Query 000426
Match_columns 1525
No_of_seqs 570 out of 2480
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 7E-237 1E-241 2199.2 98.8 1362 3-1467 1-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 6E-203 1E-207 1915.0 72.3 762 5-772 27-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 7E-187 2E-191 1721.5 64.3 747 59-819 4-758 (862)
4 KOG0161 Myosin class II heavy 100.0 1E-184 3E-189 1809.5 89.8 767 6-802 25-822 (1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 3E-187 5E-192 1753.9 60.5 667 63-730 1-674 (674)
6 cd01380 MYSc_type_V Myosin mot 100.0 6E-183 1E-187 1724.4 58.3 657 64-726 1-691 (691)
7 cd01377 MYSc_type_II Myosin mo 100.0 4E-182 8E-187 1717.5 59.5 659 62-726 4-693 (693)
8 cd01381 MYSc_type_VII Myosin m 100.0 2E-182 5E-187 1710.9 57.2 654 64-726 1-671 (671)
9 cd01378 MYSc_type_I Myosin mot 100.0 5E-181 1E-185 1702.2 57.8 655 64-726 1-674 (674)
10 cd01383 MYSc_type_VIII Myosin 100.0 1E-180 2E-185 1694.8 57.6 648 63-726 8-677 (677)
11 cd01387 MYSc_type_XV Myosin mo 100.0 8E-180 2E-184 1689.4 57.6 653 64-726 2-677 (677)
12 cd01385 MYSc_type_IX Myosin mo 100.0 3E-179 6E-184 1687.8 60.5 656 63-727 7-689 (692)
13 KOG0164 Myosin class I heavy c 100.0 2E-179 4E-184 1556.1 53.1 722 62-801 7-756 (1001)
14 cd01382 MYSc_type_VI Myosin mo 100.0 3E-179 7E-184 1693.3 59.8 656 62-725 3-715 (717)
15 KOG0163 Myosin class VI heavy 100.0 4E-176 8E-181 1525.3 71.7 776 10-803 3-837 (1259)
16 cd01379 MYSc_type_III Myosin m 100.0 6E-177 1E-181 1654.7 58.5 632 64-726 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 3E-175 7E-180 1658.5 59.5 659 63-727 6-677 (677)
18 cd00124 MYSc Myosin motor doma 100.0 2E-173 4E-178 1647.1 58.8 655 64-726 1-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 3E-173 6E-178 1640.0 57.2 653 65-726 2-767 (767)
20 KOG0162 Myosin class I heavy c 100.0 1E-173 3E-178 1504.3 48.0 687 62-760 17-725 (1106)
21 PF00063 Myosin_head: Myosin h 100.0 5E-165 1E-169 1589.7 48.5 646 65-715 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 5E-115 1E-119 1105.5 20.3 798 63-869 61-1008(1062)
23 PF01843 DIL: DIL domain; Int 99.9 3.3E-27 7.2E-32 233.8 5.1 105 1343-1450 1-105 (105)
24 KOG1892 Actin filament-binding 99.9 9.9E-22 2.1E-26 236.8 20.1 268 1146-1492 586-865 (1629)
25 KOG0161 Myosin class II heavy 99.2 1.8E-07 3.9E-12 128.4 45.5 448 354-846 324-818 (1930)
26 cd01363 Motor_domain Myosin an 98.7 2.8E-08 6E-13 109.2 6.3 90 133-231 8-98 (186)
27 KOG0160 Myosin class V heavy c 98.6 2.9E-07 6.4E-12 117.9 12.9 87 778-867 672-758 (862)
28 COG5022 Myosin heavy chain [Cy 98.4 0.00012 2.5E-09 97.1 31.1 89 779-867 745-834 (1463)
29 KOG0520 Uncharacterized conser 98.4 4.9E-07 1.1E-11 115.8 8.5 129 729-874 808-938 (975)
30 PF02736 Myosin_N: Myosin N-te 98.3 2.3E-06 5.1E-11 70.1 6.7 41 11-51 1-41 (42)
31 KOG4229 Myosin VII, myosin IXB 98.1 1.1E-06 2.3E-11 115.7 3.4 215 598-820 789-1007(1062)
32 KOG0520 Uncharacterized conser 98.1 3.5E-06 7.5E-11 108.2 7.6 129 731-865 756-904 (975)
33 KOG1029 Endocytic adaptor prot 97.7 0.0091 2E-07 74.3 25.1 76 967-1042 436-511 (1118)
34 KOG0971 Microtubule-associated 97.6 0.087 1.9E-06 67.1 33.1 29 1313-1341 897-925 (1243)
35 KOG0971 Microtubule-associated 97.4 0.1 2.2E-06 66.6 28.9 78 966-1043 394-474 (1243)
36 KOG1029 Endocytic adaptor prot 97.3 0.14 3E-06 64.4 29.3 24 1363-1386 1008-1031(1118)
37 KOG0250 DNA repair protein RAD 97.2 0.78 1.7E-05 61.0 35.0 28 1340-1367 930-957 (1074)
38 KOG0164 Myosin class I heavy c 96.9 0.0081 1.8E-07 74.4 13.4 84 777-870 694-787 (1001)
39 KOG0250 DNA repair protein RAD 96.9 2.9 6.4E-05 55.8 37.2 73 972-1044 391-463 (1074)
40 PRK11637 AmiB activator; Provi 96.9 0.33 7.1E-06 60.7 28.2 32 1012-1043 221-252 (428)
41 PF09726 Macoilin: Transmembra 96.9 0.25 5.5E-06 64.6 27.5 35 967-1001 544-578 (697)
42 TIGR02169 SMC_prok_A chromosom 96.8 5 0.00011 56.7 47.7 10 434-443 5-14 (1164)
43 TIGR02169 SMC_prok_A chromosom 96.8 5.2 0.00011 56.5 45.2 6 1175-1180 617-622 (1164)
44 KOG0933 Structural maintenance 96.8 0.28 6.1E-06 63.9 25.5 70 976-1045 788-857 (1174)
45 PRK04863 mukB cell division pr 96.7 3.7 8.1E-05 58.4 38.3 39 1007-1045 439-477 (1486)
46 PF12718 Tropomyosin_1: Tropom 96.7 0.22 4.8E-06 52.5 20.5 107 914-1041 33-139 (143)
47 PRK11637 AmiB activator; Provi 96.6 0.47 1E-05 59.4 26.3 29 1008-1036 224-252 (428)
48 PF00612 IQ: IQ calmodulin-bin 96.6 0.0026 5.6E-08 44.2 3.6 19 732-750 2-20 (21)
49 PF00612 IQ: IQ calmodulin-bin 96.6 0.0027 5.9E-08 44.1 3.6 19 828-846 2-20 (21)
50 KOG0163 Myosin class VI heavy 96.6 1.8 3.9E-05 54.7 29.4 60 786-853 780-839 (1259)
51 KOG2128 Ras GTPase-activating 96.5 0.069 1.5E-06 71.6 18.5 116 758-873 511-645 (1401)
52 PF07888 CALCOCO1: Calcium bin 96.4 0.79 1.7E-05 57.6 25.6 9 657-665 42-50 (546)
53 KOG0933 Structural maintenance 96.3 1.9 4.1E-05 56.6 28.7 21 155-179 30-50 (1174)
54 KOG4643 Uncharacterized coiled 96.2 1.8 3.9E-05 56.8 27.5 30 882-911 406-435 (1195)
55 PRK03918 chromosome segregatio 96.2 0.63 1.4E-05 63.7 25.9 18 153-170 26-43 (880)
56 KOG0999 Microtubule-associated 96.1 0.69 1.5E-05 56.5 22.1 39 1008-1046 168-216 (772)
57 PF09726 Macoilin: Transmembra 96.1 2.6 5.6E-05 55.5 29.6 61 982-1042 594-654 (697)
58 PHA02562 46 endonuclease subun 96.1 1.2 2.5E-05 57.9 26.8 31 1011-1041 352-382 (562)
59 PF06785 UPF0242: Uncharacteri 96.0 1.4 3E-05 51.1 22.6 78 968-1045 134-222 (401)
60 PRK02224 chromosome segregatio 96.0 3.3 7.2E-05 56.8 31.3 10 712-721 133-142 (880)
61 KOG0925 mRNA splicing factor A 95.9 0.006 1.3E-07 73.1 3.8 56 103-167 24-79 (699)
62 KOG0995 Centromere-associated 95.9 6.3 0.00014 49.4 29.0 60 843-902 265-326 (581)
63 COG1196 Smc Chromosome segrega 95.7 16 0.00036 51.6 46.3 37 1374-1411 946-982 (1163)
64 KOG2128 Ras GTPase-activating 95.7 0.2 4.4E-06 67.4 16.8 115 737-851 513-646 (1401)
65 KOG0996 Structural maintenance 95.7 13 0.00029 50.1 41.1 17 1373-1389 938-954 (1293)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.6 0.91 2E-05 47.3 18.1 34 1014-1047 95-128 (132)
67 PF15070 GOLGA2L5: Putative go 95.6 2 4.3E-05 55.8 24.7 30 1258-1287 411-446 (617)
68 COG4942 Membrane-bound metallo 95.5 6.2 0.00013 48.3 27.1 37 1006-1042 213-249 (420)
69 PF12718 Tropomyosin_1: Tropom 95.5 1.3 2.9E-05 46.7 19.1 58 986-1043 77-134 (143)
70 PHA02562 46 endonuclease subun 95.5 3.2 6.9E-05 53.8 27.1 53 993-1045 341-393 (562)
71 KOG0994 Extracellular matrix g 95.5 12 0.00026 50.0 30.3 56 990-1045 1690-1745(1758)
72 PF08317 Spc7: Spc7 kinetochor 95.5 3.2 6.9E-05 50.0 24.8 54 968-1021 209-262 (325)
73 KOG0980 Actin-binding protein 95.4 4.1 8.8E-05 53.1 25.9 55 967-1021 465-519 (980)
74 KOG2991 Splicing regulator [RN 95.4 6 0.00013 44.5 25.3 41 1005-1045 266-306 (330)
75 KOG1853 LIS1-interacting prote 95.4 4.2 9.1E-05 45.5 22.5 78 969-1046 99-179 (333)
76 KOG0980 Actin-binding protein 95.3 14 0.0003 48.5 30.0 25 602-626 226-251 (980)
77 KOG0976 Rho/Rac1-interacting s 95.3 12 0.00025 48.3 28.5 24 979-1002 253-276 (1265)
78 PRK03918 chromosome segregatio 95.3 7.8 0.00017 53.2 30.9 8 712-719 130-137 (880)
79 PF12128 DUF3584: Protein of u 95.2 24 0.00052 50.2 42.7 32 736-767 227-258 (1201)
80 COG1579 Zn-ribbon protein, pos 95.1 3 6.4E-05 47.5 21.2 23 917-939 53-75 (239)
81 TIGR00606 rad50 rad50. This fa 95.0 11 0.00023 54.1 31.7 21 151-171 29-49 (1311)
82 PRK09039 hypothetical protein; 94.9 0.96 2.1E-05 54.7 18.0 18 918-935 76-93 (343)
83 PTZ00014 myosin-A; Provisional 94.8 0.07 1.5E-06 70.9 8.9 42 827-868 777-818 (821)
84 smart00015 IQ Short calmodulin 94.8 0.031 6.7E-07 41.0 3.1 21 779-799 3-23 (26)
85 TIGR02168 SMC_prok_B chromosom 94.8 30 0.00064 49.0 49.4 10 693-702 124-133 (1179)
86 PF14662 CCDC155: Coiled-coil 94.7 2.2 4.8E-05 46.5 18.1 72 974-1045 66-137 (193)
87 PF15619 Lebercilin: Ciliary p 94.7 8.1 0.00018 43.0 23.2 67 969-1035 119-189 (194)
88 PRK09039 hypothetical protein; 94.7 3.8 8.3E-05 49.7 22.4 12 855-866 39-50 (343)
89 TIGR00606 rad50 rad50. This fa 94.7 4.3 9.4E-05 58.0 26.4 12 355-366 172-183 (1311)
90 PF00261 Tropomyosin: Tropomyo 94.6 11 0.00024 43.4 26.1 35 1008-1042 181-215 (237)
91 PRK04863 mukB cell division pr 94.6 34 0.00075 49.1 39.6 26 1355-1383 1257-1282(1486)
92 COG4372 Uncharacterized protei 94.6 8.9 0.00019 45.6 23.6 69 969-1037 211-279 (499)
93 smart00015 IQ Short calmodulin 94.6 0.038 8.3E-07 40.5 3.2 20 731-750 3-22 (26)
94 PF08317 Spc7: Spc7 kinetochor 94.4 9.9 0.00021 45.9 25.0 9 665-673 13-21 (325)
95 PF04849 HAP1_N: HAP1 N-termin 94.4 13 0.00029 43.8 24.8 67 977-1043 229-295 (306)
96 PF00261 Tropomyosin: Tropomyo 94.4 8.3 0.00018 44.4 23.2 55 990-1044 170-224 (237)
97 KOG0996 Structural maintenance 94.4 29 0.00062 47.2 43.3 10 716-725 250-259 (1293)
98 PF00038 Filament: Intermediat 94.4 15 0.00033 43.9 30.5 70 879-948 70-149 (312)
99 KOG4674 Uncharacterized conser 94.2 40 0.00088 48.4 38.8 65 888-952 770-834 (1822)
100 KOG1103 Predicted coiled-coil 94.0 14 0.0003 43.1 23.3 18 887-904 142-159 (561)
101 KOG4643 Uncharacterized coiled 94.0 30 0.00066 46.1 35.0 19 1257-1275 826-844 (1195)
102 smart00787 Spc7 Spc7 kinetocho 94.0 13 0.00029 44.4 24.3 10 664-673 8-17 (312)
103 PRK02224 chromosome segregatio 94.0 36 0.00079 46.8 40.9 18 1321-1338 721-738 (880)
104 KOG0977 Nuclear envelope prote 93.9 2.1 4.5E-05 53.9 18.1 79 968-1046 106-184 (546)
105 COG3883 Uncharacterized protei 93.9 16 0.00034 42.3 23.7 25 916-940 80-104 (265)
106 PF13207 AAA_17: AAA domain; P 93.9 0.043 9.2E-07 55.6 3.0 23 152-174 1-23 (121)
107 PF12128 DUF3584: Protein of u 93.9 45 0.00098 47.5 42.4 37 1009-1045 496-532 (1201)
108 KOG0994 Extracellular matrix g 93.8 35 0.00075 46.1 39.1 37 85-122 192-229 (1758)
109 COG4372 Uncharacterized protei 93.8 19 0.00041 43.0 31.9 71 964-1034 213-283 (499)
110 KOG4593 Mitotic checkpoint pro 93.8 28 0.00061 44.9 33.0 23 1427-1449 632-661 (716)
111 KOG0612 Rho-associated, coiled 93.7 11 0.00023 51.2 24.5 37 538-574 212-253 (1317)
112 PF14662 CCDC155: Coiled-coil 93.7 13 0.00028 40.8 24.8 26 969-994 103-128 (193)
113 KOG0999 Microtubule-associated 93.6 15 0.00033 45.6 23.6 29 1013-1041 190-218 (772)
114 PF15066 CAGE1: Cancer-associa 93.6 20 0.00044 43.9 24.4 16 399-414 50-65 (527)
115 PRK07196 fliI flagellum-specif 93.5 0.14 3E-06 63.3 7.0 42 133-174 138-179 (434)
116 smart00787 Spc7 Spc7 kinetocho 93.5 9.4 0.0002 45.7 21.9 41 1003-1043 218-258 (312)
117 PF10481 CENP-F_N: Cenp-F N-te 93.4 1.8 3.9E-05 49.0 14.7 72 975-1046 60-131 (307)
118 PF13851 GAS: Growth-arrest sp 93.2 9.2 0.0002 42.8 20.1 75 967-1041 92-167 (201)
119 COG1196 Smc Chromosome segrega 93.0 58 0.0013 46.3 46.4 14 431-444 3-16 (1163)
120 KOG0964 Structural maintenance 93.0 43 0.00094 44.7 28.5 64 983-1046 433-496 (1200)
121 KOG1853 LIS1-interacting prote 92.9 20 0.00043 40.4 23.3 25 1020-1044 160-184 (333)
122 PRK10884 SH3 domain-containing 92.9 1.1 2.5E-05 50.0 12.3 75 969-1046 94-168 (206)
123 PRK01156 chromosome segregatio 92.9 53 0.0011 45.4 38.3 34 1012-1045 411-444 (895)
124 PF04111 APG6: Autophagy prote 92.8 1.5 3.2E-05 52.5 14.1 78 969-1046 51-128 (314)
125 PF07888 CALCOCO1: Calcium bin 92.8 36 0.00078 43.4 39.5 39 1007-1045 414-452 (546)
126 PF13401 AAA_22: AAA domain; P 92.8 0.074 1.6E-06 54.4 2.8 29 148-176 2-30 (131)
127 PF00038 Filament: Intermediat 92.8 27 0.00058 41.7 34.6 28 877-904 110-137 (312)
128 PF04156 IncA: IncA protein; 92.7 4.3 9.3E-05 44.9 16.7 63 979-1041 127-189 (191)
129 KOG1003 Actin filament-coating 92.6 19 0.0004 39.5 22.1 55 990-1044 138-192 (205)
130 PF08614 ATG16: Autophagy prot 92.6 0.78 1.7E-05 51.0 10.7 63 983-1045 117-179 (194)
131 PF15397 DUF4618: Domain of un 92.6 24 0.00052 40.8 25.1 32 1015-1046 191-222 (258)
132 PF09789 DUF2353: Uncharacteri 92.6 28 0.00061 41.5 24.9 24 917-940 80-103 (319)
133 PF05667 DUF812: Protein of un 92.6 6.3 0.00014 51.0 20.0 36 1008-1043 445-480 (594)
134 TIGR02680 conserved hypothetic 92.5 72 0.0016 46.0 32.4 28 151-178 25-52 (1353)
135 PF13191 AAA_16: AAA ATPase do 92.5 0.087 1.9E-06 57.2 3.0 34 144-177 18-51 (185)
136 PF13238 AAA_18: AAA domain; P 92.2 0.097 2.1E-06 53.1 2.8 22 153-174 1-22 (129)
137 PF05701 WEMBL: Weak chloropla 92.2 45 0.00098 43.0 28.3 196 850-1045 201-414 (522)
138 PF15254 CCDC14: Coiled-coil d 92.1 20 0.00044 46.5 22.7 19 917-935 428-446 (861)
139 cd00009 AAA The AAA+ (ATPases 92.0 0.2 4.4E-06 51.2 4.9 29 147-175 16-44 (151)
140 KOG0249 LAR-interacting protei 92.0 9.7 0.00021 48.6 19.6 24 1364-1395 756-780 (916)
141 TIGR03015 pepcterm_ATPase puta 91.8 0.17 3.7E-06 58.8 4.6 28 148-175 41-68 (269)
142 KOG0982 Centrosomal protein Nu 91.8 37 0.00081 41.2 23.6 12 1034-1045 406-417 (502)
143 cd02019 NK Nucleoside/nucleoti 91.8 0.15 3.2E-06 46.8 3.1 22 153-174 2-23 (69)
144 TIGR02322 phosphon_PhnN phosph 91.8 0.13 2.7E-06 56.1 3.2 25 151-175 2-26 (179)
145 TIGR03185 DNA_S_dndD DNA sulfu 91.7 58 0.0013 43.3 28.4 38 1007-1044 425-462 (650)
146 KOG2129 Uncharacterized conser 91.7 37 0.0008 41.0 24.6 27 967-993 252-278 (552)
147 KOG4674 Uncharacterized conser 91.7 88 0.0019 45.2 34.1 22 841-862 658-679 (1822)
148 PRK09270 nucleoside triphospha 91.6 0.28 6.2E-06 55.9 5.9 34 146-179 29-62 (229)
149 TIGR01843 type_I_hlyD type I s 91.6 23 0.00049 44.0 23.4 17 1027-1043 249-265 (423)
150 COG0444 DppD ABC-type dipeptid 91.5 0.12 2.6E-06 60.7 2.7 28 148-175 29-56 (316)
151 PF12325 TMF_TATA_bd: TATA ele 91.4 5.3 0.00011 40.9 13.9 46 971-1016 64-109 (120)
152 PF10473 CENP-F_leu_zip: Leuci 91.3 21 0.00046 37.5 19.3 14 921-934 22-35 (140)
153 PF10186 Atg14: UV radiation r 91.3 11 0.00023 44.6 19.2 73 969-1041 71-143 (302)
154 KOG0964 Structural maintenance 91.3 19 0.00041 47.7 21.6 65 979-1043 311-375 (1200)
155 KOG0963 Transcription factor/C 91.2 54 0.0012 42.0 28.8 19 965-983 289-307 (629)
156 KOG0979 Structural maintenance 91.1 39 0.00085 45.3 24.5 11 1330-1340 851-861 (1072)
157 KOG4360 Uncharacterized coiled 91.1 16 0.00034 45.2 19.6 78 967-1044 225-302 (596)
158 TIGR00150 HI0065_YjeE ATPase, 91.1 0.33 7.2E-06 50.5 5.3 28 148-175 20-47 (133)
159 PF00004 AAA: ATPase family as 91.0 0.15 3.3E-06 51.9 2.7 23 153-175 1-23 (132)
160 KOG0982 Centrosomal protein Nu 90.9 45 0.00098 40.6 23.6 24 1022-1045 408-431 (502)
161 PF05667 DUF812: Protein of un 90.9 33 0.00071 44.7 23.8 114 924-1043 409-524 (594)
162 PF07111 HCR: Alpha helical co 90.8 39 0.00084 43.8 23.3 26 1015-1040 240-265 (739)
163 PRK08472 fliI flagellum-specif 90.7 1.1 2.3E-05 55.8 10.0 41 134-174 141-181 (434)
164 KOG4360 Uncharacterized coiled 90.7 10 0.00022 46.7 17.7 84 968-1051 219-302 (596)
165 cd01131 PilT Pilus retraction 90.7 0.18 3.8E-06 56.3 3.1 25 152-176 3-27 (198)
166 KOG2129 Uncharacterized conser 90.7 38 0.00082 40.9 21.6 11 827-837 84-94 (552)
167 PRK06696 uridine kinase; Valid 90.7 0.31 6.6E-06 55.4 5.0 40 135-176 9-48 (223)
168 PRK00300 gmk guanylate kinase; 90.7 0.18 3.9E-06 56.2 3.1 26 149-174 4-29 (205)
169 PRK13833 conjugal transfer pro 90.6 0.28 6E-06 58.7 4.7 34 141-176 137-170 (323)
170 PRK05480 uridine/cytidine kina 90.6 0.22 4.7E-06 55.9 3.7 27 148-174 4-30 (209)
171 cd00820 PEPCK_HprK Phosphoenol 90.4 0.21 4.6E-06 49.9 3.0 24 148-171 13-36 (107)
172 TIGR01843 type_I_hlyD type I s 90.4 21 0.00046 44.3 21.5 28 1014-1041 243-270 (423)
173 cd02023 UMPK Uridine monophosp 90.4 0.2 4.2E-06 55.7 3.1 22 153-174 2-23 (198)
174 COG0194 Gmk Guanylate kinase [ 90.3 0.19 4.2E-06 54.6 2.8 25 150-174 4-28 (191)
175 COG2433 Uncharacterized conser 90.3 4.3 9.4E-05 51.1 14.4 79 967-1045 428-509 (652)
176 cd01918 HprK_C HprK/P, the bif 90.3 0.22 4.7E-06 52.8 3.1 25 149-173 13-37 (149)
177 PF10168 Nup88: Nuclear pore c 90.3 29 0.00062 46.3 23.0 20 616-635 421-440 (717)
178 PF05483 SCP-1: Synaptonemal c 90.3 67 0.0015 41.4 24.9 176 870-1049 450-626 (786)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.2 26 0.00056 36.5 18.5 13 1010-1022 112-124 (132)
180 KOG0946 ER-Golgi vesicle-tethe 90.2 52 0.0011 43.1 23.7 28 548-575 389-416 (970)
181 KOG0946 ER-Golgi vesicle-tethe 90.1 31 0.00066 45.1 21.6 22 354-375 142-163 (970)
182 PF04111 APG6: Autophagy prote 90.1 2.5 5.4E-05 50.6 12.1 74 972-1045 61-134 (314)
183 cd01129 PulE-GspE PulE/GspE Th 90.0 0.33 7.2E-06 56.6 4.7 34 142-176 73-106 (264)
184 PF00485 PRK: Phosphoribulokin 90.0 0.21 4.5E-06 55.4 2.8 26 153-178 2-27 (194)
185 PF04849 HAP1_N: HAP1 N-termin 89.9 21 0.00045 42.2 18.9 28 1017-1044 276-303 (306)
186 PRK08972 fliI flagellum-specif 89.9 0.5 1.1E-05 58.4 6.2 41 133-173 145-185 (444)
187 smart00382 AAA ATPases associa 89.8 0.22 4.8E-06 50.3 2.7 28 150-177 2-29 (148)
188 PF15254 CCDC14: Coiled-coil d 89.8 28 0.00062 45.2 21.1 21 1022-1042 534-554 (861)
189 PRK04778 septation ring format 89.7 34 0.00074 44.6 23.0 12 707-718 59-70 (569)
190 PF08826 DMPK_coil: DMPK coile 89.7 4 8.6E-05 36.6 9.9 50 989-1038 11-60 (61)
191 KOG1103 Predicted coiled-coil 89.6 46 0.00099 39.1 20.7 33 1012-1044 247-279 (561)
192 TIGR00235 udk uridine kinase. 89.5 0.29 6.2E-06 54.9 3.5 28 148-175 4-31 (207)
193 PF15619 Lebercilin: Ciliary p 89.4 40 0.00086 37.6 26.0 63 977-1039 120-186 (194)
194 KOG0612 Rho-associated, coiled 89.4 1E+02 0.0023 42.4 31.9 17 1322-1338 1024-1040(1317)
195 PRK12402 replication factor C 89.4 0.48 1E-05 57.0 5.6 56 118-175 6-61 (337)
196 COG1660 Predicted P-loop-conta 89.4 0.22 4.9E-06 56.4 2.5 19 152-170 3-21 (286)
197 PRK08233 hypothetical protein; 89.4 0.23 4.9E-06 54.0 2.5 25 151-175 4-28 (182)
198 PTZ00121 MAEBL; Provisional 89.4 1.1E+02 0.0024 42.7 35.7 32 67-98 163-194 (2084)
199 PF01583 APS_kinase: Adenylyls 89.4 0.37 7.9E-06 51.5 3.9 29 150-178 2-30 (156)
200 PF10234 Cluap1: Clusterin-ass 89.2 13 0.00028 43.2 16.4 68 968-1035 169-236 (267)
201 TIGR02173 cyt_kin_arch cytidyl 89.2 0.26 5.6E-06 53.0 2.8 24 152-175 2-25 (171)
202 PF10481 CENP-F_N: Cenp-F N-te 89.2 39 0.00085 38.8 19.4 28 1017-1044 162-189 (307)
203 PTZ00301 uridine kinase; Provi 89.2 0.28 6.1E-06 55.2 3.2 23 153-175 6-28 (210)
204 cd02020 CMPK Cytidine monophos 89.2 0.29 6.3E-06 51.1 3.0 23 153-175 2-24 (147)
205 PF14915 CCDC144C: CCDC144C pr 89.0 53 0.0011 38.5 29.0 80 969-1048 138-238 (305)
206 COG4026 Uncharacterized protei 89.0 4.1 8.9E-05 44.8 11.4 8 976-983 157-164 (290)
207 cd02025 PanK Pantothenate kina 89.0 0.3 6.4E-06 55.4 3.1 24 153-176 2-25 (220)
208 TIGR03420 DnaA_homol_Hda DnaA 88.9 0.61 1.3E-05 52.7 5.7 37 140-176 28-64 (226)
209 PF10186 Atg14: UV radiation r 88.8 14 0.00031 43.6 17.4 76 968-1043 63-138 (302)
210 PRK10884 SH3 domain-containing 88.8 5.4 0.00012 44.8 12.7 12 922-933 99-110 (206)
211 PRK14961 DNA polymerase III su 88.8 0.65 1.4E-05 56.8 6.1 57 117-175 6-63 (363)
212 COG3074 Uncharacterized protei 88.8 3.3 7.1E-05 37.3 8.6 53 994-1046 9-61 (79)
213 PRK07261 topology modulation p 88.7 0.33 7.2E-06 52.8 3.2 23 152-174 2-24 (171)
214 PRK05541 adenylylsulfate kinas 88.7 0.34 7.3E-06 52.7 3.2 29 148-176 5-33 (176)
215 cd02028 UMPK_like Uridine mono 88.7 0.33 7.2E-06 53.2 3.1 24 153-176 2-25 (179)
216 PF04091 Sec15: Exocyst comple 88.5 1.5 3.3E-05 52.4 8.8 130 1313-1444 177-310 (311)
217 cd01130 VirB11-like_ATPase Typ 88.5 0.32 6.9E-06 53.6 2.9 26 150-175 25-50 (186)
218 PRK06762 hypothetical protein; 88.4 0.35 7.6E-06 52.0 3.1 24 151-174 3-26 (166)
219 PF10498 IFT57: Intra-flagella 88.4 8.8 0.00019 46.7 15.1 16 889-904 187-202 (359)
220 PF03668 ATP_bind_2: P-loop AT 88.4 0.3 6.6E-06 56.7 2.7 20 151-170 2-21 (284)
221 PF07111 HCR: Alpha helical co 88.4 81 0.0018 41.0 23.5 14 1175-1188 439-452 (739)
222 PRK06547 hypothetical protein; 88.2 0.66 1.4E-05 50.6 5.1 29 146-174 11-39 (172)
223 PF09789 DUF2353: Uncharacteri 88.1 39 0.00086 40.3 19.7 84 964-1047 75-170 (319)
224 TIGR00554 panK_bact pantothena 88.1 0.91 2E-05 53.6 6.5 30 148-177 60-89 (290)
225 PF08614 ATG16: Autophagy prot 88.1 5.6 0.00012 44.3 12.4 71 972-1042 113-183 (194)
226 PF05729 NACHT: NACHT domain 88.1 0.4 8.7E-06 50.8 3.3 27 152-178 2-28 (166)
227 cd00227 CPT Chloramphenicol (C 88.1 0.42 9.2E-06 52.0 3.6 25 150-174 2-26 (175)
228 PF07724 AAA_2: AAA domain (Cd 88.1 0.42 9E-06 52.1 3.5 24 152-175 5-28 (171)
229 PRK08118 topology modulation p 88.1 0.39 8.6E-06 52.0 3.3 25 151-175 2-26 (167)
230 COG1382 GimC Prefoldin, chaper 88.0 13 0.00029 37.7 13.6 40 1005-1044 72-111 (119)
231 KOG0977 Nuclear envelope prote 88.0 90 0.002 39.9 32.4 23 739-761 49-71 (546)
232 PRK14737 gmk guanylate kinase; 88.0 0.34 7.5E-06 53.4 2.7 25 150-174 4-28 (186)
233 PF12846 AAA_10: AAA-like doma 88.0 0.42 9.1E-06 56.1 3.7 29 150-178 1-29 (304)
234 PF15070 GOLGA2L5: Putative go 87.9 1E+02 0.0022 40.5 31.1 11 1480-1490 594-604 (617)
235 PF00910 RNA_helicase: RNA hel 87.8 0.39 8.4E-06 48.0 2.8 25 153-177 1-25 (107)
236 PRK00131 aroK shikimate kinase 87.8 0.46 1E-05 51.1 3.6 27 149-175 3-29 (175)
237 PF13870 DUF4201: Domain of un 87.7 47 0.001 36.4 21.5 19 921-939 47-65 (177)
238 PF04437 RINT1_TIP1: RINT-1 / 87.7 13 0.00029 47.5 17.1 124 1313-1442 353-491 (494)
239 TIGR01420 pilT_fam pilus retra 87.6 0.38 8.1E-06 58.4 3.0 26 150-175 122-147 (343)
240 cd00071 GMPK Guanosine monopho 87.6 0.34 7.3E-06 50.7 2.3 23 153-175 2-24 (137)
241 KOG2891 Surface glycoprotein [ 87.5 58 0.0013 37.2 20.0 28 649-676 107-138 (445)
242 PRK10078 ribose 1,5-bisphospho 87.5 0.35 7.5E-06 53.3 2.4 25 150-174 2-26 (186)
243 PRK06315 type III secretion sy 87.5 0.8 1.7E-05 56.9 5.8 35 140-174 154-188 (442)
244 COG1340 Uncharacterized archae 87.5 67 0.0015 37.8 30.2 76 969-1044 180-255 (294)
245 TIGR01005 eps_transp_fam exopo 87.5 56 0.0012 44.2 23.7 22 1420-1441 655-676 (754)
246 TIGR01005 eps_transp_fam exopo 87.4 1.2E+02 0.0027 40.9 28.1 12 691-702 85-96 (754)
247 KOG1962 B-cell receptor-associ 87.4 4.1 8.9E-05 45.5 10.5 27 1019-1045 181-207 (216)
248 PRK07721 fliI flagellum-specif 87.4 1.9 4.1E-05 53.8 9.0 41 134-174 142-182 (438)
249 PRK09099 type III secretion sy 87.4 1 2.3E-05 56.0 6.7 35 140-174 153-187 (441)
250 PRK13851 type IV secretion sys 87.4 0.47 1E-05 57.4 3.6 26 150-175 162-187 (344)
251 TIGR02782 TrbB_P P-type conjug 87.4 0.43 9.3E-06 56.7 3.2 27 150-176 132-158 (299)
252 KOG0976 Rho/Rac1-interacting s 87.3 1.1E+02 0.0024 40.1 30.2 8 1381-1388 954-961 (1265)
253 TIGR01313 therm_gnt_kin carboh 87.1 0.35 7.7E-06 51.8 2.2 23 153-175 1-23 (163)
254 TIGR02928 orc1/cdc6 family rep 87.1 0.64 1.4E-05 56.7 4.7 35 142-176 32-66 (365)
255 COG4172 ABC-type uncharacteriz 87.1 0.37 8.1E-06 57.7 2.4 28 150-177 36-63 (534)
256 PRK10869 recombination and rep 87.0 97 0.0021 40.3 24.3 8 708-715 101-108 (553)
257 PLN03188 kinesin-12 family pro 86.9 1.5E+02 0.0032 41.4 26.0 68 966-1033 1171-1241(1320)
258 PRK13900 type IV secretion sys 86.9 0.63 1.4E-05 56.1 4.3 25 151-175 161-185 (332)
259 PRK00889 adenylylsulfate kinas 86.9 0.66 1.4E-05 50.4 4.2 29 149-177 3-31 (175)
260 cd02024 NRK1 Nicotinamide ribo 86.9 0.44 9.4E-06 52.7 2.7 22 153-174 2-23 (187)
261 PLN03025 replication factor C 86.9 0.8 1.7E-05 55.0 5.2 56 118-175 4-59 (319)
262 TIGR02524 dot_icm_DotB Dot/Icm 86.8 0.46 9.9E-06 57.8 3.1 28 149-176 133-160 (358)
263 PRK12608 transcription termina 86.7 0.56 1.2E-05 56.8 3.8 42 135-176 118-159 (380)
264 TIGR03263 guanyl_kin guanylate 86.7 0.39 8.4E-06 52.3 2.2 25 151-175 2-26 (180)
265 cd01120 RecA-like_NTPases RecA 86.5 0.59 1.3E-05 49.2 3.5 25 153-177 2-26 (165)
266 PRK14738 gmk guanylate kinase; 86.5 0.52 1.1E-05 52.9 3.1 26 148-173 11-36 (206)
267 cd02027 APSK Adenosine 5'-phos 86.3 0.57 1.2E-05 49.7 3.1 24 153-176 2-25 (149)
268 PRK14956 DNA polymerase III su 86.2 0.86 1.9E-05 57.1 5.1 55 118-176 9-66 (484)
269 PRK08084 DNA replication initi 86.1 1.2 2.5E-05 51.2 5.8 40 137-176 32-71 (235)
270 COG4608 AppF ABC-type oligopep 86.1 0.5 1.1E-05 54.4 2.8 32 148-179 37-68 (268)
271 PF13245 AAA_19: Part of AAA d 85.9 1 2.2E-05 42.3 4.2 28 149-176 9-36 (76)
272 TIGR02525 plasmid_TraJ plasmid 85.9 0.55 1.2E-05 57.3 3.2 27 150-176 149-175 (372)
273 PRK10751 molybdopterin-guanine 85.9 0.62 1.3E-05 50.7 3.2 26 152-177 8-33 (173)
274 PRK00440 rfc replication facto 85.8 1 2.2E-05 53.7 5.3 55 119-175 9-63 (319)
275 PF09728 Taxilin: Myosin-like 85.7 89 0.0019 37.5 30.6 31 1015-1045 235-265 (309)
276 cd00464 SK Shikimate kinase (S 85.6 0.6 1.3E-05 49.2 2.9 24 152-175 1-24 (154)
277 PRK12377 putative replication 85.5 1.3 2.8E-05 51.1 5.8 45 131-177 84-128 (248)
278 KOG0963 Transcription factor/C 85.4 1.2E+02 0.0027 38.9 28.5 11 1035-1045 348-358 (629)
279 PRK06217 hypothetical protein; 85.4 0.58 1.2E-05 51.4 2.8 24 152-175 3-26 (183)
280 KOG0978 E3 ubiquitin ligase in 85.4 1.4E+02 0.003 39.4 37.6 60 987-1046 557-616 (698)
281 COG1102 Cmk Cytidylate kinase 85.4 0.66 1.4E-05 49.3 3.0 24 153-176 3-26 (179)
282 TIGR02902 spore_lonB ATP-depen 85.4 0.96 2.1E-05 58.1 5.1 31 145-175 81-111 (531)
283 KOG1937 Uncharacterized conser 85.4 1E+02 0.0022 38.0 23.2 33 1009-1041 388-420 (521)
284 COG0497 RecN ATPase involved i 85.4 1.2E+02 0.0026 39.1 22.9 10 707-716 99-108 (557)
285 COG4942 Membrane-bound metallo 85.3 1.1E+02 0.0023 38.0 30.3 22 1009-1030 223-244 (420)
286 PRK00411 cdc6 cell division co 85.3 0.96 2.1E-05 55.8 4.9 33 144-176 49-81 (394)
287 PRK06002 fliI flagellum-specif 85.2 0.77 1.7E-05 57.0 4.0 33 7-40 46-78 (450)
288 COG5185 HEC1 Protein involved 85.2 1.1E+02 0.0023 38.0 27.0 10 599-608 79-88 (622)
289 PF13671 AAA_33: AAA domain; P 85.2 0.5 1.1E-05 49.1 2.1 23 153-175 2-24 (143)
290 PF00437 T2SE: Type II/IV secr 85.2 0.52 1.1E-05 55.0 2.5 28 149-176 126-153 (270)
291 PF10168 Nup88: Nuclear pore c 85.2 92 0.002 41.7 23.1 62 880-941 603-664 (717)
292 PRK06936 type III secretion sy 85.2 1.6 3.4E-05 54.3 6.6 41 134-174 146-186 (439)
293 COG0572 Udk Uridine kinase [Nu 85.1 0.66 1.4E-05 52.1 3.0 24 152-175 10-33 (218)
294 PTZ00112 origin recognition co 85.1 1.6 3.5E-05 57.5 6.9 45 132-176 763-807 (1164)
295 KOG1962 B-cell receptor-associ 85.1 4.4 9.5E-05 45.3 9.2 35 999-1033 175-209 (216)
296 PRK06645 DNA polymerase III su 85.1 1.1 2.3E-05 57.1 5.2 56 119-177 13-70 (507)
297 PF00769 ERM: Ezrin/radixin/mo 85.1 30 0.00064 40.1 16.5 24 1013-1036 85-108 (246)
298 KOG0804 Cytoplasmic Zn-finger 85.0 33 0.00071 42.1 16.9 19 1024-1042 428-446 (493)
299 PRK11281 hypothetical protein; 84.6 64 0.0014 45.1 21.8 18 1028-1045 289-306 (1113)
300 PRK03846 adenylylsulfate kinas 84.6 1.1 2.4E-05 49.8 4.6 31 147-177 21-51 (198)
301 PHA02544 44 clamp loader, smal 84.6 1.1 2.3E-05 53.7 4.8 53 118-174 12-67 (316)
302 PF12325 TMF_TATA_bd: TATA ele 84.6 30 0.00066 35.5 14.3 38 1007-1044 72-109 (120)
303 PRK08903 DnaA regulatory inact 84.6 1.6 3.6E-05 49.4 6.1 30 148-177 40-69 (227)
304 PF03205 MobB: Molybdopterin g 84.5 0.79 1.7E-05 48.2 3.2 27 152-178 2-28 (140)
305 KOG0243 Kinesin-like protein [ 84.5 47 0.001 45.2 19.6 20 307-326 99-118 (1041)
306 PF03266 NTPase_1: NTPase; In 84.4 0.76 1.7E-05 49.9 3.1 24 153-176 2-25 (168)
307 COG1125 OpuBA ABC-type proline 84.4 0.53 1.1E-05 53.5 1.8 26 151-176 28-53 (309)
308 COG1123 ATPase components of v 84.4 0.57 1.2E-05 59.0 2.3 30 148-177 33-62 (539)
309 PRK14964 DNA polymerase III su 84.4 1.2 2.5E-05 56.4 5.1 57 118-177 4-62 (491)
310 COG1340 Uncharacterized archae 84.4 94 0.002 36.7 29.9 34 969-1002 159-192 (294)
311 PRK05688 fliI flagellum-specif 84.3 1.4 3.1E-05 54.8 5.7 41 133-173 151-191 (451)
312 PF14197 Cep57_CLD_2: Centroso 84.3 11 0.00023 34.9 9.8 61 973-1033 3-63 (69)
313 PRK05896 DNA polymerase III su 84.2 1.4 2.9E-05 56.8 5.6 59 117-177 6-65 (605)
314 KOG1003 Actin filament-coating 84.2 72 0.0016 35.2 23.7 72 972-1043 113-184 (205)
315 TIGR00634 recN DNA repair prot 84.2 82 0.0018 41.1 22.0 9 708-716 105-113 (563)
316 PF10146 zf-C4H2: Zinc finger- 84.2 19 0.0004 41.2 14.0 35 1012-1046 69-103 (230)
317 TIGR03017 EpsF chain length de 84.2 1.1E+02 0.0024 38.4 22.7 15 887-901 174-188 (444)
318 PF10212 TTKRSYEDQ: Predicted 84.1 1.2E+02 0.0025 38.6 21.6 12 888-899 306-317 (518)
319 cd02021 GntK Gluconate kinase 83.9 0.72 1.6E-05 48.6 2.6 22 153-174 2-23 (150)
320 PF10146 zf-C4H2: Zinc finger- 83.9 24 0.00053 40.3 14.8 66 967-1032 38-103 (230)
321 PRK15422 septal ring assembly 83.9 7.5 0.00016 36.3 8.6 50 997-1046 12-61 (79)
322 PF10174 Cast: RIM-binding pro 83.8 1.8E+02 0.0038 39.3 32.9 15 602-616 152-166 (775)
323 COG0563 Adk Adenylate kinase a 83.7 0.83 1.8E-05 50.1 3.0 23 152-174 2-24 (178)
324 PRK13342 recombination factor 83.7 1.3 2.7E-05 55.3 5.0 43 131-174 18-60 (413)
