Query 000425
Match_columns 1525
No_of_seqs 452 out of 2767
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:52:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000425.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_201-205//hhsearch_pdb/000425hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_B Coatomer subunit alpha; 1.0 1 1 583.3 20.1 274 1100-1517 27-311 (320)
2 3mv2_A Coatomer subunit alpha; 1.0 1 1 579.5 17.4 272 1100-1517 39-320 (325)
3 3mkq_A Coatomer beta'-subunit; 1.0 1 1 488.8 65.7 720 6-903 13-790 (814)
4 3mkq_B Coatomer subunit alpha; 1.0 1 1 223.5 12.6 165 754-957 1-176 (177)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 215.6 49.9 530 6-631 615-1187(1249)
6 1vyh_C Platelet-activating fac 1.0 1 1 205.2 27.9 180 43-266 101-281 (410)
7 2ynn_A Coatomer subunit beta'; 1.0 1 1 203.8 29.0 217 6-266 13-233 (304)
8 1nr0_A Actin interacting prote 1.0 1 1 203.4 49.6 245 5-314 17-276 (611)
9 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 200.5 42.2 165 44-250 609-776 (1249)
10 3dm0_A Maltose-binding peripla 1.0 1 1 193.9 30.6 205 6-250 382-594 (694)
No 1
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=1.00 E-value=1 Score=583.32 Aligned_cols=274 Identities=16% Similarity=0.244 Sum_probs=245.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCC
Q ss_conf 68897222333479998899998778898999975354333347866889987876675689987011102551000012
Q 000425 1100 LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAA 1179 (1525)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1525)
+++|+||.+ |++|+|| +|+ +|
T Consensus 27 vaAGsFe~A----------------------------~~lLnrQ------------~Gi-------------------vn 47 (320)
T 3mkr_B 27 ILAGSFETA----------------------------MRLLHDQ------------VGV-------------------TQ 47 (320)
T ss_dssp HHTTCHHHH----------------------------HHHHHHH------------SCB-------------------CC
T ss_pred HHCCCHHHH----------------------------HHHHHHH------------HCC-------------------CC
T ss_conf 970689999----------------------------9999987------------385-------------------17
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 599985323212333345446865899989898778999-9999998899999753334789999999888999999887
Q 000425 1180 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLP-DGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQS 1258 (1525)
Q Consensus 1180 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1258 (1525)
|.|++..|++.|. . +++++| .+
T Consensus 48 f~PLk~~F~~~y~------------~-------s~~~l~~~~-------------------------------------- 70 (320)
T 3mkr_B 48 FGPYKQLFLQTYA------------R-------GRTTYQALP-------------------------------------- 70 (320)
T ss_dssp CGGGHHHHHHHHT------------T-------SCEEECSST--------------------------------------
T ss_pred CHHHHHHHHHHHH------------H-------HHHHCCCCC--------------------------------------
T ss_conf 5566999999999------------8-------752135778--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7888999999874322235688999999999999999987788866775146-999999998762199478999999999
Q 000425 1259 QVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAF 1337 (1525)
Q Consensus 1259 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~lk~gy~~~t~gkf~eAl~~Fr~iL 1337 (1525)
+++||..++++++++ +.+..++| .+|++++. .++||+||++||+|||+||+.+||+||
T Consensus 71 ---------~~p~l~~~~~r~~~~-----------~~~~~~lP-~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL 129 (320)
T 3mkr_B 71 ---------CLPSMYGYPNRNWKD-----------AGLKNGVP-AVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSIL 129 (320)
T ss_dssp ---------TSCCEEECCBTTTTT-----------CCSSSCCB-CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHCCCCCC-----------CCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ---------997402342178422-----------36545788-766689999999999999986578899999999999
Q ss_pred H----HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 8----882377305789999999999999970089999851037997202315899999986069999556799999999
Q 000425 1338 L----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTA 1413 (1525)
Q Consensus 1338 ~----~~v~~~~e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT~c~Lq~~H~~LaLr~A 1413 (1525)
| ++|++++|++|++++|.+||||++||+| |++||+ +++.+ +.+.+|++|||||||||+|||.|++|+||+|
T Consensus 130 ~~i~l~~v~~~~e~~e~~eli~icreYilal~i--El~Rr~-l~~~~--~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~A 204 (320)
T 3mkr_B 130 LSVPLLVVDNKQEIAEAQQLITICREYIVGLSM--ETERKK-LPKET--LEQQKRICEMAAYFTHSNLQPVHMILVLRTA 204 (320)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHH--HHHHTT-SCCCS--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-CCCCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 974501116687799999999999999999999--999974-36677--3048899999998664887489999999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEEECCCEECCC-CCCCCCCC
Q ss_conf 9999970039999999999981499-1269999999999973699874469--887894265055111169-99322689
Q 000425 1414 IKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDL 1489 (1525)
Q Consensus 1414 m~~~~K~kN~~tAa~fA~rLL~l~p-~~~~~~arkil~~ce~~~~d~~~i~--~~e~pf~iCa~tltpIy~-~~~v~Cp~ 1489 (1525)
|+++||+|||+||++||||||+++| +++++|||||+++|||+++|+++|| ++ +||+||++||||||+ +++|+|||
T Consensus 205 M~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~~~da~eidyD~~-~~f~iCa~s~tPIY~g~~~v~Cp~ 283 (320)
T 3mkr_B 205 LNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMH-NPFDICAASYRPIYRGKPVEKCPL 283 (320)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCBSSCCSCCTT-SCCCBBTTTCCBCCTTSCCEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 9999986019999999999986499989999999999998468987631478887-863021477765669998703789
Q ss_pred CCCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 983113789-9988643420223788787
Q 000425 1490 CGAKFSALS-APGCIICGMGSIKRSDALA 1517 (1525)
Q Consensus 1490 cgA~y~~~~-g~~C~iC~l~~IG~~~~~~ 1517 (1525)
|||+|+++| |++|+||++|+||+ ++.+
T Consensus 284 cgA~y~~~~kG~lC~vC~l~~IG~-~~~G 311 (320)
T 3mkr_B 284 SGACYSPEFKGQICKVTTVTEIGK-DVIG 311 (320)
T ss_dssp TCCEECGGGTTSBCTTTSSBBSSC-CCCC
T ss_pred CCCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 888636634899888785740287-6337
No 2
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=1.00 E-value=1 Score=579.50 Aligned_cols=272 Identities=17% Similarity=0.236 Sum_probs=243.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCC
Q ss_conf 68897222333479998899998778898999975354333347866889987876675689987011102551000012
Q 000425 1100 LIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAA 1179 (1525)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1525)
+++|+||.+ |++|+|| +|+ +|
T Consensus 39 vAAGsFetA----------------------------m~lLnrQ------------vGi-------------------vn 59 (325)
T 3mv2_A 39 VAAGAFDAA----------------------------VQALSKQ------------VGV-------------------VK 59 (325)
T ss_dssp HHTTCHHHH----------------------------HHHHHHH------------HCB-------------------CC
T ss_pred HHCCCHHHH----------------------------HHHHHHH------------HCC-------------------CC
T ss_conf 970689999----------------------------9999987------------385-------------------17
