BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000426
(1525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust.
Identities = 400/1087 (36%), Positives = 567/1087 (52%), Gaps = 108/1087 (9%)
Query: 12 SHVWVEDPEEAWIDGQVLK---ITGKDVEVQTTKGKKVVANLSKIYPKDMEEPA------ 62
+ VW+ DPEE W ++LK K ++++ +GK + L PK E P
Sbjct: 11 ARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLD---PKTKELPPLRNPDI 67
Query: 63 -GGVDDMTKLSYLHEPGVLRNLKTRY-ELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQ 120
G +D+T LSYLHEP VL NLK R+ + IYTY G +L+AINP+++LP IY ++
Sbjct: 68 LVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINA 126
Query: 121 YKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR 180
Y G G++ PH+FAVA+ AY+ M + ++ SI+VSGESGAGKT + K MRY A + G
Sbjct: 127 YSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSG- 185
Query: 181 TATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLL 240
+A+E VE++VL SNP++E+ GNAKT RN+NSSRFGK++EI FDK+ RI GA +RTYLL
Sbjct: 186 SASEA-NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLL 244
Query: 241 ERSRVCQISSPERNYHCFYLLC-NAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
E+SRV + ERNYH FY LC +A E + +LGN FHY Q + G+ DA +
Sbjct: 245 EKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKE 304
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAA 359
+ TR+A ++GIS+ Q IFR++A ILH+GN+EF+ +IP L
Sbjct: 305 MVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDP---LTIFC 361
Query: 360 ELLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINS 419
+L+ D + LC R + T E + + A+ +RD LAK IY+ LF+W+VD +N
Sbjct: 362 DLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNK 421
Query: 420 SIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC---------AHVFKMEQEEYT 470
++ S IGVLDIYGFE+F+ NS F I+ HVFK+EQEEY
Sbjct: 422 ALHSTVKQHSFIGVLDIYGFETFEINS---FEQFCINYANEKLQQQFNMHVFKLEQEEYM 478
Query: 471 KEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQT-FKSHKR 529
KE+I W+ I+F DNQ ++LIE K G++ LLDE C PK + +T+A KLY T
Sbjct: 479 KEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCAL 537
Query: 530 FVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLL-SASNCPFVAGLF---- 584
F KP+ S F I H+A +V YQ + FL+KNKD V E +L S+ + LF
Sbjct: 538 FEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 597
Query: 585 -------------------PPLPEETXXXXXXXXXXXXXXLQ----LQQLMDTLNSTEPH 621
P P + Q L LM+TLN+T PH
Sbjct: 598 KAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPH 657
Query: 622 YIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPE 681
Y+RC+KPN+ P F+ +QQLR GVLE IRIS AG+P+R + EF +R+ +L +
Sbjct: 658 YVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQ 717
Query: 682 FLEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARRAEILSSAAKTXXX 739
+ D K CK +LEK L +Q GKTKIF RAGQ+A L+ RA+ L +A
Sbjct: 718 -KDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQK 776
Query: 740 XXXXXXXXXXXXALREATIVLQSLCRGRLACRVFDSMKKEAAAVKIQKHIRRYDARTAYK 799
+R A I +Q RG A +++ AA+ IQK R Y R Y+
Sbjct: 777 TIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQ 836
Query: 800 RLHVSTLVLQTGLRTMAARKEFRFRKQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQTR 859
+ +T+ LQ LR R +++ + +IIIQ R A +Y R + + Q
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896
Query: 860 WRGRIARRELRKLKMAARETGALKEAKDKLQKTVEDLTWRIQ---------LEK------ 904
+R +A+REL+KLK+ AR K+ L+ + L +I LEK
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956
Query: 905 -------RLRTDLE-----EAKAQEVTKLQNSLQEMQAKLDEANASLVXXXXXXXXXXXX 952
+LR+D+E E +A+ T SLQE AKL +
Sbjct: 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK-------------ELHQT 1003
Query: 953 XXXXXXXXXXXXXXXXXIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKL 1012
E L +E++ T L++EK+ + R +A+E +E +KKL
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN--RRIHDQAKEITETMEKKL 1061
Query: 1013 DETEKKV 1019
E K++
Sbjct: 1062 VEETKQL 1068
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust.
Identities = 323/741 (43%), Positives = 467/741 (63%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDIYGFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 QERKA-YFIGVLDIYGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + F
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQF 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 582 bits (1499), Expect = e-166, Method: Compositional matrix adjust.
Identities = 322/741 (43%), Positives = 467/741 (63%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDIYGFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 QERKA-YFIGVLDIYGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 321/740 (43%), Positives = 466/740 (62%), Gaps = 41/740 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T+ G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 443 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + F+
Sbjct: 679 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFR 738
Query: 707 IGKTKIFLRAGQMAELDARR 726
G TKIF RAGQ+A ++ R
Sbjct: 739 FGITKIFFRAGQLARIEEAR 758
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 469/746 (62%), Gaps = 43/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 45 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 98
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 99 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 157
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 218 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 277
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 278 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 337
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 338 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 393
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 394 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 453
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 454 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 511
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 512 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 571
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 572 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 628
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 629 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 688
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 689 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 748
Query: 706 QIGKTKIFLRAGQMAELDARRAEILS 731
+ G TKIF RAGQ+A ++ R + +S
Sbjct: 749 RFGITKIFFRAGQLARIEEAREQRIS 774
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 580 bits (1494), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 469/746 (62%), Gaps = 43/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 45 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 98
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 99 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 157
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 218 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 277
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 278 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 337
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 338 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 393
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 394 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 453
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 454 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 511
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 512 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 571
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 572 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 628
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 629 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 688
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 689 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 748
Query: 706 QIGKTKIFLRAGQMAELDARRAEILS 731
+ G TKIF RAGQ+A ++ R + +S
Sbjct: 749 RFGITKIFFRAGQLARIEEAREQRIS 774
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 468/746 (62%), Gaps = 41/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 45 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 98
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 99 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 157
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 218 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 277
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 278 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 337
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 338 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 393
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 394 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 453
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 454 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 512
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 513 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 572
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 573 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 629
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 630 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 689
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 690 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 749
Query: 707 IGKTKIFLRAGQMAELDARRAEILSS 732
G TKIF RAGQ+A ++ R + L S
Sbjct: 750 FGITKIFFRAGQLARIEEAREQRLES 775
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 579 bits (1492), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 468/746 (62%), Gaps = 41/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 33 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 86
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 87 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 145
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 206 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 265
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 266 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 325
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 326 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 381
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 382 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 441
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 442 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 500
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 501 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 560
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 617
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 618 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 677
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 678 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 737
Query: 707 IGKTKIFLRAGQMAELDARRAEILSS 732
G TKIF RAGQ+A ++ R + L S
Sbjct: 738 FGITKIFFRAGQLARIEEAREQRLES 763
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 579 bits (1492), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 468/746 (62%), Gaps = 41/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 45 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 98
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 99 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 157
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 218 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 277
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 278 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 337
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 338 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 393
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 394 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 453
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 454 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 512
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 513 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 572
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 573 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 629
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 630 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 689
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 690 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 749
Query: 707 IGKTKIFLRAGQMAELDARRAEILSS 732
G TKIF RAGQ+A ++ R + L S
Sbjct: 750 FGITKIFFRAGQLARIEEAREQRLES 775
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 321/741 (43%), Positives = 466/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 320/740 (43%), Positives = 465/740 (62%), Gaps = 41/740 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 443 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 679 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 738
Query: 707 IGKTKIFLRAGQMAELDARR 726
G TKIF RAGQ+A ++ R
Sbjct: 739 FGITKIFFRAGQLARIEEAR 758
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 320/746 (42%), Positives = 465/746 (62%), Gaps = 41/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSS FGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 443 SERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 679 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 738
Query: 707 IGKTKIFLRAGQMAELDARRAEILSS 732
G TKIF RAGQ+A ++ R + L S
Sbjct: 739 FGITKIFFRAGQLARIEEAREQRLGS 764
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 321/741 (43%), Positives = 466/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
++ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 EERKA-YFIGVLDIEGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + F
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQF 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 321/741 (43%), Positives = 466/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 QERKA-YFIGVLDIEGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 321/741 (43%), Positives = 466/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust.
Identities = 319/740 (43%), Positives = 465/740 (62%), Gaps = 41/740 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNN+SRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 443 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 679 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 738
Query: 707 IGKTKIFLRAGQMAELDARR 726
G TKIF RAGQ+A ++ R
Sbjct: 739 FGITKIFFRAGQLARIEEAR 758
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 320/741 (43%), Positives = 465/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 33 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 86
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 87 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 145
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 206 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 265
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 266 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 325
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 326 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 381
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 382 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 441
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 442 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 616
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 617 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 676
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C VLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 677 CNAVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 736
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 737 RFGITKIFFRAGQLARIEEAR 757
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 320/740 (43%), Positives = 465/740 (62%), Gaps = 41/740 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T+ G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S+ ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD ++
Sbjct: 267 RVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 443 SERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFLTVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLEAIRI+ G+P R + +F+ R+ LAP D + A +L+ + + F+