325 PRK14732 coaE dephospho-CoA ki 83.7 0.98 2.1E-05 50.3 3.6 47 153-204 2-53 (196)
326 PF09730 BicD: Microtubule-ass 83.7 1.5E+02 0.0033 39.4 23.5 56 968-1023 97-155 (717)
327 TIGR02546 III_secr_ATP type II 83.6 1.8 3.9E-05 53.9 6.3 37 138-174 133-169 (422)
328 PRK07667 uridine kinase; Provi 83.6 0.94 2E-05 50.2 3.5 26 151-176 18-43 (193)
329 PF15397 DUF4618: Domain of un 83.5 95 0.0021 36.1 25.1 34 1016-1049 185-218 (258)
330 cd02029 PRK_like Phosphoribulo 83.5 0.94 2E-05 52.5 3.5 24 153-176 2-25 (277)
331 PRK05057 aroK shikimate kinase 83.5 0.92 2E-05 49.4 3.3 25 150-174 4-28 (172)
332 PRK13764 ATPase; Provisional 83.5 0.91 2E-05 58.5 3.7 27 150-176 257-283 (602)
333 PF10174 Cast: RIM-binding pro 83.5 1.8E+02 0.0039 39.2 33.2 18 917-934 393-410 (775)
334 PRK09825 idnK D-gluconate kina 83.5 0.94 2E-05 49.5 3.4 27 150-176 3-29 (176)
335 TIGR01360 aden_kin_iso1 adenyl 83.4 0.87 1.9E-05 49.7 3.1 24 151-174 4-27 (188)
336 PRK04182 cytidylate kinase; Pr 83.4 0.79 1.7E-05 49.6 2.7 23 152-174 2-24 (180)
337 TIGR02533 type_II_gspE general 83.3 1 2.3E-05 57.0 4.1 34 141-175 234-267 (486)
338 KOG0249 LAR-interacting protei 83.3 41 0.00088 43.4 17.2 19 879-897 134-152 (916)
339 COG1124 DppF ABC-type dipeptid 83.2 0.91 2E-05 51.4 3.1 29 148-176 31-59 (252)
340 TIGR02903 spore_lon_C ATP-depe 83.1 1.7 3.7E-05 56.8 6.0 36 142-177 167-202 (615)
341 KOG0018 Structural maintenance 83.0 2E+02 0.0043 39.4 29.4 231 816-1046 199-459 (1141)
342 TIGR01026 fliI_yscN ATPase Fli 83.0 2.1 4.6E-05 53.5 6.5 41 134-174 147-187 (440)
343 cd03115 SRP The signal recogni 83.0 1.2 2.5E-05 48.3 3.8 27 152-178 2-28 (173)
344 PRK04040 adenylate kinase; Pro 82.9 0.89 1.9E-05 50.3 2.9 25 151-175 3-27 (188)
345 PF09755 DUF2046: Uncharacteri 82.9 1.1E+02 0.0024 36.4 29.2 197 848-1049 24-247 (310)
346 PHA00729 NTP-binding motif con 82.8 1.7 3.6E-05 49.4 5.0 29 147-175 14-42 (226)
347 PF03215 Rad17: Rad17 cell cyc 82.8 1.2 2.6E-05 56.8 4.3 59 117-175 9-70 (519)
348 PRK14955 DNA polymerase III su 82.7 1.7 3.8E-05 53.8 5.7 56 119-176 8-64 (397)
349 TIGR03497 FliI_clade2 flagella 82.7 2.5 5.4E-05 52.4 6.9 36 139-174 126-161 (413)
350 PRK05922 type III secretion sy 82.7 1.6 3.4E-05 54.2 5.2 41 134-174 141-181 (434)
351 COG2433 Uncharacterized conser 82.6 44 0.00095 42.6 17.2 28 968-995 436-463 (652)
352 KOG4809 Rab6 GTPase-interactin 82.6 1.5E+02 0.0032 37.6 21.4 23 917-939 339-361 (654)
353 PRK10929 putative mechanosensi 82.6 74 0.0016 44.4 21.1 13 1031-1043 272-284 (1109)
354 PRK05342 clpX ATP-dependent pr 82.3 2.3 4.9E-05 52.9 6.4 63 112-174 59-132 (412)
355 PRK13894 conjugal transfer ATP 82.3 1 2.2E-05 54.0 3.3 26 150-175 148-173 (319)
356 PF13851 GAS: Growth-arrest sp 82.3 92 0.002 35.0 24.9 31 969-999 101-131 (201)
357 PRK04778 septation ring format 82.3 1.7E+02 0.0038 38.2 37.6 34 917-950 276-309 (569)
358 PF07728 AAA_5: AAA domain (dy 82.2 0.97 2.1E-05 46.9 2.8 22 153-174 2-23 (139)
359 KOG0804 Cytoplasmic Zn-finger 82.2 56 0.0012 40.2 17.3 13 1022-1034 433-445 (493)
360 COG4172 ABC-type uncharacteriz 82.1 0.83 1.8E-05 54.9 2.4 30 148-177 311-340 (534)
361 PF07475 Hpr_kinase_C: HPr Ser 82.1 0.96 2.1E-05 48.8 2.6 23 150-172 18-40 (171)
362 PRK06761 hypothetical protein; 82.0 0.94 2E-05 53.2 2.8 26 151-176 4-29 (282)
363 PF13555 AAA_29: P-loop contai 81.8 1.5 3.3E-05 39.4 3.3 23 152-174 25-47 (62)
364 COG4477 EzrA Negative regulato 81.8 1.2E+02 0.0026 38.4 20.2 29 920-948 278-306 (570)
365 PRK14957 DNA polymerase III su 81.7 1.9 4.1E-05 55.2 5.6 55 118-176 7-64 (546)
366 PRK15453 phosphoribulokinase; 81.7 1.2 2.5E-05 52.1 3.4 26 150-175 5-30 (290)
367 smart00333 TUDOR Tudor domain. 81.7 4.2 9.2E-05 35.4 6.2 51 7-57 2-54 (57)
368 COG0529 CysC Adenylylsulfate k 81.7 2 4.3E-05 46.5 4.7 44 135-179 9-52 (197)
369 cd03293 ABC_NrtD_SsuB_transpor 81.6 1.1 2.3E-05 50.7 3.0 27 148-174 28-54 (220)
370 TIGR02868 CydC thiol reductant 81.6 0.75 1.6E-05 59.2 2.0 32 148-179 359-390 (529)
371 TIGR00176 mobB molybdopterin-g 81.6 1.3 2.8E-05 47.4 3.5 26 153-178 2-27 (155)
372 PRK14527 adenylate kinase; Pro 81.6 1.2 2.6E-05 49.2 3.3 28 149-176 5-32 (191)
373 TIGR00455 apsK adenylylsulfate 81.6 1.2 2.5E-05 48.9 3.2 29 148-176 16-44 (184)
374 COG2884 FtsE Predicted ATPase 81.5 1.1 2.3E-05 49.1 2.7 25 150-174 28-52 (223)
375 PRK00106 hypothetical protein; 81.5 68 0.0015 41.3 18.9 15 1449-1463 446-461 (535)
376 TIGR02673 FtsE cell division A 81.5 1.1 2.5E-05 50.2 3.2 27 148-174 26-52 (214)
377 PRK15093 antimicrobial peptide 81.5 1.1 2.4E-05 54.0 3.3 27 148-174 31-57 (330)
378 TIGR00960 3a0501s02 Type II (G 81.4 1.1 2.5E-05 50.3 3.1 27 148-174 27-53 (216)
379 PRK14974 cell division protein 81.4 2.4 5.2E-05 51.1 6.0 31 148-178 138-168 (336)
380 PRK05416 glmZ(sRNA)-inactivati 81.4 0.99 2.2E-05 53.3 2.7 21 150-170 6-26 (288)
381 PRK08356 hypothetical protein; 81.3 0.99 2.1E-05 50.1 2.5 22 151-172 6-27 (195)
382 TIGR01166 cbiO cobalt transpor 81.2 1.2 2.6E-05 49.0 3.2 26 148-173 16-41 (190)
383 PRK11308 dppF dipeptide transp 81.1 1.2 2.5E-05 53.8 3.2 27 148-174 39-65 (327)
384 TIGR03496 FliI_clade1 flagella 81.1 2.3 4.9E-05 52.7 5.8 37 138-174 125-161 (411)
385 TIGR03689 pup_AAA proteasome A 81.1 5.2 0.00011 50.9 9.0 27 149-175 215-241 (512)
386 PRK12704 phosphodiesterase; Pr 81.0 73 0.0016 41.0 19.2 10 1402-1411 417-426 (520)
387 PRK08727 hypothetical protein; 81.0 1.9 4E-05 49.4 4.7 31 147-177 38-68 (233)
388 TIGR02788 VirB11 P-type DNA tr 81.0 0.95 2.1E-05 54.1 2.4 26 150-175 144-169 (308)
389 PRK15177 Vi polysaccharide exp 80.9 1.2 2.6E-05 50.1 3.2 28 148-175 11-38 (213)
390 TIGR03499 FlhF flagellar biosy 80.9 1.4 3.1E-05 51.9 3.9 45 133-177 169-221 (282)
391 cd03260 ABC_PstB_phosphate_tra 80.9 1.1 2.5E-05 50.7 2.9 27 148-174 24-50 (227)
392 cd02034 CooC The accessory pro 80.9 1.6 3.4E-05 44.4 3.6 26 153-178 2-27 (116)
393 cd03225 ABC_cobalt_CbiO_domain 80.9 1.3 2.7E-05 49.7 3.2 27 148-174 25-51 (211)
394 PF03193 DUF258: Protein of un 80.7 1.4 3E-05 47.5 3.3 25 149-173 34-58 (161)
395 KOG0924 mRNA splicing factor A 80.7 1.4 3E-05 55.7 3.6 40 133-178 357-396 (1042)
396 KOG0056 Heavy metal exporter H 80.7 1.6 3.5E-05 53.4 4.1 40 149-188 563-602 (790)
397 cd03259 ABC_Carb_Solutes_like 80.7 1.3 2.8E-05 49.7 3.2 27 148-174 24-50 (213)
398 PF00005 ABC_tran: ABC transpo 80.6 1.1 2.5E-05 46.2 2.6 28 148-175 9-36 (137)
399 PRK09112 DNA polymerase III su 80.6 2.1 4.6E-05 52.0 5.2 40 137-176 31-71 (351)
400 PF02367 UPF0079: Uncharacteri 80.6 1.2 2.6E-05 45.7 2.7 28 148-175 13-40 (123)
401 PRK15079 oligopeptide ABC tran 80.6 1.2 2.6E-05 53.7 3.2 28 148-175 45-72 (331)
402 PRK10416 signal recognition pa 80.5 1.6 3.5E-05 52.3 4.1 31 148-178 112-142 (318)
403 cd01124 KaiC KaiC is a circadi 80.5 1.4 3.1E-05 48.0 3.4 27 152-178 1-27 (187)
404 PF03962 Mnd1: Mnd1 family; I 80.5 18 0.0004 40.0 12.0 78 969-1047 70-151 (188)
405 PRK00698 tmk thymidylate kinas 80.4 1.4 3.1E-05 48.8 3.5 28 150-177 3-30 (205)
406 cd03255 ABC_MJ0796_Lo1CDE_FtsE 80.4 1.3 2.8E-05 49.8 3.2 27 148-174 28-54 (218)
407 PRK14962 DNA polymerase III su 80.4 2.3 5.1E-05 53.7 5.7 53 119-175 6-61 (472)
408 TIGR00064 ftsY signal recognit 80.4 2.9 6.4E-05 49.0 6.1 47 132-178 45-100 (272)
409 PRK04220 2-phosphoglycerate ki 80.4 2.1 4.5E-05 50.6 4.8 27 148-174 90-116 (301)
410 PRK09473 oppD oligopeptide tra 80.4 1.2 2.6E-05 53.8 3.0 27 148-174 40-66 (330)
411 PRK14959 DNA polymerase III su 80.4 2 4.4E-05 55.5 5.1 55 118-176 7-64 (624)
412 TIGR03608 L_ocin_972_ABC putat 80.4 1.3 2.8E-05 49.3 3.1 27 148-174 22-48 (206)
413 PRK06893 DNA replication initi 80.3 2.7 5.8E-05 48.0 5.7 40 137-177 27-66 (229)
414 TIGR03319 YmdA_YtgF conserved 80.3 97 0.0021 39.9 19.9 128 903-1039 20-147 (514)
415 TIGR02881 spore_V_K stage V sp 80.2 1.4 3.1E-05 51.2 3.5 31 148-178 40-70 (261)
416 PF05911 DUF869: Plant protein 80.2 2.3E+02 0.005 38.2 25.9 83 965-1047 117-206 (769)
417 PRK14528 adenylate kinase; Pro 80.2 1.4 3.1E-05 48.5 3.3 24 151-174 2-25 (186)
418 COG1493 HprK Serine kinase of 80.2 1.2 2.6E-05 51.8 2.7 24 150-173 145-168 (308)
419 PRK14969 DNA polymerase III su 80.2 2.2 4.7E-05 54.8 5.4 55 118-176 7-64 (527)
420 cd03229 ABC_Class3 This class 80.1 1.4 3.1E-05 48.0 3.2 27 148-174 24-50 (178)
421 cd03296 ABC_CysA_sulfate_impor 80.1 1.4 2.9E-05 50.6 3.2 27 148-174 26-52 (239)
422 PRK14963 DNA polymerase III su 80.1 1.9 4E-05 55.0 4.7 55 119-176 6-62 (504)
423 PRK04195 replication factor C 80.0 1.9 4.1E-05 54.9 4.7 26 149-174 38-63 (482)
424 PF01576 Myosin_tail_1: Myosin 79.9 0.56 1.2E-05 63.4 0.0 28 881-908 36-63 (859)
425 PRK13768 GTPase; Provisional 79.9 1.5 3.3E-05 50.8 3.5 27 152-178 4-30 (253)
426 PF09738 DUF2051: Double stran 79.8 1.1E+02 0.0025 36.4 18.9 68 971-1038 101-168 (302)
427 cd03258 ABC_MetN_methionine_tr 79.8 1 2.2E-05 51.4 2.0 28 148-175 29-56 (233)
428 PRK09111 DNA polymerase III su 79.7 1.6 3.5E-05 56.6 4.1 58 118-177 15-73 (598)
429 PF00625 Guanylate_kin: Guanyl 79.7 1.5 3.3E-05 48.0 3.3 26 150-175 2-27 (183)
430 COG1123 ATPase components of v 79.7 1.3 2.9E-05 55.9 3.1 29 148-176 315-343 (539)
431 PRK01156 chromosome segregatio 79.7 2.6E+02 0.0057 38.6 37.9 23 1318-1340 732-754 (895)
432 PF00158 Sigma54_activat: Sigm 79.6 1.3 2.8E-05 48.1 2.7 25 148-172 20-44 (168)
433 PRK11022 dppD dipeptide transp 79.6 1.4 2.9E-05 53.2 3.1 28 148-175 31-58 (326)
434 TIGR02880 cbbX_cfxQ probable R 79.5 1.5 3.3E-05 51.8 3.4 28 152-179 60-87 (284)
435 cd01983 Fer4_NifH The Fer4_Nif 79.4 1.9 4.1E-05 40.9 3.5 25 153-177 2-26 (99)
436 cd03292 ABC_FtsE_transporter F 79.4 1.5 3.2E-05 49.2 3.2 27 148-174 25-51 (214)
437 TIGR01359 UMP_CMP_kin_fam UMP- 79.4 1.4 3.1E-05 48.0 2.9 23 153-175 2-24 (183)
438 cd03235 ABC_Metallic_Cations A 79.4 1.4 3E-05 49.5 2.9 27 148-174 23-49 (213)
439 cd03116 MobB Molybdenum is an 79.4 1.8 4E-05 46.5 3.7 28 151-178 2-29 (159)
440 KOG0995 Centromere-associated 79.3 1.9E+02 0.0042 36.9 33.5 25 795-819 265-289 (581)
441 KOG0243 Kinesin-like protein [ 79.3 1.7E+02 0.0037 40.1 21.9 9 708-716 357-365 (1041)
442 PF04665 Pox_A32: Poxvirus A32 79.3 1.4 3.1E-05 50.4 2.9 26 151-176 14-39 (241)
443 KOG4403 Cell surface glycoprot 79.2 72 0.0016 38.8 16.6 130 915-1050 241-380 (575)
444 PRK13341 recombination factor 79.2 2.3 5E-05 56.4 5.3 36 139-174 41-76 (725)
445 PRK05439 pantothenate kinase; 79.2 4.1 9E-05 48.6 6.9 31 147-177 83-113 (311)
446 COG4619 ABC-type uncharacteriz 79.2 1.4 3E-05 47.2 2.6 26 149-174 28-53 (223)
447 TIGR03007 pepcterm_ChnLen poly 79.1 2E+02 0.0043 36.8 26.1 7 709-715 42-48 (498)
448 TIGR00678 holB DNA polymerase 79.1 2.6 5.6E-05 46.4 4.9 36 141-176 4-40 (188)
449 COG2805 PilT Tfp pilus assembl 79.1 1.5 3.3E-05 51.0 3.1 75 88-176 70-151 (353)
450 COG0802 Predicted ATPase or ki 79.0 3.5 7.6E-05 43.6 5.5 30 147-176 22-51 (149)
451 PF00308 Bac_DnaA: Bacterial d 78.9 3 6.4E-05 47.4 5.4 41 137-177 19-61 (219)
452 PRK14950 DNA polymerase III su 78.9 2.7 5.7E-05 54.8 5.7 55 119-176 8-64 (585)
453 PRK10646 ADP-binding protein; 78.8 3.3 7.1E-05 44.2 5.3 26 150-175 28-53 (153)
454 PRK08116 hypothetical protein; 78.8 3.4 7.4E-05 48.4 6.0 47 131-177 94-141 (268)
455 COG2274 SunT ABC-type bacterio 78.7 1.1 2.4E-05 59.1 2.2 32 148-179 497-528 (709)
456 cd02026 PRK Phosphoribulokinas 78.7 1.5 3.2E-05 51.5 3.0 22 153-174 2-23 (273)
457 PF05622 HOOK: HOOK protein; 78.7 0.64 1.4E-05 61.9 0.0 10 404-413 7-16 (713)
458 COG4088 Predicted nucleotide k 78.6 2.1 4.7E-05 47.2 3.9 26 152-177 3-28 (261)
459 TIGR03864 PQQ_ABC_ATP ABC tran 78.6 1.6 3.5E-05 49.8 3.2 27 148-174 25-51 (236)
460 PLN02796 D-glycerate 3-kinase 78.5 1.5 3.3E-05 52.6 3.0 24 152-175 102-125 (347)
461 cd03223 ABCD_peroxisomal_ALDP 78.5 1.7 3.7E-05 46.9 3.2 27 148-174 25-51 (166)
462 PRK06921 hypothetical protein; 78.5 2.3 5E-05 49.7 4.5 29 149-177 116-144 (266)
463 cd03256 ABC_PhnC_transporter A 78.4 1.6 3.5E-05 49.9 3.2 27 148-174 25-51 (241)
464 PF10226 DUF2216: Uncharacteri 78.4 74 0.0016 34.9 15.0 32 1015-1046 106-137 (195)
465 PRK11176 lipid transporter ATP 78.4 1.3 2.8E-05 57.7 2.6 30 148-177 367-396 (582)
466 PRK11124 artP arginine transpo 78.4 1.7 3.6E-05 49.9 3.2 26 148-173 26-51 (242)
467 PRK14531 adenylate kinase; Pro 78.4 1.8 3.9E-05 47.5 3.4 25 151-175 3-27 (183)
468 PRK14958 DNA polymerase III su 78.4 2.9 6.4E-05 53.4 5.7 55 118-176 7-64 (509)
469 PF12774 AAA_6: Hydrolytic ATP 78.3 2.2 4.7E-05 48.8 4.1 41 136-176 17-58 (231)
470 TIGR02315 ABC_phnC phosphonate 78.3 1.7 3.6E-05 49.9 3.2 27 148-174 26-52 (243)
471 TIGR02338 gimC_beta prefoldin, 78.2 49 0.0011 33.4 13.3 35 1008-1042 72-106 (110)
472 PF10205 KLRAQ: Predicted coil 78.1 32 0.00069 34.1 11.2 66 969-1041 6-71 (102)
473 PRK08154 anaerobic benzoate ca 78.1 2.7 5.9E-05 50.2 5.1 47 128-174 107-157 (309)
474 cd03224 ABC_TM1139_LivF_branch 78.1 1.6 3.6E-05 49.1 3.1 26 148-173 24-49 (222)
475 cd03297 ABC_ModC_molybdenum_tr 78.1 1.6 3.5E-05 49.0 3.0 26 148-174 22-47 (214)
476 cd03268 ABC_BcrA_bacitracin_re 78.0 1.7 3.8E-05 48.5 3.2 27 148-174 24-50 (208)
477 cd03266 ABC_NatA_sodium_export 78.0 1.7 3.8E-05 48.8 3.2 26 148-173 29-54 (218)
478 PRK14970 DNA polymerase III su 78.0 3.6 7.8E-05 50.4 6.2 57 118-176 8-65 (367)
479 TIGR03574 selen_PSTK L-seryl-t 78.0 1.7 3.6E-05 50.2 3.1 24 153-176 2-25 (249)
480 PRK06305 DNA polymerase III su 77.9 3.2 6.9E-05 52.3 5.8 58 118-177 8-66 (451)
481 smart00072 GuKc Guanylate kina 77.8 1.6 3.5E-05 48.0 2.7 23 152-174 4-26 (184)
482 PRK10436 hypothetical protein; 77.7 1.6 3.4E-05 55.0 3.0 27 149-175 217-243 (462)
483 PRK00023 cmk cytidylate kinase 77.7 1.8 3.8E-05 49.4 3.1 26 150-175 4-29 (225)
484 cd03265 ABC_DrrA DrrA is the A 77.7 1.8 3.9E-05 48.8 3.2 25 148-172 24-48 (220)
485 TIGR01184 ntrCD nitrate transp 77.7 1.8 3.9E-05 49.4 3.2 27 148-174 9-35 (230)
486 PRK13539 cytochrome c biogenes 77.6 1.8 4E-05 48.4 3.2 26 148-173 26-51 (207)
487 PF09787 Golgin_A5: Golgin sub 77.6 1.3E+02 0.0028 38.8 20.1 170 878-1047 117-311 (511)
488 TIGR00972 3a0107s01c2 phosphat 77.6 1.8 3.9E-05 49.9 3.2 27 148-174 25-51 (247)
489 PF14532 Sigma54_activ_2: Sigm 77.6 1.1 2.4E-05 46.7 1.4 26 148-173 19-44 (138)
490 COG3883 Uncharacterized protei 77.6 1.5E+02 0.0032 34.6 23.5 158 878-1046 39-212 (265)
491 cd04508 TUDOR Tudor domains ar 77.5 5.3 0.00011 33.5 5.2 45 11-55 1-48 (48)
492 cd03226 ABC_cobalt_CbiO_domain 77.5 1.8 3.9E-05 48.3 3.1 24 148-171 24-47 (205)
493 cd03269 ABC_putative_ATPase Th 77.5 1.9 4E-05 48.3 3.2 24 148-171 24-47 (210)
494 PRK10908 cell division protein 77.4 1.9 4E-05 48.8 3.2 24 148-171 26-49 (222)
495 cd03230 ABC_DR_subfamily_A Thi 77.4 1.9 4.1E-05 46.8 3.1 24 148-171 24-47 (173)
496 TIGR03410 urea_trans_UrtE urea 77.4 1.3 2.8E-05 50.4 1.9 32 148-179 24-55 (230)
497 PRK03839 putative kinase; Prov 77.3 1.8 4E-05 47.1 3.1 22 153-174 3-24 (180)
498 PF10205 KLRAQ: Predicted coil 77.3 38 0.00083 33.6 11.5 74 972-1045 2-75 (102)
499 cd03219 ABC_Mj1267_LivG_branch 77.3 1.7 3.7E-05 49.5 2.9 24 148-171 24-47 (236)
500 PF01580 FtsK_SpoIIIE: FtsK/Sp 77.3 1.9 4E-05 48.2 3.2 23 153-175 41-63 (205)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.8e-237 Score=2199.17 Aligned_cols=1362 Identities=33% Similarity=0.514 Sum_probs=1041.5
Q ss_pred CCccccccCcEEEEeCCCCCeEeEEEEEEc--CCeEEE--EecCCcEEEEecCccccCCCCC-CCCCcccccCCCCCChH
Q 000426 3 GTPVNIIVGSHVWVEDPEEAWIDGQVLKIT--GKDVEV--QTTKGKKVVANLSKIYPKDMEE-PAGGVDDMTKLSYLHEP 77 (1525)
Q Consensus 3 ~~~~~~~~g~~vwv~~~~~~w~~~~v~~~~--~~~~~v--~~~~g~~~~~~~~~~~~~~~~~-~~~~~~Dl~~L~~l~e~ 77 (1525)
|+..+..+|+.||+||.+.+|+.|.|.+.+ ++.++. ...+|..+.++...+-...... -..++||||.|+|||||
T Consensus 1 ~~~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEp 80 (1463)
T COG5022 1 MSTTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEP 80 (1463)
T ss_pred CCccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcH
Confidence 345678999999999999999999999853 333332 2345544444443322111111 23789999999999999
Q ss_pred HHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecC
Q 000426 78 GVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSG 157 (1525)
Q Consensus 78 ~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisG 157 (1525)
+|||||+.||.+++||||+|.||||||||+.|| ||+.++|+.|++++..+++|||||||++||+.|...++||||||||
T Consensus 81 sVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISG 159 (1463)
T COG5022 81 AVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISG 159 (1463)
T ss_pred HHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEEecCCCcccceeeee
Q 000426 158 ESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRT 237 (1525)
Q Consensus 158 ESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~f~~~g~i~Ga~i~~ 237 (1525)
||||||||+||+||+|||++++.++....+||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+|
T Consensus 160 ESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~ 239 (1463)
T COG5022 160 ESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIET 239 (1463)
T ss_pred CCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhh
Confidence 99999999999999999999887766667999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccccccCCCCCcceeeeeccCC-CHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHHHHhchhhcccCHHH
Q 000426 238 YLLERSRVCQISSPERNYHCFYLLCNA-PQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLATRRAMDIVGISEKD 316 (1525)
Q Consensus 238 yLLEksRvv~q~~~ERnfHiFYql~~~-~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~Al~~lg~~~~~ 316 (1525)
|||||||||+|+.+|||||||||||++ +.+.++.+++..|.+|+||++|+|..++||||+++|..|+.||.++||+.++
T Consensus 240 YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~ee 319 (1463)
T COG5022 240 YLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEE 319 (1463)
T ss_pred hhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHH
Confidence 999999999999999999999999994 5555566777999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCCceEEccCChhhHHH
Q 000426 317 QEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALV 396 (1525)
Q Consensus 317 ~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~~A~~ 396 (1525)
|.+||++||||||||||+|..+.+ +.+...+. ..++.+|.|||||++.|.+||++|.|.+++|+|.+|+|..||..
T Consensus 320 q~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ 395 (1463)
T COG5022 320 QDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395 (1463)
T ss_pred HHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHH
Confidence 999999999999999999988654 44444443 36999999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh-------hhhhhhhhhHhhh
Q 000426 397 SRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEY 469 (1525)
Q Consensus 397 ~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya-------fn~~vF~~eq~ey 469 (1525)
+||||||+||++||+|||++||.+|...+...+|||||||||||+|+.|||||| ||||| ||+|||++|||||
T Consensus 396 irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQl-CINYtNEKLQQ~Fn~h~FklEQEeY 474 (1463)
T COG5022 396 IRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQL-CINYTNEKLQQFFNQHMFKLEQEEY 474 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHH-HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998777789999999999999999999999 99999 9999999999999
Q ss_pred hhcCcccccccccChHHHHHHHhc-CCCcceecchhhhcCCCCchHHHHHHHHHHhc--CCCCcccCCCCCCCeEEEecc
Q 000426 470 TKEEIDWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFANKLYQTFK--SHKRFVKPKFSRTDFAIAHYA 546 (1525)
Q Consensus 470 ~~E~I~w~~i~f~Dn~~~ldlie~-~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~--~~~~f~~p~~~~~~F~I~Hya 546 (1525)
.+|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+....|+|+|||
T Consensus 475 ~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYA 554 (1463)
T COG5022 475 VKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYA 554 (1463)
T ss_pred HHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeec
Confidence 999999999999999999999997 25599999999999999999999999999886 467899999999999999999
Q ss_pred cceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHccCCCeeeecc
Q 000426 547 GEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCV 626 (1525)
Q Consensus 547 g~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCI 626 (1525)
|+|+|+++||++||||++++++++|+.+|+|+||+.||+...... ++++++|+|++||.||+.||++|++|+|||||||
T Consensus 555 gDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCI 633 (1463)
T COG5022 555 GDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCI 633 (1463)
T ss_pred ccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEee
Confidence 999999999999999999999999999999999999998543333 4468999999999999999999999999999999
Q ss_pred CCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhccccccccc-----CCccHHHHHHHHHHHhC
Q 000426 627 KPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLE-----GNYDEKVACKKILEKKG 701 (1525)
Q Consensus 627 kPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-----~~~~~~~~~~~il~~~~ 701 (1525)
|||..|+|+.||+.+|+.|||||||||+|||+|+|||+||+|++|+.||++|.|.... ...|.+.+|+.||+.+.
T Consensus 634 kPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~ 713 (1463)
T COG5022 634 KPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELV 713 (1463)
T ss_pred CCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999997432 12467999999999987
Q ss_pred CC--CeeeccceeeccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhh
Q 000426 702 LQ--GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTIQRRIRTHIARRRFIALREATIVLQSLCRGRLACRVFDSMKKE 779 (1525)
Q Consensus 702 ~~--~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~~~r~~ 779 (1525)
++ .||+|+||||||+|+++.||++|+..++.+++.||+.|||++.|++|.+..+.+..+|...+|++.|+++..--.-
T Consensus 714 id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~ 793 (1463)
T COG5022 714 IDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKW 793 (1463)
T ss_pred CChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHH
Confidence 76 5999999999999999999999999999999999999999999999999999999999999999999887766667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 780 AAAVKIQKHIRRYDARTAYKRLHVSTLVLQ-TGLRTMAARKEFRFRKQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQT 858 (1525)
Q Consensus 780 ~AAi~IQk~~R~~~~Rr~y~~~r~a~i~IQ-s~~Rg~~aRr~~~~~~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ~ 858 (1525)
.+++.+|..||....|+.|...-..++.+| ..+|+...+.........++++.+|+.||.+..+++|..+.+.++.+|+
T Consensus 794 ~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~ 873 (1463)
T COG5022 794 RLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQS 873 (1463)
T ss_pred HhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHH
Confidence 799999999999999999999999999999 5556666665455666789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 859 RWRGRIARRELRKLKMAARETGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEANAS 938 (1525)
Q Consensus 859 ~~R~~~ARkel~~lk~~ar~~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~ 938 (1525)
.+|...|++++..++.+.+++.++...+..|+.++.++...+.......... +.+....|+.-+...+
T Consensus 874 ~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~---k~e~~a~lk~~l~~~d--------- 941 (1463)
T COG5022 874 AQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLLNNID--------- 941 (1463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHH---HHHHHHHHHHHhhccc---------
Confidence 9999999999999999999999999999999999988876554311110000 0111111211111100
Q ss_pred HHHHHHHHHHHHHhCChhhhhHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 939 LVKEREAAKKAIEEAPPVVKEKEVLVEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKK 1018 (1525)
Q Consensus 939 l~~e~e~~~~~l~e~~~~~~e~~~l~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~ 1018 (1525)
+++. .. .+.. ...++.+|.....+++......+. +-++......+......++....++
T Consensus 942 -----------~~~~-~~-~~~~----~~~~~~~l~~~~~~l~~~~~~~~~----~~k~~~~~~~~~~~~~~el~~~~~~ 1000 (1463)
T COG5022 942 -----------LEEG-PS-IEYV----KLPELNKLHEVESKLKETSEEYED----LLKKSTILVREGNKANSELKNFKKE 1000 (1463)
T ss_pred -----------ccch-hH-HHHH----hhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHhcccHHHHHHHHHHH
Confidence 0000 00 0000 001222232222222222222111 1111111111111111122222222
Q ss_pred HHHHHHHHHHHHHHHHhhHHH---HHHHHHHhhhcCCcccccccchhhhccCCCCCCCCCCCCcccccccCcCCCCCccc
Q 000426 1019 VIQLQESLTRLEEKLANLESE---NQVLRQQAVSIAPNKFLSGRSRSIIQRGADSGHIPGDAKSTLDLHSSSINHRDPLE 1095 (1525)
Q Consensus 1019 ~~~Lq~~l~~LEeki~~Le~E---~~~Lrqq~~~~~~~~~ls~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1525)
+.....+...+.++.+.++.. +..+........ .... ......+..... +... ........+..
T Consensus 1001 l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~---~~~~~~~~~~~~-~~~~-----~~~~~l~~~~~- 1067 (1463)
T COG5022 1001 LAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SEST---ELSILKPLQKLK-GLLL-----LENNQLQARYK- 1067 (1463)
T ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchh---hhhccCcccchh-hhhh-----HHHHHhhhhHh-
Confidence 222222222222222222222 222221110000 0000 000000000000 0000 00000000000
Q ss_pred cccccccc--chH----HHhhcHHHHHHHhh-hcCCCCC---CCChhHHHHHHHHhhhcc-hhhhhhHHHHHHHHHHHHH
Q 000426 1096 IEEKPQKS--LNE----KQQENQELLIRCIA-QHLGFAG---NRPIAACIIYKCLLQWRS-FEVERTSVFDRIIQTIGNA 1164 (1525)
Q Consensus 1096 ~e~klqr~--l~E----~qqEn~dLli~~l~-~~~gf~~---~~p~~A~ilf~cl~~w~~-~~~e~~~l~~~ii~~I~~~ 1164 (1525)
..+.++. +.+ .+.+...-+.+.+. .++...+ .+|. ..+.|...-+|++ ...+...++...+..+..+
T Consensus 1068 -~l~~~r~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~ 1145 (1463)
T COG5022 1068 -ALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA-NVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPV 1145 (1463)
T ss_pred -hhhhcCcccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchh-hHHHHHHHHhhccchHHhhhhHHHHHHhhccch
Confidence 0001110 110 11222222222222 2121211 1222 3344555567776 4455556666666666666
Q ss_pred Hhc--cCCC-cccceehHhHHHHHHHHHHHhhhcCCCCCCCccCCCCcchhhhcccccccCCCCCcccccccCCcCCCcc
Q 000426 1165 IET--QDNN-DILAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPQGVNLSLINGGVNGGVD 1241 (1525)
Q Consensus 1165 i~~--~~d~-~~layWLSNt~~Ll~~lq~~l~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 (1525)
... .++. -.+.||.+|...+++.--- ....+.+ ++ + ....+.. ..+..+
T Consensus 1146 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~-------~~----~-----~~~~d~~-----~~~s~s 1197 (1463)
T COG5022 1146 FQKLSVLQLELDGLFWEANLEALPSPPPF-------AALSEKR-------LY----Q-----SALYDEK-----SKLSSS 1197 (1463)
T ss_pred hccccchhccccccccccccccCCCCCch-------hhcchhh-------hh----H-----hhhhccc-----ccccHH
Confidence 554 2222 3367999999887531000 0000000 00 0 0000100 000001
Q ss_pred chhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCccccCCCccccchhhhhhhhhhHHHHH
Q 000426 1242 TLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANSAAQQALIAHWQGIV 1321 (1525)
Q Consensus 1242 ~~~~v~~~~~~~~fkqqL~~~~~~iy~~l~~~l~k~l~plL~~~i~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~il 1321 (1525)
.....+..+.++..++|..|.... .+.+++.+.+ .|..-.......++ ++.....+...+.++++
T Consensus 1198 ---------~v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll 1262 (1463)
T COG5022 1198 ---------EVNDLKNELIALFSKIFSGWPRGD--KLKKLISEGW-VPTEYSTSLKGFNN---LNKKFDTPASMSNEKLL 1262 (1463)
T ss_pred ---------HHHHHHHHHHHHHHhccccchhhh--hhhhhhhhcc-chhhhccccccccc---hhhcccCcccCcHHHHH
Confidence 112346788888888999887654 3333332211 11110000000000 01111122345778999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCCCCccchhHHhhchHHHHHHHhhcCcccccchHhhh
Q 000426 1322 KSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDEL 1401 (1525)
Q Consensus 1322 ~~L~~~~~~l~~~~v~~~li~q~f~Qlf~fIn~~lfN~LllRr~~Cs~s~G~qir~nls~LE~W~~~~~~~~~~~a~~~L 1401 (1525)
.+++.+.+.++.+.+.+.+....++++.-++|+.+||.|-.|+.--+|+.|.++.||.+.+++||+.++ ...+..+|
T Consensus 1263 ~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l 1339 (1463)
T COG5022 1263 SLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE---ISDVDEEL 1339 (1463)
T ss_pred HHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc---ccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 45566899
Q ss_pred hhHHHHHHHHhhcCCCcCCHhHHHhccCCCCCHHHHHHHHhcCccCCCCCccCCHHHHHHHHhhhh
Q 000426 1402 KHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMT 1467 (1525)
Q Consensus 1402 ~~l~Qa~~lL~~~~k~~~~~~~i~~~~C~~Ls~~QI~kil~~Y~~d~~e~~~Vs~~~i~~~~~~~~ 1467 (1525)
++++||++.+++.+++...++++ .+.|.+|+|.||.+|+.+|.+.++| .++|.+|..+|.+...