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59998532321233334544686589998989877899999999988999997533347899999998889999998877
Q 000425 1180 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1259 (1525)
Q Consensus 1180 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 1259 (1525)
|.|++..|++.|. . +++++|.-
T Consensus 60 f~PLk~~F~~~y~------------~-------s~~~l~~~--------------------------------------- 81 (325)
T 3mv2_A 60 LEPLKKYFTNIYE------------G-------CRTYIPST--------------------------------------- 81 (325)
T ss_dssp CGGGHHHHHHHHH------------H-------TEEEECCS---------------------------------------
T ss_pred CHHHHHHHHHHHH------------H-------HHHHCCCC---------------------------------------
T ss_conf 5566999999999------------8-------86203667---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 888999999874322235688999999999999999987788866775146-9999999987621994789999999998
Q 000425 1260 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL 1338 (1525)
Q Consensus 1260 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~lk~gy~~~t~gkf~eAl~~Fr~iL~ 1338 (1525)
|-.++|+...+++++++ +.++.+.| .+| +++. .++||+||++||+|||+||+.+||+|||
T Consensus 82 ------~~~lp~l~~~~~r~~~e-----------~~~~~~lP-~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 82 ------PCELPAQLGYVRAYDDT-----------VSEDQILP-YVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp ------STTSCCEEEECBSSCSS-----------SCGGGCCB-CCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCCCCCHHHHCCCCCC-----------CCCCCCCC-CCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ------77787612553077422-----------36546788-878-899999999999999865888999999999999
Q ss_pred ----HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf ----8823773057899999999999999700899998510379972023158999999860699995567999999999
Q 000425 1339 ----ALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAI 1414 (1525)
Q Consensus 1339 ----~~v~~~~e~~e~~~li~icreYilal~ll~El~R~~~l~~~~~~~~~~~R~lELaaYfT~c~Lq~~H~~LaLr~Am 1414 (1525)
++|++++|++|++++|.+||||++||+| |++||+ + ++++ ++ |++|||||||||+|||.|++|+||+||
T Consensus 143 ~i~l~~v~~~~e~~e~~eli~icrEYilal~i--El~Rr~-l-~~~~-~k---R~lELAAYFT~c~LQp~H~~LaLr~AM 214 (325)
T 3mv2_A 143 RITLLMVDDAEDEKLAHKILETAREYILGLSI--ELERRS-L-KEGN-TV---RMLELAAYFTKAKLSPIHRTNALQVAM 214 (325)
T ss_dssp HHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH--HHHHHT-C-CTTC-HH---HHHHHHHHGGGSCCCHHHHHHHHHHHH
T ss_pred HHHEEEECCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-C-CCCC-HH---HHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75302216677799999999999999999989--999873-2-7542-77---899999986648874899999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCEEEECCCEECCC-CCCCCCCCC
Q ss_conf 999970039999999999981499-1269999999999973699874469--887894265055111169-993226899
Q 000425 1415 KRNMEVQNYAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLC 1490 (1525)
Q Consensus 1415 ~~~~K~kN~~tAa~fA~rLL~l~p-~~~~~~arkil~~ce~~~~d~~~i~--~~e~pf~iCa~tltpIy~-~~~v~Cp~c 1490 (1525)
+++||+|||+||++||||||+++| +++++|||||+++|||+|+|+++|| ++ +||+||++||||||+ +++|+||||
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da~eidyD~~-~~F~iCa~s~tPIY~g~~~v~Cp~c 293 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPY-AKFDICAATYKPIYEDTPSVSDPLT 293 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCSSCCSCCTT-SCEEECTTTCCEEESSSCEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 999986009999999999986589989999999999998468987532688888-8731534775025699987037888
Q ss_pred CCEECCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 83113789-9988643420223788787
Q 000425 1491 GAKFSALS-APGCIICGMGSIKRSDALA 1517 (1525)
Q Consensus 1491 gA~y~~~~-g~~C~iC~l~~IG~~~~~~ 1517 (1525)
||+|+++| |++|+||+||+||+ ++.+
T Consensus 294 gA~y~~~~kG~lC~vC~l~~IG~-~a~G 320 (325)
T 3mv2_A 294 GSKYVITEKDKIDRIAMISKIGA-PASG 320 (325)
T ss_dssp CCEEEGGGTTSBCSSSSCBBTTC-CCCC
T ss_pred CCEECHHHCCCCCCCCCCCCCCC-CCCC
T ss_conf 88625634899888785742188-7635
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=488.80 Aligned_cols=720 Identities=18% Similarity=0.198 Sum_probs=485.7
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 79689999707999799998416349999964188466698068999969999928999899998898299998699919
Q 000425 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~~~~la~hP~~p~Vl~s~~~~~sV~v~~tiegg~~~t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~t~~~ 85 (1525)
.+....++|||.+++++++. .+..+.+|+. +.+.....+.. |..+|++++|+|++.++++++.|+.|++||+.+++.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~-~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTL-YSGRVEIWNY-ETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEE-TTSEEEEEET-TTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCCEEEEEEC-CCCCEEEEEEC-CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 98568999889999899994-7998999989-99916778733-899688999968999899992899499998999958
Q ss_pred EEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC-CCCEEEEEECCC
Q ss_conf 99995-2785366573009990899899999589909999688898501575012576848999908-999999997899
Q 000425 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDG 163 (1525)
Q Consensus 86 l~tL~-H~~~V~~~~a~sVaFsPdg~~LvSgS~DgtIrVWDl~t~~~s~i~~l~gH~~~V~sIafsP-dg~lLvSgS~Dg 163 (1525)
..++. |...|+ +++|+|+++++++++.|++|++||+.+. ......+.+|...|.+++|+| ++.++++++.|+
T Consensus 90 ~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 90 VVDFEAHPDYIR-----SIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEEECCSSCEE-----EEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEEECCCCCEE-----EEEEECCCCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 799816899789-----9999589998999928998999989999-5487998379986889999769999999994889
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCC
Q ss_conf 7158871111289999975321257873112434400135885111289906999915--89728998304556876433
Q 000425 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP--RLNLAVLLFANFTGGDNIKN 241 (1525)
Q Consensus 164 tIkIWDir~~~~p~~~~~~a~~f~p~gVesidi~~iLs~~gG~~vy~l~~V~~v~~HP--~~Nliai~F~~~s~~Dd~k~ 241 (1525)
+|++||++.... .. .+... ....+.++.|+| ..+.++ +++++..+
T Consensus 164 ~v~vwd~~~~~~-----~~----------------~~~~~------~~~~v~~~~~~~~~~~~~l~------~~~~dg~i 210 (814)
T 3mkq_A 164 TVKVWSLGQSTP-----NF----------------TLTTG------QERGVNYVDYYPLPDKPYMI------TASDDLTI 210 (814)
T ss_dssp EEEEEETTCSSC-----SE----------------EEECC------CTTCCCEEEECCSTTCCEEE------EECTTSEE
T ss_pred EEEEEECCCCCC-----EE----------------EEECC------CCCCEEEEEEEECCCCCEEE------EEECCCEE
T ss_conf 499998999961-----06----------------98358------88977999999779998999------99389979
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHCEEEEEECCCCC
Q ss_conf 30000347425441002334785100110012478854200358899887521158972360025321000000115665
Q 000425 242 RAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHA 321 (1525)
Q Consensus 242 k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k~~~i~s~~~d~~~ 321 (1525)
+.|..+++. ...++++|.+.+.++ .+++.+. -++... .++.+.+||+.....+.+. .....
