Query 000427
Match_columns 1521
No_of_seqs 953 out of 6013
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6E-85 1.3E-89 816.3 50.6 642 24-707 16-678 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-61 2.9E-66 647.1 59.8 435 186-687 183-651 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-41 3E-46 390.9 13.7 278 192-476 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.6E-40 3.5E-45 448.6 26.3 268 1042-1382 284-557 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.8E-39 6E-44 436.6 25.5 501 591-1345 84-589 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.4E-29 5.3E-34 278.4 2.5 358 1041-1486 77-446 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 9.8E-31 2.1E-35 277.1 -12.4 125 1212-1340 417-541 (565)
8 KOG0618 Serine/threonine phosp 99.9 2E-29 4.4E-34 295.3 -8.9 265 1041-1359 240-508 (1081)
9 KOG4194 Membrane glycoprotein 99.9 5.2E-26 1.1E-30 252.2 4.5 127 1207-1334 317-446 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 9.5E-29 2.1E-33 262.2 -16.4 106 592-699 60-165 (565)
11 KOG0618 Serine/threonine phosp 99.9 2.2E-25 4.8E-30 261.7 -7.4 261 1207-1491 219-488 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 4.1E-25 8.9E-30 245.8 -6.7 360 1042-1492 7-375 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.9E-29 241.9 -6.5 372 599-1273 6-380 (1255)
14 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.5E-25 252.4 23.3 31 1443-1473 880-910 (1153)
15 KOG4237 Extracellular matrix p 99.6 5.6E-17 1.2E-21 173.5 -3.3 58 1204-1265 441-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 9.9E-15 2.1E-19 180.5 13.7 125 1206-1347 341-465 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 4.1E-14 8.8E-19 175.1 16.2 92 1042-1148 201-292 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 2E-13 4.3E-18 170.7 10.7 136 1207-1360 241-376 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 1.8E-13 3.9E-18 171.1 10.0 121 1207-1340 304-428 (754)
20 KOG0617 Ras suppressor protein 99.4 7.9E-15 1.7E-19 138.4 -4.7 85 596-681 29-113 (264)
21 KOG4237 Extracellular matrix p 99.3 4.8E-14 1E-18 151.4 -3.3 136 1203-1339 63-200 (498)
22 PRK04841 transcriptional regul 99.3 6.6E-11 1.4E-15 160.1 26.1 293 187-524 14-332 (903)
23 KOG0617 Ras suppressor protein 99.3 5.7E-14 1.2E-18 132.7 -3.4 149 1228-1382 30-183 (264)
24 cd00116 LRR_RI Leucine-rich re 99.3 2.9E-13 6.3E-18 159.1 -1.3 134 1207-1340 137-291 (319)
25 cd00116 LRR_RI Leucine-rich re 99.3 4.1E-13 8.8E-18 157.8 -0.2 133 1208-1340 109-263 (319)
26 PRK00411 cdc6 cell division co 99.3 6.7E-10 1.4E-14 133.9 25.8 300 186-502 29-357 (394)
27 KOG4658 Apoptotic ATPase [Sign 99.2 8.6E-12 1.9E-16 158.6 8.3 105 598-703 543-651 (889)
28 TIGR02928 orc1/cdc6 family rep 99.2 4.9E-09 1.1E-13 125.0 27.3 301 187-503 15-350 (365)
29 TIGR03015 pepcterm_ATPase puta 99.1 7E-09 1.5E-13 118.0 20.8 182 214-401 43-242 (269)
30 PF01637 Arch_ATPase: Archaeal 99.0 2.7E-09 5.9E-14 119.0 12.5 196 189-396 1-233 (234)
31 TIGR00635 ruvB Holliday juncti 99.0 1.5E-08 3.3E-13 117.2 19.2 276 187-503 4-289 (305)
32 PRK00080 ruvB Holliday junctio 99.0 1.1E-08 2.3E-13 119.0 17.6 278 187-504 25-311 (328)
33 PTZ00112 origin recognition co 98.9 1.3E-07 2.9E-12 114.1 23.1 301 186-502 754-1085(1164)
34 KOG1259 Nischarin, modulator o 98.9 6.8E-10 1.5E-14 115.0 3.3 131 1207-1343 284-415 (490)
35 COG2909 MalT ATP-dependent tra 98.9 1.1E-07 2.3E-12 114.4 21.7 291 197-526 25-340 (894)
36 KOG3207 Beta-tubulin folding c 98.9 4.2E-10 9.2E-15 123.5 0.8 136 1207-1342 197-341 (505)
37 PF05729 NACHT: NACHT domain 98.8 1.6E-08 3.4E-13 105.8 10.7 144 215-364 1-163 (166)
38 PF14580 LRR_9: Leucine-rich r 98.8 1.9E-09 4.1E-14 109.4 2.6 106 1207-1316 19-126 (175)
39 PF14580 LRR_9: Leucine-rich r 98.7 2.4E-09 5.2E-14 108.7 0.9 130 1226-1359 14-148 (175)
40 COG3899 Predicted ATPase [Gene 98.7 1.9E-07 4.2E-12 120.1 18.5 310 189-521 2-383 (849)
41 KOG3207 Beta-tubulin folding c 98.7 1.5E-09 3.3E-14 119.2 -0.6 133 1207-1339 146-283 (505)
42 KOG0532 Leucine-rich repeat (L 98.6 1.8E-09 3.8E-14 122.3 -3.3 106 591-699 89-194 (722)
43 PRK06893 DNA replication initi 98.6 4.6E-07 1E-11 98.9 15.0 155 215-401 40-207 (229)
44 PLN03150 hypothetical protein; 98.6 3.7E-08 8E-13 123.9 6.7 111 1208-1318 419-530 (623)
45 PLN03150 hypothetical protein; 98.6 4.3E-08 9.2E-13 123.4 5.9 110 1232-1341 419-529 (623)
46 COG4886 Leucine-rich repeat (L 98.6 3.4E-08 7.3E-13 119.4 4.6 102 596-699 112-214 (394)
47 PRK13342 recombination factor 98.5 1.6E-06 3.5E-11 103.9 16.5 178 188-400 13-199 (413)
48 KOG1909 Ran GTPase-activating 98.5 8.3E-09 1.8E-13 110.7 -4.3 134 1206-1339 156-310 (382)
49 KOG4341 F-box protein containi 98.5 2.1E-08 4.5E-13 109.9 -1.6 238 1004-1291 185-438 (483)
50 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.1E-06 4.5E-11 94.7 13.9 171 192-400 22-204 (226)
51 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.4E-12 78.2 3.7 57 1257-1313 3-59 (61)
52 KOG4341 F-box protein containi 98.4 5.1E-09 1.1E-13 114.6 -6.8 284 809-1131 139-442 (483)
53 COG2256 MGS1 ATPase related to 98.4 1.2E-06 2.7E-11 96.6 11.2 176 184-395 27-210 (436)
54 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.6E-12 77.5 4.1 59 1232-1290 2-60 (61)
55 KOG0532 Leucine-rich repeat (L 98.4 1.5E-08 3.3E-13 114.9 -3.6 100 598-700 73-172 (722)
56 PRK05564 DNA polymerase III su 98.4 7.9E-06 1.7E-10 94.3 17.4 179 188-397 5-190 (313)
57 PRK14961 DNA polymerase III su 98.4 9.9E-06 2.1E-10 95.2 18.4 193 187-396 16-219 (363)
58 KOG1259 Nischarin, modulator o 98.4 6.7E-08 1.5E-12 100.5 0.0 81 1255-1339 284-364 (490)
59 PF13401 AAA_22: AAA domain; P 98.4 7.6E-07 1.7E-11 88.5 7.3 117 214-333 4-125 (131)
60 PRK14960 DNA polymerase III su 98.4 8.3E-06 1.8E-10 98.1 17.0 194 187-397 15-219 (702)
61 PRK14949 DNA polymerase III su 98.4 9.9E-06 2.2E-10 100.5 18.0 183 187-397 16-220 (944)
62 PRK12402 replication factor C 98.3 7.8E-06 1.7E-10 96.6 15.7 200 187-397 15-226 (337)
63 PRK07003 DNA polymerase III su 98.3 3.6E-05 7.7E-10 93.7 20.8 195 187-398 16-222 (830)
64 PRK14963 DNA polymerase III su 98.3 3E-06 6.5E-11 102.4 11.6 199 187-395 14-215 (504)
65 PF13191 AAA_16: AAA ATPase do 98.3 1.8E-06 3.9E-11 92.0 8.8 49 188-239 1-49 (185)
66 PRK04195 replication factor C 98.3 5.2E-05 1.1E-09 93.0 22.5 247 187-476 14-271 (482)
67 COG4886 Leucine-rich repeat (L 98.3 5.7E-07 1.2E-11 108.7 5.3 171 1207-1383 116-288 (394)
68 PF13173 AAA_14: AAA domain 98.3 1.9E-06 4.1E-11 84.6 7.7 119 215-356 3-127 (128)
69 COG3903 Predicted ATPase [Gene 98.3 1.5E-06 3.2E-11 97.0 7.3 288 214-522 14-312 (414)
70 KOG0531 Protein phosphatase 1, 98.3 1.5E-07 3.2E-12 113.5 -0.8 236 1207-1469 72-318 (414)
71 cd00009 AAA The AAA+ (ATPases 98.3 4.8E-06 1.1E-10 85.1 10.6 125 190-335 1-131 (151)
72 PRK15386 type III secretion pr 98.3 3.2E-06 7E-11 96.4 9.9 39 1114-1155 51-89 (426)
73 COG1474 CDC6 Cdc6-related prot 98.3 4.4E-05 9.6E-10 88.3 19.3 203 189-396 19-237 (366)
74 KOG1859 Leucine-rich repeat pr 98.2 1.6E-08 3.4E-13 117.6 -8.9 127 1208-1340 165-292 (1096)
75 PF05496 RuvB_N: Holliday junc 98.2 2.4E-05 5.2E-10 81.1 14.6 183 187-403 24-227 (233)
76 TIGR02903 spore_lon_C ATP-depe 98.2 2.4E-05 5.2E-10 97.7 17.1 202 188-400 155-398 (615)
77 PRK06645 DNA polymerase III su 98.2 3.5E-05 7.6E-10 92.7 17.8 193 187-395 21-227 (507)
78 PRK12323 DNA polymerase III su 98.2 2.9E-05 6.4E-10 93.2 16.6 199 187-397 16-225 (700)
79 PRK14956 DNA polymerase III su 98.2 9.8E-06 2.1E-10 95.0 12.1 197 187-395 18-220 (484)
80 PRK14957 DNA polymerase III su 98.2 3.6E-05 7.8E-10 93.1 17.3 185 187-399 16-223 (546)
81 cd01128 rho_factor Transcripti 98.2 2.7E-06 6E-11 92.6 7.0 89 214-303 16-112 (249)
82 PRK14962 DNA polymerase III su 98.2 6.6E-05 1.4E-09 90.1 19.0 187 187-401 14-223 (472)
83 PTZ00202 tuzin; Provisional 98.2 2E-05 4.4E-10 88.8 13.5 168 184-363 259-433 (550)
84 KOG2028 ATPase related to the 98.2 2.5E-05 5.4E-10 84.2 13.5 158 213-393 161-332 (554)
85 KOG1909 Ran GTPase-activating 98.2 2.9E-07 6.3E-12 99.1 -0.9 135 1207-1341 92-255 (382)
86 PLN03025 replication factor C 98.2 4.2E-05 9.2E-10 88.5 16.8 183 187-395 13-198 (319)
87 PRK08727 hypothetical protein; 98.2 3.8E-05 8.3E-10 84.1 15.5 148 215-394 42-201 (233)
88 PRK08691 DNA polymerase III su 98.1 3.5E-05 7.6E-10 93.9 15.8 194 187-397 16-220 (709)
89 PRK00440 rfc replication facto 98.1 4.7E-05 1E-09 89.2 16.7 182 187-396 17-202 (319)
90 PRK05896 DNA polymerase III su 98.1 3.2E-05 7E-10 93.3 14.8 197 187-399 16-223 (605)
91 TIGR02397 dnaX_nterm DNA polym 98.1 8.7E-05 1.9E-09 88.3 18.6 183 187-398 14-219 (355)
92 PRK07994 DNA polymerase III su 98.1 4.5E-05 9.8E-10 93.7 16.1 196 187-398 16-221 (647)
93 KOG0531 Protein phosphatase 1, 98.1 6E-07 1.3E-11 108.3 -0.0 168 1207-1382 118-287 (414)
94 PRK14951 DNA polymerase III su 98.1 7E-05 1.5E-09 91.9 17.5 195 187-397 16-225 (618)
95 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.8E-12 98.8 -5.3 180 1042-1265 185-373 (419)
96 PRK14964 DNA polymerase III su 98.1 7.8E-05 1.7E-09 88.8 17.2 182 187-395 13-215 (491)
97 PRK14958 DNA polymerase III su 98.1 6.8E-05 1.5E-09 91.1 16.8 183 187-396 16-219 (509)
98 PRK13341 recombination factor 98.1 3.9E-05 8.4E-10 96.5 14.8 171 187-394 28-214 (725)
99 PRK07940 DNA polymerase III su 98.1 8.1E-05 1.8E-09 87.1 16.5 193 188-397 6-213 (394)
100 PRK09376 rho transcription ter 98.1 8.6E-06 1.9E-10 91.8 8.0 87 215-303 170-265 (416)
101 PRK07471 DNA polymerase III su 98.0 0.0001 2.2E-09 85.5 16.9 196 186-398 18-239 (365)
102 PRK08084 DNA replication initi 98.0 9.2E-05 2E-09 81.2 15.4 156 214-401 45-213 (235)
103 TIGR00678 holB DNA polymerase 98.0 9.6E-05 2.1E-09 78.5 15.0 91 293-393 95-187 (188)
104 PRK15386 type III secretion pr 98.0 2.1E-05 4.6E-10 89.9 10.4 166 1275-1494 48-215 (426)
105 PRK05642 DNA replication initi 98.0 7.9E-05 1.7E-09 81.6 14.4 156 214-401 45-212 (234)
106 PRK14969 DNA polymerase III su 98.0 0.00015 3.2E-09 88.9 17.9 180 187-397 16-221 (527)
107 PRK14955 DNA polymerase III su 98.0 0.0001 2.2E-09 87.8 15.7 200 187-396 16-227 (397)
108 PRK09112 DNA polymerase III su 98.0 0.00018 3.9E-09 83.1 17.1 198 186-398 22-241 (351)
109 KOG2227 Pre-initiation complex 98.0 0.00024 5.2E-09 80.3 17.1 213 185-400 148-375 (529)
110 PF00308 Bac_DnaA: Bacterial d 98.0 9.3E-05 2E-09 79.9 13.5 188 186-399 8-210 (219)
111 PF12799 LRR_4: Leucine Rich r 98.0 6.6E-06 1.4E-10 62.1 3.2 39 601-639 2-40 (44)
112 PRK08903 DnaA regulatory inact 98.0 0.0001 2.2E-09 81.1 14.1 153 214-402 42-204 (227)
113 PRK09087 hypothetical protein; 98.0 7.1E-05 1.5E-09 81.1 12.6 143 214-398 44-196 (226)
114 PRK09111 DNA polymerase III su 97.9 0.00019 4.2E-09 88.4 17.0 199 187-398 24-234 (598)
115 PRK14959 DNA polymerase III su 97.9 0.00024 5.2E-09 86.5 17.3 199 187-401 16-225 (624)
116 TIGR01242 26Sp45 26S proteasom 97.9 6.3E-05 1.4E-09 88.9 11.8 180 186-391 121-328 (364)
117 PRK07133 DNA polymerase III su 97.9 0.00035 7.5E-09 86.5 18.1 194 187-397 18-219 (725)
118 PRK14952 DNA polymerase III su 97.9 0.00035 7.6E-09 85.7 18.1 199 187-401 13-224 (584)
119 KOG2120 SCF ubiquitin ligase, 97.9 1.3E-06 2.7E-11 91.6 -2.5 176 1207-1382 185-373 (419)
120 PRK14087 dnaA chromosomal repl 97.9 0.00029 6.2E-09 84.7 16.5 170 214-400 141-322 (450)
121 PRK11331 5-methylcytosine-spec 97.8 7.2E-05 1.6E-09 86.7 10.2 108 187-307 175-285 (459)
122 PRK07764 DNA polymerase III su 97.8 0.00033 7.3E-09 89.4 17.2 190 187-395 15-219 (824)
123 PRK14970 DNA polymerase III su 97.8 0.0005 1.1E-08 81.8 17.5 182 187-395 17-207 (367)
124 PRK08451 DNA polymerase III su 97.8 0.00064 1.4E-08 82.0 18.2 180 187-397 14-218 (535)
125 PRK14953 DNA polymerase III su 97.8 0.00079 1.7E-08 81.5 19.1 184 187-398 16-221 (486)
126 PRK14950 DNA polymerase III su 97.8 0.00027 6E-09 88.4 15.6 197 187-398 16-222 (585)
127 KOG1859 Leucine-rich repeat pr 97.8 1.3E-06 2.8E-11 102.1 -4.7 122 1255-1383 164-290 (1096)
128 PF05621 TniB: Bacterial TniB 97.8 0.00068 1.5E-08 74.2 16.2 205 188-397 35-261 (302)
129 PHA02544 44 clamp loader, smal 97.8 0.00032 7E-09 81.7 14.9 148 187-362 21-171 (316)
130 TIGR00767 rho transcription te 97.8 9.7E-05 2.1E-09 84.1 9.6 88 215-303 169-264 (415)
131 KOG0989 Replication factor C, 97.8 0.00023 5E-09 76.0 11.7 185 187-393 36-226 (346)
132 PRK14971 DNA polymerase III su 97.7 0.00069 1.5E-08 84.4 18.0 178 187-396 17-221 (614)
133 PF12799 LRR_4: Leucine Rich r 97.7 2.1E-05 4.6E-10 59.4 2.9 39 623-662 1-39 (44)
134 CHL00181 cbbX CbbX; Provisiona 97.7 0.00087 1.9E-08 75.5 16.9 134 215-365 60-210 (287)
135 PRK14954 DNA polymerase III su 97.7 0.00036 7.8E-09 86.2 14.9 199 187-394 16-225 (620)
136 PRK14948 DNA polymerase III su 97.7 0.00081 1.8E-08 83.7 18.1 198 187-398 16-223 (620)
137 PRK06305 DNA polymerase III su 97.7 0.00063 1.4E-08 81.8 16.7 182 187-397 17-223 (451)
138 TIGR02881 spore_V_K stage V sp 97.7 0.00051 1.1E-08 77.0 14.1 161 188-365 7-192 (261)
139 TIGR00362 DnaA chromosomal rep 97.7 0.00092 2E-08 80.5 16.8 160 214-396 136-309 (405)
140 PF14516 AAA_35: AAA-like doma 97.6 0.007 1.5E-07 70.2 22.9 201 187-404 11-246 (331)
141 PRK06620 hypothetical protein; 97.6 0.00087 1.9E-08 72.0 14.2 135 215-397 45-189 (214)
142 PRK03992 proteasome-activating 97.6 0.00025 5.5E-09 84.0 10.6 158 187-365 131-316 (389)
143 TIGR02880 cbbX_cfxQ probable R 97.6 0.0013 2.8E-08 74.3 15.7 132 216-364 60-208 (284)
144 TIGR02639 ClpA ATP-dependent C 97.6 0.00049 1.1E-08 88.9 13.8 156 187-364 182-358 (731)
145 KOG2982 Uncharacterized conser 97.6 2.7E-05 5.8E-10 81.9 1.8 171 1206-1383 70-260 (418)
146 PRK14965 DNA polymerase III su 97.6 0.0012 2.6E-08 82.1 16.7 195 187-397 16-221 (576)
147 PF05673 DUF815: Protein of un 97.6 0.0016 3.5E-08 68.9 14.8 125 184-336 24-153 (249)
148 PRK06647 DNA polymerase III su 97.6 0.0023 5.1E-08 78.8 18.6 195 187-397 16-220 (563)
149 PRK12422 chromosomal replicati 97.6 0.00087 1.9E-08 80.3 14.6 156 213-391 140-307 (445)
150 KOG2982 Uncharacterized conser 97.5 4.5E-05 9.7E-10 80.3 2.7 82 1278-1359 198-287 (418)
151 PRK14088 dnaA chromosomal repl 97.5 0.0015 3.2E-08 78.6 15.9 161 214-396 130-304 (440)
152 KOG2543 Origin recognition com 97.5 0.0022 4.9E-08 70.8 15.4 167 186-362 5-191 (438)
153 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00064 1.4E-08 88.2 13.5 157 187-364 187-363 (852)
154 KOG4579 Leucine-rich repeat (L 97.5 6.4E-06 1.4E-10 76.3 -3.5 96 602-699 29-128 (177)
155 PRK00149 dnaA chromosomal repl 97.5 0.0016 3.4E-08 79.5 15.6 161 213-396 147-321 (450)
156 PRK05563 DNA polymerase III su 97.5 0.0037 7.9E-08 77.5 18.8 193 187-395 16-218 (559)
157 COG2255 RuvB Holliday junction 97.5 0.0028 6.1E-08 67.3 14.6 197 187-402 26-228 (332)
158 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.5E-10 74.7 -2.5 134 1208-1344 28-163 (177)
159 PRK05707 DNA polymerase III su 97.4 0.0022 4.7E-08 73.6 15.1 97 293-397 105-203 (328)
160 PRK14086 dnaA chromosomal repl 97.4 0.0046 9.9E-08 75.3 18.3 159 214-395 314-486 (617)
161 PRK07399 DNA polymerase III su 97.4 0.003 6.5E-08 72.0 15.7 197 188-398 5-222 (314)
162 CHL00095 clpC Clp protease ATP 97.4 0.0012 2.5E-08 86.5 13.6 155 187-362 179-352 (821)
163 TIGR00763 lon ATP-dependent pr 97.4 0.0023 5.1E-08 83.1 16.2 52 186-237 319-370 (775)
164 COG0593 DnaA ATPase involved i 97.3 0.0021 4.6E-08 74.0 12.8 191 186-397 87-290 (408)
165 PF00004 AAA: ATPase family as 97.3 0.00055 1.2E-08 68.0 7.0 68 217-305 1-69 (132)
166 KOG1644 U2-associated snRNP A' 97.3 0.00032 6.9E-09 70.3 5.0 82 1232-1315 43-125 (233)
167 PRK10787 DNA-binding ATP-depen 97.3 0.0038 8.3E-08 80.1 16.0 166 186-364 321-506 (784)
168 PTZ00361 26 proteosome regulat 97.3 0.0013 2.8E-08 77.8 10.9 158 187-365 183-368 (438)
169 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0031 6.7E-08 82.8 15.1 157 187-364 173-349 (852)
170 TIGR00602 rad24 checkpoint pro 97.2 0.0017 3.7E-08 80.1 11.7 51 186-237 83-133 (637)
171 TIGR03689 pup_AAA proteasome A 97.2 0.0046 9.9E-08 74.4 14.5 167 187-364 182-378 (512)
172 PRK11034 clpA ATP-dependent Cl 97.2 0.002 4.3E-08 81.9 12.1 157 187-364 186-362 (758)
173 COG5238 RNA1 Ran GTPase-activa 97.2 2.3E-05 5E-10 81.3 -4.1 86 596-681 26-131 (388)
174 COG3267 ExeA Type II secretory 97.2 0.01 2.2E-07 62.6 14.8 182 213-399 50-247 (269)
175 PRK08116 hypothetical protein; 97.2 0.0015 3.2E-08 72.9 9.6 103 215-333 115-220 (268)
176 KOG0741 AAA+-type ATPase [Post 97.1 0.0074 1.6E-07 69.2 14.5 149 212-387 536-704 (744)
177 PTZ00454 26S protease regulato 97.1 0.0034 7.4E-08 73.9 12.6 157 187-364 145-329 (398)
178 PRK08769 DNA polymerase III su 97.1 0.015 3.2E-07 66.1 16.9 96 293-398 112-209 (319)
179 smart00382 AAA ATPases associa 97.1 0.0017 3.7E-08 65.6 8.7 87 215-306 3-90 (148)
180 PRK10865 protein disaggregatio 97.0 0.0048 1E-07 80.6 13.9 45 187-237 178-222 (857)
181 PRK10536 hypothetical protein; 97.0 0.0035 7.5E-08 67.4 9.9 134 188-334 56-213 (262)
182 PRK06090 DNA polymerase III su 97.0 0.017 3.7E-07 65.5 15.9 177 195-397 11-201 (319)
183 KOG3665 ZYG-1-like serine/thre 97.0 0.0004 8.6E-09 87.2 3.2 78 623-702 122-203 (699)
184 COG1373 Predicted ATPase (AAA+ 97.0 0.0081 1.7E-07 71.2 13.8 119 216-360 39-163 (398)
185 CHL00176 ftsH cell division pr 96.9 0.008 1.7E-07 75.1 13.9 177 187-389 183-386 (638)
186 KOG1644 U2-associated snRNP A' 96.9 0.00099 2.2E-08 66.9 4.5 105 1207-1313 42-150 (233)
187 KOG2004 Mitochondrial ATP-depe 96.9 0.01 2.2E-07 70.9 13.4 104 186-304 410-515 (906)
188 KOG1514 Origin recognition com 96.9 0.015 3.3E-07 69.7 14.6 206 188-397 397-621 (767)
189 PRK06871 DNA polymerase III su 96.9 0.036 7.8E-07 63.1 17.1 176 196-394 11-200 (325)
190 PRK08058 DNA polymerase III su 96.9 0.015 3.2E-07 67.4 14.4 163 188-362 6-180 (329)
191 PRK08118 topology modulation p 96.8 0.00055 1.2E-08 70.4 2.3 35 215-249 2-37 (167)
192 COG1222 RPT1 ATP-dependent 26S 96.8 0.015 3.2E-07 64.1 13.0 188 188-402 152-372 (406)
193 PF13177 DNA_pol3_delta2: DNA 96.8 0.01 2.3E-07 60.7 11.3 136 191-351 1-161 (162)
194 TIGR01241 FtsH_fam ATP-depende 96.8 0.0082 1.8E-07 74.2 12.6 179 187-391 55-260 (495)
195 KOG0991 Replication factor C, 96.8 0.014 3E-07 59.9 11.4 44 187-236 27-70 (333)
196 COG0466 Lon ATP-dependent Lon 96.7 0.013 2.9E-07 70.5 12.8 164 186-364 322-508 (782)
197 PF04665 Pox_A32: Poxvirus A32 96.7 0.0028 6.1E-08 67.9 6.7 36 215-252 14-49 (241)
198 KOG2123 Uncharacterized conser 96.7 8E-05 1.7E-09 77.7 -5.2 83 1208-1294 20-103 (388)
199 KOG3665 ZYG-1-like serine/thre 96.7 0.0007 1.5E-08 85.1 1.7 135 1207-1343 122-266 (699)
200 TIGR02640 gas_vesic_GvpN gas v 96.6 0.03 6.5E-07 62.7 14.4 55 195-262 10-64 (262)
201 PRK12377 putative replication 96.6 0.0048 1E-07 67.4 7.7 101 215-333 102-205 (248)
202 COG5238 RNA1 Ran GTPase-activa 96.6 0.0017 3.7E-08 67.8 3.9 84 1207-1291 30-132 (388)
203 TIGR02639 ClpA ATP-dependent C 96.6 0.038 8.2E-07 71.7 17.2 121 187-319 454-578 (731)
204 PRK08181 transposase; Validate 96.6 0.0034 7.3E-08 69.5 6.5 101 215-334 107-209 (269)
205 COG2607 Predicted ATPase (AAA+ 96.6 0.027 6E-07 58.4 12.2 121 185-333 58-182 (287)
206 COG2812 DnaX DNA polymerase II 96.6 0.0058 1.3E-07 72.8 8.3 189 188-392 17-215 (515)
207 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0023 5E-08 72.5 4.7 51 188-238 52-102 (361)
208 PRK08939 primosomal protein Dn 96.5 0.0066 1.4E-07 68.9 8.3 122 191-333 135-260 (306)
209 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0091 2E-07 66.2 9.2 49 213-261 18-70 (235)
210 PF10443 RNA12: RNA12 protein; 96.5 0.062 1.3E-06 61.9 15.5 212 192-415 1-297 (431)
211 PRK06921 hypothetical protein; 96.5 0.0087 1.9E-07 66.6 8.5 99 214-333 117-224 (266)
212 KOG1947 Leucine rich repeat pr 96.4 0.00073 1.6E-08 84.7 -0.1 16 1275-1290 358-373 (482)
213 PRK07993 DNA polymerase III su 96.4 0.081 1.7E-06 61.1 16.3 181 195-397 10-204 (334)
214 PF01695 IstB_IS21: IstB-like 96.4 0.0033 7.2E-08 65.3 4.6 99 215-333 48-149 (178)
215 PRK10865 protein disaggregatio 96.4 0.017 3.7E-07 75.6 12.0 137 187-333 568-720 (857)
216 PRK07952 DNA replication prote 96.4 0.015 3.3E-07 63.4 9.6 103 214-333 99-204 (244)
217 PRK11889 flhF flagellar biosyn 96.4 0.022 4.9E-07 64.9 11.2 89 213-305 240-331 (436)
218 PF07693 KAP_NTPase: KAP famil 96.4 0.092 2E-06 61.6 17.2 44 192-238 1-44 (325)
219 COG0542 clpA ATP-binding subun 96.4 0.0065 1.4E-07 75.4 7.5 121 186-320 490-619 (786)
220 PRK09361 radB DNA repair and r 96.4 0.0093 2E-07 65.5 8.2 46 213-261 22-67 (225)
221 TIGR03345 VI_ClpV1 type VI sec 96.3 0.0073 1.6E-07 78.6 8.1 138 186-333 565-718 (852)
222 PRK09183 transposase/IS protei 96.3 0.005 1.1E-07 68.4 5.5 100 215-333 103-205 (259)
223 PRK06964 DNA polymerase III su 96.3 0.053 1.2E-06 62.2 13.8 94 293-398 131-226 (342)
224 PF13306 LRR_5: Leucine rich r 96.3 0.011 2.4E-07 58.2 7.5 83 1227-1312 8-90 (129)
225 PF02562 PhoH: PhoH-like prote 96.3 0.0025 5.3E-08 66.8 2.7 131 191-334 4-156 (205)
226 PRK06526 transposase; Provisio 96.3 0.0051 1.1E-07 67.8 5.3 100 215-334 99-201 (254)
227 TIGR03346 chaperone_ClpB ATP-d 96.3 0.016 3.4E-07 76.3 10.7 137 187-333 565-717 (852)
228 KOG2123 Uncharacterized conser 96.2 0.00041 8.8E-09 72.6 -3.2 103 599-704 18-127 (388)
229 TIGR02237 recomb_radB DNA repa 96.2 0.014 3.1E-07 63.2 8.3 49 212-263 10-58 (209)
230 PRK07261 topology modulation p 96.2 0.011 2.4E-07 61.2 7.1 22 216-237 2-23 (171)
231 KOG2739 Leucine-rich acidic nu 96.2 0.0012 2.7E-08 69.5 -0.1 89 1225-1315 37-128 (260)
232 KOG1947 Leucine rich repeat pr 96.2 0.00055 1.2E-08 85.8 -3.5 110 1207-1316 188-308 (482)
233 PRK12608 transcription termina 96.2 0.024 5.2E-07 64.7 9.9 102 196-303 120-229 (380)
234 PF07728 AAA_5: AAA domain (dy 96.1 0.0023 4.9E-08 64.2 1.6 84 217-314 2-85 (139)
235 TIGR01243 CDC48 AAA family ATP 96.1 0.048 1E-06 71.0 14.0 179 187-391 453-657 (733)
236 COG1875 NYN ribonuclease and A 96.1 0.018 3.9E-07 63.5 8.3 136 190-334 227-388 (436)
237 KOG0744 AAA+-type ATPase [Post 96.1 0.054 1.2E-06 58.7 11.2 79 214-303 177-259 (423)
238 PRK06835 DNA replication prote 96.0 0.0094 2E-07 68.2 6.1 102 215-333 184-288 (329)
239 PF00158 Sigma54_activat: Sigm 96.0 0.015 3.2E-07 59.8 6.8 45 189-237 1-45 (168)
240 COG1223 Predicted ATPase (AAA+ 96.0 0.058 1.3E-06 56.5 10.8 157 187-364 121-297 (368)
241 CHL00195 ycf46 Ycf46; Provisio 96.0 0.036 7.8E-07 67.0 10.8 157 188-365 229-406 (489)
242 PRK05541 adenylylsulfate kinas 96.0 0.023 4.9E-07 59.6 8.2 36 213-250 6-41 (176)
243 TIGR01243 CDC48 AAA family ATP 96.0 0.03 6.4E-07 73.0 11.0 181 187-393 178-383 (733)
244 COG0470 HolB ATPase involved i 95.9 0.035 7.5E-07 65.2 10.5 142 188-350 2-167 (325)
245 PRK04132 replication factor C 95.9 0.12 2.6E-06 66.2 15.4 156 222-398 574-732 (846)
246 CHL00095 clpC Clp protease ATP 95.9 0.026 5.7E-07 74.1 10.1 137 187-333 509-661 (821)
247 PF00560 LRR_1: Leucine Rich R 95.9 0.0041 9E-08 38.9 1.2 19 625-643 2-20 (22)
248 PRK04296 thymidine kinase; Pro 95.8 0.012 2.7E-07 62.1 5.6 114 215-335 3-117 (190)
249 PF08423 Rad51: Rad51; InterP 95.8 0.022 4.9E-07 63.1 7.8 56 213-269 37-96 (256)
250 KOG2739 Leucine-rich acidic nu 95.8 0.0043 9.3E-08 65.5 2.0 82 621-705 63-154 (260)
251 cd01133 F1-ATPase_beta F1 ATP 95.8 0.027 5.8E-07 61.9 8.1 87 215-303 70-172 (274)
252 KOG2228 Origin recognition com 95.8 0.11 2.4E-06 57.0 12.2 172 188-364 25-219 (408)
253 PF13207 AAA_17: AAA domain; P 95.8 0.0067 1.5E-07 59.0 3.0 21 216-236 1-21 (121)
254 PRK06696 uridine kinase; Valid 95.7 0.012 2.7E-07 64.2 5.2 43 191-236 2-44 (223)