T Consensus 1340 ~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1340 EELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred HHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 99999999999987777777777 6999999999999999999999998 5999999977755544
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=6.4e-203 Score=1914.95 Aligned_cols=762 Identities=34% Similarity=0.558 Sum_probs=711.7
Q ss_pred ccccccCcEEEE-------eCCCCCeEeEEEE-EEcCCeEEEEe---cCCcEEEEecCccccCCCCCCCCCcccccCCCC
Q 000426 5 PVNIIVGSHVWV-------EDPEEAWIDGQVL-KITGKDVEVQT---TKGKKVVANLSKIYPKDMEEPAGGVDDMTKLSY 73 (1525)
Q Consensus 5 ~~~~~~g~~vwv-------~~~~~~w~~~~v~-~~~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 73 (1525)
+.++.+|+.||+ +||+++|+.|+|+ ..+|+.++|.. ++|++++++.+++++.|++.++.+++||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 456789999998 6889999999999 78899998875 579999999999999998766788999999999
Q ss_pred CChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCC-CCCCCCchHHHHHHHHHHHHHhcCCCcE
Q 000426 74 LHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA-PFGELSPHVFAVADVAYRAMVNEGKSNS 152 (1525)
Q Consensus 74 l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~-~~~~~~PHifavA~~Ay~~m~~~~~~Qs 152 (1525)
||||+|||||+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999998 9999999999985 5788999999999999999999999999
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEEecCCCcccc
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISG 232 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~f~~~g~i~G 232 (1525)
|||||||||||||+||++|+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999876532 2357999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHHHHhchhhcc
Q 000426 233 AAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLATRRAMDIVG 311 (1525)
Q Consensus 233 a~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~Al~~lg 311 (1525)
|+|.+|||||||||+|++||||||||||||+ +++++++.|+|.++.+|+||++ +|+.++|+||+++|.+|+.||++||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCeeeecCCC---CCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCCceEEcc
Q 000426 312 ISEKDQEAIFRVVAAILHIGNIEFSKGKE---VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPEEVIKRS 388 (1525)
Q Consensus 312 ~~~~~~~~i~~ilaaILhLGni~f~~~~~---~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~ 388 (1525)
|+++++.+||+|||||||||||+|.+... .|++.+.+. +..++..||+|||||+++|.++||+|++.+++|.+++|
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 345555443 34579999999999999999999999999999999999
Q ss_pred CChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh-------hhhhh
Q 000426 389 LDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHV 461 (1525)
Q Consensus 389 l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya-------fn~~v 461 (1525)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||| ||||| ||+||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQL-cINy~NEkLQq~F~~~v 500 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQL-FINITNEMLQKNFVDIV 500 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766778999999999999999999999 99999 99999
Q ss_pred hhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCcccCCC-CCCCe
Q 000426 462 FKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVKPKF-SRTDF 540 (1525)
Q Consensus 462 F~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~p~~-~~~~F 540 (1525)
|+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++++++|++|.+|+. ....|
T Consensus 501 F~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F 580 (821)
T PTZ00014 501 FERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNF 580 (821)
T ss_pred HHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 46899
Q ss_pred EEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHccCCC
Q 000426 541 AIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMDTLNSTEP 620 (1525)
Q Consensus 541 ~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~ 620 (1525)
+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+|||++||.||+.||++|++|+|
T Consensus 581 ~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~p 660 (821)
T PTZ00014 581 VIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEP 660 (821)
T ss_pred EEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999865444334446789999999999999999999999
Q ss_pred eeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccccC-CccHHHHHHHHHHH
Q 000426 621 HYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEG-NYDEKVACKKILEK 699 (1525)
Q Consensus 621 hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~~~~il~~ 699 (1525)
|||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+..... ..|++++|+.||+.
T Consensus 661 hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~ 740 (821)
T PTZ00014 661 HFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLER 740 (821)
T ss_pred eEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998875432 35899999999999
Q ss_pred hCC--CCeeeccceeeccchHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 000426 700 KGL--QGFQIGKTKIFLRAGQMAELDARRAEILS---SAAKTIQRRIRTHIARRRFIALREATIVLQSLCRGRLACRV 772 (1525)
Q Consensus 700 ~~~--~~~~~G~TkVF~r~~~~~~LE~~R~~~l~---~aa~~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~~Rg~laRk~ 772 (1525)
+++ ++|++|+||||||+|+++.||.+|.+++. .+++.||++||+|++|++|++.+.+++.||+++||+++++.
T Consensus 741 ~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 741 SGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred cCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 876 58999999999999999999998887764 68899999999999999999999988888888888887753
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=7e-187 Score=1721.50 Aligned_cols=747 Identities=61% Similarity=0.972 Sum_probs=717.0
Q ss_pred CCCCCCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHH
Q 000426 59 EEPAGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVAD 138 (1525)
Q Consensus 59 ~~~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~ 138 (1525)
+.|+.|+||||.|+|||||+|||||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+||||+
T Consensus 4 ~~~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~ 82 (862)
T KOG0160|consen 4 NPPPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAE 82 (862)
T ss_pred CCCCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHH
Confidence 3344799999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccc
Q 000426 139 VAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGK 218 (1525)
Q Consensus 139 ~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK 218 (1525)
.||+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+||||||||||
T Consensus 83 ~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK 160 (862)
T KOG0160|consen 83 EAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGK 160 (862)
T ss_pred HHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhh
Confidence 999999999999999999999999999999999999999986 446799999999999999999999999999999999
Q ss_pred eEEEEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccCCCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHH
Q 000426 219 FVEIQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAH 298 (1525)
Q Consensus 219 ~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~ 298 (1525)
|++|+||.+|+|+||+|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++|++|++
T Consensus 161 ~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 161 VIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999954499999999999999999999999999999999
Q ss_pred HHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000426 299 DYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIM 378 (1525)
Q Consensus 299 ~f~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 378 (1525)
+|..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++.+.++ ++..+|+||||+.+.|..||++|.+
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i 316 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKI 316 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998776666555543 7999999999999999999999999
Q ss_pred ecCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhcccccc-CCCCCceEEeecccccccccCCCCCcchhhhhh-
Q 000426 379 ITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQ-DPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS- 456 (1525)
Q Consensus 379 ~~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya- 456 (1525)
.++++++++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|+.|||||| |||||
T Consensus 317 ~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQf-cINyan 395 (862)
T KOG0160|consen 317 LTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQF-CINYAN 395 (862)
T ss_pred hcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHh-hhhhHH
Confidence 999999999999999999999999999999999999999999997 455689999999999999999999999 99999
Q ss_pred ------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCc
Q 000426 457 ------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRF 530 (1525)
Q Consensus 457 ------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f 530 (1525)
||+|||++||+||.+|||+|+.|+|.|||+|+|+||+ |.|+++||||||++|.++|++|..||++.+.+|+.|
T Consensus 396 EkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f 474 (862)
T KOG0160|consen 396 EKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRF 474 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHHHH
Q 000426 531 VKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQ 610 (1525)
Q Consensus 531 ~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~ 610 (1525)
.+|+++++.|+|.||||+|+|+++|||+||||+|++++++++..|+++|+..+|++...+.++.++++|||++|+.||..
T Consensus 475 ~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~ 554 (862)
T KOG0160|consen 475 TKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLIS 554 (862)
T ss_pred CCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997666655566889999999999999
Q ss_pred HHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccccCCccHH
Q 000426 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEK 690 (1525)
Q Consensus 611 Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~ 690 (1525)
||++|++|+||||||||||+.+.|+.|++.+|++|||||||||+|||+++|||.|++|.||+.||++|+| .... .|++
T Consensus 555 Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~~-~~~~ 632 (862)
T KOG0160|consen 555 LMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDSA-SDDL 632 (862)
T ss_pred HHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chhc-ccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 4333 3569
Q ss_pred HHHHHHHHHhCCCCeeeccceeeccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000426 691 VACKKILEKKGLQGFQIGKTKIFLRAGQMAELDARRAEILSSAAKTIQRRIRTHIARRRFIALREATIVLQSLCRGRLAC 770 (1525)
Q Consensus 691 ~~~~~il~~~~~~~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~~Rg~laR 770 (1525)
..|+.||+..+.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+++||+++|
T Consensus 633 ~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r 712 (862)
T KOG0160|consen 633 SLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLAR 712 (862)
T ss_pred HHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHH
Q 000426 771 RVFDSMKKEAAAVKIQKHIRRYDARTAYKRLHVSTLVLQTGLRTMAARK 819 (1525)
Q Consensus 771 k~~~~~r~~~AAi~IQk~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr 819 (1525)
+ ..+ +..||+.||+.+|+|..|++|..++.+++.+|+.+||+.+|+
T Consensus 713 ~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 713 R--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred H--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8 444 778999999999999999999999999999999999999987
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-184 Score=1809.53 Aligned_cols=767 Identities=42% Similarity=0.692 Sum_probs=706.1
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEEcCCeEEEEecCCcEEE-EecCccccCCCCCCCCCcccccCCCCCChHHHHHHHH
Q 000426 6 VNIIVGSHVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVV-ANLSKIYPKDMEEPAGGVDDMTKLSYLHEPGVLRNLK 84 (1525)
Q Consensus 6 ~~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vL~~L~ 84 (1525)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ ++.+.++|+||+ ....++||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456667899999999999999999988777999998777766 999999999964 235799999999999999999999
Q ss_pred HHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChh
Q 000426 85 TRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKT 164 (1525)
Q Consensus 85 ~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKT 164 (1525)
.||.++.||||+|.+||+||||++|| ||++++++.|+|+...++||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccC---CccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEEecCCCcccceeeeeeecc
Q 000426 165 ETTKMLMRYLAFLGGRTATE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLE 241 (1525)
Q Consensus 165 es~k~~~~yla~~~~~~~~~---~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~f~~~g~i~Ga~i~~yLLE 241 (1525)
|+||.|++|||.+++++... +.+++++|+++||||||||||+|++|+|||||||||+|+|+.+|.|+||.|.+||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 258999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCcceeeeeccC-CCHHhHHhcCCCC-CCCCcccCCCCcccccCCCcHHHHHHHHhchhhcccCHHHHHH
Q 000426 242 RSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGN-PKTFHYLNQSTCFELVGVSDAHDYLATRRAMDIVGISEKDQEA 319 (1525)
Q Consensus 242 ksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~-~~~~~yl~~~~~~~~~~~~d~~~f~~~~~Al~~lg~~~~~~~~ 319 (1525)
||||++|+++||||||||||++ +++.++..|.|.+ +.+|.|+.++.. .++|+||+++|..|..||++|||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999998 7888999999976 899999999887 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCCceEEccCChhhHHHhHh
Q 000426 320 IFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPEEVIKRSLDPQSALVSRD 399 (1525)
Q Consensus 320 i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~~A~~~rd 399 (1525)
||+|+||||||||+.|......+.+.+.+. .....+|.||||+.++|.++|+++++.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 999999999999999998755566666543 46899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh-------hhhhhhhhhHhhhhhc
Q 000426 400 GLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKE 472 (1525)
Q Consensus 400 alak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya-------fn~~vF~~eq~ey~~E 472 (1525)
||||++|+|||.|||.+||.+|.......+|||||||+|||+|+.|||||| ||||+ ||+|+|.+||++|.+|
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQL-ciNytnEkLQqfFnh~mFvlEqeeY~~E 497 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQL-CINYTNEKLQQFFNHHMFVLEQEEYQRE 497 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHH-HHHHHHHHHHhhhcchhhhhhHHHHHHh
Confidence 999999999999999999999998877889999999999999999999999 99999 9999999999999999
Q ss_pred Ccccccccc-cChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHh-cCCCCcccCC--CCCCCeEEEecccc
Q 000426 473 EIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVKPK--FSRTDFAIAHYAGE 548 (1525)
Q Consensus 473 ~I~w~~i~f-~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~-~~~~~f~~p~--~~~~~F~I~Hyag~ 548 (1525)
||.|+|||| .|-||||||||+ |.||+++|||||++|++||.+|++||+..| ++|+.|.+|+ ....+|.|.||||+
T Consensus 498 gIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~ 576 (1930)
T KOG0161|consen 498 GIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGT 576 (1930)
T ss_pred CCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecce
Confidence 999999999 799999999995 569999999999999999999999999999 8999999997 45689999999999
Q ss_pred eeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcc-----------cccCCCCCcchhHHHHHHHHHHHHHHcc
Q 000426 549 VMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPE-----------ETSKSSKFSSIGSRFKLQLQQLMDTLNS 617 (1525)
Q Consensus 549 V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~L~~Lm~~l~~ 617 (1525)
|.|+++|||+||+|++++.++.+|+.|++++|+.||.+... ...|++.|.||+..+|.||+.||++|++
T Consensus 577 V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~ 656 (1930)
T KOG0161|consen 577 VDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRS 656 (1930)
T ss_pred eccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999987311 1234557889999999999999999999
Q ss_pred CCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhccccccccc-CCccHHHHHHHH
Q 000426 618 TEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLE-GNYDEKVACKKI 696 (1525)
Q Consensus 618 t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~i 696 (1525)
|+|||||||.||..|.|+.+|.++|+.||||.||||+|||+|.|||+|++|.+|..||.++.|.... +..|.+.+|..|
T Consensus 657 T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~ 736 (1930)
T KOG0161|consen 657 THPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKI 736 (1930)
T ss_pred CCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999955555433 346779999999
Q ss_pred HHHhCCC--CeeeccceeeccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 000426 697 LEKKGLQ--GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTIQRRIRTHIARRRFIALREATIVLQSLCRGRLACRVFD 774 (1525)
Q Consensus 697 l~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~ 774 (1525)
+..+..+ -|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+..
T Consensus 737 ~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~-------------------- 796 (1930)
T KOG0161|consen 737 LEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRL-------------------- 796 (1930)
T ss_pred HHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 9988653 699999999999999999999999988887777777766666666654322
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000426 775 SMKKEAAAVKIQKHIRRYDARTAYKRLH 802 (1525)
Q Consensus 775 ~~r~~~AAi~IQk~~R~~~~Rr~y~~~r 802 (1525)
.+..|+.+||+++|.|+..+.|.+++
T Consensus 797 --~~~~ai~~iQ~N~r~~~~lr~w~W~~ 822 (1930)
T KOG0161|consen 797 --QQLDAIKVIQRNIRAYLKLRTWPWWR 822 (1930)
T ss_pred --HHHHHHHHHHHHHHHHHhhccCHHHH
Confidence 24467888999999998888877665
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.5e-187 Score=1753.88 Aligned_cols=667 Identities=83% Similarity=1.306 Sum_probs=642.0
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHH
Q 000426 63 GGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYR 142 (1525)
Q Consensus 63 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 142 (1525)
.|+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+|++|+++.|+.|+++..+++|||||+||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEE
Q 000426 143 AMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 222 (1525)
Q Consensus 143 ~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l 222 (1525)
+|.+.++||||||||||||||||++|++|+|||.+++..+..+.+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555567899999999999999999999999999999999999
Q ss_pred EecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccCCCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHH
Q 000426 223 QFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCNAPQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302 (1525)
Q Consensus 223 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 302 (1525)
+||.+|.|+||+|.+|||||||||.|++||||||||||||++++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCC
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE 382 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 382 (1525)
|+.||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...+..||.||||++++|.++|+++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987665567777665556789999999999999999999999999999
Q ss_pred ceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh------
Q 000426 383 EVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS------ 456 (1525)
Q Consensus 383 e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya------ 456 (1525)
|.+++|+++++|.++||||||+||++||+|||.+||.+|+++..+..+||||||||||+|+.|||||| |||||
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQL-cINyaNEkLQ~ 399 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQF-CINLTNEKLQQ 399 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHH-HhhhhHHHHHH
Confidence 99999999999999999999999999999999999999998877889999999999999999999999 99999
Q ss_pred -hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCcccCCC
Q 000426 457 -CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVKPKF 535 (1525)
Q Consensus 457 -fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~p~~ 535 (1525)
||+|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|++|.+|+.
T Consensus 400 ~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (674)
T cd01384 400 HFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKL 479 (674)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHHHHHHHHH
Q 000426 536 SRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMDTL 615 (1525)
Q Consensus 536 ~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l 615 (1525)
.+..|+|+||||+|+|+++||++||||.++++++++|+.|++++|+.||+..+..+++++++.||+++||.||+.||++|
T Consensus 480 ~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L 559 (674)
T cd01384 480 SRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETL 559 (674)
T ss_pred CCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998766555555678999999999999999999
Q ss_pred ccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccccCCccHHHHHHH
Q 000426 616 NSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKK 695 (1525)
Q Consensus 616 ~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ 695 (1525)
++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......|+++.|+.
T Consensus 560 ~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~ 639 (674)
T cd01384 560 STTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKK 639 (674)
T ss_pred hccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876555688999999
Q ss_pred HHHHhCCCCeeeccceeeccchHHHHHHHHHHHHh
Q 000426 696 ILEKKGLQGFQIGKTKIFLRAGQMAELDARRAEIL 730 (1525)
Q Consensus 696 il~~~~~~~~~~G~TkVF~r~~~~~~LE~~R~~~l 730 (1525)
||+.++.++|++|+||||||+|+++.||.+|++.+
T Consensus 640 il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 640 ILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998753
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5.7e-183 Score=1724.39 Aligned_cols=657 Identities=50% Similarity=0.832 Sum_probs=619.6
Q ss_pred CcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Q 000426 64 GVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRA 143 (1525)
Q Consensus 64 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 143 (1525)
|+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCc--cCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEE
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTA--TEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 221 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~--~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~ 221 (1525)
|..+++||||||||||||||||++|+||+|||.++++.. ....+|+++|+++||||||||||||+|||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 224679999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHH
Q 000426 222 IQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDY 300 (1525)
Q Consensus 222 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 300 (1525)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 7899999999999999999999999999999999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeec
Q 000426 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMIT 380 (1525)
Q Consensus 301 ~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 380 (1525)
..|+.||++|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++||+|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 3322322 234799999999999999999999999999
Q ss_pred CCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccC---CCCCceEEeecccccccccCCCCCcchhhhhh-
Q 000426 381 PEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQD---PNSKSLIGVLDIYGFESFKSNSKTPLICFIIS- 456 (1525)
Q Consensus 381 ~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya- 456 (1525)
++|.+++|++++||.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||| |||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQL-cINyaN 395 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQF-CINYAN 395 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHH-hhhhhh
Confidence 99999999999999999999999999999999999999999876 45678999999999999999999999 99999
Q ss_pred ------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhc--CCC
Q 000426 457 ------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFK--SHK 528 (1525)
Q Consensus 457 ------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~--~~~ 528 (1525)
||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.|+ +|+
T Consensus 396 EkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~ 474 (691)
T cd01380 396 EKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNP 474 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999975 699999999999999999999999999998 899
Q ss_pred CcccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccc-----------------
Q 000426 529 RFVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEET----------------- 591 (1525)
Q Consensus 529 ~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------------- 591 (1525)
.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+
T Consensus 475 ~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 554 (691)
T cd01380 475 HFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPK 554 (691)
T ss_pred CccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhccccccccccccccccccccc
Confidence 999999988999999999999999999999999999999999999999999999997532111
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHH
Q 000426 592 SKSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEF 671 (1525)
Q Consensus 592 ~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F 671 (1525)
.+..+.+||+++||.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|
T Consensus 555 ~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F 634 (691)
T cd01380 555 RAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEF 634 (691)
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHH
Confidence 01235689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccCCccHHHHHHHHHHHhCC--CCeeeccceeeccchHHHHHHHHH
Q 000426 672 LNRFGLLAPEFLEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 672 ~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
+.||++|+|.......|+++.|+.||+.+.. +.|++|+||||||+|+++.||++|
T Consensus 635 ~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 635 AQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999999998664456889999999999875 589999999999999999999876
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.6e-182 Score=1717.52 Aligned_cols=659 Identities=43% Similarity=0.732 Sum_probs=619.6
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHH
Q 000426 62 AGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAY 141 (1525)
Q Consensus 62 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 141 (1525)
..++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++|+.|+++..+++||||||||+.||
T Consensus 4 ~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay 82 (693)
T cd01377 4 FDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNAY 82 (693)
T ss_pred ccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCc------cCCccHHHHHhhhchHHHhhcCcccccCCCCCc
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTA------TEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSR 215 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~------~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSR 215 (1525)
+.|...++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+|||||||
T Consensus 83 ~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSR 162 (693)
T cd01377 83 RSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSR 162 (693)
T ss_pred HHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccc
Confidence 99999999999999999999999999999999999986532 123579999999999999999999999999999
Q ss_pred ccceEEEEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCC-CCCcccCCCCcccccC
Q 000426 216 FGKFVEIQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNP-KTFHYLNQSTCFELVG 293 (1525)
Q Consensus 216 fGK~i~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~-~~~~yl~~~~~~~~~~ 293 (1525)
||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++ .+|+||++++| .+++
T Consensus 163 FGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~~ 241 (693)
T cd01377 163 FGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIPG 241 (693)
T ss_pred cceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCCC
Confidence 999999999999999999999999999999999999999999999999 78999999999876 99999999886 4789
Q ss_pred CCcHHHHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHH
Q 000426 294 VSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDAL 373 (1525)
Q Consensus 294 ~~d~~~f~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L 373 (1525)
+||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. .++..||.|||||+++|.++|
T Consensus 242 ~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l 318 (693)
T cd01377 242 VDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKAL 318 (693)
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999987644455555543 579999999999999999999
Q ss_pred hhceeecCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhh
Q 000426 374 CKRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICF 453 (1525)
Q Consensus 374 ~~r~~~~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cI 453 (1525)
|++++.+++|.+++|+++++|.++||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||| ||
T Consensus 319 ~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQL-cI 397 (693)
T cd01377 319 LHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQL-CI 397 (693)
T ss_pred cceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHH-HH
Confidence 99999999999999999999999999999999999999999999999998877889999999999999999999999 99
Q ss_pred hhh-------hhhhhhhhhHhhhhhcCcccccccc-cChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhc
Q 000426 454 IIS-------CCAHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFK 525 (1525)
Q Consensus 454 Nya-------fn~~vF~~eq~ey~~E~I~w~~i~f-~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~ 525 (1525)
||| ||+|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 999 9999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCc--ccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccc----------cC
Q 000426 526 SHKRF--VKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEET----------SK 593 (1525)
Q Consensus 526 ~~~~f--~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~ 593 (1525)
+|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+ .+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99887 4455567899999999999999999999999999999999999999999999997543211 12
Q ss_pred CCCCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHH
Q 000426 594 SSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLN 673 (1525)
Q Consensus 594 ~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 673 (1525)
+++++||+++||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccc-cCCccHHHHHHHHHHHhCCC--CeeeccceeeccchHHHHHHHHH
Q 000426 674 RFGLLAPEFL-EGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 674 ry~~l~~~~~-~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
||++|+|... ....|.++.|+.||+.++++ +|++|+||||||+|++..||++|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998763 33458899999999998764 89999999999999999999876
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.4e-182 Score=1710.90 Aligned_cols=654 Identities=44% Similarity=0.744 Sum_probs=618.9
Q ss_pred CcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Q 000426 64 GVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRA 143 (1525)
Q Consensus 64 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 143 (1525)
|+|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEE
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~ 223 (1525)
|.++++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHH
Q 000426 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302 (1525)
Q Consensus 224 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 302 (1525)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++|+||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCC--CCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeec
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE--VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMIT 380 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~--~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 380 (1525)
|+.||++|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ..+++.||.|||||+++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 34555554 35799999999999999999999999999
Q ss_pred CCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccC-CCCCceEEeecccccccccCCCCCcchhhhhh---
Q 000426 381 PEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQD-PNSKSLIGVLDIYGFESFKSNSKTPLICFIIS--- 456 (1525)
Q Consensus 381 ~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya--- 456 (1525)
++|++++|++++||.++||||||+||++||+|||.+||.+|.++ .....+||||||||||+|+.|||||| |||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQL-cINy~NEk 391 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQL-CINFANEN 391 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999 99999
Q ss_pred ----hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCccc
Q 000426 457 ----CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVK 532 (1525)
Q Consensus 457 ----fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~ 532 (1525)
||+|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++|++|.+
T Consensus 392 LQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~ 471 (671)
T cd01381 392 LQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLK 471 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccc-cCCCCCcchhHHHHHHHHH
Q 000426 533 PKF-SRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEET-SKSSKFSSIGSRFKLQLQQ 610 (1525)
Q Consensus 533 p~~-~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~L~~ 610 (1525)
|+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+ ..+.+.+||+++||.||+.
T Consensus 472 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~ 551 (671)
T cd01381 472 PKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDL 551 (671)
T ss_pred CCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHH
Confidence 875 46799999999999999999999999999999999999999999999998654222 1233678999999999999
Q ss_pred HHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccccC--Ccc
Q 000426 611 LMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEG--NYD 688 (1525)
Q Consensus 611 Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~--~~~ 688 (1525)
||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..|
T Consensus 552 L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~ 631 (671)
T cd01381 552 LMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDC 631 (671)
T ss_pred HHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875432 347
Q ss_pred HHHHHHHHHHHhCC--CCeeeccceeeccchHHHHHHHHH
Q 000426 689 EKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 689 ~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
.+++|+.|++.+.+ ++|++|+||||||+++++.||+.|
T Consensus 632 ~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 632 LAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 78999999998765 589999999999999999999875
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=5.5e-181 Score=1702.16 Aligned_cols=655 Identities=43% Similarity=0.740 Sum_probs=620.3
Q ss_pred CcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Q 000426 64 GVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRA 143 (1525)
Q Consensus 64 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 143 (1525)
|+|||+.|++|||++|||+|+.||..++||||+|+||||||||+.+| +|++++|+.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEE
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~ 223 (1525)
|...++||||||||||||||||++|++|+|||.++++.. ....++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2356999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHH
Q 000426 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302 (1525)
Q Consensus 224 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 302 (1525)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCC
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE 382 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 382 (1525)
|+.||++|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||.|||||+++|.++||+|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2334443 3579999999999999999999999999998
Q ss_pred ----ceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccC-CCCCceEEeecccccccccCCCCCcchhhhhh-
Q 000426 383 ----EVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQD-PNSKSLIGVLDIYGFESFKSNSKTPLICFIIS- 456 (1525)
Q Consensus 383 ----e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya- 456 (1525)
|.+++|+++++|.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||| |||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQL-cINyaN 393 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQF-CINYVN 393 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHH-HhHHHH
Confidence 999999999999999999999999999999999999999976 55678999999999999999999999 99999
Q ss_pred ------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhc-CCCcceecchhhhcCC-CCchHHHHHHHHHHhcCCC
Q 000426 457 ------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFANKLYQTFKSHK 528 (1525)
Q Consensus 457 ------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~-~~~Gil~lLdee~~~p-~~td~~~~~kl~~~~~~~~ 528 (1525)
||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++++++|+
T Consensus 394 EkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~ 473 (674)
T cd01378 394 EKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHP 473 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999 8999999999999999 9999999999999999999
Q ss_pred CcccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHH
Q 000426 529 RFVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQL 608 (1525)
Q Consensus 529 ~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L 608 (1525)
+|.+|+..+..|+|+||||+|+|+++||++||||.++++++++|++|++++|+.||+......+ ..+.+|||++||.||
T Consensus 474 ~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL 552 (674)
T cd01378 474 HSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSA 552 (674)
T ss_pred CCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHH
Confidence 9998888889999999999999999999999999999999999999999999999985433322 235689999999999
Q ss_pred HHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccc-cCCc
Q 000426 609 QQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL-EGNY 687 (1525)
Q Consensus 609 ~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~-~~~~ 687 (1525)
+.||++|++|+||||||||||+.|+|+.||...|++||||+||||||||+|.|||+|++|.+|++||++|++... ....
T Consensus 553 ~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~ 632 (674)
T cd01378 553 NALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPG 632 (674)
T ss_pred HHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998743 2345
Q ss_pred cHHHHHHHHHHHhCC--CCeeeccceeeccch-HHHHHHHHH
Q 000426 688 DEKVACKKILEKKGL--QGFQIGKTKIFLRAG-QMAELDARR 726 (1525)
Q Consensus 688 ~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~-~~~~LE~~R 726 (1525)
|++++|+.||+.+++ ++|++|+||||||+| +++.||..|
T Consensus 633 ~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 633 DAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred CHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 889999999999876 489999999999998 789999876
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=9.6e-181 Score=1694.80 Aligned_cols=648 Identities=46% Similarity=0.782 Sum_probs=607.7
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHH
Q 000426 63 GGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYR 142 (1525)
Q Consensus 63 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 142 (1525)
.|+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++. .+||||||||+.||+
T Consensus 8 ~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~ 84 (677)
T cd01383 8 DGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAYN 84 (677)
T ss_pred cCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998 99999999999864 469999999999999
Q ss_pred HHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEE
Q 000426 143 AMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 222 (1525)
Q Consensus 143 ~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l 222 (1525)
.|..+++||||||||||||||||++|++|+|||.++++ ..++++|+++||||||||||||+|||||||||||++|
T Consensus 85 ~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l 159 (677)
T cd01383 85 EMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEI 159 (677)
T ss_pred HHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEE
Confidence 99999999999999999999999999999999998753 3699999999999999999999999999999999999
Q ss_pred EecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHH
Q 000426 223 QFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYL 301 (1525)
Q Consensus 223 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~ 301 (1525)
+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|+.++++||+++|.
T Consensus 160 ~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~ 239 (677)
T cd01383 160 HFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFH 239 (677)
T ss_pred EECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred HHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecC
Q 000426 302 ATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITP 381 (1525)
Q Consensus 302 ~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~ 381 (1525)
+|+.||+.|||+++++.+||+|||||||||||+|.+.++.+.+.+.+ ...+..||.|||||+++|.++||++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 316 (677)
T cd01383 240 TLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHVN 316 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEeC
Confidence 99999999999999999999999999999999998654433333332 347999999999999999999999999999
Q ss_pred CceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCC-CCCceEEeecccccccccCCCCCcchhhhhh----
Q 000426 382 EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICFIIS---- 456 (1525)
Q Consensus 382 ~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQl~cINya---- 456 (1525)
+|.++++++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||| |||||
T Consensus 317 ~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQL-cINyaNEkL 395 (677)
T cd01383 317 NDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQF-CINYANERL 395 (677)
T ss_pred CceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999999998754 3467999999999999999999999 99999
Q ss_pred ---hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCcccC
Q 000426 457 ---CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVKP 533 (1525)
Q Consensus 457 ---fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~p 533 (1525)
||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+|
T Consensus 396 Q~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 475 (677)
T cd01383 396 QQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGE 475 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCC-----cc------cccCCCCCcchhH
Q 000426 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPL-----PE------ETSKSSKFSSIGS 602 (1525)
Q Consensus 534 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~-----~~------~~~~~~~~~tv~~ 602 (1525)
+ ...|+|+||||+|+|+++||++||||.++++++++|++|+++++. +|... +. ...+.++..||++
T Consensus 476 ~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~ 552 (677)
T cd01383 476 R--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGT 552 (677)
T ss_pred C--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHH
Confidence 5 578999999999999999999999999999999999999999876 55321 10 0112236789999
Q ss_pred HHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhccccccc
Q 000426 603 RFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682 (1525)
Q Consensus 603 ~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 682 (1525)
+||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++..
T Consensus 553 ~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 632 (677)
T cd01383 553 KFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLEN 632 (677)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccCCccHHHHHHHHHHHhCC--CCeeeccceeeccchHHHHHHHHH
Q 000426 683 LEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 683 ~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
... .|++..|+.||+.+++ ++|++|+||||||+|+++.||+.|
T Consensus 633 ~~~-~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 633 IAS-QDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cCC-CCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 433 4788999999998876 489999999999999999999875
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=8.1e-180 Score=1689.35 Aligned_cols=653 Identities=40% Similarity=0.698 Sum_probs=611.0
Q ss_pred CcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Q 000426 64 GVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRA 143 (1525)
Q Consensus 64 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 143 (1525)
|+|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++.+.+++||||||||+.||+.
T Consensus 2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEE
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~ 223 (1525)
|...++||||||||||||||||++|++|+|||.+++.. ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~ 157 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIF 157 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEE
Confidence 99999999999999999999999999999999987532 256999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHH
Q 000426 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302 (1525)
Q Consensus 224 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 302 (1525)
|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++++|+++|..
T Consensus 158 f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (677)
T cd01387 158 LE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRR 236 (677)
T ss_pred ec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHH
Confidence 95 7999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCC--CCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeec
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE--VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMIT 380 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~--~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 380 (1525)
|+.||++|||+++++.+||+|||||||||||+|..... .+.+.+.+ ...+..||+|||||+++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 313 (677)
T cd01387 237 LLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTET 313 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEEe
Confidence 99999999999999999999999999999999986532 22344433 34799999999999999999999999999
Q ss_pred CCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh----
Q 000426 381 PEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS---- 456 (1525)
Q Consensus 381 ~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya---- 456 (1525)
++|.+.+|+++++|.++||||||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||| |||||
T Consensus 314 ~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQL-cINyaNEkL 391 (677)
T cd01387 314 RREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQL-CINYANENL 391 (677)
T ss_pred CCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHH-HhHHHHHHH
Confidence 99999999999999999999999999999999999999999874 4567999999999999999999999 99999
Q ss_pred ---hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCcccC
Q 000426 457 ---CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVKP 533 (1525)
Q Consensus 457 ---fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~p 533 (1525)
||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|+|||++|++|++..+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCccc--------c---cCCCCCcchhH
Q 000426 534 KFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEE--------T---SKSSKFSSIGS 602 (1525)
Q Consensus 534 ~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~--------~---~~~~~~~tv~~ 602 (1525)
+.+.+.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... + .+..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999653110 0 11224679999
Q ss_pred HHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhccccccc
Q 000426 603 RFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682 (1525)
Q Consensus 603 ~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 682 (1525)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||||||+|+|||+|++|.+|++||++|+|..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccCCccHHHHHHHHHHHhCC--CCeeeccceeeccchHHHHHHHHH
Q 000426 683 LEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 683 ~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
.....+.+..+..++..+++ +.|+||+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 43332334555788887765 479999999999999999999876
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.9e-179 Score=1687.80 Aligned_cols=656 Identities=38% Similarity=0.641 Sum_probs=615.5
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCC-CCCCCchHHHHHHHHH
Q 000426 63 GGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAP-FGELSPHVFAVADVAY 141 (1525)
Q Consensus 63 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~-~~~~~PHifavA~~Ay 141 (1525)
.++|||+.|++||||+|||+|+.||..++||||+|+||||||||+.+| +|+++.++.|++.. .+++|||||+||+.||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999998 99999999999887 7899999999999999
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEE
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 221 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~ 221 (1525)
+.|..+++||||||||||||||||++|++|+|||.+++... .+.+|+++|+++||||||||||||+|||||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 99999999999999999999999999999999999975432 23679999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHH
Q 000426 222 IQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDY 300 (1525)
Q Consensus 222 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 300 (1525)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.+.|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7899999999988889999999998877899999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCC---CCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhce
Q 000426 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE---VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRI 377 (1525)
Q Consensus 301 ~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~---~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~ 377 (1525)
..|+.||++|||++++++.||+|||||||||||+|.+..+ .+++.+.+ ...+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999987432 34444443 35799999999999999999999999
Q ss_pred eecCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCC---CCceEEeecccccccccC-CCCCcchhh
Q 000426 378 MITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPN---SKSLIGVLDIYGFESFKS-NSKTPLICF 453 (1525)
Q Consensus 378 ~~~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~---~~~~IgiLDI~GFE~f~~-NsfEQl~cI 453 (1525)
+.+++|.+++|+++++|.++||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+. |||||| ||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQL-cI 400 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQL-CI 400 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHH-hh
Confidence 9999999999999999999999999999999999999999999986542 467999999999999999 999999 99
Q ss_pred hhh-------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcC
Q 000426 454 IIS-------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKS 526 (1525)
Q Consensus 454 Nya-------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~ 526 (1525)
||| ||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~ 480 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD 480 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCccccc---------CCCCC
Q 000426 527 HKRFVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETS---------KSSKF 597 (1525)
Q Consensus 527 ~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~ 597 (1525)
|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+.... ++.+.
T Consensus 481 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~ 560 (692)
T cd01385 481 NKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAA 560 (692)
T ss_pred CCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccC
Confidence 999999988888999999999999999999999999999999999999999999999975433211 12234
Q ss_pred cchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcc
Q 000426 598 SSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGL 677 (1525)
Q Consensus 598 ~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 677 (1525)
+||+++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++
T Consensus 561 ~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~ 640 (692)
T cd01385 561 PSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRI 640 (692)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccHHHHHHHHHHHhCCC--CeeeccceeeccchHHHHHHHHHH
Q 000426 678 LAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELDARRA 727 (1525)
Q Consensus 678 l~~~~~~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R~ 727 (1525)
|+|... .+.++.|+.||+.++++ +|+||+||||||+++++.||....
