BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000427
(1521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
Query: 1173 LEHLSIDGCPSLKCIFSKNELPATLESLEVGNLPPSLKSLDVYRC--SKLESIAERLDNN 1230
L LSI CP L ELP L S + L +L R + + S+ + N
Sbjct: 152 LRELSIRACPEL------TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 1231 TSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECE 1290
+L++++I N + P+ +H+L +L ++ ++ C L + L+ + + +C
Sbjct: 206 QNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 1291 NLKILPSGLHNLHQLREISVERCGNLVSFP 1320
NL LP +H L QL ++ + C NL P
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 1193 LPATLESLEVGNLPPSLKSLDVYRCSKLESIAERL-DNNTSLETIRISNCESPKI----- 1246
LPA++ SL L+ L + C +L + E L + S E + N +S ++
Sbjct: 142 LPASIASLN------RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
Query: 1247 --LPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQ 1304
LP+ + NL+ L+ + I+ L ++ + + LE++ + C L+ P
Sbjct: 196 RSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 1305 LREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTS 1352
L+ + ++ C NL++ P ++ KL +R C L LP + L +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 87/237 (36%), Gaps = 48/237 (20%)
Query: 1247 LPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLR 1306
P L L+ +I G L + + LE + ++ L+ LP+ + +L++LR
Sbjct: 96 FPDQAFRLSHLQHXTIDAAG-LXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLR 153
Query: 1307 EISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHN-LTSVQELRIGGELPSL 1365
E+S+ C L PE P A G H L ++Q LR L
Sbjct: 154 ELSIRACPELTELPE---PLASTDA-------------SGEHQGLVNLQSLR-------L 190
Query: 1366 EEDG---LPTKIQSLHIRGNMEIWKSMVER-GRGFHRFSSMRHLEIGGC-----YDDMVS 1416
E G LP I +L +++I S + G H + L++ GC Y +
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 1417 FPLEDKRLGXXXXXXXXXXXXXXXXFSNLERLPSSIVDLQNLTELRLHGCPKLKYFP 1473
KRL SNL LP I L L +L L GC L P
Sbjct: 251 GRAPLKRL-------------ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 1079 LVSFPEVALPSKLKEIQIGHCDA--LKSLPEAWMCDTHSSLEILNIQYCCSLTYIAAVQL 1136
L FP+ A +L +Q DA L LP+ + LE L + A++
Sbjct: 93 LPQFPDQAF--RLSHLQHXTIDAAGLXELPDT--XQQFAGLETLTLARNPLRALPASIAS 148
Query: 1137 PSSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSK-NELPA 1195
+ L++L I C + L E + + +S EH + SL+ ++ LPA
Sbjct: 149 LNRLRELSIRACPELTELP--EPLASTDASG------EHQGLVNLQSLRLEWTGIRSLPA 200
Query: 1196 TLESLEVGNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLR 1255
++ +L+ +LKSL + R S L ++ + + LE + + C + + P
Sbjct: 201 SIANLQ------NLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 1256 QLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPS 1297
L+++ ++ C NL ++ + T LE + + C NL LPS
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 82/228 (35%), Gaps = 63/228 (27%)
Query: 1044 LEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKEIQIGHCDALK 1103
LE L L R L LP S SL+ LRE+ I C L PE + DA
Sbjct: 129 LETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPE----------PLASTDA-- 175
Query: 1104 SLPEAWMCDTHSSLEILNIQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLTVDEGIQCS 1163
H L +N+Q L + LP+S+ L+ N+++L + +
Sbjct: 176 -------SGEHQGL--VNLQ-SLRLEWTGIRSLPASIANLQ-----NLKSLKIR-----N 215
Query: 1164 SSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESLEVGNLPPSLKSLDVYRCSKLESI 1223
S + HL P L+ LD+ C+ L +
Sbjct: 216 SPLSALGPAIHHL------------------------------PKLEELDLRGCTALRNY 245
Query: 1224 AERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESI 1271
L+ + + +C + LP +H L QL K+ ++ C NL +
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1445 LERLPSSIVDLQNLTELRLHGCPKLKYFPE 1474
L LP+SI L L EL + CP+L PE
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPE 168
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 134/332 (40%), Gaps = 66/332 (19%)
Query: 217 IPIVGMGGLGKTTLAQLVYNDKQVLD--HFNLKAWTCV--SDDFDVIRLTKTILTSIVAD 272
+ I GM G GK+ LA D +L+ W V D ++ + + T + D