255 PF00448 SRP54: SRP54-type pro 95.7 0.034 7.4E-07 58.7 8.3 89 214-304 1-93 (196)
256 cd00983 recA RecA is a bacter 95.7 0.02 4.4E-07 64.7 6.8 85 212-303 53-142 (325)
257 cd01393 recA_like RecA is a b 95.7 0.058 1.3E-06 59.3 10.5 89 213-304 18-124 (226)
258 TIGR02012 tigrfam_recA protein 95.6 0.023 5E-07 64.2 7.0 86 212-304 53-143 (321)
259 TIGR02902 spore_lonB ATP-depen 95.6 0.035 7.6E-07 68.6 8.9 43 188-236 66-108 (531)
260 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.054 1.2E-06 54.3 8.4 117 215-334 3-138 (159)
261 PRK08699 DNA polymerase III su 95.5 0.096 2.1E-06 60.2 11.7 70 294-363 113-184 (325)
262 PRK09354 recA recombinase A; P 95.5 0.029 6.3E-07 63.9 7.3 86 212-304 58-148 (349)
263 PRK15455 PrkA family serine pr 95.5 0.01 2.2E-07 70.7 3.7 49 188-236 77-125 (644)
264 PF13306 LRR_5: Leucine rich r 95.5 0.039 8.5E-07 54.3 7.4 117 1207-1329 12-128 (129)
265 cd01394 radB RadB. The archaea 95.5 0.041 8.9E-07 60.0 8.1 43 213-257 18-60 (218)
266 TIGR02238 recomb_DMC1 meiotic 95.4 0.038 8.2E-07 63.0 7.8 58 213-271 95-156 (313)
267 KOG0731 AAA+-type ATPase conta 95.4 0.15 3.3E-06 63.2 13.1 184 187-395 311-522 (774)
268 TIGR03499 FlhF flagellar biosy 95.4 0.05 1.1E-06 61.4 8.5 87 213-303 193-281 (282)
269 PRK04301 radA DNA repair and r 95.3 0.045 9.8E-07 63.3 8.3 57 213-270 101-161 (317)
270 PRK11034 clpA ATP-dependent Cl 95.3 0.046 9.9E-07 69.8 8.6 120 187-319 458-582 (758)
271 PLN03187 meiotic recombination 95.3 0.049 1.1E-06 62.5 8.0 59 212-271 124-186 (344)
272 cd01131 PilT Pilus retraction 95.3 0.022 4.7E-07 60.8 4.9 112 215-338 2-113 (198)
273 PHA02244 ATPase-like protein 95.2 0.08 1.7E-06 60.3 9.4 43 187-237 96-142 (383)
274 PF05659 RPW8: Arabidopsis bro 95.2 0.41 8.8E-06 47.4 13.1 79 4-86 6-86 (147)
275 TIGR01650 PD_CobS cobaltochela 95.2 0.25 5.5E-06 55.7 13.1 58 189-259 47-104 (327)
276 cd03238 ABC_UvrA The excision 95.2 0.094 2E-06 54.3 9.1 114 215-338 22-153 (176)
277 COG0572 Udk Uridine kinase [Nu 95.2 0.041 9E-07 57.6 6.3 79 212-295 6-85 (218)
278 PRK13695 putative NTPase; Prov 95.1 0.027 5.8E-07 58.9 5.0 22 216-237 2-23 (174)
279 COG0468 RecA RecA/RadA recombi 95.1 0.085 1.8E-06 58.3 9.0 90 211-303 57-150 (279)
280 COG0542 clpA ATP-binding subun 95.1 0.049 1.1E-06 68.0 7.8 154 187-363 170-345 (786)
281 KOG1969 DNA replication checkp 95.1 0.048 1E-06 65.7 7.3 77 211-306 323-399 (877)
282 cd03247 ABCC_cytochrome_bd The 95.1 0.099 2.1E-06 54.8 9.2 118 215-338 29-161 (178)
283 KOG0734 AAA+-type ATPase conta 95.1 0.073 1.6E-06 61.6 8.4 53 188-240 305-363 (752)
284 PF00560 LRR_1: Leucine Rich R 95.1 0.013 2.8E-07 36.7 1.5 22 601-622 1-22 (22)
285 KOG0730 AAA+-type ATPase [Post 95.1 0.23 4.9E-06 59.8 12.8 158 188-366 435-617 (693)
286 PRK06762 hypothetical protein; 95.0 0.21 4.6E-06 51.7 11.5 23 214-236 2-24 (166)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.11 2.5E-06 52.0 9.1 104 215-338 27-131 (144)
288 PRK08233 hypothetical protein; 95.0 0.048 1E-06 57.6 6.8 24 214-237 3-26 (182)
289 COG4608 AppF ABC-type oligopep 95.0 0.081 1.7E-06 57.1 8.3 125 215-342 40-178 (268)
290 cd03228 ABCC_MRP_Like The MRP 95.0 0.09 1.9E-06 54.7 8.7 118 215-339 29-160 (171)
291 cd03214 ABC_Iron-Siderophores_ 95.0 0.14 3.1E-06 53.8 10.2 120 215-338 26-162 (180)
292 KOG0733 Nuclear AAA ATPase (VC 95.0 0.35 7.6E-06 57.3 13.8 98 187-305 190-293 (802)
293 PRK14722 flhF flagellar biosyn 95.0 0.065 1.4E-06 62.0 8.0 89 214-305 137-226 (374)
294 KOG0733 Nuclear AAA ATPase (VC 95.0 0.17 3.6E-06 59.9 11.1 155 214-391 545-718 (802)
295 COG1419 FlhF Flagellar GTP-bin 95.0 0.072 1.6E-06 61.0 8.1 89 214-306 203-293 (407)
296 COG2884 FtsE Predicted ATPase 95.0 0.15 3.3E-06 51.3 9.3 62 279-341 140-204 (223)
297 cd01120 RecA-like_NTPases RecA 95.0 0.091 2E-06 54.3 8.6 40 216-257 1-40 (165)
298 PF14532 Sigma54_activ_2: Sigm 95.0 0.023 4.9E-07 56.7 3.8 107 190-333 1-109 (138)
299 PF13604 AAA_30: AAA domain; P 94.9 0.052 1.1E-06 57.7 6.6 106 215-333 19-130 (196)
300 COG1484 DnaC DNA replication p 94.9 0.057 1.2E-06 59.7 7.0 81 214-312 105-185 (254)
301 COG1618 Predicted nucleotide k 94.9 0.023 4.9E-07 55.3 3.3 24 215-238 6-29 (179)
302 KOG0728 26S proteasome regulat 94.9 0.26 5.7E-06 51.2 10.9 190 188-400 147-366 (404)
303 cd03223 ABCD_peroxisomal_ALDP 94.9 0.16 3.4E-06 52.5 9.8 116 215-338 28-152 (166)
304 PRK05800 cobU adenosylcobinami 94.8 0.029 6.2E-07 57.7 4.1 81 216-303 3-85 (170)
305 KOG2035 Replication factor C, 94.8 0.56 1.2E-05 50.2 13.3 205 189-416 15-257 (351)
306 PF07724 AAA_2: AAA domain (Cd 94.8 0.026 5.6E-07 58.2 3.7 42 214-257 3-45 (171)
307 TIGR02239 recomb_RAD51 DNA rep 94.8 0.069 1.5E-06 61.1 7.6 57 213-270 95-155 (316)
308 KOG0473 Leucine-rich repeat pr 94.8 0.0025 5.5E-08 65.1 -3.5 85 596-681 38-122 (326)
309 KOG1051 Chaperone HSP104 and r 94.8 0.11 2.5E-06 65.8 9.8 120 187-319 562-685 (898)
310 TIGR02236 recomb_radA DNA repa 94.7 0.089 1.9E-06 60.9 8.4 57 213-270 94-154 (310)
311 COG2842 Uncharacterized ATPase 94.7 0.23 5E-06 54.2 10.6 101 215-324 95-195 (297)
312 cd03216 ABC_Carb_Monos_I This 94.7 0.079 1.7E-06 54.5 7.0 116 215-338 27-146 (163)
313 PRK12723 flagellar biosynthesi 94.6 0.16 3.6E-06 59.3 10.0 90 213-306 173-266 (388)
314 PRK00771 signal recognition pa 94.6 0.19 4.2E-06 59.8 10.7 26 212-237 93-118 (437)
315 COG0464 SpoVK ATPases of the A 94.6 0.27 5.8E-06 61.2 12.6 133 212-365 274-424 (494)
316 PLN03186 DNA repair protein RA 94.5 0.16 3.5E-06 58.4 9.7 58 213-271 122-183 (342)
317 PRK05703 flhF flagellar biosyn 94.4 0.21 4.6E-06 59.7 10.8 89 214-305 221-310 (424)
318 cd03222 ABC_RNaseL_inhibitor T 94.4 0.16 3.4E-06 52.7 8.5 103 215-339 26-137 (177)
319 PRK13948 shikimate kinase; Pro 94.4 0.27 5.9E-06 51.1 10.2 24 213-236 9-32 (182)
320 PLN00020 ribulose bisphosphate 94.4 0.072 1.6E-06 60.1 6.3 26 212-237 146-171 (413)
321 PRK12727 flagellar biosynthesi 94.4 0.17 3.6E-06 60.6 9.6 88 213-304 349-438 (559)
322 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.053 1.2E-06 58.4 5.2 23 214-236 29-51 (213)
323 PRK13531 regulatory ATPase Rav 94.4 0.039 8.5E-07 65.2 4.5 42 188-237 21-62 (498)
324 PF13671 AAA_33: AAA domain; P 94.4 0.076 1.7E-06 53.4 6.1 21 216-236 1-21 (143)
325 KOG0735 AAA+-type ATPase [Post 94.4 0.076 1.6E-06 63.7 6.6 72 214-304 431-504 (952)
326 cd00544 CobU Adenosylcobinamid 94.4 0.11 2.4E-06 53.3 7.2 79 217-303 2-82 (169)
327 COG1136 SalX ABC-type antimicr 94.4 0.26 5.7E-06 52.4 10.0 61 281-341 147-210 (226)
328 TIGR00064 ftsY signal recognit 94.4 0.18 3.9E-06 56.4 9.5 91 212-305 70-165 (272)
329 PRK12726 flagellar biosynthesi 94.4 0.25 5.4E-06 56.6 10.4 90 213-305 205-296 (407)
330 TIGR00390 hslU ATP-dependent p 94.3 0.11 2.5E-06 60.0 7.8 82 186-269 11-104 (441)
331 PF00154 RecA: recA bacterial 94.3 0.12 2.7E-06 58.3 7.9 86 212-304 51-141 (322)
332 PRK14974 cell division protein 94.3 0.2 4.4E-06 57.4 9.8 91 213-306 139-234 (336)
333 cd03246 ABCC_Protease_Secretio 94.3 0.13 2.8E-06 53.6 7.7 117 215-338 29-160 (173)
334 COG1126 GlnQ ABC-type polar am 94.2 0.44 9.5E-06 49.4 10.7 124 215-341 29-203 (240)
335 PRK06067 flagellar accessory p 94.1 0.15 3.2E-06 56.3 8.3 88 212-304 23-130 (234)
336 PRK12724 flagellar biosynthesi 94.1 0.12 2.7E-06 60.1 7.6 24 213-236 222-245 (432)
337 PF00006 ATP-synt_ab: ATP synt 94.1 0.12 2.6E-06 55.1 7.1 83 215-303 16-114 (215)
338 PF00485 PRK: Phosphoribulokin 94.1 0.18 3.8E-06 53.8 8.4 81 216-298 1-87 (194)
339 PRK10867 signal recognition pa 94.1 0.16 3.5E-06 60.3 8.8 24 213-236 99-122 (433)
340 cd01125 repA Hexameric Replica 94.1 0.2 4.3E-06 55.5 9.1 21 216-236 3-23 (239)
341 COG0563 Adk Adenylate kinase a 94.1 0.075 1.6E-06 55.0 5.2 22 216-237 2-23 (178)
342 PRK07667 uridine kinase; Provi 94.1 0.068 1.5E-06 56.7 5.1 37 196-236 3-39 (193)
343 cd03230 ABC_DR_subfamily_A Thi 94.1 0.23 4.9E-06 51.8 8.9 119 215-339 27-160 (173)
344 PRK10733 hflB ATP-dependent me 94.0 0.28 6E-06 62.5 11.1 156 188-364 153-335 (644)
345 PF12775 AAA_7: P-loop contain 94.0 0.074 1.6E-06 59.5 5.4 96 196-311 22-117 (272)
346 cd03115 SRP The signal recogni 93.9 0.2 4.2E-06 52.3 8.2 22 216-237 2-23 (173)
347 PF01583 APS_kinase: Adenylyls 93.9 0.071 1.5E-06 53.2 4.5 36 214-251 2-37 (156)
348 PRK07132 DNA polymerase III su 93.9 1.9 4.2E-05 48.8 16.4 152 214-396 18-184 (299)
349 PTZ00035 Rad51 protein; Provis 93.9 0.36 7.8E-06 55.8 10.9 58 212-270 116-177 (337)
350 PRK05439 pantothenate kinase; 93.9 0.27 5.9E-06 55.5 9.5 81 211-295 83-166 (311)
351 PF08298 AAA_PrkA: PrkA AAA do 93.9 0.071 1.5E-06 60.0 4.9 51 186-236 60-110 (358)
352 TIGR00959 ffh signal recogniti 93.9 0.17 3.7E-06 60.0 8.4 25 213-237 98-122 (428)
353 cd02019 NK Nucleoside/nucleoti 93.8 0.044 9.6E-07 46.6 2.5 22 216-237 1-22 (69)
354 PRK09270 nucleoside triphospha 93.8 0.24 5.3E-06 54.3 9.0 26 211-236 30-55 (229)
355 PF13238 AAA_18: AAA domain; P 93.8 0.042 9.2E-07 54.0 2.8 21 217-237 1-21 (129)
356 PRK05201 hslU ATP-dependent pr 93.8 0.14 3.1E-06 59.3 7.2 82 186-269 14-107 (443)
357 PTZ00301 uridine kinase; Provi 93.8 0.073 1.6E-06 56.8 4.6 23 214-236 3-25 (210)
358 PRK06547 hypothetical protein; 93.7 0.082 1.8E-06 54.5 4.8 26 212-237 13-38 (172)
359 TIGR01817 nifA Nif-specific re 93.7 0.24 5.3E-06 62.1 10.0 48 186-237 195-242 (534)
360 COG1121 ZnuC ABC-type Mn/Zn tr 93.7 0.17 3.7E-06 54.7 7.2 124 215-338 31-203 (254)
361 PRK05480 uridine/cytidine kina 93.6 0.057 1.2E-06 58.4 3.7 25 213-237 5-29 (209)
362 COG0396 sufC Cysteine desulfur 93.6 0.4 8.6E-06 50.2 9.2 64 283-346 151-216 (251)
363 TIGR00554 panK_bact pantothena 93.5 0.28 6E-06 55.0 8.9 25 212-236 60-84 (290)
364 PF07726 AAA_3: ATPase family 93.5 0.036 7.9E-07 52.5 1.6 28 217-246 2-29 (131)
365 cd03229 ABC_Class3 This class 93.5 0.15 3.3E-06 53.4 6.4 23 215-237 27-49 (178)
366 COG1428 Deoxynucleoside kinase 93.4 0.053 1.1E-06 55.9 2.7 25 214-238 4-28 (216)
367 cd01122 GP4d_helicase GP4d_hel 93.4 0.48 1E-05 53.7 10.9 52 215-269 31-82 (271)
368 PRK00889 adenylylsulfate kinas 93.4 0.3 6.5E-06 51.0 8.6 24 214-237 4-27 (175)
369 TIGR00708 cobA cob(I)alamin ad 93.4 0.35 7.7E-06 49.2 8.5 119 215-334 6-140 (173)
370 TIGR02858 spore_III_AA stage I 93.4 0.29 6.3E-06 54.4 8.7 131 195-339 97-234 (270)
371 KOG0473 Leucine-rich repeat pr 93.4 0.0066 1.4E-07 62.2 -3.8 87 612-700 30-117 (326)
372 TIGR00235 udk uridine kinase. 93.3 0.072 1.6E-06 57.4 3.8 24 213-236 5-28 (207)
373 PRK11608 pspF phage shock prot 93.3 0.13 2.8E-06 59.6 6.2 45 188-236 7-51 (326)
374 cd01135 V_A-ATPase_B V/A-type 93.3 0.28 6E-06 53.9 8.2 89 215-303 70-175 (276)
375 PRK15429 formate hydrogenlyase 93.3 0.18 3.9E-06 65.3 8.1 134 187-333 376-520 (686)
376 PRK08533 flagellar accessory p 93.3 0.35 7.6E-06 52.8 9.1 48 214-265 24-71 (230)
377 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.25 5.5E-06 52.9 7.8 119 215-339 27-169 (200)
378 cd02025 PanK Pantothenate kina 93.3 0.27 5.8E-06 53.3 8.0 21 216-236 1-21 (220)
379 COG1102 Cmk Cytidylate kinase 93.3 0.087 1.9E-06 51.5 3.7 44 216-272 2-45 (179)
380 TIGR02974 phageshock_pspF psp 93.2 0.22 4.7E-06 57.7 7.7 45 189-237 1-45 (329)
381 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.27 5.9E-06 54.2 8.2 48 213-264 20-67 (237)
382 cd01121 Sms Sms (bacterial rad 93.2 0.27 5.8E-06 57.6 8.4 82 214-303 82-167 (372)
383 TIGR00382 clpX endopeptidase C 93.1 0.39 8.5E-06 56.6 9.6 51 186-236 76-138 (413)
384 cd02024 NRK1 Nicotinamide ribo 93.1 0.13 2.9E-06 53.5 5.1 22 216-237 1-22 (187)
385 KOG0736 Peroxisome assembly fa 93.1 1.9 4.2E-05 53.0 15.1 149 188-357 673-849 (953)
386 PRK14721 flhF flagellar biosyn 93.0 0.41 8.8E-06 56.5 9.5 24 213-236 190-213 (420)
387 TIGR03575 selen_PSTK_euk L-ser 92.9 0.22 4.8E-06 57.0 7.0 21 217-237 2-22 (340)
388 PF13481 AAA_25: AAA domain; P 92.9 0.075 1.6E-06 56.8 3.1 42 215-256 33-82 (193)
389 PRK06002 fliI flagellum-specif 92.9 0.25 5.4E-06 58.4 7.6 86 215-303 166-263 (450)
390 PF13504 LRR_7: Leucine rich r 92.9 0.06 1.3E-06 31.2 1.2 16 624-639 2-17 (17)
391 PF00910 RNA_helicase: RNA hel 92.9 0.058 1.3E-06 50.8 2.0 21 217-237 1-21 (107)
392 PHA00729 NTP-binding motif con 92.8 0.14 3E-06 54.6 4.8 25 213-237 16-40 (226)
393 PTZ00494 tuzin-like protein; P 92.8 2 4.4E-05 49.4 14.0 168 185-364 369-544 (664)
394 PRK14723 flhF flagellar biosyn 92.8 0.65 1.4E-05 58.7 11.4 87 214-304 185-273 (767)
395 PRK06731 flhF flagellar biosyn 92.8 0.51 1.1E-05 52.4 9.5 90 214-306 75-166 (270)
396 COG4618 ArpD ABC-type protease 92.8 0.35 7.6E-06 56.4 8.2 22 215-236 363-384 (580)
397 PRK05986 cob(I)alamin adenolsy 92.8 0.38 8.3E-06 49.7 7.8 119 214-334 22-158 (191)
398 PF03308 ArgK: ArgK protein; 92.7 0.18 3.8E-06 54.2 5.4 60 195-258 14-73 (266)
399 cd00267 ABC_ATPase ABC (ATP-bi 92.7 0.22 4.7E-06 51.0 6.1 118 215-339 26-145 (157)
400 PTZ00088 adenylate kinase 1; P 92.6 0.12 2.7E-06 55.9 4.3 22 216-237 8-29 (229)
401 cd03282 ABC_MSH4_euk MutS4 hom 92.6 0.2 4.3E-06 53.5 5.8 120 214-342 29-159 (204)
402 PRK05022 anaerobic nitric oxid 92.6 0.25 5.5E-06 61.3 7.6 134 186-333 186-331 (509)
403 PRK09519 recA DNA recombinatio 92.6 0.28 6.2E-06 62.0 7.9 84 213-303 59-147 (790)
404 cd02028 UMPK_like Uridine mono 92.5 0.19 4E-06 52.6 5.4 22 216-237 1-22 (179)
405 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.3 6.5E-06 54.5 7.4 40 213-254 35-74 (259)
406 PRK03839 putative kinase; Prov 92.5 0.088 1.9E-06 55.4 3.0 22 216-237 2-23 (180)
407 cd03215 ABC_Carb_Monos_II This 92.5 0.34 7.3E-06 51.0 7.4 23 215-237 27-49 (182)
408 PRK05917 DNA polymerase III su 92.5 1.4 3E-05 49.3 12.3 59 293-351 94-154 (290)
409 cd03232 ABC_PDR_domain2 The pl 92.5 0.47 1E-05 50.4 8.6 22 215-236 34-55 (192)
410 PRK04040 adenylate kinase; Pro 92.5 0.096 2.1E-06 55.0 3.2 23 214-236 2-24 (188)
411 cd02021 GntK Gluconate kinase 92.5 0.64 1.4E-05 47.1 9.2 22 216-237 1-22 (150)
412 TIGR00150 HI0065_YjeE ATPase, 92.4 0.19 4E-06 48.8 4.8 40 194-237 6-45 (133)
413 cd03283 ABC_MutS-like MutS-lik 92.4 0.13 2.8E-06 54.8 4.1 22 215-236 26-47 (199)
414 PTZ00185 ATPase alpha subunit; 92.4 0.48 1E-05 56.1 8.9 87 215-303 190-298 (574)
415 PRK00625 shikimate kinase; Pro 92.4 0.09 2E-06 54.2 2.8 22 216-237 2-23 (173)
416 cd03244 ABCC_MRP_domain2 Domai 92.4 0.67 1.5E-05 50.6 9.9 22 215-236 31-52 (221)
417 KOG0727 26S proteasome regulat 92.4 1.2 2.6E-05 46.6 10.6 51 187-237 155-212 (408)
418 cd02027 APSK Adenosine 5'-phos 92.4 0.63 1.4E-05 46.9 8.8 22 216-237 1-22 (149)
419 COG4088 Predicted nucleotide k 92.4 0.37 8.1E-06 49.1 6.8 22 215-236 2-23 (261)
420 TIGR01360 aden_kin_iso1 adenyl 92.3 0.11 2.4E-06 55.2 3.5 24 213-236 2-25 (188)
421 PRK05342 clpX ATP-dependent pr 92.3 0.26 5.6E-06 58.5 6.8 51 186-236 70-130 (412)
422 COG1703 ArgK Putative periplas 92.3 0.18 3.9E-06 54.8 4.9 63 196-262 37-99 (323)
423 COG0003 ArsA Predicted ATPase 92.3 0.19 4.2E-06 56.9 5.4 49 214-264 2-50 (322)
424 PRK10463 hydrogenase nickel in 92.3 0.53 1.2E-05 52.3 8.6 26 212-237 102-127 (290)
425 PRK04328 hypothetical protein; 92.2 0.31 6.7E-06 54.1 7.0 41 213-255 22-62 (249)
426 PF08433 KTI12: Chromatin asso 92.2 0.2 4.3E-06 55.8 5.4 23 215-237 2-24 (270)
427 COG0465 HflB ATP-dependent Zn 92.2 1 2.2E-05 55.0 11.7 182 186-393 149-357 (596)
428 KOG0079 GTP-binding protein H- 92.2 0.13 2.9E-06 48.5 3.3 83 217-306 11-93 (198)
429 PRK08972 fliI flagellum-specif 92.2 0.37 8.1E-06 56.6 7.7 85 215-303 163-261 (444)
430 PRK13543 cytochrome c biogenes 92.2 0.89 1.9E-05 49.3 10.4 23 215-237 38-60 (214)
431 cd03369 ABCC_NFT1 Domain 2 of 92.2 0.97 2.1E-05 48.7 10.6 22 215-236 35-56 (207)
432 PF06309 Torsin: Torsin; Inte 92.1 0.23 4.9E-06 47.1 4.8 50 188-237 26-76 (127)
433 COG0714 MoxR-like ATPases [Gen 92.1 0.26 5.7E-06 57.5 6.5 64 188-264 25-88 (329)
434 PRK12597 F0F1 ATP synthase sub 92.1 0.34 7.3E-06 57.8 7.4 88 215-303 144-246 (461)
435 KOG1532 GTPase XAB1, interacts 92.1 0.61 1.3E-05 49.6 8.2 27 211-237 16-42 (366)
436 KOG0652 26S proteasome regulat 92.1 3.5 7.6E-05 43.5 13.6 49 188-236 172-227 (424)
437 PRK06995 flhF flagellar biosyn 92.1 0.81 1.8E-05 55.0 10.5 24 214-237 256-279 (484)
438 PRK10751 molybdopterin-guanine 92.0 0.15 3.2E-06 52.1 3.8 25 213-237 5-29 (173)
439 COG2019 AdkA Archaeal adenylat 92.0 0.14 3.1E-06 50.2 3.4 23 214-236 4-26 (189)
440 cd03213 ABCG_EPDR ABCG transpo 92.0 0.75 1.6E-05 48.9 9.4 23 215-237 36-58 (194)
441 KOG4252 GTP-binding protein [S 92.0 0.26 5.7E-06 48.2 5.1 37 215-252 21-57 (246)
442 PRK09280 F0F1 ATP synthase sub 92.0 0.51 1.1E-05 56.1 8.6 88 215-303 145-247 (463)
443 COG1936 Predicted nucleotide k 91.9 0.12 2.6E-06 51.3 2.9 20 216-235 2-21 (180)
444 COG4181 Predicted ABC-type tra 91.9 1.4 3E-05 43.7 9.8 87 256-342 121-215 (228)
445 cd03243 ABC_MutS_homologs The 91.9 0.14 3.1E-06 54.9 3.6 22 215-236 30-51 (202)
446 COG1066 Sms Predicted ATP-depe 91.8 0.53 1.2E-05 53.6 8.0 82 214-304 93-178 (456)
447 PRK15453 phosphoribulokinase; 91.8 0.65 1.4E-05 51.1 8.5 24 213-236 4-27 (290)
448 COG3640 CooC CO dehydrogenase 91.8 0.23 5E-06 52.0 4.8 42 216-258 2-43 (255)
449 cd03240 ABC_Rad50 The catalyti 91.8 0.53 1.1E-05 50.4 7.9 61 286-348 131-195 (204)
450 PF10236 DAP3: Mitochondrial r 91.7 0.72 1.6E-05 52.8 9.4 49 345-394 258-306 (309)
451 TIGR03881 KaiC_arch_4 KaiC dom 91.7 0.68 1.5E-05 50.9 8.9 41 213-255 19-59 (229)
452 PRK13765 ATP-dependent proteas 91.7 0.26 5.5E-06 61.7 6.0 75 187-271 31-105 (637)
453 PRK10820 DNA-binding transcrip 91.7 0.37 8E-06 59.8 7.5 45 188-236 205-249 (520)
454 PRK09544 znuC high-affinity zi 91.6 0.71 1.5E-05 51.4 9.0 23 215-237 31-53 (251)
455 TIGR01069 mutS2 MutS2 family p 91.6 0.11 2.4E-06 66.9 2.9 187 214-415 322-518 (771)
456 COG0467 RAD55 RecA-superfamily 91.6 0.18 4E-06 56.6 4.4 42 212-255 21-62 (260)
457 cd02023 UMPK Uridine monophosp 91.6 0.11 2.4E-06 55.6 2.5 21 216-236 1-21 (198)
458 TIGR03305 alt_F1F0_F1_bet alte 91.6 0.38 8.3E-06 56.9 7.0 88 215-303 139-241 (449)
459 COG0194 Gmk Guanylate kinase [ 91.6 0.2 4.4E-06 50.6 4.0 23 215-237 5-27 (191)
460 TIGR02322 phosphon_PhnN phosph 91.5 0.14 3E-06 53.8 3.1 23 215-237 2-24 (179)
461 cd01134 V_A-ATPase_A V/A-type 91.5 0.88 1.9E-05 51.6 9.3 47 215-265 158-205 (369)
462 CHL00206 ycf2 Ycf2; Provisiona 91.5 1.1 2.3E-05 61.2 11.5 26 213-238 1629-1654(2281)
463 PRK00131 aroK shikimate kinase 91.4 0.14 3.1E-06 53.5 3.1 24 214-237 4-27 (175)
464 PF00625 Guanylate_kin: Guanyl 91.4 0.2 4.3E-06 52.8 4.0 38 214-253 2-39 (183)
465 PRK08927 fliI flagellum-specif 91.3 0.51 1.1E-05 55.8 7.7 86 214-303 158-257 (442)
466 TIGR01359 UMP_CMP_kin_fam UMP- 91.3 0.13 2.7E-06 54.4 2.5 21 216-236 1-21 (183)
467 TIGR01313 therm_gnt_kin carboh 91.3 0.67 1.5E-05 47.7 7.8 21 217-237 1-21 (163)
468 PRK00279 adk adenylate kinase; 91.2 0.61 1.3E-05 50.6 7.8 21 216-236 2-22 (215)
469 PF13504 LRR_7: Leucine rich r 91.2 0.13 2.9E-06 29.7 1.4 17 600-616 1-17 (17)
470 TIGR01420 pilT_fam pilus retra 91.2 0.3 6.5E-06 57.1 5.7 111 215-337 123-233 (343)
471 TIGR01425 SRP54_euk signal rec 91.2 0.85 1.8E-05 53.9 9.3 24 213-236 99-122 (429)
472 TIGR03498 FliI_clade3 flagella 91.2 0.62 1.4E-05 55.1 8.3 85 215-303 141-239 (418)
473 KOG0729 26S proteasome regulat 91.2 1.4 3.1E-05 46.5 9.7 55 188-244 178-239 (435)
474 TIGR03522 GldA_ABC_ATP gliding 91.2 0.91 2E-05 52.1 9.6 23 215-237 29-51 (301)
475 PRK09580 sufC cysteine desulfu 91.2 0.91 2E-05 50.7 9.4 23 215-237 28-50 (248)
476 PF03205 MobB: Molybdopterin g 91.2 0.23 5.1E-06 49.2 4.1 39 215-254 1-39 (140)
477 TIGR00764 lon_rel lon-related 91.2 0.4 8.8E-06 60.2 7.1 75 187-271 18-92 (608)
478 PF03969 AFG1_ATPase: AFG1-lik 91.1 0.46 9.9E-06 55.4 7.0 102 212-333 60-166 (362)
479 TIGR03771 anch_rpt_ABC anchore 91.1 1.1 2.4E-05 48.9 9.8 23 215-237 7-29 (223)
480 TIGR03263 guanyl_kin guanylate 91.0 0.17 3.8E-06 53.2 3.2 22 215-236 2-23 (180)
481 PRK08149 ATP synthase SpaL; Va 91.0 0.71 1.5E-05 54.6 8.4 85 215-303 152-250 (428)
482 cd00227 CPT Chloramphenicol (C 91.0 0.16 3.5E-06 53.0 2.9 23 215-237 3-25 (175)
483 PRK03846 adenylylsulfate kinas 91.0 0.2 4.4E-06 53.5 3.7 24 213-236 23-46 (198)
484 cd02029 PRK_like Phosphoribulo 90.9 0.59 1.3E-05 50.9 7.0 77 216-294 1-84 (277)
485 PRK13947 shikimate kinase; Pro 90.9 0.16 3.4E-06 53.0 2.8 21 216-236 3-23 (171)
486 COG4639 Predicted kinase [Gene 90.9 0.23 5E-06 48.3 3.5 23 214-236 2-24 (168)
487 PRK05922 type III secretion sy 90.9 0.53 1.1E-05 55.6 7.3 85 215-303 158-256 (434)
488 PRK10416 signal recognition pa 90.9 0.74 1.6E-05 52.7 8.3 25 213-237 113-137 (318)
489 cd00071 GMPK Guanosine monopho 90.9 0.18 3.9E-06 50.0 3.0 22 216-237 1-22 (137)
490 COG0529 CysC Adenylylsulfate k 90.8 0.23 4.9E-06 49.5 3.5 24 213-236 22-45 (197)
491 PRK06217 hypothetical protein; 90.8 0.16 3.6E-06 53.4 2.8 22 216-237 3-24 (183)
492 cd01129 PulE-GspE PulE/GspE Th 90.8 0.48 1E-05 52.9 6.6 81 215-306 81-161 (264)
493 PRK13949 shikimate kinase; Pro 90.8 0.18 3.8E-06 52.1 2.9 22 216-237 3-24 (169)
494 PRK06793 fliI flagellum-specif 90.7 0.95 2.1E-05 53.6 9.1 123 214-340 156-292 (432)
495 PF03193 DUF258: Protein of un 90.7 0.34 7.4E-06 48.7 4.8 35 194-237 24-58 (161)
496 cd00820 PEPCK_HprK Phosphoenol 90.7 0.23 5.1E-06 45.9 3.2 21 215-235 16-36 (107)
497 PF01078 Mg_chelatase: Magnesi 90.7 0.39 8.4E-06 50.2 5.2 42 187-236 3-44 (206)
498 PRK12339 2-phosphoglycerate ki 90.6 0.21 4.7E-06 52.7 3.4 24 214-237 3-26 (197)
499 cd01132 F1_ATPase_alpha F1 ATP 90.6 0.52 1.1E-05 51.8 6.4 83 215-303 70-170 (274)
500 PRK07276 DNA polymerase III su 90.6 6.1 0.00013 44.4 14.9 69 292-361 102-172 (290)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-85 Score=816.27 Aligned_cols=642 Identities=30% Similarity=0.441 Sum_probs=512.0
Q ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHhhhcCCCCCc
Q 000427 24 GIRLFARQEPIQADLKKWKNMLVVIKAVLADAEEKK-TDQSVKLWLGELQNLAFDVEDLLDEFQTEAFRRKFLLGNRDPA 102 (1521)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~-~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~ 102 (1521)
+..++....|+++.+..|++.|..++.+++||++++ ....+..|.+.+++++|++||.++.|..+....+..+.-
T Consensus 16 l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l---- 91 (889)
T KOG4658|consen 16 LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLL---- 91 (889)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----
Confidence 334456667889999999999999999999999988 777889999999999999999999999887765432200
Q ss_pred cccCCCCCccccccccccccccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcCCccccCCCCc--cccCCcccc
Q 000427 103 AALDQPSSSRTRTSKFRKLIPTCCTTFTPQSIQFDYAMMSKIKEINGRFQDIVTQKDSLGLNVSSGGRT--TKDRQRRET 180 (1521)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 180 (1521)
.+ .....+.. |. ..++++.+..+..+.+++..+.+.+..++......... .......++
T Consensus 92 ---------~~-~~~~~~~~--c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~ 152 (889)
T KOG4658|consen 92 ---------ST-RSVERQRL--CL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVET 152 (889)
T ss_pred ---------hh-hHHHHHHH--hh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhccc
Confidence 00 00011111 11 13456667777777777777777766666443211111 111122234
Q ss_pred ccccccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc-cccccceeEEEEeCCCCCHH
Q 000427 181 TSLVKEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQ-VLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 181 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~ 259 (1521)
.+...... ||.++.++++++.|.+.+ ..+++|+||||+||||||++++|+.. ++.+|+.++||.||+.++..