T Consensus 641 L~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 641 LLPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred hCcccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 998643 23467799999998874 899999999999999999997654
No 13
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-179 Score=1556.08 Aligned_cols=722 Identities=38% Similarity=0.672 Sum_probs=670.3
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHH
Q 000426 62 AGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAY 141 (1525)
Q Consensus 62 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 141 (1525)
..|++|++-|+.+.|++++.||+.||..+.||||+|+|||+||||+.|+ ||+++.|++|+|..+-+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 3689999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccC-CccHHHHHhhhchHHHhhcCcccccCCCCCcccceE
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATE-GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 220 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~-~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i 220 (1525)
+.|.+.++||||+|||||||||||++|+||+|+|++.+.+... -..|.+++|+|||||||||||||.|||||||||||+
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 9999999999999999999999999999999999998755432 246778999999999999999999999999999999
Q ss_pred EEEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCC-CCCCCcccCCCCcccccCCCcHH
Q 000426 221 EIQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLG-NPKTFHYLNQSTCFELVGVSDAH 298 (1525)
Q Consensus 221 ~l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~-~~~~~~yl~~~~~~~~~~~~d~~ 298 (1525)
.|.||-.|..+|+.|.+|||||||||.|.+|||||||||||+. +++++...|+|. ++..|+||++| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 888889999995 78999999998 78899999999
Q ss_pred HHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000426 299 DYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIM 378 (1525)
Q Consensus 299 ~f~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 378 (1525)
+|..++.||.++||+++|+.++|+|+|||||||||+|.++. |++.+... ..+..+|+||++.+++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 45544433 47999999999999999999999999
Q ss_pred ecCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCC-----CCCceEEeecccccccccCCCCCcchhh
Q 000426 379 ITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDP-----NSKSLIGVLDIYGFESFKSNSKTPLICF 453 (1525)
Q Consensus 379 ~~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-----~~~~~IgiLDI~GFE~f~~NsfEQl~cI 453 (1525)
.+++|.+.++++++||..+||||||+||+|||+|||.+||+++.... .+...||||||||||+|+.|||||| ||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQf-cI 398 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQF-CI 398 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHH-HH
Confidence 99999999999999999999999999999999999999999996431 2357899999999999999999999 99
Q ss_pred hhh-------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCC-CchHHHHHHHHHHhc
Q 000426 454 IIS-------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFANKLYQTFK 525 (1525)
Q Consensus 454 Nya-------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~-~td~~~~~kl~~~~~ 525 (1525)
||+ |.+-+.|.|||||.+|||+|+.|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.++
T Consensus 399 NYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~ 478 (1001)
T KOG0164|consen 399 NYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLK 478 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhh
Confidence 999 999999999999999999999999999999999999999999999999999995 699999999999999
Q ss_pred CCCCcccCCC-------CCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCccccc-CCCCC
Q 000426 526 SHKRFVKPKF-------SRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETS-KSSKF 597 (1525)
Q Consensus 526 ~~~~f~~p~~-------~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-~~~~~ 597 (1525)
+|++|...+. .-.+|.|.||||+|+|++.||++||+|.+..|+-.+|.+|+++++++||+....+-. ...+.
T Consensus 479 ~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP 558 (1001)
T KOG0164|consen 479 KHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRP 558 (1001)
T ss_pred hCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCC
Confidence 9999975432 346899999999999999999999999999999999999999999999986433222 22367
Q ss_pred cchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcc
Q 000426 598 SSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGL 677 (1525)
Q Consensus 598 ~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 677 (1525)
.|.|++||.|+..||+.|.+-+|+||||||||+.|.|+.||..+|.+|.+|.|+||-+|++|+||.+|.+|+.|+.||++
T Consensus 559 ~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKm 638 (1001)
T KOG0164|consen 559 PTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKM 638 (1001)
T ss_pred CcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC--CccHHHHHHHHHHHhCCC-CeeeccceeeccchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 678 LAPEFLEG--NYDEKVACKKILEKKGLQ-GFQIGKTKIFLRAGQ-MAELDARRAEILSSAAKTIQRRIRTHIARRRFIAL 753 (1525)
Q Consensus 678 l~~~~~~~--~~~~~~~~~~il~~~~~~-~~~~G~TkVF~r~~~-~~~LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y~~~ 753 (1525)
+++..+.. ..++++.|..|++..+.. ++.+|+||||+|.+. +..||..|.+.+...++.||+.||||++|.+|+++
T Consensus 639 i~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rm 718 (1001)
T KOG0164|consen 639 ICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRM 718 (1001)
T ss_pred hCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875532 235799999999999874 899999999999965 58899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000426 754 REATIVLQSLCRGRLACRVFDSMKKEAAAVKIQKHIRRYDARTAYKRL 801 (1525)
Q Consensus 754 r~aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQk~~R~~~~Rr~y~~~ 801 (1525)
+.+++.|+ +||.+ +...++..||+.+|||+.++.|.+-
T Consensus 719 ka~~~ii~-wyR~~---------K~ks~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 719 KASATIIR-WYRRY---------KLKSYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHH-HHHHH---------HHHHHHHHHHHHHHhhhhccccCCC
Confidence 99999999 88844 2335777899999999999998653
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.1e-179 Score=1693.28 Aligned_cols=656 Identities=40% Similarity=0.694 Sum_probs=612.2
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHH
Q 000426 62 AGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAY 141 (1525)
Q Consensus 62 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 141 (1525)
|.++|||+.|++||||+|||||+.||..+.||||+|+||||||||+.+|++|+++.++.|+++..+++||||||||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEE
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 221 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~ 221 (1525)
+.|...++||||||||||||||||++|++|+|||.+++++ .+|+++|+++||||||||||||+|||||||||||++
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 158 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVE 158 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEE
Confidence 9999999999999999999999999999999999886542 579999999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCC-------------
Q 000426 222 IQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQST------------- 287 (1525)
Q Consensus 222 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~------------- 287 (1525)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 159 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~ 238 (717)
T cd01382 159 IHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQI 238 (717)
T ss_pred EEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccc
Confidence 999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred -------------cccccCCCcHHHHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCC-CCCcccCCchhHH
Q 000426 288 -------------CFELVGVSDAHDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE-VDSSIPKDDQAKF 353 (1525)
Q Consensus 288 -------------~~~~~~~~d~~~f~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~-~d~~~~~~~~~~~ 353 (1525)
|..++++||+++|.+|+.||++|||+++++..||+|||||||||||+|.+..+ .+.|.+.+ .+..
T Consensus 239 ~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~ 317 (717)
T cd01382 239 LQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQ 317 (717)
T ss_pred cccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHH
Confidence 33467899999999999999999999999999999999999999999987432 23343332 2446
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhceee-----cCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCC
Q 000426 354 HLKTAAELLMCDPVALEDALCKRIMI-----TPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSK 428 (1525)
Q Consensus 354 ~l~~~a~LLgv~~~~L~~~L~~r~~~-----~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~ 428 (1525)
.+..||.||||++++|.++||+|++. ++++.+.+|++++||.++||+|||+||++||+|||.+||.+|..+. +.
T Consensus 318 ~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~~ 396 (717)
T cd01382 318 SLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-SS 396 (717)
T ss_pred HHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC
Confidence 89999999999999999999999998 6789999999999999999999999999999999999999997653 56
Q ss_pred ceEEeecccccccccCCCCCcchhhhhh-------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceec
Q 000426 429 SLIGVLDIYGFESFKSNSKTPLICFIIS-------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIAL 501 (1525)
Q Consensus 429 ~~IgiLDI~GFE~f~~NsfEQl~cINya-------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~l 501 (1525)
.+||||||||||+|+.|||||| ||||| ||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQL-cINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQF-CINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred cEEEEEeccccccCCCCCHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 7999999999999999999999 99999 999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCchHHHHHHHHHHhcCCCCcccCCCC----------CCCeEEEecccceeecccCchhhhcCCCcHHHHHH
Q 000426 502 LDEACMFPKSTHETFANKLYQTFKSHKRFVKPKFS----------RTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDL 571 (1525)
Q Consensus 502 Ldee~~~p~~td~~~~~kl~~~~~~~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~l 571 (1525)
|||||++|+|||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~l 555 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESL 555 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHH
Confidence 99999999999999999999999999988877532 35899999999999999999999999999999999
Q ss_pred HhhCCchhHhhcCCCCcccc---c--CCCCCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhh
Q 000426 572 LSASNCPFVAGLFPPLPEET---S--KSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQL 646 (1525)
Q Consensus 572 l~~S~~~~v~~lf~~~~~~~---~--~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QL 646 (1525)
|+.|++++|+.||+...... . ++.++.||+++||.||+.||++|++|+||||||||||+.|+|+.||...|++||
T Consensus 556 l~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QL 635 (717)
T cd01382 556 ICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQL 635 (717)
T ss_pred HHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHH
Confidence 99999999999997643211 1 122567999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHhhCCCCcCChHHHHHhhcccccccccCCccHHHHHHHHHHHhCCC--CeeeccceeeccchHHHHHHH
Q 000426 647 RCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELDA 724 (1525)
Q Consensus 647 r~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~ 724 (1525)
||+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|+++.|+.||+.++++ +|+||+||||||+|+++.||+
T Consensus 636 r~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~ 714 (717)
T cd01382 636 QCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQ 714 (717)
T ss_pred HhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHH
Confidence 99999999999999999999999999999999886543 348899999999998764 899999999999999999997
Q ss_pred H
Q 000426 725 R 725 (1525)
Q Consensus 725 ~ 725 (1525)
+
T Consensus 715 ~ 715 (717)
T cd01382 715 I 715 (717)
T ss_pred H
Confidence 5
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.5e-176 Score=1525.31 Aligned_cols=776 Identities=38% Similarity=0.655 Sum_probs=702.1
Q ss_pred cCcEEEEeCCCCCeEeEEEEEEcCCeEEEEe--cCCcEEEEecCccccCCCCCCCCCcccccCCCCCChHHHHHHHHHHh
Q 000426 10 VGSHVWVEDPEEAWIDGQVLKITGKDVEVQT--TKGKKVVANLSKIYPKDMEEPAGGVDDMTKLSYLHEPGVLRNLKTRY 87 (1525)
Q Consensus 10 ~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vL~~L~~Ry 87 (1525)
-|-.||++|+.++|+.|.|+.++.+..++.. ..|.+++.-.+++++...+ ++..+||-+.|-||||+.+|+|++.||
T Consensus 3 ~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~RY 81 (1259)
T KOG0163|consen 3 DGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLRY 81 (1259)
T ss_pred CCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhhh
Confidence 4889999999999999999999888888864 4588888888889987554 567899999999999999999999999
Q ss_pred hcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHH
Q 000426 88 ELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETT 167 (1525)
Q Consensus 88 ~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 167 (1525)
..|.||||+.+||||||||..+|.+|+++.+..|+|+++|.+||||||||+.|||.|..-+.+|||||||||||||||++
T Consensus 82 ~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 82 YKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred ccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEEecCCCcccceeeeeeeccCccccc
Q 000426 168 KMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQ 247 (1525)
Q Consensus 168 k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~f~~~g~i~Ga~i~~yLLEksRvv~ 247 (1525)
|++++||+..-|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-++.||||||||+.
T Consensus 162 K~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~ 237 (1259)
T KOG0163|consen 162 KAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICR 237 (1259)
T ss_pred HHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHH
Confidence 9999999987554 356999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCC--------------------------cccccCCCcHHHH
Q 000426 248 ISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQST--------------------------CFELVGVSDAHDY 300 (1525)
Q Consensus 248 q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~--------------------------~~~~~~~~d~~~f 300 (1525)
|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|- ...-+-+||-.+|
T Consensus 238 Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF 317 (1259)
T KOG0163|consen 238 QAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDF 317 (1259)
T ss_pred hhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHH
Confidence 9999999999999999 899999999999999999998541 1112237899999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCC--CCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000426 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE--VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIM 378 (1525)
Q Consensus 301 ~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~--~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 378 (1525)
..+..||..+|++++|...||+++|||||||||+|.+..+ ..+|.+.+ .+...|..+|+|||+|.++|.-.||.|+|
T Consensus 318 ~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRvM 396 (1259)
T KOG0163|consen 318 HRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARVM 396 (1259)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987542 34466654 45668999999999999999999999998
Q ss_pred ecC-----CceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhh
Q 000426 379 ITP-----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICF 453 (1525)
Q Consensus 379 ~~~-----~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cI 453 (1525)
.+. |-.|.+||.+.+|.++||||||+||++||||||.+||+++.- ..+..|||||||.|||-|.+|||||| ||
T Consensus 397 qtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPF-e~St~fiGVLDiAGFEyf~~NSFEQF-CI 474 (1259)
T KOG0163|consen 397 QTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPF-EKSTFFIGVLDIAGFEYFAVNSFEQF-CI 474 (1259)
T ss_pred HhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccc-ccccceeEEEeeccceeeecccHHHH-HH
Confidence 753 357889999999999999999999999999999999999954 35788999999999999999999999 99
Q ss_pred hhh-------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcC
Q 000426 454 IIS-------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKS 526 (1525)
Q Consensus 454 Nya-------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~ 526 (1525)
||+ ||+.+.+.|||.|.+||+....|+|.|||+||+|||.|..|||+|||||.++|+.|++.|....+..+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCC----------CCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccC---
Q 000426 527 HKRFVKPKFS----------RTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSK--- 593 (1525)
Q Consensus 527 ~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~--- 593 (1525)
|-+...|+.+ ...|.|+||||.|.|.+..|+|||.|.+...+..|+..|+++++.+||+.....+.+
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888888643 347999999999999999999999999999999999999999999999875433222
Q ss_pred -CCCCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHH
Q 000426 594 -SSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFL 672 (1525)
Q Consensus 594 -~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~ 672 (1525)
+-++-|||.+||.||..||+.|++|..|||||||||..+.|+.||...++.||.|+|+...+++...|||+|.+|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 1267899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCccHHHHHHHHHHHhCCC--CeeeccceeeccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000426 673 NRFGLLAPEFLEGNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELDARRAEILSSAAKTIQRRIRTHIARRRF 750 (1525)
Q Consensus 673 ~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y 750 (1525)
.-|+-.+|..+.. .|++-.|+.+...+|++ +|+||.||||||+|.++..+.+....-...+..|++ +..|+.|.+|
T Consensus 715 amYkk~lPpkLar-LdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLAR-LDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhhc-CChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 9999888876543 58999999999999986 899999999999999999999876666666555554 7889999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000426 751 IALREATIVLQSLCRGRLACRVFDSMKKEAAAVKIQKHIRRYDARTAYKRLHV 803 (1525)
Q Consensus 751 ~~~r~aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQk~~R~~~~Rr~y~~~r~ 803 (1525)
.+...++..+-..-- +-.-|.++++++|+.+|||++|+++.....
T Consensus 793 kk~q~~a~sVIKLkN--------kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLKN--------KIIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHhhhhhhheeehhh--------HHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 888776654432111 112245688999999999999999876543
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=5.8e-177 Score=1654.69 Aligned_cols=632 Identities=38% Similarity=0.683 Sum_probs=595.8
Q ss_pred CcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Q 000426 64 GVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRA 143 (1525)
Q Consensus 64 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 143 (1525)
.+|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|+++.++.|.++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEE
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~ 223 (1525)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999887532 357999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhH-HhcCCCCCCCCcccCCCCcccccCCCc----H
Q 000426 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEV-ERYKLGNPKTFHYLNQSTCFELVGVSD----A 297 (1525)
Q Consensus 224 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~-~~~~L~~~~~~~yl~~~~~~~~~~~~d----~ 297 (1525)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++| +
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 565554 789999999999999999887787764 6
Q ss_pred HHHHHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCC---CCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHh
Q 000426 298 HDYLATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKE---VDSSIPKDDQAKFHLKTAAELLMCDPVALEDALC 374 (1525)
Q Consensus 298 ~~f~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~---~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~ 374 (1525)
++|.+|+.||++|||++++++.||+|||||||||||+|.+... .+.+.+.+ ..++..||+|||||.++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8899999999999999999999999999999999999986432 22333333 45799999999999999999999
Q ss_pred hceeecCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCC-----CCceEEeecccccccccCCCCCc
Q 000426 375 KRIMITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPN-----SKSLIGVLDIYGFESFKSNSKTP 449 (1525)
Q Consensus 375 ~r~~~~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDI~GFE~f~~NsfEQ 449 (1525)
++++.++++++++|+++++|.++||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999987543 35799999999999999999999
Q ss_pred chhhhhh-------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHH
Q 000426 450 LICFIIS-------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQ 522 (1525)
Q Consensus 450 l~cINya-------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~ 522 (1525)
| ||||| ||+|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++.
T Consensus 394 L-cINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~ 472 (653)
T cd01379 394 L-CINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFED 472 (653)
T ss_pred H-HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 9 99999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhH
Q 000426 523 TFKSHKRFVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGS 602 (1525)
Q Consensus 523 ~~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~ 602 (1525)
.++ ++.|.+|+.....|+|+||||+|+|+++||++||||.++++++++|+.| +||++
T Consensus 473 ~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~ 529 (653)
T cd01379 473 NLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVAS 529 (653)
T ss_pred hcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHH
Confidence 885 4678899888899999999999999999999999999999999999887 48999
Q ss_pred HHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhccccccc
Q 000426 603 RFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEF 682 (1525)
Q Consensus 603 ~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~ 682 (1525)
+||.||++||++|++|+||||||||||+.|+|+.||+..|++||||+||||+|||+|+|||+|++|.+|+.||++|++..
T Consensus 530 ~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~ 609 (653)
T cd01379 530 YFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRF 609 (653)
T ss_pred HHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCccHHHHHHHHHHHhCCCCeeeccceeeccchHHHHHHHHH
Q 000426 683 LEGNYDEKVACKKILEKKGLQGFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 683 ~~~~~~~~~~~~~il~~~~~~~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
.....+.++.|+.||..++.++|+|||||||||+++++.||.+|
T Consensus 610 ~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 610 EEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 44445789999999999999999999999999999999999865
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3.1e-175 Score=1658.47 Aligned_cols=659 Identities=53% Similarity=0.882 Sum_probs=623.9
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHH
Q 000426 63 GGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYR 142 (1525)
Q Consensus 63 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 142 (1525)
.+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++.++.|+++..+++|||||+||++||+
T Consensus 6 ~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 84 (677)
T smart00242 6 EGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAYR 84 (677)
T ss_pred CCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEE
Q 000426 143 AMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 222 (1525)
Q Consensus 143 ~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l 222 (1525)
.|...++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++|
T Consensus 85 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l 163 (677)
T smart00242 85 NMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEI 163 (677)
T ss_pred HHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEE
Confidence 9999999999999999999999999999999999986532 346799999999999999999999999999999999999
Q ss_pred EecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHH
Q 000426 223 QFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYL 301 (1525)
Q Consensus 223 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~ 301 (1525)
+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..++++||+++|.
T Consensus 164 ~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 243 (677)
T smart00242 164 HFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFK 243 (677)
T ss_pred EECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred HHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCc-ccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeec
Q 000426 302 ATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSS-IPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMIT 380 (1525)
Q Consensus 302 ~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 380 (1525)
+|+.||+.|||+++++.+||+|||||||||||+|....+.++. .+. +...++.||.||||+.++|.++|+++++.+
T Consensus 244 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 244 ETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 9999999999999999999999999999999999875432222 222 345799999999999999999999999999
Q ss_pred CCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh----
Q 000426 381 PEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS---- 456 (1525)
Q Consensus 381 ~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya---- 456 (1525)
++|.+++++++++|.++||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||| |||||
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQL-cINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQL-CINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHH-HhHhhHHHH
Confidence 9999999999999999999999999999999999999999998777889999999999999999999999 99999
Q ss_pred ---hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCcccC
Q 000426 457 ---CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVKP 533 (1525)
Q Consensus 457 ---fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~p 533 (1525)
||+|+|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHHHHHH
Q 000426 534 K-FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLM 612 (1525)
Q Consensus 534 ~-~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm 612 (1525)
+ ..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+..||+++||.||+.||
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~ 559 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLM 559 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHH
Confidence 5 457899999999999999999999999999999999999999999999998655433334477899999999999999
Q ss_pred HHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccccC-CccHHH
Q 000426 613 DTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEG-NYDEKV 691 (1525)
Q Consensus 613 ~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~ 691 (1525)
++|++|+||||||||||+.|+|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..|+++
T Consensus 560 ~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~ 639 (677)
T smart00242 560 DTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKE 639 (677)
T ss_pred HHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875432 346899
Q ss_pred HHHHHHHHhCC--CCeeeccceeeccchHHHHHHHHHH
Q 000426 692 ACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARRA 727 (1525)
Q Consensus 692 ~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R~ 727 (1525)
.|+.||+.+++ ++|++|+||||||++++..||++|.
T Consensus 640 ~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 640 ACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999864 5899999999999999999999873
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2e-173 Score=1647.12 Aligned_cols=655 Identities=50% Similarity=0.832 Sum_probs=614.7
Q ss_pred CcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Q 000426 64 GVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRA 143 (1525)
Q Consensus 64 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 143 (1525)
|++||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|+++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEE
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~ 223 (1525)
|..+++||||||||||||||||++|++|+||+.++++. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 356999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHH
Q 000426 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302 (1525)
Q Consensus 224 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 302 (1525)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999998899999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCC--cccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeec
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDS--SIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMIT 380 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 380 (1525)
++.||++|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.||.||||+.++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987544332 3333 345799999999999999999999999999
Q ss_pred CCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccCCCCCcchhhhhh----
Q 000426 381 PEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKSNSKTPLICFIIS---- 456 (1525)
Q Consensus 381 ~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQl~cINya---- 456 (1525)
++|.+++++++++|..+||+|||+||++||+|||.+||.+|.+......+||||||||||+|+.|||||| |||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQL-cINy~NEkL 392 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQL-CINYANEKL 392 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHH-hcccchHHH
Confidence 9999999999999999999999999999999999999999998767788999999999999999999999 99999
Q ss_pred ---hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCCccc-
Q 000426 457 ---CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKRFVK- 532 (1525)
Q Consensus 457 ---fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~f~~- 532 (1525)
||+|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.|++|++|..
T Consensus 393 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~ 472 (679)
T cd00124 393 QQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPA 472 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred CCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCccc-----------ccCCCCCcchh
Q 000426 533 PKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEE-----------TSKSSKFSSIG 601 (1525)
Q Consensus 533 p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~ 601 (1525)
|+..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+..||+
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 552 (679)
T cd00124 473 KKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVG 552 (679)
T ss_pred CCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHH
Confidence 4456789999999999999999999999999999999999999999999999763221 11223678999
Q ss_pred HHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccc
Q 000426 602 SRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPE 681 (1525)
Q Consensus 602 ~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~ 681 (1525)
++|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.
T Consensus 553 ~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~ 632 (679)
T cd00124 553 SQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPD 632 (679)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCccHHHHHHHHHHHhCC--CCeeeccceeeccchHHHHHHHHH
Q 000426 682 FLEGNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 682 ~~~~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
........++.|+.++..+++ ++|++|+||||||++++..||.+|
T Consensus 633 ~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 633 LLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred cccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 654332334449999998876 489999999999999999999865
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.7e-173 Score=1639.98 Aligned_cols=653 Identities=31% Similarity=0.478 Sum_probs=585.5
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Q 000426 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAM 144 (1525)
Q Consensus 65 ~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 144 (1525)
||||+.|++||||+|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEEe
Q 000426 145 VNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQF 224 (1525)
Q Consensus 145 ~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~f 224 (1525)
..+++||||||||||||||||+||+||+|||.+++..+ +....++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~--~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVD--GRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCC--cccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 99999999999999999999999999999999876433 1222357999999999999999999999999999999999
Q ss_pred cCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCC-cccccCCCcHHHHHH
Q 000426 225 DKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQST-CFELVGVSDAHDYLA 302 (1525)
Q Consensus 225 ~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~-~~~~~~~~d~~~f~~ 302 (1525)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++..+.+.+.+. +...++++|+++|.+
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765543333322 334678999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCC
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE 382 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 382 (1525)
|+.||++|||+++++..||+|||||||||||+|.+.. +.+.+.+ .+.++.||.||||+.++|.++|+++++.++.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 3479999999999999999999998876553
Q ss_pred c-------------eEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCceEEeecccccccccC-----
Q 000426 383 E-------------VIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSLIGVLDIYGFESFKS----- 444 (1525)
Q Consensus 383 e-------------~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~----- 444 (1525)
+ .++.++++.+|.++||||||+||++||+|||.+||.+|.++..+..+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678899999999999999999999999999999998766678999999999999984
Q ss_pred -CCCCcchhhhhh-------hhhhhhhhhHhhhhhcCcccccccc-cChHHHHHHHhcCC--------------Ccceec
Q 000426 445 -NSKTPLICFIIS-------CCAHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEKKP--------------GGIIAL 501 (1525)
Q Consensus 445 -NsfEQl~cINya-------fn~~vF~~eq~ey~~E~I~w~~i~f-~Dn~~~ldlie~~~--------------~Gil~l 501 (1525)
|||||| ||||| ||+|||+.||+||.+|||+|+++++ .||++|||||+++| .|||++
T Consensus 394 ~NsfEQL-cINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~l 472 (767)
T cd01386 394 AATFEEL-CHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWL 472 (767)
T ss_pred CCCHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhh
Confidence 899999 99999 9999999999999999999997665 79999999999865 599999
Q ss_pred chhhhcCCCCchHHHHHHHHHHhcCCCCcccCC--C----CCCCeEEEecccc--eeecccCchhhhcCCC-cHHHHHHH
Q 000426 502 LDEACMFPKSTHETFANKLYQTFKSHKRFVKPK--F----SRTDFAIAHYAGE--VMYQSDQFLDKNKDYV-VPEHQDLL 572 (1525)
Q Consensus 502 Ldee~~~p~~td~~~~~kl~~~~~~~~~f~~p~--~----~~~~F~I~Hyag~--V~Y~~~gfleKN~D~~-~~~~~~ll 572 (1525)
|||||++|+|||++|++||++.|++|++|.+++ . ....|+|+||||. |+|+++||+|||||.+ +.+++++|
T Consensus 473 LDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll 552 (767)
T cd01386 473 LDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLL 552 (767)
T ss_pred hhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHH
Confidence 999999999999999999999999998887632 1 2468999999995 9999999999999976 58999999
Q ss_pred hhCCchhHhhcCCCCcc-------------ccc----------C--------CCCCcchhHHHHHHHHHHHHHHccCCCe
Q 000426 573 SASNCPFVAGLFPPLPE-------------ETS----------K--------SSKFSSIGSRFKLQLQQLMDTLNSTEPH 621 (1525)
Q Consensus 573 ~~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~L~~Lm~~l~~t~~h 621 (1525)
+.|++++|..||+.... ..+ + ..+.+|||++||.||+.||++|++|+||
T Consensus 553 ~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~ph 632 (767)
T cd01386 553 QDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLH 632 (767)
T ss_pred HhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999964210 000 0 0134589999999999999999999999
Q ss_pred eeeccCCCCCCC----------------------CccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccc
Q 000426 622 YIRCVKPNNLLK----------------------PAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLA 679 (1525)
Q Consensus 622 fIrCIkPN~~k~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~ 679 (1525)
||||||||+.|+ |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|+
T Consensus 633 fIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~ 712 (767)
T cd01386 633 FVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLA 712 (767)
T ss_pred eEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhC
Confidence 999999999974 7899999999999999999999999999999999999999999998
Q ss_pred ccccc------CCccHHHHHHHHHHHhCCC--CeeeccceeeccchHHHHHHHHH
Q 000426 680 PEFLE------GNYDEKVACKKILEKKGLQ--GFQIGKTKIFLRAGQMAELDARR 726 (1525)
Q Consensus 680 ~~~~~------~~~~~~~~~~~il~~~~~~--~~~~G~TkVF~r~~~~~~LE~~R 726 (1525)
+.... ...|++++|+.||+.++++ +|+||+||||||+|+++.||+.|
T Consensus 713 ~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 713 EGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 86431 2358899999999998764 89999999999999999999876
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.5e-173 Score=1504.30 Aligned_cols=687 Identities=39% Similarity=0.676 Sum_probs=641.9
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHH
Q 000426 62 AGGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAY 141 (1525)
Q Consensus 62 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay 141 (1525)
..|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+++| +|++..|..|+|+..-+.||||||+|+.+|
T Consensus 17 ~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 17 HVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 3699999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEE
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 221 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~ 221 (1525)
++|..+.+||||||||||||||||+||+||+|++.+|+. +..-..|.+-||++||+|||||||||+||+||||||||+|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~E 174 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLE 174 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEE
Confidence 999999999999999999999999999999999999853 4444678889999999999999999999999999999999
Q ss_pred EEecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHH
Q 000426 222 IQFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDY 300 (1525)
Q Consensus 222 l~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 300 (1525)
|+|+..|..+|++|.+|||||||||.|.++||||||||||++ |+.+.|..|++..|+.|.||+.++|+.++++||..+|
T Consensus 175 i~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdf 254 (1106)
T KOG0162|consen 175 IQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDF 254 (1106)
T ss_pred EEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeec
Q 000426 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMIT 380 (1525)
Q Consensus 301 ~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 380 (1525)
++|..||.++|+.++||+.||++||+|||||||.|.+.. ..+.+.+. ..++-.|.|||||...|++.||.|.|.+
T Consensus 255 q~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~s 329 (1106)
T KOG0162|consen 255 QETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIMES 329 (1106)
T ss_pred HHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998733 23334333 3689999999999999999999999875
Q ss_pred C----CceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCC-CCceEEeecccccccccCCCCCcchhhhh
Q 000426 381 P----EEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPN-SKSLIGVLDIYGFESFKSNSKTPLICFII 455 (1525)
Q Consensus 381 ~----~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDI~GFE~f~~NsfEQl~cINy 455 (1525)
. .|++..||+++||...||||||+||.+||||||++||.++...+. ...+||||||||||+|+.|||||| ||||
T Consensus 330 ~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~-CINf 408 (1106)
T KOG0162|consen 330 KWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQF-CINF 408 (1106)
T ss_pred cccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHH-HHHH
Confidence 3 589999999999999999999999999999999999999985443 467899999999999999999999 9999
Q ss_pred h-------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhc-CCCcceecchhhhcCC----CCchHHHHHHHHHH
Q 000426 456 S-------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFANKLYQT 523 (1525)
Q Consensus 456 a-------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~-~~~Gil~lLdee~~~p----~~td~~~~~kl~~~ 523 (1525)
. |.+-++|.|||||.+|||.|++|+|.||.-|+||||. .|.||+++|||.|.-. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999996 4779999999999854 46799999999999
Q ss_pred hcCCCCcccCCCCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcccccCCCCCcchhHH
Q 000426 524 FKSHKRFVKPKFSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETSKSSKFSSIGSR 603 (1525)
Q Consensus 524 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 603 (1525)
+++||+|.. ....|+|+||||+|+||++||.+||||.|..|+++|+..|+++|++.||+...+.. ++.+.+|.|++
T Consensus 489 ~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGDK 564 (1106)
T ss_pred hcCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchhh
Confidence 999999984 45789999999999999999999999999999999999999999999998754443 34477899999
Q ss_pred HHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcccccccc
Q 000426 604 FKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFL 683 (1525)
Q Consensus 604 f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~ 683 (1525)
.+.|.++|++||..|.||||||||||+.|.|+.||..+|++|+.|.|+=|-|||+|+||.+|..|+-|++||.+|.|..+
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred c-CCccHHHHHHHHHHHhCC--CCeeeccceeeccch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 684 E-GNYDEKVACKKILEKKGL--QGFQIGKTKIFLRAG-QMAELDARRAEILSSAAKTIQRRIRTHIARRRFIALREATIV 759 (1525)
Q Consensus 684 ~-~~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r~~-~~~~LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y~~~r~aai~ 759 (1525)
. +..|++.+|+.||+.... ++||+|.||||++.. .+..||.+|.......|..||+.||.|++||+|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 346899999999998755 589999999999985 568899999999999999999999999999999999976554
Q ss_pred H
Q 000426 760 L 760 (1525)
Q Consensus 760 I 760 (1525)
+
T Consensus 725 l 725 (1106)
T KOG0162|consen 725 L 725 (1106)
T ss_pred H
Confidence 3
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=4.9e-165 Score=1589.73 Aligned_cols=646 Identities=46% Similarity=0.820 Sum_probs=572.4
Q ss_pred cccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Q 000426 65 VDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAM 144 (1525)
Q Consensus 65 ~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 144 (1525)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||++||+.|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCc-cCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEEE
Q 000426 145 VNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTA-TEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 223 (1525)
Q Consensus 145 ~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~-~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l~ 223 (1525)
.++++||||||||||||||||++|++|+||+.++.+.. .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred ecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccccCCCcHHHHHH
Q 000426 224 FDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFELVGVSDAHDYLA 302 (1525)
Q Consensus 224 f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 302 (1525)
||.+|.++||+|.+||||||||+.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999998 888899999999999999999999999999999999999
Q ss_pred HHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCCCCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhceeecCC
Q 000426 303 TRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGKEVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIMITPE 382 (1525)
Q Consensus 303 ~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 382 (1525)
++.||++|||+++++.+||+|||||||||||+|....+.+.+.+.+. ..++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999998765455555543 359999999999999999999999999999
Q ss_pred ceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCC-CCCceEEeecccccccccCCCCCcchhhhhh-----
Q 000426 383 EVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDP-NSKSLIGVLDIYGFESFKSNSKTPLICFIIS----- 456 (1525)
Q Consensus 383 e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQl~cINya----- 456 (1525)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..|||||| |||||
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQL-ciNyanErLq 395 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQL-CINYANERLQ 395 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHH-HHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccc-eeeecccccc
Confidence 9999999999999999999999999999999999999999876 6788999999999999999999999 99999
Q ss_pred --hhhhhhhhhHhhhhhcCcccccccc-cChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHh-cCCCCccc
Q 000426 457 --CCAHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTF-KSHKRFVK 532 (1525)
Q Consensus 457 --fn~~vF~~eq~ey~~E~I~w~~i~f-~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~-~~~~~f~~ 532 (1525)
|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|++||++|+++|...+ ++|+.|.+
T Consensus 396 ~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~ 475 (689)
T PF00063_consen 396 QFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVK 475 (689)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEEC
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCcccc
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999 88999999
Q ss_pred CC----CCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCcc--------------c----
Q 000426 533 PK----FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPE--------------E---- 590 (1525)
Q Consensus 533 p~----~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~---- 590 (1525)
|+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.... .
T Consensus 476 ~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 555 (689)
T PF00063_consen 476 PRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQ 555 (689)
T ss_dssp TSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTT
T ss_pred cccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCccccccccccccccccccccccccccccccc
Confidence 86 3678999999999999999999999999999999999999999999999976431 0
Q ss_pred ---ccCCCCCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCC
Q 000426 591 ---TSKSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRP 667 (1525)
Q Consensus 591 ---~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~ 667 (1525)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|++||++.|||+|++
T Consensus 556 ~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~ 635 (689)
T PF00063_consen 556 SRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLT 635 (689)
T ss_dssp SSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEE
T ss_pred ccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecc
Confidence 00112558999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccccccC----CccHHHHHHHHHHHhCC--CCeeeccceeecc
Q 000426 668 FFEFLNRFGLLAPEFLEG----NYDEKVACKKILEKKGL--QGFQIGKTKIFLR 715 (1525)
Q Consensus 668 ~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~~G~TkVF~r 715 (1525)
|.+|++||++|++..... ..+++++|+.||+.+++ +.|++|+||||||
T Consensus 636 ~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 636 FDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999999999976532 36899999999999987 6899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=5.1e-115 Score=1105.49 Aligned_cols=798 Identities=34% Similarity=0.503 Sum_probs=681.4
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhhcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHH
Q 000426 63 GGVDDMTKLSYLHEPGVLRNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYR 142 (1525)
Q Consensus 63 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~ 142 (1525)
.+++||+.|.+++|+.+++||..||..+.||||+|.||++||||+.+|.+|.+..+..|.+++.|++||||||+|+.||+
T Consensus 61 ~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~ 140 (1062)
T KOG4229|consen 61 EDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQ 140 (1062)
T ss_pred ccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhcCcccccCCCCCcccceEEE
Q 000426 143 AMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 222 (1525)
Q Consensus 143 ~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFGNAkT~rN~NSSRfGK~i~l 222 (1525)
.|.+...||||+|||||||||||+|+++++||+.++. .....++++|+.+||+|||||||+|.+|||||||||||++
T Consensus 141 ~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~ 217 (1062)
T KOG4229|consen 141 DMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKV 217 (1062)
T ss_pred hhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEe
Confidence 9999999999999999999999999999999999983 1135688999999999999999999999999999999999
Q ss_pred EecCCCcccceeeeeeeccCccccccCCCCCcceeeeeccC-CCHHhHHhcCCCCCCCCcccCCCCcccc-cCCCcHHHH
Q 000426 223 QFDKQGRISGAAIRTYLLERSRVCQISSPERNYHCFYLLCN-APQEEVERYKLGNPKTFHYLNQSTCFEL-VGVSDAHDY 300 (1525)
Q Consensus 223 ~f~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~-~~~~d~~~f 300 (1525)
.|.+.|.|.||.+.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+++|+||+++.+..+ +|.+|..+|
T Consensus 218 ~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~ 297 (1062)
T KOG4229|consen 218 NFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQF 297 (1062)
T ss_pred ccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhH
Confidence 99999999999999999999999999999999999999999 7778899999999999999999999999 999999999
Q ss_pred HHHHhchhhcccCHHHHHHHHHHHHHHHhhcCeeeecCC--CCCCcccCCchhHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000426 301 LATRRAMDIVGISEKDQEAIFRVVAAILHIGNIEFSKGK--EVDSSIPKDDQAKFHLKTAAELLMCDPVALEDALCKRIM 378 (1525)
Q Consensus 301 ~~~~~Al~~lg~~~~~~~~i~~ilaaILhLGni~f~~~~--~~d~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 378 (1525)
..+..||.++||+.+++.+||+++|||||+|||+|.+-. ..|.+.+.+ ..+++.+|.||+++.+.|.++|+.++.