T Consensus 211 ~~~d~~~~~--~~~~~~~~~~~v~~~---~~~~~~~-~l~~~~------------~dg~v~vwd~~~~~~~~~~-~~~~~ 271 (814)
T 3mkq_A 211 KIWDYQTKS--CVATLEGHMSNVSFA---VFHPTLP-IIISGS------------EDGTLKIWNSSTYKVEKTL-NVGLE 271 (814)
T ss_dssp EEEETTTTE--EEEEEECCSSCEEEE---EECSSSS-EEEEEE------------TTSCEEEEETTTCSEEEEE-CCSSS
T ss_pred EEEECCCCC--EEEEECCCCCCEEEE---EECCCCC-EEEEEE------------CCCEEEEEECCCCCEEEEE-ECCCC
T ss_conf 999999991--889984788887899---9859999-999990------------8996999989999477784-06888
Q ss_pred CCCCCCCCCCEE--EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE-----CCEEEEEECCCCCC---CC
Q ss_conf 457655676213--30565333777633466533332333564222452-236870-----83378864478863---22
Q 000425 322 KSAPISRLPLIT--IFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPV-RAFYVD-----GINLVAYNLCSGAD---SI 390 (1525)
Q Consensus 322 k~~~~~~~p~~~--i~~~~~~~~~~~vv~~~~~e~~~f~~~~~v~~~~~-~~~y~~-----~~~i~~~~l~~g~~---~~ 390 (1525)
.++.+...|-.. +...+.+.. .++.....+...+ ...+. ...+.- ...+....+..... ..
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDNG--FTVLSLGNDEPTL------SLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETTE--EEEEECSCCSCCE------EECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred CEEEEEECCCCCCEEEEEEECCC--EEEEECCCCCCEE------EECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 67999992499950999990798--7999767997416------777998789977636641124665304655555676
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCC-CCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 01232136997122162024368751899996216885119999832411013467-98865560698379999189994
Q 000425 391 YRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSK-SSTVKGRDAAFIGPNEDQFAILD 469 (1525)
Q Consensus 391 ~~~L~~~~~G~~e~~pq~l~~spngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~-G~~~~g~~~~fig~~~n~yAvle 469 (1525)
...+..+.++..+..+..+.+||+|+++++++ ++.+.+|.. ..|+... | ...+++| +++.+.+|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-----~~~~~i~~~---~~~~~~~~~---~i~~~~~-spdg~~la~~~ 411 (814)
T 3mkq_A 344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-----DGEYVIYTA---LAWRNKAFG---KCQDFVW-GPDSNSYALID 411 (814)
T ss_dssp CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-----TTEEEEEET---TTTEEEEEE---ECSEEEE-CTTSSCEEEEC
T ss_pred CCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-----CCEEEEEEC---CCCCCCCCC---CEEEEEE-ECCCCEEEEEE
T ss_conf 20146511788765774068999999899942-----988999987---454456799---5479999-47998599996
Q ss_pred CCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 89974999973871124321026875457886665655545774333333431521047765168862498699985033
Q 000425 470 DDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQ 549 (1525)
Q Consensus 470 ~~~~~i~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl~~~l~~~~~~~~i~l~~~~~ 549 (1525)
.++ .|++|+.+ .+.... +. .+.+..+++|+ +.|+.++..+.|.+
T Consensus 412 ~~g-~v~l~~~~--------~~~~~~-------------v~-----~~~~s~dg~~~----~~l~~~~~d~~v~~----- 455 (814)
T 3mkq_A 412 ETG-QIKYYKNF--------KEVTSW-------------SV-----PMHSAIDRLFS----GALLGVKSDGFVYF----- 455 (814)
T ss_dssp TTC-CEEEEETT--------EECTTC-------------CC-----CCSSCCCEEEC----SSSEEEEETTEEEE-----
T ss_pred CCC-CEEEEECC--------CCCCCE-------------EE-----CCCCCCCCEEC----CEEEEEECCCEEEE-----
T ss_conf 898-39999777--------775243-------------97-----37867552365----46999966998999-----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEE------EEEEEEEECCCHHHH----HCCCCCCC
Q ss_conf 34433345642223556613369403422889997136775089999------420299980424666----40455568
Q 000425 550 GYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVL------TTQRVLIVSADLDIL----ASSSTKFD 619 (1525)
Q Consensus 550 ~yd~~~~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~------t~~~i~i~~~~l~~l----~~~~~~~~ 619 (1525)
||+.++. ..+.+..... .|.|+.+ |..+++. ++++++++.++.+.. ......++
T Consensus 456 -~d~~~~~---------~~~~~~~~~~----~v~~s~d--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (814)
T 3mkq_A 456 -FDWDNGT---------LVRRIDVNAK----DVIWSDN--GELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDS 519 (814)
T ss_dssp -ECTTTCC---------EEEEESSCEE----EEEECTT--SSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTT
T ss_pred -EECCCCC---------EEEEEECCCC----EEEECCC--CCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCC
T ss_conf -9987695---------9999735888----7999699--9999999867666774289999546886666641687621
Q ss_pred C-----------CCCCCEEEEEECCEEEEECC-CCCEEEEECCCEEEEEEECCCCEEEEEEEC--CCEEEECCCCCCCCC
Q ss_conf 8-----------99861146551587999724-441789407933159981389559999705--838991379889345
Q 000425 620 K-----------GLPSFRSLLWVGPALLFSTA-TAISVLGWDGKVRNILSISMPNAVLVGALN--DRLLLANPTEINPRQ 685 (1525)
Q Consensus 620 ~-----------~~~~IkSg~Wvg~~fIYtT~-t~l~Yl~~~G~~~~I~~l~~~~~yLlgyl~--~Ri~l~~~~~~~p~~ 685 (1525)
+ ..++|+|+.|++++|||+|. ++++|++ +++.+++.+++. ++|++||.+ +|++++
T Consensus 520 ~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~--------- 588 (814)
T 3mkq_A 520 EGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFV-GGKTYNLAHYTK-EMYLLGYLARDNKVYLA--------- 588 (814)