Sbjct: 679 NGVLEAIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFR 738
Query: 707 IGKTKIFLRAGQMAELDARR 726
G TKIF RAGQ+A ++ R
Sbjct: 739 FGITKIFFRAGQLARIEEAR 758
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 320/741 (43%), Positives = 465/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 33 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 86
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 87 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 145
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 206 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 265
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 266 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 325
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 326 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 381
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 382 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 441
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 442 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 616
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 617 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 676
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C VLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 677 CNVVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 736
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 737 RFGITKIFFRAGQLARIEEAR 757
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 321/746 (43%), Positives = 467/746 (62%), Gaps = 41/746 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 33 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 86
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+ +P IY M+ +KG
Sbjct: 87 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIP-IYTQEMVDIFKGR 145
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 206 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 265
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 266 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 325
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 326 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 381
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 382 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKINNVLC 441
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
Q+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 442 QERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 500
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 501 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 560
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 617
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 618 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 677
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + ++
Sbjct: 678 NGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYR 737
Query: 707 IGKTKIFLRAGQMAELDARRAEILSS 732
G TKIF RAGQ+A ++ R + L S
Sbjct: 738 FGITKIFFRAGQLARIEEAREQRLES 763
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 320/741 (43%), Positives = 464/741 (62%), Gaps = 43/741 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 34 YIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD ++
Sbjct: 267 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 443 SE-RAAYFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKVEQEEYLKEKIN 500
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 501 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 560
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 561 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 617
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 618 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 677
Query: 648 CGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGF 705
C GVLE IRI+ G+P R + +F+ R+ LLAP D + A +L+ + + +
Sbjct: 678 CNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQY 737
Query: 706 QIGKTKIFLRAGQMAELDARR 726
+ G TKIF RAGQ+A ++ R
Sbjct: 738 RFGITKIFFRAGQLARIEEAR 758
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 319/740 (43%), Positives = 464/740 (62%), Gaps = 41/740 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T+ G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S+ ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD ++
Sbjct: 267 RVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEEEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
+ + IGVLDI GFE FK NS L + H+FK+EQEEY KE+I+W
Sbjct: 443 SERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LAP D + A +L+ + + F+
Sbjct: 679 NGVLEGIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFR 738
Query: 707 IGKTKIFLRAGQMAELDARR 726
G TKIF RAGQ+A ++ R
Sbjct: 739 FGITKIFFRAGQLARIEEAR 758
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 318/740 (42%), Positives = 464/740 (62%), Gaps = 41/740 (5%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T+ G KK AN D G
Sbjct: 34 YIWYNPDPKERDSYECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFD------G 87
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 88 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 146
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 207 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKS 266
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S+ ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD ++
Sbjct: 267 RVVFQSTSERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKI 326
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 327 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 382
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 383 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDW 476
+ + IGVLDI GFE FK NS L + H+FK+EQE+Y KE+I+W
Sbjct: 443 SERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINW 501
Query: 477 SYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKP 533
++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +P
Sbjct: 502 TFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEP 561
Query: 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPLP 588
+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 562 RFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNIA 618
Query: 589 EETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRC 648
QL LM TL +T PH++RC+ PNN PA E+ ++ QLRC
Sbjct: 619 SRAKKGANFLTVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRC 678
Query: 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQ 706
GVLE IRI+ G+P R + +F+ R+ LAP D + A +L+ + + F+
Sbjct: 679 NGVLEGIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNIDPEQFR 738
Query: 707 IGKTKIFLRAGQMAELDARR 726
G TKIF RAGQ+A ++ R
Sbjct: 739 FGITKIFFRAGQLARIEEAR 758
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/676 (44%), Positives = 432/676 (63%), Gaps = 41/676 (6%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 33 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 86
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+R+P IY M+ +KG
Sbjct: 87 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIP-IYTQEMVDIFKGR 145
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 206 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 265
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 266 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 325
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 326 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 381
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 382 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 441
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDIYGFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 442 QERKA-YFIGVLDIYGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 616
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 617 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 676
Query: 648 CGGVLEAIRISCAGYP 663
C GVLE IRI+ G+P
Sbjct: 677 CNGVLEGIRITRKGFP 692
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 543 bits (1399), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/678 (44%), Positives = 431/678 (63%), Gaps = 41/678 (6%)
Query: 13 HVWVE-DPEE--AWIDGQVLKITGKDVEVQTTKG-----KKVVANLSKIYPKDMEEPAGG 64
++W DP+E ++ G+++ T +T G KK AN D G
Sbjct: 33 YIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFD------G 86
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
V+DM++LSYL+EP V NL+ RY + IYTY+G L+A+NPF+ +P IY M+ +KG
Sbjct: 87 VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIP-IYTQEMVDIFKGR 145
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E++PH+FA++DVAYR+M+++ ++ S+L++GESGAGKTE TK +++YLA + GR
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 185 GRTV-EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERS 243
G V EQQ+L++NP+LEAFGNAKT RNNNSSRFGKF+EIQF+ G ISGA+I++YLLE+S
Sbjct: 206 GSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKS 265
Query: 244 RVCQISSPERNYHCFY-LLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302
RV S ERNYH FY LL A EE + L P++F+YLNQS C ++ GVSD+ ++
Sbjct: 266 RVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKI 325
Query: 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELL 362
TR+AMDIVG S+++Q +IF+++A ILH+GNI+F KG + ++ KD A L A+ +
Sbjct: 326 TRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTA---LNAASTVF 381
Query: 363 MCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIG 422
+P LE AL + ++ +++ + L+ + + SRD L K +Y RLF WLV KIN+ +
Sbjct: 382 GVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKINNVLC 441
Query: 423 QDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEID 475
Q+ + IGVLDI GFE FK NS L C + H+FK+EQEEY KE+I+
Sbjct: 442 QERKA-YFIGVLDISGFEIFKVNSFEQL-CINYTNEKLQQFFNHHMFKLEQEEYLKEKIN 499
Query: 476 WSYIEF-VDNQDVLDLIE-KKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532
W++I+F +D+Q +DLI+ ++P GI+ALLDE +FP +T T KL+ F K + ++ +
Sbjct: 500 WTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEE 559
Query: 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL---LSASNCPFVAGLF--PPL 587
P+FS+T+F + HYAG+VMY+ +L+KNKD P QDL S+ V LF P +
Sbjct: 560 PRFSKTEFGVTHYAGQVMYEIQDWLEKNKD---PLQQDLELCFKDSSDNVVTKLFNDPNI 616
Query: 588 PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLR 647
QL LM TL +T PH++RC+ PNN PA E+ ++ QLR
Sbjct: 617 ASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLR 676
Query: 648 CGGVLEAIRISCAGYPTR 665
C GVLE IRI+ G+P R
Sbjct: 677 CNGVLEGIRITRKGFPNR 694
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 322/775 (41%), Positives = 443/775 (57%), Gaps = 66/775 (8%)
Query: 12 SHVWVEDPEEAWIDGQVLK---ITGKDVEVQTTKGKKVVANLSKIYPKDMEEPA------ 62
+ VW+ DPEE W ++LK K ++++ +GK + L PK E P
Sbjct: 11 ARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLD---PKTKELPPLRNPDI 67
Query: 63 -GGVDDMTKLSYLHEPGVLRNLKTRY-ELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQ 120
G +D+T LSYLHEP VL NLK R+ + IYTY G +L+AINP+++LP IY ++
Sbjct: 68 LVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINA 126
Query: 121 YKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR 180
Y G G++ PH+FAVA+ AY+ M + ++ SI+VSGESGAGKT + K MRY A + G
Sbjct: 127 YSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSG- 185
Query: 181 TATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLL 240
+A+E VE++VL SNP++E+ GNAKT RN+NSSRFGK++EI FDK+ RI GA +RTYLL
Sbjct: 186 SASEA-NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLL 244
Query: 241 ERSRVCQISSPERNYHCFYLLC-NAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
E+SRV + ERNYH FY LC +A E + +LGN FHY Q + G+ DA +
Sbjct: 245 EKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKE 304
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAA 359
+ TR+A ++GIS+ Q IFR++A ILH+GN+EF+ +IP L
Sbjct: 305 MVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDP---LTIFC 361
Query: 360 ELLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINS 419
+L+ D + LC R + T E + + A+ +RD LAK IY+ LF+W+VD +N
Sbjct: 362 DLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNK 421
Query: 420 SIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC---------AHVFKMEQEEYT 470
++ S IGVLDIYGFE+F+ NS F I+ HVFK+EQEEY
Sbjct: 422 ALHSTVKQHSFIGVLDIYGFETFEINS---FEQFCINYANEKLQQQFNMHVFKLEQEEYM 478
Query: 471 KEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQT-FKSHKR 529
KE+I W+ I+F DNQ ++LIE K G++ LLDE C PK + +T+A KLY T
Sbjct: 479 KEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCAL 537
Query: 530 FVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLL-SASNCPFVAGLF---- 584
F KP+ S F I H+A +V YQ + FL+KNKD V E +L S+ + LF
Sbjct: 538 FEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 597
Query: 585 -------------------PPLPEETXXXXXXXXXXXXXXLQ----LQQLMDTLNSTEPH 621
P P + Q L LM+TLN+T PH
Sbjct: 598 KAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPH 657
Query: 622 YIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPE 681
Y+RC+KPN+ P F+ +QQLR GVLE IRIS AG+P+R + EF +R+ +L +
Sbjct: 658 YVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQ 717
Query: 682 FLEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARRAEILSSAA 734
+ D K CK +LEK L +Q GKTKIF RAGQ+A L+ RA+ L +A
Sbjct: 718 -KDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAAC 771
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 320/769 (41%), Positives = 440/769 (57%), Gaps = 66/769 (8%)
Query: 12 SHVWVEDPEEAWIDGQVLK---ITGKDVEVQTTKGKKVVANLSKIYPKDMEEPA------ 62
+ VW+ DPEE W ++LK K ++++ +GK + L PK E P
Sbjct: 11 ARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLD---PKTKELPPLRNPDI 67
Query: 63 -GGVDDMTKLSYLHEPGVLRNLKTRY-ELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQ 120
G +D+T LSYLHEP VL NLK R+ + IYTY G +L+AINP+++LP IY ++
Sbjct: 68 LVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLP-IYGEDIINA 126
Query: 121 YKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR 180
Y G G++ PH+FAVA+ AY+ M + ++ SI+VSGESGAGKT + K MRY A + G
Sbjct: 127 YSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSG- 185
Query: 181 TATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLL 240
+A+E VE++VL SNP++E+ GNAKT RN+NSSRFGK++EI FDK+ RI GA +RTYLL
Sbjct: 186 SASEA-NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLL 244
Query: 241 ERSRVCQISSPERNYHCFYLLC-NAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
E+SRV + ERNYH FY LC +A E + +LGN FHY Q + G+ DA +
Sbjct: 245 EKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKE 304
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAA 359
+ TR+A ++GIS+ Q IFR++A ILH+GN+EF+ +IP L
Sbjct: 305 MVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDP---LTIFC 361
Query: 360 ELLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINS 419
+L+ D + LC R + T E + + A+ +RD LAK IY+ LF+W+VD +N
Sbjct: 362 DLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNK 421
Query: 420 SIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC---------AHVFKMEQEEYT 470
++ S IGVLDIYGFE+F+ NS F I+ HVFK+EQEEY
Sbjct: 422 ALHSTVKQHSFIGVLDIYGFETFEINS---FEQFCINYANEKLQQQFNMHVFKLEQEEYM 478
Query: 471 KEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQT-FKSHKR 529
KE+I W+ I+F DNQ ++LIE K G++ LLDE C PK + +T+A KLY T
Sbjct: 479 KEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCAL 537
Query: 530 FVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLL-SASNCPFVAGLF---- 584
F KP+ S F I H+A +V YQ + FL+KNKD V E +L S+ + LF
Sbjct: 538 FEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 597
Query: 585 -------------------PPLPEETXXXXXXXXXXXXXXLQ----LQQLMDTLNSTEPH 621
P P + Q L LM+TLN+T PH
Sbjct: 598 KAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPH 657
Query: 622 YIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPE 681
Y+RC+KPN+ P F+ +QQLR GVLE IRIS AG+P+R + EF +R+ +L +
Sbjct: 658 YVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQ 717
Query: 682 FLEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARRAE 728
+ D K CK +LEK L +Q GKTKIF RAGQ+A L+ RA+
Sbjct: 718 -KDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRAD 765