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 273 QNVDN---LNLNSLQEKLNKQLSGK--KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKI 327
++ LN+ +++L + K + LL+LDDVW D W + + F+ +I
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW--VLKAFD---SQCQI 260
Query: 328 IVTTRNQEVA-KIMG---TVPA-YQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKK 382
++TTR++ V +MG VP L K + L++FV L E
Sbjct: 261 LLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN--------MKKADLPEQAHS 312
Query: 383 IVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVL--------------SSKIWELPEERCGI 428
I+ +C G PL +G LLR +R WE L SS +E +E
Sbjct: 313 IIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQNKQFKRIRKSSSYDYEALDE---- 366
Query: 429 IPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGR 488
A+++S L +K + S+ KD + + + +LW +D
Sbjct: 367 --AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW--------DMETEEVED--- 413
Query: 489 KIFKELHSRSFFQQSSNDAS-RFVMHDLISDL 519
I +E ++S N S R+ +HDL D
Sbjct: 414 -ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 53/280 (18%)
Query: 217 IPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKA--WTCVS--DDFDVIRLTKTILTSIVAD 272
+ I GM G GK+ LA D +L+ W V D ++ + + T + D
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 273 QNVDN---LNLNSLQEKLNKQLSGK--KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKI 327
++ LN+ +++L + K + LL+LDDVW D W + + F+ +I
Sbjct: 216 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW--VLKAFD---SQCQI 266
Query: 328 IVTTRNQEVA-KIMG---TVPA-YQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKK 382
++TTR++ V +MG VP L K + L++FV L E
Sbjct: 267 LLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN--------MKKADLPEQAHS 318
Query: 383 IVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVL--------------SSKIWELPEERCGI 428
I+ +C G PL +G LLR +R WE L SS +E +E
Sbjct: 319 IIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQNKQFKRIRKSSSYDYEALDE---- 372
Query: 429 IPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 468
A+++S L +K + S+ KD + + + +LW
Sbjct: 373 --AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 410
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 139/349 (39%), Gaps = 70/349 (20%)
Query: 158 KDSLGLNVSSGGRTTKDRQRRETTSLVKEAKVYGREI---EKKDVVELLLRDDLSNDGGF 214
+ L L SS G+ T +++ E V R + +K +V + + +G
Sbjct: 88 QSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEP 147
Query: 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVAD-Q 273
+ I GM G GK+ LA D +L+ C S + + K + ++ Q
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLE-------GCFSGGVHWVSIGKQDKSGLLMKLQ 200
Query: 274 NV----DN---------LNLNSLQEKLNKQLSGK--KFLLVLDDVWNRNYDDWDQLRRPF 318
N+ D LN+ +++L + K + LL+LDDVW D W + + F
Sbjct: 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW----DPW--VLKAF 254
Query: 319 EVGAPGSKIIVTTRNQEVA-KIMG---TVPAYQ-LKKLSDNDCLAVFVQHSLGTRDFSSH 373
+ +I++TTR++ V +MG VP L + + L++FV
Sbjct: 255 D---NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--------MKK 303
Query: 374 KSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVL--------------SSKIW 419
+ L I+ +C G PL +G LLR +R W L SS +
Sbjct: 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYLRQLQNKQFKRIRKSSSYDY 361
Query: 420 ELPEERCGIIPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 468
E +E A+++S L +K + S+ KD + + + +LW
Sbjct: 362 EALDE------AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 138/349 (39%), Gaps = 70/349 (20%)
Query: 158 KDSLGLNVSSGGRTTKDRQRRETTSLVKEAKVYGREI---EKKDVVELLLRDDLSNDGGF 214
+ L L SS G+ T +++ E V R + +K +V + + +G
Sbjct: 95 QSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEP 154
Query: 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVAD-Q 273
+ I GM G GK+ LA D +L+ C S + + K + ++ Q
Sbjct: 155 GWVTIYGMAGCGKSVLAAEAVRDHSLLE-------GCFSGGVHWVSIGKQDKSGLLMKLQ 207
Query: 274 NV----DN---------LNLNSLQEKLNKQLSGK--KFLLVLDDVWNRNYDDWDQLRRPF 318