T ss_dssp TBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEE-TTEEEEEEECSS-CCEEEEEEGGGTEEEEE---------
T ss_pred CCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEEEE-CCEEEEEEECCC-CEEEEEEEECCCEEEEE---------
T ss_conf 2502221364576427876598088899976887089996-986689999896-67999998329999999---------
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC-----HHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 7860697101110245777433456777886538999999982-04778889-----55789998199984000112012
Q 000425 686 KKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITS-RFDSLRIT-----PRSLDILAKGPPVCGDLAVSLSQ 759 (1525)
Q Consensus 686 dk~~~I~s~~l~llE~ll~g~a~~~~~~~~t~~l~~~l~~~~~-~~~s~~i~-----~~~l~~L~~~~~~~~elAl~ls~ 759 (1525)
+++.++..+.+..-++ . |+ ++.+++++..+.. .++. +. +....+|.+ .|++|.|+++++
T Consensus 589 d~~~~~~~~~l~~~~~-~---------~~-~~~~~~~~~~a~~~~l~~--i~~~~~~~~~~~~l~~--~~~~~~a~~~~~ 653 (814)
T 3mkq_A 589 DREVHVYGYEISLEVL-E---------FQ-TLTLRGEIEEAIENVLPN--VEGKDSLTKIARFLEG--QEYYEEALNISP 653 (814)
T ss_dssp CTTCCEEEEECCHHHH-H---------HH-HHHHTTCHHHHHHHTGGG--CCCHHHHHHHHHHHHH--TTCHHHHHHHCC
T ss_pred CCCCCEEEEEECCHHH-H---------HH-HHHHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHH--CCCHHHHEECCC
T ss_conf 2888879999890999-9---------96-998707999999888742--8846789999999986--898689605278
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 58877810245687642998899998898610158999999982678979999999998199579999999972055789
Q 000425 760 AGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESIL 839 (1525)
Q Consensus 760 ~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~d~~~Ll 839 (1525)
|+.+||++|+++|+++.|+++++... ....|++||++||.+|++++|++||++++|+++|.
T Consensus 654 -----~~~~~f~~~l~~~~~~~A~~~~~~~~--------------~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~ 714 (814)
T 3mkq_A 654 -----DQDQKFELALKVGQLTLARDLLTDES--------------AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLF 714 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHTTCC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred -----CCCHHEEHHHHCCCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
T ss_conf -----93142502145099999999998617--------------67689999999998499899999998702713558
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCHHHHH---------HHHHHHHHCCCCCCCCHHHHHHCCCC--CCCC-CCCC
Q ss_conf 999770899999999999998059904899---------99999766067862002343200124--9999-9878
Q 000425 840 DLFICHLNPSAMRRLAQRLEEEGANPELRR---------YCERILRVRSTGWTQGIFANFAAESM--VPKG-PEWG 903 (1525)
Q Consensus 840 lLy~~~gd~e~L~kLa~~ae~~g~~~~~~~---------~c~~il~~~~~~~~~~~~a~~~a~s~--~~~~-~e~~ 903 (1525)
+||.++||.+++.+|+++|+.+|....+.. .|++++...++-.++..+|..+.+.. ++.- -+|+
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~ 790 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWK 790 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9987729999999999999985866799999988099999999999869947899999870997578899999999
No 4
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=223.46 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=128.3
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 11201258877810245687642998899998898610158999999982678979999999998199579999999972
Q 000425 754 AVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIA 833 (1525)
Q Consensus 754 Al~ls~~~~~~d~~~rF~LAl~lg~l~~A~~ia~~~~~~~~d~~~~~~~~~~~~rwk~Lg~~AL~~G~~~lAeec~q~~~ 833 (1525)
||++++ |+++||+|||++|||+.|+++|++.+ ..++||+||++||++||+++||+||++++
T Consensus 1 AL~~~~-----D~~~rF~LAL~lg~l~~A~e~a~~l~--------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 1 ALQFVQ-----DPHIRFDLALEYGNLDAALDEAKKLN--------------DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CCTTSS-----CHHHHHHHHHHTTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCCCC-----CHHHHHHHHHHCCCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 966567-----83889999995599999999999808--------------89999999999999599699999999848
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 055789999770899999999999998059904899----------9999976606786200234320012499999878
Q 000425 834 DYESILDLFICHLNPSAMRRLAQRLEEEGANPELRR----------YCERILRVRSTGWTQGIFANFAAESMVPKGPEWG 903 (1525)
Q Consensus 834 d~~~LllLy~~~gd~e~L~kLa~~ae~~g~~~~~~~----------~c~~il~~~~~~~~~~~~a~~~a~s~~~~~~e~~ 903 (1525)
||++|+|||+++||.++|++|+++|+.+| +++++| .|..+|...++-.++.+||.+|.++ |.+
T Consensus 62 D~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~------~~a 134 (177)
T 3mkq_B 62 SFDKLSFLYLVTGDVNKLSKMQNIAQTRE-DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE------AAA 134 (177)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH------HHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH------HHH
T ss_conf 89989999998488999999999999776-57799999998499999999999779848999999984968------999
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECCCCEEEECCCCCCC
Q ss_conf 996124247988993201001334455457999-998200123101103546631
Q 000425 904 GGNWEIKTPTNLKSIPQWELATEVVPYMRTDDG-PIPSIISDHVGIYLGSIKGRG 957 (1525)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ylg~~~~~~ 957 (1525)
.+|++..+. ++++. ++|-+..+.. +||+++.... ++||.+.