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/749 (37%), Positives = 411/749 (54%), Gaps = 47/749 (6%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 4 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 61
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 62 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 121
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 122 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 177
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 237
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLATRRA 306
ERNYH FY LC E++ ER L +P F YLN+ + + D D++ A
Sbjct: 238 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTA 297
Query: 307 MDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDP 366
M +G+ ++++ +FRVVA +LH+GNI+F + +++ L+ AELL D
Sbjct: 298 MKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQ 357
Query: 367 VALEDALCKRIMITPE-----EVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSI 421
L +L R+M+T VIK L + A +RD LAKT+YS LFD +V+++N
Sbjct: 358 DDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCF 417
Query: 422 GQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC---------AHVFKMEQEEYTKE 472
+ +S IGVLDI GFE F+ NS F I+ C + K EQE Y KE
Sbjct: 418 PFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYCNEKLQQFFNERILKEEQELYQKE 473
Query: 473 EIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVK 532
+ + + +VDNQD +DLIE + GI+ +LDE P+ + + F + ++Q K H R
Sbjct: 474 GLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSI 533
Query: 533 PKFS--------RTD--FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAG 582
P+ S R D F I H+AG V Y++ QF++KN D + + L+ S F+
Sbjct: 534 PRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRE 593
Query: 583 LFPPLPEETXXXXXXXXXXXXXXL------QLQQLMDTLNSTEPHYIRCVKPNNLLKPAV 636
LF + QL L+D L ST +IRC+KPN +
Sbjct: 594 LFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHH 653
Query: 637 FENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKI 696
FE A I+ QL+C G++ + + G+P+R F E N + P+ L D ++ CK +
Sbjct: 654 FEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKAL 712
Query: 697 LEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ GL ++ G TK+F R G+ AE D
Sbjct: 713 FKALGLNEIDYKFGLTKVFFRPGKFAEFD 741
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/749 (37%), Positives = 411/749 (54%), Gaps = 47/749 (6%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 3 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 60
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 61 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 120
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 121 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 176
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 177 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 236
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLATRRA 306
ERNYH FY LC E++ ER L +P F YLN+ + + D D++ A
Sbjct: 237 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTA 296
Query: 307 MDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDP 366
M +G+ ++++ +FRVVA +LH+GNI+F + +++ L+ AELL D
Sbjct: 297 MKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQ 356
Query: 367 VALEDALCKRIMITPE-----EVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSI 421
L +L R+M+T VIK L + A +RD LAKT+YS LFD +V+++N
Sbjct: 357 DDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCF 416
Query: 422 GQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC---------AHVFKMEQEEYTKE 472
+ +S IGVLDI GFE F+ NS F I+ C + K EQE Y KE
Sbjct: 417 PFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYCNEKLQQFFNERILKEEQELYQKE 472
Query: 473 EIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVK 532
+ + + +VDNQD +DLIE + GI+ +LDE P+ + + F + ++Q K H R
Sbjct: 473 GLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSI 532
Query: 533 PKFS--------RTD--FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAG 582
P+ S R D F I H+AG V Y++ QF++KN D + + L+ S F+
Sbjct: 533 PRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRE 592
Query: 583 LFPPLPEETXXXXXXXXXXXXXXL------QLQQLMDTLNSTEPHYIRCVKPNNLLKPAV 636
LF + QL L+D L ST +IRC+KPN +
Sbjct: 593 LFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHH 652
Query: 637 FENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKI 696
FE A I+ QL+C G++ + + G+P+R F E N + P+ L D ++ CK +
Sbjct: 653 FEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKAL 711
Query: 697 LEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ GL ++ G TK+F R G+ AE D
Sbjct: 712 FKALGLNEIDYKFGLTKVFFRPGKFAEFD 740
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/749 (37%), Positives = 410/749 (54%), Gaps = 47/749 (6%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 3 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 60
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 61 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 120
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 121 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 176
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
+ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 177 IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 236
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLATRRA 306
ERNYH FY LC E++ ER L +P F YLN+ + + D D++ A
Sbjct: 237 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTA 296
Query: 307 MDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDP 366
M +G+ ++++ +FRVVA +LH+GNI+F + +++ L+ AELL D
Sbjct: 297 MKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQ 356
Query: 367 VALEDALCKRIMITPE-----EVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSI 421
L +L R+M+T VIK L + A +RD LAKT+YS LFD +V+++N
Sbjct: 357 DDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCF 416
Query: 422 GQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC---------AHVFKMEQEEYTKE 472
+ +S IGVLDI GFE F+ NS F I+ C + K EQE Y KE
Sbjct: 417 PFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYCNEKLQQFFNERILKEEQELYQKE 472
Query: 473 EIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVK 532
+ + + +VDNQD +DLIE + GI+ +LDE P+ + + F + ++Q K H R
Sbjct: 473 GLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSI 532
Query: 533 PKFS--------RTD--FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAG 582
P+ S R D F I H+AG V Y++ QF++KN D + + L+ S F+
Sbjct: 533 PRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRE 592
Query: 583 LFPPLPEETXXXXXXXXXXXXXXL------QLQQLMDTLNSTEPHYIRCVKPNNLLKPAV 636
LF + QL L+D L ST +IRC+KPN +
Sbjct: 593 LFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHH 652
Query: 637 FENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKI 696
FE A I+ QL+C G++ + + G+P+R F E N + P+ L D ++ CK +
Sbjct: 653 FEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKL-ARLDPRLFCKAL 711
Query: 697 LEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ GL ++ G TK+F R G+ AE D
Sbjct: 712 FKALGLNEIDYKFGLTKVFFRPGKFAEFD 740
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/775 (36%), Positives = 411/775 (53%), Gaps = 73/775 (9%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 3 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 60
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 61 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 120
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 121 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 176
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 177 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 236
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELV-------------- 292
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 237 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKS 296
Query: 293 ------------GVSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE 340
G+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 297 PEYLKAGSLKDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 356
Query: 341 VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSAL 395
+++ L+ AELL D L +L R+M+T VIK L + A
Sbjct: 357 TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQAN 416
Query: 396 VSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFII 455
+RD LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I
Sbjct: 417 NARDALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCI 472
Query: 456 SCC---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEAC 506
+ C + K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE
Sbjct: 473 NYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEEN 532
Query: 507 MFPKSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQF 556
P+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF
Sbjct: 533 RLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQF 592
Query: 557 LDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQ 610
++KN D + + L+ S F+ LF + QL
Sbjct: 593 VEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 652
Query: 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFE 670
L+D L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E
Sbjct: 653 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 712
Query: 671 FLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
N + P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 713 LYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 766
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 463 bits (1191), Expect = e-130, Method: Compositional matrix adjust.
Identities = 279/775 (36%), Positives = 410/775 (52%), Gaps = 73/775 (9%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 4 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 61
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 62 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 121
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 122 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 177
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 237
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 238 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKS 297
Query: 294 -------------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE 340
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 298 PEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 357
Query: 341 VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSAL 395
+++ L+ AELL D L +L R+M+T VIK L + A
Sbjct: 358 TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQAN 417
Query: 396 VSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFII 455
+RD LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I
Sbjct: 418 NARDALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCI 473
Query: 456 SCC---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEAC 506
+ C + K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE
Sbjct: 474 NYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEEN 533
Query: 507 MFPKSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQF 556
P+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF
Sbjct: 534 RLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQF 593
Query: 557 LDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQ 610
++KN D + + L+ S F+ LF + QL
Sbjct: 594 VEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 653
Query: 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFE 670
L+D L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E
Sbjct: 654 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 713
Query: 671 FLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
N + P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 714 LYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 767
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 279/775 (36%), Positives = 410/775 (52%), Gaps = 73/775 (9%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 3 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 60
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 61 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 120
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 121 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 176
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 177 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 236
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 237 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKS 296
Query: 294 -------------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE 340
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 297 PEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 356
Query: 341 VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSAL 395
+++ L+ AELL D L +L R+M+T VIK L + A
Sbjct: 357 TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQAN 416
Query: 396 VSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFII 455
+RD LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I
Sbjct: 417 NARDALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCI 472
Query: 456 SCC---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEAC 506
+ C + K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE
Sbjct: 473 NYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEEN 532
Query: 507 MFPKSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQF 556
P+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF
Sbjct: 533 RLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQF 592
Query: 557 LDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQ 610
++KN D + + L+ S F+ LF + QL
Sbjct: 593 VEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 652
Query: 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFE 670
L+D L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E
Sbjct: 653 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 712
Query: 671 FLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
N + P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 713 LYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 766
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 290/767 (37%), Positives = 429/767 (55%), Gaps = 68/767 (8%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLS-KIYPKD----MEEPA-GGVD 66
+ WV D +E + ++ G ++ V K+VA+ S + KD M P ++
Sbjct: 33 NCWVPDEKEGFASAEIQSSKGDEITV------KIVADSSTRTVKKDDIQSMNPPKFEKLE 86
Query: 67 DMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPF 126
DM ++YL+E VL NL++RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 87 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRK 145
Query: 127 GELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG-------- 178
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 146 TEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDE 205
Query: 179 -GRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I T
Sbjct: 206 EASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIET 264
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVS 295
YLLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + +
Sbjct: 265 YLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNID 323
Query: 296 DAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHL 355
D ++ A DI+G ++++++++F+ A+ILH+G ++F + P+++QA+
Sbjct: 324 DVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQR-------PREEQAESDG 376
Query: 356 KTAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFD 411
AE +C A L AL K + E++ + + + S LAK++Y R+F+
Sbjct: 377 TAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFN 436
Query: 412 WLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKME 465
WLV ++N ++ IGVLDI GFE F NS L + H+F +E
Sbjct: 437 WLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILE 496
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF 524
QEEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F +KLYQ
Sbjct: 497 QEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNH 555
Query: 525 KSHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNC 577
R F KP K +R + F + HYAG V Y +L+KNKD + LL AS
Sbjct: 556 MGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKE 615
Query: 578 PFVAGLFPPLPEE--------TXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPN 629
P VA LF PEE L +LM L ST PH++RC+ PN
Sbjct: 616 PLVAELFKA-PEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPN 674
Query: 630 NLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNYD 688