T Consensus 153 ~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 153 RPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTR 225 (889)
T ss_pred CCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHH
Confidence 44455555 999999999999998764 28999999999999999999999987 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHH
Q 000427 260 RLTKTILTSIVADQNV-DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 338 (1521)
+++++|++.++..... .....++++..+.+.|+.|||+||+||||++ .+|+.+..++|....||||++|||++.|+.
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 9999999999874432 3334578899999999999999999999998 789999999999989999999999999999
Q ss_pred h-hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHHHhcc
Q 000427 339 I-MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVLSSK 417 (1521)
Q Consensus 339 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 417 (1521)
. +++...++++.|+++|||+||++.+|.... ...+.++++|++|+++|+|+|||++++|+.|+.|++.++|+++.+..
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l 382 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVL 382 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccc
Confidence 8 788889999999999999999999976532 34455899999999999999999999999999999999999999876
Q ss_pred ccc----CcccccCchhHHHHhHhcCChhhHHHHhHhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHHHHHH
Q 000427 418 IWE----LPEERCGIIPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRKIFKE 493 (1521)
Q Consensus 418 ~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~ 493 (1521)
.+. .+...+.|+++|++||+.||+++|.||+|||+||+||.|+++.||.+|+||||+.+.+.+..+++.|++|+.+
T Consensus 383 ~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~ 462 (889)
T KOG4658|consen 383 KSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEE 462 (889)
T ss_pred cccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHH
Confidence 554 2333568999999999999999999999999999999999999999999999999877789999999999999
Q ss_pred HHhCCCccccC--CCCCcEEEehhHHHHHHHhhc-----cceEEeeccc--ccccccccCCCccEEEEEccccccccccc
Q 000427 494 LHSRSFFQQSS--NDASRFVMHDLISDLAQWAAG-----EIYFTMEYTS--EVNKQQSFSKNLRHLSYICGEYDGVKRFE 564 (1521)
Q Consensus 494 L~~~~l~~~~~--~~~~~~~mHdli~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~r~ls~~~~~~~~~~~~~ 564 (1521)
||+++|++... +...+|+|||+|||+|.|+++ ++...+..+. ........+..+|+++++...... ..
T Consensus 463 LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~ 539 (889)
T KOG4658|consen 463 LVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IA 539 (889)
T ss_pred HHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---cc
Confidence 99999999865 356789999999999999999 5554444321 001122233578999998765432 23
Q ss_pred ccccCCccceecccccccccCcccccccccccc-ccCceeEEEEcCcc-ccccCccccCCcccceeeccCCcccccccch
Q 000427 565 DLYDIQHLRTFLPVMLINSSRGYLARSILPKLF-KLQRLRVFSLRGYH-IYELPDSIGDLRYLRYLNLSGTRIITLPESV 642 (1521)
Q Consensus 565 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i 642 (1521)
....++.++||+...... ....++..|| .++.||||||++|. +.++|++|++|.|||||+|+++.|..+|.++
T Consensus 540 ~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred CCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence 344566899998765421 1234556666 89999999999876 7899999999999999999999999999999
Q ss_pred hccccccEEecCCccchhhccccccccCCCceecccCCCCcccccCCCCCCCcccccCceeecCC
Q 000427 643 NTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLNNSYTGSLEEMPLGFGKLTCLQTLCNFVVGKD 707 (1521)
Q Consensus 643 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 707 (1521)
++|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecc
Confidence 999999999999987777777767779999999997654 2222223556666666655555433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-61 Score=647.05 Aligned_cols=435 Identities=22% Similarity=0.320 Sum_probs=303.2
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe---CCC-------
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCV---SDD------- 255 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~------- 255 (1521)
...+|||+++++++..+|... .+.+++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 346899999999999888432 34689999999999999999999998 57788988887642 111
Q ss_pred ----CC-HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEE
Q 000427 256 ----FD-VIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVT 330 (1521)
Q Consensus 256 ----~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 330 (1521)
+. ...++++++.++........... ..+++.++++|+||||||||+. +.|+.+.....+.++||+||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 13455566665544332122222 3567778999999999999876 7788888766667889999999
Q ss_pred cccHHHHHhhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHH
Q 000427 331 TRNQEVAKIMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEW 410 (1521)
Q Consensus 331 tR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w 410 (1521)
||+++++..++..++|+++.+++++||+||+++||+.. .+++++++++++|+++|+|+||||+++|++|+++ +.++|
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W 407 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDW 407 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHH
Confidence 99999998887788999999999999999999999764 3456789999999999999999999999999985 68999
Q ss_pred HHHHhcccccCcccccCchhHHHHhHhcCCh-hhHHHHhHhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHH
Q 000427 411 EDVLSSKIWELPEERCGIIPALAVSYYYLSA-PLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRK 489 (1521)
Q Consensus 411 ~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~ 489 (1521)
+.++.+..+.. ...|.++|++||+.|++ ..|.||+++|+|+.++.+ ..+..|.|.+.... +.
T Consensus 408 ~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~ 470 (1153)
T PLN03210 408 MDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NI 470 (1153)
T ss_pred HHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hh
Confidence 99998765433 24699999999999986 599999999999988755 34677887765432 22
Q ss_pred HHHHHHhCCCccccCCCCCcEEEehhHHHHHHHhhccceE-------Eeecc--cccccccccCCCccEEEEEccccccc
Q 000427 490 IFKELHSRSFFQQSSNDASRFVMHDLISDLAQWAAGEIYF-------TMEYT--SEVNKQQSFSKNLRHLSYICGEYDGV 560 (1521)
Q Consensus 490 ~~~~L~~~~l~~~~~~~~~~~~mHdli~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~ 560 (1521)
.++.|+++||++... .++.|||++|+||++++.++.. ..... ...-......+.++++++.......
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~- 546 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE- 546 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce-
Confidence 388999999998754 4699999999999999876521 00000 0000000111223333332111100
Q ss_pred ccccccccCCccceecccccccccCccccccccc-cccccCceeEEEEcCccc-------cccCccccCCc-ccceeecc
Q 000427 561 KRFEDLYDIQHLRTFLPVMLINSSRGYLARSILP-KLFKLQRLRVFSLRGYHI-------YELPDSIGDLR-YLRYLNLS 631 (1521)
Q Consensus 561 ~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i-------~~lp~~i~~L~-~Lr~L~Ls 631 (1521)
..+.. .|..+++|+.|.+..+.. ..+|..+..++ +||+|++.
T Consensus 547 -----------------------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 547 -----------------------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred -----------------------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 01111 122566666666644321 13455555553 46666666
Q ss_pred CCcccccccchhccccccEEecCCccchhhccccccccCCCceecccCCCCccccc
Q 000427 632 GTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLNNSYTGSLEEMP 687 (1521)
Q Consensus 632 ~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 687 (1521)
++.+..+|..+ ...+|+.|++.+| .+..+|.++..+++|+.|+++++..+..+|
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCC
Confidence 66666666655 3566666666665 456666666666666666666554333333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-41 Score=390.93 Aligned_cols=278 Identities=36% Similarity=0.618 Sum_probs=225.8
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhc
Q 000427 192 REIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVA 271 (1521)
Q Consensus 192 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 271 (1521)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++.+|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 468999999999999999999999977788999999999999999999999999999987
Q ss_pred CCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHhhCC-CCceeC
Q 000427 272 DQNV--DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIMGT-VPAYQL 348 (1521)
Q Consensus 272 ~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 348 (1521)
.... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7431 4567788999999999999999999999987 6898888888877789999999999998876654 678999
Q ss_pred CCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHHHhcccccCc---ccc
Q 000427 349 KKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVLSSKIWELP---EER 425 (1521)
Q Consensus 349 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 425 (1521)
++|+.+||++||.+.++... ...++.+++.+++|+++|+|+||||+++|++|+.+.+.++|+.++++..+... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999986544 22345556789999999999999999999999766577899998876444332 234
Q ss_pred cCchhHHHHhHhcCChhhHHHHhHhcccCCCcccChHHHHHHHHHcCCccC
Q 000427 426 CGIIPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDH 476 (1521)
Q Consensus 426 ~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~ 476 (1521)
..+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+|+||+..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 668999999999999999999999999999999999999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-40 Score=448.59 Aligned_cols=268 Identities=17% Similarity=0.196 Sum_probs=174.9
Q ss_pred cccceeEeecCCCccccCCcccCCCCCcEEEEecCCCCccCCC-CCCCCcccEEEeccCCCCCCCCcccccCCCCCccEE
Q 000427 1042 SRLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPE-VALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEIL 1120 (1521)
Q Consensus 1042 ~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~L 1120 (1521)
++|++|++++|.+.+.+|..+.++++|+.|++++|.+...+|. +..+++|+.|++++|.+...+|..+. .+++|+.|
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--KHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--CCCCCcEE
Confidence 4566777777777667777777788888888888877666554 55667777777777776656665443 45666666
Q ss_pred EEecCCCccccccccCCCCCceEEEeCCCCCCccccccccccCCCCCCCccccceEEeecCCCcccccccCCCchhhhcc
Q 000427 1121 NIQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESL 1200 (1521)
Q Consensus 1121 ~L~~~~~l~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~l~~l 1200 (1521)
++++|.... .+| ..+
T Consensus 362 ~Ls~n~l~~-----~~p---------------------------------------------------------~~~--- 376 (968)
T PLN00113 362 DLSTNNLTG-----EIP---------------------------------------------------------EGL--- 376 (968)
T ss_pred ECCCCeeEe-----eCC---------------------------------------------------------hhH---
Confidence 666652100 000 000
Q ss_pred ccCCCCCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCC
Q 000427 1201 EVGNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTS 1280 (1521)
Q Consensus 1201 ~~~~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 1280 (1521)
... ++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..++.|+.|++++|.+.+.++..+..+++
T Consensus 377 --~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 377 --CSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred --hCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 011 46777777777777767777777777777777777777777777777777777777777777777666667777
Q ss_pred cceEeeccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceEEecC
Q 000427 1281 LEDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGG 1360 (1521)
Q Consensus 1281 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 1360 (1521)
|+.|++++|.+.+.+|..+ ..++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 7777777777776666544 346777777777777777776666777777777777777777776666666666666654
Q ss_pred -----CCCCcccCCCCcccceeeeccc
Q 000427 1361 -----ELPSLEEDGLPTKIQSLHIRGN 1382 (1521)
Q Consensus 1361 -----~~~~~~~~~~~~~L~~L~l~~n 1382 (1521)
.+|. .+..+++|++|++++|
T Consensus 533 N~l~~~~p~--~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 533 NQLSGQIPA--SFSEMPVLSQLDLSQN 557 (968)
T ss_pred CcccccCCh--hHhCcccCCEEECCCC
Confidence 1121 2334445555555555
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-39 Score=436.60 Aligned_cols=501 Identities=20% Similarity=0.254 Sum_probs=326.9
Q ss_pred cccccccccCceeEEEEcCcccc-ccCcccc-CCcccceeeccCCccc-ccccchhccccccEEecCCccchhhcccccc
Q 000427 591 SILPKLFKLQRLRVFSLRGYHIY-ELPDSIG-DLRYLRYLNLSGTRII-TLPESVNTLYNLHTLLLEGCLRLKKLCADMG 667 (1521)
Q Consensus 591 ~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~Ls~~~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 667 (1521)
..++.+..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|++. .+|. +.+++|++|+|++|.....+|..++
T Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHh
Confidence 34445558888888888888876 6776654 8888888888888876 4553 5678888888888865567788888
Q ss_pred ccCCCceecccCCCCcccccCCCCCCCcccccCceeecCCCCCCchhcccccccCceeEEcccCCCCChhhhHHhhcCCC
Q 000427 668 NLIKLHYLNNSYTGSLEEMPLGFGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLNGK 747 (1521)
Q Consensus 668 ~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 747 (1521)
++++|++|++++|.....+|..++++++|++|...... + ....+..+..+
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~------------------------l------~~~~p~~l~~l 211 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ------------------------L------VGQIPRELGQM 211 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC------------------------C------cCcCChHHcCc
Confidence 88888888888887445677777777777776321110 0 00011122333
Q ss_pred CCCceEEEeecCCCCCCCchhhhhHHHHhccCCCCCCCceEEEeccCCCCCCcccCcCCCCCccEEEeecCCCCCCCC-C
Q 000427 748 KNLKVLRFRWTRSTDGLSSREAETEKDVLDMLKPHENLEQICIGGYGGKEFPTWLGDSLFSNLATLDFQDCGVCTTLP-S 826 (1521)
Q Consensus 748 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~ 826 (1521)
++|+.|++.+|... ..+|.++.. +++|++|++++|.+.+.+| .
T Consensus 212 ~~L~~L~L~~n~l~----------------------------------~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 212 KSLKWIYLGYNNLS----------------------------------GEIPYEIGG--LTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred CCccEEECcCCccC----------------------------------CcCChhHhc--CCCCCEEECcCceeccccChh
Confidence 34444444333221 134444443 5666666666666655555 4
Q ss_pred CCCCCCcCeEEEcCCCCceeeCccccCCCCCCCCCCccEEeccCCccccccccccCCCCCCCCCcccEEeeCCCcCcccc
Q 000427 827 VGQLPSLKHLEVSGMSRVKSLGSEFYGNDSPIPFPCLETLCFEDLQEWEDWIPLRSDQGVEGFPKLRELRISRCSKLQGT 906 (1521)
Q Consensus 827 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 906 (1521)
++++++|+.|++++|.....++.. ...+++|++|++++| .+.+.
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~-----------------------------------l~~l~~L~~L~Ls~n-~l~~~ 299 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPS-----------------------------------IFSLQKLISLDLSDN-SLSGE 299 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchh-----------------------------------HhhccCcCEEECcCC-eeccC
Confidence 666666666666655322221111 233556666666663 34434
Q ss_pred CCCCCCCccEEEEccCCCccccCCCCCcceEEEEcCCCCceeeccccccCCCCccccccccccccccCCCCCCCCCccee
Q 000427 907 LPECLPALEMLVIGGCEELSVSVTSLPALCKLEINGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRLPKLEKL 986 (1521)
Q Consensus 907 lp~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 986 (1521)
+|.. +..+++|+.|++.+|.. .+.+|.
T Consensus 300 ~p~~------------------~~~l~~L~~L~l~~n~~---------------------------~~~~~~-------- 326 (968)
T PLN00113 300 IPEL------------------VIQLQNLEILHLFSNNF---------------------------TGKIPV-------- 326 (968)
T ss_pred CChh------------------HcCCCCCcEEECCCCcc---------------------------CCcCCh--------
Confidence 4432 12233333333333321 111110
Q ss_pred eeccccCcchhhccchhhhhcCCCccEEecCCCCCcccchhhhhHHHHHHHhhhccccceeEeecCCCccccCCcccCCC
Q 000427 987 GINNIKNETYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSSRLEYLELNRCEGLVKLPQSSFSLS 1066 (1521)
Q Consensus 987 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~l~~~~~~l~ 1066 (1521)
.+..+++|+.|++++|.-...++. .....++|+.|++++|.+.+.+|..+..++
T Consensus 327 -----------------~~~~l~~L~~L~L~~n~l~~~~p~---------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 327 -----------------ALTSLPRLQVLQLWSNKFSGEIPK---------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred -----------------hHhcCCCCCEEECcCCCCcCcCCh---------HHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 012223333333333221111110 011125677777777777777777777777
Q ss_pred CCcEEEEecCCCCccCCC-CCCCCcccEEEeccCCCCCCCCcccccCCCCCccEEEEecCCCccccccccCCCCCceEEE
Q 000427 1067 SLREIEIYNCSSLVSFPE-VALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEILNIQYCCSLTYIAAVQLPSSLKKLKI 1145 (1521)
Q Consensus 1067 ~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~i 1145 (1521)
+|+.|++++|.+...+|. +..+++|+.|++++|.+....|..+. .+++|+.|++++|..... .+
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~-----~~-------- 445 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGR-----IN-------- 445 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh--cCCCCCEEECcCCcccCc-----cC--------
Confidence 888888888877666664 56677788888888777666665554 677777777777621100 00
Q ss_pred eCCCCCCccccccccccCCCCCCCccccceEEeecCCCcccccccCCCchhhhccccCCCCCCccEEEeccCCCchhhhh
Q 000427 1146 WRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESLEVGNLPPSLKSLDVYRCSKLESIAE 1225 (1521)
Q Consensus 1146 ~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~l~~l~~~~~p~~L~~L~L~~n~~~~~~~~ 1225 (1521)
. ....+ ++|+.|++++|++.+.+|.
T Consensus 446 -------------------------------------------------~-----~~~~l-~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 446 -------------------------------------------------S-----RKWDM-PSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred -------------------------------------------------h-----hhccC-CCCcEEECcCceeeeecCc
Confidence 0 00111 5899999999998887776
Q ss_pred hcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCc
Q 000427 1226 RLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQL 1305 (1521)
Q Consensus 1226 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 1305 (1521)
.+ ..++|+.|++++|++.+..|..+.++++|+.|+|++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+..+++|
T Consensus 471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred cc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 55 46889999999999998888888899999999999999999999999999999999999999999899999999999
Q ss_pred ceeecccCCCcccCCCCCCCccccceeecccccccccccc
Q 000427 1306 REISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPK 1345 (1521)
Q Consensus 1306 ~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~ 1345 (1521)
++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999889998888889999999999999888885
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.4e-29 Score=278.38 Aligned_cols=358 Identities=14% Similarity=0.178 Sum_probs=255.1
Q ss_pred ccccceeEeecCCCccccCCcccCCCCCcEEEEecCCCCccCCCCCCCCc-ccEEEeccCCCCCCCCcccccCCCCCccE
Q 000427 1041 SSRLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSK-LKEIQIGHCDALKSLPEAWMCDTHSSLEI 1119 (1521)
Q Consensus 1041 ~~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-L~~L~l~~n~~l~~~~~~~~~~~~~~L~~ 1119 (1521)
++.-+.|++++|.+...-+..|.++++|+.+++.+|.+ +.+|.++.... |+.|++.+|.+...-.+... .++.|++
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~--~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNLISSVTSEELS--ALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcccccccccceeEEeeeccccccccHHHHH--hHhhhhh
Confidence 45667899999999877788889999999999999855 57888777655 99999999987665555443 6899999
Q ss_pred EEEecCCCccccccccCCCCCceEEEeCCCCCCccccccccccCCCCCCCccccceEEeecCCCcccccccCCCchhhhc
Q 000427 1120 LNIQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLES 1199 (1521)
Q Consensus 1120 L~L~~~~~l~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~l~~ 1199 (1521)
|||+.| .+..++...+|..
T Consensus 154 lDLSrN-~is~i~~~sfp~~------------------------------------------------------------ 172 (873)
T KOG4194|consen 154 LDLSRN-LISEIPKPSFPAK------------------------------------------------------------ 172 (873)
T ss_pred hhhhhc-hhhcccCCCCCCC------------------------------------------------------------
Confidence 999987 3444443333321
Q ss_pred cccCCCCCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCC
Q 000427 1200 LEVGNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNT 1279 (1521)
Q Consensus 1200 l~~~~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 1279 (1521)
.++++|+|++|.++..-...|.++.+|-.|.|+.|+++...+..|.++++|+.|+|..|++...-.-.|++++
T Consensus 173 -------~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 173 -------VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred -------CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 3677777777777665556667777777777777777766666777777777777777776554445677777
Q ss_pred CcceEeeccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceEEec
Q 000427 1280 SLEDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIG 1359 (1521)
Q Consensus 1280 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 1359 (1521)
+|+.|.|..|.+...--+.|..+.++++|+|..|.+...-..++.+++.|+.|++++|.+...-++++...++|++|+|+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 77777777777766655667777777777777776665555566677777777777777766666666666777777777
Q ss_pred C-CCCCcc--cCCCCcccceeeeccccchhhhhhhccccccccCccceEEeccccCCCccCcccccccCCCCC----CCc
Q 000427 1360 G-ELPSLE--EDGLPTKIQSLHIRGNMEIWKSMVERGRGFHRFSSMRHLEIGGCYDDMVSFPLEDKRLGTALP----LPA 1432 (1521)
Q Consensus 1360 ~-~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~l~~l~l~~n~l~~~~~----~~~ 1432 (1521)
. .+..++ .+.-+..|++|+|++| .++++..-.+.+ ..+|+.||+.+|.+++.++ .+.
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~N---------------si~~l~e~af~~-lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHN---------------SIDHLAEGAFVG-LSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred ccccccCChhHHHHHHHhhhhccccc---------------chHHHHhhHHHH-hhhhhhhcCcCCeEEEEEecchhhhc
Confidence 4 333322 2334667777777777 455555555555 3677788888888776543 577
Q ss_pred cccceecccccc--ccccc-ccCCCCCccCceecccCCCCCCCCCCCC-CCcccceec
Q 000427 1433 SLTSLSILLFSN--LERLP-SSIVDLQNLTELRLHGCPKLKYFPEKGL-PSSLLQLQI 1486 (1521)
Q Consensus 1433 ~l~~L~~l~l~~--l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~~~-~~sL~~L~i 1486 (1521)
.|++|+.|.+.+ +.+|| ..+..+.+|+.|||.+| -|.++-+..+ |..|++|.+
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVM 446 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhh
Confidence 889999998876 66899 68999999999999996 4777765544 457777764
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=9.8e-31 Score=277.12 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=96.4
Q ss_pred EEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeeccccc
Q 000427 1212 LDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECEN 1291 (1521)
Q Consensus 1212 L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 1291 (1521)
+.+++| ..+.+|..++.+++|..|+|++|.+ ..+|..++.+..|++|++++|++.. .|..+..+..|+.+-.++|++
T Consensus 417 l~lsnn-~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 417 LVLSNN-KISFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHhhcC-ccccchHHHHhhhcceeeecccchh-hhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccc
Confidence 444444 4467788888888899999888744 4678778888888999998887654 566666667777777777888
Q ss_pred cccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccc
Q 000427 1292 LKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRL 1340 (1521)
Q Consensus 1292 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~ 1340 (1521)
....|..+.++.+|.+||+.+|.+ ..+|..+.+|++|++|++.||++.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 777777788888888888888855 566778888888888888888885
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2e-29 Score=295.28 Aligned_cols=265 Identities=19% Similarity=0.213 Sum_probs=183.5
Q ss_pred ccccceeEeecCCCccccCCcccCCCCCcEEEEecCCCCccCC-CCCCCCcccEEEeccCCCCCCCCcccccCCCCCccE
Q 000427 1041 SSRLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFP-EVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEI 1119 (1521)
Q Consensus 1041 ~~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~ 1119 (1521)
+.+|++++++.+.+. .+|+.+..+.+|+.+.+.+|.+. .+| .....++|+.|.+.+|.. ..+|.... .+.+|++
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel-~yip~~le--~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL-EYIPPFLE--GLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh-hhCCCccc--ccceeee
Confidence 467777777777765 46677777788888888777663 344 345567777777777763 33333322 5677788
Q ss_pred EEEecCCCccccccccCC---CCCceEEEeCCCCCCccccccccccCCCCCCCccccceEEeecCCCcccccccCCCchh
Q 000427 1120 LNIQYCCSLTYIAAVQLP---SSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPAT 1196 (1521)
Q Consensus 1120 L~L~~~~~l~~~~~~~~~---~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~ 1196 (1521)
|+|..| ++..++...+. .++..|... |..+ +..+
T Consensus 315 LdL~~N-~L~~lp~~~l~v~~~~l~~ln~s-~n~l---------------------------~~lp-------------- 351 (1081)
T KOG0618|consen 315 LDLQSN-NLPSLPDNFLAVLNASLNTLNVS-SNKL---------------------------STLP-------------- 351 (1081)
T ss_pred eeehhc-cccccchHHHhhhhHHHHHHhhh-hccc---------------------------cccc--------------
Confidence 887776 23333221100 001111100 0000 0000
Q ss_pred hhccccCCCCCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhc
Q 000427 1197 LESLEVGNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLD 1276 (1521)
Q Consensus 1197 l~~l~~~~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 1276 (1521)
... ....+.|+.|++.+|.+++.....+.++.+|+.|+|++|++.......+.+++.|++|+||+|++.. +|..+.
T Consensus 352 --~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva 427 (1081)
T KOG0618|consen 352 --SYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVA 427 (1081)
T ss_pred --ccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHH
Confidence 000 1111589999999999998888889999999999999999886666678899999999999999875 568899
Q ss_pred CCCCcceEeeccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceE
Q 000427 1277 NNTSLEDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQEL 1356 (1521)
Q Consensus 1277 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 1356 (1521)
++..|++|...+|.+.. +| .+.++++|+.+|++.|.+....-..-.+.++|++||++||......-..|..+..+...
T Consensus 428 ~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQM 505 (1081)
T ss_pred hhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhe
Confidence 99999999999999876 66 88999999999999998876443344455899999999999654444566666666666
Q ss_pred Eec
Q 000427 1357 RIG 1359 (1521)
Q Consensus 1357 ~l~ 1359 (1521)
++.
T Consensus 506 ~i~ 508 (1081)
T KOG0618|consen 506 DIT 508 (1081)
T ss_pred ecc
Confidence 654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=5.2e-26 Score=252.19 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhh---hhhhcCCCCcce
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESI---AERLDNNTSLED 1283 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~---~~~~~~l~~L~~ 1283 (1521)
++|++|+|++|++...-+..|..+..|++|+|++|.+...-...|..+++|++|||++|.++..+ ...|.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 34555555555555444444555555555555555554444444455555555555555544333 223445555555
Q ss_pred EeeccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeec
Q 000427 1284 IYISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCI 1334 (1521)
Q Consensus 1284 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l 1334 (1521)
|++.+|++..+...+|..+++|++|||.+|.+..+-|..|.++ .|++|-+
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 5555555544434445555555555555555555555555554 4554444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=9.5e-29 Score=262.15 Aligned_cols=106 Identities=28% Similarity=0.454 Sum_probs=91.2
Q ss_pred ccccccccCceeEEEEcCccccccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCC
Q 000427 592 ILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIK 671 (1521)
Q Consensus 592 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 671 (1521)
+.+++.++..|.||++++|.+.++|.+++.+..++.|+.++|++..+|+.++.+..|..|+.++| .+.++|.+|+.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhh
Confidence 34555688889999999999999999999999999999999999999999999999999999887 78888888999999
Q ss_pred CceecccCCCCcccccCCCCCCCccccc
Q 000427 672 LHYLNNSYTGSLEEMPLGFGKLTCLQTL 699 (1521)
Q Consensus 672 L~~L~l~~~~~~~~~p~~i~~L~~L~~L 699 (1521)
|..|+..+|+ +..+|.+++.+.+|..|
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHh
Confidence 9999888887 88888888888777766
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-25 Score=261.70 Aligned_cols=261 Identities=20% Similarity=0.190 Sum_probs=181.2
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEee
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 1286 (1521)
++|+.|+.++|+++...+. ....+|+++++++|++.. +|+++..+.+|+.++..+|.+ ..+|..+...++|+.|++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHh
Confidence 5777888888877643322 224577888888877764 347777778888888888877 445666667778888888
Q ss_pred ccccccccccccCCCCCCcceeecccCCCcccCCCCCCC-c-cccceeeccccccccccccccCCCCccceEEecCC---
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLP-C-AKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGGE--- 1361 (1521)
Q Consensus 1287 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~-~-~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~--- 1361 (1521)
..|.+.. +|.....+++|++|+|..|.+ ..+|..+.. . .+|..|+.+.|++.......=.....|+.|++.|+
T Consensus 295 ~~nel~y-ip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELEY-IPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhh-CCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 8877655 556667778888888888754 455553332 2 23667777777664332222234567777777751
Q ss_pred CCCcccCCCCcccceeeeccccchhhhhhhccccccccCccceEEeccccCCCccCcccccccCCCCCCCccccceeccc
Q 000427 1362 LPSLEEDGLPTKIQSLHIRGNMEIWKSMVERGRGFHRFSSMRHLEIGGCYDDMVSFPLEDKRLGTALPLPASLTSLSILL 1441 (1521)
Q Consensus 1362 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~l~~l~l~~n~l~~~~~~~~~l~~L~~l~ 1441 (1521)
-..++.+.....|+.|+|++| ++..+..-.+.+ .+.|+.|++|+|+++..+.....+..|+++.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyN---------------rL~~fpas~~~k-le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYN---------------RLNSFPASKLRK-LEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred ccchhhhccccceeeeeeccc---------------ccccCCHHHHhc-hHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 222344667788999999999 344444434444 2668888999999998887788899999999
Q ss_pred ccc--cccccccCCCCCccCceecccCCCCCCCC-CCCCC-CcccceeccCChh
Q 000427 1442 FSN--LERLPSSIVDLQNLTELRLHGCPKLKYFP-EKGLP-SSLLQLQIWRCPL 1491 (1521)
Q Consensus 1442 l~~--l~~lp~~~~~l~~L~~L~ls~c~~l~~lp-~~~~~-~sL~~L~i~~C~~ 1491 (1521)
+.+ +...| .+.++++|+.+|||.| .|+.+. +...| +.|++|++++.+.
T Consensus 437 ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 876 55788 8999999999999974 566443 23567 8999999999874
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.1e-25 Score=245.85 Aligned_cols=360 Identities=14% Similarity=0.174 Sum_probs=209.6
Q ss_pred cccceeEeecCCCc-cccCCcccCCCCCcEEEEecCCCCccCCCCCCCCcccEEEeccCCCCCCCCcccccCCCCCccEE
Q 000427 1042 SRLEYLELNRCEGL-VKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEIL 1120 (1521)
Q Consensus 1042 ~~L~~L~Ls~~~~~-~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~L 1120 (1521)
+-.+-+++++|.+. ...|.....+++++.|.|....+.....+++.+.+|+.|.+++|+..+...+ . ..+|.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-L--s~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-L--SDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-h--ccchhhHHH
Confidence 34556677777776 3567777777777777777765443322466677777777777775443322 2 156677777
Q ss_pred EEecCCCccccccccCCCCCceEEEeCCCCCCccccccccccCCCCCCCccccceEEeecCCCcccccccCCCchhhhcc
Q 000427 1121 NIQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESL 1200 (1521)
Q Consensus 1121 ~L~~~~~l~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~l~~l 1200 (1521)
.++.|. ++ ...+| ..+-.+
T Consensus 84 ~~R~N~-LK---nsGiP---------------------------------------------------------~diF~l 102 (1255)
T KOG0444|consen 84 IVRDNN-LK---NSGIP---------------------------------------------------------TDIFRL 102 (1255)
T ss_pred hhhccc-cc---cCCCC---------------------------------------------------------chhccc
Confidence 766652 11 11111 111111
Q ss_pred ccCCCCCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCC
Q 000427 1201 EVGNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTS 1280 (1521)
Q Consensus 1201 ~~~~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 1280 (1521)
..|+.||||+|++. .+|..+...+++-.|+||+|++.++.-+.|.+++.|-.||||+|++. .+|+.+..+..