T Consensus 135 ---~~~~~~~~~-~~~~~-----~~p~~~~~~~~~p~~~~~~~~----~nwp~~~ 176 (177)
T 3mkq_B 135 ---SAFLEQAEV-DEQDV-----TLPDQMDASNFVQRPVISKPL----EKWPLKE 176 (177)
T ss_dssp ---HHHHHHTTC-CGGGC-----CCCSCCCCSCCSCCCCCSSCC----SSCCBCC
T ss_pred ---HHHHHHHCC-CCCCC-----CCCCCCCCCCCCCCCCCCCCC----CCCCCCC
T ss_conf ---999998377-65545-----688767755689899877777----8998787
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=215.60 Aligned_cols=530 Identities=10% Similarity=0.065 Sum_probs=293.9
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 79689999707999799998416349999964188466698068999969999928999899998898299998699919
Q 000425 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~~~~la~hP~~p~Vl~s~~~~~sV~v~~tiegg~~~t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~t~~~ 85 (1525)
.+....++|+|.+.+++++. .+.++.+|+. +.+.....+.+ |.+.|.+++|+|++.++++++.|+.|++||+.++++
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~-~d~~i~vw~~-~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCG-ADKTLQVFKA-ETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEET-TTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEE-CCCEEEEEEC-CCCCEEEEECC-CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 66489999879999899994-8894999998-99978887606-777789999926999899981899599987799936
Q ss_pred EEEEE-CCCCEEECCCEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99995-27853665730099908--9989999958990999968889850157501257684899990899999999789
Q 000425 86 HYTLQ-LDNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 162 (1525)
Q Consensus 86 l~tL~-H~~~V~~~~a~sVaFsP--dg~~LvSgS~DgtIrVWDl~t~~~s~i~~l~gH~~~V~sIafsPdg~lLvSgS~D 162 (1525)
+.++. |...|. +++|+| ++.++++++.|++|++||+.+ ......+.+|...|++++|+|++.++++++.|
T Consensus 692 ~~~~~~~~~~v~-----~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 692 VHTYDEHSEQVN-----CCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp EEEEECCSSCEE-----EEEECSSSSCCEEEEEETTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred EEEECCCCCCEE-----EEEEECCCCCEEEEEEECCCEEEEEECCC--CCHHHEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 899958997379-----99984089965999980897099998999--63422012777978899992599989999789
Q ss_pred CCEEEEEEEEEC-----C-CC------------CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEE-----CCCCEE
Q ss_conf 971588711112-----8-99------------9997532125787311243----4400135885111-----289906
Q 000425 163 GSLQVWKTRVII-----N-PN------------RPPMQANFFEPASIESIDI----PRILSQQGGEAVY-----PLPRVR 215 (1525)
Q Consensus 163 gtIkIWDir~~~-----~-p~------------~~~~~a~~f~p~gVesidi----~~iLs~~gG~~vy-----~l~~V~ 215 (1525)
++|++||++... . .. ...+.+..|.+++-..+.. -.+.....+.... ....+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEE
T ss_conf 85999968888655302023210246776445650179999978998899975895999995689723577478777607
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99991589728998304556876433300003474254410023347851001100124788542003588998875211
Q 000425 216 ALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHL 295 (1525)
Q Consensus 216 ~v~~HP~~Nliai~F~~~s~~Dd~k~k~~~~~eg~~q~~~tlq~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~ 295 (1525)
.+.|+|..+.++ +++.+..++.|...++ ....++++|.+.+.++ .+.+.+.. ++..
T Consensus 845 ~~~~sp~~~~l~------~~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v---~~spdg~~-l~s~------------ 900 (1249)
T 3sfz_A 845 YCDFSPYDHLAV------IALSQYCVELWNIDSR--LKVADCRGHLSWVHGV---MFSPDGSS-FLTA------------ 900 (1249)
T ss_dssp EEEECSSTTEEE------EECSSSCEEEEETTTT--EEEEEECCCSSCEEEE---EECTTSSE-EEEE------------
T ss_pred EEEECCCCCEEE------EEECCCEEEEEECCCC--CEEEECCCCCCCEEEE---EECCCCCE-EEEE------------
T ss_conf 999827888899------9947986999986789--5653227876656899---99899998-9999------------
Q ss_pred CCCCCEEEEHHHHHCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC--EE
Q ss_conf 5897236002532100000011566545765567621330565333777633466533332333564---222452--23
Q 000425 296 KGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENR---VLHYPV--RA 370 (1525)
Q Consensus 296 ~~~~~~~I~di~k~~~i~s~~~d~~~k~~~~~~~p~~~i~~~~~~~~~~~vv~~~~~e~~~f~~~~~---v~~~~~--~~ 370 (1525)
..++.+.+|++................. ....+...+..... .....+. ........+..+.. +...+. .+
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDV--VFQENETMVLAVDN-IRGLQLI-AGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEE--EEETTEEEEEEEES-SSSEEEE-EESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred ECCCEEEEEECCCCCEEEEECCCCEEEE--EECCCCCEEEEECC-CCCEEEE-ECCCCEEEECCCCCEEEEEECCCCCEE
T ss_conf 5897289887466520102113310368--97599868998137-7624898-447650897256727899995899779
Q ss_pred EEE-ECCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 687-0833788644788632201232136997122162024368751899996216885119999832411013467988
Q 000425 371 FYV-DGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSST 449 (1525)
Q Consensus 371 ~y~-~~~~i~~~~l~~g~~~~~~~L~~~~~G~~e~~pq~l~~spngr~v~V~g~~~~~~~E~iiYt~~~~l~~rnk~G~~ 449 (1525)
... .+..|..+++.++... .. ..+. .-....+.++|+|++++.++. ++.+.+|-..+.. .....+..