L +P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G D
Sbjct: 675 ELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVD 734
Query: 689 EKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 735 GKTVSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS 779
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 288/768 (37%), Positives = 429/768 (55%), Gaps = 67/768 (8%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLSKIYPKD----MEEPA-GGVDD 67
+ WV DP+E + ++ G+++ V K V N ++ KD M P ++D
Sbjct: 33 NCWVPDPKEGFASAEIQSSKGEEITV-----KIVSDNSTRTVKKDDIQQMNPPKFEKLED 87
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
M ++YL+E VL NL+ RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 88 MANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRKT 146
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG----GRTAT 183
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE TK ++ YLA + +T+
Sbjct: 147 EIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKTSE 206
Query: 184 EGR------TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
E ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I T
Sbjct: 207 EEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIET 266
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVS 295
YLLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + +
Sbjct: 267 YLLEKSRVTYQQSAERNYHIFYQICSNAIPELNEVMLITPDSGLYSFINQG-CLTVDNID 325
Query: 296 DAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHL 355
D ++ A DI+G +++++ ++F+ A+ILH+G ++F + P+++QA+
Sbjct: 326 DVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQR-------PREEQAESDG 378
Query: 356 KTAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFD 411
AE +C A L AL K + E++ + + Q + S L+K++Y R+F+
Sbjct: 379 TAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQVINSVGALSKSLYDRMFN 438
Query: 412 WLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKME 465
WLV ++N ++ IGVLDI GFE F NS L + H+F +E
Sbjct: 439 WLVKRVNRTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLE 498
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF 524
QEEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F + YQ
Sbjct: 499 QEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDYSYQNH 557
Query: 525 KSHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNC 577
R F KP K +R + F + HYAG V Y +LDKNKD + LL+ S
Sbjct: 558 IGKNRMFTKPGKPTRPNQGHAHFELHHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKE 617
Query: 578 PFVAGLFPPLPEETXXXXXXXXXXXXXXLQ---------LQQLMDTLNSTEPHYIRCVKP 628
P VA LF P+E Q L +LM L ST PH++RC+ P
Sbjct: 618 PLVAELFRA-PDEPAGGAGGKKKKKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIP 676
Query: 629 NNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNY 687
N L +P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G
Sbjct: 677 NELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFV 736
Query: 688 DEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
D K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 737 DGKTVSEKIL--TGLQMDPSEYRLGTTKVFFKAGVLGNLEEMRDERLS 782
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 290/767 (37%), Positives = 429/767 (55%), Gaps = 68/767 (8%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLS-KIYPKD----MEEPA-GGVD 66
+ WV D +E + ++ G ++ V K+VA+ S + KD M P ++
Sbjct: 33 NCWVPDEKEGFASAEIQSSKGDEITV------KIVADSSTRTVKKDDIQSMNPPKFEKLE 86
Query: 67 DMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPF 126
DM ++YL+E VL NL++RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 87 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRK 145
Query: 127 GELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG-------- 178
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 146 TEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDE 205
Query: 179 -GRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I T
Sbjct: 206 EASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIET 264
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVS 295
YLLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + +
Sbjct: 265 YLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNID 323
Query: 296 DAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHL 355
D ++ A DI+G ++++++++F+ A+ILH+G ++F + P+++QA+
Sbjct: 324 DVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQR-------PREEQAESDG 376
Query: 356 KTAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFD 411
AE +C A L AL K + E++ + + + S LAK++Y R+F+
Sbjct: 377 TAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFN 436
Query: 412 WLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKME 465
WLV ++N ++ IGVLDI GFE F NS L + H+F +E
Sbjct: 437 WLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILE 496
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF 524
QEEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F +KLYQ
Sbjct: 497 QEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNH 555
Query: 525 KSHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNC 577
R F KP K +R + F + HYAG V Y +L+KNKD + LL AS
Sbjct: 556 MGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKE 615
Query: 578 PFVAGLFPPLPEE--------TXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPN 629
P VA LF PEE L +LM L ST PH++RC+ PN
Sbjct: 616 PLVAELFKA-PEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPN 674
Query: 630 NLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNYD 688
L +P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G D
Sbjct: 675 ELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVD 734
Query: 689 EKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 735 GKTVSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS 779
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 291/768 (37%), Positives = 430/768 (55%), Gaps = 70/768 (9%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLS-KIYPKD----MEEPA-GGVD 66
+ WV D +E + ++ G ++ V K+VA+ S + KD M P ++
Sbjct: 33 NCWVPDEKEGFASAEIQSSKGDEITV------KIVADSSTRTVKKDDIQSMNPPKFEKLE 86
Query: 67 DMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPF 126
DM ++YL+E VL NL++RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 87 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRK 145
Query: 127 GELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG-------- 178
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 146 TEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDE 205
Query: 179 -GRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I T
Sbjct: 206 EASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIET 264
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVS 295
YLLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + +
Sbjct: 265 YLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNID 323
Query: 296 DAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHL 355
D ++ A DI+G ++++++++F+ A+ILH+G ++F + P+++QA+
Sbjct: 324 DVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQR-------PREEQAESDG 376
Query: 356 KTAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFD 411
AE +C A L AL K + E++ + + + S LAK++Y R+F+
Sbjct: 377 TAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFN 436
Query: 412 WLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKM 464
WLV ++N ++ IGVLDI GFE F NS L C + H+F +
Sbjct: 437 WLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQL-CINYTNERLQQFFNHHMFIL 495
Query: 465 EQEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQT 523
EQEEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F +KLYQ
Sbjct: 496 EQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQN 554
Query: 524 FKSHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASN 576
R F KP K +R + F + HYAG V Y +L+KNKD + LL AS
Sbjct: 555 HMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASK 614
Query: 577 CPFVAGLFPPLPEE--------TXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKP 628
P VA LF PEE L +LM L ST PH++RC+ P
Sbjct: 615 EPLVAELFKA-PEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIP 673
Query: 629 NNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNY 687
N L +P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G
Sbjct: 674 NELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFV 733
Query: 688 DEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
D K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 734 DGKTVSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS 779
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 290/767 (37%), Positives = 429/767 (55%), Gaps = 68/767 (8%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLS-KIYPKD----MEEPA-GGVD 66
+ WV D +E + ++ G ++ V K+VA+ S + KD M P ++
Sbjct: 28 NCWVPDEKEGFASAEIQSSKGDEITV------KIVADSSTRTVKKDDIQSMNPPKFEKLE 81
Query: 67 DMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPF 126
DM ++YL+E VL NL++RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 82 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRK 140
Query: 127 GELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG-------- 178
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 141 TEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDE 200
Query: 179 -GRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I T
Sbjct: 201 EASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIET 259
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVS 295
YLLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + +
Sbjct: 260 YLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNID 318
Query: 296 DAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHL 355
D ++ A DI+G ++++++++F+ A+ILH+G ++F + P+++QA+
Sbjct: 319 DVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQR-------PREEQAESDG 371
Query: 356 KTAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFD 411
AE +C A L AL K + E++ + + + S LAK++Y R+F+
Sbjct: 372 TAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFN 431
Query: 412 WLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKME 465
WLV ++N ++ IGVLDI GFE F NS L + H+F +E
Sbjct: 432 WLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILE 491
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF 524
QEEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F +KLYQ
Sbjct: 492 QEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNH 550
Query: 525 KSHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNC 577
R F KP K +R + F + HYAG V Y +L+KNKD + LL AS
Sbjct: 551 MGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKE 610
Query: 578 PFVAGLFPPLPEE--------TXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPN 629
P VA LF PEE L +LM L ST PH++RC+ PN
Sbjct: 611 PLVAELFKA-PEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPN 669
Query: 630 NLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNYD 688
L +P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G D
Sbjct: 670 ELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVD 729
Query: 689 EKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 730 GKTVSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS 774
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 290/767 (37%), Positives = 429/767 (55%), Gaps = 68/767 (8%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLS-KIYPKD----MEEPA-GGVD 66
+ WV D +E + ++ G ++ V K+VA+ S + KD M P ++
Sbjct: 29 NCWVPDEKEGFASAEIQSSKGDEITV------KIVADSSTRTVKKDDIQSMNPPKFEKLE 82
Query: 67 DMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPF 126
DM ++YL+E VL NL++RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 83 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRK 141
Query: 127 GELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG-------- 178
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE TK ++ YLA +
Sbjct: 142 TEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDE 201
Query: 179 -GRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
EG ++E Q++++NPVLEA+GNAKT RNNNSSRFGKF+ I F G+I+GA I T
Sbjct: 202 EASDKKEG-SLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIET 260
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVS 295
YLLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + +
Sbjct: 261 YLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQG-CLTVDNID 319
Query: 296 DAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHL 355
D ++ A DI+G ++++++++F+ A+ILH+G ++F + P+++QA+
Sbjct: 320 DVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQR-------PREEQAESDG 372
Query: 356 KTAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFD 411
AE +C A L AL K + E++ + + + S LAK++Y R+F+
Sbjct: 373 TAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFN 432
Query: 412 WLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKME 465
WLV ++N ++ IGVLDI GFE F NS L + H+F +E
Sbjct: 433 WLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILE 492
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF 524
QEEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F +KLYQ
Sbjct: 493 QEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNH 551
Query: 525 KSHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNC 577
R F KP K +R + F + HYAG V Y +L+KNKD + LL AS
Sbjct: 552 MGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKE 611
Query: 578 PFVAGLFPPLPEE--------TXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPN 629
P VA LF PEE L +LM L ST PH++RC+ PN
Sbjct: 612 PLVAELFKA-PEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPN 670
Query: 630 NLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNYD 688
L +P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G D
Sbjct: 671 ELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVD 730
Query: 689 EKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 731 GKTVSEKIL--AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS 775
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/775 (36%), Positives = 409/775 (52%), Gaps = 73/775 (9%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 3 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 60
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 61 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 120
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 121 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 176
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
+ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 177 IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 236
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 237 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKS 296
Query: 294 -------------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE 340
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 297 PEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 356
Query: 341 VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSAL 395
+++ L+ AELL D L +L R+M+T VIK L + A
Sbjct: 357 TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQAN 416
Query: 396 VSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFII 455
+RD LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I
Sbjct: 417 NARDALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCI 472
Query: 456 SCC---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEAC 506
+ C + K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE
Sbjct: 473 NYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEEN 532
Query: 507 MFPKSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQF 556
P+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF
Sbjct: 533 RLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQF 592
Query: 557 LDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQ 610
++KN D + + L+ S F+ LF + QL
Sbjct: 593 VEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 652
Query: 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFE 670
L+D L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E
Sbjct: 653 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 712
Query: 671 FLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
N + P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 713 LYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 766
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/772 (36%), Positives = 409/772 (52%), Gaps = 73/772 (9%)