T Consensus 103 ------~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 103 ------KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM 174 (1255)
T ss_pred ------ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh
Confidence 35667777777763 35666666777777777777766555555667777777777777653 34455666777
Q ss_pred cceEeeccccccccccccCCCCCCcceeecccCCCc-ccCCCCCCCccccceeeccccccccccccccCCCCccceEEec
Q 000427 1281 LEDIYISECENLKILPSGLHNLHQLREISVERCGNL-VSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIG 1359 (1521)
Q Consensus 1281 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 1359 (1521)
|++|+|++|++...--..+..+++|+.|++++-+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+.++++|+.|+||
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence 777777777765432233445556666666665432 356666666777777777777663 566777777777777777
Q ss_pred C-CCCCccc-CCCCcccceeeeccccchhhhhhhccccccccCccceEEeccccCCCccCcccccccC--CCCCCCcccc
Q 000427 1360 G-ELPSLEE-DGLPTKIQSLHIRGNMEIWKSMVERGRGFHRFSSMRHLEIGGCYDDMVSFPLEDKRLG--TALPLPASLT 1435 (1521)
Q Consensus 1360 ~-~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~l~~l~l~~n~l~--~~~~~~~~l~ 1435 (1521)
| .|..+.. .+.-.+|++|++|.|. +...+..+..++ .|+.|.+.+|+++ |++.-...|.
T Consensus 254 ~N~iteL~~~~~~W~~lEtLNlSrNQ-----Lt~LP~avcKL~------------kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 254 GNKITELNMTEGEWENLETLNLSRNQ-----LTVLPDAVCKLT------------KLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred cCceeeeeccHHHHhhhhhhccccch-----hccchHHHhhhH------------HHHHHHhccCcccccCCccchhhhh
Confidence 6 3332211 1233567777777772 111111122222 3334444445543 3334445566
Q ss_pred ceecccccc--cccccccCCCCCccCceecccCCCCCCCCCC-CCCCcccceeccCChhH
Q 000427 1436 SLSILLFSN--LERLPSSIVDLQNLTELRLHGCPKLKYFPEK-GLPSSLLQLQIWRCPLI 1492 (1521)
Q Consensus 1436 ~L~~l~l~~--l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-~~~~sL~~L~i~~C~~l 1492 (1521)
+|+++...| ++-+|+++..|..|+.|.|++ +.+-.+|+. .+.+.|+.|++.+.|+|
T Consensus 317 ~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 666666554 445666777777777777765 345556654 45566677777666654
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.3e-24 Score=241.87 Aligned_cols=372 Identities=18% Similarity=0.240 Sum_probs=232.7
Q ss_pred cCceeEEEEcCcccc--ccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCCCceec
Q 000427 599 LQRLRVFSLRGYHIY--ELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLN 676 (1521)
Q Consensus 599 l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 676 (1521)
++..|-.|+++|.++ .+|..+..++.+++|.|..+++..+|+.++.|.+|++|.+++| .+..+..+++.|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 455677788888876 5688888888888888888888888888888888888888887 6677777788888888888
Q ss_pred ccCCCC-cccccCCCCCCCcccccCceeecCCCCCCchhcccccccCceeEEcccCCCCChhhhHHhhcCCCCCCceEEE
Q 000427 677 NSYTGS-LEEMPLGFGKLTCLQTLCNFVVGKDSGSGIRELKLLTHLRGTLNISKLENVKDIGDAKEAQLNGKKNLKVLRF 755 (1521)
Q Consensus 677 l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 755 (1521)
+..|+. -..+|..|-+|..|.+| ++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~l------------------------------------------------------DL 110 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTIL------------------------------------------------------DL 110 (1255)
T ss_pred hhccccccCCCCchhcccccceee------------------------------------------------------ec
Confidence 877751 12456666555555544 22
Q ss_pred eecCCCCCCCchhhhhHHHHhccCCCCCCCceEEEeccCCCCCCcccCcCCCCCccEEEeecCCCCCCCCCCCCCCCcCe
Q 000427 756 RWTRSTDGLSSREAETEKDVLDMLKPHENLEQICIGGYGGKEFPTWLGDSLFSNLATLDFQDCGVCTTLPSVGQLPSLKH 835 (1521)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 835 (1521)
+.|.. ..+...+....++-.|+++.|.+..+|..++-. +..|-.|+|++|.+....|....|.+|+.
T Consensus 111 ShNqL------------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin-LtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 111 SHNQL------------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN-LTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred chhhh------------hhcchhhhhhcCcEEEEcccCccccCCchHHHh-hHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 22211 012333444556667777777778888766432 56677788888877655556777888888
Q ss_pred EEEcCCCCceeeCccccCCCCCCCCCCccEEeccCCccccccccccCCCCCCCCCcccEEeeCCCcCccccCCCCCCCcc
Q 000427 836 LEVSGMSRVKSLGSEFYGNDSPIPFPCLETLCFEDLQEWEDWIPLRSDQGVEGFPKLRELRISRCSKLQGTLPECLPALE 915 (1521)
Q Consensus 836 L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~ 915 (1521)
|.|++|+.... .|+ . ..+|.+|+.|.+++.+.-...+|.
T Consensus 178 L~Ls~NPL~hf---------------QLr-----Q---------------LPsmtsL~vLhms~TqRTl~N~Pt------ 216 (1255)
T KOG0444|consen 178 LKLSNNPLNHF---------------QLR-----Q---------------LPSMTSLSVLHMSNTQRTLDNIPT------ 216 (1255)
T ss_pred hhcCCChhhHH---------------HHh-----c---------------CccchhhhhhhcccccchhhcCCC------
Confidence 88887642110 000 0 122344444444442211101110
Q ss_pred EEEEccCCCccccCCCCCcceEEEEcCCCCceeeccccccCCCCccccccccccccccCCCCCCCCCcceeeeccccCcc
Q 000427 916 MLVIGGCEELSVSVTSLPALCKLEINGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRLPKLEKLGINNIKNET 995 (1521)
Q Consensus 916 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 995 (1521)
T Consensus 217 -------------------------------------------------------------------------------- 216 (1255)
T KOG0444|consen 217 -------------------------------------------------------------------------------- 216 (1255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccchhhhhcCCCccEEecCCCCCcccchhhhhHHHHHHHhhhccccceeEeecCCCccccCCcccCCCCCcEEEEec
Q 000427 996 YIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSSRLEYLELNRCEGLVKLPQSSFSLSSLREIEIYN 1075 (1521)
Q Consensus 996 ~l~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~L~~ 1075 (1521)
.|.. +.+|..+++|.|++. .+|..+.++++|+.|+|++
T Consensus 217 -------------------------sld~----------------l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 217 -------------------------SLDD----------------LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred -------------------------chhh----------------hhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence 0111 145667777777654 6788888888888888888
Q ss_pred CCCCccCCCCCCCCcccEEEeccCCCCCCCCcccccCCCCCccEEEEecCCCccccccccCCCCCceEEEeCCCCCCccc
Q 000427 1076 CSSLVSFPEVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEILNIQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLT 1155 (1521)
Q Consensus 1076 n~~~~~~~~~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~i~~c~~L~~l~ 1155 (1521)
|.+...--....-.+|++|+++.|+ +..+|.+.. .++.|+.|.+.+|. +
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avc--KL~kL~kLy~n~Nk-L--------------------------- 303 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVC--KLTKLTKLYANNNK-L--------------------------- 303 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccch-hccchHHHh--hhHHHHHHHhccCc-c---------------------------
Confidence 8765432223344667777777776 556666655 56666666665552 0
Q ss_pred cccccccCCCCCCCccccceEEeecCCCcccccccCCCchhhhccccCCCCCCccEEEeccCCCchhhhhhcCCCCCccE
Q 000427 1156 VDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESLEVGNLPPSLKSLDVYRCSKLESIAERLDNNTSLET 1235 (1521)
Q Consensus 1156 ~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~l~~l~~~~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1235 (1521)
...++|+.|..+ .+|+++..++|.+ +.+|++++.|..|+.
T Consensus 304 ---------------------------------~FeGiPSGIGKL------~~Levf~aanN~L-ElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 304 ---------------------------------TFEGIPSGIGKL------IQLEVFHAANNKL-ELVPEGLCRCVKLQK 343 (1255)
T ss_pred ---------------------------------cccCCccchhhh------hhhHHHHhhcccc-ccCchhhhhhHHHHH
Confidence 001222222222 3666666666554 667777777778888
Q ss_pred EEeecCCCCcccCCCCCCccccceeeecccCCchhhhh
Q 000427 1236 IRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAE 1273 (1521)
Q Consensus 1236 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 1273 (1521)
|.|+.|.+. .+|+++.-++.|+.||+..|.-...+|.
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 888777765 4577777777777777777776655543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.6e-20 Score=252.41 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=17.9
Q ss_pred cccccccccCCCCCccCceecccCCCCCCCC
Q 000427 1443 SNLERLPSSIVDLQNLTELRLHGCPKLKYFP 1473 (1521)
Q Consensus 1443 ~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp 1473 (1521)
+++..+|..+.++++|+.|++++|++++.++
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCccccccc
Confidence 3444555555566666666666666665443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=5.6e-17 Score=173.53 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=42.9
Q ss_pred CCCCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeeccc
Q 000427 1204 NLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMC 1265 (1521)
Q Consensus 1204 ~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n 1265 (1521)
.+|...++|++.+|.+.. +|.. .+.+| .+|+++|++...-...|.++++|.+|.|++|
T Consensus 441 ~iP~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 441 GIPVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 345678888898888855 4443 46677 8888888887666667778888888888775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=9.9e-15 Score=180.47 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=69.5
Q ss_pred CCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEe
Q 000427 1206 PPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIY 1285 (1521)
Q Consensus 1206 p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 1285 (1521)
|++|+.|+|++|++.+ +|.. .++|+.|++++|++.+ +|.. .++|+.|++++|.+.+ +|. ..++|+.|+
T Consensus 341 p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~---l~s~L~~Ld 408 (788)
T PRK15387 341 PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV---LPSELKELM 408 (788)
T ss_pred ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCC---cccCCCEEE
Confidence 3466666666666643 3321 2456666666666553 3432 2456666666666654 222 124566666
Q ss_pred eccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeecccccccccccccc
Q 000427 1286 ISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGL 1347 (1521)
Q Consensus 1286 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l 1347 (1521)
+++|.+.+ +|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+..+
T Consensus 409 LS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 409 VSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 66666554 3432 235566666666543 456666666666666666666665554433
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=4.1e-14 Score=175.08 Aligned_cols=92 Identities=27% Similarity=0.304 Sum_probs=58.5
Q ss_pred cccceeEeecCCCccccCCcccCCCCCcEEEEecCCCCccCCCCCCCCcccEEEeccCCCCCCCCcccccCCCCCccEEE
Q 000427 1042 SRLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEILN 1121 (1521)
Q Consensus 1042 ~~L~~L~Ls~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~L~ 1121 (1521)
..-..|+++++.+. .+|..+. ++|+.|++.+|.+. .+|. .+++|++|++++|.+. .+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~--lp~~Lk~LdLs~N~Lt-sLP~-----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLT-SLPV-----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC--CCCCCcEEEecCCccC-cccC-----cccccceee
Confidence 34557788887665 5676554 47888888887654 4554 3678888888887644 4443 246778888
Q ss_pred EecCCCccccccccCCCCCceEEEeCC
Q 000427 1122 IQYCCSLTYIAAVQLPSSLKKLKIWRC 1148 (1521)
Q Consensus 1122 L~~~~~l~~~~~~~~~~~L~~L~i~~c 1148 (1521)
+++|. ++.++. +|.+|+.|.+.++
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N 292 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGN 292 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCC
Confidence 87773 444443 4556666665554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2e-13 Score=170.69 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=73.2
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEee
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 1286 (1521)
++|+.|+|++|.+. .+|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|++... |..+ .++|+.|++
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~L 311 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNV 311 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHh
Confidence 46667777776664 3444442 466777777666653 444332 3666677776666542 2222 135666666
Q ss_pred ccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceEEecC
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGG 1360 (1521)
Q Consensus 1287 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 1360 (1521)
++|.+.. +|..+ .++|++|++++|.+.+ +|..+. ++|+.|++++|++. .+|..+. ++|+.|++++
T Consensus 312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~ 376 (754)
T PRK15370 312 QSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSR 376 (754)
T ss_pred cCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCC
Confidence 6666654 33322 2466666666665433 454332 46666666666654 3443331 3455555543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.8e-13 Score=171.06 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEee
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 1286 (1521)
++|+.|++++|.+.. +|..+ .++|++|++++|.+.+ +|..+. ++|+.|++++|++.. +|..+ .++|++|+|
T Consensus 304 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdL 374 (754)
T PRK15370 304 SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDV 374 (754)
T ss_pred hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEEC
Confidence 345555555555543 23222 2455555555555443 333221 455555555555542 23222 245555555
Q ss_pred ccccccccccccCCCCCCcceeecccCCCcccCCCCC----CCccccceeeccccccc
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVSFPEGG----LPCAKVTKLCIRWCKRL 1340 (1521)
Q Consensus 1287 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~----~~~~~L~~L~l~~n~~~ 1340 (1521)
++|.+.. +|..+. .+|+.|++++|.+. .+|..+ ..++++..|++.+|++.
T Consensus 375 s~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 375 SRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5555543 333222 24555555555443 333322 12345555555555553
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=7.9e-15 Score=138.38 Aligned_cols=85 Identities=29% Similarity=0.460 Sum_probs=46.5
Q ss_pred ccccCceeEEEEcCccccccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCCCcee
Q 000427 596 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYL 675 (1521)
Q Consensus 596 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 675 (1521)
+|.+.++..|.|++|.++.+|..|..|.+|++|++++|+|+++|.+|+.|++|++|+++-| .+..+|.+|+.++.|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 3444455555555555555555555555555555555555555555555555555555544 455555555555555555
Q ss_pred cccCCC
Q 000427 676 NNSYTG 681 (1521)
Q Consensus 676 ~l~~~~ 681 (1521)
|+.+|+
T Consensus 108 dltynn 113 (264)
T KOG0617|consen 108 DLTYNN 113 (264)
T ss_pred hccccc
Confidence 555544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=4.8e-14 Score=151.35 Aligned_cols=136 Identities=15% Similarity=0.088 Sum_probs=120.4
Q ss_pred CCCCCCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecc-cCCchhhhhhhcCCCCc
Q 000427 1203 GNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQM-CGNLESIAERLDNNTSL 1281 (1521)
Q Consensus 1203 ~~~p~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L 1281 (1521)
.++|+...+|+|..|+|....+..|+.+++|+.||||+|.+..+-|.+|..+++|..|-+.+ |+|++.....|+++.+|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45778999999999999888889999999999999999999999999999999988888777 88998888999999999
Q ss_pred ceEeeccccccccccccCCCCCCcceeecccCCCcccCCC-CCCCccccceeecccccc
Q 000427 1282 EDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPE-GGLPCAKVTKLCIRWCKR 1339 (1521)
Q Consensus 1282 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~~ 1339 (1521)
+-|.+.-|.+.-.....|..+++|..|.+.+|.+. .++. .+..+.+++++.+..|++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 99999999988877788999999999999998664 4444 778888999999988884
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=6.6e-11 Score=160.11 Aligned_cols=293 Identities=16% Similarity=0.216 Sum_probs=181.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC-CCCCHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVS-DDFDVIRLTKTI 265 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i 265 (1521)
..+|-|+.-.+.+ ... ...+++.|+|++|.||||++.++... ++.++|+++. .+.++..+...+
T Consensus 14 ~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 3456666544444 221 24689999999999999999998852 2368999996 445667777777
Q ss_pred HHHhhcCCCC------------CcccHHHHHHHHHHHhC--CceEEEEEeCCCCcCccchh-hhcccccCCCCCcEEEEE
Q 000427 266 LTSIVADQNV------------DNLNLNSLQEKLNKQLS--GKKFLLVLDDVWNRNYDDWD-QLRRPFEVGAPGSKIIVT 330 (1521)
Q Consensus 266 ~~~~~~~~~~------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivT 330 (1521)
+..+...... ...+...+...+...+. +.+++|||||+...+..... .+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777522110 00122233333333332 67999999999654323333 333333444567789899
Q ss_pred cccHH---HHHhhCCCCceeCC----CCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCC
Q 000427 331 TRNQE---VAKIMGTVPAYQLK----KLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRG 403 (1521)
Q Consensus 331 tR~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 403 (1521)
||... ...........++. +|+.+|+.++|.... +.. . -.+.+.+|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~-~~~---~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL-SSP---I---EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc-CCC---C---CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99832 11111112244555 999999999997654 211 1 1355678999999999999999887754
Q ss_pred CCChhHHHHHHhcccccCcc-cccCchhHHHH-hHhcCChhhHHHHhHhcccCCCcccChHHHHHHHHHcCCccCCCCCC
Q 000427 404 NHDRSEWEDVLSSKIWELPE-ERCGIIPALAV-SYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGN 481 (1521)
Q Consensus 404 ~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 481 (1521)
...... ... +.+.. ....+...+.- .|+.||++.+..+...|+++ .++.+.+-.. ..
T Consensus 232 ~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------ 290 (903)
T PRK04841 232 NNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------ 290 (903)
T ss_pred CCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------
Confidence 321100 001 11111 11234444433 47899999999999999986 3443322211 11
Q ss_pred ChhHHHHHHHHHHHhCCCccc-cCCCCCcEEEehhHHHHHHHhh
Q 000427 482 SCDDFGRKIFKELHSRSFFQQ-SSNDASRFVMHDLISDLAQWAA 524 (1521)
Q Consensus 482 ~~~~~~~~~~~~L~~~~l~~~-~~~~~~~~~mHdli~~~~~~~~ 524 (1521)
.+.+...+++|.+.+++.. .+++...|+.|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1234678999999999753 3334457899999999998764
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=5.7e-14 Score=132.67 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCcce
Q 000427 1228 DNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLRE 1307 (1521)
Q Consensus 1228 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 1307 (1521)
.++.+...|.||+|+++ .+|+.+..+.+|+.|++++|++.+ .|..+++++.|+.|+++-|++.. +|.+|+.+|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc-CccccCCCchhhh
Confidence 34445555556665554 334445556666666666655433 34445566666666666555433 5566666666666
Q ss_pred eecccCCCcc-cCCCCCCCccccceeeccccccccccccccCCCCccceEEecC----CCCCcccCCCCcccceeeeccc
Q 000427 1308 ISVERCGNLV-SFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGG----ELPSLEEDGLPTKIQSLHIRGN 1382 (1521)
Q Consensus 1308 L~l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~----~~~~~~~~~~~~~L~~L~l~~n 1382 (1521)
||+.+|.+.+ .+|..|..+..|+.|.++.|.+ +.+|..++++++||.|.+.+ .+|. ..+.++.|++|++.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpk--eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPK--EIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcH--HHHHHHHHHHHhcccc
Confidence 6666665543 4566666666666666666665 35556666666666666653 2222 3455566666666666
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=2.9e-13 Score=159.08 Aligned_cols=134 Identities=20% Similarity=0.138 Sum_probs=71.7
Q ss_pred CCccEEEeccCCCch----hhhhhcCCCCCccEEEeecCCCCcc----cCCCCCCccccceeeecccCCchhh----hhh
Q 000427 1207 PSLKSLDVYRCSKLE----SIAERLDNNTSLETIRISNCESPKI----LPSGLHNLRQLRKISIQMCGNLESI----AER 1274 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~----~~~ 1274 (1521)
++|++|++++|.+.+ .++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+.. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 467777777776652 2334455566677777777766532 2223334456677777766665332 334
Q ss_pred hcCCCCcceEeeccccccccccccC-----CCCCCcceeecccCCCcc----cCCCCCCCccccceeeccccccc
Q 000427 1275 LDNNTSLEDIYISECENLKILPSGL-----HNLHQLREISVERCGNLV----SFPEGGLPCAKVTKLCIRWCKRL 1340 (1521)
Q Consensus 1275 ~~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~----~~p~~~~~~~~L~~L~l~~n~~~ 1340 (1521)
+..+++|++|++++|.+.+.....+ ...+.|++|++++|.+.. .+...+..+++|+++++++|.+.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 4556666666666666554211111 123566666666665531 11222333456666666666665
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=4.1e-13 Score=157.83 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=81.9
Q ss_pred CccEEEeccCCCch----hhhhhcCCC-CCccEEEeecCCCCcc----cCCCCCCccccceeeecccCCchh----hhhh
Q 000427 1208 SLKSLDVYRCSKLE----SIAERLDNN-TSLETIRISNCESPKI----LPSGLHNLRQLRKISIQMCGNLES----IAER 1274 (1521)
Q Consensus 1208 ~L~~L~L~~n~~~~----~~~~~l~~l-~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~----~~~~ 1274 (1521)
+|++|++++|++.+ .+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 58888888887763 223445556 7788888888877632 233445556777888887777642 3344
Q ss_pred hcCCCCcceEeecccccccc----ccccCCCCCCcceeecccCCCcccCCCCCC-----Cccccceeeccccccc
Q 000427 1275 LDNNTSLEDIYISECENLKI----LPSGLHNLHQLREISVERCGNLVSFPEGGL-----PCAKVTKLCIRWCKRL 1340 (1521)
Q Consensus 1275 ~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~~~~L~~L~l~~n~~~ 1340 (1521)
+..+++|++|++++|.+.+. ++..+..+++|++|++++|++.......+. ..+.|+.|++++|.+.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 55566777788877776533 233455667777777777765431111111 2356777777777664
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=6.7e-10 Score=133.94 Aligned_cols=300 Identities=13% Similarity=0.090 Sum_probs=176.9
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
+..++||++|++++...+...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++.++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 4579999999999999985432 12334567899999999999999999854322222346677777777888999999
Q ss_pred HHHhhcC-CCCCcccHHHHHHHHHHHhC--CceEEEEEeCCCCcC----ccchhhhcccccCCCCCcE--EEEEcccHHH
Q 000427 266 LTSIVAD-QNVDNLNLNSLQEKLNKQLS--GKKFLLVLDDVWNRN----YDDWDQLRRPFEVGAPGSK--IIVTTRNQEV 336 (1521)
Q Consensus 266 ~~~~~~~-~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtR~~~v 336 (1521)
+.++... ......+.+++...+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ +|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 9998762 22123345666666766664 457899999996532 1122223222221 12333 5666665433
Q ss_pred HHhhC-------CCCceeCCCCChhhHHHHHHHhhhCC--CCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhh--C--C
Q 000427 337 AKIMG-------TVPAYQLKKLSDNDCLAVFVQHSLGT--RDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLL--R--G 403 (1521)
Q Consensus 337 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~--~ 403 (1521)
..... ....+.+++++.++..+++..++-.. ....++..++.+++......|..+.|+.++-.+. + .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 32211 12467999999999999998876321 1122333344444444444566777777664322 1 1
Q ss_pred -CC--ChhHHHHHHhcccccCcccccCchhHHHHhHhcCChhhHHHHhHhccc-CC-CcccChHHHHHH--HHHcCCccC
Q 000427 404 -NH--DRSEWEDVLSSKIWELPEERCGIIPALAVSYYYLSAPLKQCFAYCSLF-PK-DYEFEEEEIILL--WCASGFLDH 476 (1521)
Q Consensus 404 -~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~~--w~a~g~~~~ 476 (1521)
.. +.+....+++.. -.....-.+..||.+.|..+..++.. .. ...+...++... .+++.+-..
T Consensus 266 ~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred CCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 344555555432 11233456889999988776655432 21 133555555432 333222111
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCccc
Q 000427 477 KGSGNSCDDFGRKIFKELHSRSFFQQ 502 (1521)
Q Consensus 477 ~~~~~~~~~~~~~~~~~L~~~~l~~~ 502 (1521)
..-......|+++|...++|+.
T Consensus 336 ----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 ----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred ----cCcHHHHHHHHHHHHhcCCeEE
Confidence 0012345678999999999875
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=8.6e-12 Score=158.57 Aligned_cols=105 Identities=33% Similarity=0.428 Sum_probs=81.6
Q ss_pred ccCceeEEEEcCcc--ccccCc-cccCCcccceeeccCC-cccccccchhccccccEEecCCccchhhccccccccCCCc
Q 000427 598 KLQRLRVFSLRGYH--IYELPD-SIGDLRYLRYLNLSGT-RIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLH 673 (1521)
Q Consensus 598 ~l~~Lr~L~L~~~~--i~~lp~-~i~~L~~Lr~L~Ls~~-~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 673 (1521)
..+.|++|-+.+|. +..++. .|..+++||+|||++| .+.+||++|+.|.+||+|+++++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 44568888888886 666654 3677889999999876 45688988999999999999884 7888888899999999
Q ss_pred eecccCCCCcccccCCCCCCCcccccCcee
Q 000427 674 YLNNSYTGSLEEMPLGFGKLTCLQTLCNFV 703 (1521)
Q Consensus 674 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 703 (1521)
||++..+..+..+|..+..|++|++|..+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 998888875666655566688888885443
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.18 E-value=4.9e-09 Score=125.04 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=173.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-ccc---ceeEEEEeCCCCCHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL-DHF---NLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 262 (1521)
..++||++|+++|..++...- .+.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 479999999999999986532 12344678999999999999999999743211 111 145788888777888899
Q ss_pred HHHHHHhh---cCCCCCcccHHHHHHHHHHHhC--CceEEEEEeCCCCcCc---cchhhhcccc-cCCC--CCcEEEEEc
Q 000427 263 KTILTSIV---ADQNVDNLNLNSLQEKLNKQLS--GKKFLLVLDDVWNRNY---DDWDQLRRPF-EVGA--PGSKIIVTT 331 (1521)
Q Consensus 263 ~~i~~~~~---~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~---~~~~~l~~~l-~~~~--~gs~iivTt 331 (1521)
.+++.++. ........+..+....+.+.+. +++++||||+++.-.. +....+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999884 2222122334455555555553 5688999999965421 1112222221 1111 233455555
Q ss_pred ccHHHHHhhC-------CCCceeCCCCChhhHHHHHHHhhhC-CCCCCCChhHHHHHHHHHHhcCCChHHHHH-HHhhh-
Q 000427 332 RNQEVAKIMG-------TVPAYQLKKLSDNDCLAVFVQHSLG-TRDFSSHKSLEEIGKKIVTKCDGLPLAAQT-LGGLL- 401 (1521)
Q Consensus 332 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~PLai~~-~~~~l- 401 (1521)
.......... ....+.+++.+.++..+++..++-. .......++..+...+++....|.|-.+.. +-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443221111 1245889999999999999988631 111122333344555677777898854433 22111
Q ss_pred ---CCC---CChhHHHHHHhcccccCcccccCchhHHHHhHhcCChhhHHHHhHhccc--CCCcccChHHHHHHHH--Hc
Q 000427 402 ---RGN---HDRSEWEDVLSSKIWELPEERCGIIPALAVSYYYLSAPLKQCFAYCSLF--PKDYEFEEEEIILLWC--AS 471 (1521)
Q Consensus 402 ---~~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w~--a~ 471 (1521)
... -+.+..+.+.+.. -.....-++..||.+.|..+..++.. .++..+...++...+. ++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 111 1233333333321 11233456778999888666655422 1334466666666331 22
Q ss_pred CCccCCCCCCChhHHHHHHHHHHHhCCCcccc
Q 000427 472 GFLDHKGSGNSCDDFGRKIFKELHSRSFFQQS 503 (1521)
Q Consensus 472 g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 503 (1521)
.+- . ....+.....+++.|...|+++..
T Consensus 323 ~~~-~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIG-V---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcC-C---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111 1 112346678889999999999864
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=7e-09 Score=117.98 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=115.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH----H
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLN----K 289 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~----~ 289 (1521)
..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++.... ..+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 358899999999999999999985431 111 12333 33345777888889888865532 222222223332 2
Q ss_pred H-hCCceEEEEEeCCCCcCccchhhhccccc---CCCCCcEEEEEcccHHHHHhhC----------CCCceeCCCCChhh
Q 000427 290 Q-LSGKKFLLVLDDVWNRNYDDWDQLRRPFE---VGAPGSKIIVTTRNQEVAKIMG----------TVPAYQLKKLSDND 355 (1521)
Q Consensus 290 ~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 355 (1521)
. ..+++++||+||+|.-....++.+..... .......|++|.... ...... ....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 36788999999998865556666543222 122233455655432 222211 12357899999999
Q ss_pred HHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 000427 356 CLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLL 401 (1521)
Q Consensus 356 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 401 (1521)
..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764322111112234788999999999999999988776
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=2.7e-09 Score=119.03 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=99.7
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH---
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI--- 265 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 265 (1521)
|+||+.|+++|.+++.... .+.+.|+|+.|+|||+|++++.+.. ++.-..++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhh-HHHHHHHH
Confidence 7999999999999996542 4789999999999999999999843 2211134455444443221 22222
Q ss_pred -------HHHhhcCCC---------CCcccHHHHHHHHHHHh--CCceEEEEEeCCCCcCc--cc----hhhhcccccC-
Q 000427 266 -------LTSIVADQN---------VDNLNLNSLQEKLNKQL--SGKKFLLVLDDVWNRNY--DD----WDQLRRPFEV- 320 (1521)
Q Consensus 266 -------~~~~~~~~~---------~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~--~~----~~~l~~~l~~- 320 (1521)
.+.+..... ............+.+.+ .+++++||+||+..-.. .. ...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111211100 00111122222222222 23459999999954320 01 1122222222
Q ss_pred -CCCCcEEEEEcccHHHHHh--------hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000427 321 -GAPGSKIIVTTRNQEVAKI--------MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 321 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
......+|++.....+... .+....+.+++|+.+++++++...+-.. ..- +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1233345555544444433 1223459999999999999998865322 111 112455688999999999
Q ss_pred HHHHH
Q 000427 392 LAAQT 396 (1521)
Q Consensus 392 Lai~~ 396 (1521)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=1.5e-08 Score=117.25 Aligned_cols=276 Identities=16% Similarity=0.123 Sum_probs=151.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+|||++..++.+..++..... ....+..+.++|++|+|||+||+.+++.. ...+ ..+......... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCch-hHHHHH
Confidence 3689999999999998864321 22345668899999999999999999843 2222 112211111111 222223
Q ss_pred HHhhcCCCC-----CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHhh-
Q 000427 267 TSIVADQNV-----DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIM- 340 (1521)
Q Consensus 267 ~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~- 340 (1521)
..+....-. +... ....+.+...+.+.+..+|+|+.+.. ..| ...++ +.+-|..||+...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHH
Confidence 333221100 0111 12334556666667777777776433 222 11222 345566777764443221
Q ss_pred -CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHHHhcccc
Q 000427 341 -GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVLSSKIW 419 (1521)
Q Consensus 341 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 419 (1521)
.....+.+++++.++..+++.+.+.... ...+ .+.+..|++.|+|.|-.+..++..+. .........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLN-VEIE---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhC-CCcC---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCC
Confidence 1134579999999999999998874322 1112 35678899999999977655554321 111000000
Q ss_pred cCcc-cccCchhHHHHhHhcCChhhHHHHh-HhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHHHHH-HHHh
Q 000427 420 ELPE-ERCGIIPALAVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRKIFK-ELHS 496 (1521)
Q Consensus 420 ~~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~ 496 (1521)
.... .-......+...|..++.+.+..+. ..+.++.+ .+..+.+.... | . ....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~-~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------E-DADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------C-CcchHHHhhhHHHHH
Confidence 0000 0011222245567788888777666 55666543 45544443322 1 1 1234566677 6999
Q ss_pred CCCcccc
Q 000427 497 RSFFQQS 503 (1521)
Q Consensus 497 ~~l~~~~ 503 (1521)
++|++..
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999754
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=1.1e-08 Score=118.99 Aligned_cols=278 Identities=15% Similarity=0.122 Sum_probs=151.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+|+|++..++.+..++..... .....+.+.|+|++|+||||+|+.+++.. ...+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 4699999999999888754321 22345678899999999999999999843 2221 112211 112222233344
Q ss_pred HHhhcCCCCCcccH----HHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHhh--
Q 000427 267 TSIVADQNVDNLNL----NSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIM-- 340 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-- 340 (1521)
..+....-.-.++. ....+.+...+.+.+..+|+|+..+. . .+...++ +.+-|..|+|...+....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~--~---~~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA--R---SIRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc--c---ceeecCC---CceEEeecCCcccCCHHHHH
Confidence 43322110000111 12233445555666666777765332 1 1111111 245566777754332221
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHHHhccccc
Q 000427 341 GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVLSSKIWE 420 (1521)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 420 (1521)
.....+++++++.++..+++.+.+.... ... -.+.+..|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILG-VEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcC-CCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 1124689999999999999998874322 112 235688899999999965555544322 12111100 00
Q ss_pred Ccc-cccCchhHHHHhHhcCChhhHHHHh-HhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHHHHH-HHHhC
Q 000427 421 LPE-ERCGIIPALAVSYYYLSAPLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRKIFK-ELHSR 497 (1521)
Q Consensus 421 ~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~ 497 (1521)
... .-......+...|..|++..+..+. ....|+.+ .+..+.+.... . .. .+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~----~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EE----RDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CC----cchHHHHhhHHHHHc
Confidence 110 0012233445567788887777775 66677655 45655554433 1 11 233444555 79999
Q ss_pred CCccccC
Q 000427 498 SFFQQSS 504 (1521)
Q Consensus 498 ~l~~~~~ 504 (1521)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997543
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.90 E-value=1.3e-07 Score=114.06 Aligned_cols=301 Identities=13% Similarity=0.129 Sum_probs=164.2
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc---ccccc--eeEEEEeCCCCCHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV---LDHFN--LKAWTCVSDDFDVIR 260 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 260 (1521)
+..++|||+|+++|...|...-. +.....++.|+|++|+|||++++.|.+..+. ..... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35789999999999999865432 2233467889999999999999999874311 11111 356788877778889
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC---CceEEEEEeCCCCcCccchhhhcccccC-CCCCcEEEE--EcccH
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLS---GKKFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGSKIIV--TTRNQ 334 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~~ 334 (1521)
++..|++++............+....+...+. ....+||||+|..-....-+.+...+.+ ...+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999998855443233333344444544442 2245899999953221111223322221 223555544 33321
Q ss_pred H--------HHHhhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCC
Q 000427 335 E--------VAKIMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHD 406 (1521)
Q Consensus 335 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~ 406 (1521)
+ +...++ ...+..+|.+.++-.+++..++-.....-++..++-+|+.++..-|-.=.||.++-.+...+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 222222 2346779999999999999988533223344455555565555545555666655444432111
Q ss_pred ----hhHHHHHHhcccccCcccccCchhHHHHhHhcCChhhHHHHhHhcccCC---CcccChHHHHHHH--HHc--C-Cc
Q 000427 407 ----RSEWEDVLSSKIWELPEERCGIIPALAVSYYYLSAPLKQCFAYCSLFPK---DYEFEEEEIILLW--CAS--G-FL 474 (1521)
Q Consensus 407 ----~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~---~~~i~~~~li~~w--~a~--g-~~ 474 (1521)
.+.-+.+.+.. ....+.-....||.+.|-.+..+...-+ ...++..++.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 12222222110 0111233446788887765543332211 1134444444322 222 1 11
Q ss_pred cCCCCCCChhHHHHHHHHHHHhCCCccc
Q 000427 475 DHKGSGNSCDDFGRKIFKELHSRSFFQQ 502 (1521)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 502 (1521)
. ....-+ ...+++.+|...|+|..