T Consensus 298 ~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~~~ 374 (1062)
T KOG4229|consen 298 IRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTARVN 374 (1062)
T ss_pred HHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhcccce
Confidence 999999999999999999999999999999999997632 234455544 347999999999999999999999999
Q ss_pred ecCCceEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCC--CCceEEeecccccccccCCCCCcchhhhhh
Q 000426 379 ITPEEVIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPN--SKSLIGVLDIYGFESFKSNSKTPLICFIIS 456 (1525)
Q Consensus 379 ~~~~e~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDI~GFE~f~~NsfEQl~cINya 456 (1525)
++++|.+..+++.++|.++|||+||+||++||+|||.+||..+.++.. +...||||||||||+|+.|||||| |||||
T Consensus 375 ~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~-~in~A 453 (1062)
T KOG4229|consen 375 VTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQL-CINLA 453 (1062)
T ss_pred eeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999987655 368899999999999999999999 99999
Q ss_pred -------hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcCCCCchHHHHHHHHHHhcCCCC
Q 000426 457 -------CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKSHKR 529 (1525)
Q Consensus 457 -------fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~ 529 (1525)
||+|||++||+||..|+|+|..|.|.||++|+|+|..||.||+.+|||||.+|+++|.+++.|+..+++.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccCCC-CCCCeEEEecccceeecccCchhhhcCCCcHHHHHHHhhCCchhHhhcCCCCccccc----------------
Q 000426 530 FVKPKF-SRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLLSASNCPFVAGLFPPLPEETS---------------- 592 (1525)
Q Consensus 530 f~~p~~-~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------------- 592 (1525)
+..|+. ..+.|+|.||||.|.|++.||+|||+|+++.++..++++|.+.++..++...+...+
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 777765 467999999999999999999999999999999999999999999888765332110
Q ss_pred ---------CC-----C---------CCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccch-hhhhhhhc
Q 000426 593 ---------KS-----S---------KFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENA-NIMQQLRC 648 (1525)
Q Consensus 593 ---------~~-----~---------~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~-~v~~QLr~ 648 (1525)
+. + ...+++.+++-++......|.+..+||.|||+||+.-.+..++.. .+..++..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 00 0 123567777778888889999999999999999999999999988 89999999
Q ss_pred cchhHHHHHHhhCCCCcCChHHHHHhhcccccccccCCccHHHHHHHHHHHhCCCCeeeccceeeccchHHHHHHHHHHH
Q 000426 649 GGVLEAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGNYDEKVACKKILEKKGLQGFQIGKTKIFLRAGQMAELDARRAE 728 (1525)
Q Consensus 649 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~G~TkVF~r~~~~~~LE~~R~~ 728 (1525)
.|..++....+.|+..+..|.+++++++...-.....+.-.+.+|..++++.+.+.+..++++++.+.-.-..+.-.+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 99999999999999999999999887774432111111123567778888888888888888888765322111111111
Q ss_pred H-----h---------------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhHHHH----
Q 000426 729 I-----L---------------------SSAAKTIQRRIRTHIARRRFIAL----REATIVLQSLCRGRLACRVFD---- 774 (1525)
Q Consensus 729 ~-----l---------------------~~aa~~IQ~~~R~~~~Rk~y~~~----r~aai~IQ~~~Rg~laRk~~~---- 774 (1525)
. + ...+..||+-++....+..+... -.+.+.+|.-|=|...+...+
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~ 853 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLY 853 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccc
Confidence 0 0 12344566665555544443221 235566666665544222110
Q ss_pred ----------------------------------------------------------HhhhhHH---HHHHHHHHHHHH
Q 000426 775 ----------------------------------------------------------SMKKEAA---AVKIQKHIRRYD 793 (1525)
Q Consensus 775 ----------------------------------------------------------~~r~~~A---Ai~IQk~~R~~~ 793 (1525)
.+.+... +...|++++...
T Consensus 854 ~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~ 933 (1062)
T KOG4229|consen 854 FAEISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTL 933 (1062)
T ss_pred cccccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhh
Confidence 0111111 345688888888
Q ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000426 794 ARTAYKRLHVSTLVLQTGLRTMAARKEFR-FRKQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQTRWRGRIARREL 869 (1525)
Q Consensus 794 ~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~-~~~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ~~~R~~~ARkel 869 (1525)
.++.+.++..+.+.+| ++++..|+... ......+++-+|..|+.+..+..+.-.+++.+.+|..+++..-+..+
T Consensus 934 ~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 934 ERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred ccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 8999999999999999 77777776443 33456788899999999999999999999999999988776554443
No 23
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.93 E-value=3.3e-27 Score=233.79 Aligned_cols=105 Identities=37% Similarity=0.655 Sum_probs=88.4
Q ss_pred HHHHHHHHhHhHHHHHhhhccCCCCCccchhHHhhchHHHHHHHhhcCcccccchHhhhhhHHHHHHHHhhcCCCcCCHh
Q 000426 1343 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLD 1422 (1525)
Q Consensus 1343 q~f~Qlf~fIn~~lfN~LllRr~~Cs~s~G~qir~nls~LE~W~~~~~~~~~~~a~~~L~~l~Qa~~lL~~~~k~~~~~~ 1422 (1525)
|+|+|||+|||+.+||+||.|+++|+|++|+||||||+.||+||+++|.+.+ ++++|.||+||++|||+.|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999994433 78999999999999999655566665
Q ss_pred HHHhccCCCCCHHHHHHHHhcCccCCCC
Q 000426 1423 EISHDLCPVLSIQQLYRISTMYWDDKYG 1450 (1525)
Q Consensus 1423 ~i~~~~C~~Ls~~QI~kil~~Y~~d~~e 1450 (1525)
.+ .++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 56 7999999999999999999999986
No 24
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.88 E-value=9.9e-22 Score=236.79 Aligned_cols=268 Identities=20% Similarity=0.352 Sum_probs=206.5
Q ss_pred hhhhh----hHHHHHHHHHHHHHHhccCCCc-ccceehHhHHHHHHHHHHHhhhcCCCCCCCccCCCCcchhhhcccccc
Q 000426 1146 FEVER----TSVFDRIIQTIGNAIETQDNND-ILAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSF 1220 (1525)
Q Consensus 1146 ~~~e~----~~l~~~ii~~I~~~i~~~~d~~-~layWLSNt~~Ll~~lq~~l~~sg~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (1525)
+..++ +.+|.++.+.+..++..+.+.. .|+|||+|.+++|||+++.--
T Consensus 586 ~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~--------------------------- 638 (1629)
T KOG1892|consen 586 SPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRD--------------------------- 638 (1629)
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccc---------------------------
Confidence 55555 6789999999999998855554 799999999999999998600
Q ss_pred cCCCCCcccccccCCcCCCccchhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCccccCC
Q 000426 1221 RGTPQGVNLSLINGGVNGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGS 1300 (1525)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fkqqL~~~~~~iy~~l~~~l~k~l~plL~~~i~~~~~~~~~~~~~~ 1300 (1525)
...+.+ + . ...|...|+.+|.-|+..++.+|+|.+...+.. ...
T Consensus 639 ---ls~~~~-----------~------------a-q~vla~~vq~aFr~LV~clqsel~~~~~afLde-n~~-------- 682 (1629)
T KOG1892|consen 639 ---LSRITL-----------D------------A-QDVLAHLVQMAFRYLVHCLQSELNNYMPAFLDE-NSL-------- 682 (1629)
T ss_pred ---hhheeh-----------h------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccc--------
Confidence 001111 0 1 155677778899999999999999876533321 000
Q ss_pred CccccchhhhhhhhhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhcc--CCCCCccchhHHhhc
Q 000426 1301 SRSVANSAAQQALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEYVKAG 1378 (1525)
Q Consensus 1301 s~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~fIn~~lfN~LllR--r~~Cs~s~G~qir~n 1378 (1525)
......++|..|+..+.+|+.|+|...|..|+|+|||+|||+.+||+|... ..+|+--.|--|++-
T Consensus 683 ------------~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~r 750 (1629)
T KOG1892|consen 683 ------------QRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQR 750 (1629)
T ss_pred ------------cCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHH
Confidence 011445999999999999999999999999999999999999999999998 559999999999999
Q ss_pred hHHHHHHHhhcCcccccchHhhhhhHHHHHHHHhhcCCCcCCHhHHHhccCCCCCHHHHHHHHhcCccCCCCCccCCHHH
Q 000426 1379 LAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDV 1458 (1525)
Q Consensus 1379 ls~LE~W~~~~~~~~~~~a~~~L~~l~Qa~~lL~~~~k~~~~~~~i~~~~C~~Ls~~QI~kil~~Y~~d~~e~~~Vs~~~ 1458 (1525)
|..||.||...|.+.+.. ++|-.|+||++||++.|-...++..+ ...|..||.-|++.||..|++|+-| .+++.++
T Consensus 751 l~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e-~~~p~dl 826 (1629)
T KOG1892|consen 751 LGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDE-PFIPTDL 826 (1629)
T ss_pred HHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCC-CCCchHH
Confidence 999999999999877777 79999999999998865444455555 6779999999999999999999888 4999999
Q ss_pred HHHHHhhhhcccC---CCCC--CcccccCCCCCcccccc
Q 000426 1459 ISNMRVLMTEDSN---NAVS--NSFLLDDDSSIPFSVDD 1492 (1525)
Q Consensus 1459 i~~~~~~~~~~~~---~~~~--~~~llD~~~~~pf~~~~ 1492 (1525)
+..+-.+...... .+|. -+|--+.+.-.||-+|+
T Consensus 827 vd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 827 VDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred HHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 9987543322110 1122 23334555566776665
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.19 E-value=1.8e-07 Score=128.38 Aligned_cols=448 Identities=13% Similarity=0.068 Sum_probs=209.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh--ceeecCCc-eEEccCChhhHHHhHhhHHHHHHHHHHHHHHHhhccccccCCCCCce
Q 000426 354 HLKTAAELLMCDPVALEDALCK--RIMITPEE-VIKRSLDPQSALVSRDGLAKTIYSRLFDWLVDKINSSIGQDPNSKSL 430 (1525)
Q Consensus 354 ~l~~~a~LLgv~~~~L~~~L~~--r~~~~~~e-~~~~~l~~~~A~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~ 430 (1525)
.+..+-..||+++++....+-- -.+..|+= +...+ ..++|.-.....|-.+-. |+..=+.-...++..+ ...+
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~-~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKv 399 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEP-REEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKV 399 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccc-cccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceec
Confidence 4667778999999877655322 12223321 22222 334444433333322221 1222222222232211 1225
Q ss_pred EEeecccccccccCCCCCcchhhhhh--hhhhhhhhhHhhhhhcCcccccccccChHHHHHHHhcCCCcceecchhhhcC
Q 000426 431 IGVLDIYGFESFKSNSKTPLICFIIS--CCAHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 508 (1525)
Q Consensus 431 IgiLDI~GFE~f~~NsfEQl~cINya--fn~~vF~~eq~ey~~E~I~w~~i~f~Dn~~~ldlie~~~~Gil~lLdee~~~ 508 (1525)
.+..++.|+..++++. |++-- |+-+-+-..+..+...+++|+ .+-+.+|.+++-...=||.+
T Consensus 400 g~e~v~k~q~~~q~~~-----~v~alAk~lYerlF~wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~------- 463 (1930)
T KOG0161|consen 400 GREWVSKAQNVEQVLF-----AVEALAKALYERLFGWLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF------- 463 (1930)
T ss_pred cchhhhhcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhc----cccCCcceeeeeccccccCc-------
Confidence 5667788877665332 43322 554444456778888999997 45566666666332223332
Q ss_pred CCCchHH----HH-HHHHHHhcCCCCcccCC----CCCCCeEEEecccceeecccCchhhhcCCCcHHHHHHH-------
Q 000426 509 PKSTHET----FA-NKLYQTFKSHKRFVKPK----FSRTDFAIAHYAGEVMYQSDQFLDKNKDYVVPEHQDLL------- 572 (1525)
Q Consensus 509 p~~td~~----~~-~kl~~~~~~~~~f~~p~----~~~~~F~I~Hyag~V~Y~~~gfleKN~D~~~~~~~~ll------- 572 (1525)
.|=+. |. +||.+-| +|.-|+.-- --+-.|..-||+-+- =.+.+-++|=. .+..+|
T Consensus 464 --nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~-----Gi~slLdEEc~~P 534 (1930)
T KOG0161|consen 464 --NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPM-----GILSLLDEECVVP 534 (1930)
T ss_pred --CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchh-----hHHHHHHHHHhcC
Confidence 11111 11 3333333 444444211 123467777772111 11222233311 222222
Q ss_pred hhCCchhHhhcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchh
Q 000426 573 SASNCPFVAGLFPPLPEETSKSSKFSSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVL 652 (1525)
Q Consensus 573 ~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvl 652 (1525)
.++...|+..|+.... ++.++|.... +.+....+....-+.+ |+|.-||-..++..-.+..|+.+|+|++ .
T Consensus 535 kAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~ 605 (1930)
T KOG0161|consen 535 KATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-N 605 (1930)
T ss_pred CCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-c
Confidence 2333344444432210 1222332222 3344445555555554 9999999999999889999999999999 8
Q ss_pred HHHHHHhhCCCCcCChHHHHHhhcccccccccCC-----ccHHHHHHHHHHHhCCCCeeeccceeec---cchHH---HH
Q 000426 653 EAIRISCAGYPTRRPFFEFLNRFGLLAPEFLEGN-----YDEKVACKKILEKKGLQGFQIGKTKIFL---RAGQM---AE 721 (1525)
Q Consensus 653 e~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~-----~~~~~~~~~il~~~~~~~~~~G~TkVF~---r~~~~---~~ 721 (1525)
+.|...-.| +..+..+..++.. ......+. .-.+...-.++..+....-.|=+-=|+. ++|.+ -.
T Consensus 606 ~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lv 681 (1930)
T KOG0161|consen 606 KLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLV 681 (1930)
T ss_pred HHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHH
Confidence 888777666 6777777776655 21111111 0112222233333322111111111111 11221 22
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhh-----hHHHHHhhhhH-------HHHHHHH
Q 000426 722 LDARRAEILSSAAKTIQRRIRTHIARRRFIALREATIVLQSL--CRGRLA-----CRVFDSMKKEA-------AAVKIQK 787 (1525)
Q Consensus 722 LE~~R~~~l~~aa~~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~--~Rg~la-----Rk~~~~~r~~~-------AAi~IQk 787 (1525)
|..+|-..+-.. +.|. -.||-.|-.|...+.---.+... -.|+.. ++....+.... .-+-..+
T Consensus 682 l~QLrcngVLEg-IRic--R~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfka 758 (1930)
T KOG0161|consen 682 LNQLRCNGVLEG-IRIC--RQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKA 758 (1930)
T ss_pred HHHhhccCcHHH-HHHH--HhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehH
Confidence 344442221111 2222 24666666554443211111111 111111 11111111000 0011112
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000426 788 HIRRYDARTAYKRLHVSTLVLQTGLRTMAARKEFRFR-KQTKAAIIIQARWRCHKATAYY 846 (1525)
Q Consensus 788 ~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~-~~~~AAi~IQ~~~R~~~ar~~y 846 (1525)
.+-+.+.-.+=..+..-++.+|+.+||+++|+.+..+ .+..|..+||+..|.|...+.+
T Consensus 759 Gvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 759 GVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2222333333345556677889999999999988655 4467778999999999776543
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.65 E-value=2.8e-08 Score=109.24 Aligned_cols=90 Identities=26% Similarity=0.279 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhchHHHhhc-CcccccCC
Q 000426 133 VFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNPVLEAFG-NAKTVRNN 211 (1525)
Q Consensus 133 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snpiLEaFG-NAkT~rN~ 211 (1525)
||+.+..++..|+ ++.|+||+..|+||||||.|+.--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 9999889999987 6799999999999999998743211 00010012222 2777788889999 99999999
Q ss_pred CCCcccceEEEEecCCCccc
Q 000426 212 NSSRFGKFVEIQFDKQGRIS 231 (1525)
Q Consensus 212 NSSRfGK~i~l~f~~~g~i~ 231 (1525)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654443
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.57 E-value=2.9e-07 Score=117.89 Aligned_cols=87 Identities=33% Similarity=0.384 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 778 KEAAAVKIQKHIRRYDARTAYKRLHVSTLVLQTGLRTMAARKEFRFRKQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQ 857 (1525)
Q Consensus 778 ~~~AAi~IQk~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ 857 (1525)
..++++.||+.+|+|..|+.|..+|.+++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|...+.+++.+|
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~q 748 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQ 748 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999999999999999998 333 78999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 000426 858 TRWRGRIARR 867 (1525)
Q Consensus 858 ~~~R~~~ARk 867 (1525)
+..|++++|.
T Consensus 749 s~~r~~~~r~ 758 (862)
T KOG0160|consen 749 SGVRAMLARN 758 (862)
T ss_pred HHHHHHHhcc
Confidence 9999999998
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.42 E-value=0.00012 Score=97.13 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-
Q 000426 779 EAAAVKIQKHIRRYDARTAYKRLHVSTLVLQTGLRTMAARKEFRFRKQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQ- 857 (1525)
Q Consensus 779 ~~AAi~IQk~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ- 857 (1525)
...++.||+.|||+..|++|....+.+..+|...+|+..|+.+......++++.+|..||....|..|+.....++.+|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~ 824 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK 824 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777666555566777777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 000426 858 TRWRGRIARR 867 (1525)
Q Consensus 858 ~~~R~~~ARk 867 (1525)
..+|.+..+.
T Consensus 825 ~i~~~~~~~~ 834 (1463)
T COG5022 825 TIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHhH
Confidence 3444444333
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.40 E-value=4.9e-07 Score=115.78 Aligned_cols=129 Identities=23% Similarity=0.325 Sum_probs=94.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000426 729 ILSSAAKTIQRRIRTHIARRRFIALREATIVLQSLCRGRLACRVFDSMKKEAAAVKIQKHIRRYDARTAYKRLHVSTLVL 808 (1525)
Q Consensus 729 ~l~~aa~~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQk~~R~~~~Rr~y~~~r~a~i~I 808 (1525)
....+|..||+++|+|+.|+.|+.+|.-++.||+.+||+..|+.|+.+-. .+. ..++.|.+.| .+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~w---Sv~--------~lek~~lrwR----~k 872 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITW---SVG--------VLEKLILRWR----RK 872 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheech---hhh--------HHHHHHHHHH----Hh
Confidence 34578899999999999999999999999999999999999998876531 111 1233344333 46
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 809 QTGLRTMAARKEFRFRKQTKAAIIIQARWRCHKAT--AYYKRLKRGSIKAQTRWRGRIARRELRKLKM 874 (1525)
Q Consensus 809 Qs~~Rg~~aRr~~~~~~~~~AAi~IQ~~~R~~~ar--~~y~~~r~a~i~iQ~~~R~~~ARkel~~lk~ 874 (1525)
|..+||+..|+.... +..||+.||..+|-|+.- ..|.++.+|++.||+.+|-..|+.+++++..
T Consensus 873 ~~g~Rgfk~~~~~e~--~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 873 GKGFRGFKGRALFEE--QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred hhhhcccccccchhc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777766665433 234778888888877766 6677888888888888888888877776653
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.27 E-value=2.3e-06 Score=70.14 Aligned_cols=41 Identities=34% Similarity=0.720 Sum_probs=37.6
Q ss_pred CcEEEEeCCCCCeEeEEEEEEcCCeEEEEecCCcEEEEecC
Q 000426 11 GSHVWVEDPEEAWIDGQVLKITGKDVEVQTTKGKKVVANLS 51 (1525)
Q Consensus 11 g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~~~g~~~~~~~~ 51 (1525)
+.+|||||++++|+.|+|++.+|+.++|.+.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 35899999999999999999999999999999999988754
No 31
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=98.14 E-value=1.1e-06 Score=115.66 Aligned_cols=215 Identities=15% Similarity=0.127 Sum_probs=171.5
Q ss_pred cchhHHHHHHHHHHHHHHccCCCeeeeccCCCCCCCCccccchhhhhhhhccchhHHHHHHhhCCCCcCChHHHHHhhcc
Q 000426 598 SSIGSRFKLQLQQLMDTLNSTEPHYIRCVKPNNLLKPAVFENANIMQQLRCGGVLEAIRISCAGYPTRRPFFEFLNRFGL 677 (1525)
Q Consensus 598 ~tv~~~f~~~L~~Lm~~l~~t~~hfIrCIkPN~~k~p~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~ 677 (1525)
.....++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..+++..+|+..+++.+|...+.+
T Consensus 789 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i 868 (1062)
T KOG4229|consen 789 PQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRI 868 (1062)
T ss_pred CccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccc
Confidence 33344677788889999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred cccccccCCccHHHHHHHHHHH--hCCCCeeeccceeeccchHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 678 LAPEFLEGNYDEKVACKKILEK--KGLQGFQIGKTKIFLRAGQMAELDARR-AEILSSAAKTIQRRIRTHIARRRFIALR 754 (1525)
Q Consensus 678 l~~~~~~~~~~~~~~~~~il~~--~~~~~~~~G~TkVF~r~~~~~~LE~~R-~~~l~~aa~~IQ~~~R~~~~Rk~y~~~r 754 (1525)
..|.... ......... .+.++++.|+++||+...-...++..- .+....-+...|++++....|+.|.++.
T Consensus 869 ~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 942 (1062)
T KOG4229|consen 869 GLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLS 942 (1062)
T ss_pred cCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhc
Confidence 8873221 111111221 244689999999999887665444322 2322213677899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHH
Q 000426 755 EATIVLQSLCRGRLACRVFD-SMKKEAAAVKIQKHIRRYDARTAYKRLHVSTLVLQTGLRTMAARKE 820 (1525)
Q Consensus 755 ~aai~IQ~~~Rg~laRk~~~-~~r~~~AAi~IQk~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~ 820 (1525)
.+.+.+| |++++.|+... ......++.-+|..|+.+..+..+...+++.+.+|+.+++..-++.
T Consensus 943 ~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 943 EGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMI 1007 (1062)
T ss_pred chhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhh
Confidence 9999999 88888776443 2334568889999999999999999999999999999988766654
No 32
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.13 E-value=3.5e-06 Score=108.23 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000426 731 SSAAKTIQRRIRTHIARRRFIALRE------------ATIVLQSLCRGRLACRVFDSMKKEAAAVKIQKHIRRYDARTAY 798 (1525)
Q Consensus 731 ~~aa~~IQ~~~R~~~~Rk~y~~~r~------------aai~IQ~~~Rg~laRk~~~~~r~~~AAi~IQk~~R~~~~Rr~y 798 (1525)
..||..||..+|...-++.-.+-.. ..+.++..+++ +..+....||..||+.+|+|+.|+.|
T Consensus 756 a~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~------~~~r~~~~aa~~iq~~f~~yk~r~~~ 829 (975)
T KOG0520|consen 756 AQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSM------CDDRSDPAAASRIQKKFRGYKQRKEF 829 (975)
T ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhc------CccccchhHHHHhhhhhhhHHhhhhh
Confidence 3567788888887765544322222 22223333332 22334567999999999999999999
Q ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000426 799 KRLHVSTLVLQTGLRTMAARKEFRFR--------KQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQTRWRGRIA 865 (1525)
Q Consensus 799 ~~~r~a~i~IQs~~Rg~~aRr~~~~~--------~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ~~~R~~~A 865 (1525)
+.++.-++.||+++||+..|+.|+.. +.--++-.+|+-+|+++.|+.....-.|++.||.++|.+..
T Consensus 830 l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq 904 (975)
T KOG0520|consen 830 LSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQ 904 (975)
T ss_pred cccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHH
Confidence 99999999999999999999998643 22456778999999999999988888899999999987643
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0091 Score=74.32 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
+.+...|+.|++.|..++..+..++.+.+-.+...+.+++...+..+-..+++++|+..+.++++++..|--|-+.
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~ 511 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE 511 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445556666666666666666666665555555555555555555555556666666666666655555444433
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.64 E-value=0.087 Score=67.14 Aligned_cols=29 Identities=14% Similarity=-0.012 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCHHHH
Q 000426 1313 LIAHWQGIVKSLGNFLNTLKANHVPPFLV 1341 (1525)
Q Consensus 1313 ~~~~~~~il~~L~~~~~~l~~~~v~~~li 1341 (1525)
|...+...+..+|+.+..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45688899999999999988877665543
No 35
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.37 E-value=0.1 Score=66.55 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 966 DTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDE---TEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 966 ~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~e---le~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
++.....+.+|.+...+++.+++...+.+..++..++....+++.+++. .+..+.+|-+..-+||+++..||+++..
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~d 473 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGD 473 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666655555555543 3444444444444555555555555443
Q ss_pred H
Q 000426 1043 L 1043 (1525)
Q Consensus 1043 L 1043 (1525)
|
T Consensus 474 l 474 (1243)
T KOG0971|consen 474 L 474 (1243)
T ss_pred H
Confidence 3
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.14 Score=64.39 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=12.3
Q ss_pred cCCCCCccchhHHhhchHHHHHHH
Q 000426 1363 RRECCSFSNGEYVKAGLAELEHWC 1386 (1525)
Q Consensus 1363 Rr~~Cs~s~G~qir~nls~LE~W~ 1386 (1525)
.|+-.-|=-|+=+.-|=-+.--|.
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 355556666665554444444443
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.18 E-value=0.78 Score=60.95 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhHhHHHHHhhhccCCCC
Q 000426 1340 LVRKVFTQIFSFINVQLFNSLLLRRECC 1367 (1525)
Q Consensus 1340 li~q~f~Qlf~fIn~~lfN~LllRr~~C 1367 (1525)
.-.|=|+-+..+-...-|+.+|-.|.+|
T Consensus 930 ~~~qk~r~~~~~~~~~~F~~~l~~R~~s 957 (1074)
T KOG0250|consen 930 QKYQKFRKLLTRRATEEFDALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3344444455555555566666665554
No 38
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.0081 Score=74.45 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 000426 777 KKEAAAVKIQKHIRRYDARTAYKRLHVSTLVLQTGLRTMAARKEFRFRKQTKAAIIIQARWRCHKATAYYKR-------- 848 (1525)
Q Consensus 777 r~~~AAi~IQk~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~AAi~IQ~~~R~~~ar~~y~~-------- 848 (1525)
+...-++.||+.||||++|.+|++++.+++.|+ ++|.+. ....+..||+.+|+++.++.|.+
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk~~~WP~pP 763 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYK---------LKSYVQELQRRFRGAKQMRDYGKSIRWPAPP 763 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhhhccccCCCCCCCCCc
Confidence 344578899999999999999999999999998 777432 23456678999999999988864
Q ss_pred --HhhHHHHHHHHHHHHHHHHHHH
Q 000426 849 --LKRGSIKAQTRWRGRIARRELR 870 (1525)
Q Consensus 849 --~r~a~i~iQ~~~R~~~ARkel~ 870 (1525)
++.+.-.+|..+-+|.|++-++
T Consensus 764 ~~Lr~~~~~L~~lf~rwra~~~~~ 787 (1001)
T KOG0164|consen 764 LVLREFEELLRELFIRWRAWQILK 787 (1001)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555665555555544443
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.94 E-value=2.9 Score=55.83 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 972 SLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 972 ~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
++..+.++.+.++..+++..+.++..+..+..+.++..+++.+.+.+....+.++..++.++++...+++.|+
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444455555555555555555555544
No 40
>PRK11637 AmiB activator; Provisional
Probab=96.93 E-value=0.33 Score=60.73 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 1012 LDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 1012 l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
+..++.+....+.++..++...+.|+.++..+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.91 E-value=0.25 Score=64.65 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEA 1001 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~ 1001 (1525)
.....+|+.|+..|+.++...++....++.+..++
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777776666443
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.82 E-value=5 Score=56.73 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=5.2
Q ss_pred eccccccccc
Q 000426 434 LDIYGFESFK 443 (1525)
Q Consensus 434 LDI~GFE~f~ 443 (1525)
|.|.||-+|.
T Consensus 5 l~l~nf~s~~ 14 (1164)
T TIGR02169 5 IELENFKSFG 14 (1164)
T ss_pred EEEeCeeeEC
Confidence 4455555554
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.79 E-value=5.2 Score=56.55 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.5
Q ss_pred ceehHh
Q 000426 1175 AYWLSN 1180 (1525)
Q Consensus 1175 ayWLSN 1180 (1525)
.|||+|
T Consensus 617 ~~~lg~ 622 (1164)
T TIGR02169 617 KYVFGD 622 (1164)
T ss_pred HHHCCC
Confidence 344444
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.28 Score=63.86 Aligned_cols=70 Identities=26% Similarity=0.437 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 976 EVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 976 e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
++..++.++...+++.++.....++.+.+.+.++-+.++++.++..++.++..++..++.|++++..+..
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555566666666677777777777777777777777777766654
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.73 E-value=3.7 Score=58.39 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1007 EKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1007 ~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
++...+++.+.+...++.++.++++++..++.+.+.+++
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555444444433
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.72 E-value=0.22 Score=52.46 Aligned_cols=107 Identities=32% Similarity=0.433 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 914 KAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKAIEEAPPVVKEKEVLVEDTKKIESLTAEVEGLKTALESEKKRADE 993 (1525)
Q Consensus 914 k~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l~e~~~~~~e~~~l~~~~~~~~~L~~e~~~L~~el~~le~~~~e 993 (1525)
+..++..|+.++..++.+++.+...+......+ ++. ......++.|...+..|+.+++..+.++.+
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l----ee~----------~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL----EES----------EKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhH----------HHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345677788887777777777766654332221 110 001122334555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 994 TERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 994 le~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
..+++.+... +.+..+.++..|..+....+.++..|+....
T Consensus 99 ~~ekl~e~d~-------~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 99 TTEKLREADV-------KAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHH-------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5544444444 4444444444444444455555555444443
No 47
>PRK11637 AmiB activator; Provisional
Probab=96.62 E-value=0.47 Score=59.35 Aligned_cols=29 Identities=17% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000426 1008 KQKKLDETEKKVIQLQESLTRLEEKLANL 1036 (1525)
Q Consensus 1008 ~~~~l~ele~~~~~Lq~~l~~LEeki~~L 1036 (1525)
+..+..+.+.++..|+.+..+++..+..+
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 48
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.62 E-value=0.0026 Score=44.20 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000426 732 SAAKTIQRRIRTHIARRRF 750 (1525)
Q Consensus 732 ~aa~~IQ~~~R~~~~Rk~y 750 (1525)
+||++||+.||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5667777777777777666
No 49
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.61 E-value=0.0027 Score=44.10 Aligned_cols=19 Identities=58% Similarity=0.744 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000426 828 KAAIIIQARWRCHKATAYY 846 (1525)
Q Consensus 828 ~AAi~IQ~~~R~~~ar~~y 846 (1525)
+||++||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5667777777777777666
No 50
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.57 E-value=1.8 Score=54.74 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000426 786 QKHIRRYDARTAYKRLHVSTLVLQTGLRTMAARKEFRFRKQTKAAIIIQARWRCHKATAYYKRLKRGS 853 (1525)
Q Consensus 786 Qk~~R~~~~Rr~y~~~r~a~i~IQs~~Rg~~aRr~~~~~~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~ 853 (1525)
=+.+-.|+.+.+|.+...++..+=.. +.. -.-+..+.+++|+..|||++|++++..-...
T Consensus 780 v~kVn~WLv~sRWkk~q~~a~sVIKL------kNk--I~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~ 839 (1259)
T KOG0163|consen 780 VAKVNKWLVRSRWKKSQYGALSVIKL------KNK--IIYRAECVLKAQRIARGYLARKRHRPRIAGI 839 (1259)
T ss_pred HHHHHHHHHHhHHHHhhhhhhheeeh------hhH--HHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 34567899999998776544322111 111 1112456788999999999999886654433
No 51
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.54 E-value=0.069 Score=71.63 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhhhHHHHHhhhh---HHHHHHHHHHHHHHHHHHH------HH-hhhhhHHHHHhhhHHHH--HHHHHHHH
Q 000426 758 IVLQSLCRGRLACRVFDSMKKE---AAAVKIQKHIRRYDARTAY------KR-LHVSTLVLQTGLRTMAA--RKEFRFRK 825 (1525)
Q Consensus 758 i~IQ~~~Rg~laRk~~~~~r~~---~AAi~IQk~~R~~~~Rr~y------~~-~r~a~i~IQs~~Rg~~a--Rr~~~~~~ 825 (1525)
+..|+..||...|.....+--. .-..++|+..||+..|..+ .+ .-..+.-||+.|||++. =+.....-
T Consensus 511 is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~ 590 (1401)
T KOG2128|consen 511 ISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDS 590 (1401)
T ss_pred hhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHH
Confidence 4455555655555433222111 1123346666666665543 22 23455566777777663 22222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHH
Q 000426 826 QTKAAIIIQARWRCHKATAYYKRLK-------RGSIKAQTRWRGRIARRELRKLK 873 (1525)
Q Consensus 826 ~~~AAi~IQ~~~R~~~ar~~y~~~r-------~a~i~iQ~~~R~~~ARkel~~lk 873 (1525)
..+.++.+|++.||+.+|+.|.+.. .+++.||+..|.+.+|..|+.|.
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 3456666777777777766554433 47777888888888887777665
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.41 E-value=0.79 Score=57.56 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.6
Q ss_pred HHhhCCCCc
Q 000426 657 ISCAGYPTR 665 (1525)
Q Consensus 657 i~~~Gyp~r 665 (1525)
|.+.||.+-
T Consensus 42 iFKVGw~s~ 50 (546)
T PF07888_consen 42 IFKVGWSST 50 (546)
T ss_pred EeecCCCch
Confidence 333444433
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=1.9 Score=56.63 Aligned_cols=21 Identities=29% Similarity=0.744 Sum_probs=16.3
Q ss_pred ecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 155 VSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 155 isGESGaGKTes~k~~~~yla~~~~ 179 (1525)
|+|=.||||+- |+.-+|++-|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 78999999996 6666676544
No 54
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.22 E-value=1.8 Score=56.76 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 882 LKEAKDKLQKTVEDLTWRIQLEKRLRTDLE 911 (1525)
Q Consensus 882 l~~~~~~Le~kv~el~~rl~~ek~~r~~le 911 (1525)
++...+.|..+++.|..++......+.+++
T Consensus 406 leke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 406 LEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777765555444443
No 55
>PRK03918 chromosome segregation protein; Provisional
Probab=96.18 E-value=0.63 Score=63.75 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.9
Q ss_pred EEecCCCCCChhHHHHHH
Q 000426 153 ILVSGESGAGKTETTKML 170 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~ 170 (1525)
.+|+|++|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 579999999999976543
No 56
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.69 Score=56.52 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHH
Q 000426 1008 KQKKLDETEKKVIQLQESLTRLEE----------KLANLESENQVLRQQ 1046 (1525)
Q Consensus 1008 ~~~~l~ele~~~~~Lq~~l~~LEe----------ki~~Le~E~~~Lrqq 1046 (1525)
+..+..+++.++-.||+.+..|+. ++..|+++...|.++
T Consensus 168 llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 168 LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777776665 444566666666554
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.15 E-value=2.6 Score=55.51 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 982 TALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 982 ~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
..|..++.+...||..+......-.++-.-|-+.+.++.-++..+..-+.+|.+|+..+..
T Consensus 594 ~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443332222222344444555555555555555555555555555543
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.14 E-value=1.2 Score=57.86 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 1011 KLDETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 1011 ~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
.+.++..+...++.++.+|+....+++.++.
T Consensus 352 ~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 3333334444444444444444444333333
No 59
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.99 E-value=1.4 Score=51.07 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhh
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDET-----------EKKVIQLQESLTRLEEKLANL 1036 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~el-----------e~~~~~Lq~~l~~LEeki~~L 1036 (1525)
..+..+++|+..++-+++++.+...|.+++..++..++.+......++ ..-++.-|.-+.+||.++++|
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777776666655555443222222 234455677788888888888
Q ss_pred HHHHHHHHH
Q 000426 1037 ESENQVLRQ 1045 (1525)
Q Consensus 1037 e~E~~~Lrq 1045 (1525)
--|...|-|
T Consensus 214 m~EirnLLQ 222 (401)
T PF06785_consen 214 MYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHH
Confidence 888877655
No 60
>PRK02224 chromosome segregation protein; Provisional
Probab=95.98 E-value=3.3 Score=56.76 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=5.9
Q ss_pred eeccchHHHH
Q 000426 712 IFLRAGQMAE 721 (1525)
Q Consensus 712 VF~r~~~~~~ 721 (1525)
||++.|.+..
T Consensus 133 ~~i~Qge~~~ 142 (880)
T PRK02224 133 AYVRQGEVNK 142 (880)
T ss_pred eEeeccChHH
Confidence 6666666533
No 61
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.90 E-value=0.006 Score=73.06 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=43.4
Q ss_pred ecCCCCCCCCCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHH
Q 000426 103 INPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETT 167 (1525)
Q Consensus 103 vNP~~~lp~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 167 (1525)
+|||...| |++..-..++. +.++|-|-| -+.-|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999998 88776555554 346776544 3556777789999999999999999854
No 62
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=6.3 Score=49.43 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 843 TAYYKRLKRGSIKAQTRWRGRIARREL--RKLKMAARETGALKEAKDKLQKTVEDLTWRIQL 902 (1525)
Q Consensus 843 r~~y~~~r~a~i~iQ~~~R~~~ARkel--~~lk~~ar~~~~l~~~~~~Le~kv~el~~rl~~ 902 (1525)
|..+.+++.-+...|++.-++..+++- .++...+.+...-.+....++.+..+|...++.
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566665555544432 223333333333334444555555555555443
No 63
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.74 E-value=16 Score=51.64 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=17.3
Q ss_pred HHhhchHHHHHHHhhcCcccccchHhhhhhHHHHHHHH
Q 000426 1374 YVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFL 1411 (1525)
Q Consensus 1374 qir~nls~LE~W~~~~~~~~~~~a~~~L~~l~Qa~~lL 1411 (1525)
.++-.+..|+.=+..-| ...-.|.++++.+..-...|
T Consensus 946 ~~~~~i~~le~~i~~lg-~VN~~Aiee~e~~~~r~~~l 982 (1163)
T COG1196 946 ELEREIERLEEEIEALG-PVNLRAIEEYEEVEERYEEL 982 (1163)
T ss_pred HHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHH
Confidence 45555555555554444 22223444444444444444
No 64
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.70 E-value=0.2 Score=67.42 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhHHHHHh----h-hhHHHHHHHHHHHHHHH----HHHHHHhh
Q 000426 737 IQRRIRTHIARRRFIAL-----REATIVLQSLCRGRLACRVFDSM----K-KEAAAVKIQKHIRRYDA----RTAYKRLH 802 (1525)
Q Consensus 737 IQ~~~R~~~~Rk~y~~~-----r~aai~IQ~~~Rg~laRk~~~~~----r-~~~AAi~IQk~~R~~~~----Rr~y~~~r 802 (1525)
.|.-+|+...|..--.+ ..-...+|+..||+..|..++.. + ..-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 67777777766642221 12234459999999988876653 2 45577889999999983 33456677
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000426 803 VSTLVLQTGLRTMAARKEFRFRK-----QTKAAIIIQARWRCHKATAYYKRLKR 851 (1525)
Q Consensus 803 ~a~i~IQs~~Rg~~aRr~~~~~~-----~~~AAi~IQ~~~R~~~ar~~y~~~r~ 851 (1525)
..++.+|+..||.++|+.+.... ...+.+.||++.|+...|..|..+..
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 78999999999999998875443 35788999999999999999987764
No 65
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=13 Score=50.09 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=8.5
Q ss_pred hHHhhchHHHHHHHhhc
Q 000426 1373 EYVKAGLAELEHWCYKA 1389 (1525)
Q Consensus 1373 ~qir~nls~LE~W~~~~ 1389 (1525)
.++.-|++.+|.=|...
T Consensus 938 ~k~q~~l~~le~~~~~~ 954 (1293)
T KOG0996|consen 938 AKAQKKLSELEREIEDT 954 (1293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.59 E-value=0.91 Score=47.27 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000426 1014 ETEKKVIQLQESLTRLEEKLANLESENQVLRQQA 1047 (1525)
Q Consensus 1014 ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq~ 1047 (1525)
.|+.+...|++++..++.++.+|..+|..|=++.
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888899999999999999999999886654
No 67
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.58 E-value=2 Score=55.76 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH------hhhhhhhhhhc
Q 000426 1258 QLTAYVEKIYGMIRDNLKK------EISPLLGLCIQ 1287 (1525)
Q Consensus 1258 qL~~~~~~iy~~l~~~l~k------~l~plL~~~i~ 1287 (1525)
.|..-++|+-+-+++.++. .+..+=+.|||
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~q 446 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQ 446 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444556766666665543 34443345665
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.55 E-value=6.2 Score=48.30 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 1006 EEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 1006 e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
.++...+...+++...|..+-.+|+..+..++.++..