Query: 14 VWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDDMTK 70
VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 3 VWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVEDNCS 60
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G +
Sbjct: 61 LMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMP 120
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQ 190
PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+ ++
Sbjct: 121 PHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQDIDD 176
Query: 191 QVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQISS 250
+++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 177 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGK 236
Query: 251 PERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG---------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 237 EERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEY 296
Query: 294 ----------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDS 343
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 297 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 356
Query: 344 SIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSALVSR 398
+++ L+ AELL D L +L R+M+T VIK L + A +R
Sbjct: 357 GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNAR 416
Query: 399 DGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC 458
D LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I+ C
Sbjct: 417 DALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYC 472
Query: 459 ---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFP 509
+ K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE P
Sbjct: 473 NEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLP 532
Query: 510 KSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQFLDK 559
+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF++K
Sbjct: 533 QPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEK 592
Query: 560 NKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQLMD 613
N D + + L+ S F+ LF + QL L+D
Sbjct: 593 NNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLD 652
Query: 614 TLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLN 673
L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E N
Sbjct: 653 KLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 712
Query: 674 RFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 713 MYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 763
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/772 (36%), Positives = 409/772 (52%), Gaps = 73/772 (9%)
Query: 14 VWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDDMTK 70
VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 16 VWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVEDNCS 73
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G +
Sbjct: 74 LMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMP 133
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQ 190
PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+ ++
Sbjct: 134 PHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQDIDD 189
Query: 191 QVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQISS 250
+++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 190 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGK 249
Query: 251 PERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG---------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 250 EERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEY 309
Query: 294 ----------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDS 343
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 310 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 369
Query: 344 SIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSALVSR 398
+++ L+ AELL D L +L R+M+T VIK L + A +R
Sbjct: 370 GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNAR 429
Query: 399 DGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC 458
D LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I+ C
Sbjct: 430 DALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYC 485
Query: 459 ---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFP 509
+ K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE P
Sbjct: 486 NEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLP 545
Query: 510 KSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQFLDK 559
+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF++K
Sbjct: 546 QPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEK 605
Query: 560 NKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQLMD 613
N D + + L+ S F+ LF + QL L+D
Sbjct: 606 NNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLD 665
Query: 614 TLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLN 673
L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E N
Sbjct: 666 KLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 725
Query: 674 RFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 726 MYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 776
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/775 (36%), Positives = 410/775 (52%), Gaps = 73/775 (9%)
Query: 11 GSHVWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDD 67
G VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 4 GKPVWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVED 61
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G
Sbjct: 62 NCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLG 121
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRT 187
+ PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+
Sbjct: 122 TMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQD 177
Query: 188 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247
++ +++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV 237
Query: 248 ISSPERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 238 QGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKS 297
Query: 294 -------------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE 340
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 298 PEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 357
Query: 341 VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSAL 395
+++ L+ AELL D L +L R+M+T VIK L + A
Sbjct: 358 TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQAN 417
Query: 396 VSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFII 455
+RD LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I
Sbjct: 418 NARDALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCI 473
Query: 456 SCC---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEAC 506
+ C + K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE
Sbjct: 474 NYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEEN 533
Query: 507 MFPKSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQF 556
P+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF
Sbjct: 534 RLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQF 593
Query: 557 LDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQ 610
++KN D + + L+ S F+ LF + QL
Sbjct: 594 VEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNL 653
Query: 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFE 670
L+D L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E
Sbjct: 654 LLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 713
Query: 671 FLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
N + P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 714 LYNMYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 767
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/772 (35%), Positives = 409/772 (52%), Gaps = 73/772 (9%)
Query: 14 VWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDDMTK 70
VW P + + G +++ G D +E KGK +A +++++P + E+ V+D
Sbjct: 16 VWAPHPTDGFQVGNIVR-RGPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVEDNCS 73
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G +
Sbjct: 74 LMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMP 133
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQ 190
PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+ ++
Sbjct: 134 PHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQDIDD 189
Query: 191 QVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQISS 250
+++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 190 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGK 249
Query: 251 PERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG---------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 250 EERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEY 309
Query: 294 ----------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDS 343
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 310 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 369
Query: 344 SIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSALVSR 398
+++ L+ AELL D L +L R+M+T VIK L + A +R
Sbjct: 370 GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNAR 429
Query: 399 DGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC 458
D LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I+ C
Sbjct: 430 DALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYC 485
Query: 459 ---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFP 509
+ K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE P
Sbjct: 486 NEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLP 545
Query: 510 KSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQFLDK 559
+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF++K
Sbjct: 546 QPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHENIRDDEGFIIRHFAGAVCYETTQFVEK 605
Query: 560 NKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQLMD 613
N D + + L+ S F+ LF + QL L+D
Sbjct: 606 NNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLD 665
Query: 614 TLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLN 673
L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E N
Sbjct: 666 KLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 725
Query: 674 RFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 726 MYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 776
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/772 (36%), Positives = 408/772 (52%), Gaps = 73/772 (9%)
Query: 14 VWVEDPEEAWIDGQVLKITGKD---VEVQTTKGKKVVANLSKIYPKDMEEPAGGVDDMTK 70
VW P + + G ++ I G D +E KGK +A +++++P + E+ V+D
Sbjct: 4 VWAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAE-EDSKKDVEDNCS 61
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
L YL+E +L N+K RY + IYTY NILIA+NP+ +P IY + ++ Y+G G +
Sbjct: 62 LMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMP 121
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQ 190
PHVFA+AD A+R M S SI+VSGESGAGKTE TK ++RYL + G+ +
Sbjct: 122 PHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT----ESYGTGQDIYD 177
Query: 191 QVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQISS 250
+++E+NP+LEAFGNAKTVRNNNSSRFGKFVEI F+++ + G + YLLE+SR+C
Sbjct: 178 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGK 237
Query: 251 PERNYHCFYLLCNAPQEEV-ERYKLGNPKTFHYLNQSTCFELVG---------------- 293
ERNYH FY LC E++ ER L +P F YLN+
Sbjct: 238 EERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEY 297
Query: 294 ----------VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDS 343
+ D D++ AM +G+ ++++ +FRVVA +LH+GNI+F +
Sbjct: 298 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 357
Query: 344 SIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE-----EVIKRSLDPQSALVSR 398
+++ L+ AELL D L +L R+M+T VIK L + A +R
Sbjct: 358 GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNAR 417
Query: 399 DGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIISCC 458
D LAKT+YS LFD +V+++N + +S IGVLDI GFE F+ NS F I+ C
Sbjct: 418 DALAKTVYSHLFDHVVNRVNQCFPFETSS-YFIGVLDIAGFEYFEHNSFEQ---FCINYC 473
Query: 459 ---------AHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFP 509
+ K EQE Y KE + + + +VDNQD +DLIE + GI+ +LDE P
Sbjct: 474 NEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLP 533
Query: 510 KSTHETFANKLYQTFKSHKRFVKPKFS--------RTD--FAIAHYAGEVMYQSDQFLDK 559
+ + + F + ++Q K H R P+ S R D F I H+AG V Y++ QF++K
Sbjct: 534 QPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEK 593
Query: 560 NKDYVVPEHQDLLSASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL------QLQQLMD 613
N D + + L+ S F+ LF + QL L+D
Sbjct: 594 NNDALHMSLESLICESRDKFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLD 653
Query: 614 TLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLN 673
L ST +IRC+KPN + FE A I+ QL+C G++ + + G+P+R F E N
Sbjct: 654 KLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 713
Query: 674 RFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELD 723
+ P+ L D ++ CK + + GL ++ G TK+F R G+ AE D
Sbjct: 714 MYKKYMPDKL-ARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFD 764
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/767 (37%), Positives = 423/767 (55%), Gaps = 66/767 (8%)
Query: 13 HVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLSKIYPKD----MEEPA-GGVDD 67
+ WV DP+E + ++ G+++ V K V N ++ KD M P ++D
Sbjct: 33 NCWVPDPKEGFASAEIQSSKGEEITV-----KIVSDNSTRTVKKDDIQQMNPPKFEKLED 87
Query: 68 MTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFG 127
M ++YL+E VL NL+ RY IYTY+G IA+NP++RLP IY ++ +Y+G
Sbjct: 88 MANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLP-IYTDSVIAKYRGKRKT 146
Query: 128 ELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE--- 184
E+ PH+F+VAD AY+ MV + ++ S L++GESGAGKTE+TK ++ Y A + +
Sbjct: 147 EIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTESTKKVIMYFARVAANLYKQKEE 206
Query: 185 ------GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTY 238
+E Q++E+NPVLEAFGNAKTVRNNNSSRFGKF+ I F G+I+GA I TY
Sbjct: 207 PVPNLRASNLEDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIRIHFGPTGKIAGADIETY 266
Query: 239 LLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKT--FHYLNQSTCFELVGVSD 296
LLE+SRV S ERNYH FY +C+ E+ L P + + ++NQ C + + D
Sbjct: 267 LLEKSRVTYQQSAERNYHIFYQICSNAIPELNEVMLITPDSGLYSFINQG-CLTVDNIDD 325
Query: 297 AHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLK 356
++ A DI+G +++++ ++F+ A+ILH+G ++F + P+++QA+
Sbjct: 326 VEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQR-------PREEQAESDGT 378
Query: 357 TAAE--LLMCDPVA--LEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDW 412
AE +C A L AL K + E++ + + Q + S L+K++Y R+F+W
Sbjct: 379 AEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQVINSVGALSKSLYDRMFNW 438
Query: 413 LVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQ 466
LV ++N ++ IGVLDI GFE F NS L + H+F +EQ
Sbjct: 439 LVKRVNRTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQ 498
Query: 467 EEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFK 525
EEY KE I W +I+F +D Q +DLIE KP GI+++L+E CMFPK+ ++F + YQ
Sbjct: 499 EEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDYSYQNHI 557
Query: 526 SHKR-FVKP-KFSRTD-----FAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCP 578
R F KP K +R + F + HYAG V Y +LDKNKD + LL+ S P
Sbjct: 558 GKNRMFTKPGKPTRPNQGHAHFELHHYAGNVPYSIAGWLDKNKDPINENVVSLLAVSKEP 617
Query: 579 FVAGLFPPLPEETXXXXXXXXXXXXXXLQ---------LQQLMDTLNSTEPHYIRCVKPN 629
VA LF P+E Q L +LM L T PH++RC+ PN
Sbjct: 618 LVAELFRA-PDEPAGGAGGKKKKKSSAFQTISAVHRESLNKLMCNLRRTNPHFVRCIIPN 676
Query: 630 NLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNYD 688
P + + ++ QL+C GVLE IRI G+P+R + EF R+ +LAP + +G D
Sbjct: 677 LEKDPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVD 736
Query: 689 EKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILS 731
K +KIL GLQ +++G TK+F +AG + L+ R E LS
Sbjct: 737 GKTVSEKIL--TGLQMDPSEYRLGTTKVFFKAGVLGNLEEMRDERLS 781
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 282/776 (36%), Positives = 421/776 (54%), Gaps = 60/776 (7%)
Query: 1 MQGTPVNIIVGSHVWVEDPEEAWIDGQVLKITGKDVEVQTTKGK--KVVA--NLSKIYPK 56
M+ T + + WV DP+ ++ ++ G +V V+T K + +VV ++ + P
Sbjct: 21 MEATSIPFDGKKNCWVPDPDFGFVGAEIQSTKGDEVTVKTDKTQETRVVKKDDIGQRNPP 80
Query: 57 DMEEPAGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAH 116
E DM L++L+E +L NL++RYE IYTY+G IAINP++RLP IY
Sbjct: 81 KFEMNM----DMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYRRLP-IYTQG 135