T Consensus 1062 G---v~plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1062 G---MCSNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred C---CCCcHH-HHHHHHHHHHhcCeEEe
Confidence 1 111122 56777888888888765
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=6.8e-10 Score=115.02 Aligned_cols=131 Identities=14% Similarity=0.058 Sum_probs=105.4
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEee
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 1286 (1521)
.-|++|||++|.+.. +.++..-.|.++.|++|+|.+... ..+..+++|+.||||+|.++... ..-..+-+.++|.|
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence 479999999999854 556677789999999999998765 34888999999999999876532 33345778999999
Q ss_pred ccccccccccccCCCCCCcceeecccCCCccc-CCCCCCCccccceeecccccccccc
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVS-FPEGGLPCAKVTKLCIRWCKRLEAL 1343 (1521)
Q Consensus 1287 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~~~~~~ 1343 (1521)
++|.+-.. ++++.+.+|..||+++|++... --.++.++|.|+++.+.+|++.+..
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99987653 6788999999999999977432 1236788999999999999997543
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.89 E-value=1.1e-07 Score=114.41 Aligned_cols=291 Identities=18% Similarity=0.241 Sum_probs=186.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhhcCCCC
Q 000427 197 KDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-FDVIRLTKTILTSIVADQNV 275 (1521)
Q Consensus 197 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~ 275 (1521)
.++.+.|... .+.|.+.|..++|.|||||+.+.+. +. ..=..++|.+.... -++.+....++..+....+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 3455555433 3579999999999999999999975 11 12246899998765 57888888888888743321
Q ss_pred ------------CcccHHHHHHHHHHHhC--CceEEEEEeCCCCcCccchhh-hcccccCCCCCcEEEEEcccHHHH---
Q 000427 276 ------------DNLNLNSLQEKLNKQLS--GKKFLLVLDDVWNRNYDDWDQ-LRRPFEVGAPGSKIIVTTRNQEVA--- 337 (1521)
Q Consensus 276 ------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~--- 337 (1521)
...+...+...+...+. .++..+||||..-........ +...+...+.+-.+|||||+..-.
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 12233344444544443 468999999975443333333 444455667788999999985322
Q ss_pred HhhCCCCceeCC----CCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHH
Q 000427 338 KIMGTVPAYQLK----KLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDV 413 (1521)
Q Consensus 338 ~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 413 (1521)
+.--....+++. .++.+|+.++|.... + . +--+.-++.+.+..+|-+-|+..++=.++.+.+.+.-...
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-~--l----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRG-S--L----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcC-C--C----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 111111233333 578999999997664 1 1 1113457789999999999999999888844443332222
Q ss_pred HhcccccCcccccCchh-HHHHhHhcCChhhHHHHhHhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHHHHH
Q 000427 414 LSSKIWELPEERCGIIP-ALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRKIFK 492 (1521)
Q Consensus 414 l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~ 492 (1521)
+. +....+.. ...=-++.||+++|.-++.||+++. +. ++|+..- +-++.|..+++
T Consensus 250 Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L-------------tg~~ng~amLe 305 (894)
T COG2909 250 LS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL-------------TGEENGQAMLE 305 (894)
T ss_pred cc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH-------------hcCCcHHHHHH
Confidence 22 10011111 1122368899999999999999853 12 2333322 11345778899
Q ss_pred HHHhCCCcc-ccCCCCCcEEEehhHHHHHHHhhcc
Q 000427 493 ELHSRSFFQ-QSSNDASRFVMHDLISDLAQWAAGE 526 (1521)
Q Consensus 493 ~L~~~~l~~-~~~~~~~~~~mHdli~~~~~~~~~~ 526 (1521)
+|.+++|+- +-++....|+.|.+..||-+.....
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 999999885 4455677899999999998865443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.2e-10 Score=123.49 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=85.9
Q ss_pred CCccEEEeccCCCc-hhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhh-hhhhcCCCCcceE
Q 000427 1207 PSLKSLDVYRCSKL-ESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESI-AERLDNNTSLEDI 1284 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L 1284 (1521)
++|+.|.|+.|.+. ..+...+..+|+|+.|+|.+|............+..|++|||++|++.... ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 46777777777776 233445566777777777777533333333445667777788777766542 2345677777777
Q ss_pred eecccccccc-cccc-----CCCCCCcceeecccCCCccc-CCCCCCCccccceeeccccccccc
Q 000427 1285 YISECENLKI-LPSG-----LHNLHQLREISVERCGNLVS-FPEGGLPCAKVTKLCIRWCKRLEA 1342 (1521)
Q Consensus 1285 ~L~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~~~~~ 1342 (1521)
+++.|.+... .|.. ...+++|+.|++..|++..- .-..+..+++|+.|.+..|++...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 7777777654 2332 35678888888888876321 112344566777788778777543
No 37
>PF05729 NACHT: NACHT domain
Probab=98.83 E-value=1.6e-08 Score=105.78 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHH---HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDH----FNLKAWTCVSDDFDVI---RLTKTILTSIVADQNVDNLNLNSLQEKL 287 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~l 287 (1521)
|++.|+|.+|+||||+++.++.+...... +...+|+..+...... .+...+..+.... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHHH
Confidence 58899999999999999999875332222 4456677766554432 3333333333211 11111111111
Q ss_pred HHHhCCceEEEEEeCCCCcCccc-------hhh-hcccccC-CCCCcEEEEEcccHHH---HHhhCCCCceeCCCCChhh
Q 000427 288 NKQLSGKKFLLVLDDVWNRNYDD-------WDQ-LRRPFEV-GAPGSKIIVTTRNQEV---AKIMGTVPAYQLKKLSDND 355 (1521)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~~~~~-------~~~-l~~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 355 (1521)
.-+.++++||+|++.+-.... +.. +...+.. ..++.+++||+|.... .........+++.+|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 225789999999995532111 222 2223332 3578999999998666 3333444679999999999
Q ss_pred HHHHHHHhh
Q 000427 356 CLAVFVQHS 364 (1521)
Q Consensus 356 ~~~lf~~~~ 364 (1521)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997653
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=1.9e-09 Score=109.41 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=30.9
Q ss_pred CCccEEEeccCCCchhhhhhcC-CCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEe
Q 000427 1207 PSLKSLDVYRCSKLESIAERLD-NNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIY 1285 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 1285 (1521)
..+++|+|++|.+... +.+. .+.+|+.|++++|.+... +.+..++.|++|++++|.+....+.....+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3577777777777542 2344 466777777777777654 3466677777777777777654332223567777777
Q ss_pred ecccccccccc-ccCCCCCCcceeecccCCCc
Q 000427 1286 ISECENLKILP-SGLHNLHQLREISVERCGNL 1316 (1521)
Q Consensus 1286 L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 1316 (1521)
+++|++...-. ..+..+++|++|++.+||+.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777654211 23444555555555555543
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=2.4e-09 Score=108.70 Aligned_cols=130 Identities=17% Similarity=0.073 Sum_probs=51.3
Q ss_pred hcCCCCCccEEEeecCCCCcccCCCCC-CccccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCC
Q 000427 1226 RLDNNTSLETIRISNCESPKILPSGLH-NLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQ 1304 (1521)
Q Consensus 1226 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 1304 (1521)
.+.+..++++|+|++|.+... +.+. .+.+|+.|++++|.+... +.+..++.|++|++++|.+....+.....+|+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 355666899999999998765 3465 588999999999999865 35778999999999999998753322246899
Q ss_pred cceeecccCCCcccCC-CCCCCccccceeecccccccccc---ccccCCCCccceEEec
Q 000427 1305 LREISVERCGNLVSFP-EGGLPCAKVTKLCIRWCKRLEAL---PKGLHNLTSVQELRIG 1359 (1521)
Q Consensus 1305 L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~~~~~~---p~~l~~l~~L~~L~l~ 1359 (1521)
|++|++++|.+...-. ..+..+++|++|++.+||+...- ...+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999999998754211 24557899999999999997542 1146677888888654
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=1.9e-07 Score=120.10 Aligned_cols=310 Identities=15% Similarity=0.204 Sum_probs=176.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-ccccceeEEEEeCCCC---CHHHHHHH
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV-LDHFNLKAWTCVSDDF---DVIRLTKT 264 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~---~~~~~~~~ 264 (1521)
++||+.|++.|.+.+... ..+...++.+.|..|||||+|+++|.....- ++.|-...+-....+. ...+.+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 789999999999998665 3345679999999999999999999873211 1122111111111221 12334444
Q ss_pred HHHHhhcCCCC--------------------------------------C--cccHH-----HHHHHHHHHh-CCceEEE
Q 000427 265 ILTSIVADQNV--------------------------------------D--NLNLN-----SLQEKLNKQL-SGKKFLL 298 (1521)
Q Consensus 265 i~~~~~~~~~~--------------------------------------~--~~~~~-----~~~~~l~~~l-~~~~~Ll 298 (1521)
++.++...... + ..... ..+..+.... +.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 44444111100 0 00000 0122233333 3469999
Q ss_pred EEeCCCCcCccchhhhcccccCCC------CCcEEEEEcccH--HHHHhhCCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 000427 299 VLDDVWNRNYDDWDQLRRPFEVGA------PGSKIIVTTRNQ--EVAKIMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDF 370 (1521)
Q Consensus 299 VlDdv~~~~~~~~~~l~~~l~~~~------~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 370 (1521)
|+||+...+....+-+........ ...-.+.|.+.. .+.........+.|.||+..+...+..... +...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l-~~~~- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL-GCTK- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh-CCcc-
Confidence 999994433233322221111111 011123333332 222222344679999999999999997765 3322
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCC------CChhHHHHHHhcccccCcccccCchhHHHHhHhcCChhhH
Q 000427 371 SSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGN------HDRSEWEDVLSSKIWELPEERCGIIPALAVSYYYLSAPLK 444 (1521)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 444 (1521)
....+....|+++..|+|+-+..+-.++... .+...|..=..+ .... ...+.+...+..-.+.||...|
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~-~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGIL-ATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCc-hhhHHHHHHHHHHHhcCCHHHH
Confidence 2224667889999999999999999888864 223344322111 1111 1112255568888999999999
Q ss_pred HHHhHhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHHHHHHHHhCCCcccc-----CCCCCcE---EEehhH
Q 000427 445 QCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRKIFKELHSRSFFQQS-----SNDASRF---VMHDLI 516 (1521)
Q Consensus 445 ~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~-----~~~~~~~---~mHdli 516 (1521)
+.+-..|++. -.|+.+.|...|- ......+....+.|....++-.. ....... ..||.|
T Consensus 312 ~Vl~~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999995 4556666666552 13345666666666665555321 1111112 568888
Q ss_pred HHHHH
Q 000427 517 SDLAQ 521 (1521)
Q Consensus 517 ~~~~~ 521 (1521)
++.|-
T Consensus 379 qqaaY 383 (849)
T COG3899 379 QQAAY 383 (849)
T ss_pred HHHHh
Confidence 88775
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.5e-09 Score=119.20 Aligned_cols=133 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCccEEEeccCCCch--hhhhhcCCCCCccEEEeecCCCCcccCCCC-CCccccceeeecccCCchh-hhhhhcCCCCcc
Q 000427 1207 PSLKSLDVYRCSKLE--SIAERLDNNTSLETIRISNCESPKILPSGL-HNLRQLRKISIQMCGNLES-IAERLDNNTSLE 1282 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~ 1282 (1521)
|+++.|||+.|-+.. .+......+++|+.|+|+.|++.....+.. ..++.|+.|.|+.|+++.- +-.....+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 566777777665543 223445566677777777766543222211 1355666666666666532 223344566666
Q ss_pred eEeeccccccccccccCCCCCCcceeecccCCCcccC-CCCCCCccccceeecccccc
Q 000427 1283 DIYISECENLKILPSGLHNLHQLREISVERCGNLVSF-PEGGLPCAKVTKLCIRWCKR 1339 (1521)
Q Consensus 1283 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~~~~L~~L~l~~n~~ 1339 (1521)
.|+|.+|............+..|++|||++|+++..- -.....++.|+.|+++.|.+
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 6666666533322233344556666666666554321 01334455555555555554
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=1.8e-09 Score=122.28 Aligned_cols=106 Identities=26% Similarity=0.420 Sum_probs=95.5
Q ss_pred cccccccccCceeEEEEcCccccccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccC
Q 000427 591 SILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLI 670 (1521)
Q Consensus 591 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 670 (1521)
.+|..+..|..|..|.|..|.|..+|..+++|..|.||||+.|++..+|..++.|+ |+.|.+++| +++.+|.+|+.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccch
Confidence 45666677888899999999999999999999999999999999999999999886 899999987 8899999999999
Q ss_pred CCceecccCCCCcccccCCCCCCCccccc
Q 000427 671 KLHYLNNSYTGSLEEMPLGFGKLTCLQTL 699 (1521)
Q Consensus 671 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 699 (1521)
.|.+|+.+.|. +..+|..++.|++|+.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 99999999998 88999999999888887
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=4.6e-07 Score=98.89 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=97.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
+.+.|+|++|+|||+||+++++.. ......+.|+.+.... .... .+.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~----------------------~~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSP----------------------AVLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhH----------------------HHHhhcc-c
Confidence 578999999999999999999843 2223345666653110 0000 1111121 2
Q ss_pred eEEEEEeCCCCcC-ccchhh-hcccccC-CCCCcEEE-EEccc---------HHHHHhhCCCCceeCCCCChhhHHHHHH
Q 000427 295 KFLLVLDDVWNRN-YDDWDQ-LRRPFEV-GAPGSKII-VTTRN---------QEVAKIMGTVPAYQLKKLSDNDCLAVFV 361 (1521)
Q Consensus 295 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 361 (1521)
.-+||+||+|... ..+|+. +...+.. ...|..+| +|++. +++.+.+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 2489999998742 245653 3333322 12355554 45544 4666666667789999999999999999
Q ss_pred HhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 000427 362 QHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLL 401 (1521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 401 (1521)
++++..+- ..+ +++..-|++++.|..-++..+-..+
T Consensus 172 ~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98864331 112 4667789999998887766554444
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=3.7e-08 Score=123.93 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=87.1
Q ss_pred CccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeec
Q 000427 1208 SLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYIS 1287 (1521)
Q Consensus 1208 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 1287 (1521)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47778888888888888888888888888888888888888878888888888888888888888888888888888888
Q ss_pred cccccccccccCCCC-CCcceeecccCCCccc
Q 000427 1288 ECENLKILPSGLHNL-HQLREISVERCGNLVS 1318 (1521)
Q Consensus 1288 ~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~ 1318 (1521)
+|.+.+.+|..+..+ .++..+++.+|+.+..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 888887777766553 4566777777765443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=4.3e-08 Score=123.38 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=85.9
Q ss_pred CccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCcceeecc
Q 000427 1232 SLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLREISVE 1311 (1521)
Q Consensus 1232 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 1311 (1521)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+.++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCcccCCCCCCCc-cccceeecccccccc
Q 000427 1312 RCGNLVSFPEGGLPC-AKVTKLCIRWCKRLE 1341 (1521)
Q Consensus 1312 ~n~~~~~~p~~~~~~-~~L~~L~l~~n~~~~ 1341 (1521)
+|.+.+.+|..+... .++..+++.+|+...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 888877777765542 356677777776543
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=3.4e-08 Score=119.36 Aligned_cols=102 Identities=31% Similarity=0.430 Sum_probs=91.4
Q ss_pred ccccCceeEEEEcCccccccCccccCCc-ccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCCCce
Q 000427 596 LFKLQRLRVFSLRGYHIYELPDSIGDLR-YLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHY 674 (1521)
Q Consensus 596 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 674 (1521)
+..+..++.|++.++.+.++|...+.+. +|++|++++|++..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3466789999999999999999888885 999999999999999989999999999999998 88999988889999999
Q ss_pred ecccCCCCcccccCCCCCCCccccc
Q 000427 675 LNNSYTGSLEEMPLGFGKLTCLQTL 699 (1521)
Q Consensus 675 L~l~~~~~~~~~p~~i~~L~~L~~L 699 (1521)
|++++|. +..+|..++.+..|++|
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEEL 214 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhh
Confidence 9999998 89999877666667776
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=1.6e-06 Score=103.92 Aligned_cols=178 Identities=20% Similarity=0.251 Sum_probs=104.1
Q ss_pred ccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 188 KVYGREIEKKD---VVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 188 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
++||++..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++.......-.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHH
Confidence 57888877655 66766433 3457888999999999999999884 22222 222221111111122
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE--EcccHH--HH-H
Q 000427 265 ILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV--TTRNQE--VA-K 338 (1521)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~-~ 338 (1521)
+++ .... ...+++.+|++|+++.-.....+.+...+. .|..++| ||.+.. +. .
T Consensus 80 ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 80 VIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 222 1111 124578899999997765445555554443 2444444 344332 11 1
Q ss_pred hhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhh
Q 000427 339 IMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGL 400 (1521)
Q Consensus 339 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 400 (1521)
.......+.+.+++.++.++++.+.+....... ..--.+..+.|++.|+|.|..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 112235789999999999999987653211100 0122466778999999999876554433
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=8.3e-09 Score=110.65 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=92.9
Q ss_pred CCCccEEEeccCCCch----hhhhhcCCCCCccEEEeecCCCCcc----cCCCCCCccccceeeecccCCchh----hhh
Q 000427 1206 PPSLKSLDVYRCSKLE----SIAERLDNNTSLETIRISNCESPKI----LPSGLHNLRQLRKISIQMCGNLES----IAE 1273 (1521)
Q Consensus 1206 p~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~----~~~ 1273 (1521)
|+.|+++..++|.+-. .+...|...+.|+.+.++.|.+... +...|..++.|++|||..|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 4789999998888753 2345677788999999999876422 234567788888888888887653 345
Q ss_pred hhcCCCCcceEeeccccccccccc----cC-CCCCCcceeecccCCCccc----CCCCCCCccccceeecccccc
Q 000427 1274 RLDNNTSLEDIYISECENLKILPS----GL-HNLHQLREISVERCGNLVS----FPEGGLPCAKVTKLCIRWCKR 1339 (1521)
Q Consensus 1274 ~~~~l~~L~~L~L~~n~~~~~~~~----~l-~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~~ 1339 (1521)
.+..++.|++|++++|.+...-.. .+ ...|+|+.|.+.+|.+... +.......+.|..|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 677788888888888887654221 12 2367888888888876532 111223356788888888877
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=2.1e-08 Score=109.92 Aligned_cols=238 Identities=21% Similarity=0.333 Sum_probs=120.0
Q ss_pred hhhcCCCccEEecCCCCCcccchhhhhHHHHHHHhhhccccceeEeecCCCccc--cCCcccCCCCCcEEEEecCCCCcc
Q 000427 1004 LLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSSRLEYLELNRCEGLVK--LPQSSFSLSSLREIEIYNCSSLVS 1081 (1521)
Q Consensus 1004 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~L~~L~Ls~~~~~~~--l~~~~~~l~~L~~L~L~~n~~~~~ 1081 (1521)
+...++.|+++.+..|..++.... ..+.+.+++|++|+++.|+.... +...+.++..++.+.+.+|.-...
T Consensus 185 la~~C~~l~~l~L~~c~~iT~~~L-------k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l 257 (483)
T KOG4341|consen 185 LARYCRKLRHLNLHSCSSITDVSL-------KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL 257 (483)
T ss_pred HHHhcchhhhhhhcccchhHHHHH-------HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH
Confidence 344566677777777777665432 24555667888888888875432 222344566677776667643321
Q ss_pred C---CCCCCCCcccEEEeccCCCCCCCCcccccCCCCCccEEEEecCCCccccccc---cCCCCCceEEEeCCCCCCccc
Q 000427 1082 F---PEVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEILNIQYCCSLTYIAAV---QLPSSLKKLKIWRCDNIRTLT 1155 (1521)
Q Consensus 1082 ~---~~~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~---~~~~~L~~L~i~~c~~L~~l~ 1155 (1521)
- -.-....-+.++++.+|..+++.......-.+..|+.|..++|..+++.... +...+|+.|.+.+|.++....
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 0 0123345566667777766655442222234667777777777665544322 223344444444444332221
Q ss_pred cccccccCCCCCCCccccceEEeecCCCcccccccCCCchhhhccccCCCCCCccEEEeccCCCch--hhhhhcCCCCCc
Q 000427 1156 VDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESLEVGNLPPSLKSLDVYRCSKLE--SIAERLDNNTSL 1233 (1521)
Q Consensus 1156 ~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~l~~l~~~~~p~~L~~L~L~~n~~~~--~~~~~l~~l~~L 1233 (1521)
. . .++...+.|+.+++..|.... .+...-.+++.|
T Consensus 338 f-------------------------------------t------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 338 F-------------------------------------T------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred h-------------------------------------h------hhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 0 0 111112466666666665432 122223456667
Q ss_pred cEEEeecCCCCccc-----CCCCCCccccceeeecccCCch-hhhhhhcCCCCcceEeeccccc
Q 000427 1234 ETIRISNCESPKIL-----PSGLHNLRQLRKISIQMCGNLE-SIAERLDNNTSLEDIYISECEN 1291 (1521)
Q Consensus 1234 ~~L~Ls~n~~~~~~-----p~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~L~~n~~ 1291 (1521)
+.|.|++|...+.. ...-..+..|+.+.|++|+.+. ..-+.+..+++|+.+++-+|..
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 77777766654332 1112234445555555554332 2233344455555555554443
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.44 E-value=2.1e-06 Score=94.71 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=101.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhc
Q 000427 192 REIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVA 271 (1521)
Q Consensus 192 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 271 (1521)
.+..++.+.+++... ..+.+.|+|..|+|||++|+.+++.. .......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 344667777765322 34788999999999999999999743 22233455665533211 00
Q ss_pred CCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCcc-ch-hhhcccccC-CCCCcEEEEEcccH---------HHHHh
Q 000427 272 DQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYD-DW-DQLRRPFEV-GAPGSKIIVTTRNQ---------EVAKI 339 (1521)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~ 339 (1521)
. .+...+.+ .-+||+||++.-... .| +.+...+.. ...+.++|+||+.. .+...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 238999999654322 23 334443322 12345788888752 22223
Q ss_pred hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhh
Q 000427 340 MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGL 400 (1521)
Q Consensus 340 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 400 (1521)
+.....+++.+++.++...++...+-..+- ..+ .+..+.|++.++|.|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL-QLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 333457899999999999998876532221 111 355677888899999887766433
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.6e-07 Score=78.18 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=24.2
Q ss_pred cceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCcceeecccC
Q 000427 1257 LRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLREISVERC 1313 (1521)
Q Consensus 1257 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 1313 (1521)
|++|++++|++....+..|.++++|++|++++|.+....|..|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444443333334444444444444444444433344444444444444444
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=5.1e-09 Score=114.61 Aligned_cols=284 Identities=19% Similarity=0.259 Sum_probs=139.1
Q ss_pred CccEEEeecCCCCCCCC---CCCCCCCcCeEEEcCCCCceeeCccccCCCCCCCCCCccEEeccCCccccccccccCCCC
Q 000427 809 NLATLDFQDCGVCTTLP---SVGQLPSLKHLEVSGMSRVKSLGSEFYGNDSPIPFPCLETLCFEDLQEWEDWIPLRSDQG 885 (1521)
Q Consensus 809 ~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 885 (1521)
.|+.|.+++|.-...-+ .....|++++|.+.+|.+++...-.-. ....++|+.+.+..|..+++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl----a~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL----ARYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH----HHhcchhhhhhhcccchhHHHHHHHH---
Confidence 45566666665433322 234567777777777765544321111 12256666677766666654432211
Q ss_pred CCCCCcccEEeeCCCcCccc----cCCCCCCCccEEEEccCCCccc-----cCCCCCcceEEEEcCCCCceeeccccccC
Q 000427 886 VEGFPKLRELRISRCSKLQG----TLPECLPALEMLVIGGCEELSV-----SVTSLPALCKLEINGCKKVVWRSATDHLG 956 (1521)
Q Consensus 886 ~~~~~~L~~L~l~~c~~L~~----~lp~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 956 (1521)
...+++|++|+++.|+.+++ .+-.+...++++...+|..... .-...+-+.++++..|..++.....
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---- 287 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---- 287 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH----
Confidence 34578888888888887764 2223444455565556655431 1223344445555555433321110
Q ss_pred CCCccccccccccccccCCCCCCCCCcceeeeccccCcchhhccchhhhhcCCCccEEecCCCCCcccchhhhhHHHHHH
Q 000427 957 SQNSVVCRDASNQVFLAGPLKPRLPKLEKLGINNIKNETYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 1036 (1521)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 1036 (1521)
.+......|+.|..+++.+.+. .....+.++.++|+.+.+..|..+... .+..
T Consensus 288 ------------------~i~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~-------~ft~ 340 (483)
T KOG4341|consen 288 ------------------LIACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDR-------GFTM 340 (483)
T ss_pred ------------------HHhhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhh-------hhhh
Confidence 0011123445555555544322 112233445566666666666654432 2223
Q ss_pred HhhhccccceeEeecCCCccc--cCCcccCCCCCcEEEEecCCCCccCC------CCCCCCcccEEEeccCCCCCCCCcc
Q 000427 1037 LCELSSRLEYLELNRCEGLVK--LPQSSFSLSSLREIEIYNCSSLVSFP------EVALPSKLKEIQIGHCDALKSLPEA 1108 (1521)
Q Consensus 1037 l~~~~~~L~~L~Ls~~~~~~~--l~~~~~~l~~L~~L~L~~n~~~~~~~------~~~~~~~L~~L~l~~n~~l~~~~~~ 1108 (1521)
+...++.|+.+++..|..... +-..-.+++.|+.|.+++|...+... .......|..+.+++|+.+..-...
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 334455666666666654321 22223356666666666665544321 0123455666666666654443322
Q ss_pred cccCCCCCccEEEEecCCCcccc
Q 000427 1109 WMCDTHSSLEILNIQYCCSLTYI 1131 (1521)
Q Consensus 1109 ~~~~~~~~L~~L~L~~~~~l~~~ 1131 (1521)
+. ..+++|+.+++-+|..++.-
T Consensus 421 ~l-~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 421 HL-SICRNLERIELIDCQDVTKE 442 (483)
T ss_pred HH-hhCcccceeeeechhhhhhh
Confidence 22 24555666666555544433
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.2e-06 Score=96.63 Aligned_cols=176 Identities=23% Similarity=0.283 Sum_probs=104.9
Q ss_pred cccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 184 VKEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 184 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
+...+++|.+..+.++++ .+.+..+-.||++|+||||||+.++. .....| ..++...+-.+-++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 344556666666555443 23567778999999999999999998 344444 33333333333333
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE--EcccHHH---HH
Q 000427 264 TILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV--TTRNQEV---AK 338 (1521)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~ 338 (1521)
+++++.. +....+++.+|++|.|..-+..+-+.+ +|.-..|.-|+| ||-++.. ..
T Consensus 91 ~i~e~a~-----------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 91 EIIEEAR-----------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHH-----------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 3333211 122348899999999976543343333 455556776765 4554322 11
Q ss_pred hhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCC--Ch-hHHHHHHHHHHhcCCChHHHH
Q 000427 339 IMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSS--HK-SLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 339 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~g~PLai~ 395 (1521)
......++++++|+.+|-.+++.+.+......-. .. --+++...+++.++|---++-
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 1233468999999999999999884422111111 11 123466778899998775543
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.1e-07 Score=77.45 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=32.7
Q ss_pred CccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeecccc
Q 000427 1232 SLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECE 1290 (1521)
Q Consensus 1232 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 1290 (1521)
+|++|++++|++....+..|..+++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555555555555555555555555554
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.5e-08 Score=114.90 Aligned_cols=100 Identities=28% Similarity=0.271 Sum_probs=89.6
Q ss_pred ccCceeEEEEcCccccccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCCCceecc
Q 000427 598 KLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLNN 677 (1521)
Q Consensus 598 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 677 (1521)
.+..-...||+.|++.++|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 44455678999999999999999999999999999999999999999999999999997 7899999998886 899999
Q ss_pred cCCCCcccccCCCCCCCcccccC
Q 000427 678 SYTGSLEEMPLGFGKLTCLQTLC 700 (1521)
Q Consensus 678 ~~~~~~~~~p~~i~~L~~L~~L~ 700 (1521)
++|+ ++.+|.+|+-+..|..|.
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred ecCc-cccCCcccccchhHHHhh
Confidence 9888 999999999777777663
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=7.9e-06 Score=94.35 Aligned_cols=179 Identities=18% Similarity=0.251 Sum_probs=114.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCc----ccccccceeEEEEe-CCCCCHHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDK----QVLDHFNLKAWTCV-SDDFDVIRLT 262 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~ 262 (1521)
+++|-+..++.+..++..+. -.....++|+.|+||||+|+.+++.. ....|.|...|... +....+++ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 57898999999999985442 34677899999999999999988731 12345565555442 22222222 2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHH-Hhh-
Q 000427 263 KTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVA-KIM- 340 (1521)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~~- 340 (1521)
+++.+.+... -..+++-++|+|++..-+...++.+...+.....++.+|++|.+.+.. ...
T Consensus 79 r~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2233322211 112455567777775555567888888888777788888888765321 111
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 341 GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
.....+++.++++++....+.+.. .. .+ ++.++.++..++|.|.-+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~-~~----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKY-ND----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHh-cC----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 123579999999999988776543 11 11 234677899999998765433
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=9.9e-06 Score=95.21 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=109.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.......+. ..+...-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999998886532 246778999999999999999987421111110 00000000011111
Q ss_pred HHhhcC----CCCCcccHHHHHHHHHHH-----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHH
Q 000427 267 TSIVAD----QNVDNLNLNSLQEKLNKQ-----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEV 336 (1521)
Q Consensus 267 ~~~~~~----~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 336 (1521)
...... ........++..+ +.+. ..+++-++|+|++..-....++.+...+.......++|++|.+ ..+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 100000 0000011222111 1111 1245569999999766555677777666655556677776654 333
Q ss_pred HHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 337 AKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
.... +....+++.+++.++..+.+.+.+...+. .. -++.+..|++.++|.|-.+..