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~--~~----~~~h-~~~v~~l~~s~dg~~l~s~~~----dg~i~vwd~~~~~-~~~~~~~~ 1044 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVF--SS----GVGH-KKAVRHIQFTADGKTLISSSE----DSVIQVWNWQTGD-YVFLQAHQ 1044 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCE--EE----CCCC-SSCCCCEEECSSSSCEEEECS----SSBEEEEETTTTE-EECCBCCS
T ss_pred EEECCCCCEEEEECCCCCEE--EE----CCCC-CCCEEEEEECCCCCEEEEECC----CCEEEEEECCCCC-EEEEECCC
T ss_conf 99869998899975787234--43----0367-771689999899998999869----9879999879996-68985278
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 65560698379999189994899749999738711243210268754578866656555457743333334315210477
Q 000425 450 VKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPI 529 (1525)
Q Consensus 450 ~~g~~~~fig~~~n~yAvle~~~~~i~I~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~If~~pl 529 (1525)
-.-.+++|. ++ +.++.-..+ ..|++++....... ..+.+. ...+..+-+.|-
T Consensus 1045 ~~v~~~~~~-~~-~~l~~~~~d-g~v~vwd~~~~~~~--------------------~~~~~~-----~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1045 ETVKDFRLL-QD-SRLLSWSFD-GTVKVWNVITGRIE--------------------RDFTCH-----QGTVLSCAISSD 1096 (1249)
T ss_dssp SCEEEEEEC-SS-SEEEEEESS-SEEEEEETTTTCCC--------------------EEEECC-----SSCCCCEEECSS
T ss_pred CCEEEEEEC-CC-CCEEEEECC-CCEEEEECCCCCEE--------------------EEECCC-----CCCEEEEEECCC
T ss_conf 738999990-89-958999788-96899888988655--------------------887466-----884899999899
Q ss_pred CCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEE-EEEEECCCH
Q ss_conf 6516886249869998503334433345642223556613369403422889997136775089999420-299980424
Q 000425 530 ESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ-RVLIVSADL 608 (1525)
Q Consensus 530 ~~~l~~~~~~~~i~l~~~~~~yd~~~~~~~~i~~~~e~~r~i~~~~~e~v~~V~Ws~~~~g~~vaI~t~~-~i~i~~~~l 608 (1525)
+..++.++.++.|.+ ||..+.... +.+. .+...|..+.|+.+ |.+++..+.+ .|.+.+..-
T Consensus 1097 ~~~l~s~s~d~~v~i------wd~~~~~~~---------~~l~-~h~~~v~~~~~s~d--g~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKI------WSFDLLSPL---------HELK-GHNGCVRCSAFSLD--GILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp SSSCEEECCSSCCCE------ECSSSSSCS---------BCCC-CCSSCEEEEEECSS--SSEEEEEETTSCCCEEESSS
T ss_pred CCEEEEECCCCCEEE------EECCCCCEE---------EEEC-CCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCC
T ss_conf 998999849994899------878985001---------2550-68776799999799--99899982899799998899
Q ss_pred H-HHHCCCC-----CCCCCCCCCEEEEEE
Q ss_conf 6-6640455-----568899861146551
Q 000425 609 D-ILASSST-----KFDKGLPSFRSLLWV 631 (1525)
Q Consensus 609 ~-~l~~~~~-----~~~~~~~~IkSg~Wv 631 (1525)
. .+..... ........|.+..|-
T Consensus 1159 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A 1159 GQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp SCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEEEC
T ss_conf 94578851444442102567428999997
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=205.23 Aligned_cols=180 Identities=17% Similarity=0.235 Sum_probs=147.7
Q ss_pred CEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCE
Q ss_conf 669806899996999992899989999889829999869991999995-2785366573009990899899999589909
Q 000425 43 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTL 121 (1525)
Q Consensus 43 ~t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~t~~~l~tL~-H~~~V~~~~a~sVaFsPdg~~LvSgS~DgtI 121 (1525)
...+.+ |.++|++++|+|+++++++|+.|++|++||+.++++..++. |...|. +++|+|++.++++|+.|++|
T Consensus 101 ~~~l~g-h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-----~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 101 KYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-----DISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEEC-CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-----EEEECTTSSEEEEEETTSCC
T ss_pred EEEECC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEECCCCCEEEEEECCCEE
T ss_conf 076616-677689999969999899993898599998999937788816678687-----89985999999999189819
Q ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99968889850157501257684899990899999999789971588711112899999753212578731124344001
Q 000425 122 LAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILS 201 (1525)
Q Consensus 122 rVWDl~t~~~s~i~~l~gH~~~V~sIafsPdg~lLvSgS~DgtIkIWDir~~~~p~~~~~~a~~f~p~gVesidi~~iLs 201 (1525)
++||+.+ ..++..+.+|...|.+++|+|++.++++++.|++|++||++.... . ..+.
T Consensus 175 ~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~------~---------------~~~~ 231 (410)
T 1vyh_C 175 KLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------V---------------KTFT 231 (410)
T ss_dssp CEEETTS--SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------E---------------EEEE
T ss_pred EEEECCC--CCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE------E---------------EEEE
T ss_conf 9995899--826699828999778999967999999996899699998999948------9---------------9992
Q ss_pred CCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 35885111289906999915897289983045568764333000034742544100233478510
Q 000425 202 QQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 202 ~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~k~k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
.+. ..|..+.++|..++++ +++.|..++.|..+.+. +..++++|...+.+
T Consensus 232 ~h~-------~~v~~~~~~~~g~~l~------s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 232 GHR-------EWVRMVRPNQDGTLIA------SCSNDQTVRVWVVATKE--CKAELREHRHVVEC 281 (410)
T ss_dssp CCS-------SCEEEEEECTTSSEEE------EEETTSCEEEEETTTCC--EEEEECCCSSCEEE
T ss_pred CCC-------CCEEEEEECCCCCEEE------EECCCCEEEEEECCCCC--EEEEECCCCCEEEE
T ss_conf 788-------6289999989999999------99189909999898974--36673378745899
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=203.83 Aligned_cols=217 Identities=18% Similarity=0.198 Sum_probs=173.2
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 79689999707999799998416349999964188466698068999969999928999899998898299998699919
Q 000425 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 85 (1525)
Q Consensus 6 ~~~~~~la~hP~~p~Vl~s~~~~~sV~v~~tiegg~~~t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~t~~~ 85 (1525)