Query: 117 MMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176
++ +Y+G E+ PH+F++AD AY+ M+ + ++ S+L++GESGAGKTE TK +++Y A
Sbjct: 136 LVDKYRGKRRAEMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVIQYFAL 195
Query: 177 LGGRTATEGR-------------TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223
+ A + T+E Q+++ NPVLEA+GNAKT RNNNSSRFGKF+ I
Sbjct: 196 VAASLAGKKDKKEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIH 255
Query: 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFY-LLCNAPQEEVER-YKLGNPKTFH 281
F QG+I+GA I TYLLE+SRV S ERNYH FY LL A E +E+ + +P +
Sbjct: 256 FGTQGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQLLSPAFPENIEKILAVPDPGLYG 315
Query: 282 YLNQSTCFELVGVSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEF---SKG 338
++NQ T + G+ D + T A D++G +++++ ++++ ILH+G +++ +
Sbjct: 316 FINQGT-LTVDGIDDEEEMGLTDTAFDVLGFTDEEKLSMYKCTGCILHLGEMKWKQRGEQ 374
Query: 339 KEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSR 398
E D + + A A +LL C L K + E + + + S
Sbjct: 375 AEADGTAEAEKVAFLLGVNAGDLLKC--------LLKPKIKVGTEYVTQGRNKDQVTNSI 426
Query: 399 DGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-- 456
LAK++Y R+F+WLV ++N ++ + IGVLDI GFE F NS L +
Sbjct: 427 AALAKSLYDRMFNWLVRRVNQTLDTKAKRQFFIGVLDIAGFEIFDFNSFEQLCINYTNER 486
Query: 457 ----CCAHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKS 511
H+F +EQEEY KE I W +I+F +D Q ++LIE KP GI+++L+E CMFPK+
Sbjct: 487 LQQFFNHHMFVLEQEEYKKEGIVWEFIDFGLDLQACIELIE-KPMGILSILEEECMFPKA 545
Query: 512 THETFANKLYQT-FKSHKRFVKPK-----FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVV 565
+ +F NKLY + F KPK + F + HYAG V Y +LDKNKD +
Sbjct: 546 SDTSFKNKLYDNHLGKNPMFGKPKPPKAGCAEAHFCLHHYAGSVSYSIAGWLDKNKDPIN 605
Query: 566 PEHQDLLSASNCPFVAGLFPP----LPEETXXXXXXXXXXXXXXLQ---LQQLMDTLNST 618
+LL S P V LF P P + L +LM L ST
Sbjct: 606 ENVVELLQNSKEPIVKMLFTPPRILTPGGKKKKGKSAAFQTISSVHKESLNKLMKNLYST 665
Query: 619 EPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLL 678
PH++RC+ PN L P + + A ++ QLRC GVLE IRI G+P R + EF R+ +L
Sbjct: 666 HPHFVRCIIPNELKTPGLIDAALVLHQLRCNGVLEGIRICRKGFPNRIIYSEFKQRYSIL 725
Query: 679 APEFLEGNY-DEKVACKKILEKKGLQG--FQIGKTKIFLRAGQMAELDARRAEILS 731
AP + + D KV K L L +++G TK+F +AG + L+ R E LS
Sbjct: 726 APNAVPSGFADGKVVTDKALSALQLDPNEYRLGNTKVFFKAGVLGMLEDMRDERLS 781
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/681 (38%), Positives = 397/681 (58%), Gaps = 34/681 (4%)
Query: 62 AGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQY 121
A GV D L+ + E + NL R++ + IYTY G+++I+ NPF+ L +IY ++ Y
Sbjct: 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNL-NIYKESDIKAY 65
Query: 122 KGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRT 181
G E+ PH++A+A+ AYR+M ++ +++SGESGAGKTE +K +M++L F+
Sbjct: 66 NGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ 125
Query: 182 ATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLE 241
+ G + + +L+SNP+LEAFGNAKT+RN+NSSRFGK++E+QF+ G G I YLLE
Sbjct: 126 SPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLE 185
Query: 242 RSRVCQISSPERNYHCFY-LLCNAPQEEVERYKLG-NPKTFHYLNQSTCFELVGVSDAHD 299
+SRV + ER++H FY +L Q +++ L N + YL +S CF++ + D+ +
Sbjct: 186 KSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGE 245
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE--VDSSIPKDDQAKFHLKT 357
+ +AM+ +G+ E DQ +I+R++AAILHIGNI F++ E ++ K K L
Sbjct: 246 FKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK-SLAA 304
Query: 358 AAELLMCDPVALEDALCKRIMITPE----EVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
AA L D +L ALC R + T EVI +D A SRD LAK +Y RLF+WL
Sbjct: 305 AASCLKTDQQSLSIALCYRSISTGVGKRCEVISVPMDCNQAAYSRDALAKALYERLFNWL 364
Query: 414 VDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPL-ICFIISCCAHVF-----KMEQE 467
V KIN+ I +IG+LDIYGFE F++NS L I F +F K EQE
Sbjct: 365 VSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQE 424
Query: 468 EYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSH 527
EY +E I+W IE+ +N+ + +LIEKKP G+I+LLDEAC+ KST +TF + + + F+ +
Sbjct: 425 EYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKN 484
Query: 528 ---KRFVKPK---FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVA 581
+ +V K T F + HYAG+V Y FLDKNKD + + + +S+ P V
Sbjct: 485 PHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQ 544
Query: 582 GLFPPL-PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENA 640
GLFPP PE++ + L+ TL + PHY+RC+K N+ + V +
Sbjct: 545 GLFPPTRPEDSKKRPETAGSQFRNA--MNALITTLLACSPHYVRCIKSNDNKQAGVIDED 602
Query: 641 NIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLA----PEFLEGNYDEKVACKKI 696
+ Q+R G+LE +R+ AG+ R + F NR+ +L P F N K A + I
Sbjct: 603 RVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSF---NGTAKQATELI 659
Query: 697 LEKKGL--QGFQIGKTKIFLR 715
L++ + + ++GKTK+F+R
Sbjct: 660 LQQHNIDKEEIRMGKTKVFIR 680
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/681 (38%), Positives = 396/681 (58%), Gaps = 34/681 (4%)
Query: 62 AGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQY 121
A GV D L+ + E + NL R++ + IYTY G+++I+ NPF+ L +IY ++ Y
Sbjct: 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNL-NIYKESDIKAY 65
Query: 122 KGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRT 181
G E+ PH++A+A+ AYR+M ++ +++SGESGAGKTE +K +M++L F+
Sbjct: 66 NGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ 125
Query: 182 ATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLE 241
+ G + + +L+SNP+LEAFGNAKT+RN+NSSRFGK++E+QF+ G G I YLLE
Sbjct: 126 SPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLE 185
Query: 242 RSRVCQISSPERNYHCFY-LLCNAPQEEVERYKLG-NPKTFHYLNQSTCFELVGVSDAHD 299
+SRV + ER++H FY +L Q +++ L N + YL +S CF++ + D+ +
Sbjct: 186 KSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGE 245
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE--VDSSIPKDDQAKFHLKT 357
+ +AM+ +G+ E DQ +I+R++AAILHIGNI F++ E ++ K K L
Sbjct: 246 FKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK-SLAA 304
Query: 358 AAELLMCDPVALEDALCKRIMITPE----EVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
AA L D +L ALC R + T VI +D A SRD LAK +Y RLF+WL
Sbjct: 305 AASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWL 364
Query: 414 VDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPL-ICFIISCCAHVF-----KMEQE 467
V KIN+ I +IG+LDIYGFE F++NS L I F +F K EQE
Sbjct: 365 VSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQE 424
Query: 468 EYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSH 527
EY +E I+W IE+ +N+ + +LIEKKP G+I+LLDEAC+ KST +TF + + + F+ +
Sbjct: 425 EYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKN 484
Query: 528 ---KRFVKPK---FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVA 581
+ +V K T F + HYAG+V Y FLDKNKD + + + +S+ P V
Sbjct: 485 PHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQ 544
Query: 582 GLFPPL-PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENA 640
GLFPP PE++ + L+ TL + PHY+RC+K N+ + V +
Sbjct: 545 GLFPPTRPEDSKKRPETAGSQFRNA--MNALITTLLACSPHYVRCIKSNDNKQAGVIDED 602
Query: 641 NIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLA----PEFLEGNYDEKVACKKI 696
+ Q+R G+LE +R+ AG+ R + F NR+ +L P F N K A + I
Sbjct: 603 RVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSF---NGTAKQATELI 659
Query: 697 LEKKGL--QGFQIGKTKIFLR 715
L++ + + ++GKTK+F+R
Sbjct: 660 LQQHNIDKEEIRMGKTKVFIR 680
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 289/835 (34%), Positives = 446/835 (53%), Gaps = 93/835 (11%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTK-GKKVVANLSKIYPKDMEEPA-GGVDDMTKL 71
VWV + + + + G +V V+ + GKKV LSK + M P V+DM +L
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVT--LSKDDIQKMNPPKFSKVEDMAEL 91
Query: 72 SYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSP 131
+ L+E VL NL+ RY IYTY+G + INP+++LP IY ++ YKG E+ P
Sbjct: 92 TCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGKKRHEMPP 150
Query: 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR-------TATE 184
H++A+AD AYR+M+ + + SIL +GESGAGKTE TK +++YLA + + T+
Sbjct: 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 210
Query: 185 GRT-----VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYL 239
G + +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TYL
Sbjct: 211 GPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270
Query: 240 LERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
LE+SR + + ER +H FY L E++ L + + + D
Sbjct: 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEM 330
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVD-SSIPKDDQAKFHLKTA 358
+ T AM I+G +E++Q +I RVV+++L +GNI F K + D +S+P + TA
Sbjct: 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN--------TA 382
Query: 359 AELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
A+ + C + + R ++TP +V++++ + A + + LAK + RLF W+
Sbjct: 383 AQKV-CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWI 441
Query: 414 VDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPL-ICFIISCCAHVFK-----MEQ 466
+ ++N ++ + S +G+LDI GFE F+ NS L I + +F +EQ
Sbjct: 442 LTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQ 501
Query: 467 EEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLYQT 523
EEY +E I+W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F KL Q
Sbjct: 502 EEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQE 561
Query: 524 FKSHKRFVKPK--FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVA 581
+H +F K K +T+F I HYAG+V Y + +L KN D + LL+ S+ FVA
Sbjct: 562 QGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVA 621
Query: 582 GLF-----------------PPLPEETXXXX-XXXXXXXXXXLQLQQLMDTLNSTEPHYI 623
L+ LP + QL +LM TL +T P+++
Sbjct: 622 DLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFV 681
Query: 624 RCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL 683
RC+ PN+ + + +++QLRC GVLE IRI G+P R F EF R+ +LA +
Sbjct: 682 RCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAI 741
Query: 684 -EGNYDEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTXX 738
+G D K AC IL K L+ ++IG++KIF R G +A L+ R
Sbjct: 742 PKGFMDGKQAC--ILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER------------ 787
Query: 739 XXXXXXXXXXXXXALREATIVLQSLCRGRLACRVFDSMKKEAAAVK-IQKHIRRY 792
+ + I Q+ CRG LA + F +++ ++ IQ ++R +
Sbjct: 788 -----------DLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSF 831
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 292/836 (34%), Positives = 447/836 (53%), Gaps = 95/836 (11%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTK-GKKVVANLSKIYPKDMEEPA-GGVDDMTKL 71
VWV + + + + G +V V+ + GKKV LSK + M P V+DM +L
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVT--LSKDDIQKMNPPKFSKVEDMAEL 91
Query: 72 SYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSP 131
+ L+E VL NL+ RY IYTY+G + INP+++LP IY ++ YKG E+ P
Sbjct: 92 TCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGKKRHEMPP 150
Query: 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR-------TATE 184
H++A+AD AYR+M+ + + SIL +GESGAGKTE TK +++YLA + + T+
Sbjct: 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 210
Query: 185 GRT-----VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYL 239
G + +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TYL
Sbjct: 211 GPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270
Query: 240 LERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
LE+SR + + ER +H FY L E++ L + + + D
Sbjct: 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEM 330
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVD-SSIPKDDQAKFHLKTA 358
+ T AM I+G +E++Q +I RVV+++L +GNI F K + D +S+P + TA
Sbjct: 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN--------TA 382
Query: 359 AELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
A+ + C + + R ++TP +V++++ + A + + LAK + RLF W+
Sbjct: 383 AQKV-CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWI 441
Query: 414 VDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICF------IISCCAH-VFKME 465
+ ++N ++ + S +G+LDI GFE F+ NS L C + H +F +E
Sbjct: 442 LTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL-CINYTNEKLQQLFNHTMFILE 500
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLYQ 522
QEEY +E I+W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F KL Q
Sbjct: 501 QEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQ 560
Query: 523 TFKSHKRFVKPK--FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFV 580
+H +F K K +T+F I HYAG+V Y + +L KN D + LL+ S+ FV
Sbjct: 561 EQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFV 620
Query: 581 AGLF-----------------PPLPEETXXXX-XXXXXXXXXXLQLQQLMDTLNSTEPHY 622
A L+ LP + QL +LM TL +T P++
Sbjct: 621 ADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNF 680
Query: 623 IRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682
+RC+ PN+ + + +++QLRC GVLE IRI G+P R F EF R+ +LA
Sbjct: 681 VRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANA 740
Query: 683 L-EGNYDEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTX 737
+ +G D K AC IL K L+ ++IG++KIF R G +A L+ R
Sbjct: 741 IPKGFMDGKQAC--ILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER----------- 787
Query: 738 XXXXXXXXXXXXXXALREATIVLQSLCRGRLACRVFDSMKKEAAAVK-IQKHIRRY 792
+ + I Q+ CRG LA + F +++ A+K IQ++ Y
Sbjct: 788 ------------DLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 292/836 (34%), Positives = 447/836 (53%), Gaps = 95/836 (11%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTK-GKKVVANLSKIYPKDMEEPA-GGVDDMTKL 71
VWV + + + + G +V V+ + GKKV LSK + M P V+DM +L
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVT--LSKDDIQKMNPPKFSKVEDMAEL 91
Query: 72 SYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSP 131
+ L+E VL NL+ RY IYTY+G + INP+++LP IY ++ YKG E+ P
Sbjct: 92 TCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGKKRHEMPP 150
Query: 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR-------TATE 184
H++A+AD AYR+M+ + + SIL +GESGAGKTE TK +++YLA + + T+
Sbjct: 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 210
Query: 185 GRT-----VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYL 239
G + +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TYL
Sbjct: 211 GPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270
Query: 240 LERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
LE+SR + + ER +H FY L E++ L + + + D
Sbjct: 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEM 330
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVD-SSIPKDDQAKFHLKTA 358
+ T AM I+G +E++Q +I RVV+++L +GNI F K + D +S+P + TA
Sbjct: 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN--------TA 382
Query: 359 AELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
A+ + C + + R ++TP +V++++ + A + + LAK + RLF W+
Sbjct: 383 AQKV-CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWI 441
Query: 414 VDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICF------IISCCAH-VFKME 465
+ ++N ++ + S +G+LDI GFE F+ NS L C + H +F +E
Sbjct: 442 LTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL-CINYTNEKLQQLFNHTMFILE 500
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLYQ 522
QEEY +E I+W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F KL Q
Sbjct: 501 QEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQ 560
Query: 523 TFKSHKRFVKPK--FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFV 580
+H +F K K +T+F I HYAG+V Y + +L KN D + LL+ S+ FV
Sbjct: 561 EQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFV 620
Query: 581 AGLF-----------------PPLPEETXXXX-XXXXXXXXXXLQLQQLMDTLNSTEPHY 622
A L+ LP + QL +LM TL +T P++
Sbjct: 621 ADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNF 680
Query: 623 IRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682
+RC+ PN+ + + +++QLRC GVLE IRI G+P R F EF R+ +LA
Sbjct: 681 VRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANA 740
Query: 683 L-EGNYDEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTX 737
+ +G D K AC IL K L+ ++IG++KIF R G +A L+ R
Sbjct: 741 IPKGFMDGKQAC--ILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER----------- 787
Query: 738 XXXXXXXXXXXXXXALREATIVLQSLCRGRLACRVFDSMKKEAAAVK-IQKHIRRY 792
+ + I Q+ CRG LA + F +++ A+K IQ++ Y
Sbjct: 788 ------------DLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 437 bits (1123), Expect = e-122, Method: Compositional matrix adjust.