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i---~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DT---DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3222 22357999999999998888776633221 11 135677799999998865433
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=6.7e-08 Score=100.54 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=38.2
Q ss_pred cccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeec
Q 000427 1255 RQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCI 1334 (1521)
Q Consensus 1255 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l 1334 (1521)
..|+++|||+|.++. +.++..-.|.++.|++++|.+... ..+..+++|++||||+|.+.. +...-..+-+.++|.+
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 345555555555443 223344455555555555555443 224455555555555553322 1112223334555555
Q ss_pred ccccc
Q 000427 1335 RWCKR 1339 (1521)
Q Consensus 1335 ~~n~~ 1339 (1521)
++|.+
T Consensus 360 a~N~i 364 (490)
T KOG1259|consen 360 AQNKI 364 (490)
T ss_pred hhhhH
Confidence 55544
No 59
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=7.6e-07 Score=88.54 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=78.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccc---cccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVL---DHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (1521)
.+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+..+++.+++.... ...+.+++.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 4789999999999999999999843110 002456799998888999999999999997765 345666677777777
Q ss_pred hCCc-eEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEccc
Q 000427 291 LSGK-KFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 291 l~~~-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 333 (1521)
+... ..+||+|++..- ....++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7654 459999999543 3333344433332 567777777664
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.3e-06 Score=98.09 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=111.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..... .|+.. ...+.-..-+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCCC-CCCccCHHHHHHh
Confidence 468999999999999996542 24678899999999999999998732111 11110 0000000111111
Q ss_pred HHhh-----cCCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HH
Q 000427 267 TSIV-----ADQNVDNLNLNSLQEKLNK----QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EV 336 (1521)
Q Consensus 267 ~~~~-----~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 336 (1521)
..-. .... .....++..+.+.. -..+++-++|+|++..-+......+...+.....+.++|++|.+. .+
T Consensus 83 ~g~hpDviEIDAA-s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEIDAA-SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEeccc-ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 0000 0000 01122222222211 123566689999997665556666776665555566777777653 22
Q ss_pred HHh-hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 337 AKI-MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
... ......+++++++.++..+.+.+.+-..+... -.+....|++.++|.+..+..+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 211 12335799999999999988877663322111 1355677999999988655443
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=9.9e-06 Score=100.54 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=112.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccc-------------------ccee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDH-------------------FNLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 247 (1521)
.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++....... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999998886542 2355689999999999999999874321111 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcE
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSK 326 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (1521)
+++...... ...+.+++.+.+.. -..+++-++|||++..-.....+.+...+-......+
T Consensus 91 iEidAas~~-------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 91 IEVDAASRT-------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEecccccc-------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 111111000 11112222222221 1246677999999977666677777777765555666
Q ss_pred EEEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 327 IIVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 327 iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
+|++|.+ ..+...+ .....|++++++.++..+.+.+.+-..+ .. --.+.+..|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665554 4443221 2235799999999999998887653221 11 12356788999999999655444
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.32 E-value=7.8e-06 Score=96.56 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=108.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCCCH-HHHHH-
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFN-LKAWTCVSDDFDV-IRLTK- 263 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~- 263 (1521)
.+++|++..++.+..++... ..+.+.++|+.|+||||+|+.+++... ...+. ..+.+++++-.+. .....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46889999999999988543 234678999999999999999987421 11222 2234444321100 00000
Q ss_pred --HHHHHhhcCCCCCcccHHHHHHHHHHH-----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-H
Q 000427 264 --TILTSIVADQNVDNLNLNSLQEKLNKQ-----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-E 335 (1521)
Q Consensus 264 --~i~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~ 335 (1521)
.................+.....+... ..+.+-+||+||+..-.......+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000000001112222222211 12344589999995443333444555444444456777777543 2
Q ss_pred HHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 336 VAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 336 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
+.... .....+++.+++.++..+++.+.+...+- .. -.+.++.+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DY---DDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22221 22346888999999998888887633221 11 1356778899999987665443
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3.6e-05 Score=93.74 Aligned_cols=195 Identities=15% Similarity=0.197 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+.......++. ..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 468999999999999985432 2456679999999999999988773221111100 0011001111111
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHH-H
Q 000427 267 TS-----IVADQNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQE-V 336 (1521)
Q Consensus 267 ~~-----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v 336 (1521)
.. +..+.. .....+++.+.+... ..++.-++|||++..-+...|..+...+.....+.++|+||++.. +
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 00 000000 011122222222211 124455888999977666667888777766556778887777643 3
Q ss_pred HHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHH
Q 000427 337 AKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTLG 398 (1521)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 398 (1521)
...+ .-...+.+++++.++..+.+.+.+-..+ ... -.+..+.|++.++|..- |+..+-
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2221 1235799999999999998887653222 111 13567789999998664 554433
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=3e-06 Score=102.42 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=113.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|-+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999998898988886542 24567999999999999999998743222222223333221100 000000000
Q ss_pred HHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhhC-CC
Q 000427 267 TSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIMG-TV 343 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~-~~ 343 (1521)
..+............++.+.+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+...+. ..
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00010000011112222222221 12345668999999766556677777776655455565555543 33322222 23
Q ss_pred CceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 344 PAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 344 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
..+++.+++.++..+.+.+.+...+- .. -.+.+..|++.++|.+--+.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi-~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR-EA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 57999999999999999887643321 11 23567889999999996553
No 65
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=1.8e-06 Score=91.98 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=33.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQ 239 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 239 (1521)
+||||+++++++...+... .....+.+.|+|.+|+|||+|+++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999522 344569999999999999999999988543
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=98.29 E-value=5.2e-05 Score=92.95 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=138.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.++.++.+.+|+..... +...+.+.|+|++|+||||+|+.++++. .|+ .+-+++++..+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHH
Confidence 4689999999999999965431 1226789999999999999999999843 122 2334444433222 223333
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCc----cchhhhcccccCCCCCcEEEEEcccHH-HHH-hh
Q 000427 267 TSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNY----DDWDQLRRPFEVGAPGSKIIVTTRNQE-VAK-IM 340 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~ 340 (1521)
........ ....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... ..
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32211110 0113677999999965322 224445444432 2344666664321 111 11
Q ss_pred -CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCC---ChhHHHHHHhc
Q 000427 341 -GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNH---DRSEWEDVLSS 416 (1521)
Q Consensus 341 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~---~~~~w~~~l~~ 416 (1521)
.....+.+.+++.++....+.+.+...+. ..+ .++...|++.++|..-.+......+.... +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 22356899999999998888877643322 122 35678899999998877665444443321 2233322221
Q ss_pred ccccCcccccCchhHHHHhHh-cCChhhHHHHhHhcccCCCcccChHHHHHHHHHcCCccC
Q 000427 417 KIWELPEERCGIIPALAVSYY-YLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDH 476 (1521)
Q Consensus 417 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~ 476 (1521)
.+....++.++..-+. .=+......+.. ..++. ..+..|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122456666665554 222222222211 12233 45778999999764
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=5.7e-07 Score=108.72 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=117.9
Q ss_pred CCccEEEeccCCCchhhhhhcCCCC-CccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEe
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNT-SLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIY 1285 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 1285 (1521)
+.++.|++.+|++.. ++.....+. +|+.|++++|++.. +|..+..+++|+.|++++|++....+ ..+..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhh-hhhhhhhhhhee
Confidence 468888888888765 344445553 88888888887764 33456778888888888888776543 333678888888
Q ss_pred eccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceEEecC-CCCC
Q 000427 1286 ISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGG-ELPS 1364 (1521)
Q Consensus 1286 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-~~~~ 1364 (1521)
+++|.+.. +|........|++|.+++|+.. ..+..+..+.++..+.+.+|++. .++..+..+++++.|++++ .+..
T Consensus 193 ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence 88888766 4444445556888888888533 33445666777777777777764 3356777777888888876 3444
Q ss_pred cccCCCCcccceeeecccc
Q 000427 1365 LEEDGLPTKIQSLHIRGNM 1383 (1521)
Q Consensus 1365 ~~~~~~~~~L~~L~l~~n~ 1383 (1521)
+..++...++++|++++|.
T Consensus 270 i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 270 ISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccCccCEEeccCcc
Confidence 4446677788888888873
No 68
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=1.9e-06 Score=84.64 Aligned_cols=119 Identities=23% Similarity=0.249 Sum_probs=78.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
+++.|.|+.|+||||++++++.+.. .-..+++++..+....... ..+ ..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999997432 2345667766544321100 000 223333334447
Q ss_pred eEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHhh------CCCCceeCCCCChhhH
Q 000427 295 KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIM------GTVPAYQLKKLSDNDC 356 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 356 (1521)
+.+|++|++... .+|......+.+..+..+|++|+........- +....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999655 67887776666655678999999987665331 1224589999988763
No 69
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.26 E-value=1.5e-06 Score=96.99 Aligned_cols=288 Identities=18% Similarity=0.191 Sum_probs=176.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFN-LKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
.+-+.++|.|||||||++-++.. +...|. .+.+|....-.|...+.-.+...++.... +-+.....+.....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRIG 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHHh
Confidence 58899999999999999999887 445675 45556666556666666666665665433 22233445666778
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHhhCCCCceeCCCCChh-hHHHHHHHhhhCCC-CC
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIMGTVPAYQLKKLSDN-DCLAVFVQHSLGTR-DF 370 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~-~~ 370 (1521)
++|.++|+||..+- .+.-..+...+..+...-.|+.|+|..-. ..+...+.+.+|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997221 11112222333344455678888887533 234456788888775 78999887763221 11
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHHHhcccccCcc-------cccCchhHHHHhHhcCChhh
Q 000427 371 SSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVLSSKIWELPE-------ERCGIIPALAVSYYYLSAPL 443 (1521)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-------~~~~i~~~l~~sy~~L~~~~ 443 (1521)
.-...-...+.+|.++.+|.|++|..+++..+.- ...+-..-++.....+.+ .+....+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122235678889999999999999999888763 222222222221111111 12446788999999999988
Q ss_pred HHHHhHhcccCCCcccChHHHHHHHHHcCCccCCCCCCChhHHHHHHHHHHHhCCCccccC-CCCCcEEEehhHHHHHHH
Q 000427 444 KQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDDFGRKIFKELHSRSFFQQSS-NDASRFVMHDLISDLAQW 522 (1521)
Q Consensus 444 k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-~~~~~~~mHdli~~~~~~ 522 (1521)
+.-|.-++.|...+.-. ...|.+-|-.... ..-....-+..+++++++-..+ .....|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998776544 3345554432110 1122333466778888775432 112234444445555543
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.5e-07 Score=113.55 Aligned_cols=236 Identities=19% Similarity=0.160 Sum_probs=129.6
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEee
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 1286 (1521)
..++.+.+..|.+.. +-..+..+.+|..|++.+|++.+... .+..+++|++|++++|.+....+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 356666666666644 22336667777888888777765422 15567777888888877766532 455666777777
Q ss_pred ccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceEEecC-CCCCc
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGG-ELPSL 1365 (1521)
Q Consensus 1287 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-~~~~~ 1365 (1521)
++|.+... ..+..+++|+.+++++|.+...-+.....+.+|+.+.+.+|.+... ..+..+..+..+++.+ .+..+
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 77777663 4455577777777777766544320035566777777777776432 2333344444444443 23322
Q ss_pred ccCCCCcc--cceeeeccccchhhhhhhccccccccCcc-ceEEeccccCCCccCcccccccCCCCCCCccccceecccc
Q 000427 1366 EEDGLPTK--IQSLHIRGNMEIWKSMVERGRGFHRFSSM-RHLEIGGCYDDMVSFPLEDKRLGTALPLPASLTSLSILLF 1442 (1521)
Q Consensus 1366 ~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~~~~~l~~l-~~l~~~~~~~~l~~l~l~~n~l~~~~~~~~~l~~L~~l~l 1442 (1521)
.....+.. |+.+++++|+ +... .. +.. ...+..+++.+|++.... .+.....+..+..
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~---------------i~~~~~~--~~~-~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNR---------------ISRSPEG--LEN-LKNLPVLDLSSNRISNLE-GLERLPKLSELWL 284 (414)
T ss_pred cCcccchhHHHHHHhcccCc---------------ccccccc--ccc-cccccccchhhccccccc-cccccchHHHhcc
Confidence 22222333 6777777773 1111 11 111 245566666777665532 2233333333333
Q ss_pred cccc-----c-ccc-cCCCCCccCceecccCCCC
Q 000427 1443 SNLE-----R-LPS-SIVDLQNLTELRLHGCPKL 1469 (1521)
Q Consensus 1443 ~~l~-----~-lp~-~~~~l~~L~~L~ls~c~~l 1469 (1521)
+... + ... .....+.+..+.+..++.-
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 285 NDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred CcchhcchhhhhccccccccccccccccccCccc
Confidence 3321 1 111 2455667777777776533
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=4.8e-06 Score=85.13 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=72.5
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 000427 190 YGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSI 269 (1521)
Q Consensus 190 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 269 (1521)
+|++..++.+...+... ..+.+.|+|.+|+||||+|+++++... ..-..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999998888543 236889999999999999999998432 112345666665443322211111000
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCC------CCCcEEEEEcccHH
Q 000427 270 VADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVG------APGSKIIVTTRNQE 335 (1521)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~~ 335 (1521)
............++.+||+||++.........+...+... ..+.+||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999753212222232222221 36788888888643
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3.2e-06 Score=96.36 Aligned_cols=39 Identities=28% Similarity=0.532 Sum_probs=22.6
Q ss_pred CCCccEEEEecCCCccccccccCCCCCceEEEeCCCCCCccc
Q 000427 1114 HSSLEILNIQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLT 1155 (1521)
Q Consensus 1114 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~i~~c~~L~~l~ 1155 (1521)
+.+++.|++++| .++.+| .+|.+|+.|.+.+|.+|+.++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLP 89 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCC
Confidence 355556666655 455554 456666666666666654443
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.4e-05 Score=88.33 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=126.5
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccc-e-eEEEEeCCCCCHHHHHHHHH
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFN-L-KAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~i~ 266 (1521)
+.+|+.+++++...|...-. +..+.-+.|+|..|+|||+.++.|++. ++.... . +++|++-...+..+++.+|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 88999999999998865532 223344899999999999999999984 333321 2 78999999999999999999
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhC--CceEEEEEeCCCCcCccchhhhcccccCCCC-CcEE--EEEcccHHHHHhhC
Q 000427 267 TSIVADQNVDNLNLNSLQEKLNKQLS--GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAP-GSKI--IVTTRNQEVAKIMG 341 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--ivTtR~~~v~~~~~ 341 (1521)
.+++.... ......+....+.+.+. ++.+++|||++..-....-+-+...+..... +++| |..+-+......+.
T Consensus 95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99974433 44555666666666664 5789999999954321111333333332222 3444 33444433333221
Q ss_pred -------CCCceeCCCCChhhHHHHHHHhhhCC-CCCCCChhHHHHHHHHHHhcCC-ChHHHHH
Q 000427 342 -------TVPAYQLKKLSDNDCLAVFVQHSLGT-RDFSSHKSLEEIGKKIVTKCDG-LPLAAQT 396 (1521)
Q Consensus 342 -------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 396 (1521)
....+..+|-+.+|-...+..++-.. .+....+..-+.+..++..-+| -=.||..
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 11237789999999999998887321 1222233333334444444443 3344444
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.6e-08 Score=117.56 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=79.3
Q ss_pred CccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeec
Q 000427 1208 SLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYIS 1287 (1521)
Q Consensus 1208 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 1287 (1521)
.|...+.++|.+. .+...+.-++.|+.|||++|++...- .+..++.|+.|||++|.+....--...++. |..|.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4556666666653 33455556677777777777776552 566677777777777776654333334444 7777777
Q ss_pred cccccccccccCCCCCCcceeecccCCCcccCCC-CCCCccccceeeccccccc
Q 000427 1288 ECENLKILPSGLHNLHQLREISVERCGNLVSFPE-GGLPCAKVTKLCIRWCKRL 1340 (1521)
Q Consensus 1288 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~~~ 1340 (1521)
+|.+... .++.+|.+|+.||+++|-+.+.-.- -+..+..|++|.+.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7776653 4567777777788877754432111 1223557777778887763
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.23 E-value=2.4e-05 Score=81.11 Aligned_cols=183 Identities=21% Similarity=0.212 Sum_probs=92.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+|||-+.-++.+.-++..... .++...-+.+||++|+||||||.-+++. ....|. +.+.. ..+-..-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~k~~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIEKAGDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C--SCHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhhhHHHHHHHH
Confidence 5799999888877655543211 2345778899999999999999999983 333442 22221 111111112222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhccccc--------CC-----------CCCcEE
Q 000427 267 TSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFE--------VG-----------APGSKI 327 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~--------~~-----------~~gs~i 327 (1521)
..+. ++-+|.+|+++.-+...-+.+...+. .. .+=+-|
T Consensus 97 ~~l~-----------------------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 97 TNLK-----------------------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HhcC-----------------------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 2221 23355556664432222222211110 00 112344
Q ss_pred EEEcccHHHHHhhCCC--CceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCC
Q 000427 328 IVTTRNQEVAKIMGTV--PAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRG 403 (1521)
Q Consensus 328 ivTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 403 (1521)
=-|||...+..-.... -..+++..+.+|-.++..+.+---. -+--++.+.+|++++.|-|--+.-+-+..+.
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 5788875444333222 2358999999999999987663211 1223578899999999999877666665553
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=2.4e-05 Score=97.69 Aligned_cols=202 Identities=20% Similarity=0.222 Sum_probs=118.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc---ceeEEEEeCCC---CCHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF---NLKAWTCVSDD---FDVIRL 261 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~ 261 (1521)
+++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 5889999999888777432 34579999999999999999998754322222 12345544321 122222
Q ss_pred HHHH---------------HHHhhcCC-----------------CCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCcc
Q 000427 262 TKTI---------------LTSIVADQ-----------------NVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYD 309 (1521)
Q Consensus 262 ~~~i---------------~~~~~~~~-----------------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~ 309 (1521)
...+ +...+... +.+..+ ...+..+.+.++++++.++-|+.|..+..
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 1111 11111100 001111 23567888889999999998888877767
Q ss_pred chhhhcccccCCCCCcEEEE--EcccHHH-HHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHH
Q 000427 310 DWDQLRRPFEVGAPGSKIIV--TTRNQEV-AKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVT 385 (1521)
Q Consensus 310 ~~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 385 (1521)
.|+.+...+....+...|++ ||++... .... .....+.+.+++.+|.++++.+.+-... .... .++.+.|++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHH
Confidence 88888877766655555555 5664331 1111 1224578899999999999988763211 1111 234444555
Q ss_pred hcCCChHHHHHHHhh
Q 000427 386 KCDGLPLAAQTLGGL 400 (1521)
Q Consensus 386 ~~~g~PLai~~~~~~ 400 (1521)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 544335555544433
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.5e-05 Score=92.67 Aligned_cols=193 Identities=19% Similarity=0.215 Sum_probs=112.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccce-eEEEEeCCCCCHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNL-KAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 265 (1521)
.++||-+..+..+...+.... -...+.++|+.|+||||+|+.+++.......... ..+..+....+ ...+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHH
Confidence 357899999988888775432 2457889999999999999999874211111000 00000000000 0011
Q ss_pred HH-------HhhcCCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEE-EEccc
Q 000427 266 LT-------SIVADQNVDNLNLNSLQEKLNK----QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKII-VTTRN 333 (1521)
Q Consensus 266 ~~-------~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~ 333 (1521)
.. .+... .....+++...+.. -..+++-++|+|+++.-....|+.+...+......+++| +||+.
T Consensus 92 ~~~~h~Dv~eidaa---s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 92 NNHNHPDIIEIDAA---SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred hcCCCCcEEEeecc---CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 00 00000 11122333222221 124567789999998766677888877776655566665 45555
Q ss_pred HHHHHhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 334 QEVAKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 334 ~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
..+..... ....+++++++.++..+.+.+.+...+.. . -.+....|++.++|.+--+.
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-i---e~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-T---DIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHH
Confidence 55544332 23569999999999999998887433211 1 13556779999999885543
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.9e-05 Score=93.23 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=111.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||-+..++.|.+++.... -...+.++|..|+||||+|+.+.+....... +...-+ .+.....-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 368999999999999996543 2456789999999999999999763211000 000000 000000000111111
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE-EcccHHH
Q 000427 267 TS-----IVADQNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV-TTRNQEV 336 (1521)
Q Consensus 267 ~~-----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v 336 (1521)
.. +..+.. .....+++.+.+... ..++.-++|+|++..-+...++.+...+..-..+.++|+ ||....+
T Consensus 89 aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 000000 111223322222221 245566999999977666677777777655445556554 4444444
Q ss_pred HHhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 337 AKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 337 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
...+. -...+.++.++.++..+.+.+.+-..+ ... -.+..+.|++.++|.|.-+..+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 43221 235799999999999988877653221 111 1345678999999999755444
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=9.8e-06 Score=94.99 Aligned_cols=197 Identities=16% Similarity=0.106 Sum_probs=111.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||-+..+..|..++.... -...+.++|+.|+||||+|+.+++..... .... ...+........+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 368999999999988886542 13467899999999999999998742111 0000 000111111111111110
Q ss_pred HHh---hcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcc-cHHHHHhh-
Q 000427 267 TSI---VADQNVDNLNLNSLQEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTR-NQEVAKIM- 340 (1521)
Q Consensus 267 ~~~---~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~- 340 (1521)
..+ .........+..++.+.+... ..++.-++|+|++..-..+.++.+...+........+|++|. ...+....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 000000112222333333221 245666999999977766778888776655444555554444 44443222
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 341 GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
.....|.+.+++.++..+.+.+.+-..+. .. -.+....|++.++|.+.-+.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~---e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-QY---DQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCChHHHHH
Confidence 22356999999999998888877633221 11 13567889999999985443
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.6e-05 Score=93.11 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=110.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc-------------------ccccee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL-------------------DHFNLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 247 (1521)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..... +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368999999999998885432 24567899999999999999998622110 011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcE
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSK 326 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (1521)
+++.......+ ++.+++.+.+.. -..+++-++|+|++..-....++.+...+......++
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22222111111 112222222221 1245667999999976655667777777766555666
Q ss_pred EEE-EcccHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHh
Q 000427 327 IIV-TTRNQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTLGG 399 (1521)
Q Consensus 327 iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 399 (1521)
+|+ ||....+.... .....+++++++.++..+.+.+.+-..+ ... -++....|++.++|.+- |+..+-.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~---e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INS---DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 664 54444443222 2236799999999998877776542221 111 23556779999999774 4444443
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=2.7e-06 Score=92.55 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCccc-----HHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD--FDVIRLTKTILTSIVADQNVDNLN-----LNSLQEK 286 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~ 286 (1521)
-..++|+|++|+|||||+++++++.... +|+..+|+.+.+. .++.++++++...+.......... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999975444 8999999997776 789999999844433322211110 0111111
Q ss_pred HHH-HhCCceEEEEEeCC
Q 000427 287 LNK-QLSGKKFLLVLDDV 303 (1521)
Q Consensus 287 l~~-~l~~~~~LlVlDdv 303 (1521)
... .-.++++++++|++
T Consensus 95 a~~~~~~G~~vll~iDei 112 (249)
T cd01128 95 AKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHCCCCEEEEEECH
Confidence 111 12579999999999
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=6.6e-05 Score=90.13 Aligned_cols=187 Identities=15% Similarity=0.177 Sum_probs=105.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccc--c-----------------cee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDH--F-----------------NLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f-----------------~~~ 247 (1521)
.++||.+...+.+...+..+. -...+.++|++|+||||+|+.+++....... + ..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888888775432 2356789999999999999999873211100 0 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcE
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSK 326 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (1521)
..++++....... ..++.+.... -..+++-++|+|+++.-.....+.+...+........
T Consensus 89 ~el~aa~~~gid~-------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGIDE-------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCHHH-------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 1222211111111 1111111111 1234567999999955433444556555544333444
Q ss_pred EEEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCC-hHHHHHHHhhh
Q 000427 327 IIVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGL-PLAAQTLGGLL 401 (1521)
Q Consensus 327 iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~~l 401 (1521)
+|++|.+ ..+.... .....+++.+++.++....+.+.+...+-.-+ ++....|++.++|. +.|+..+..+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444433 4443332 22357899999999988888877643221111 35567788877654 66766665543
No 83
>PTZ00202 tuzin; Provisional
Probab=98.17 E-value=2e-05 Score=88.81 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=102.6
Q ss_pred cccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 184 VKEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 184 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
.+.+.|+||++|...+...|...+ .+..+++.|+|++|+|||||++.+..... + ...+++.. +..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 345689999999999999996543 23457999999999999999999997432 1 12223322 6799999
Q ss_pred HHHHHhhcCCCCCc-ccHHHHHHHHHHHh-C-CceEEEEEeCCCCcC-ccchhhhcccccCCCCCcEEEEEcccHHHHHh
Q 000427 264 TILTSIVADQNVDN-LNLNSLQEKLNKQL-S-GKKFLLVLDDVWNRN-YDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 264 ~i~~~~~~~~~~~~-~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 339 (1521)
.++.+++.+..... +-.+.+.+.+.+.- . +++.+||+-==.-.+ ...+.+.. .+.....-|.|++---.+.+.-.
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchh
Confidence 99999997433111 12234444444322 2 677777764221110 01122211 23334456777766554433221
Q ss_pred hC---CCCceeCCCCChhhHHHHHHHh
Q 000427 340 MG---TVPAYQLKKLSDNDCLAVFVQH 363 (1521)
Q Consensus 340 ~~---~~~~~~l~~L~~~~~~~lf~~~ 363 (1521)
.. .-.-|.+++++.++|.++..+.
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 1245889999999998887654
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.16 E-value=2.5e-05 Score=84.23 Aligned_cols=158 Identities=21% Similarity=0.254 Sum_probs=98.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
+...+.+||++|+||||||+.+....+... ..||..|....-..-.++|+++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhh
Confidence 567888999999999999999998543322 4567766654444444555543221 12356
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE--EcccHHH---HHhhCCCCceeCCCCChhhHHHHHHHhh--h
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV--TTRNQEV---AKIMGTVPAYQLKKLSDNDCLAVFVQHS--L 365 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~--~ 365 (1521)
.+|.+|.+|.|..-+..+.+ .++|.-..|.-++| ||.++.. +.......++.+++|+.++-..++.+.. .
T Consensus 221 krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 78999999999553322222 34566667776664 5665432 2223344689999999999988887743 2
Q ss_pred CCC-C---CCCCh---hHHHHHHHHHHhcCCChHH
Q 000427 366 GTR-D---FSSHK---SLEEIGKKIVTKCDGLPLA 393 (1521)
Q Consensus 366 ~~~-~---~~~~~---~~~~~~~~i~~~~~g~PLa 393 (1521)
+.. . .-+.+ --..+.+-++..|.|-.-+
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 221 1 12221 2235667778888887643
No 85
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.16 E-value=2.9e-07 Score=99.09 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=82.1
Q ss_pred CCccEEEeccCCCchhh----hhhcCCCCCccEEEeecCCCCccc-------------CCCCCCccccceeeecccCCch
Q 000427 1207 PSLKSLDVYRCSKLESI----AERLDNNTSLETIRISNCESPKIL-------------PSGLHNLRQLRKISIQMCGNLE 1269 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~-------------p~~l~~l~~L~~L~Ls~n~~~~ 1269 (1521)
|.|++|+||+|-+...- ...+.++.+|++|.|.+|.+...- ......-+.|++++.+.|++-.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 48899999998875332 234567888999999888764221 1123334677777777777654
Q ss_pred h----hhhhhcCCCCcceEeecccccccc----ccccCCCCCCcceeecccCCCcc----cCCCCCCCccccceeecccc
Q 000427 1270 S----IAERLDNNTSLEDIYISECENLKI----LPSGLHNLHQLREISVERCGNLV----SFPEGGLPCAKVTKLCIRWC 1337 (1521)
Q Consensus 1270 ~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~p~~~~~~~~L~~L~l~~n 1337 (1521)
. +...|+..+.|+.+.+..|.+... +...|..++.|+.|||.+|.+.. .+...+..+++|++|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3 344566667777777777766432 22345666777777777765543 12223444556666666666
Q ss_pred cccc
Q 000427 1338 KRLE 1341 (1521)
Q Consensus 1338 ~~~~ 1341 (1521)
.+..
T Consensus 252 ll~~ 255 (382)
T KOG1909|consen 252 LLEN 255 (382)
T ss_pred cccc
Confidence 6543
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=98.16 E-value=4.2e-05 Score=88.53 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=104.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFN-LKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 265 (1521)
.+++|.++.++.|..++... +.+-+.++|++|+||||+|+.+++.. ....|. .++-++.++..+.. ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 35789988888888877433 23457799999999999999998742 112222 11222223222222 22222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HHHHhh-CCC
Q 000427 266 LTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EVAKIM-GTV 343 (1521)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~ 343 (1521)
+..+..... . .-.++.-++++|++..-.......+...+......+++|+++... .+.... ...
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222111000 0 002346689999996654444455555454434566777766542 221111 112
Q ss_pred CceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 344 PAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 344 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
..++++++++++..+.+...+-..+-. -+ .+....|++.++|..-.+.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~-i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVP-YV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHH
Confidence 468999999999998888776332211 11 3567789999998775444
No 87
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=3.8e-05 Score=84.08 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.|+|..|+|||.||+++++.. ......+.|+++.+ ....+. ..+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-hc
Confidence 569999999999999999998743 22333456665422 111111 1111 11 12
Q ss_pred eEEEEEeCCCCcC-ccchhh-hcccccC-CCCCcEEEEEccc---------HHHHHhhCCCCceeCCCCChhhHHHHHHH
Q 000427 295 KFLLVLDDVWNRN-YDDWDQ-LRRPFEV-GAPGSKIIVTTRN---------QEVAKIMGTVPAYQLKKLSDNDCLAVFVQ 362 (1521)
Q Consensus 295 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 362 (1521)
.-+||+||+.... ...|.. +...+.. ...|..||+|++. +++.+.+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3489999995432 123432 2222221 2246679999985 23333344456799999999999999998
Q ss_pred hhhCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000427 363 HSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAA 394 (1521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 394 (1521)
++...+- ..+ ++...-|++.++|..-++
T Consensus 174 ~a~~~~l-~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL-ALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhCCCCHHHH
Confidence 7743221 111 356777888888776665
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.5e-05 Score=93.93 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=107.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... +..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence 468999999999999986542 246789999999999999999977321111000 0000000 0000000
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HH
Q 000427 267 TS-----IVADQNVDNLNLNSLQEKLNK----QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EV 336 (1521)
Q Consensus 267 ~~-----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 336 (1521)
.. +..... .....+++.+.+.. -..+++-++|+|++..-+......+...+.......++|++|.+. .+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 11122222222211 123556689999996554444555666665444456677666543 22
Q ss_pred HHh-hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 337 AKI-MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 337 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
... .+....+.+++++.++..+.+.+.+-..+. .. -.+....|++.++|.+.-+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 211 122246888999999999888876633221 11 1356788999999988554443
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.13 E-value=4.7e-05 Score=89.19 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=104.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe--CCCCCHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCV--SDDFDVIRLTKT 264 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 264 (1521)
.+++|++..++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..++.+ +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998543 234579999999999999999987421 11221 112222 2221111 1111
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HHHHhh-CC
Q 000427 265 ILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EVAKIM-GT 342 (1521)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~ 342 (1521)
.+.++..... .....+-++++|++..-..+....+...+......+++|+++... .+.... ..
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001235689999985543334455655554444556777766432 221111 12
Q ss_pred CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 343 VPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 343 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
...+++.+++.++....+.+.+...+- .- -.+.+..+++.++|.+.-+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i---~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI-EI---TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 235899999999998888877643221 11 135677889999998876443
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.2e-05 Score=93.34 Aligned_cols=197 Identities=18% Similarity=0.220 Sum_probs=108.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... |.-|... ...+.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 468999999999999885532 236788999999999999999987321 1112111 0111111111111
Q ss_pred HHhhcC----CCCCcccHHH---HHHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-ccHHHH
Q 000427 267 TSIVAD----QNVDNLNLNS---LQEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-RNQEVA 337 (1521)
Q Consensus 267 ~~~~~~----~~~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 337 (1521)
...... ........++ +...+... ..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000 0000011222 22221111 12334469999996655556677776665544455565544 444443
Q ss_pred Hh-hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHh
Q 000427 338 KI-MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTLGG 399 (1521)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 399 (1521)
.. ......+++.+++.++....+...+-..+. ..+ .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 222357999999999998888876532221 111 3557789999999765 4444433
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.11 E-value=8.7e-05 Score=88.29 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=108.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc--------------------cccce
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL--------------------DHFNL 246 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~ 246 (1521)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.++...... .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 357999999999999985432 24678899999999999998887632100 01221
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCc
Q 000427 247 KAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGS 325 (1521)
Q Consensus 247 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 325 (1521)
+++........ + +..++.+.+.. -..+++-++|+|++..-.......+...+......+
T Consensus 89 -~~~~~~~~~~~-~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 -IEIDAASNNGV-D------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred -EEeeccccCCH-H------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 22222111111 1 11112222111 122445588999985443345566666665444566
Q ss_pred EEEEEcccHH-HHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 326 KIIVTTRNQE-VAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 326 ~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
.+|++|.+.. +.... .....+++.+++.++..+.+...+-..+. ..+ .+.+..+++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 6666665543 33222 22356889999999998888877633221 111 3677889999999997665543
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=4.5e-05 Score=93.67 Aligned_cols=196 Identities=16% Similarity=0.153 Sum_probs=112.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.......+. ...+..-...++|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999988885542 235578999999999999999987421111000 00111111111111
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHH
Q 000427 267 TS-------IVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVA 337 (1521)
Q Consensus 267 ~~-------~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 337 (1521)
.. +........++..++.+.+.. -..+++-++|+|++..-+....+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 000000011122222222221 13456679999999776666677777766655456666655554 4443
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
..+ .....|.+++++.++..+.+.+.+-..+. .. -.+....|++.++|.+--+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 22357999999999999888876522211 11 13556789999999887554443
No 93
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=6e-07 Score=108.27 Aligned_cols=168 Identities=22% Similarity=0.220 Sum_probs=86.4
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhh-hhhcCCCCcceEe
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIA-ERLDNNTSLEDIY 1285 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~ 1285 (1521)
++|+.|+|++|.+.... .+..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+|+.++
T Consensus 118 ~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~ 192 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD 192 (414)
T ss_pred hcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence 35555666666554422 244445566666666665543 334446666666666666655433 2 35566666666
Q ss_pred eccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccceEEecC-CCCC
Q 000427 1286 ISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGG-ELPS 1364 (1521)
Q Consensus 1286 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-~~~~ 1364 (1521)
+.+|.+... ..+..+..+..+++..|.+...-+.....+.+|+.+++++|++.. .+..+..+.++..|++.+ .+..
T Consensus 193 l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 193 LGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence 666665443 223333444444566665544322211111126666777766642 224455566666666653 3333
Q ss_pred cccCCCCcccceeeeccc
Q 000427 1365 LEEDGLPTKIQSLHIRGN 1382 (1521)
Q Consensus 1365 ~~~~~~~~~L~~L~l~~n 1382 (1521)
+......+.+..+...+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 270 LEGLERLPKLSELWLNDN 287 (414)
T ss_pred cccccccchHHHhccCcc
Confidence 333444455555555555
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7e-05 Score=91.90 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--NLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 264 (1521)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++........ ....+ ..++.-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 368998888899998886542 24677899999999999999996532110000 00000 00011111111
Q ss_pred HHH-------HhhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-c
Q 000427 265 ILT-------SIVADQNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-R 332 (1521)
Q Consensus 265 i~~-------~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R 332 (1521)
|.. .+... .....++..+.+... ..++.-++|+|+|+.-+...++.+...+.......++|++| .