T Consensus 213 ~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~ 249 (420)
T COG4942 213 AQLNSELSADQKKLEELRANESRLKNEIASAEAAAAK 249 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555544443
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.54 E-value=1.3 Score=46.70 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 986 SEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 986 ~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
.+..++..+++++......+.....++.+...+...+...+..|+.+....+..+..+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444444444555555555555555555555555555554444
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.53 E-value=3.2 Score=53.82 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 993 ETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 993 ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
+++..+.+.....+....+...++.++..|+.....+++++.+++.++..++.
T Consensus 341 el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 33333333344444455555566666666666666565656555555555544
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.48 E-value=12 Score=50.00 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 990 RADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 990 ~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
+.+.+..+-+++-....+...++++++.++.+-+..+...+.++..|+.+++.+..
T Consensus 1690 rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444444444433334445566677777776667777777777777777665543
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.47 E-value=3.2 Score=50.04 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQ 1021 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~ 1021 (1525)
.+++.+..++..+..++...++.+.+++.++..+....++...+..+++.++..
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444444444443333333333333333333
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.43 E-value=4.1 Score=53.09 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQ 1021 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~ 1021 (1525)
..++..|...+++++.+...++.+.++..+.++.++.++..++.+++.++.....
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555556666666665665555555555555555544333
No 74
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.41 E-value=6 Score=44.46 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1005 SEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1005 ~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
++++...++..++.+--||+++..-+.+|+.|+..++.+.+
T Consensus 266 m~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 266 MEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666777777777777777777777655
No 75
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.36 E-value=4.2 Score=45.48 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLE---EKLANLESENQVLRQ 1045 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LE---eki~~Le~E~~~Lrq 1045 (1525)
.+..+.+..+.++.-+.++++..+.++..-....-.+++..++++.+-.++.-|+.++..-| +.++.|++|-..|+|
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555566666666666655444444456666666666666666666555433 244455666555555
Q ss_pred H
Q 000426 1046 Q 1046 (1525)
Q Consensus 1046 q 1046 (1525)
+
T Consensus 179 e 179 (333)
T KOG1853|consen 179 E 179 (333)
T ss_pred H
Confidence 4
No 76
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.32 E-value=14 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHccCC-Ceeeecc
Q 000426 602 SRFKLQLQQLMDTLNSTE-PHYIRCV 626 (1525)
Q Consensus 602 ~~f~~~L~~Lm~~l~~t~-~hfIrCI 626 (1525)
.+|+.+-..|-+--..|. ..|.+|+
T Consensus 226 dRf~~qf~rLk~FY~~~S~lqYfk~L 251 (980)
T KOG0980|consen 226 DRFHTQFERLKQFYADCSNLQYFKRL 251 (980)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345555444444443333 2344444
No 77
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.29 E-value=12 Score=48.28 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 979 GLKTALESEKKRADETERKSKEAQ 1002 (1525)
Q Consensus 979 ~L~~el~~le~~~~ele~~~~e~~ 1002 (1525)
.++.+...++-..+++++++.+++
T Consensus 253 ~i~E~d~~lq~sak~ieE~m~qlk 276 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIEEKMRQLK 276 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444443
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=95.28 E-value=7.8 Score=53.23 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=4.3
Q ss_pred eeccchHH
Q 000426 712 IFLRAGQM 719 (1525)
Q Consensus 712 VF~r~~~~ 719 (1525)
||++.|.+
T Consensus 130 ~~~~Qg~~ 137 (880)
T PRK03918 130 IYIRQGEI 137 (880)
T ss_pred EEEeccch
Confidence 45555554
No 79
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.20 E-value=24 Score=50.17 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000426 736 TIQRRIRTHIARRRFIALREATIVLQSLCRGR 767 (1525)
Q Consensus 736 ~IQ~~~R~~~~Rk~y~~~r~aai~IQ~~~Rg~ 767 (1525)
.|..|+|-...-..+..++..+..++..++-.
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555554433
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.09 E-value=3 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000426 917 EVTKLQNSLQEMQAKLDEANASL 939 (1525)
Q Consensus 917 E~~kLq~~l~elq~qlee~~~~l 939 (1525)
+.+.+++++..++..+.+.+++.
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.00 E-value=11 Score=54.14 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.1
Q ss_pred cEEEecCCCCCChhHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~ 171 (1525)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367999999999998766554
No 82
>PRK09039 hypothetical protein; Validated
Probab=94.88 E-value=0.96 Score=54.73 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000426 918 VTKLQNSLQEMQAKLDEA 935 (1525)
Q Consensus 918 ~~kLq~~l~elq~qlee~ 935 (1525)
...++.++.+++.+++.+
T Consensus 76 ~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 76 NQDLQDSVANLRASLSAA 93 (343)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 344555666666655543
No 83
>PTZ00014 myosin-A; Provisional
Probab=94.84 E-value=0.07 Score=70.92 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000426 827 TKAAIIIQARWRCHKATAYYKRLKRGSIKAQTRWRGRIARRE 868 (1525)
Q Consensus 827 ~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ~~~R~~~ARke 868 (1525)
...++.||++||+|++|+.|++.+.+++.||+.||+++++++
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999998875
No 84
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.78 E-value=0.031 Score=41.03 Aligned_cols=21 Identities=48% Similarity=0.539 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 000426 779 EAAAVKIQKHIRRYDARTAYK 799 (1525)
Q Consensus 779 ~~AAi~IQk~~R~~~~Rr~y~ 799 (1525)
..+|++||+.||||++|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 457788888888888888773
No 85
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.77 E-value=30 Score=49.01 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.5
Q ss_pred HHHHHHHhCC
Q 000426 693 CKKILEKKGL 702 (1525)
Q Consensus 693 ~~~il~~~~~ 702 (1525)
...+|..+++
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3445544443
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.75 E-value=2.2 Score=46.47 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 974 TAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 974 ~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
..|++.|+.....+++....+-.+...++.+...+..++..++.+...+..+.+.+..+..+|-.++..|+.
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~ 137 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQR 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHH
Confidence 333344444444444333333333333333333344444444444444444444444444444444444433
No 87
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.74 E-value=8.1 Score=42.98 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQET----SEEKQKKLDETEKKVIQLQESLTRLEEKLAN 1035 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~----~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~ 1035 (1525)
+.++|..+++.++..+...+.++..+++++.-.... +....++..+++.++..|+.++..|..++.+
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666655443222 2222334444555555555555555554444
No 88
>PRK09039 hypothetical protein; Validated
Probab=94.70 E-value=3.8 Score=49.66 Aligned_cols=12 Identities=25% Similarity=0.019 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 000426 855 KAQTRWRGRIAR 866 (1525)
Q Consensus 855 ~iQ~~~R~~~AR 866 (1525)
..|-..+.-+.+
T Consensus 39 ~~q~fLs~~i~~ 50 (343)
T PRK09039 39 VAQFFLSREISG 50 (343)
T ss_pred HHHHHHHHHHhh
Confidence 335555444433
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.67 E-value=4.3 Score=58.02 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=6.9
Q ss_pred HHHHHHhcCCCH
Q 000426 355 LKTAAELLMCDP 366 (1525)
Q Consensus 355 l~~~a~LLgv~~ 366 (1525)
-..+-.++|++.
T Consensus 172 k~~~d~if~~~~ 183 (1311)
T TIGR00606 172 KQKFDEIFSATR 183 (1311)
T ss_pred HHHHHHHhhhhH
Confidence 345566666653
No 90
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.63 E-value=11 Score=43.38 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 1008 KQKKLDETEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 1008 ~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
+..++.+.+.........+..|+..+..|+.++..
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 91
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.63 E-value=34 Score=49.15 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHhhhccCCCCCccchhHHhhchHHHH
Q 000426 1355 QLFNSLLLRRECCSFSNGEYVKAGLAELE 1383 (1525)
Q Consensus 1355 ~lfN~LllRr~~Cs~s~G~qir~nls~LE 1383 (1525)
..+|..|-+.++ ..|.+||.+...-+
T Consensus 1257 ~~mN~~L~~i~f---~~~~~~rL~~~~~~ 1282 (1486)
T PRK04863 1257 RMLNQGLQNISF---GQVKSVRLNVNVRE 1282 (1486)
T ss_pred HHHHHHHhcCCC---CCCceEEEEeeecH
Confidence 456777766554 44666665555444
No 92
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.62 E-value=8.9 Score=45.61 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLE 1037 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le 1037 (1525)
.++.+++|+...........+++.....++.....+.....+.+.+-+.+.+.|+.+...+|.+...||
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444444444443333322222222333333333344444444444444444
No 93
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.61 E-value=0.038 Score=40.52 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000426 731 SSAAKTIQRRIRTHIARRRF 750 (1525)
Q Consensus 731 ~~aa~~IQ~~~R~~~~Rk~y 750 (1525)
..+|+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777776
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.42 E-value=9.9 Score=45.85 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=5.0
Q ss_pred cCChHHHHH
Q 000426 665 RRPFFEFLN 673 (1525)
Q Consensus 665 r~~~~~F~~ 673 (1525)
+++..+|++
T Consensus 13 ~isL~~FL~ 21 (325)
T PF08317_consen 13 PISLQDFLN 21 (325)
T ss_pred CcCHHHHHH
Confidence 355556655
No 95
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.41 E-value=13 Score=43.75 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 977 VEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 977 ~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
+...+.++..+..++.+++++.+..-.+.+++...+......-..|+.++..+++++.+....++..
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555666666666666667777776666666667777777777776644444433
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.38 E-value=8.3 Score=44.35 Aligned_cols=55 Identities=25% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 990 RADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 990 ~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
+.+.++.++..+...+.+...+.+.++..+..|+..+..++..+...+.....++
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555666666665555555444444443
No 97
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.38 E-value=29 Score=47.17 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=6.7
Q ss_pred chHHHHHHHH
Q 000426 716 AGQMAELDAR 725 (1525)
Q Consensus 716 ~~~~~~LE~~ 725 (1525)
.|.+.+||..
T Consensus 250 ~GmLEYLEDI 259 (1293)
T KOG0996|consen 250 EGMLEYLEDI 259 (1293)
T ss_pred chHHHHHHHH
Confidence 4777777763
No 98
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.36 E-value=15 Score=43.87 Aligned_cols=70 Identities=26% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 879 TGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEA----------KAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKK 948 (1525)
Q Consensus 879 ~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~a----------k~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~ 948 (1525)
...+......+...+.++..++..+...+..++.. .......|+.++..|+.+++-++.....+..++..
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 33444444455555566555555444333333211 11123345566666666666655555555544433
No 99
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.25 E-value=40 Score=48.37 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000426 888 KLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKAIEE 952 (1525)
Q Consensus 888 ~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l~e 952 (1525)
.|..+..+++..+...+-....+++.......+++.++++|+..+..++..+..+....+.....
T Consensus 770 ~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 770 KLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444433333333333444444555666777777777777777776665555554443
No 100
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.04 E-value=14 Score=43.13 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000426 887 DKLQKTVEDLTWRIQLEK 904 (1525)
Q Consensus 887 ~~Le~kv~el~~rl~~ek 904 (1525)
.-||++.++|+++++-+.
T Consensus 142 ~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 142 AHLEKEREQLQQQIEFEI 159 (561)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357888888888777554
No 101
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.03 E-value=30 Score=46.12 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000426 1257 QQLTAYVEKIYGMIRDNLK 1275 (1525)
Q Consensus 1257 qqL~~~~~~iy~~l~~~l~ 1275 (1525)
.+|.+.....=.-+|+.+.
T Consensus 826 rDl~a~~rels~elr~a~~ 844 (1195)
T KOG4643|consen 826 RDLVATRRELSLELRRALD 844 (1195)
T ss_pred hhHHHhhhhhhhHHHHHHH
Confidence 4455555554444444333
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.98 E-value=13 Score=44.39 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=5.8
Q ss_pred CcCChHHHHH
Q 000426 664 TRRPFFEFLN 673 (1525)
Q Consensus 664 ~r~~~~~F~~ 673 (1525)
.+++..+|++
T Consensus 8 ~~isL~dFL~ 17 (312)
T smart00787 8 EPISLQDFLN 17 (312)
T ss_pred CCccHHHHHH
Confidence 3556666665
No 103
>PRK02224 chromosome segregation protein; Provisional
Probab=93.97 E-value=36 Score=46.81 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 000426 1321 VKSLGNFLNTLKANHVPP 1338 (1525)
Q Consensus 1321 l~~L~~~~~~l~~~~v~~ 1338 (1525)
...+..+-..++..++++
T Consensus 721 ~~~~~~~~~~~~~~~~~~ 738 (880)
T PRK02224 721 ESMYGDLRAELRQRNVET 738 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 104
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.93 E-value=2.1 Score=53.95 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
++..+++.++.+|+.++.+++.++++.++...............+.+++.++..+......+++++..|+.||..|+.+
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4455666666667777777777766666655555555555555556666666666666666666555555555555443
No 105
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=16 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 916 QEVTKLQNSLQEMQAKLDEANASLV 940 (1525)
Q Consensus 916 ~E~~kLq~~l~elq~qlee~~~~l~ 940 (1525)
.+++++++++++++..+.+.+..|.
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655555444443
No 106
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.86 E-value=0.043 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.5
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yl 174 (1525)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999986
No 107
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.85 E-value=45 Score=47.49 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1009 QKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1009 ~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
+.+..+++.+.++.+.++..++.++.+++.+...+..
T Consensus 496 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 496 QAEEQELRKERDQAEEELRQARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555555544433
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.82 E-value=35 Score=46.05 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=22.2
Q ss_pred HHhhcCccccccCC-eeEEecCCCCCCCCCCHHHHHHhh
Q 000426 85 TRYELNEIYTYTGN-ILIAINPFQRLPHIYDAHMMQQYK 122 (1525)
Q Consensus 85 ~Ry~~~~iYT~~G~-iLiavNP~~~lp~~y~~~~~~~y~ 122 (1525)
.||..=.+-| -|. |+=++-|--.+|+-|++++.+.-+
T Consensus 192 SrYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 3554444433 333 556777777777778887766554
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.81 E-value=19 Score=43.00 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 964 VEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLA 1034 (1525)
Q Consensus 964 ~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~ 1034 (1525)
+..+++...+......+.+++......+.....++....+...+..+++..+|.+...|+.++.++|.-++
T Consensus 213 q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 213 QARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666555555666667777777777788888887776443
No 110
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.78 E-value=28 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=14.5
Q ss_pred ccCCCCCHHHH-------HHHHhcCccCCC
Q 000426 1427 DLCPVLSIQQL-------YRISTMYWDDKY 1449 (1525)
Q Consensus 1427 ~~C~~Ls~~QI-------~kil~~Y~~d~~ 1449 (1525)
+.|.+|--.+| |||-++|.+.++
T Consensus 632 ~ac~sL~Gykid~~~~s~~ritS~ya~~~~ 661 (716)
T KOG4593|consen 632 DACYSLLGYKIDFTLESRYRLTSGYAEEPD 661 (716)
T ss_pred HHHHhhhhhhhhcccccceeeeeeccCCCc
Confidence 45666666655 567778885444
No 111
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.74 E-value=11 Score=51.20 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCeEEEecccceeecccCchhhh-----cCCCcHHHHHHHhh
Q 000426 538 TDFAIAHYAGEVMYQSDQFLDKN-----KDYVVPEHQDLLSA 574 (1525)
Q Consensus 538 ~~F~I~Hyag~V~Y~~~gfleKN-----~D~~~~~~~~ll~~ 574 (1525)
++-...-|.-.+.-+.+|-+.-+ -|+++||++.-+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 45555556555666666665554 37888887765543
No 112
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.72 E-value=13 Score=40.79 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADET 994 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~el 994 (1525)
++..|..++.++..+.+-+..+..++
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33444444444444444444444433
No 113
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=15 Score=45.56 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 1013 DETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 1013 ~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
..-+.++..|.-++.++++.+.-|.++.+
T Consensus 190 R~sQVEyEglkheikRleEe~elln~q~e 218 (772)
T KOG0999|consen 190 RQSQVEYEGLKHEIKRLEEETELLNSQLE 218 (772)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777778888887776665554
No 114
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.56 E-value=20 Score=43.86 Aligned_cols=16 Identities=38% Similarity=0.339 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 000426 399 DGLAKTIYSRLFDWLV 414 (1525)
Q Consensus 399 dalak~lY~~LF~wiV 414 (1525)
-.|++.+|+-|=+|+=
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 3688888888877754
No 115
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.14 Score=63.34 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 133 VFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 133 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 344445566667667889999999999999999988887654
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.49 E-value=9.4 Score=45.66 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 1003 ETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 1003 ~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
.+.+...+++++++.++..+...++...++.++++++++.+
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
No 117
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.44 E-value=1.8 Score=49.05 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 975 AEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 975 ~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
.+...|+.+...+.+..+++++....+..++.-...++.-++.++....+.++.|+.++..+++|++..++.
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555444555667777888888888888888888888888876553
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.17 E-value=9.2 Score=42.83 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDE-TEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~e-le~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
...+..+++++..|+-+.+.++++...++.+..++....+.....+.+ ..-+.--|+..+..|.+.++.-+.++.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544444333322222211 122333344444444444444444443
No 119
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.02 E-value=58 Score=46.28 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=7.7
Q ss_pred EEeecccccccccC
Q 000426 431 IGVLDIYGFESFKS 444 (1525)
Q Consensus 431 IgiLDI~GFE~f~~ 444 (1525)
|.=|-+.||.+|..
T Consensus 3 lk~i~l~gFKSF~~ 16 (1163)
T COG1196 3 LKRIELKGFKSFAD 16 (1163)
T ss_pred eeEEEEECcccCCC
Confidence 44455666666543
No 120
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.98 E-value=43 Score=44.67 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 983 ALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 983 el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
++..++..+.+.+.++.+...+...+.++++++..+...|..+-..++..+.++++++..-.+.
T Consensus 433 ~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 433 EIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444455556677788888888888888888888888888887655443
No 121
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.87 E-value=20 Score=40.44 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1020 IQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1020 ~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
+.|-..+++|.++..+|..|+++-.
T Consensus 160 e~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 160 EVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888887654
No 122
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.86 E-value=1.1 Score=50.00 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
.+..+++|+++++.++....+... ....++++........+.+++.++++|++++..++.++..|+.+|+.++..
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444433 223333444444555666788888888888888888888888888877653
No 123
>PRK01156 chromosome segregation protein; Provisional
Probab=92.86 E-value=53 Score=45.36 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1012 LDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1012 l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
+++...++..+++++..++.++.+++.+...++.
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666555553
No 124
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.82 E-value=1.5 Score=52.49 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
+++.++.|.+.+.+++..+++..+++++++.+++.+..++..+-.+.-.....++.++..++++...++.+.+...++
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555444444444333333222333334444444444444444444444444433
No 125
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.82 E-value=36 Score=43.35 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1007 EKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1007 ~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
+..+++.++++.+.-++.+-+.+.++.++|...+..|++
T Consensus 414 E~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 414 ENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666654
No 126
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.79 E-value=0.074 Score=54.44 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999988864
No 127
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.75 E-value=27 Score=41.72 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 877 RETGALKEAKDKLQKTVEDLTWRIQLEK 904 (1525)
Q Consensus 877 r~~~~l~~~~~~Le~kv~el~~rl~~ek 904 (1525)
+.+......+..|++++..|...+...+
T Consensus 110 k~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 110 KDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 4445555566778888888777766443
No 128
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.66 E-value=4.3 Score=44.91 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 979 GLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 979 ~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
..+..++.++..+.++.++..++.++..+.+..++++.....+++.....+++.++++++..+
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444555556666666666666666666666555443
No 129
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.63 E-value=19 Score=39.54 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 990 RADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 990 ~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
+.+..+.+++.+...+.+...+.+-.+..+..|+++..+||.++.+...+...+.
T Consensus 138 ~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~ 192 (205)
T KOG1003|consen 138 KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAK 192 (205)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHH
Confidence 3333344444333333333444445556666666666666666666665554443
No 130
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.62 E-value=0.78 Score=51.03 Aligned_cols=63 Identities=33% Similarity=0.363 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 983 ALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 983 el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
.+..++.....++.++..+..++.+..+.++.+..++..|+-++..+|+++..|+.||..|-+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444445555666677777777888888888888888877643
No 131
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.61 E-value=24 Score=40.79 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 1015 TEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 1015 le~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
..+++..-.+.++.+++++..|+.|.+.|+.+
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555566666666666666666544
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.60 E-value=28 Score=41.53 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 917 EVTKLQNSLQEMQAKLDEANASLV 940 (1525)
Q Consensus 917 E~~kLq~~l~elq~qlee~~~~l~ 940 (1525)
++..|+.++++|+.++.++....+
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHH
Confidence 455566666666666666654433
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.56 E-value=6.3 Score=51.05 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 1008 KQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 1008 ~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
...+++.++.+++.+..++..-++.+..|..+++.+
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555666666666666666666666666666654
No 134
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.52 E-value=72 Score=46.05 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.4
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
-..+|+|.+|||||.+.-.++.+|..-+
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~~ 52 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDGK 52 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999998643
No 135
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.50 E-value=0.087 Score=57.20 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=23.3
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
+...+...+|+|.|++|+|||...+.+++++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456778999999999999999999999998754
No 136
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.22 E-value=0.097 Score=53.14 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999996
No 137
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.19 E-value=45 Score=42.98 Aligned_cols=196 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 000426 850 KRGSIKAQTRWRGRIARRELRKLKMAARETGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQE------------ 917 (1525)
Q Consensus 850 r~a~i~iQ~~~R~~~ARkel~~lk~~ar~~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E------------ 917 (1525)
...-+..+..-......+.+..-...-.....-......|+.++......+...+.......+.+..+
T Consensus 201 e~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~ 280 (522)
T PF05701_consen 201 ERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQ 280 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHHHhHHhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 000426 918 --VTKLQNSLQEMQAKLDEANASLVKEREAAKKAIEEAPPVVKEKEVLVEDTK----KIESLTAEVEGLKTALESEKKRA 991 (1525)
Q Consensus 918 --~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l~e~~~~~~e~~~l~~~~~----~~~~L~~e~~~L~~el~~le~~~ 991 (1525)
+.....++++.+..|+..+......+.....+..++.++..++..+..... .+..|+.++...+.++......-
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 992 DETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 992 ~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
.+....+..+...+..+..+.++.+.+....+.++..+...+...+..+.....
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.06 E-value=20 Score=46.52 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000426 917 EVTKLQNSLQEMQAKLDEA 935 (1525)
Q Consensus 917 E~~kLq~~l~elq~qlee~ 935 (1525)
|+..||.-...||.||.+.
T Consensus 428 El~sLqSlN~~Lq~ql~es 446 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQES 446 (861)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5555666555566666554
No 139
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.97 E-value=0.2 Score=51.23 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.6
Q ss_pred cCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 147 EGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 147 ~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
......|+|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998886
No 140
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.96 E-value=9.7 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=15.8
Q ss_pred CCCCCccchhHHhhchHHHHHHHhhcCc-cccc
Q 000426 1364 RECCSFSNGEYVKAGLAELEHWCYKATD-EYAG 1395 (1525)
Q Consensus 1364 r~~Cs~s~G~qir~nls~LE~W~~~~~~-~~~~ 1395 (1525)
+|..-|||- ++-.|+.+.|. +|++
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL~eya~ 780 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGLGEYAN 780 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCHHHHhh
Confidence 456678884 56678888764 4443
No 141
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.84 E-value=0.17 Score=58.82 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=24.1
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999987765
No 142
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.81 E-value=37 Score=41.24 Aligned_cols=12 Identities=50% Similarity=0.562 Sum_probs=5.9
Q ss_pred HhhHHHHHHHHH
Q 000426 1034 ANLESENQVLRQ 1045 (1525)
Q Consensus 1034 ~~Le~E~~~Lrq 1045 (1525)
.+|+.|...||+
T Consensus 406 ~eleqevkrLrq 417 (502)
T KOG0982|consen 406 IELEQEVKRLRQ 417 (502)
T ss_pred HHHHHHHHHhcc
Confidence 345555555544
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.78 E-value=0.15 Score=46.75 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 144
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.77 E-value=0.13 Score=56.14 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.9
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877764
No 145
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.74 E-value=58 Score=43.27 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1007 EKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1007 ~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
++..++++++.++..++.++..+++++..++.++..++
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555544444444444444443
No 146
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.70 E-value=37 Score=40.96 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADE 993 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~e 993 (1525)
...++.|+.|++.|+..+...++.+.+
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888777776665543
No 147
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.65 E-value=88 Score=45.22 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 000426 841 KATAYYKRLKRGSIKAQTRWRG 862 (1525)
Q Consensus 841 ~ar~~y~~~r~a~i~iQ~~~R~ 862 (1525)
.....+..++..+..|+...+.
T Consensus 658 ~l~e~~~~l~~ev~~ir~~l~k 679 (1822)
T KOG4674|consen 658 KLQEDFDSLQKEVTAIRSQLEK 679 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666554433
No 148
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.60 E-value=0.28 Score=55.88 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred hcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 146 NEGKSNSILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 146 ~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 4577889999999999999999999999986554
No 149
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.60 E-value=23 Score=43.99 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=6.7
Q ss_pred HHHHHHHHhhHHHHHHH
Q 000426 1027 TRLEEKLANLESENQVL 1043 (1525)
Q Consensus 1027 ~~LEeki~~Le~E~~~L 1043 (1525)
..++.++..++.++..+
T Consensus 249 ~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 249 TEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 150
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.12 Score=60.65 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.5
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999999999985
No 151
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.37 E-value=5.3 Score=40.87 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 971 ESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETE 1016 (1525)
Q Consensus 971 ~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele 1016 (1525)
.....++..|+.++.+++.+++.+-+-+-+.....++++..+.+++
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444444444444444444444433
No 152
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.34 E-value=21 Score=37.52 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 000426 921 LQNSLQEMQAKLDE 934 (1525)
Q Consensus 921 Lq~~l~elq~qlee 934 (1525)
|+..+..|++.|+.
T Consensus 22 le~~v~~LEreLe~ 35 (140)
T PF10473_consen 22 LEDHVESLERELEM 35 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 153
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.30 E-value=11 Score=44.60 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
.+..+..+++.++.+++..++++.++...+......+.......+........++.++...+.++..++.+..
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333332222222222333333344444444444444444443
No 154
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.30 E-value=19 Score=47.73 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 979 GLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 979 ~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
.++.++..-++........+++.+...++...++...+-++..+.++-.++..++..|+.+...|
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444455555566666666666677777777777777777666555
No 155
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.23 E-value=54 Score=41.96 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 000426 965 EDTKKIESLTAEVEGLKTA 983 (1525)
Q Consensus 965 ~~~~~~~~L~~e~~~L~~e 983 (1525)
....++..|..+++.++..
T Consensus 289 ~kd~~i~~L~~di~~~~~S 307 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEAS 307 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 156
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.12 E-value=39 Score=45.30 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=4.7
Q ss_pred HHHhCCCCHHH
Q 000426 1330 TLKANHVPPFL 1340 (1525)
Q Consensus 1330 ~l~~~~v~~~l 1340 (1525)
.++..+|++.+
T Consensus 851 ~~~~~n~ne~~ 861 (1072)
T KOG0979|consen 851 ALKFENVNEDA 861 (1072)
T ss_pred HHHHhcCChHH
Confidence 33444444443
No 157
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.12 E-value=16 Score=45.21 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
.+++..+.+++.+|..++.++.+++..+.-+.+++..-+......-++++.+...+++++.+..+...+-++|++.|+
T Consensus 225 t~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 225 TKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555666666666666665555444433333322222222233444444445555555555555556666554
No 158
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.11 E-value=0.33 Score=50.48 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.4
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.....|+++|+.|||||+.+|.+.+.|-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4566899999999999999999988873
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.00 E-value=0.15 Score=51.90 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.8
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999985
No 160
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.94 E-value=45 Score=40.56 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1022 LQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1022 Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
|..++.+|++....|+++|..|..
T Consensus 408 leqevkrLrq~nr~l~eqneelng 431 (502)
T KOG0982|consen 408 LEQEVKRLRQPNRILSEQNEELNG 431 (502)
T ss_pred HHHHHHHhccccchhhhhhhhhhh
Confidence 555555566555566666655543
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.90 E-value=33 Score=44.67 Aligned_cols=114 Identities=14% Similarity=0.250 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 924 SLQEMQAKLDEANASLVKEREAAKKAIEEAPPVVKEKEVLVEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQE 1003 (1525)
Q Consensus 924 ~l~elq~qlee~~~~l~~e~e~~~~~l~e~~~~~~e~~~l~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~ 1003 (1525)
++.+|+.+.+..+.-|..+...++....... .+ ......+++.+..+...+..++...++.+.+|..+++.+.+
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~---~e---~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRE---SE---SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc---hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555554443322111 00 01112344455555555555554444444444444443322
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 1004 TSE--EKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 1004 ~~e--~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
... .-.+++-+.-..+.+-++++.+.-.....|..|++.+
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1133444444444444455555444445555555444
No 162
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.75 E-value=39 Score=43.76 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000426 1015 TEKKVIQLQESLTRLEEKLANLESEN 1040 (1525)
Q Consensus 1015 le~~~~~Lq~~l~~LEeki~~Le~E~ 1040 (1525)
++.+...|.+.++.|++.-..|..-.
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~T~ 265 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQATA 265 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444444333
No 163
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=90.75 E-value=1.1 Score=55.76 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 134 FAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 134 favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.+++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33344577777777899999999999999999999988765
No 164
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.74 E-value=10 Score=46.70 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQA 1047 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq~ 1047 (1525)
++++.+.+++..+..+...+...+-+++++.....-+.+++..-+......-.+++.+++++|++..+...+.+.-..+.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666665555555555555555555666667777776666666665555444
Q ss_pred hhcC
Q 000426 1048 VSIA 1051 (1525)
Q Consensus 1048 ~~~~ 1051 (1525)
..++
T Consensus 299 k~lr 302 (596)
T KOG4360|consen 299 KCLR 302 (596)
T ss_pred Hhhc
Confidence 4444
No 165
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.73 E-value=0.18 Score=56.26 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHh
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988863
No 166
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.72 E-value=38 Score=40.90 Aligned_cols=11 Identities=45% Similarity=0.326 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 000426 827 TKAAIIIQARW 837 (1525)
Q Consensus 827 ~~AAi~IQ~~~ 837 (1525)
..|.+.||..+
T Consensus 84 ~~Asv~IQara 94 (552)
T KOG2129|consen 84 LLASVEIQARA 94 (552)
T ss_pred hhhhhHHhhcc
Confidence 35667777643
No 167
>PRK06696 uridine kinase; Validated
Probab=90.70 E-value=0.31 Score=55.38 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 135 AVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 135 avA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+|+..+.. ..+..--|.|+|.||||||+.|+.+.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555431 3556788999999999999999999999854
No 168
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.68 E-value=0.18 Score=56.22 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998876
No 169
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.57 E-value=0.28 Score=58.70 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=27.6
Q ss_pred HHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 141 YRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 141 y~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+.++..+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998863
No 170
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.56 E-value=0.22 Score=55.85 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.+.--|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999887
No 171
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.44 E-value=0.21 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.2
Q ss_pred CCCcEEEecCCCCCChhHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~ 171 (1525)
+..+.+.|.|+||||||+.++.++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345789999999999999999976
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.40 E-value=21 Score=44.26 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 1014 ETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 1014 ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
+...+...++.++..++.++..++..+.
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666666666665554
No 173
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.39 E-value=0.2 Score=55.69 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998887
No 174
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.34 E-value=0.19 Score=54.62 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.4
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999998876
No 175
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=4.3 Score=51.08 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEE---KQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~---~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
...++.|+.|+..|+.++++++..+++++.++..+..+... ..++++..+.++..|+.++.+-..++++|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666544332 244666777788888888888888888888888777
Q ss_pred HH
Q 000426 1044 RQ 1045 (1525)
Q Consensus 1044 rq 1045 (1525)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 64
No 176
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.29 E-value=0.22 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3679999999999999999777664
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.27 E-value=29 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.0
Q ss_pred ccCCCeeeeccCCCCCCCCc
Q 000426 616 NSTEPHYIRCVKPNNLLKPA 635 (1525)
Q Consensus 616 ~~t~~hfIrCIkPN~~k~p~ 635 (1525)
..|..+||.|=+|.....|.
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~ 440 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPN 440 (717)
T ss_pred CCcceEEEeccCCCCCCCCC
Confidence 34557999999998776654
No 178
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.26 E-value=67 Score=41.44 Aligned_cols=176 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 870 RKLKMAARETGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKA 949 (1525)
Q Consensus 870 ~~lk~~ar~~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~ 949 (1525)
++...-...+.........--.++.++...+..++....++ +.-..+|.-+...+..+.......+++..++....
T Consensus 450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~EL----t~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~ 525 (786)
T PF05483_consen 450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTEL----TVNCNKLSLEKKQLAQETSDMALELKKQQEDINNS 525 (786)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q ss_pred HHhCChhhhhHHHhHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 950 IEEAPPVVKEKEVLVED-TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTR 1028 (1525)
Q Consensus 950 l~e~~~~~~e~~~l~~~-~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~ 1028 (1525)
-.+..+..+++..+++. .....+|+.-.+.++..-++.+.+.+..+.......-+.....+++.-++.++..|.++++.
T Consensus 526 k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEn 605 (786)
T PF05483_consen 526 KKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVEN 605 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHhhh
Q 000426 1029 LEEKLANLESENQVLRQQAVS 1049 (1525)
Q Consensus 1029 LEeki~~Le~E~~~Lrqq~~~ 1049 (1525)
....+.+|..+|..|+.+...
T Consensus 606 k~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 606 KNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.20 E-value=26 Score=36.54 Aligned_cols=13 Identities=8% Similarity=0.330 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000426 1010 KKLDETEKKVIQL 1022 (1525)
Q Consensus 1010 ~~l~ele~~~~~L 1022 (1525)
.+++++..++.-|
T Consensus 112 ~r~~dL~~QN~lL 124 (132)
T PF07926_consen 112 QRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 180
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=52 Score=43.12 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=18.5
Q ss_pred ceeecccCchhhhcCCCcHHHHHHHhhC
Q 000426 548 EVMYQSDQFLDKNKDYVVPEHQDLLSAS 575 (1525)
Q Consensus 548 ~V~Y~~~gfleKN~D~~~~~~~~ll~~S 575 (1525)
.|-|.-..|+-+|-|--..=+..++..|
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 4778888888888875554444555544
No 181
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=31 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh
Q 000426 354 HLKTAAELLMCDPVALEDALCK 375 (1525)
Q Consensus 354 ~l~~~a~LLgv~~~~L~~~L~~ 375 (1525)
.++.+..||.+-+-++.++|..
T Consensus 142 aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 3455566666666666666554
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.06 E-value=2.5 Score=50.62 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 972 SLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 972 ~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
++.+++.+++.+.+++.+.+.+++.+..+++.+-++.-+.....+.+...++++...++.++.....++..|++
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444433445555556666666666677777777777777777654
No 183
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.04 E-value=0.33 Score=56.61 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=26.3
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 73 ~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 73 RKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 4444322 347999999999999999999998853
No 184
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.95 E-value=0.21 Score=55.43 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=23.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
|-|+|.||||||+.|+.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 185
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.94 E-value=21 Score=42.21 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1017 KKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1017 ~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
.++..|++.+.....-+.+..+|+..+|
T Consensus 276 aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 276 AELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443
No 186
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=89.91 E-value=0.5 Score=58.39 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 133 VFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 133 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
++...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 34444455556666788999999999999999998888753
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.83 E-value=0.22 Score=50.31 Aligned_cols=28 Identities=36% Similarity=0.499 Sum_probs=24.8
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998888654
No 188
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.81 E-value=28 Score=45.24 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 000426 1022 LQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 1022 Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
-..++.+|++-...|..-+..
T Consensus 534 rDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 534 RDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 189
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.69 E-value=34 Score=44.59 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=6.7
Q ss_pred eccceeeccchH
Q 000426 707 IGKTKIFLRAGQ 718 (1525)
Q Consensus 707 ~G~TkVF~r~~~ 718 (1525)
.|.|...|..+.
T Consensus 59 ~Ges~~~f~~w~ 70 (569)
T PRK04778 59 TGQSEEKFEEWR 70 (569)
T ss_pred CcccHHHHHHHH
Confidence 566666665543
No 190
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.65 E-value=4 Score=36.58 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000426 989 KRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLES 1038 (1525)
Q Consensus 989 ~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~ 1038 (1525)
.....+.+++...+..+-....++.+.+.++..|..++..|++++.++.+
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444555555555556667777777777777777777666655543
No 191
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=89.58 E-value=46 Score=39.12 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1012 LDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1012 l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
++++..+...|..++++.+.+-..|++|+.-|+
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk 279 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLK 279 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555455555555444
No 192
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.50 E-value=0.29 Score=54.90 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.+..-|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3557788999999999999999988764
No 193
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.43 E-value=40 Score=37.61 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000426 977 VEGLKTALESEKKRADETERKSKEAQETSEE----KQKKLDETEKKVIQLQESLTRLEEKLANLESE 1039 (1525)
Q Consensus 977 ~~~L~~el~~le~~~~ele~~~~e~~~~~e~----~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E 1039 (1525)
.+.|..+++.++.++++.++++..++..++- ...++.....+...++.++..+.+++..|...
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655543321 23334444444444555554444444444433
No 194
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.43 E-value=1e+02 Score=42.41 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhCCCCH
Q 000426 1322 KSLGNFLNTLKANHVPP 1338 (1525)
Q Consensus 1322 ~~L~~~~~~l~~~~v~~ 1338 (1525)
..|+...++|..+-+..
T Consensus 1024 ~~L~qlr~~l~k~~l~~ 1040 (1317)
T KOG0612|consen 1024 MELSQLRTKLNKLRLKN 1040 (1317)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 33444444444443333
No 195
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.39 E-value=0.48 Score=56.99 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=35.9
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 118 MQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 118 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.+.|+-..+.++-.|-..+.. .......+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~--L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVER--LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHH--HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 445655544444333222221 23334445545799999999999999999999886
No 196
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.39 E-value=0.22 Score=56.42 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.5
Q ss_pred EEEecCCCCCChhHHHHHH
Q 000426 152 SILVSGESGAGKTETTKML 170 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~ 170 (1525)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987654
No 197
>PRK08233 hypothetical protein; Provisional
Probab=89.38 E-value=0.23 Score=54.01 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.7
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998885
No 198
>PTZ00121 MAEBL; Provisional
Probab=89.38 E-value=1.1e+02 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=22.9
Q ss_pred cccCCCCCChHHHHHHHHHHhhcCccccccCC
Q 000426 67 DMTKLSYLHEPGVLRNLKTRYELNEIYTYTGN 98 (1525)
Q Consensus 67 Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~ 98 (1525)
|||-=..+++..++.....|......|||-|.
T Consensus 163 dmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 163 DMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 77766667776677667677767778888764
No 199
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.37 E-value=0.37 Score=51.55 Aligned_cols=29 Identities=38% Similarity=0.447 Sum_probs=25.4
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998664
No 200
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.25 E-value=13 Score=43.20 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLAN 1035 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~ 1035 (1525)
..+..+..+++..+..+..+......++.+++..+.+++..++++..+++-.-...++++++|++++.