Identities = 292/836 (34%), Positives = 447/836 (53%), Gaps = 95/836 (11%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTK-GKKVVANLSKIYPKDMEEPA-GGVDDMTKL 71
VWV + + + + G +V V+ + GKKV LSK + M P V+DM +L
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVT--LSKDDIQKMNPPKFSKVEDMAEL 91
Query: 72 SYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSP 131
+ L+E VL NL+ RY IYTY+G + INP+++LP IY ++ YKG E+ P
Sbjct: 92 TCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGKKRHEMPP 150
Query: 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR-------TATE 184
H++A+AD AYR+M+ + + SIL +GESGAGKTE TK +++YLA + + T+
Sbjct: 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 210
Query: 185 GRT-----VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYL 239
G + +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TYL
Sbjct: 211 GPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270
Query: 240 LERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
LE+SR + + ER +H FY L E++ L + + + D
Sbjct: 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEM 330
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVD-SSIPKDDQAKFHLKTA 358
+ T AM I+G +E++Q +I RVV+++L +GNI F K + D +S+P + TA
Sbjct: 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN--------TA 382
Query: 359 AELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
A+ + C + + R ++TP +V++++ + A + + LAK + RLF W+
Sbjct: 383 AQKV-CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWI 441
Query: 414 VDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICF------IISCCAH-VFKME 465
+ ++N ++ + S +G+LDI GFE F+ NS L C + H +F +E
Sbjct: 442 LTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL-CINYTNEKLQQLFNHTMFILE 500
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLYQ 522
QEEY +E I+W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F KL Q
Sbjct: 501 QEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQ 560
Query: 523 TFKSHKRFVKPK--FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFV 580
+H +F K K +T+F I HYAG+V Y + +L KN D + LL+ S+ FV
Sbjct: 561 EQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFV 620
Query: 581 AGLF-----------------PPLPEETXXXX-XXXXXXXXXXLQLQQLMDTLNSTEPHY 622
A L+ LP + QL +LM TL +T P++
Sbjct: 621 ADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNF 680
Query: 623 IRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682
+RC+ PN+ + + +++QLRC GVLE IRI G+P R F EF R+ +LA
Sbjct: 681 VRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANA 740
Query: 683 L-EGNYDEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTX 737
+ +G D K AC IL K L+ ++IG++KIF R G +A L+ R
Sbjct: 741 IPKGFMDGKQAC--ILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER----------- 787
Query: 738 XXXXXXXXXXXXXXALREATIVLQSLCRGRLACRVFDSMKKEAAAVK-IQKHIRRY 792
+ + I Q+ CRG LA + F +++ A+K IQ++ Y
Sbjct: 788 ------------DLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/753 (34%), Positives = 415/753 (55%), Gaps = 42/753 (5%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLSKIYPKDMEEPAGGVDDMTKLSY 73
V+V D ++ ++ +++ G V +T GK V ++ ++ + ++DM L++
Sbjct: 37 VFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPK-FDKIEDMAMLTF 95
Query: 74 LHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHV 133
LHEP VL NLK RY IYTY+G + +NP++ LP +Y ++ Y+G E PH+
Sbjct: 96 LHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLP-VYTPEVVAAYRGKKRSEAPPHI 154
Query: 134 FAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL---GGRTATE---GR- 186
F+++D AY+ M+ + ++ SIL++GESGAGKT TK +++Y A + G R+ + G+
Sbjct: 155 FSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKG 214
Query: 187 TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVC 246
T+E Q++++NP LEAFGNAKTVRN+NSSRFGKF+ I F G+++ A I TYLLE+SRV
Sbjct: 215 TLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVI 274
Query: 247 QISSPERNYHCFY-LLCNAPQEEVERYKL-GNPKTFHYLNQSTCFELVGVSDAHDYLATR 304
ER+YH FY +L N E ++ + NP + +++Q + + DA + +AT
Sbjct: 275 FQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGET-TVASIDDAEELMATD 333
Query: 305 RAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMC 364
A D++G + +++ +++++ AI+H GN++F + + + P + +A L+
Sbjct: 334 NAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTE---EADKSAYLMGL 390
Query: 365 DPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQD 424
+ L LC + E + + + Q + + LAK +Y R+F+W+V +IN+++
Sbjct: 391 NSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK 450
Query: 425 PNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------CCAHVFKMEQEEYTKEEIDWSY 478
+ IGVLDI GFE F NS L + H+F +EQEEY KE I+W++
Sbjct: 451 QPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTF 510
Query: 479 IEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQT-FKSHKRFVKPKFS 536
I+F +D Q +DLIE KP GI+++L+E CMFPK+T TF KL+ F KP+
Sbjct: 511 IDFGMDLQACIDLIE-KPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNI 569
Query: 537 R----TDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLF-------P 585
+ F++ HYAG V Y +L KNKD + L S+ ++ LF
Sbjct: 570 KGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADA 629
Query: 586 PLPEETXXXXXXXXXXXXXXLQ---LQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANI 642
P+ + L L +LM L ST PH++RC+ PN P V +N +
Sbjct: 630 PIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLV 689
Query: 643 MQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNY-DEKVACKKILEKK 700
M QLRC GVLE IRI G+P R + +F R+ +L P + EG + D + +K+L
Sbjct: 690 MHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSL 749
Query: 701 GL--QGFQIGKTKIFLRAGQMAELDARRAEILS 731
+ ++ G TK+F +AG + L+ R E LS
Sbjct: 750 DIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 287/816 (35%), Positives = 436/816 (53%), Gaps = 94/816 (11%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTK-GKKVVANLSKIYPKDMEEPA-GGVDDMTKL 71
VWV + + + + G +V V+ + GKKV LSK + M P V+DM +L
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVT--LSKDDIQKMNPPKFSKVEDMAEL 91
Query: 72 SYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSP 131
+ L+E VL NL+ RY IYTY+G + INP+++LP IY ++ YKG E+ P
Sbjct: 92 TCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGKKRHEMPP 150
Query: 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR-------TATE 184
H++A+AD AYR+M+ + + SIL +GESGAGKTE TK +++YLA + + T+
Sbjct: 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 210
Query: 185 GRT-----VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYL 239
G + +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TYL
Sbjct: 211 GPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270
Query: 240 LERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
LE+SR + + ER +H FY L E++ L + + + D
Sbjct: 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEM 330
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVD-SSIPKDDQAKFHLKTA 358
+ T AM I+G +E++Q +I RVV+++L +GNI F K + D +S+P + TA
Sbjct: 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDN--------TA 382
Query: 359 AELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWL 413
A+ + C + + R ++TP +V++++ + A + + LAK + RLF W+
Sbjct: 383 AQKV-CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWI 441
Query: 414 VDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICF------IISCCAH-VFKME 465
+ ++N ++ + S +G+LDI GFE F+ NS L C + H +F +E
Sbjct: 442 LTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL-CINYTNEKLQQLFNHTMFILE 500
Query: 466 QEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLYQ 522
QEEY +E I+W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F KL Q
Sbjct: 501 QEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQ 560
Query: 523 TFKSHKRFVKPK--FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFV 580
+H +F K K +T+F I HYAG+V Y + +L KN D + LL+ S+ FV
Sbjct: 561 EQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFV 620
Query: 581 AGLF-----------------PPLPEETXXXX-XXXXXXXXXXLQLQQLMDTLNSTEPHY 622
A L+ LP + QL +LM TL +T P++
Sbjct: 621 ADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNF 680
Query: 623 IRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682
+RC+ PN+ + + +++QLRC GVLE IRI G+P R F EF R+ +LA
Sbjct: 681 VRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANA 740
Query: 683 L-EGNYDEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTX 737
+ +G D K AC IL K L+ ++IG++KIF R G +A L+ R
Sbjct: 741 IPKGFMDGKQAC--ILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER----------- 787
Query: 738 XXXXXXXXXXXXXXALREATIVLQSLCRGRLACRVF 773
+ + I Q+ CRG LA + F
Sbjct: 788 ------------DLKITDVIIAFQAQCRGYLARKAF 811
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 267/762 (35%), Positives = 411/762 (53%), Gaps = 51/762 (6%)
Query: 12 SHVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLSKIYPKDMEEPA-GGVDDMTK 70
S V+V P+E+++ G + G V V+T G+ + +++ M P ++DM
Sbjct: 33 SSVFVVHPKESFVKGTIQSKEGGKVTVKTEGGETLTVKEDQVF--SMNPPKYDKIEDMAM 90
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
+++LHEP VL NLK RY IYTY+G + +NP++ LP +Y+ ++ Y+G E
Sbjct: 91 MTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLP-VYNPKVVLAYRGKKRQEAP 149
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGG-----RTATEG 185
PH+F+++D AY+ M+ + ++ SIL++GESGAGKT TK +++Y A + + G
Sbjct: 150 PHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSG 209
Query: 186 R---TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLER 242
+ T+E Q++ +NP+LEAFGNAKTVRN+NSSRFGKF+ I F G+++ A I TYLLE+
Sbjct: 210 KMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEK 269
Query: 243 SRVCQISSPERNYHCFY-LLCNAPQEEVERYKL-GNPKTFHYLNQSTCFELVGVSDAHDY 300
SRV ER+YH FY ++ N E ++ + NP +HY++Q + + D +
Sbjct: 270 SRVTFQLPAERSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSQGEI-TVPSIDDQEEL 328
Query: 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAE 360
+AT A+DI+G S ++ AI+++ A++H GN++F + + + + P + AA
Sbjct: 329 MATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVA---DKAAY 385
Query: 361 LLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSS 420
L+ + L ALC + E + + S LAK +Y ++F W+V +IN
Sbjct: 386 LMGLNSAELLKALCYPRVKVGNEFVTKGQTVSQVHNSVGALAKAVYEKMFLWMVIRINQQ 445
Query: 421 IGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEE 473
+ + IGVLDI GFE F NS L C + H+F +EQEEY KE
Sbjct: 446 LDTKQPRQYFIGVLDIAGFEIFDFNSFEQL-CINFTNEKLQQFFNHHMFVLEQEEYKKEG 504
Query: 474 IDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLY-QTFKSHKRFV 531
I+W +I+F +D ++LIE KP GI ++L+E CMFPK+T +F NKLY Q F
Sbjct: 505 IEWEFIDFGMDLAACIELIE-KPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQ 563
Query: 532 KPKFSR----TDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPL 587
KPK ++ F++ HYAG V Y +L+KNKD + L S+ +A LF
Sbjct: 564 KPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFATY 623
Query: 588 ----------PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVF 637
L +LM L ST PH++RC+ PN P
Sbjct: 624 GGEAEGGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAM 683
Query: 638 ENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLL-APEFLEGNY-DEKVACKK 695
E+ ++ QLRC GVLE IRI G+P+R + +F R+ +L A EG + D K A +K
Sbjct: 684 EHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEK 743
Query: 696 ILEKKGLQG--FQIGKTKIFLRAGQMAELDARR----AEILS 731
+L + ++ G TK+F +AG + L+ R AEI++
Sbjct: 744 LLGSIDVDHTQYRFGHTKVFFKAGLLGLLEEMRDDKLAEIIT 785
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 279/768 (36%), Positives = 421/768 (54%), Gaps = 69/768 (8%)
Query: 14 VWVEDPEEAWIDGQVLKITGKDVEVQTTK-GKKVVANLSKIYPKDMEEPA-GGVDDMTKL 71
VWV + + + + G +V V+ + GKKV LSK + M P V+DM +L
Sbjct: 34 VWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVT--LSKDDIQKMNPPKFSKVEDMAEL 91
Query: 72 SYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSP 131