T Consensus 87 i~~g~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 87 IDSGRFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHcCCCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 100 00000 011222222222111 12445589999998776667777777776555566666555 4
Q ss_pred cHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 333 NQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 333 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
...+.... .....+++++++.++..+.+.+.+-..+- .. -.+....|++.++|.+--+..+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 34443222 22367999999999998888876533221 11 1356678899999988655443
No 95
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-07 Score=98.75 Aligned_cols=180 Identities=21% Similarity=0.271 Sum_probs=101.2
Q ss_pred cccceeEeecCCCcc-ccCCcccCCCCCcEEEEecCCCCccCC-CCCCCCcccEEEeccCCCCCCCCcccccCCCCCccE
Q 000427 1042 SRLEYLELNRCEGLV-KLPQSSFSLSSLREIEIYNCSSLVSFP-EVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEI 1119 (1521)
Q Consensus 1042 ~~L~~L~Ls~~~~~~-~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~L~~L~l~~n~~l~~~~~~~~~~~~~~L~~ 1119 (1521)
+.|++|||++..+.. .+...+..|.+|+.|.|.++.+-..+. .+..-.+|+.|+++.|..++.........+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 467788887776643 223345677888888888876654332 245567788888888887776555555557888888
Q ss_pred EEEecCCCcccc---ccccCCCCCceEEEeCCCCCCccccccccccCCCCCCCccccceEEeecCCCcccccccCCCchh
Q 000427 1120 LNIQYCCSLTYI---AAVQLPSSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPAT 1196 (1521)
Q Consensus 1120 L~L~~~~~l~~~---~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~l~l~~c~~L~~~~~~~~~~~~ 1196 (1521)
|+|+.|...+.. ....+..+++.|++.||..-- ..+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl------------------------------------~~sh---- 304 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL------------------------------------QKSH---- 304 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh------------------------------------hhhH----
Confidence 888887543322 112233444444444443110 0000
Q ss_pred hhccccCCCCCCccEEEeccCCCch-hhhhhcCCCCCccEEEeecCCCCcccCC---CCCCccccceeeeccc
Q 000427 1197 LESLEVGNLPPSLKSLDVYRCSKLE-SIAERLDNNTSLETIRISNCESPKILPS---GLHNLRQLRKISIQMC 1265 (1521)
Q Consensus 1197 l~~l~~~~~p~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~---~l~~l~~L~~L~Ls~n 1265 (1521)
+..+ ..-+|+|..|||++|.... .....|..++.|++|.++.|... +|. .+...|+|.+|++.+|
T Consensus 305 ~~tL--~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHH--HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 0000 0011577777777775443 23345666777777777777632 333 2333445555555444
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7.8e-05 Score=88.85 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-------------------cccccee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV-------------------LDHFNLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~~~ 247 (1521)
.++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.... .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999998888888875432 2357889999999999999998752100 0011122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEE
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKI 327 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (1521)
+.++.+....+.+ .+++++.... .-..+++-++|+|++..-.....+.+...+.......++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~-----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY-----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh-----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333332222221 1222221110 002345568999999665555667777777665566766
Q ss_pred EEEcc-cHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 328 IVTTR-NQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 328 ivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
|++|. ...+...+ .....+++++++.++..+.+.+.+...+... -++.+..|++.++|.+..+.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 65554 44554332 2335789999999999988887764322111 13556789999999886443
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.8e-05 Score=91.12 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=107.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc-------------------cccee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD-------------------HFNLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 247 (1521)
.++||-+..++.+..++.... -...+.++|+.|+||||+|+.+++...... .|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 368999999999999996542 235678999999999999999887321111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEE
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKI 327 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (1521)
+.+..+....+.+ .+++++.+.. .-..++.-++|+|+|..-.....+.+...+......+++
T Consensus 91 ~eidaas~~~v~~-iR~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVED-TRELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHHH-HHHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2222221111111 1112211110 011345568999999776656677777766655566777
Q ss_pred EEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 328 IVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 328 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
|++|.+ ..+.... .....+++++++.++..+.+.+.+-..+. ... .+....|++.++|.+.-+..
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHH
Confidence 765544 3333221 12356889999999887776665532221 111 24567789999998865444
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=3.9e-05 Score=96.53 Aligned_cols=171 Identities=24% Similarity=0.292 Sum_probs=96.0
Q ss_pred CccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKK---DVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
.+|+|.+..+. .+...+... +...+.++|++|+||||+|+.+++. ...+|.. +++.. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhhH----
Confidence 35889887764 455555332 3466789999999999999999973 3334411 11110 0000
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHh--CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEE--cccHH--HH
Q 000427 264 TILTSIVADQNVDNLNLNSLQEKLNKQL--SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVT--TRNQE--VA 337 (1521)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~ 337 (1521)
+..+......+.+ .+++.+||+||++.-....++.+...+. .|+.++|+ |.+.. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111111111111 2467799999996654445555554332 35555553 44321 21
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhC------CCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLG------TRDFSSHKSLEEIGKKIVTKCDGLPLAA 394 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~PLai 394 (1521)
... .....+.+++++.++...++.+.+-. .....- -++....|++.+.|.--.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHHHH
Confidence 111 12357999999999999998876531 111111 2355677888888865433
No 99
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=8.1e-05 Score=87.12 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=106.0
Q ss_pred ccccchhHHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLS----NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
+++|-+..++.+..++..+... +..-...+.++|+.|+|||++|+.++........- +..++.. ..-+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HHHH
Confidence 5889999999999999664210 01124668899999999999999987521110000 0000000 0000
Q ss_pred HHHHHhhc-----CCCCCcccHHHHH---HHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-
Q 000427 264 TILTSIVA-----DQNVDNLNLNSLQ---EKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN- 333 (1521)
Q Consensus 264 ~i~~~~~~-----~~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~- 333 (1521)
.+...-.. .........+++. +.+.. -..+++-++|+|++..-.......+...+.....+..+|++|.+
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 00000000 0000111222222 21111 11345558888999665555556666666554556666666655
Q ss_pred HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 334 QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 334 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
..+...+ .....+.+.+++.++..+.+.+.. + .+ .+.+..+++.++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3443332 223579999999999988886432 1 11 345778999999999766544
No 100
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=8.6e-06 Score=91.78 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC--CHHHHHHHHHHHhhcCCCCCcccHHHHH-----HHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDF--DVIRLTKTILTSIVADQNVDNLNLNSLQ-----EKL 287 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~l 287 (1521)
...+|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++++...+..... +........ -..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHHH
Confidence 567899999999999999999975444 89999999999887 778888888743332221 111111111 111
Q ss_pred HHH--hCCceEEEEEeCC
Q 000427 288 NKQ--LSGKKFLLVLDDV 303 (1521)
Q Consensus 288 ~~~--l~~~~~LlVlDdv 303 (1521)
.++ -.+++++|++|++
T Consensus 248 Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHcCCCEEEEEECh
Confidence 111 3679999999999
No 101
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.0001 Score=85.54 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=111.5
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeE------EEEeCCCCCHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKA------WTCVSDDFDVI 259 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~ 259 (1521)
-.+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++..--........ =..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 3578999999999999886543 245788999999999999988876321111000000 00000000
Q ss_pred HHHHHHHHHh-------hc---CCC---CCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCcCccchhhhcccccCC
Q 000427 260 RLTKTILTSI-------VA---DQN---VDNLNLNSLQEKLNKQL-----SGKKFLLVLDDVWNRNYDDWDQLRRPFEVG 321 (1521)
Q Consensus 260 ~~~~~i~~~~-------~~---~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (1521)
...+.+...- .. ... ...-..+++. .+.+.+ .+++-++|+||+...+......+...+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0111111000 00 000 0111233322 233332 245678999999766666666777666655
Q ss_pred CCCcEEEEEcccH-HHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 322 APGSKIIVTTRNQ-EVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 322 ~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
..++.+|++|... .+.... .....+.+.+++.++..+++.+... . .. .+....+++.++|.|+.+..+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-~----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-D----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-c----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 4566677766664 333222 2235799999999999999977531 1 11 1222678999999998766553
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.03 E-value=9.2e-05 Score=81.22 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=93.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
.+.+.|+|+.|+|||+||+.+++.. ...-..+.++.+..... ...+..+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~----~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW---------------------FVPEVLEGM----EQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh---------------------hhHHHHHHh----hh
Confidence 3578999999999999999998742 22223455665532100 001111111 11
Q ss_pred ceEEEEEeCCCCcC-ccchhh-hcccccC-CCCC-cEEEEEcccH---------HHHHhhCCCCceeCCCCChhhHHHHH
Q 000427 294 KKFLLVLDDVWNRN-YDDWDQ-LRRPFEV-GAPG-SKIIVTTRNQ---------EVAKIMGTVPAYQLKKLSDNDCLAVF 360 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 360 (1521)
--+|++||+.... ...|+. +...+.. ...| .++|+||+.. ++...+....+++++++++++-.+.+
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 1378999995432 134543 2222221 1123 4789998753 44455566678999999999999998
Q ss_pred HHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 000427 361 VQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLL 401 (1521)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 401 (1521)
.+++...+ ...+ +++..-|++.+.|..-++..+-..+
T Consensus 177 ~~~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLRG-FELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 87663321 1112 4677888888988776665554443
No 103
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.03 E-value=9.6e-05 Score=78.47 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=62.5
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDF 370 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 370 (1521)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+.... .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999996655455667777776655566777766653 332222 12357999999999998888775 2
Q ss_pred CCChhHHHHHHHHHHhcCCChHH
Q 000427 371 SSHKSLEEIGKKIVTKCDGLPLA 393 (1521)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~g~PLa 393 (1521)
.+ .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 35688999999998864
No 104
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2.1e-05 Score=89.85 Aligned_cols=166 Identities=27% Similarity=0.456 Sum_probs=84.0
Q ss_pred hcCCCCcceEeeccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccccccCCCCccc
Q 000427 1275 LDNNTSLEDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQ 1354 (1521)
Q Consensus 1275 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 1354 (1521)
+..+.+++.|++++|.+.. +|. --++|++|.+++|..++.+|..+. ++|+.|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 4445667777777775443 341 122577777777766666665442 4777777777754445553 345
Q ss_pred eEEecC-CCCCcccCCCCcccceeeeccccchhhhhhhccccccccCccceEEeccccCCCccCcccccccCCCCCCCcc
Q 000427 1355 ELRIGG-ELPSLEEDGLPTKIQSLHIRGNMEIWKSMVERGRGFHRFSSMRHLEIGGCYDDMVSFPLEDKRLGTALPLPAS 1433 (1521)
Q Consensus 1355 ~L~l~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~l~~l~l~~n~l~~~~~~~~~ 1433 (1521)
.|++++ .+..+ ...+++|+.|.+.++..... . .+. ..+|.+
T Consensus 116 ~L~L~~n~~~~L--~~LPssLk~L~I~~~n~~~~------~---~lp---------------------------~~LPsS 157 (426)
T PRK15386 116 SLEIKGSATDSI--KNVPNGLTSLSINSYNPENQ------A---RID---------------------------NLISPS 157 (426)
T ss_pred eEEeCCCCCccc--ccCcchHhheeccccccccc------c---ccc---------------------------cccCCc
Confidence 555543 11111 12445566666543310000 0 000 012333
Q ss_pred ccceecccccccccccccCCCCCccCceecccCCCC-CCCCCCCCCCcccceeccCChhHHH
Q 000427 1434 LTSLSILLFSNLERLPSSIVDLQNLTELRLHGCPKL-KYFPEKGLPSSLLQLQIWRCPLIEE 1494 (1521)
Q Consensus 1434 l~~L~~l~l~~l~~lp~~~~~l~~L~~L~ls~c~~l-~~lp~~~~~~sL~~L~i~~C~~l~~ 1494 (1521)
|+.|.+-+|.++ .+|..+. .+|+.|+++.|... ..++...+|+++ .|++.+|-.+..
T Consensus 158 Lk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 158 LKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 333333333322 2333333 57888888765321 234555677788 888888855544
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=7.9e-05 Score=81.58 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=93.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
...+.|+|..|+|||.||+.+++.. ...-..++|++..+ +... .. .+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 3678999999999999999998732 22223456666432 1110 01 12222222
Q ss_pred ceEEEEEeCCCCcC-ccchhh-hcccccC-CCCCcEEEEEcccHH---------HHHhhCCCCceeCCCCChhhHHHHHH
Q 000427 294 KKFLLVLDDVWNRN-YDDWDQ-LRRPFEV-GAPGSKIIVTTRNQE---------VAKIMGTVPAYQLKKLSDNDCLAVFV 361 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 361 (1521)
-. ++|+||+.... ...|++ +...+.. ...|..||+|++... +...+....++++++++.++-.+.+.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 67899995332 234544 4433322 234667888887522 22233344678999999999999998
Q ss_pred HhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 000427 362 QHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLL 401 (1521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 401 (1521)
+++...+ ..-+ +++..-|++++.|..-++..+-..|
T Consensus 177 ~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7664322 1112 4777888899988877665554444
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00015 Score=88.89 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=106.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc-------------------cccee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD-------------------HFNLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 247 (1521)
.++||-+..++.+..++.... -...+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368999999999999886542 235678999999999999999976321110 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH----HhCCceEEEEEeCCCCcCccchhhhcccccCCCC
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK----QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAP 323 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1521)
+++..+.. ...+++.+.+.. -..+++-++|+|++..-.....+.+...+.....
T Consensus 91 ~ei~~~~~----------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAASN----------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeecccc----------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 22221111 112222211111 1235667999999966555556667666665545
Q ss_pred CcEEEEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000427 324 GSKIIVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTL 397 (1521)
Q Consensus 324 gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 397 (1521)
.+.+|++|.+ ..+...+ .....+++++++.++..+.+.+.+-..+ ... -++.+..|++.++|.+- |+..+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666665544 3222111 1124689999999998888876653222 111 13556779999999885 44433
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0001 Score=87.85 Aligned_cols=200 Identities=13% Similarity=0.141 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE-eCCCCCHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTC-VSDDFDVIRLTKTI 265 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 265 (1521)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++.......+....|.. +......-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468899998999988885432 234578999999999999999887322111111111110 00111111111111
Q ss_pred HHHhhcC----CCCCcccHHHHHHHHHHH-----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-ccHH
Q 000427 266 LTSIVAD----QNVDNLNLNSLQEKLNKQ-----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-RNQE 335 (1521)
Q Consensus 266 ~~~~~~~----~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 335 (1521)
....... ........+++.+. .+. ..+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1100000 00011112333222 222 23456688999996655556777777776555566666554 4444
Q ss_pred HHHhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 336 VAKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 336 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
+..... ....++++++++++..+.+...+-..+. .. -.+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 443221 1246899999999988888776532211 11 146678899999998854443
No 108
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00018 Score=83.10 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=113.4
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc--ccceeEEEEeCCCCCHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD--HFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
-..++|-++..+.+...+..+. ....+.|+|+.|+||||+|+.+++..-... .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3568999999999999986542 245788999999999999998876321100 011110 001111111222
Q ss_pred HHHHH-------hhcCCC------CCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCcCccchhhhcccccCCCCCc
Q 000427 264 TILTS-------IVADQN------VDNLNLNSLQEKLNKQL-----SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGS 325 (1521)
Q Consensus 264 ~i~~~-------~~~~~~------~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 325 (1521)
.+... +..... ...-..+++. .+.+.+ .+++-++|+|++..-+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 32221 100000 0111233332 333333 3566799999997665556666766665544445
Q ss_pred EEE-EEcccHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 326 KII-VTTRNQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 326 ~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
.+| +|++...+.... .....+.+.+++.++..+++.+.... . . --.+.+..|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 544443332222 12357999999999999999874311 1 1 113456789999999998766543
No 109
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.00024 Score=80.33 Aligned_cols=213 Identities=17% Similarity=0.163 Sum_probs=127.2
Q ss_pred ccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 185 KEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 185 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
++..++||+.|++.+.+|+...- .....+.+.|.|.+|.|||.+...++.+......=..++++++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 35678999999999999997653 2345678999999999999999999986432111124567777665678888999
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCc--eEEEEEeCCCCcCccchhhhcccccC-CCCCcEEEEEcccHH------
Q 000427 265 ILTSIVADQNVDNLNLNSLQEKLNKQLSGK--KFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGSKIIVTTRNQE------ 335 (1521)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~------ 335 (1521)
|...+.......... .+..+.+.+..... -+|+|+|..+.-....-+.+...|.+ .-+++|+|+.---..
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 988884333212222 44555565555443 68999999843211222223333332 235666664432211
Q ss_pred -HHHhh----CCCCceeCCCCChhhHHHHHHHhhhCCCC-CCCChhHHHHHHHHHHhcCCChHHHHHHHhh
Q 000427 336 -VAKIM----GTVPAYQLKKLSDNDCLAVFVQHSLGTRD-FSSHKSLEEIGKKIVTKCDGLPLAAQTLGGL 400 (1521)
Q Consensus 336 -v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 400 (1521)
..+.. .....+..+|-+.++-.++|..+...... ...+..++-.|++++..-|-+=-|+.+.-++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 11111 12356888999999999999998743321 1122233444444444444444444444333
No 110
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.96 E-value=9.3e-05 Score=79.90 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=104.2
Q ss_pred cCccccch-hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc-c-eeEEEEeCCCCCHHHHH
Q 000427 186 EAKVYGRE-IEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF-N-LKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 186 ~~~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~ 262 (1521)
+..++|.. +..-...+.+.... +.....+.|+|..|+|||.|.+++++.. .+.. . .+++++ ..+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~--~~~~~~~~v~y~~------~~~f~ 76 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEA--QKQHPGKRVVYLS------AEEFI 76 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHH--HHHCTTS-EEEEE------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHH--Hhccccccceeec------HHHHH
Confidence 33455653 33344445554432 2244568899999999999999999843 2222 2 345554 34555
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCcc-chhh-hcccccC-CCCCcEEEEEccc------
Q 000427 263 KTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYD-DWDQ-LRRPFEV-GAPGSKIIVTTRN------ 333 (1521)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~iivTtR~------ 333 (1521)
..+...+... ..++ +++.+++ -=+|++||++.-... .|.+ +...+.. ...|.+||+|++.
T Consensus 77 ~~~~~~~~~~------~~~~----~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 77 REFADALRDG------EIEE----FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHHHTT------SHHH----HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred HHHHHHHHcc------cchh----hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 5565555431 1222 3333332 237889999653222 2332 2222221 1346689999964
Q ss_pred ---HHHHHhhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHh
Q 000427 334 ---QEVAKIMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGG 399 (1521)
Q Consensus 334 ---~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 399 (1521)
+++...+...-++++++.+.++-.+++.+++...+- . --++++.-|++.+.+..-.+..+-.
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 234444555668999999999999999988843221 1 1246677788887776666554433
No 111
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=6.6e-06 Score=62.14 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=24.6
Q ss_pred ceeEEEEcCccccccCccccCCcccceeeccCCcccccc
Q 000427 601 RLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLP 639 (1521)
Q Consensus 601 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP 639 (1521)
+|++|++++|.|+.+|..+++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566667777766666666666677777777666666553
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.96 E-value=0.0001 Score=81.13 Aligned_cols=153 Identities=19% Similarity=0.144 Sum_probs=87.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
.+.+.|+|..|+|||+||+.+++... ...+ ...++++..... . + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~----~-------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------A----F-------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------H----H-------------------hhc-c
Confidence 46788999999999999999998421 1121 234444332110 0 0 011 1
Q ss_pred ceEEEEEeCCCCcCccchhhhcccccC-CCCCc-EEEEEcccHHHH--------HhhCCCCceeCCCCChhhHHHHHHHh
Q 000427 294 KKFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGS-KIIVTTRNQEVA--------KIMGTVPAYQLKKLSDNDCLAVFVQH 363 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 363 (1521)
..-+||+||+..-....-+.+...+.. ...+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 233788999954322222334333322 12333 467777653322 12223357899999998877777654
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhC
Q 000427 364 SLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLR 402 (1521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 402 (1521)
+-..+ ...+ ++....+++.+.|.+..+..+...+.
T Consensus 170 ~~~~~-v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 170 AAERG-LQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 42211 1122 36777888899999998877766553
No 113
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=7.1e-05 Score=81.05 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=88.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
.+.+.|+|+.|+|||+|++.++.... ..+++.. ....+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~----------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA----------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh----------------------hhc
Confidence 36789999999999999999887421 1233321 111111111 111
Q ss_pred ceEEEEEeCCCCcCccchhhhcccccC-CCCCcEEEEEccc---------HHHHHhhCCCCceeCCCCChhhHHHHHHHh
Q 000427 294 KKFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGSKIIVTTRN---------QEVAKIMGTVPAYQLKKLSDNDCLAVFVQH 363 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 363 (1521)
-+|++||+.... .+-+.+...+.. ...|..||+|++. +++...+....++++++++.++-.+++.++
T Consensus 89 --~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889995321 112233333321 2346779998873 444555566678999999999999999988
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 364 SLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
+-..+ ...+ +++..-|++++.|..-++..+-
T Consensus 166 ~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQ-LYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 73321 1112 4677778888888887776533
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00019 Score=88.45 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=111.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFN--LKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 264 (1521)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++......... ...|-.+.. -.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 468999999999999986542 245788999999999999999987321111100 000000000 011111
Q ss_pred HHHHhhcC----CCCCcccHHHHH---HHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-ccHH
Q 000427 265 ILTSIVAD----QNVDNLNLNSLQ---EKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-RNQE 335 (1521)
Q Consensus 265 i~~~~~~~----~~~~~~~~~~~~---~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 335 (1521)
|...-..+ ........+++. +.++. -..+++-++|+|++..-.....+.+...+.....++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11110000 000111223322 22211 123445579999996655555666776665555566666554 4444
Q ss_pred HHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 336 VAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 336 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
+...+ .....+++.+++.++....+.+.+-..+. ... .+.+..|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 43322 22357999999999999888877632221 111 3567789999999987665443
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00024 Score=86.54 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=111.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++........+. ..++.-..-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 367898888888888885432 2467788999999999999999874321110000 0011111111111
Q ss_pred HHhh-------cCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHH
Q 000427 267 TSIV-------ADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVA 337 (1521)
Q Consensus 267 ~~~~-------~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 337 (1521)
.... ........+.+.+.+.+.. -..+++-+||+|++..-....+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1100 0000001111122222211 12356679999999665555566777666543345556665544 4444
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh-HHHHHHHhhh
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP-LAAQTLGGLL 401 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 401 (1521)
..+ .....+++++++.++..+.+...+...+. .. -.+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 22357899999999999888876643221 11 1356778999999965 6777766554
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.89 E-value=6.3e-05 Score=88.90 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=99.1
Q ss_pred cCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLS-------NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDV 258 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 258 (1521)
..++.|++..++++.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 357899999999998877432110 1123456899999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC-----------ccchhhhccc---ccC--CC
Q 000427 259 IRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN-----------YDDWDQLRRP---FEV--GA 322 (1521)
Q Consensus 259 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~---l~~--~~ 322 (1521)
..+. ....+ .........+...-...+.+|++||++.-. ......+... +.. ..
T Consensus 190 ~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111 11100 011111222222223467899999985421 0011122222 211 12
Q ss_pred CCcEEEEEcccHHHHH-h----hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000427 323 PGSKIIVTTRNQEVAK-I----MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 323 ~gs~iivTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
.+.+||.||...+... . ......+.+...+.++..++|..++.+... ...-. ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 4677888887643221 1 122356899999999999999988744321 11122 345667776654
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00035 Score=86.51 Aligned_cols=194 Identities=15% Similarity=0.189 Sum_probs=108.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccc---ccee-EE-EEeCCCCCHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDH---FNLK-AW-TCVSDDFDVIRL 261 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~-~w-v~~~~~~~~~~~ 261 (1521)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..-.... +..+ .- .+....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 368899999999999996542 2466789999999999999999763211000 0000 00 0000000000
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEE-EEcccHHHHHh
Q 000427 262 TKTILTSIVADQNVDNLNLNSLQEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKII-VTTRNQEVAKI 339 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~~ 339 (1521)
.+.+.......+.+++.+.+... ..+++-++|+|++..-....+..+...+........+| +|++...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000000111122232222211 23566689999996655566777776665544455545 55555555433
Q ss_pred h-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 340 M-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 340 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
. .....+++.+++.++..+.+...+-..+. .. -.+.++.|++.++|.+.-+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~i---d~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI-SY---EKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22357999999999998888776532221 11 1345778999999977544433
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00035 Score=85.65 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=112.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++........+ +-.++. -..-+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~----C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGV----CESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccc----cHHHHHhh
Confidence 368999999999999986542 245678999999999999999986321111000 000000 00011111
Q ss_pred HH---------hhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE-EcccHH
Q 000427 267 TS---------IVADQNVDNLNLNSLQEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV-TTRNQE 335 (1521)
Q Consensus 267 ~~---------~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~ 335 (1521)
.. +........++..++.+.+... ..+++-++|+|++..-.....+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000111122222222111 134556889999977666677777777766555666555 444454
Q ss_pred HHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHHHhhh
Q 000427 336 VAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTLGGLL 401 (1521)
Q Consensus 336 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 401 (1521)
+.... .....+++.+++.++..+.+.+.+...+. ..+ .+.+..|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44332 22467999999999988888776533221 111 3456778999999885 444444443
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.3e-06 Score=91.56 Aligned_cols=176 Identities=14% Similarity=0.199 Sum_probs=115.8
Q ss_pred CCccEEEeccCCCchh-hhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchh--hhhhhcCCCCcce
Q 000427 1207 PSLKSLDVYRCSKLES-IAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLES--IAERLDNNTSLED 1283 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~ 1283 (1521)
+.|+.|||+.-.++.. +...+..|.+|+.|.|.++++...+...++.-.+|+.|+|++|.-... ..-.+.+|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4688888888777643 344566788888888888888877777777788888888888753322 1234678888888
Q ss_pred Eeecccccccccccc-CC-CCCCcceeecccCCCcc---cCCCCCCCccccceeeccccccccc-cccccCCCCccceEE
Q 000427 1284 IYISECENLKILPSG-LH-NLHQLREISVERCGNLV---SFPEGGLPCAKVTKLCIRWCKRLEA-LPKGLHNLTSVQELR 1357 (1521)
Q Consensus 1284 L~L~~n~~~~~~~~~-l~-~l~~L~~L~l~~n~~~~---~~p~~~~~~~~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~ 1357 (1521)
|+|+.|......-.. .. --+.|+.|+++|+...- .+.--...||+|..||+++|..... ....|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888876543211 11 13577778888764311 0111123578888888888765433 223567778888888
Q ss_pred ecC--CC-CC-cccCCCCcccceeeeccc
Q 000427 1358 IGG--EL-PS-LEEDGLPTKIQSLHIRGN 1382 (1521)
Q Consensus 1358 l~~--~~-~~-~~~~~~~~~L~~L~l~~n 1382 (1521)
++. .| |. +..+...+.|.+||+.++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 874 22 22 234556788888888887
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00029 Score=84.71 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=102.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
...+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... + ..+.+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~-~~~~~~~~~~~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------K-EIEQFKNEICQ 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------h-HHHHHHHHhcc
Confidence 45689999999999999999988321111112334443 3456666666654311 1 12233333332
Q ss_pred ceEEEEEeCCCCcCcc-ch-hhhcccccC-CCCCcEEEEEcccH---------HHHHhhCCCCceeCCCCChhhHHHHHH
Q 000427 294 KKFLLVLDDVWNRNYD-DW-DQLRRPFEV-GAPGSKIIVTTRNQ---------EVAKIMGTVPAYQLKKLSDNDCLAVFV 361 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 361 (1521)
.-+||+||+...... .+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 347889999543211 22 334333322 12455788887642 233334445678899999999999999
Q ss_pred HhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhh
Q 000427 362 QHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGL 400 (1521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 400 (1521)
+++-..+- . ..--+++..-|++.++|.|-.+..+...
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 88743211 0 0122577888999999999887766543
No 121
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=7.2e-05 Score=86.70 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=71.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++++.+...+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||.+++.++..+.+..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998653 4678899999999999999998544445678889999999888766543221
Q ss_pred HHhhcCCCCCccc-HHHHHHHHHHHh--CCceEEEEEeCCCCcC
Q 000427 267 TSIVADQNVDNLN-LNSLQEKLNKQL--SGKKFLLVLDDVWNRN 307 (1521)
Q Consensus 267 ~~~~~~~~~~~~~-~~~~~~~l~~~l--~~~~~LlVlDdv~~~~ 307 (1521)
- . .....- .....+.+.+.. .++++++|+|++...+
T Consensus 247 P----~-~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 P----N-GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred C----C-CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1 0 000000 011122222222 2468999999995543
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00033 Score=89.41 Aligned_cols=190 Identities=12% Similarity=0.092 Sum_probs=109.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++........... .+... ..-+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 368999999999999986542 23567899999999999999997643211110000 00000 0001110
Q ss_pred HH---------hhcCCCCCcccHHHHHH---HHH-HHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-c
Q 000427 267 TS---------IVADQNVDNLNLNSLQE---KLN-KQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-R 332 (1521)
Q Consensus 267 ~~---------~~~~~~~~~~~~~~~~~---~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R 332 (1521)
.. +... .....+++.+ .+. .-..+++-++|||++.......++.|...+..-...+.+|++| .
T Consensus 83 ~g~~~~~dv~eidaa---s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 83 PGGPGSLDVTEIDAA---SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred cCCCCCCcEEEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00 0000 0111222222 111 1123555678899997766667777877777655566666555 4
Q ss_pred cHHHHHhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 333 NQEVAKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 333 ~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
...+...+. ....|++..++.++..+++.+.+-..+ ... -.+....|++.++|.+..+.
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 444544332 346799999999998888876542222 111 13456779999999885443
No 123
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.0005 Score=81.79 Aligned_cols=182 Identities=14% Similarity=0.201 Sum_probs=102.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc------ccccee-EEEEeCCCCCHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL------DHFNLK-AWTCVSDDFDVI 259 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~ 259 (1521)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+..... ..|... +-+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 357899999999999985432 24688899999999999999997632110 112111 11111111111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-ccHHHHH
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-RNQEVAK 338 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~ 338 (1521)
+..+++++++.. .-..+++-++|+|++..-....++.+...+......+.+|++| ....+..
T Consensus 91 ~~i~~l~~~~~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 DDIRNLIDQVRI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred HHHHHHHHHHhh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111111111110 0112345579999985544344666655554433445555555 3333322
Q ss_pred h-hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 339 I-MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 339 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
. ......++++++++++....+...+...+- ..+ .+.+..|++.++|.+-.+.
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFE---DDALHIIAQKADGALRDAL 207 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhCCCCHHHHH
Confidence 2 122346899999999998888876643221 111 3667788899999776443
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00064 Score=82.00 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=109.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc--ccc----------------cc-ee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV--LDH----------------FN-LK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------f~-~~ 247 (1521)
.++||-+..++.+..++..+. -..+..++|+.|+||||+|+.+++..-. ... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 368999988999998885442 2456789999999999999988763110 000 00 01
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCC
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAP 323 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1521)
+++..+.. ...+++.+.+... ..+++-++|+|++..-..+..+.+...+.....
T Consensus 89 ~eldaas~----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 89 IEMDAASN----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEeccccc----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 11111111 1123333322211 124566889999976665666777766665556
Q ss_pred CcEEEEEcccH-HHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 324 GSKIIVTTRNQ-EVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 324 gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
.+++|++|.+. .+.... .....+++.+++.++..+.+.+.+-..+- .. -.+.+..|++.++|.+.-+...
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 67777666653 222111 12357899999999998888776533221 11 1356788999999999655544
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00079 Score=81.46 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=106.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc--cc-----------------cccee
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV--LD-----------------HFNLK 247 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~f~~~ 247 (1521)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.++..... .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999996542 2356678999999999999998763210 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcE
Q 000427 248 AWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSK 326 (1521)
Q Consensus 248 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 326 (1521)
+++..+... ...+.+.+.+.+.. -..+++-++|+|++..-.....+.+...+........
T Consensus 91 ~eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111110 01111222222211 1235667999999965544455666666655444555
Q ss_pred EEEEc-ccHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 327 IIVTT-RNQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 327 iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
+|++| +...+.... .....+.+.+++.++....+.+.+-..+-.. -.+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 443333221 2234689999999998888887663322111 13556778899999876555443
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00027 Score=88.35 Aligned_cols=197 Identities=14% Similarity=0.167 Sum_probs=110.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++......... -...++.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 368999999999988886532 235678999999999999999986321100000 000111112222222
Q ss_pred HHhhcCC---C-CCcccHHHH---HHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHH
Q 000427 267 TSIVADQ---N-VDNLNLNSL---QEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVA 337 (1521)
Q Consensus 267 ~~~~~~~---~-~~~~~~~~~---~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 337 (1521)
.....+. . ......+++ .+.+... ..+++-++|+|++..-..+..+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2111000 0 011112222 2222111 2245668999999654445566666665554455666665543 3343
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
... .....+++++++.++....+.+.+...+. ..+ .+.+..|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~---~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLE---PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 322 22356889999999988888776633221 111 3567889999999997655443
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=1.3e-06 Score=102.12 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=90.2
Q ss_pred cccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCcceeecccCCCcccCCC-CCCCccccceee
Q 000427 1255 RQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLREISVERCGNLVSFPE-GGLPCAKVTKLC 1333 (1521)
Q Consensus 1255 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~~L~~L~ 1333 (1521)
..|.+.+.++|.+.. +..+++-++.|+.|+|++|++.+. ..+..|+.|++|||+.|.+. .+|. .-..| .|..|.
