~~~k~~~~~eg~ 250 (1525)
..+. ..|+++.|+|+.+.++ +++.|..++.|..+.++
T Consensus 740 ~~h~-------~~v~~~~~sp~~~~l~------s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 740 FGHT-------NSVNHCRFSPDDELLA------SCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp CCCS-------SCEEEEEECSSTTEEE------EEESSSEEEEEEGGGTE
T ss_pred CCCC-------CCEEEEEEECCCCEEE------EEECCCEEEEEECCCCC
T ss_conf 2777-------9788999925999899------99789859999688886
Done!