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777888877776555555666666655543
No 201
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.22 E-value=0.26 Score=53.00 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla 175 (1525)
-|+|+|++|||||+.++.+.+.|-
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999988763
No 202
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.22 E-value=39 Score=38.84 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1017 KKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1017 ~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
.++..|++.+..-=++...||.|...|.
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3444555555544445556777777765
No 203
>PTZ00301 uridine kinase; Provisional
Probab=89.22 E-value=0.28 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|-|+|-||||||+.|+.+.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 77999999999999998887764
No 204
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.16 E-value=0.29 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|+|+|.+|||||+.++.+...+-
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999988763
No 205
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.03 E-value=53 Score=38.50 Aligned_cols=80 Identities=26% Similarity=0.325 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHHH-------HHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQET-------SE-------EKQKKLDETEKKVI-------QLQESLT 1027 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~-------~e-------~~~~~l~ele~~~~-------~Lq~~l~ 1027 (1525)
.+..|...++-|-+++...+.+...++.++...... ++ ..+-++.+++..++ ..-..-+
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqe 217 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQE 217 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555555555444433222 22 22333333333322 2333345
Q ss_pred HHHHHHHhhHHHHHHHHHHhh
Q 000426 1028 RLEEKLANLESENQVLRQQAV 1048 (1525)
Q Consensus 1028 ~LEeki~~Le~E~~~Lrqq~~ 1048 (1525)
.+|+++..|.+||..|+++..
T Consensus 218 s~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999998754
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.01 E-value=4.1 Score=44.81 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000426 976 EVEGLKTA 983 (1525)
Q Consensus 976 e~~~L~~e 983 (1525)
+++.++.+
T Consensus 157 eleele~e 164 (290)
T COG4026 157 ELEELEAE 164 (290)
T ss_pred HHHHHHHH
Confidence 33333333
No 207
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.97 E-value=0.3 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|-|+|.||||||+.++.+...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999988863
No 208
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.92 E-value=0.61 Score=52.67 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 140 AYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 140 Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344444567889999999999999999999988763
No 209
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.84 E-value=14 Score=43.59 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
.++..++.++..++..++...+++++..+++.+.+..++.....+.......+...+.+..+...+...+.....+
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQL 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555444444444333333444444444444444444444443
No 210
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.81 E-value=5.4 Score=44.77 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 000426 922 QNSLQEMQAKLD 933 (1525)
Q Consensus 922 q~~l~elq~qle 933 (1525)
++++++++.+++
T Consensus 99 e~el~~l~~~l~ 110 (206)
T PRK10884 99 ENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 211
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.78 E-value=0.65 Score=56.79 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=40.2
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHHHHHhc-CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 117 MMQQYKGAPFGELSPHVFAVADVAYRAMVNE-GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 117 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
..++|+-..+.++--|-..+. ..+.+... +-+++++++|+.|+|||+.++.+.+.|-
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 356777766666643333332 23444444 5688999999999999999999999885
No 212
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.76 E-value=3.3 Score=37.29 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 994 TERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 994 le~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
++.+++..-+...-++-+++++..+...|..+.+.+......|+.||+.|+++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444344444556677777777778888887777788888888887765
No 213
>PRK07261 topology modulation protein; Provisional
Probab=88.70 E-value=0.33 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yl 174 (1525)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999886654
No 214
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.69 E-value=0.34 Score=52.74 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=25.7
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+..-|+++|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45568999999999999999999999863
No 215
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.65 E-value=0.33 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 216
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=88.55 E-value=1.5 Score=52.36 Aligned_cols=130 Identities=12% Similarity=0.136 Sum_probs=72.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCCCCccch--hHHhhchHHHHHHHhhcC
Q 000426 1313 LIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNG--EYVKAGLAELEHWCYKAT 1390 (1525)
Q Consensus 1313 ~~~~~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~fIn~~lfN~LllRr~~Cs~s~G--~qir~nls~LE~W~~~~~ 1390 (1525)
++..+.+++.+|.++++.. ...+|+.+.+-++...|.+|+..+.+-|+ ..+.-.++.| .++...+..||.++.+..
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll-~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLL-SDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT----------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 4558899999999998654 56899999999999999999999998875 5566666555 578888999999999861
Q ss_pred c--ccccchHhhhhhHHHHHHHHhhcCCCcCCHhHHHhccCCCCCHHHHHHHHhcC
Q 000426 1391 D--EYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMY 1444 (1525)
Q Consensus 1391 ~--~~~~~a~~~L~~l~Qa~~lL~~~~k~~~~~~~i~~~~C~~Ls~~QI~kil~~Y 1444 (1525)
. .-.++..++|..|+|.+.||....-..--...+...--+.++|..+..||..|
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~ 310 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKL 310 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH--------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhc
Confidence 0 23667789999999999999764222110002333346777777777776654
No 217
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.50 E-value=0.32 Score=53.61 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.0
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999888764
No 218
>PRK06762 hypothetical protein; Provisional
Probab=88.41 E-value=0.35 Score=51.97 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.4
Q ss_pred cEEEecCCCCCChhHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yl 174 (1525)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999988
No 219
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.38 E-value=8.8 Score=46.73 Aligned_cols=16 Identities=19% Similarity=0.798 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 000426 889 LQKTVEDLTWRIQLEK 904 (1525)
Q Consensus 889 Le~kv~el~~rl~~ek 904 (1525)
++..+....|+++.|+
T Consensus 187 ~es~vd~~eWklEvER 202 (359)
T PF10498_consen 187 IESKVDPAEWKLEVER 202 (359)
T ss_pred ccccCCHHHHHHHHHH
Confidence 3444444444444443
No 220
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.37 E-value=0.3 Score=56.74 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.1
Q ss_pred cEEEecCCCCCChhHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKML 170 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~ 170 (1525)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999986654
No 221
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.37 E-value=81 Score=41.02 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=6.0
Q ss_pred ceehHhHHHHHHHH
Q 000426 1175 AYWLSNASTLLLLL 1188 (1525)
Q Consensus 1175 ayWLSNt~~Ll~~l 1188 (1525)
+|=--+++++--++
T Consensus 439 SyAvrrv~tiqGL~ 452 (739)
T PF07111_consen 439 SYAVRRVHTIQGLM 452 (739)
T ss_pred HHHhcccchhHHHH
Confidence 33333444444443
No 222
>PRK06547 hypothetical protein; Provisional
Probab=88.18 E-value=0.66 Score=50.55 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=25.1
Q ss_pred hcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 146 NEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 146 ~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
..+...-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999988765
No 223
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.15 E-value=39 Score=40.31 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=55.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 964 VEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQ------------ETSEEKQKKLDETEKKVIQLQESLTRLEE 1031 (1525)
Q Consensus 964 ~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~------------~~~e~~~~~l~ele~~~~~Lq~~l~~LEe 1031 (1525)
.+..+.+..|..|++.|++.+.+++....-+.+++...+ .+-+.+..+++.++.++.+|+.++..+-.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777766666666555555544432 22345667777888888888888888888
Q ss_pred HHHhhHHHHHHHHHHh
Q 000426 1032 KLANLESENQVLRQQA 1047 (1525)
Q Consensus 1032 ki~~Le~E~~~Lrqq~ 1047 (1525)
+.+++..|-...+..+
T Consensus 155 EkeEl~~ERD~yk~K~ 170 (319)
T PF09789_consen 155 EKEELVTERDAYKCKA 170 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8778777777666543
No 224
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.14 E-value=0.91 Score=53.57 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
+..--|-|+|.||||||+.++.+...|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 456778899999999999999988887643
No 225
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.14 E-value=5.6 Score=44.28 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 972 SLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 972 ~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
.....+..++.++..++.++.+++..+.+....++.+..++..++-+...+++.+.+++++..+|=+..-.
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555555555555555555566666666666666666655554433
No 226
>PF05729 NACHT: NACHT domain
Probab=88.13 E-value=0.4 Score=50.78 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.8
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999999888543
No 227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.12 E-value=0.42 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.8
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887665
No 228
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.12 E-value=0.42 Score=52.07 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.8
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla 175 (1525)
++++.|.||.|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 229
>PRK08118 topology modulation protein; Reviewed
Probab=88.11 E-value=0.39 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
+-|+|.|.||||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988764
No 230
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=13 Score=37.73 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1005 SEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1005 ~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
.+++..+++.++.++..|+++.+++++++++|++++...-
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777888888888888888888888888877653
No 231
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.03 E-value=90 Score=39.95 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000426 739 RRIRTHIARRRFIALREATIVLQ 761 (1525)
Q Consensus 739 ~~~R~~~~Rk~y~~~r~aai~IQ 761 (1525)
-..-.|..|.+|+........++
T Consensus 49 DRLA~YIekVR~LEaqN~~L~~d 71 (546)
T KOG0977|consen 49 DRLAVYIEKVRFLEAQNRKLEHD 71 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888877766655544
No 232
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.98 E-value=0.34 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4469999999999999999998765
No 233
>PF12846 AAA_10: AAA-like domain
Probab=87.96 E-value=0.42 Score=56.06 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=25.9
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
|..++|.|.||+|||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999998765
No 234
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.93 E-value=1e+02 Score=40.47 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=5.7
Q ss_pred ccCCCCCcccc
Q 000426 1480 LDDDSSIPFSV 1490 (1525)
Q Consensus 1480 lD~~~~~pf~~ 1490 (1525)
|..+.+|||-+
T Consensus 594 L~~~pcipffy 604 (617)
T PF15070_consen 594 LGSNPCIPFFY 604 (617)
T ss_pred CCCCCccccee
Confidence 44455556543
No 235
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.84 E-value=0.39 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.5
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~ 177 (1525)
|.|.|+||.|||..++.++++|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999998853
No 236
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.83 E-value=0.46 Score=51.07 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.3
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
....|++.|.+|||||+.++.+-+.|.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999988873
No 237
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.74 E-value=47 Score=36.35 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000426 921 LQNSLQEMQAKLDEANASL 939 (1525)
Q Consensus 921 Lq~~l~elq~qlee~~~~l 939 (1525)
|+-+...+..++++-+..|
T Consensus 47 Lkien~~l~~kIeERn~eL 65 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 238
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.68 E-value=13 Score=47.49 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=82.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCCCCccchhHHhhchHHHHHHHhhcCcc
Q 000426 1313 LIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDE 1392 (1525)
Q Consensus 1313 ~~~~~~~il~~L~~~~~~l~~~~v~~~li~q~f~Qlf~fIn~~lfN~LllRr~~Cs~s~G~qir~nls~LE~W~~~~~~~ 1392 (1525)
++......+..|...+..|+.. +++.....+..++..-|+-.++++++++. -.|-.-|.|+.+=+ +.|+.--+ .
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~---~~L~~~~~-~ 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDM---RALFSVFS-Q 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHH---HHHHTTS---
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHH---HHHHHHHH-h
Confidence 3446778899999999999999 99999999999999999999999999976 33444456666555 44444433 3
Q ss_pred cccchHhhhhhHHHHHHHHhhcCCCcCCHh--------------HHHhcc-CCCCCHHHHHHHHh
Q 000426 1393 YAGSAWDELKHIRQAIGFLVIHQKPKKTLD--------------EISHDL-CPVLSIQQLYRIST 1442 (1525)
Q Consensus 1393 ~~~~a~~~L~~l~Qa~~lL~~~~k~~~~~~--------------~i~~~~-C~~Ls~~QI~kil~ 1442 (1525)
+....-..++.|.+|+.||.++..+...+. ++..++ =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 555555799999999999998765433221 121111 24577777777764
No 239
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.64 E-value=0.38 Score=58.39 Aligned_cols=26 Identities=35% Similarity=0.670 Sum_probs=23.7
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999998875
No 240
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.62 E-value=0.34 Score=50.73 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|+|.|.||||||+.++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999988763
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=87.55 E-value=58 Score=37.18 Aligned_cols=28 Identities=14% Similarity=0.438 Sum_probs=17.0
Q ss_pred cchhHHHHHH----hhCCCCcCChHHHHHhhc
Q 000426 649 GGVLEAIRIS----CAGYPTRRPFFEFLNRFG 676 (1525)
Q Consensus 649 ~gvle~iri~----~~Gyp~r~~~~~F~~ry~ 676 (1525)
+|..+.+++. +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 3444444443 335888888888876544
No 242
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.51 E-value=0.35 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.2
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.+.|+|+|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999886554
No 243
>PRK06315 type III secretion system ATPase; Provisional
Probab=87.49 E-value=0.8 Score=56.95 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 140 AYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 140 Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
|-..+..-++.|.+.|.|+||+|||+..+.++++.
T Consensus 154 aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 154 CIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 34445566789999999999999999999998766
No 244
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.48 E-value=67 Score=37.84 Aligned_cols=76 Identities=28% Similarity=0.386 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
++..|..+.+....++..+-++.+++.++..++..+..+...+++++..+...++.++..++..+..|.......+
T Consensus 180 ki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555666666666666666666666777777777777777777777777777666655443
No 245
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.48 E-value=56 Score=44.20 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=12.9
Q ss_pred CHhHHHhccCCCCCHHHHHHHH
Q 000426 1420 TLDEISHDLCPVLSIQQLYRIS 1441 (1525)
Q Consensus 1420 ~~~~i~~~~C~~Ls~~QI~kil 1441 (1525)
.+|=|+.|.-|.++.....-++
T Consensus 655 ~yD~IiID~pp~~~~~d~~~l~ 676 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDMRAAA 676 (754)
T ss_pred hCCEEEEcCCCcchhHHHHHhh
Confidence 4444556777777666655443
No 246
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.45 E-value=1.2e+02 Score=40.91 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=6.0
Q ss_pred HHHHHHHHHhCC
Q 000426 691 VACKKILEKKGL 702 (1525)
Q Consensus 691 ~~~~~il~~~~~ 702 (1525)
.....+++.+++
T Consensus 85 ~v~~~VV~~L~L 96 (754)
T TIGR01005 85 EILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHHcCC
Confidence 344455555554
No 247
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.40 E-value=4.1 Score=45.52 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1019 VIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1019 ~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
...|+++.+.+..++..|-+|++.|+.
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 333333333333333344444444443
No 248
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=87.40 E-value=1.9 Score=53.83 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 134 FAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 134 favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44555677777777899999999999999999988877654
No 249
>PRK09099 type III secretion system ATPase; Provisional
Probab=87.40 E-value=1 Score=55.98 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 140 AYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 140 Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 153 ~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 153 IVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556566789999999999999999987776544
No 250
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.38 E-value=0.47 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.1
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...|+|+|.+|||||+.++.++.++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45799999999999999999988874
No 251
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.37 E-value=0.43 Score=56.72 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=24.4
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
...|+|+|..|||||+.++.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 358999999999999999999999864
No 252
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.27 E-value=1.1e+02 Score=40.07 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=4.6
Q ss_pred HHHHHHhh
Q 000426 1381 ELEHWCYK 1388 (1525)
Q Consensus 1381 ~LE~W~~~ 1388 (1525)
.+|+|+.=
T Consensus 954 tIEdwilf 961 (1265)
T KOG0976|consen 954 TIEDWILF 961 (1265)
T ss_pred ccccceeE
Confidence 46666543
No 253
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.14 E-value=0.35 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|++.|.||||||+.++.+-+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998874
No 254
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.09 E-value=0.64 Score=56.65 Aligned_cols=35 Identities=29% Similarity=0.581 Sum_probs=29.1
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+.....+.+.+|+|+|++|+|||.+++.+++.|..
T Consensus 32 ~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 32 RPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33344677889999999999999999999998863
No 255
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.06 E-value=0.37 Score=57.67 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=25.1
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
--++-+-||||||||.|+..||+-|+.-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4578899999999999999999999864
No 256
>PRK10869 recombination and repair protein; Provisional
Probab=86.97 E-value=97 Score=40.30 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=4.7
Q ss_pred ccceeecc
Q 000426 708 GKTKIFLR 715 (1525)
Q Consensus 708 G~TkVF~r 715 (1525)
|++++|+-
T Consensus 101 g~s~~~IN 108 (553)
T PRK10869 101 GRSRGFIN 108 (553)
T ss_pred CcceEEEC
Confidence 56666653
No 257
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.95 E-value=1.5e+02 Score=41.39 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 966 DTKKIESLTAEVEGLKTALESEKKRAD---ETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKL 1033 (1525)
Q Consensus 966 ~~~~~~~L~~e~~~L~~el~~le~~~~---ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki 1033 (1525)
.+++..-|.+|+..|+.++.+--+... ++--.+++.++...-.+++..+++++..++.+++++|..+.
T Consensus 1171 reker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1171 REKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777655444333 33344455555555556677777777777777777776655
No 258
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.90 E-value=0.63 Score=56.10 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.5
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
..|+|+|+.|||||+..+.++.++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999999999888774
No 259
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.89 E-value=0.66 Score=50.37 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
+...|+|.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 260
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.87 E-value=0.44 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=86.87 E-value=0.8 Score=54.97 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=40.0
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 118 MQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 118 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.++|+-..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566666655554443322 2345666667667899999999999999999998874
No 262
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.83 E-value=0.46 Score=57.84 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=25.6
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 263
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.75 E-value=0.56 Score=56.79 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 135 AVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 135 avA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577788888888899999999999999999999999888864
No 264
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.65 E-value=0.39 Score=52.30 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.1
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
+-|+|.|.||||||+.++.+++.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5699999999999999999988653
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.55 E-value=0.59 Score=49.16 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=22.9
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~ 177 (1525)
++|+|+||+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999863
No 266
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.45 E-value=0.52 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988888764
No 267
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.26 E-value=0.57 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.2
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|+|+|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 268
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.22 E-value=0.86 Score=57.07 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=39.2
Q ss_pred HHHhhCCCCCCC--CchHHHHHHHHHHHHHhcC-CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 118 MQQYKGAPFGEL--SPHVFAVADVAYRAMVNEG-KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 118 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++|+-+.+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||+.++.+.+.|-.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 346665555554 4565543 34444444 4788999999999999999999998864
No 269
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.15 E-value=1.2 Score=51.19 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 137 ADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 137 A~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555555556679999999999999999988887764
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.12 E-value=0.5 Score=54.41 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
.+..++-+-||||+|||++.|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 46778999999999999999999988764443
No 271
>PF13245 AAA_19: Part of AAA domain
Probab=85.88 E-value=1 Score=42.27 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999888888888874
No 272
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.87 E-value=0.55 Score=57.30 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.4
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999975
No 273
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.87 E-value=0.62 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=23.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
-|.|+|.||||||+.++.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 68899999999999999999999754
No 274
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.78 E-value=1 Score=53.72 Aligned_cols=55 Identities=25% Similarity=0.371 Sum_probs=36.4
Q ss_pred HHhhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 119 QQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 119 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
+.|+-....++..|--++ ...+.....+..-.++++|++|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~~--~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIV--ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHHH--HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 345544444444443322 3344555555555699999999999999999988875
No 275
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.66 E-value=89 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 1015 TEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1015 le~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
...-......+++++-.++..||.|+..++.
T Consensus 235 SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 235 SNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666666666666654
No 276
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.58 E-value=0.6 Score=49.22 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=22.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla 175 (1525)
+|+|.|.+|||||+.+|.+-++|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988874
No 277
>PRK12377 putative replication protein; Provisional
Probab=85.51 E-value=1.3 Score=51.14 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 131 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3566666654444432 35799999999999999999999999853
No 278
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.44 E-value=1.2e+02 Score=38.92 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=5.9
Q ss_pred hhHHHHHHHHH
Q 000426 1035 NLESENQVLRQ 1045 (1525)
Q Consensus 1035 ~Le~E~~~Lrq 1045 (1525)
+++.|+..|++
T Consensus 348 eIK~ELsiLk~ 358 (629)
T KOG0963|consen 348 EIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 279
>PRK06217 hypothetical protein; Validated
Probab=85.43 E-value=0.58 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla 175 (1525)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999988774
No 280
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=1.4e+02 Score=39.45 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 987 EKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 987 le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
......++.+....++...++...++++++..+..+..++..+..+...+++|+..|+..
T Consensus 557 ~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 557 LKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444455555555555555555555555556667777766543
No 281
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.39 E-value=0.66 Score=49.35 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=22.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|.|||.+|||||+-++.+-+++..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 889999999999999999998863
No 282
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.39 E-value=0.96 Score=58.11 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=26.4
Q ss_pred HhcCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 145 VNEGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 145 ~~~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.....++.|+|.||+|+|||..|+++.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456789999999999999999999987653
No 283
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.38 E-value=1e+02 Score=37.96 Aligned_cols=33 Identities=9% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 1009 QKKLDETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 1009 ~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
..++.+.-..+.+...++.++-+...+|..|.+
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444433
No 284
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.37 E-value=1.2e+02 Score=39.12 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=7.0
Q ss_pred eccceeeccc
Q 000426 707 IGKTKIFLRA 716 (1525)
Q Consensus 707 ~G~TkVF~r~ 716 (1525)
=|+|+.|+-.
T Consensus 99 ~GrSr~~INg 108 (557)
T COG0497 99 DGRSRAFING 108 (557)
T ss_pred CCceeEEECC
Confidence 4788888754
No 285
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.30 E-value=1.1e+02 Score=38.05 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000426 1009 QKKLDETEKKVIQLQESLTRLE 1030 (1525)
Q Consensus 1009 ~~~l~ele~~~~~Lq~~l~~LE 1030 (1525)
+++++++..+-..|..++.++|
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 286
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.27 E-value=0.96 Score=55.80 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.3
Q ss_pred HHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 144 MVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 144 m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
....+.+.+++|+|.+|+|||..++.+++.+..
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344567789999999999999999999998854
No 287
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=85.23 E-value=0.77 Score=57.04 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.5
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEEcCCeEEEEe
Q 000426 7 NIIVGSHVWVEDPEEAWIDGQVLKITGKDVEVQT 40 (1525)
Q Consensus 7 ~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~v~~ 40 (1525)
+...|+.|+|.... +.+.|+|+..+++.+.+..
T Consensus 46 ~~~iGe~~~i~~~~-~~~~~eVv~~~~~~~~l~~ 78 (450)
T PRK06002 46 FVRLGDFVAIRADG-GTHLGEVVRVDPDGVTVKP 78 (450)
T ss_pred CCCCCCEEEEECCC-CcEEEEEEEEeCCeEEEEE
Confidence 57889999994333 3488999999998877664
No 288
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.23 E-value=1.1e+02 Score=37.95 Aligned_cols=10 Identities=30% Similarity=0.072 Sum_probs=5.8
Q ss_pred chhHHHHHHH
Q 000426 599 SIGSRFKLQL 608 (1525)
Q Consensus 599 tv~~~f~~~L 608 (1525)
++...|+.|+
T Consensus 79 ~~s~~~i~q~ 88 (622)
T COG5185 79 SVSRLSINQL 88 (622)
T ss_pred hhhHHHHHhh
Confidence 4555566665
No 289
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.22 E-value=0.5 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|++.|.+|||||+-++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999987765
No 290
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.22 E-value=0.52 Score=55.01 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=25.1
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5689999999999999999999988763
No 291
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.20 E-value=92 Score=41.68 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 880 GALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEANASLVK 941 (1525)
Q Consensus 880 ~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~l~~ 941 (1525)
+.+.+.+..|.++++.+-+.+....-.....|.+-.+|++.++.++..|+..+++++.++..
T Consensus 603 e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 603 EEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556665555544432111112222333345555666666666666665554443
No 292
>PRK06936 type III secretion system ATPase; Provisional
Probab=85.16 E-value=1.6 Score=54.29 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 134 FAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 134 favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 33344455556666789999999999999999988877654
No 293
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.14 E-value=0.66 Score=52.06 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla 175 (1525)
-|-|+|-||||||+-||.+..-|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 355799999999999999988886
No 294
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.13 E-value=1.6 Score=57.49 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 132 HVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 132 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+-.|+.--...+...+.+.++.|+|.+|.|||.+++++++-|..
T Consensus 763 EIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 763 EIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355555444333444555566789999999999999999999864
No 295
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.08 E-value=4.4 Score=45.31 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 999 KEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKL 1033 (1525)
Q Consensus 999 ~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki 1033 (1525)
+..+.....+.++.+++..++++|-++.++|++++
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33333334444444555555555555555554443
No 296
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.07 E-value=1.1 Score=57.06 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=39.2
Q ss_pred HHhhCCCCCCCC--chHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 119 QQYKGAPFGELS--PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 119 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
++|+-..+.++. +|+...=..| +...+-.++++++|+.|.|||++++++.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456655555553 4444432222 3345668999999999999999999999998653
No 297
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.05 E-value=30 Score=40.10 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000426 1013 DETEKKVIQLQESLTRLEEKLANL 1036 (1525)
Q Consensus 1013 ~ele~~~~~Lq~~l~~LEeki~~L 1036 (1525)
.+.+.++..|.......+.....|
T Consensus 85 ~e~~~~i~~l~ee~~~ke~Ea~~l 108 (246)
T PF00769_consen 85 REAEAEIARLEEESERKEEEAEEL 108 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 298
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.96 E-value=33 Score=42.05 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 000426 1024 ESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 1024 ~~l~~LEeki~~Le~E~~~ 1042 (1525)
+.+...++++.+|++++..
T Consensus 428 ~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555443
No 299
>PRK11281 hypothetical protein; Provisional
Probab=84.63 E-value=64 Score=45.13 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 000426 1028 RLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 1028 ~LEeki~~Le~E~~~Lrq 1045 (1525)
+|-+.+..+..+++.+.+
T Consensus 289 ~Ls~~L~~~t~~~~~l~~ 306 (1113)
T PRK11281 289 QLSQRLLKATEKLNTLTQ 306 (1113)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 300
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.61 E-value=1.1 Score=49.81 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=27.3
Q ss_pred cCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 147 EGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 147 ~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
..+...|.|+|.||||||+.++.+.+.|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999988654
No 301
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=84.61 E-value=1.1 Score=53.65 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=35.2
Q ss_pred HHHhhCCCCCCCC--chHHHHHHHHHHHHHhcC-CCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 118 MQQYKGAPFGELS--PHVFAVADVAYRAMVNEG-KSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 118 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.++|+-+...++- +|+-+ ........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3466665555553 34422 334444344 45677779999999999999998876
No 302
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.59 E-value=30 Score=35.48 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000426 1007 EKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLR 1044 (1525)
Q Consensus 1007 ~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lr 1044 (1525)
.+..++.+++.+++.+-.-+-.-.+++.+|+.++..+|
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555554444
No 303
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.58 E-value=1.6 Score=49.42 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
..+..++|.|++|+|||..++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999998887543
No 304
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.50 E-value=0.79 Score=48.22 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999999655
No 305
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.47 E-value=47 Score=45.18 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=10.9
Q ss_pred hhhcccCHHHHHHHHHHHHH
Q 000426 307 MDIVGISEKDQEAIFRVVAA 326 (1525)
Q Consensus 307 l~~lg~~~~~~~~i~~ilaa 326 (1525)
|+.+-.++.+|..||.-+++
T Consensus 99 FDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 99 FDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred cceeeCcchhHHHHHHHHHH
Confidence 44444445557777765544
No 306
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.42 E-value=0.76 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999964
No 307
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.38 E-value=0.53 Score=53.49 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=22.0
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
--+++-|+||||||++.|+|-+-+--
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35688899999999999999877753
No 308
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.37 E-value=0.57 Score=59.04 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=26.5
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
...+..-|-||||||||+++..+|.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 456788899999999999999999999754
No 309
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.35 E-value=1.2 Score=56.37 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=40.0
Q ss_pred HHHhhCCCCCCC--CchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 118 MQQYKGAPFGEL--SPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 118 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.++|+-..+.++ .+|+-..=..|+ ...+-+|+++++|.+|.|||++++++-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 356766665555 355544333332 245668999999999999999999999988654
No 310
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.35 E-value=94 Score=36.66 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQ 1002 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~ 1002 (1525)
++.+|.++...++.+..++..++.++-.+..+..
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~h 192 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYH 192 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444444444444444444333
No 311
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=84.29 E-value=1.4 Score=54.78 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 133 VFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 133 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
++...-.|-..|..-++.|.+.|.|.||+|||+..+.+..+
T Consensus 151 ~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 151 PLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44555566667777789999999999999999998887654
No 312
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.25 E-value=11 Score=34.85 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 973 LTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKL 1033 (1525)
Q Consensus 973 L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki 1033 (1525)
|+.++..|+..++.+..++.-.+..+..+..+.+....++..+-.++..|..+++.+++++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666555555554454444444444455555555555555555554443
No 313
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.24 E-value=1.4 Score=56.82 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=41.7
Q ss_pred HHHHhhCCCCCCCCchHHHHHHHHHHHHH-hcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 117 MMQQYKGAPFGELSPHVFAVADVAYRAMV-NEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 117 ~~~~y~~~~~~~~~PHifavA~~Ay~~m~-~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
..++|+-..+.++--|--.+ ..+..+. ..+-.+++|++|+.|.|||+.|+.+-+.|-+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567766666654333333 2334444 44668999999999999999999999999654
No 314
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.24 E-value=72 Score=35.20 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000426 972 SLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVL 1043 (1525)
Q Consensus 972 ~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~L 1043 (1525)
.|..+...+.+.+..+...-+.+..+....+..+..+..++.+.+..-......+..|+..+.+|+..+...
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~ 184 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEA 184 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHH
Confidence 333333333333333333333333333333333333344444444444444444444444444444444433
No 315
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.20 E-value=82 Score=41.07 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=5.3
Q ss_pred ccceeeccc
Q 000426 708 GKTKIFLRA 716 (1525)
Q Consensus 708 G~TkVF~r~ 716 (1525)
|+++.|+-.
T Consensus 105 grs~~~iNg 113 (563)
T TIGR00634 105 GRSRAYLNG 113 (563)
T ss_pred CceEEEECC
Confidence 566666543
No 316
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.19 E-value=19 Score=41.21 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 1012 LDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 1012 l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
+.+++.+..+.++...++.+++..|+++...++.+
T Consensus 69 Ikqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 69 IKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555544
No 317
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.16 E-value=1.1e+02 Score=38.44 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 000426 887 DKLQKTVEDLTWRIQ 901 (1525)
Q Consensus 887 ~~Le~kv~el~~rl~ 901 (1525)
.+++.++.++..++.
T Consensus 174 ~fl~~ql~~~~~~l~ 188 (444)
T TIGR03017 174 LWFVQQIAALREDLA 188 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 318
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.11 E-value=1.2e+02 Score=38.59 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000426 888 KLQKTVEDLTWR 899 (1525)
Q Consensus 888 ~Le~kv~el~~r 899 (1525)
.|-.+|.+.+.|
T Consensus 306 ~L~qqV~qs~EK 317 (518)
T PF10212_consen 306 GLAQQVQQSQEK 317 (518)
T ss_pred HHHHHHHHHHHH
Confidence 333344333333
No 319
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.94 E-value=0.72 Score=48.60 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.8
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 320
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.94 E-value=24 Score=40.29 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 967 TKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEK 1032 (1525)
Q Consensus 967 ~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEek 1032 (1525)
.++.+.|..|......+|....+.+..++..+...+.+..+....+..+..++..|..++++++.+
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666655554444444444444555555555544443
No 321
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.86 E-value=7.5 Score=36.32 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 997 KSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 997 ~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
++..+-+...-++-++++++.+...|.++.+.+......|+.+|+.|+++
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333344444555555555666666665555555666666666654
No 322
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.80 E-value=1.8e+02 Score=39.34 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHc
Q 000426 602 SRFKLQLQQLMDTLN 616 (1525)
Q Consensus 602 ~~f~~~L~~Lm~~l~ 616 (1525)
..+-.++..|.+.|.
T Consensus 152 ~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345667777777773
No 323
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=83.75 E-value=0.83 Score=50.11 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yl 174 (1525)
-|+|.|.||||||+-||.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999985
No 324
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.66 E-value=1.3 Score=55.33 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 131 PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 131 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.|+... ....+.+...+...+|++.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 354443 3556777777888899999999999999999987765
No 325
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=83.65 E-value=0.98 Score=50.33 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=29.7
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccHHHHHhhhch-----HHHhhcC
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTVEQQVLESNP-----VLEAFGN 204 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~ve~~il~snp-----iLEaFGN 204 (1525)
|.|+|.+|||||+.++++-++ |. ..-+...+...+++.++ |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~-~~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GA-FGISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CC-EEEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988866543 21 11122345555665433 6667776
No 326
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.65 E-value=1.5e+02 Score=39.44 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADE---TERKSKEAQETSEEKQKKLDETEKKVIQLQ 1023 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~e---le~~~~e~~~~~e~~~~~l~ele~~~~~Lq 1023 (1525)
....+|++||-.|++++..+++..-+ ++.++..++++.+-+..+++++..-..-.+
T Consensus 97 ~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae 155 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE 155 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777776666654433 333344444444445555555544433333
No 327
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=83.61 E-value=1.8 Score=53.88 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 138 DVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 138 ~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 133 ~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 133 VRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred ceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 3455666677889999999999999999988887654
No 328
>PRK07667 uridine kinase; Provisional
Probab=83.59 E-value=0.94 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=23.2
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
--|-|+|-||||||+.|+.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36679999999999999999999974
No 329
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.55 E-value=95 Score=36.08 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 000426 1016 EKKVIQLQESLTRLEEKLANLESENQVLRQQAVS 1049 (1525)
Q Consensus 1016 e~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq~~~ 1049 (1525)
-.....+++++..-++.+.+|++++..|+.+...
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777777665433
No 330
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.53 E-value=0.94 Score=52.49 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.5
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999888864
No 331
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=83.52 E-value=0.92 Score=49.39 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999998776
No 332
>PRK13764 ATPase; Provisional
Probab=83.51 E-value=0.91 Score=58.52 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=24.1
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999873
No 333
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.50 E-value=1.8e+02 Score=39.24 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000426 917 EVTKLQNSLQEMQAKLDE 934 (1525)
Q Consensus 917 E~~kLq~~l~elq~qlee 934 (1525)
++..|+++++.|+..+.+
T Consensus 393 ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555444433
No 334
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=83.50 E-value=0.94 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.6
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
...|+|.|.||||||+.++.+...+..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999987753
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.44 E-value=0.87 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.6
Q ss_pred cEEEecCCCCCChhHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yl 174 (1525)
-.|+|.|.+|||||+.++.+.+++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 336
>PRK04182 cytidylate kinase; Provisional
Probab=83.39 E-value=0.79 Score=49.59 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yl 174 (1525)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997765
No 337
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.34 E-value=1 Score=57.04 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=25.8
Q ss_pred HHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 141 YRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 141 y~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
++.+.. ...--|+|+|++|||||++...+++++.
T Consensus 234 l~~~~~-~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 234 FERLIR-RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 444443 2334789999999999999998888874
No 338
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.27 E-value=41 Score=43.38 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000426 879 TGALKEAKDKLQKTVEDLT 897 (1525)
Q Consensus 879 ~~~l~~~~~~Le~kv~el~ 897 (1525)
.+.+-++...|++++.+++
T Consensus 134 ae~lpeveael~qr~~al~ 152 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALT 152 (916)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 4455555555555555543
No 339
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.19 E-value=0.91 Score=51.43 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+..+.=|.||||+|||+.++.++-+..-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 56789999999999999999999877654
No 340
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.09 E-value=1.7 Score=56.81 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=29.2
Q ss_pred HHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 142 RAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 142 ~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344455678999999999999999999998876543
No 341
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.03 E-value=2e+02 Score=39.39 Aligned_cols=231 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 000426 816 AARKEFRFRKQTKAAIIIQARWRCHKATAYYKRLKRGSIKAQTRWRGRIARRELRKLKMAARE--TGALKEAKDKLQKTV 893 (1525)
Q Consensus 816 ~aRr~~~~~~~~~AAi~IQ~~~R~~~ar~~y~~~r~a~i~iQ~~~R~~~ARkel~~lk~~ar~--~~~l~~~~~~Le~kv 893 (1525)
.|-+..+..-+..++..-|-.|..+..-..-...-.-+-..++..+....+...+.-...++. .+........+..++
T Consensus 199 eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i 278 (1141)
T KOG0018|consen 199 EAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKI 278 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 894 EDLTWRIQLEKR-----------------------LRTDLEEAKAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKAI 950 (1525)
Q Consensus 894 ~el~~rl~~ek~-----------------------~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l 950 (1525)
.+....+....+ .+..-..++..+++++++++.++...-++.....+......-..+
T Consensus 279 ~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~l 358 (1141)
T KOG0018|consen 279 SEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSEL 358 (1141)
T ss_pred HHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q ss_pred HhCChhhhhH-----HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 951 EEAPPVVKEK-----EVLVEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQES 1025 (1525)
Q Consensus 951 ~e~~~~~~e~-----~~l~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~ 1025 (1525)
...+..+++. +...+...++..++.+...-+..++.+..+..+++++...+....++...+...+...+..+...
T Consensus 359 nl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~ 438 (1141)
T KOG0018|consen 359 NLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRS 438 (1141)
T ss_pred CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 000426 1026 LTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 1026 l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
+..+......|+......+.+
T Consensus 439 ~~e~~~d~~~l~~~~~~~~~~ 459 (1141)
T KOG0018|consen 439 YEELKHDLDSLESLVSSAEEE 459 (1141)
T ss_pred HHHHhhcHHHHHHHHhhhhhh
No 342
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=83.02 E-value=2.1 Score=53.46 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 134 FAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 134 favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
|...-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444555666677889999999999999999988776653
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.01 E-value=1.2 Score=48.34 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=24.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999988654
No 344
>PRK04040 adenylate kinase; Provisional
Probab=82.94 E-value=0.89 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999883
No 345
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.92 E-value=1.1e+02 Score=36.35 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000426 848 RLKRGSIKAQTRWRGRIARRELRKLKMAARETGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSL-Q 926 (1525)
Q Consensus 848 ~~r~a~i~iQ~~~R~~~ARkel~~lk~~ar~~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l-~ 926 (1525)
.++..+..+|...+-... .+......+.++......|...-..++.+.+.++....----.+.+.+++-+..+ .
T Consensus 24 ~l~~~~~sL~qen~~Lk~-----El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~ 98 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKR-----ELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLAL 98 (310)
T ss_pred HHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHH--HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 927 EMQAKLDEANASLVKEREAAKKAIEEAPPVVKEKE--VLVEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQET 1004 (1525)
Q Consensus 927 elq~qlee~~~~l~~e~e~~~~~l~e~~~~~~e~~--~l~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~ 1004 (1525)
.++.+=+-+...|.+-...++..-.++....+.-+ .+......+..|..+...++.+++.+....-+++..++.-+..
T Consensus 99 ~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~ 178 (310)
T PF09755_consen 99 KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEA 178 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHhhHHHHHHHHHHhhh
Q 000426 1005 -SEEKQKKLDETEKKVIQLQESLT-----------------------RLEEKLANLESENQVLRQQAVS 1049 (1525)
Q Consensus 1005 -~e~~~~~l~ele~~~~~Lq~~l~-----------------------~LEeki~~Le~E~~~Lrqq~~~ 1049 (1525)
...+.++++.+..+...|+..+. .+...+..|.+|...|+++...