.+....++|||.+++++++. .+.++++|+. +.+.....+.. |..+|++++|+|++.++++|+.|++|++||+.++++
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~-~dg~v~lWd~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTL-YSGRVELWNY-ETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEE-TTSEEEEEET-TTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEC-CCCCEEEEEC-CCCCEEEEEEC-CCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 88568999899998799982-7996999878-88826677605-677488999968999899988999799999999967
Q ss_pred EEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC-CCCEEEEEECCC
Q ss_conf 99995-2785366573009990899899999589909999688898501575012576848999908-999999997899
Q 000425 86 HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDG 163 (1525)
Q Consensus 86 l~tL~-H~~~V~~~~a~sVaFsPdg~~LvSgS~DgtIrVWDl~t~~~s~i~~l~gH~~~V~sIafsP-dg~lLvSgS~Dg 163 (1525)
+..+. |...|+ +++|+|+++++++++.|++|++||+++. ..+...+.+|...|.+++|+| ++.+|++++.|+
T Consensus 90 ~~~~~~h~~~v~-----~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 90 VVDFEAHPDYIR-----SIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp EEEEECCSSCEE-----EEEECSSSSEEEEEETTSCEEEEEGGGT-TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEEECCCCCEE-----EEEECCCCCEEEEECCCCEEEEEECCCC-CCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf 899807998089-----9999599999999879981999989999-2231010566895799998889999899991898
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEC--CCCEEEEEECCCCCCCCCCC
Q ss_conf 7158871111289999975321257873112434400135885111289906999915--89728998304556876433
Q 000425 164 SLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHP--RLNLAVLLFANFTGGDNIKN 241 (1525)
Q Consensus 164 tIkIWDir~~~~p~~~~~~a~~f~p~gVesidi~~iLs~~gG~~vy~l~~V~~v~~HP--~~Nliai~F~~~s~~Dd~k~ 241 (1525)
+|++||++.... . + .+... ....+..+.|+| ..++++ ++++|..+
T Consensus 164 ~v~iwd~~~~~~-----~---~-------------~~~~~------~~~~v~~~~~~~~~~~~~l~------s~s~D~~i 210 (304)
T 2ynn_A 164 TVKVWSLGQSTP-----N---F-------------TLTTG------QERGVNYVDYYPLPDKPYMI------TASDDLTI 210 (304)
T ss_dssp EEEEEETTCSSC-----S---E-------------EEECC------CTTCEEEEEECCSTTCCEEE------EEETTSEE
T ss_pred EEEEEECCCCCC-----C---C-------------EECCC------CCCCEEEEEEEECCCCCEEE------EECCCCEE
T ss_conf 399998999976-----6---3-------------32168------74757789999869999999------98699919
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 3000034742544100233478510
Q 000425 242 RAAYTREGRKQLFAVLQSARGSSAS 266 (1525)
Q Consensus 242 k~~~~~eg~~q~~~tlq~~~~~~~s 266 (1525)
+.|..+++ ++..++++|.+.+.+
T Consensus 211 ~iWd~~~~--~~~~~~~~h~~~v~~ 233 (304)
T 2ynn_A 211 KIWDYQTK--SCVATLEGHMSNVSF 233 (304)
T ss_dssp EEEETTTT--EEEEEEECCSSCEEE
T ss_pred EEEECCCC--CCCEEECCCCCCEEE
T ss_conf 99967898--602464798888899
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=203.39 Aligned_cols=245 Identities=14% Similarity=0.144 Sum_probs=178.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-
Q ss_conf 5796899997079997999984163499999641884666980689999699999289998999988982999986999-
Q 000425 5 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY- 83 (1525)
Q Consensus 5 ~~~~~~~la~hP~~p~Vl~s~~~~~sV~v~~tiegg~~~t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~t~- 83 (1525)
..+.-..++|+|.+..+.++. ..++.+|+. +.+.....+.+ |.+.|++++|+|++.++++|+.|++|++||+.+.
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~--~~~v~l~~~-~~~~~~~~~~~-h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCN--GTSVYTVPV-GSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEE--TTEEEEEET-TCSSCCEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCCCEEEEEECCCCCEEEECC--CCEEEEECC-CCCCCCEEECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 068236976679999799679--997999457-87242737658-99865999999999689999489978994898984
Q ss_pred -CEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECC----CCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCC-EE
Q ss_conf -1999995-2785366573009990899899999589----909999688898501575012576848999908999-99
Q 000425 84 -AVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRR----GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LL 156 (1525)
Q Consensus 84 -~~l~tL~-H~~~V~~~~a~sVaFsPdg~~LvSgS~D----gtIrVWDl~t~~~s~i~~l~gH~~~V~sIafsPdg~-lL 156 (1525)
....++. |...|. +++|+|++..+++++.+ +.|++||.... ...+.+|...|++++|+|+++ .|
T Consensus 93 ~~~~~~~~~~~~~v~-----~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~----~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 93 HILKTTIPVFSGPVK-----DISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp CCEEEEEECSSSCEE-----EEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEE
T ss_pred CEEEEEECCCCCCEE-----EEEECCCCCEEEEEECCCCCEEEEEEEECCCC----CCEECCCCCCCEEEEECCCCCEEE
T ss_conf 156676225578448-----99989999979999899773669999638997----632547889836999889998299
Q ss_pred EEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 99978997158871111289999975321257873112434400135885111289906999915897289983045568
Q 000425 157 VTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGG 236 (1525)
Q Consensus 157 vSgS~DgtIkIWDir~~~~p~~~~~~a~~f~p~gVesidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~ 236 (1525)
++++.|++|++||.+.... ...+..+. ..|+++.|+|...+++ +++
T Consensus 164 ~s~s~D~~v~lwd~~~~~~---------------------~~~l~~H~-------~~V~~v~fspdg~~la------s~s 209 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKF---------------------KSTFGEHT-------KFVHSVRYNPDGSLFA------STG 209 (611)
T ss_dssp EEEETTSCEEEEETTTBEE---------------------EEEECCCS-------SCEEEEEECTTSSEEE------EEE
T ss_pred EEEECCCEEEEEECCCCEE---------------------EEEECCCC-------CCEEEEEECCCCCEEE------EEE
T ss_conf 9992898099997999757---------------------66520025-------7169999979999899------998
Q ss_pred CCCCCCCCCCCCCCEEEEEEEC-------CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHH
Q ss_conf 7643330000347425441002-------334785100110012478854200358899887521158972360025321
Q 000425 237 DNIKNRAAYTREGRKQLFAVLQ-------SARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARK 309 (1525)
Q Consensus 237 Dd~k~k~~~~~eg~~q~~~tlq-------~~~~~~~s~~~e~~~slgs~g~l~~~ql~~~~~~~~~~~~~~~~I~di~k~ 309 (1525)
.|..++.|...++.. ..++. +|.+.+.+ ..+++.+.. ++.. ..|+.+++||+...