+ L+E VL NL+ RY IYTY+G + INP+++LP IY ++ YKG E+ P
Sbjct: 92 TCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLP-IYSEKIIDMYKGKKRHEMPP 150
Query: 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGR-------TATE 184
H++A+AD AYR+M+ + + SIL +GESGAGKTE TK +++YLA + + T+
Sbjct: 151 HIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 210
Query: 185 GRT-----VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYL 239
G + +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I TYL
Sbjct: 211 GPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYL 270
Query: 240 LERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHD 299
LE+SR + + ER +H FY L E++ L + + + D
Sbjct: 271 LEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEM 330
Query: 300 YLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAA 359
+ T AM I+G +E++Q +I RVV+++L +GNI F K + DQA TAA
Sbjct: 331 FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNT-------DQASMPDNTAA 383
Query: 360 ELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLV 414
+ + C + + R ++TP +V++++ + A + + LAK + RLF W++
Sbjct: 384 QKV-CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWIL 442
Query: 415 DKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICF------IISCCAH-VFKMEQ 466
++N ++ + S +G+LDI GFE F+ NS L C + H +F +EQ
Sbjct: 443 TRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQL-CINYTNEKLQQLFNHTMFILEQ 501
Query: 467 EEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLYQT 523
EEY +E I+W++I+F +D Q ++LIE+ P G++ALLDE C FPK+T +F KL Q
Sbjct: 502 EEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQE 561
Query: 524 FKSHKRFVKPK--FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVA 581
+H +F K K +T+F I HYAG+V Y + +L KN D + LL+ S+ FVA
Sbjct: 562 QGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVA 621
Query: 582 GLF-----------------PPLPEETXXXX-XXXXXXXXXXLQLQQLMDTLNSTEPHYI 623
L+ LP + QL +LM TL +T P+++
Sbjct: 622 DLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFV 681
Query: 624 RCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL 683
RC+ PN+ + + +++QLRC GVLE IRI G+P R F EF R+ +LA +
Sbjct: 682 RCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAI 741
Query: 684 -EGNYDEKVACKKILEKKGLQ----GFQIGKTKIFLRAGQMAELDARR 726
+G D K AC IL K L+ ++IG++KIF R G +A L+ R
Sbjct: 742 PKGFMDGKQAC--ILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEER 787
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 254/708 (35%), Positives = 402/708 (56%), Gaps = 59/708 (8%)
Query: 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA 124
+DM +L+ L+E VL NL+ RY IYTY+G + INP+++LP IY +++ Y+G
Sbjct: 62 AEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLP-IYTEAIVEMYRGK 120
Query: 125 PFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE 184
E+ PHV+AV + AYR+M+ + + SIL +GESGAGKTE TK +++YLA + ++ +
Sbjct: 121 KRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVA--SSPK 178
Query: 185 GRT-------VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237
GR +E+Q+L++NP+LEAFGNAKTV+N+NSSRFGKF+ I FD G I GA I T
Sbjct: 179 GRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIET 238
Query: 238 YLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDA 297
YLLE+SR + + E ++H FY L E+++ L P + HY + +
Sbjct: 239 YLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCS-HYRFLTNGPSSSPGQER 297
Query: 298 HDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKT 357
+ T ++ ++G S ++ ++ R+V+A+L GNI + + D + D+ T
Sbjct: 298 ELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDN-------T 350
Query: 358 AAELLMCDPVALEDALCKRIMITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDW 412
AA+ L C + L R ++TP + ++++ + A + + LAK Y RLF W
Sbjct: 351 AAQKL-CRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRW 409
Query: 413 LVDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICF------IISCCAH-VFKM 464
LV ++N ++ + P S +G+LDI GFE F+ NS L C + H +F +
Sbjct: 410 LVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQL-CINYTNEKLQQLFNHTMFVL 468
Query: 465 EQEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPKSTHETFANKLY 521
EQEEY +E I W++++F +D Q +DLIE+ P G++ALLDE C FPK+T ++F K+
Sbjct: 469 EQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVA 528
Query: 522 QTFKSHKRFVKPKFSR--TDFAIAHYAGEVMYQSDQFLDKNKD-------YVVPEHQDLL 572
Q H +F +P+ R DF++ HYAG+V Y+++++L KN D ++ + D L
Sbjct: 529 QEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRL 588
Query: 573 SASNCPFVAGLFPPLPEETXXXXXXXXXXXXXXL----------QLQQLMDTLNSTEPHY 622
+A V G+ L + + + L +LM TL++T P +
Sbjct: 589 TAEIWKDVEGIV-GLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSF 647
Query: 623 IRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682
+RC+ PN+ + E ++ QLRC GVLE IRI G+P R F EF R+ +L P
Sbjct: 648 VRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNA 707
Query: 683 L-EGNYDEKVACKKILEKKGLQG--FQIGKTKIFLRAGQMAELDARRA 727
+ +G D K AC+K+++ L +++G++KIF RAG +A+L+ RA
Sbjct: 708 IPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERA 755
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/758 (33%), Positives = 388/758 (51%), Gaps = 47/758 (6%)
Query: 12 SHVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLSKIYPKDMEEPA-GGVDDMTK 70
S V+V P+++++ G + G V V T G+ + +++ M P ++DM
Sbjct: 36 SSVFVVHPKQSFVXGTIQSXEGGXVTVXTEGGETLTVKEDQVF--SMNPPXYDXIEDMAM 93
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
+++LHEP VL NL RY IYTY+G + +NP+ LP +Y+ ++ Y+G E
Sbjct: 94 MTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLP-VYNPXVVLAYRGKKRQEAP 152
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGG-----RTATEG 185
PH+F+++D AY+ M+ + ++ SIL++GESGAGKT T +++Y A + + G
Sbjct: 153 PHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSG 212
Query: 186 R---TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLER 242
+ T+E Q++ +NP+LEAFGNA TVRN+NSSRFG F+ I F G+++ A I TYLLE
Sbjct: 213 KMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEX 272
Query: 243 SRVCQISSPERNYHCFY-LLCNAPQEEVERYKL-GNPKTFHYLNQSTCFELVGVSDAHDY 300
SRV ER+YH FY ++ N E ++ + NP +HY+++ + + D +
Sbjct: 273 SRVTFQLPAERSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEI-TVPSIDDQEEL 331
Query: 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAE 360
+AT A+DI+G S + AI+ + A++H GN++F + + + + P + AA
Sbjct: 332 MATDSAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVA---DXAAY 388
Query: 361 LLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSS 420
L+ + L ALC + E + S LA +Y +F W+V +IN
Sbjct: 389 LMGLNSAELLKALCYPRVGVGNEAVTXGETVSEVHNSVGALAXAVYEXMFLWMVIRINQQ 448
Query: 421 IGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEE 473
+ + IGVLDI GFE F NS L C + H+F +EQEEY E
Sbjct: 449 LDTKQPRQYFIGVLDIAGFEIFDFNSFEQL-CINFTNEXLQQFFNHHMFVLEQEEYXXEG 507
Query: 474 IDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLY-QTFKSHKRFV 531
I+W +I+F +D ++LIE P GI ++L+E CMFPK+T +F N LY + F
Sbjct: 508 IEWEFIDFGMDLAACIELIE-XPMGIFSILEEECMFPKATDTSFXNXLYDEHLGKSNNFQ 566
Query: 532 KPKFSR----TDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPL 587
KPK ++ F++ HYAG V Y +L+ N D + L S+ +A LF
Sbjct: 567 KPKPAKGKAEAHFSLVHYAGTVDYNISGWLEXNXDPLNETVIGLYQXSSVXTLALLFATY 626
Query: 588 ----------PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVF 637
L LM L ST PH++RC+ PN P
Sbjct: 627 GGEAEGGGGKKGGKKKGSSFQTVSALFRENLNXLMANLRSTHPHFVRCIIPNETXTPGAM 686
Query: 638 ENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLL-APEFLEGNY-DEKVACKK 695
E+ ++ QLRC GVLE IRI G+P+R + +F R+ +L A EG + D K A +K
Sbjct: 687 EHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEK 746
Query: 696 ILEKKGLQGFQ--IGKTKIFLRAGQMAELDARRAEILS 731
+L + Q G T +F AG + L+ R + L+
Sbjct: 747 LLGGGDVDHTQYAFGHTXVFFXAGLLGLLEEMRDDXLA 784
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/758 (33%), Positives = 388/758 (51%), Gaps = 47/758 (6%)
Query: 12 SHVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLSKIYPKDMEEPA-GGVDDMTK 70
S V+V P+++++ G + G V V T G+ + +++ M P ++DM
Sbjct: 33 SSVFVVHPKQSFVXGTIQSXEGGXVTVXTEGGETLTVKEDQVF--SMNPPXYDXIEDMAM 90
Query: 71 LSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELS 130
+++LHEP VL NL RY IYTY+G + +NP+ LP +Y+ ++ Y+G E
Sbjct: 91 MTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLP-VYNPXVVLAYRGKKRQEAP 149
Query: 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGG-----RTATEG 185
PH+F+++D AY+ M+ + ++ SIL++GESGAGKT T +++Y A + + G
Sbjct: 150 PHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSG 209
Query: 186 R---TVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLER 242
+ T+E Q++ +NP+LEAFGNA TVRN+NSSRFG F+ I F G+++ A I TYLLE
Sbjct: 210 KMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEX 269
Query: 243 SRVCQISSPERNYHCFY-LLCNAPQEEVERYKL-GNPKTFHYLNQSTCFELVGVSDAHDY 300
SRV ER+YH FY ++ N E ++ + NP +HY+++ + + D +
Sbjct: 270 SRVTFQLPAERSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEI-TVPSIDDQEEL 328
Query: 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAE 360
+AT A+DI+G S + AI+ + A++H GN++F + + + + P + AA
Sbjct: 329 MATDSAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVA---DXAAY 385
Query: 361 LLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSS 420
L+ + L ALC + E + S LA +Y +F W+V +IN
Sbjct: 386 LMGLNSAELLKALCYPRVGVGNEAVTXGETVSEVHNSVGALAXAVYEXMFLWMVIRINQQ 445
Query: 421 IGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEE 473
+ + IGVLDI GFE F NS L C + H+F +EQEEY E
Sbjct: 446 LDTKQPRQYFIGVLDIAGFEIFDFNSFEQL-CINFTNEXLQQFFNHHMFVLEQEEYXXEG 504
Query: 474 IDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLY-QTFKSHKRFV 531
I+W +I+F +D ++LIE P GI ++L+E CMFPK+T +F N LY + F
Sbjct: 505 IEWEFIDFGMDLAACIELIE-XPMGIFSILEEECMFPKATDTSFXNXLYDEHLGKSNNFQ 563
Query: 532 KPKFSR----TDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPL 587
KPK ++ F++ HYAG V Y +L+ N D + L S+ +A LF
Sbjct: 564 KPKPAKGKAEAHFSLVHYAGTVDYNISGWLEXNXDPLNETVIGLYQXSSVXTLALLFATY 623
Query: 588 ----------PEETXXXXXXXXXXXXXXLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVF 637
L LM L ST PH++RC+ PN P
Sbjct: 624 GGEAEGGGGKKGGKKKGSSFQTVSALFRENLNXLMANLRSTHPHFVRCIIPNETXTPGAM 683
Query: 638 ENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLL-APEFLEGNY-DEKVACKK 695
E+ ++ QLRC GVLE IRI G+P+R + +F R+ +L A EG + D K A +K
Sbjct: 684 EHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEK 743
Query: 696 ILEKKGLQGFQ--IGKTKIFLRAGQMAELDARRAEILS 731
+L + Q G T +F AG + L+ R + L+
Sbjct: 744 LLGGGDVDHTQYAFGHTXVFFXAGLLGLLEEMRDDXLA 781
>pdb|2F6H|X Chain X, Myosin V Cargo Binding Domain
Length = 419
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 1331 LKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWC--YK 1388
+K+ H+ + V T + ++++ FN L+++R S+ G + + LE WC +
Sbjct: 218 MKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHG 277
Query: 1389 ATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMY 1444
TD G+ + L+H+ Q L + + + +D I +C L+ QL ++ + Y
Sbjct: 278 LTD---GT--ECLQHLIQTAKLLQVRKYTIEDID-ILRGICYSLTPAQLQKLISQY 327
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 153 ILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAK 206
+L++GESG GK +++ RY G ++ Q++ ES E FG+ K
Sbjct: 155 VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES----ELFGHEK 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,226,010
Number of Sequences: 62578
Number of extensions: 1604312
Number of successful extensions: 5824
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4924
Number of HSP's gapped (non-prelim): 258
length of query: 1525
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1414
effective length of database: 8,027,179
effective search space: 11350431106
effective search space used: 11350431106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)