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
No 346
>PHA00729 NTP-binding motif containing protein
Probab=82.83 E-value=1.7 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.7
Q ss_pred cCCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 147 EGKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 147 ~~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
++.-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33446899999999999999999998775
No 347
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=82.77 E-value=1.2 Score=56.77 Aligned_cols=59 Identities=29% Similarity=0.433 Sum_probs=43.2
Q ss_pred HHHHhhCCCCCCCCchHHHHHH--HHHHHHHhcC-CCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 117 MMQQYKGAPFGELSPHVFAVAD--VAYRAMVNEG-KSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 117 ~~~~y~~~~~~~~~PHifavA~--~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.+++|+-+...++.-|-=.|.+ .....|.... ..+-.|++|.+|+|||++.|.+.+-|.
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677887777888888766654 3445555443 356678899999999999999888773
No 348
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.70 E-value=1.7 Score=53.75 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=40.3
Q ss_pred HHhhCCCCCCCCchHHHHHHHHHHHHHhc-CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 119 QQYKGAPFGELSPHVFAVADVAYRAMVNE-GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 119 ~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
++|+-..+.+.--|-.++. ..+.+... +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~--~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHITR--TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHHH--HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4565555555544443332 45666665 45789999999999999999999998864
No 349
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.70 E-value=2.5 Score=52.43 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 139 VAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 139 ~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.|...+..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344445556789999999999999999988776543
No 350
>PRK05922 type III secretion system ATPase; Validated
Probab=82.68 E-value=1.6 Score=54.20 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 134 FAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 134 favA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+.+.-+|-..+..-++.|-|.|.|.+|+|||+..+.++++.
T Consensus 141 l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 141 FPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 34444455556677899999999999999999988887664
No 351
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=44 Score=42.64 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 968 KKIESLTAEVEGLKTALESEKKRADETE 995 (1525)
Q Consensus 968 ~~~~~L~~e~~~L~~el~~le~~~~ele 995 (1525)
.++.+|+.++++++.+++.++.+++.+.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 352
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=1.5e+02 Score=37.55 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000426 917 EVTKLQNSLQEMQAKLDEANASL 939 (1525)
Q Consensus 917 E~~kLq~~l~elq~qlee~~~~l 939 (1525)
|.+.|+.++..++..+.+..+.+
T Consensus 339 e~kdLkEkv~~lq~~l~eke~sl 361 (654)
T KOG4809|consen 339 ENKDLKEKVNALQAELTEKESSL 361 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444443333
No 353
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=82.63 E-value=74 Score=44.45 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=4.8
Q ss_pred HHHHhhHHHHHHH
Q 000426 1031 EKLANLESENQVL 1043 (1525)
Q Consensus 1031 eki~~Le~E~~~L 1043 (1525)
+++.....+++.+
T Consensus 272 ~~L~~~t~~~n~l 284 (1109)
T PRK10929 272 QALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 354
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=82.33 E-value=2.3 Score=52.86 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCCHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHhcC-----------CCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 112 IYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEG-----------KSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 112 ~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+.++..+..|-....-..++=+=+++..+|..+.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5567777777654433334444455555554433221 24789999999999999999987655
No 355
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=82.31 E-value=1 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.4
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...|+|+|.+|||||+.++.++.++.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 46899999999999999999998775
No 356
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.31 E-value=92 Score=35.00 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSK 999 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~ 999 (1525)
++..|.-+.+.|+..+..++...+++..+..
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 357
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.28 E-value=1.7e+02 Score=38.19 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 917 EVTKLQNSLQEMQAKLDEANASLVKEREAAKKAI 950 (1525)
Q Consensus 917 E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l 950 (1525)
++...+..+++++.+++.+...+.+|..+.+...
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ve 309 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVE 309 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777777776666554443
No 358
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.24 E-value=0.97 Score=46.95 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888877
No 359
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.21 E-value=56 Score=40.18 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 000426 1022 LQESLTRLEEKLA 1034 (1525)
Q Consensus 1022 Lq~~l~~LEeki~ 1034 (1525)
.+++++.|++.+.
T Consensus 433 ~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 433 KDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 360
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.11 E-value=0.83 Score=54.87 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
++.|++=|-||||||||+....+++-+..-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999999888644
No 361
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=82.10 E-value=0.96 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.9
Q ss_pred CcEEEecCCCCCChhHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMR 172 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~ 172 (1525)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877765
No 362
>PRK06761 hypothetical protein; Provisional
Probab=81.98 E-value=0.94 Score=53.17 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=23.8
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 363
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.79 E-value=1.5 Score=39.42 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.3
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yl 174 (1525)
..+|+|++|||||+..-.+.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999776654433
No 364
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=81.77 E-value=1.2e+02 Score=38.37 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 920 KLQNSLQEMQAKLDEANASLVKEREAAKK 948 (1525)
Q Consensus 920 kLq~~l~elq~qlee~~~~l~~e~e~~~~ 948 (1525)
....++...+.+++.+-..+..|.++.+.
T Consensus 278 ~aeeel~~I~e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 278 EAEEELGLIQEKIESLYDLLEREVEAKNV 306 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666665566555554433
No 365
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.75 E-value=1.9 Score=55.25 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=39.3
Q ss_pred HHHhhCCCCCCCC--chHHHHHHHHHHHHHh-cCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 118 MQQYKGAPFGELS--PHVFAVADVAYRAMVN-EGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 118 ~~~y~~~~~~~~~--PHifavA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++|+-..+.++- +|+... ...+.. .+-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567666665554 555543 333333 355788999999999999999999999864
No 366
>PRK15453 phosphoribulokinase; Provisional
Probab=81.71 E-value=1.2 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=21.4
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.=-|.|+|-||||||+.++.+.+-|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999988776554
No 367
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=81.69 E-value=4.2 Score=35.39 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=41.9
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEEcC-CeEEEEecC-CcEEEEecCccccCC
Q 000426 7 NIIVGSHVWVEDPEEAWIDGQVLKITG-KDVEVQTTK-GKKVVANLSKIYPKD 57 (1525)
Q Consensus 7 ~~~~g~~vwv~~~~~~w~~~~v~~~~~-~~~~v~~~~-g~~~~~~~~~~~~~~ 57 (1525)
++.+|+.|=++..+..|-.|+|+++++ +.+.|...| |....++.+++.+..
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899988887677899999999987 778888776 988888887776654
No 368
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=81.68 E-value=2 Score=46.55 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 135 AVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 135 avA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
+|...+...| ...+.-.|-++|-||||||+.|..+-+.|-..|-
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4444443333 3455679999999999999999999999988764
No 369
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.64 E-value=1.1 Score=50.72 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 370
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.63 E-value=0.75 Score=59.20 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.6
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
.+.+.|.|.|+||||||+.+|.++++..--+|
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 57899999999999999999999988764333
No 371
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=81.61 E-value=1.3 Score=47.45 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998653
No 372
>PRK14527 adenylate kinase; Provisional
Probab=81.61 E-value=1.2 Score=49.24 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+..-|+|.|.+|||||+.++.+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5678999999999999999999877743
No 373
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=81.59 E-value=1.2 Score=48.94 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999999853
No 374
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=81.50 E-value=1.1 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.6
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
--=+.+.|.||||||+..|+|+.-.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3457899999999999999987544
No 375
>PRK00106 hypothetical protein; Provisional
Probab=81.49 E-value=68 Score=41.28 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=5.9
Q ss_pred CCCccCCHH-HHHHHH
Q 000426 1449 YGTHSVSSD-VISNMR 1463 (1525)
Q Consensus 1449 ~e~~~Vs~~-~i~~~~ 1463 (1525)
++..+.|++ +|+.|.
T Consensus 446 pgar~~s~~~~i~rl~ 461 (535)
T PRK00106 446 PGARNESMENYIKRLR 461 (535)
T ss_pred CCCCcCCHHHHHHHHH
Confidence 333333333 444443
No 376
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=81.46 E-value=1.1 Score=50.16 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887554
No 377
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=81.45 E-value=1.1 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.+.+.+.|-|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 568899999999999999999987665
No 378
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.45 E-value=1.1 Score=50.28 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999888886544
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=81.45 E-value=2.4 Score=51.13 Aligned_cols=31 Identities=42% Similarity=0.540 Sum_probs=27.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3468999999999999999999999987654
No 380
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=81.39 E-value=0.99 Score=53.27 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred CcEEEecCCCCCChhHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKML 170 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~ 170 (1525)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 381
>PRK08356 hypothetical protein; Provisional
Probab=81.28 E-value=0.99 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred cEEEecCCCCCChhHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMR 172 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~ 172 (1525)
--|+|+|.+|||||+.++++-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999954
No 382
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.20 E-value=1.2 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
...+.+.|.|+||||||+..|.++..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988887643
No 383
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=81.11 E-value=1.2 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999987765
No 384
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=81.07 E-value=2.3 Score=52.73 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 138 DVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 138 ~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
-.|...|..-++.|.+.|.|.||+|||+..+.++++.
T Consensus 125 i~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 125 VRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred EEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445556666789999999999999999887777644
No 385
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=81.07 E-value=5.2 Score=50.88 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
..-.|++.|++|+|||..+|.+...|.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 356799999999999999999988875
No 386
>PRK12704 phosphodiesterase; Provisional
Probab=81.04 E-value=73 Score=41.04 Aligned_cols=10 Identities=10% Similarity=0.016 Sum_probs=4.0
Q ss_pred hhHHHHHHHH
Q 000426 1402 KHIRQAIGFL 1411 (1525)
Q Consensus 1402 ~~l~Qa~~lL 1411 (1525)
-.|++++..|
T Consensus 417 a~IV~~ADaL 426 (520)
T PRK12704 417 AVLVAAADAI 426 (520)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 387
>PRK08727 hypothetical protein; Validated
Probab=81.01 E-value=1.9 Score=49.43 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=26.1
Q ss_pred cCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 147 EGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 147 ~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
....+.|+|+|+||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999988887654
No 388
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.95 E-value=0.95 Score=54.07 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.0
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46999999999999999999887763
No 389
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=80.95 E-value=1.2 Score=50.14 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...+.+.|.|+||||||+..|.++..+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4578999999999999999998876553
No 390
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.92 E-value=1.4 Score=51.86 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhc--------CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 133 VFAVADVAYRAMVNE--------GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 133 ifavA~~Ay~~m~~~--------~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
++....++...++.. .+...|++.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555555555531 245689999999999999999999999864
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=80.92 E-value=1.1 Score=50.71 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998776
No 392
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.91 E-value=1.6 Score=44.43 Aligned_cols=26 Identities=46% Similarity=0.765 Sum_probs=23.9
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998643
No 393
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=80.88 E-value=1.3 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988887554
No 394
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=80.74 E-value=1.4 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999977666544
No 395
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.74 E-value=1.4 Score=55.72 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 133 VFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 133 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
||++-++- |.--+.||.|||.||.|||||+ .+-+||-.-|
T Consensus 357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTT---Ql~QyL~edG 396 (1042)
T KOG0924|consen 357 VFACRDQL---LSVIRENQVVVIVGETGSGKTT---QLAQYLYEDG 396 (1042)
T ss_pred hHHHHHHH---HHHHhhCcEEEEEecCCCCchh---hhHHHHHhcc
Confidence 56655543 3345789999999999999998 4778887655
No 396
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.73 E-value=1.6 Score=53.39 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=32.4
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHhhcCCCccCCccH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAFLGGRTATEGRTV 188 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~~~~~~~~~~~~v 188 (1525)
..|+|-+-|+|||||++.++++.||+-.-+|+-.-++..|
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI 602 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI 602 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence 4699999999999999999999999987666543444444
No 397
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.70 E-value=1.3 Score=49.75 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886544
No 398
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=80.60 E-value=1.1 Score=46.17 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...+.+.|.|++|||||+..+.+...+.
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3568999999999999998777654443
No 399
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.59 E-value=2.1 Score=52.03 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcC-CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 137 ADVAYRAMVNEG-KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 137 A~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
|...+..+...+ -+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 445555555544 5899999999999999999999999865
No 400
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=80.59 E-value=1.2 Score=45.72 Aligned_cols=28 Identities=43% Similarity=0.567 Sum_probs=24.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.....|+++|+=|||||+-+|.+.+.|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5668999999999999999999988873
No 401
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=80.56 E-value=1.2 Score=53.71 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.+.+.+.|.||||||||+.+|.|+..+.
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5678999999999999999999976553
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.54 E-value=1.6 Score=52.34 Aligned_cols=31 Identities=39% Similarity=0.397 Sum_probs=27.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999998554
No 403
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.50 E-value=1.4 Score=47.98 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
+++|+|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999998888777777543
No 404
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.46 E-value=18 Score=40.03 Aligned_cols=78 Identities=28% Similarity=0.500 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEE----KLANLESENQVLR 1044 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEe----ki~~Le~E~~~Lr 1044 (1525)
.++.|+++++.++.++..++.+++.......+. .+...+..++++++.++..|+.++..+.. .+..++.+...++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344444444444444444444444332221111 22344566777777888888887776553 5667777777766
Q ss_pred HHh
Q 000426 1045 QQA 1047 (1525)
Q Consensus 1045 qq~ 1047 (1525)
..+
T Consensus 149 ~~a 151 (188)
T PF03962_consen 149 EAA 151 (188)
T ss_pred HHH
Confidence 643
No 405
>PRK00698 tmk thymidylate kinase; Validated
Probab=80.44 E-value=1.4 Score=48.77 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.6
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3479999999999999999999998644
No 406
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=80.40 E-value=1.3 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 457899999999999999998887654
No 407
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.40 E-value=2.3 Score=53.71 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=37.2
Q ss_pred HHhhCCCCCCC--CchHHHHHHHHHHHHHhcC-CCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 119 QQYKGAPFGEL--SPHVFAVADVAYRAMVNEG-KSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 119 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
++|+-+.+.+. ++|+ ....+.+...+ -.+++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45665555544 4565 33444555444 457899999999999999999988774
No 408
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=80.37 E-value=2.9 Score=49.02 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHh---------cCCCcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 132 HVFAVADVAYRAMVN---------EGKSNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 132 HifavA~~Ay~~m~~---------~~~~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
.+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 456666666666542 23467999999999999999988888887554
No 409
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=80.37 E-value=2.1 Score=50.65 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999988
No 410
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=80.37 E-value=1.2 Score=53.80 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.7
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.+.+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999987665
No 411
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.36 E-value=2 Score=55.54 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=40.3
Q ss_pred HHHhhCCCCCCC--CchHHHHHHHHHHHHHhcC-CCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 118 MQQYKGAPFGEL--SPHVFAVADVAYRAMVNEG-KSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 118 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~-~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++|+-+.+.++ .+|+-++ ++.+...+ -.+++|++|+.|.|||++++.+.++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456776665554 4666433 34444454 4899999999999999999999999964
No 412
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.35 E-value=1.3 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.7
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999988887543
No 413
>PRK06893 DNA replication initiation factor; Validated
Probab=80.34 E-value=2.7 Score=48.00 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 137 ADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 137 A~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
+..+.+.+ ....+-++++.|+||+|||..+..+-+.++.-
T Consensus 27 ~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33333444 34566789999999999999999999887654
No 414
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.34 E-value=97 Score=39.90 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHHHhHHhHHHHHHHHHHHHHHHH
Q 000426 903 EKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKAIEEAPPVVKEKEVLVEDTKKIESLTAEVEGLKT 982 (1525)
Q Consensus 903 ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l~e~~~~~~e~~~l~~~~~~~~~L~~e~~~L~~ 982 (1525)
.+..+..+++++.....-.+....+.+....+.....+++....+..++ ..+.+...++...+..+..-+.
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele---------~el~~~e~rL~qrE~rL~qRee 90 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELE---------RELKERRNELQRLERRLLQREE 90 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000426 983 ALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESE 1039 (1525)
Q Consensus 983 el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E 1039 (1525)
.++.-+..++..++++...++.+++..+++++.+.+...+..+....-++++.|..+
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
No 415
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=80.22 E-value=1.4 Score=51.20 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=26.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
+..-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 4557899999999999999999999987654
No 416
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.22 E-value=2.3e+02 Score=38.24 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHhhH
Q 000426 965 EDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLD--ETEKKVIQ-----LQESLTRLEEKLANLE 1037 (1525)
Q Consensus 965 ~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~--ele~~~~~-----Lq~~l~~LEeki~~Le 1037 (1525)
+....+.+|..+....+.++..+..+++.++++...++-++.-+.++++ ..+.++.. ..++.-.-=++|..||
T Consensus 117 ~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLE 196 (769)
T PF05911_consen 117 EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLE 196 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666665555444333322221 11111111 1111111123677778
Q ss_pred HHHHHHHHHh
Q 000426 1038 SENQVLRQQA 1047 (1525)
Q Consensus 1038 ~E~~~Lrqq~ 1047 (1525)
.|=+.||.-.
T Consensus 197 aEC~rLr~l~ 206 (769)
T PF05911_consen 197 AECQRLRALV 206 (769)
T ss_pred HHHHHHHHHH
Confidence 8877777543
No 417
>PRK14528 adenylate kinase; Provisional
Probab=80.19 E-value=1.4 Score=48.49 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.6
Q ss_pred cEEEecCCCCCChhHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yl 174 (1525)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998776
No 418
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.19 E-value=1.2 Score=51.83 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=19.6
Q ss_pred CcEEEecCCCCCChhHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~y 173 (1525)
-.-|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999997655544
No 419
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.16 E-value=2.2 Score=54.82 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=39.0
Q ss_pred HHHhhCCCCCCC--CchHHHHHHHHHHHHHh-cCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 118 MQQYKGAPFGEL--SPHVFAVADVAYRAMVN-EGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 118 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++|+-+.+.++ .+|+-.. ...+.. .+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456665555554 3555543 333333 456788999999999999999999999854
No 420
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.09 E-value=1.4 Score=48.04 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886543
No 421
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.07 E-value=1.4 Score=50.56 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886544
No 422
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.06 E-value=1.9 Score=55.02 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=37.2
Q ss_pred HHhhCCCCCCC--CchHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 119 QQYKGAPFGEL--SPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 119 ~~y~~~~~~~~--~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
++|+-..+.++ ..|+.+.=..+. ...+-.++++++|++|+|||+.++.+.+.|-.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35555444444 345544333332 23456788999999999999999999998864
No 423
>PRK04195 replication factor C large subunit; Provisional
Probab=79.98 E-value=1.9 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.4
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
....++|+|++|.|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999998776
No 424
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.91 E-value=0.56 Score=63.44 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 881 ALKEAKDKLQKTVEDLTWRIQLEKRLRT 908 (1525)
Q Consensus 881 ~l~~~~~~Le~kv~el~~rl~~ek~~r~ 908 (1525)
.+......|+.+|.+|...++.++..|.
T Consensus 36 ~l~k~~kelq~~i~el~eeLe~Er~~R~ 63 (859)
T PF01576_consen 36 QLQKKIKELQARIEELEEELESERQARA 63 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566666555555554443
No 425
>PRK13768 GTPase; Provisional
Probab=79.87 E-value=1.5 Score=50.81 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=24.5
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998654
No 426
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.83 E-value=1.1e+02 Score=36.38 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000426 971 ESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLES 1038 (1525)
Q Consensus 971 ~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~ 1038 (1525)
..|..|...|.-+++-++.+++++++.+..++.+..+..+.++-+....+.|+.++..|++.+...++
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666666665555555555555555565555555555543333
No 427
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.81 E-value=1 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
...+.+.|.|+||||||+..|.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999888876553
No 428
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.74 E-value=1.6 Score=56.58 Aligned_cols=58 Identities=22% Similarity=0.397 Sum_probs=39.1
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHH-hcCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 118 MQQYKGAPFGELSPHVFAVADVAYRAMV-NEGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 118 ~~~y~~~~~~~~~PHifavA~~Ay~~m~-~~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.++|+-..+.++--|=..+ +...++. ..+-.+++|++|.+|.|||++++++.+.|-+.
T Consensus 15 a~KyRP~~f~dliGq~~~v--~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMV--RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3566655555543332222 2233333 34568999999999999999999999998643
No 429
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=79.72 E-value=1.5 Score=48.04 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.6
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
..-|||+|.||+|||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999988764
No 430
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.71 E-value=1.3 Score=55.88 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.+-.+.=|.||||||||+.+|.++..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45678889999999999999999887753
No 431
>PRK01156 chromosome segregation protein; Provisional
Probab=79.66 E-value=2.6e+02 Score=38.63 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHH
Q 000426 1318 QGIVKSLGNFLNTLKANHVPPFL 1340 (1525)
Q Consensus 1318 ~~il~~L~~~~~~l~~~~v~~~l 1340 (1525)
...+..|+.+...|...++|..+
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I 754 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMI 754 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHH
Confidence 34456666777777777776533
No 432
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=79.64 E-value=1.3 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.1
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMR 172 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~ 172 (1525)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999998855
No 433
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=79.60 E-value=1.4 Score=53.22 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.+.+.+-|-||||||||+.+|.++..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 5678999999999999999999987653
No 434
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=79.52 E-value=1.5 Score=51.78 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=25.3
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
.|++.|++|+|||..|+.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987654
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=79.41 E-value=1.9 Score=40.94 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=23.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHHhh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~~ 177 (1525)
|+++|-.|+|||+.+..+.+.|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999874
No 436
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=79.41 E-value=1.5 Score=49.23 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.7
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888886544
No 437
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=79.38 E-value=1.4 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
|+|.|.+|||||+.++.+.+.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988774
No 438
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=79.38 E-value=1.4 Score=49.50 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999988876443
No 439
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=79.36 E-value=1.8 Score=46.52 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=24.7
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHHhhc
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLAFLG 178 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla~~~ 178 (1525)
..|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999997654
No 440
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.32 E-value=1.9e+02 Score=36.91 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhHHHHHhhhHHHHHH
Q 000426 795 RTAYKRLHVSTLVLQTGLRTMAARK 819 (1525)
Q Consensus 795 Rr~y~~~r~a~i~IQs~~Rg~~aRr 819 (1525)
|+.|..++.-+...|++.-++..++
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 4444455555555566655555443
No 441
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.32 E-value=1.7e+02 Score=40.11 Aligned_cols=9 Identities=56% Similarity=0.626 Sum_probs=5.0
Q ss_pred ccceeeccc
Q 000426 708 GKTKIFLRA 716 (1525)
Q Consensus 708 G~TkVF~r~ 716 (1525)
|+||.-+-+
T Consensus 357 GkTKT~iIA 365 (1041)
T KOG0243|consen 357 GKTKTCIIA 365 (1041)
T ss_pred CCceeEEEE
Confidence 566655543
No 442
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.30 E-value=1.4 Score=50.45 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=23.3
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
=.|+|-|-||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 36899999999999999999998864
No 443
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.24 E-value=72 Score=38.81 Aligned_cols=130 Identities=23% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 915 AQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKAIEEAPPVVKEKEVLVEDTKKIESLTAEVEGLKTALESEKKRADET 994 (1525)
Q Consensus 915 ~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l~e~~~~~~e~~~l~~~~~~~~~L~~e~~~L~~el~~le~~~~el 994 (1525)
.+.+.+|.+.++.|+. ++..+....+.+.++.++...+.-++..++....+...|.+-++.++.+... +.++.+
T Consensus 241 kehv~km~kdle~Lq~----aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~l 314 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQR----AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQL 314 (575)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 000426 995 ERKSKEAQETSEE---------KQKKLDE-TEKKVIQLQESLTRLEEKLANLESENQVLRQQAVSI 1050 (1525)
Q Consensus 995 e~~~~e~~~~~e~---------~~~~l~e-le~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq~~~~ 1050 (1525)
..++++.+.+++. +++=+.- -|.+.+-++.+-++.|.++..-+++-++++....++
T Consensus 315 R~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 315 RVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcch
No 444
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.24 E-value=2.3 Score=56.40 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 139 VAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 139 ~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+...++..++++.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777778888899999999999999999998775
No 445
>PRK05439 pantothenate kinase; Provisional
Probab=79.20 E-value=4.1 Score=48.57 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred cCCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 147 EGKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 147 ~~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.+..--|.|+|-||||||+.|+.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556678999999999999999998877644
No 446
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=79.17 E-value=1.4 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.7
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
..-.|.|+|.||+||++..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34689999999999999877764433
No 447
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.09 E-value=2e+02 Score=36.84 Aligned_cols=7 Identities=0% Similarity=0.624 Sum_probs=2.7
Q ss_pred cceeecc
Q 000426 709 KTKIFLR 715 (1525)
Q Consensus 709 ~TkVF~r 715 (1525)
.+.|.++
T Consensus 42 ~a~lli~ 48 (498)
T TIGR03007 42 SARVYVD 48 (498)
T ss_pred eEEEEEc
Confidence 3333433
No 448
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.08 E-value=2.6 Score=46.35 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHhc-CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 141 YRAMVNE-GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 141 y~~m~~~-~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
++++... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444 45799999999999999999999998864
No 449
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.08 E-value=1.5 Score=50.98 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=50.1
Q ss_pred hcCccccccCCeeEEecCCCCCCCCCCHHHHHHhhCC-----CC--CCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCC
Q 000426 88 ELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGA-----PF--GELSPHVFAVADVAYRAMVNEGKSNSILVSGESG 160 (1525)
Q Consensus 88 ~~~~iYT~~G~iLiavNP~~~lp~~y~~~~~~~y~~~-----~~--~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESG 160 (1525)
+-|.=|++.|..=+-||-|+...+ |+- .++-- .+ -.+||=+..+++ ..+=-|+|+|..|
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~-~a~----vlR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTG 135 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGG-YAL----VLRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTG 135 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCC-cEE----EEeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCC
Confidence 456678988888888888876431 110 01100 01 135665555443 3566899999999
Q ss_pred CChhHHHHHHHHHHHh
Q 000426 161 AGKTETTKMLMRYLAF 176 (1525)
Q Consensus 161 aGKTes~k~~~~yla~ 176 (1525)
||||+|.-.++.|+-.
T Consensus 136 SGKSTTlAamId~iN~ 151 (353)
T COG2805 136 SGKSTTLAAMIDYINK 151 (353)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999963
No 450
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=79.00 E-value=3.5 Score=43.58 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=26.6
Q ss_pred cCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 147 EGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 147 ~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
-..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 356678999999999999999999999974
No 451
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=78.94 E-value=3 Score=47.37 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCC--CcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 137 ADVAYRAMVNEGK--SNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 137 A~~Ay~~m~~~~~--~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
|-.|-..+..... ...++|.|+||+|||.....+..++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3344445554432 3579999999999999988888887643
No 452
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.93 E-value=2.7 Score=54.85 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=38.7
Q ss_pred HHhhCCCCCCCC--chHHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 119 QQYKGAPFGELS--PHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 119 ~~y~~~~~~~~~--PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
++|+-..+.++- .|+...-..++ ...+..+++|++|++|.|||+.++.+.++|-.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 466666665554 44443323332 23456789999999999999999999999964
No 453
>PRK10646 ADP-binding protein; Provisional
Probab=78.81 E-value=3.3 Score=44.22 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.3
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
.-.|++.|+-|||||+-+|.+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44789999999999999999999884
No 454
>PRK08116 hypothetical protein; Validated
Probab=78.79 E-value=3.4 Score=48.38 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHhc-CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 131 PHVFAVADVAYRAMVNE-GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 131 PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.+.|+.|..--...... ..+..+++.|++|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34556555444443322 345679999999999999999999999764
No 455
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.73 E-value=1.1 Score=59.11 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.6
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
...|.|-|.|+||||||+.+|+++.+..--.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 45789999999999999999999988875444
No 456
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=78.72 E-value=1.5 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887766
No 457
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.72 E-value=0.64 Score=61.92 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 000426 404 TIYSRLFDWL 413 (1525)
Q Consensus 404 ~lY~~LF~wi 413 (1525)
.|++-|+.||
T Consensus 7 ~l~~~Lv~Wv 16 (713)
T PF05622_consen 7 ELCDSLVTWV 16 (713)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3455555564
No 458
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.59 E-value=2.1 Score=47.22 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=23.2
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 152 SILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
-||++|-.|||||+-+|.+.+-|-.-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 38999999999999999999988753
No 459
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=78.58 E-value=1.6 Score=49.84 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999888886443
No 460
>PLN02796 D-glycerate 3-kinase
Probab=78.51 E-value=1.5 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yla 175 (1525)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 388999999999999998887775
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=78.50 E-value=1.7 Score=46.89 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988887654
No 462
>PRK06921 hypothetical protein; Provisional
Probab=78.48 E-value=2.3 Score=49.69 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
....+++.|++|+|||..+..|.+.+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 56899999999999999999998887643
No 463
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.43 E-value=1.6 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999887655
No 464
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=78.43 E-value=74 Score=34.90 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 1015 TEKKVIQLQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 1015 le~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
..++....++++..||.+.++|-.||..||+-
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKEl 137 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRENLELKEL 137 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44566666777777777777777777777763
No 465
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=78.42 E-value=1.3 Score=57.73 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=26.6
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.+.|.+.|.|+||||||+..|.++..+.--
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 568999999999999999999999987643
No 466
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=78.38 E-value=1.7 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887644
No 467
>PRK14531 adenylate kinase; Provisional
Probab=78.37 E-value=1.8 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.7
Q ss_pred cEEEecCCCCCChhHHHHHHHHHHH
Q 000426 151 NSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 151 QsIiisGESGaGKTes~k~~~~yla 175 (1525)
|-|+|.|.+|||||+.++.+-+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988874
No 468
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.36 E-value=2.9 Score=53.37 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=41.0
Q ss_pred HHHhhCCCCCCC--CchHHHHHHHHHHHHH-hcCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 118 MQQYKGAPFGEL--SPHVFAVADVAYRAMV-NEGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 118 ~~~y~~~~~~~~--~PHifavA~~Ay~~m~-~~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++|+-+.+.++ .+||-. +.+.+. ..+-+++++++|..|.|||++++.+.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467777666665 355544 344444 4567889999999999999999999999954
No 469
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=78.28 E-value=2.2 Score=48.85 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=32.1
Q ss_pred HHHHHHHHHHh-cCCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 136 VADVAYRAMVN-EGKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 136 vA~~Ay~~m~~-~~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
+.+++|..|.. -..+.+-.++|++|+||||++|.+-+.|..
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 46778877653 356789999999999999999888776653
No 470
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=78.27 E-value=1.7 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.+...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988886544
No 471
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=78.25 E-value=49 Score=33.35 Aligned_cols=35 Identities=31% Similarity=0.351 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000426 1008 KQKKLDETEKKVIQLQESLTRLEEKLANLESENQV 1042 (1525)
Q Consensus 1008 ~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~ 1042 (1525)
+..+++.++..+..+.++...+++++.+++..+..
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666555543
No 472
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.09 E-value=32 Score=34.12 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000426 969 KIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQ 1041 (1525)
Q Consensus 969 ~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~ 1041 (1525)
+...|...+.-|+.-+-+.+.+..++.+.+...+..+.+ ++++++.|.-....|..++..|..|+.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk-------~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRK-------LEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554444433 444444444444555555555555555
No 473
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=78.08 E-value=2.7 Score=50.22 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCCch----HHHHHHHHHHHHHhcCCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 128 ELSPH----VFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 128 ~~~PH----ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.++|- +..+.+.-+..-..-.....|++.|-+|||||+.++.+-+.|
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45664 333443333333345678899999999999999999987765
No 474
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=78.07 E-value=1.6 Score=49.13 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988877543
No 475
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.05 E-value=1.6 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
.. +.+.|.|+||||||+..+.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999988886544
No 476
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=78.04 E-value=1.7 Score=48.49 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999988886543
No 477
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=78.02 E-value=1.7 Score=48.85 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
...+.+.|.|+||||||+..|.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998888543
No 478
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.98 E-value=3.6 Score=50.36 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=43.1
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHHhc-CCCcEEEecCCCCCChhHHHHHHHHHHHh
Q 000426 118 MQQYKGAPFGELSPHVFAVADVAYRAMVNE-GKSNSILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 118 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~~~~yla~ 176 (1525)
.++|+-..+.++--|-.++ ...+..... .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678777777776665544 345555544 45789999999999999999999888864
No 479
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=77.97 E-value=1.7 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHh
Q 000426 153 ILVSGESGAGKTETTKMLMRYLAF 176 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla~ 176 (1525)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999863
No 480
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.94 E-value=3.2 Score=52.29 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=41.0
Q ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHHhc-CCCcEEEecCCCCCChhHHHHHHHHHHHhh
Q 000426 118 MQQYKGAPFGELSPHVFAVADVAYRAMVNE-GKSNSILVSGESGAGKTETTKMLMRYLAFL 177 (1525)
Q Consensus 118 ~~~y~~~~~~~~~PHifavA~~Ay~~m~~~-~~~QsIiisGESGaGKTes~k~~~~yla~~ 177 (1525)
.++|+-..+.++--|--.++ ..+.+... .-.+++|++|++|.|||+.++.+.++|-.-
T Consensus 8 ~~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 34566666666554544443 34444444 457999999999999999999999999643
No 481
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=77.79 E-value=1.6 Score=47.97 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000426 152 SILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 152 sIiisGESGaGKTes~k~~~~yl 174 (1525)
-|||+|.||||||+.++.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998885
No 482
>PRK10436 hypothetical protein; Provisional
Probab=77.72 E-value=1.6 Score=54.97 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 149 KSNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 149 ~~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
..=-|+|+|..|||||++...+++++.
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 345799999999999999998888875
No 483
>PRK00023 cmk cytidylate kinase; Provisional
Probab=77.72 E-value=1.8 Score=49.40 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.3
Q ss_pred CcEEEecCCCCCChhHHHHHHHHHHH
Q 000426 150 SNSILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 150 ~QsIiisGESGaGKTes~k~~~~yla 175 (1525)
+-.|.|+|.+|||||+.++.+.+.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998884
No 484
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.68 E-value=1.8 Score=48.84 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=21.6
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMR 172 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~ 172 (1525)
...+.+.|.|+||||||+..|.+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568899999999999999888864
No 485
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=77.65 E-value=1.8 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887654
No 486
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.64 E-value=1.8 Score=48.41 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
.+.+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 487
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.61 E-value=1.3e+02 Score=38.82 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Q 000426 878 ETGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEA--------------NASLVKER 943 (1525)
Q Consensus 878 ~~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~--------------~~~l~~e~ 943 (1525)
+...+......+..++.+++..-...-................|+.++..++..+... ......+.
T Consensus 117 ~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~ 196 (511)
T PF09787_consen 117 RLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIER 196 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhCChhhhhHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q 000426 944 EAAKKAIEEAPPVVKEKEVLVEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKK-----------L 1012 (1525)
Q Consensus 944 e~~~~~l~e~~~~~~e~~~l~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~-----------l 1012 (1525)
..+..................+-...++.+..+.+..+.++.+.+.+....-..-+.+...+...... +
T Consensus 197 ~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el 276 (511)
T PF09787_consen 197 QELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIEL 276 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000426 1013 DETEKKVIQLQESLTRLEEKLANLESENQVLRQQA 1047 (1525)
Q Consensus 1013 ~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrqq~ 1047 (1525)
+++..+.+.+++++..++..+..++.|.+.+..+.
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=77.60 E-value=1.8 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yl 174 (1525)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999988876444
No 489
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=77.56 E-value=1.1 Score=46.71 Aligned_cols=26 Identities=38% Similarity=0.731 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRY 173 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~y 173 (1525)
..+..|+|.||+|+||+..++++-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
No 490
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.56 E-value=1.5e+02 Score=34.61 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh
Q 000426 878 ETGALKEAKDKLQKTVEDLTWRIQLEKRLRTDLEEAKAQEVTKLQNSLQEMQAKLDEANASLVKEREAAKKAIEEAPPVV 957 (1525)
Q Consensus 878 ~~~~l~~~~~~Le~kv~el~~rl~~ek~~r~~le~ak~~E~~kLq~~l~elq~qlee~~~~l~~e~e~~~~~l~e~~~~~ 957 (1525)
....+......++++|+.|..+++ .-..++..+++++++.+.++..++.++....+.....-+-..+..
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~-----------~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIE-----------EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHH----------------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000426 958 KEKEV----------------LVEDTKKIESLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQ 1021 (1525)
Q Consensus 958 ~e~~~----------------l~~~~~~~~~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~ 1021 (1525)
.-... +-+--..+..+..-++.=+.-++..+.....++.+-...++..+.+..-..+++.....
T Consensus 108 RAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~ 187 (265)
T COG3883 108 RAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNS 187 (265)
T ss_pred HHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 000426 1022 LQESLTRLEEKLANLESENQVLRQQ 1046 (1525)
Q Consensus 1022 Lq~~l~~LEeki~~Le~E~~~Lrqq 1046 (1525)
|..+...++..+..+..+...+..+
T Consensus 188 L~~qk~e~~~l~~~~aa~~a~~~~e 212 (265)
T COG3883 188 LNSQKAEKNALIAALAAKEASALGE 212 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
No 491
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=77.51 E-value=5.3 Score=33.47 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=0.0
Q ss_pred CcEEEEeCCC-CCeEeEEEEEEc-CCeEEEEecC-CcEEEEecCcccc
Q 000426 11 GSHVWVEDPE-EAWIDGQVLKIT-GKDVEVQTTK-GKKVVANLSKIYP 55 (1525)
Q Consensus 11 g~~vwv~~~~-~~w~~~~v~~~~-~~~~~v~~~~-g~~~~~~~~~~~~ 55 (1525)
|+.|-++.++ ..|-+|+|+++. ++.++|...| |....++.+++.|
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHcCC
No 492
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=77.49 E-value=1.8 Score=48.30 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~ 171 (1525)
...+.+.|.|+||||||+..|.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 493
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.48 E-value=1.9 Score=48.34 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~ 171 (1525)
...+.+.|.|+||||||+..|.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 494
>PRK10908 cell division protein FtsE; Provisional
Probab=77.39 E-value=1.9 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~ 171 (1525)
...+.+.|.|+||||||+..|.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 495
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.36 E-value=1.9 Score=46.83 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~ 171 (1525)
...+.+.|.|+||||||+..|.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 496
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=77.35 E-value=1.3 Score=50.42 Aligned_cols=32 Identities=38% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHHHHHHhhcC
Q 000426 148 GKSNSILVSGESGAGKTETTKMLMRYLAFLGG 179 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~~yla~~~~ 179 (1525)
...+.+.|.|+||||||+..|.++..+...+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
No 497
>PRK03839 putative kinase; Provisional
Probab=77.34 E-value=1.8 Score=47.14 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=0.0
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYL 174 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yl 174 (1525)
|+|.|-+|||||+.++.+-+-+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 498
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.32 E-value=38 Score=33.57 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000426 972 SLTAEVEGLKTALESEKKRADETERKSKEAQETSEEKQKKLDETEKKVIQLQESLTRLEEKLANLESENQVLRQ 1045 (1525)
Q Consensus 972 ~L~~e~~~L~~el~~le~~~~ele~~~~e~~~~~e~~~~~l~ele~~~~~Lq~~l~~LEeki~~Le~E~~~Lrq 1045 (1525)
.|-.|..+|+.+...+++..-+-+.+...+...+......+..++++++.|.-....|..++..|..|+....+
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 499
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=77.32 E-value=1.7 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCCChhHHHHHHH
Q 000426 148 GKSNSILVSGESGAGKTETTKMLM 171 (1525)
Q Consensus 148 ~~~QsIiisGESGaGKTes~k~~~ 171 (1525)
...+.+.|.|+||||||+..|.++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHc
No 500
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=77.32 E-value=1.9 Score=48.18 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=0.0
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000426 153 ILVSGESGAGKTETTKMLMRYLA 175 (1525)
Q Consensus 153 IiisGESGaGKTes~k~~~~yla 175 (1525)
++|.|.||||||...+.++.-|+
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHHH
Done!