T Consensus 210 ~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~---v~~spdg~~-l~s~------------s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFG---LTWSPDGTK-IASA------------SADKTIKIWNVATL 271 (611)
T ss_dssp TTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEE---EEECTTSSE-EEEE------------ETTSEEEEEETTTT
T ss_pred CCCCEEEEECCCCCE--EEEECCCCCCCCCCCCCEEE---EEECCCCCE-EEEE------------ECCCEEEEEECCCC
T ss_conf 999199988999828--66513664323566787899---999799999-9999------------08980999968887
Q ss_pred CEEEE
Q ss_conf 00000
Q 000425 310 AFLYS 314 (1525)
Q Consensus 310 ~~i~s 314 (1525)
..+.+
T Consensus 272 ~~~~~ 276 (611)
T 1nr0_A 272 KVEKT 276 (611)
T ss_dssp EEEEE
T ss_pred CEEEE
T ss_conf 01344
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=200.53 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=134.1
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf 69806899996999992899989999889829999869991999995-27853665730099908998999995899099
Q 000425 44 TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 122 (1525)
Q Consensus 44 t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~t~~~l~tL~-H~~~V~~~~a~sVaFsPdg~~LvSgS~DgtIr 122 (1525)
..+.+ |.+.|.+++|+|+++++++|+.|++|++||..++.++.++. |...|. +++|+|++.++++++.|++|+
T Consensus 609 ~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-----~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 609 LVVRP-HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-----CCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp EEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSEEE
T ss_pred EEEEC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEE-----EEEEECCCCEEEEEECCCEEE
T ss_conf 78716-666489999879999899994889499999899978887606777789-----999926999899981899599
Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99688898501575012576848999908--9999999978997158871111289999975321257873112434400
Q 000425 123 AWDVSIERPSMIGIIQVGSQPITSVAWLP--MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRIL 200 (1525)
Q Consensus 123 VWDl~t~~~s~i~~l~gH~~~V~sIafsP--dg~lLvSgS~DgtIkIWDir~~~~p~~~~~~a~~f~p~gVesidi~~iL 200 (1525)
+||+.+ ......+.+|...|.++.|+| +..++++++.|++|++||++.... . ..+
T Consensus 683 vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~------~---------------~~~ 739 (1249)
T 3sfz_A 683 IWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC------R---------------NTM 739 (1249)
T ss_dssp EEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE------E---------------EEE
T ss_pred EEECCC--CCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH------H---------------HEE
T ss_conf 987799--93689995899737999984089965999980897099998999634------2---------------201
Q ss_pred CCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 13588511128990699991589728998304556876433300003474
Q 000425 201 SQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGR 250 (1525)
Q Consensus 201 s~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~Dd~k~k~~~~~eg~ 250 (1525)
..+. ..|+++.|+|..+.++ +++.|..++.|..+.+.
T Consensus 740 ~~h~-------~~v~~~~~sp~~~~l~------s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 740 FGHT-------NSVNHCRFSPDDELLA------SCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp CCCS-------SCEEEEEECSSTTEEE------EEESSSEEEEEEGGGTE
T ss_pred CCCC-------CCEEEEEEECCCCEEE------EEECCCEEEEEECCCCC
T ss_conf 2777-------9788999925999899------99789859999688886
No 10
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=193.95 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=131.6
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEEEECCCC----CCEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 796899997079997999984163499999641884----6669806899996999992899989999889829999869
Q 000425 6 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR----APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 81 (1525)
Q Consensus 6 ~~~~~~la~hP~~p~Vl~s~~~~~sV~v~~tiegg~----~~t~ik~~H~~~V~sIafsP~g~~LaSGs~DgtIkIWDl~ 81 (1525)
.+....++++|..+-++++...|.+|++|+...... ....+.+ |.+.|++++|+|++.++++|+.|++|++||+.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 74069998669988889998089948999756887555533324258-88847999997999999998089928999799
Q ss_pred CCCEEEEEE-CCCCEEECCCEEEEEECCCCEEEEEECCCCEEEEECCCCCC-EEEEEECCCCCCEEEEEECCCC--CEEE
Q ss_conf 991999995-27853665730099908998999995899099996888985-0157501257684899990899--9999
Q 000425 82 TYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SMIGIIQVGSQPITSVAWLPML--RLLV 157 (1525)
Q Consensus 82 t~~~l~tL~-H~~~V~~~~a~sVaFsPdg~~LvSgS~DgtIrVWDl~t~~~-s~i~~l~gH~~~V~sIafsPdg--~lLv 157 (1525)
+..+...+. |...|. +++|+|++.++++++.|++|++||...... .......+|...|.+++|+|++ ..++
T Consensus 461 ~~~~~~~~~~h~~~v~-----~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVL-----SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp TTEEEEEEECCSSCEE-----EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred CCCCEEEEECCCCCEE-----EEEEECCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECCCCCCEEE
T ss_conf 9951368867999889-----99990899989999488979999789985404303778887867999991798865599
Q ss_pred EEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 99789971588711112899999753212578731124344001358851112899069999158972899830455687
Q 000425 158 TLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGD 237 (1525)
Q Consensus 158 SgS~DgtIkIWDir~~~~p~~~~~~a~~f~p~gVesidi~~iLs~~gG~~vy~l~~V~~v~~HP~~Nliai~F~~~s~~D 237 (1525)
+++.|++|++||++.... ...+..+. ..|+++.|+|..++++ +++.
T Consensus 536 s~s~d~~v~vwd~~~~~~---------------------~~~~~~h~-------~~v~~v~~spdg~~l~------sg~~ 581 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCKL---------------------RSTLAGHT-------GYVSTVAVSPDGSLCA------SGGK 581 (694)
T ss_dssp EEETTSCEEEEETTTCCE---------------------EEEECCCS-------SCEEEEEECTTSSEEE------EEET
T ss_pred EEECCCEEEEEECCCCCE---------------------EEEECCCC-------CCEEEEEEECCCCEEE------EEEC
T ss_conf 996898599998999927---------------------89986788-------8888999918989899------9958
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 6433300003474
Q 000425 238 NIKNRAAYTREGR 250 (1525)
Q Consensus 238 d~k~k~~~~~eg~ 250 (1525)
|..++.|..++++
T Consensus 582 Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 582 DGVVLLWDLAEGK 594 (694)
T ss_dssp TSBCEEEETTTTE
T ss_pred CCEEEEEECCCCC
T ss_conf 9949999889995
Done!