N+ D LN+ +++L + K + LL+LDDVW D W + + F
Sbjct: 208 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW----DPW--VLKAF 261
Query: 319 EVGAPGSKIIVTTRNQEVA-KIMG---TVPAYQ-LKKLSDNDCLAVFVQHSLGTRDFSSH 373
+ +I++TT ++ V +MG VP L + + L++FV
Sbjct: 262 D---NQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--------MKK 310
Query: 374 KSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVL--------------SSKIW 419
+ L I+ +C G PL +G LLR +R W L SS +
Sbjct: 311 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--WAYYLRQLQNKQFKRIRKSSSYDY 368
Query: 420 ELPEERCGIIPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 468
E +E A+++S L +K + S+ KD + + + +LW
Sbjct: 369 EALDE------AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 204 LRDDLSNDGGFSVIPIVGMG--------GLGKTTLAQLVYNDKQVL-----DHFNLKAWT 250
+R D+ DG FS+ P V +G GLG TL +L Y+ + VL + + + T
Sbjct: 1179 IRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLYTRGPHQYKIASVT 1238
Query: 251 CVSDDFDVIRLTKT 264
+ ++F V LT T
Sbjct: 1239 DIPEEFHVSLLTPT 1252
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 591 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNL 648
+I +FK L L G + ELP I +L LR L+LS R+ +LP + + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 599 LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESV-NTLYNLHTXXXXXXX 657
L +R +L G ++++ ++ +L L YL L+G ++ +LP V + L NL
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 658 XXXXXXADMGNLIKLHYLNNSYTGSLEEMPLG-FGKLTCLQTL 699
L L YLN ++ L+ +P G F KLT L L
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTEL 162
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 591 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESV-NTLYNLH 649
S+L +L +LQ +++ G P + L YLR LN+SG ++ TL ESV +++ NL
Sbjct: 266 SMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323
Query: 650 T 650
T
Sbjct: 324 T 324
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From
Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich Effector
Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 1047 LELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKEIQIGHCD--ALKS 1104
LELN GL LP+ L SL + +C+SL PE LP LK + + + + AL
Sbjct: 76 LELNNL-GLSSLPELPPHLESL----VASCNSLTELPE--LPQSLKSLLVDNNNLKALSD 128
Query: 1105 LPE--AWMCDTHSSLE------------ILNI---------QYCCSLTYIAA-----VQL 1136
LP ++ +++ LE I+++ SL +IAA +L
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 188
Query: 1137 P--SSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLS-IDGCPSLKCIFSKNEL 1193
P +L L DN + + S ++ILE L + P L I++ N L
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248
Query: 1194 PATLESLEVGNLPPSLKSLDV 1214
TL +LPPSL++L+V
Sbjct: 249 LKTL-----PDLPPSLEALNV 264
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And
Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1043 RLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALP-SKLKEIQIGHCDA 1101
RLEY+ EGLV L + + +L++I N ++LV E+ L ++L I+ G
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 1102 LKSLPEAWM 1110
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of
Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of
Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1043 RLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALP-SKLKEIQIGHCDA 1101
RLEY+ EGLV L + + +L++I N ++LV E+ L ++L I+ G
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 1102 LKSLPEAWM 1110
L SL + W+
Sbjct: 201 LTSLRKLWL 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,629,037
Number of Sequences: 62578
Number of extensions: 1811587
Number of successful extensions: 4888
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4841
Number of HSP's gapped (non-prelim): 74
length of query: 1521
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1410
effective length of database: 8,027,179
effective search space: 11318322390
effective search space used: 11318322390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)