T Consensus 164 n~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 357777778887643 445677788999999999998875 36788999999999999664 3443 33345 499999
Q ss_pred ccccccccccccccCCCCccceEEecCCCC-C---cccCCCCcccceeeecccc
Q 000427 1334 IRWCKRLEALPKGLHNLTSVQELRIGGELP-S---LEEDGLPTKIQSLHIRGNM 1383 (1521)
Q Consensus 1334 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~-~---~~~~~~~~~L~~L~l~~n~ 1383 (1521)
+++|.+... .++.+|.+|+.||++.++- . +...+.+..|+.|+|.+|+
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999988644 4678889999999986332 2 2334567788999999996
No 128
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.78 E-value=0.00068 Score=74.19 Aligned_cols=205 Identities=17% Similarity=0.143 Sum_probs=120.3
Q ss_pred ccccch---hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHH
Q 000427 188 KVYGRE---IEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL----DHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 188 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ 260 (1521)
.+||.. +.++.+.+.+..+ ...+.+-+.|||.+|+|||++++++...-... ..--.++.|.+...++...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 345543 3345555555443 44567789999999999999999998632110 0111467788888899999
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC-ceEEEEEeCCCCcC---ccchhhhccc---ccCCCCCcEEEEEccc
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG-KKFLLVLDDVWNRN---YDDWDQLRRP---FEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~---~~~~~~l~~~---l~~~~~gs~iivTtR~ 333 (1521)
+...|+.+++.... .......+.......++. +--+||+|++.+-- ..+-.++... +...-.-+-|.|-|++
T Consensus 112 ~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 112 FYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 99999999998765 334444544444444443 34489999996531 1122222222 3233334556677765
Q ss_pred HHHHHhh-----CCCCceeCCCCChh-hHHHHHHHhh--hCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 334 QEVAKIM-----GTVPAYQLKKLSDN-DCLAVFVQHS--LGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 334 ~~v~~~~-----~~~~~~~l~~L~~~-~~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
.--+-.. .-..++.++....+ |...|+.... ..-..+ ..-...++++.|...++|+.--+..+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 3222111 11245666666554 4455543322 111122 22334689999999999987555443
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.77 E-value=0.00032 Score=81.71 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=84.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.+...+.+..++..+. ...++.++|++|+||||+|+.+++.. ... ...++.+. .. ....++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHHH
Confidence 468999999999999986432 35678889999999999999998732 211 23344443 11 11111211
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEcccHHH-HHhh-CCC
Q 000427 267 TSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRNQEV-AKIM-GTV 343 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~-~~~ 343 (1521)
..+.... ...+.+-++|+||+... ..+..+.+...+.....++++|+||..... .... ...
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01134557899999544 222233344444444567788888875321 1111 112
Q ss_pred CceeCCCCChhhHHHHHHH
Q 000427 344 PAYQLKKLSDNDCLAVFVQ 362 (1521)
Q Consensus 344 ~~~~l~~L~~~~~~~lf~~ 362 (1521)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3567777777777665543
No 130
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=9.7e-05 Score=84.10 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=61.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCcccH-HHH----HHHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD--FDVIRLTKTILTSIVADQNVDNLNL-NSL----QEKL 287 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~-~~~----~~~l 287 (1521)
..++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+........... ..+ .+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 57899999999999999999986433 37999999999866 7899999998655443322111111 111 1111
Q ss_pred HH-HhCCceEEEEEeCC
Q 000427 288 NK-QLSGKKFLLVLDDV 303 (1521)
Q Consensus 288 ~~-~l~~~~~LlVlDdv 303 (1521)
.. .-.+++++|++|++
T Consensus 248 e~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHcCCCeEEEEECh
Confidence 11 13589999999999
No 131
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.75 E-value=0.00023 Score=76.05 Aligned_cols=185 Identities=18% Similarity=0.162 Sum_probs=112.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeE-EEEeCCCCCHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKA-WTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i 265 (1521)
.+++|-+..++.+...+... .......+|++|.|||+-|+.++...--.+.|.+++ =.++|...... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 46889999999998888653 357889999999999999998887432334555443 23444433222 1110
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHh--CCce-EEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhhC
Q 000427 266 LTSIVADQNVDNLNLNSLQEKLNKQL--SGKK-FLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIMG 341 (1521)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~ 341 (1521)
...+.+.+.....+.. ..++ =.||||++.....+.|..++..+......++.|+.+.. ..+..-..
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0111111111110000 1123 37889999888888999999888776666776555443 22222111
Q ss_pred -CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHH
Q 000427 342 -TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLA 393 (1521)
Q Consensus 342 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 393 (1521)
....|..++|.+++...-+...+-.++-..+ .+..+.|++.++|.---
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLRR 226 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHHH
Confidence 1245899999999998888777643332222 35567789999886543
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00069 Score=84.38 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc---------------------ccccc
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV---------------------LDHFN 245 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~ 245 (1521)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.++..... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368999999999999986542 2466889999999999999888763210 01222
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCC
Q 000427 246 LKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVG 321 (1521)
Q Consensus 246 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 321 (1521)
. ..+..+... ..+++...+.+. ..+++=++|+|++..-....++.+...+...
T Consensus 92 ~-~~ld~~~~~----------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 I-HELDAASNN----------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred e-EEecccccC----------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1 112211111 122222222111 1234558899999766556677777777665
Q ss_pred CCCcEEEE-EcccHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 322 APGSKIIV-TTRNQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 322 ~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
..++.+|+ ||+...+.... .....+++++++.++....+.+.+-..+- ... .+.+..|++.++|..--+..
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~---~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAE---PEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 55666655 44545554332 23357999999999998888876533221 111 35678899999997764443
No 133
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.1e-05 Score=59.41 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=30.2
Q ss_pred cccceeeccCCcccccccchhccccccEEecCCccchhhc
Q 000427 623 RYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKL 662 (1521)
Q Consensus 623 ~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~l 662 (1521)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4788999999999988888888999999999887 45544
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.00087 Score=75.50 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .+ +.....+.. .......+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a-~-- 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA-M-- 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc-c--
Confidence 4578999999999999999977321111111122455442 12 222221111 11122223322 2
Q ss_pred eEEEEEeCCCCc---------CccchhhhcccccCCCCCcEEEEEcccHHHHHhh--------CCCCceeCCCCChhhHH
Q 000427 295 KFLLVLDDVWNR---------NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIM--------GTVPAYQLKKLSDNDCL 357 (1521)
Q Consensus 295 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~ 357 (1521)
.-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 248999999531 0111223333444444556777777654432211 12346899999999999
Q ss_pred HHHHHhhh
Q 000427 358 AVFVQHSL 365 (1521)
Q Consensus 358 ~lf~~~~~ 365 (1521)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 88887763
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00036 Score=86.18 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=107.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE-eCCCCCHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTC-VSDDFDVIRLTKTI 265 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 265 (1521)
.++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+++.......++...|-. +....+.-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999988885432 235688999999999999999876322111111001110 00111111111111
Q ss_pred HHHhhcC----CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE-EcccHHH
Q 000427 266 LTSIVAD----QNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV-TTRNQEV 336 (1521)
Q Consensus 266 ~~~~~~~----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v 336 (1521)
...-... ........+++...+... ..+++-++|+|++..-.....+.+...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000111133333222111 234555789999966554556667766665444555554 4444444
Q ss_pred HHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000427 337 AKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAA 394 (1521)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 394 (1521)
...+ .....+++.+++.++....+.+.+...+. .. -.+.+..|++.++|..--+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I---~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QI---DADALQLIARKAQGSMRDA 225 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHH
Confidence 4332 23467999999999988777765532221 11 1356788999999966533
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00081 Score=83.73 Aligned_cols=198 Identities=14% Similarity=0.204 Sum_probs=109.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-.. ..+... ......-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 358899999999999886542 13567899999999999999998742111 110000 01111111222222
Q ss_pred HHhhcC----CCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHH
Q 000427 267 TSIVAD----QNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVA 337 (1521)
Q Consensus 267 ~~~~~~----~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 337 (1521)
.....+ ........+++.+.+... ..+++-++|+|++..-..+.++.+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111100 000112222332222211 1245568899999665555667777666554445555544443 3333
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
... .....+++..++.++....+.+.+-..+. ... .+.+..|++.++|.+..+....
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 222 22356888899999888777765532221 111 2557789999999886555443
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00063 Score=81.84 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=104.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc---------------------ccc
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD---------------------HFN 245 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 245 (1521)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999985432 236678999999999999999876321100 111
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCC
Q 000427 246 LKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPG 324 (1521)
Q Consensus 246 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1521)
.+++....... .++..++.+.+.. -..+++-++|+|++..-.....+.+...+.....+
T Consensus 92 -~~~i~g~~~~g-------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHRG-------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccCC-------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 11111100000 1111122221111 12355668899998544434455566666554446
Q ss_pred cEEEEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000427 325 SKIIVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTL 397 (1521)
Q Consensus 325 s~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 397 (1521)
..+|++|.. ..+.... .....++++++++++..+.+.+.+-..+. .. -++.+..|++.++|.+- |+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i---~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ET---SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 666666543 3332221 22356899999999988888776532221 11 13567889999999775 44433
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.68 E-value=0.00051 Score=77.02 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=79.8
Q ss_pred ccccchhHHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 000427 188 KVYGREIEKKDVVELLLR---------DDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDV 258 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 258 (1521)
.++|.+..++++.+.... ......+...-+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666533211 11112234566889999999999999999863211111111123333221
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC--------ccchhhhcccccCCCCCcEEEEE
Q 000427 259 IRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN--------YDDWDQLRRPFEVGAPGSKIIVT 330 (1521)
Q Consensus 259 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivT 330 (1521)
++. ....+ .........+.+. . .-+|++|++..-. .+..+.+...+........+|++
T Consensus 84 -~l~----~~~~g------~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DLV----GEYIG------HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hhh----hhhcc------chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 111 11110 1112222223222 1 2488999995421 01223333333333333455566
Q ss_pred cccHHHHH------hh--CCCCceeCCCCChhhHHHHHHHhhh
Q 000427 331 TRNQEVAK------IM--GTVPAYQLKKLSDNDCLAVFVQHSL 365 (1521)
Q Consensus 331 tR~~~v~~------~~--~~~~~~~l~~L~~~~~~~lf~~~~~ 365 (1521)
+...+... .. .....+++++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54432211 00 1123578899999999998887763
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.00092 Score=80.49 Aligned_cols=160 Identities=14% Similarity=0.189 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--NLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
...+.|+|..|+|||+||+++++.. .... ..++++++ .++..++...+... ..+... +.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~~----~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEFK----EKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHHH----HHH
Confidence 4568999999999999999999843 2222 23455543 33444455544321 122222 222
Q ss_pred CCceEEEEEeCCCCcCccch--hhhcccccC-CCCCcEEEEEccc-HH--------HHHhhCCCCceeCCCCChhhHHHH
Q 000427 292 SGKKFLLVLDDVWNRNYDDW--DQLRRPFEV-GAPGSKIIVTTRN-QE--------VAKIMGTVPAYQLKKLSDNDCLAV 359 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~l 359 (1521)
++ .-+||+||+.......+ +.+...+.. ...|..+|+|+.. .. +...+.....+++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 23889999964321211 223332221 1234567777764 22 222223334689999999999999
Q ss_pred HHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 360 FVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
+.+.+-.... .-+ +++...|++.+.|.+-.+.-
T Consensus 277 l~~~~~~~~~-~l~---~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 277 LQKKAEEEGL-ELP---DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHH
Confidence 9988743221 111 46777788888887765443
No 140
>PF14516 AAA_35: AAA-like domain
Probab=97.63 E-value=0.007 Score=70.19 Aligned_cols=201 Identities=15% Similarity=0.116 Sum_probs=117.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-----CCHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-----FDVIRL 261 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~ 261 (1521)
+..|+|...-+++.+.+..+. ..+.|.|+-.+|||+|...+.+..+. ..| .++++++... .+..+.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 345688866677777775532 58999999999999999999874432 234 3457776542 246666
Q ss_pred HHHHHHHhhcCCCCC----------cccHHHHHHHHHHHh---CCceEEEEEeCCCCcCc------cchhhhcccccCCC
Q 000427 262 TKTILTSIVADQNVD----------NLNLNSLQEKLNKQL---SGKKFLLVLDDVWNRNY------DDWDQLRRPFEVGA 322 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~----------~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~------~~~~~l~~~l~~~~ 322 (1521)
++.++..+...-..+ ..........+.+.+ .+++.+|++|+|..-.. +-+..++.......
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 666666554432211 111222233343332 26899999999954211 11122222111100
Q ss_pred ----CCc--EEEEEcccHHHHHhh-----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000427 323 ----PGS--KIIVTTRNQEVAKIM-----GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 323 ----~gs--~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
... -|++.+......... .....++|++++.+|...|..++-.. .. .+..++|...+||+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCH
Confidence 111 222222111111111 11246899999999999999876421 11 123888999999999
Q ss_pred HHHHHHHhhhCCC
Q 000427 392 LAAQTLGGLLRGN 404 (1521)
Q Consensus 392 Lai~~~~~~l~~~ 404 (1521)
.-+..++..+..+
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999763
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.62 E-value=0.00087 Score=71.95 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=80.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h-------hHHh-c
Confidence 6789999999999999999887431 1 1111 0000 0 0 0011 2
Q ss_pred eEEEEEeCCCCcCccchh--hhcccccC-CCCCcEEEEEcccH-------HHHHhhCCCCceeCCCCChhhHHHHHHHhh
Q 000427 295 KFLLVLDDVWNRNYDDWD--QLRRPFEV-GAPGSKIIVTTRNQ-------EVAKIMGTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
.-++++||+. .|. .+...+.. ...|..||+|++.. +....+...-++++++++.++-.+++.+.+
T Consensus 86 ~d~lliDdi~-----~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 86 YNAFIIEDIE-----NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CCEEEEeccc-----cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 2478889994 332 22222111 13566899998742 233444555689999999999888887776
Q ss_pred hCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 365 LGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
...+ ..-+ +++..-|++++.|.--.+.-+
T Consensus 161 ~~~~-l~l~---~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 161 SISS-VTIS---RQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred HHcC-CCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 3211 1111 467777888887766555443
No 142
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.60 E-value=0.00025 Score=83.96 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=88.3
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
.++.|++..++++.+.+...-. .+-..++-|.++|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 4789999999999887632110 01234567899999999999999999983 2222 222211 1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC-----------ccchhhhcccc---cC--CCC
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN-----------YDDWDQLRRPF---EV--GAP 323 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~~ 323 (1521)
.+ .....+ .....+...+...-...+.+|++||+..-. ...+..+...+ .. ...
T Consensus 200 ~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 EL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11 111110 111112222222223467899999994310 01111222222 11 123
Q ss_pred CcEEEEEcccHHHHHh--h---CCCCceeCCCCChhhHHHHHHHhhh
Q 000427 324 GSKIIVTTRNQEVAKI--M---GTVPAYQLKKLSDNDCLAVFVQHSL 365 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~ 365 (1521)
+.+||.||...+.... . .....++++..+.++-.++|+.++.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 5677878776433221 1 1235689999999999999988764
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.59 E-value=0.0013 Score=74.28 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCce
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKK 295 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1521)
-+.++|++|+|||++|+.++......+.....-|+.++. .+ ++..+.+.. .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc------hHHHHHHHHHc---cC
Confidence 578999999999999987776321111111223454442 11 222222211 11222233322 23
Q ss_pred EEEEEeCCCCc---------CccchhhhcccccCCCCCcEEEEEcccHHHHHhh--------CCCCceeCCCCChhhHHH
Q 000427 296 FLLVLDDVWNR---------NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIM--------GTVPAYQLKKLSDNDCLA 358 (1521)
Q Consensus 296 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 358 (1521)
-+|++|++..- ..+.++.+...+.....+.+||+++......... .....+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999521 0112334444444444566777776543222111 113468999999999999
Q ss_pred HHHHhh
Q 000427 359 VFVQHS 364 (1521)
Q Consensus 359 lf~~~~ 364 (1521)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 988776
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=0.00049 Score=88.86 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=84.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccccc-ceeEEEEeCCCCCHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQ---VLDHF-NLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 262 (1521)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|.. +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH-
Confidence 368999999999999886542 23457999999999999999987421 11111 2334321 11111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCcC---------ccchhhhcccccCCCCCcEEEEEcc
Q 000427 263 KTILTSIVADQNVDNLNLNSLQEKLNKQL-SGKKFLLVLDDVWNRN---------YDDWDQLRRPFEVGAPGSKIIVTTR 332 (1521)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtR 332 (1521)
... .. ...+.++....+.+.+ +.++.+|++|++..-. .+.-+.+...+.. + .-++|-+|.
T Consensus 250 ---~a~---~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt 319 (731)
T TIGR02639 250 ---LAG---TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTT 319 (731)
T ss_pred ---hhh---cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecC
Confidence 110 00 0111222222222222 3467899999985211 0111223322222 1 234555554
Q ss_pred cHHHHHh-------hCCCCceeCCCCChhhHHHHHHHhh
Q 000427 333 NQEVAKI-------MGTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 333 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
..+.... ......+++++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3222111 1123578999999999999998654
No 145
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=2.7e-05 Score=81.91 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=103.9
Q ss_pred CCCccEEEeccCCCch--hhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhh-hhhhcCCCCcc
Q 000427 1206 PPSLKSLDVYRCSKLE--SIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESI-AERLDNNTSLE 1282 (1521)
Q Consensus 1206 p~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~ 1282 (1521)
.+.+++|||..|.+.. .+...+.++|.|++|+|+.|++...+-..=..+.+|++|.|.+..+.-.. ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3689999999999874 45667889999999999999886554322135678999999888765332 33456788888
Q ss_pred eEeecccccccccc--c----------cCCCCCCcceeecccCCCcccCCCCCCCccccceeecccccccccc-ccccCC
Q 000427 1283 DIYISECENLKILP--S----------GLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEAL-PKGLHN 1349 (1521)
Q Consensus 1283 ~L~L~~n~~~~~~~--~----------~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~-p~~l~~ 1349 (1521)
+|+++.|......- . .++.++.+..++.+-|.....+ |++..+-+..|++...- ..++..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F-------pnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF-------PNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc-------ccchheeeecCcccchhhcccCCC
Confidence 88888885432110 1 1222333333333334333333 46777777777764322 234555
Q ss_pred CCccceEEecC-CCC---CcccCCCCcccceeeecccc
Q 000427 1350 LTSVQELRIGG-ELP---SLEEDGLPTKIQSLHIRGNM 1383 (1521)
Q Consensus 1350 l~~L~~L~l~~-~~~---~~~~~~~~~~L~~L~l~~n~ 1383 (1521)
++.+..|+|+. +|- ++.....+++|..|.+++|+
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 55666666653 222 22333455566666666663
No 146
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0012 Score=82.11 Aligned_cols=195 Identities=15% Similarity=0.180 Sum_probs=106.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++||.+..++.+..++.... -...+.++|+.|+||||+|+.+++........+. ...+.-..-++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 368999999999999885542 2356789999999999999998763211110000 0000000111110
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEE-EcccHHHH
Q 000427 267 TS-------IVADQNVDNLNLNSLQEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIV-TTRNQEVA 337 (1521)
Q Consensus 267 ~~-------~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 337 (1521)
.. +.+.......+.+++.+.+... ..+++-++|+|++..-.....+.+...+........+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111122222222111 134455789999966555556667766655445566654 54445454
Q ss_pred HhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH-HHHHH
Q 000427 338 KIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL-AAQTL 397 (1521)
Q Consensus 338 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 397 (1521)
.... ....+++++++.++....+...+-..+. ... .+.+..|+++++|..- |+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 2356889999999988777665422221 111 3566779999999764 44444
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.57 E-value=0.0016 Score=68.92 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=72.9
Q ss_pred cccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 184 VKEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 184 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
+.-..++|.|.+++.|++-...-- .+....-+.+||..|+|||++++++.+...-++ .+ -|.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH--------
Confidence 345679999999988877543221 122345677899999999999999987322111 11 1222211
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC-cCccchhhhcccccCC---CC-CcEEEEEcccHHH
Q 000427 264 TILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWN-RNYDDWDQLRRPFEVG---AP-GSKIIVTTRNQEV 336 (1521)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~-gs~iivTtR~~~v 336 (1521)
+-.++..+.+.++. ...||+|.+||+-- +....+..++..+..+ .+ ...|..||..++.
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 22344444444442 35799999999832 2334566666655432 23 3344455554444
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0023 Score=78.75 Aligned_cols=195 Identities=15% Similarity=0.145 Sum_probs=110.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..-....... ..+....+- +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 368999999999999996542 2467889999999999999999874211110000 001110011 1111
Q ss_pred HHhhcC----CCCCcccHHHHHH---HHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHH
Q 000427 267 TSIVAD----QNVDNLNLNSLQE---KLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVA 337 (1521)
Q Consensus 267 ~~~~~~----~~~~~~~~~~~~~---~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 337 (1521)
..-... ........++..+ .+.. -..+++-++|+|++..-....++.+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 100000 0000112222222 1111 12355668999999766556677777776655556666665543 3443
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
... .....+++++++.++..+.+.+.+...+... -.+.+..|++.++|.+..+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 2234689999999998888877664322111 1356777999999988655443
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.00087 Score=80.27 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=87.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
....+.|+|+.|+|||+||+++++.. ...-..+++++. ..+...+...+... .. ..+++.++
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~------~~----~~f~~~~~ 201 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG------EM----QRFRQFYR 201 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc------hH----HHHHHHcc
Confidence 34678899999999999999999843 222233445542 33444444444321 11 22333333
Q ss_pred CceEEEEEeCCCCcCccch--hhhcccccC-CCCCcEEEEEccc-H--------HHHHhhCCCCceeCCCCChhhHHHHH
Q 000427 293 GKKFLLVLDDVWNRNYDDW--DQLRRPFEV-GAPGSKIIVTTRN-Q--------EVAKIMGTVPAYQLKKLSDNDCLAVF 360 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtR~-~--------~v~~~~~~~~~~~l~~L~~~~~~~lf 360 (1521)
. .-+|++||+.......| +.+...+.. ...|..||+||.. + .+...+.....+.+.+++.++-.+++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34788899855322222 223332211 1135568888854 2 22233334467899999999999999
Q ss_pred HHhhhCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000427 361 VQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
.+++-..+ ..-+ +++..-|++.+.|.-
T Consensus 281 ~~k~~~~~-~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALS-IRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhcCCCH
Confidence 88874322 1111 345555666666543
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=4.5e-05 Score=80.27 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=52.2
Q ss_pred CCCcceEeecccccccc-ccccCCCCCCcceeecccCCCcc-cCCCCCCCccccceeecccccccccccc------ccCC
Q 000427 1278 NTSLEDIYISECENLKI-LPSGLHNLHQLREISVERCGNLV-SFPEGGLPCAKVTKLCIRWCKRLEALPK------GLHN 1349 (1521)
Q Consensus 1278 l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~~~~~~p~------~l~~ 1349 (1521)
++++..+.+..|++.+. ...++..+|.+--|+|+.|++-. .--..+..+++|..|.+++||+...+.. -++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 46777777777776553 22446667777777777775521 1112455677888888888887654422 3567
Q ss_pred CCccceEEec
Q 000427 1350 LTSVQELRIG 1359 (1521)
Q Consensus 1350 l~~L~~L~l~ 1359 (1521)
|++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7778877654
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.0015 Score=78.59 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=93.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccc-cc-eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDH-FN-LKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
...+.|+|.+|+|||+||+++++.. ... .. .++|+++ .++..++...+... ..++ +++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l--~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 4568999999999999999999843 232 22 4556654 34555555554321 1222 22333
Q ss_pred CCceEEEEEeCCCCcCc-cch-hhhcccccC-CCCCcEEEEEcc-cHHH--------HHhhCCCCceeCCCCChhhHHHH
Q 000427 292 SGKKFLLVLDDVWNRNY-DDW-DQLRRPFEV-GAPGSKIIVTTR-NQEV--------AKIMGTVPAYQLKKLSDNDCLAV 359 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~l 359 (1521)
..+.-+|++||+..... ..+ +++...+.. ...|..||+||. .+.- ...+.....+.+++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 33455899999964211 111 233332221 123456888875 3221 12233345789999999999999
Q ss_pred HHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 360 FVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
+.+.+.... ..-+ ++++..|++.+.|.--.+.-
T Consensus 272 L~~~~~~~~-~~l~---~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 272 ARKMLEIEH-GELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHhcC-CCCC---HHHHHHHHhccccCHHHHHH
Confidence 988874221 1112 46778888888886554443
No 152
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.0022 Score=70.83 Aligned_cols=167 Identities=22% Similarity=0.264 Sum_probs=103.6
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
++.|.+|+.++..+...+.... ..-+..|-|+|-.|.|||.+.+++.+... ...+|+++-+.++...++.+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 4568899999999998885542 22355668999999999999999998541 246899999999999999999
Q ss_pred HHHhh-cCCCCCc-----ccHHHHHHHHHH--HhC--CceEEEEEeCCCCcCccchhhhc-c-c--cc--CCCCCcEEEE
Q 000427 266 LTSIV-ADQNVDN-----LNLNSLQEKLNK--QLS--GKKFLLVLDDVWNRNYDDWDQLR-R-P--FE--VGAPGSKIIV 329 (1521)
Q Consensus 266 ~~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~l~-~-~--l~--~~~~gs~iiv 329 (1521)
+.+.. .+.+... .+..+....+.+ ... ++.++||||++..- .+.+.+. . . +. ...+...|+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985 2222111 222233333333 222 46899999999432 2222211 1 0 11 1122333333
Q ss_pred Eccc-HHH-HHhhCCC--CceeCCCCChhhHHHHHHH
Q 000427 330 TTRN-QEV-AKIMGTV--PAYQLKKLSDNDCLAVFVQ 362 (1521)
Q Consensus 330 TtR~-~~v-~~~~~~~--~~~~l~~L~~~~~~~lf~~ 362 (1521)
..-. +.. ...+|.. .++..+.-+.+|-.+++.+
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2222 222 2223443 3467788899999888864
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.51 E-value=0.00064 Score=88.21 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc---cc-ccceeEE-EEeCCCCCHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV---LD-HFNLKAW-TCVSDDFDVIRL 261 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~w-v~~~~~~~~~~~ 261 (1521)
..+|||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++...- .. -.+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999986543 234569999999999999999874211 10 1122333 22211
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCcC-------ccchhhhcccccCCCCCcEEEEEccc
Q 000427 262 TKTILTSIVADQNVDNLNLNSLQEKLNKQL-SGKKFLLVLDDVWNRN-------YDDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtR~ 333 (1521)
+.........-.+.+...+.+.- .+++.+|++|++..-. ..+-..+..+....+ .-++|-||..
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~ 325 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTW 325 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCH
Confidence 00000000111122222222221 2468999999985421 112112222222221 3466666665
Q ss_pred HHHHHhh-------CCCCceeCCCCChhhHHHHHHHhh
Q 000427 334 QEVAKIM-------GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
.+..... .....+.+++++.++..+++....
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 4332111 223579999999999999975443
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=6.4e-06 Score=76.30 Aligned_cols=96 Identities=19% Similarity=0.255 Sum_probs=52.6
Q ss_pred eeEEEEcCccccccCc---cccCCcccceeeccCCcccccccchh-ccccccEEecCCccchhhccccccccCCCceecc
Q 000427 602 LRVFSLRGYHIYELPD---SIGDLRYLRYLNLSGTRIITLPESVN-TLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLNN 677 (1521)
Q Consensus 602 Lr~L~L~~~~i~~lp~---~i~~L~~Lr~L~Ls~~~i~~lP~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 677 (1521)
+..+||+.|.+..+++ .+....+|...+|++|.+++.|+.+. +.+.+.+|++++| .+.++|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 3445555555544433 23444555555666666666665553 3335666666654 55666666666666666666
Q ss_pred cCCCCcccccCCCCCCCccccc
Q 000427 678 SYTGSLEEMPLGFGKLTCLQTL 699 (1521)
Q Consensus 678 ~~~~~~~~~p~~i~~L~~L~~L 699 (1521)
+.|. +...|.-|..|.+|..|
T Consensus 108 ~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 108 RFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred ccCc-cccchHHHHHHHhHHHh
Confidence 6655 55555555555554444
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.48 E-value=0.0016 Score=79.46 Aligned_cols=161 Identities=13% Similarity=0.185 Sum_probs=93.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--NLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (1521)
....+.|+|..|+|||+||+++++. ....+ ..++++++ .++..++...+... ..+. +.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~----~~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TMEE----FKEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHHH----HHHH
Confidence 3456899999999999999999984 33333 23445544 23334444444211 1222 2233
Q ss_pred hCCceEEEEEeCCCCcCccc-h-hhhcccccC-CCCCcEEEEEcccH---------HHHHhhCCCCceeCCCCChhhHHH
Q 000427 291 LSGKKFLLVLDDVWNRNYDD-W-DQLRRPFEV-GAPGSKIIVTTRNQ---------EVAKIMGTVPAYQLKKLSDNDCLA 358 (1521)
Q Consensus 291 l~~~~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 358 (1521)
++ +.-+||+||+......+ + +.+...+.. ...|..||+||... .+...+....++++++.+.++-.+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 33 23489999995432111 1 233332221 12344578877642 122333444579999999999999
Q ss_pred HHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 359 VFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 359 lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
++.+++-..+ ...+ +++...|++.++|..-.+.-
T Consensus 288 il~~~~~~~~-~~l~---~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 288 ILKKKAEEEG-IDLP---DEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHHHcC-CCCC---HHHHHHHHcCcCCCHHHHHH
Confidence 9998874321 1112 36778899999988765443
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0037 Score=77.51 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=106.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++.......-+ ..+.+.-..-+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 246677899999999999999876311100000 00111111111111
Q ss_pred HHhh-------cCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEc-ccHHHH
Q 000427 267 TSIV-------ADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTT-RNQEVA 337 (1521)
Q Consensus 267 ~~~~-------~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 337 (1521)
.... ...........++.+.+.. -..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1000 0000011112222222211 123556688999996655556666766665444455555444 444333
Q ss_pred Hhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 338 KIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
... .....+++.+++.++....+...+-..+- ... .+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 222 22346889999999988888776632221 111 3557778889998876544
No 157
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0028 Score=67.27 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=102.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+|||-++-++++.-++..... .+..+--|.++|++|.||||||.-+++. ....+. ++.+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 4799999999988777755433 5566788999999999999999999984 322221 22111112122222333
Q ss_pred HHhhcCCCCCcccHHH----HHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHhhC-
Q 000427 267 TSIVADQNVDNLNLNS----LQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKIMG- 341 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~- 341 (1521)
..+....-.-.++... ..+.+.-.+.+-+.=|++.--- .-..+.-.++. =+-|=-|||.-.+..-..
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp-----~Arsv~ldLpp---FTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGP-----AARSIRLDLPP---FTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCC-----ccceEeccCCC---eeEeeeccccccccchhHH
Confidence 3322111000011111 1112222222322222222210 00111111221 123446888654433221
Q ss_pred -CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhC
Q 000427 342 -TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLR 402 (1521)
Q Consensus 342 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 402 (1521)
..-+.+++--+.+|-.+...+.+---. .. --++.+.+|+++..|-|--+.-+-+..+
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~---i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILG-IE---IDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhC-CC---CChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 123578888899998888888762111 11 1246688999999999976555444443
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=1.1e-05 Score=74.68 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=91.6
Q ss_pred CccEEEeccCCCchh--hhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEe
Q 000427 1208 SLKSLDVYRCSKLES--IAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIY 1285 (1521)
Q Consensus 1208 ~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 1285 (1521)
.+..++|+.|++... .+..+.....|...+|++|.+....+..-..++.++.|++++|.+++. |..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 577788999987532 123344566788889999987754444334566899999999998765 45588999999999
Q ss_pred eccccccccccccCCCCCCcceeecccCCCcccCCCCCCCccccceeeccccccccccc
Q 000427 1286 ISECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALP 1344 (1521)
Q Consensus 1286 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~~~~~~p 1344 (1521)
++.|++.. .|..+..|.+|-.|+..+|.... +|..+.-....-..++.++++.+.-+
T Consensus 107 l~~N~l~~-~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLNA-EPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCcccc-chHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCc
Confidence 99999876 56666668888899988886643 33333222334444556666655444
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0022 Score=73.57 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDF 370 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 370 (1521)
+++-++|+|++..-+......+...+.....++.+|+||.+. .+.... .-...+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 334455679997766667777777776655677777777764 333222 223569999999999998887653 111
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 371 SSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
. .+.+..++..++|.|+.+..+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 234567789999999866554
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.44 E-value=0.0046 Score=75.27 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=92.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--NLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
...+.|+|..|+|||.|++++++.. ...+ ..+++++. .++..++...+... ..+. +++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a--~~~~~g~~V~Yita------eef~~el~~al~~~------~~~~----f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYA--RRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGDS----FRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHHH----HHHHh
Confidence 3458999999999999999999843 2222 23455543 33444444443211 1122 22333
Q ss_pred CCceEEEEEeCCCCcCcc-chh-hhcccccC-CCCCcEEEEEcccH---------HHHHhhCCCCceeCCCCChhhHHHH
Q 000427 292 SGKKFLLVLDDVWNRNYD-DWD-QLRRPFEV-GAPGSKIIVTTRNQ---------EVAKIMGTVPAYQLKKLSDNDCLAV 359 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 359 (1521)
.+ -=+|||||+...... .|. .+...+.. ...|..|||||+.. .+...+...-+++|++.+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 32 247889999654222 232 23332221 12355688888752 2333444556799999999999999
Q ss_pred HHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 360 FVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 360 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
+.+++....- ..+ ++++.-|++++.+..-.+.
T Consensus 455 L~kka~~r~l-~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 455 LRKKAVQEQL-NAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHhcCC-CCC---HHHHHHHHHhccCCHHHHH
Confidence 9988743221 111 3666777777776654443
No 161
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.003 Score=72.05 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=109.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-------------ccccceeEEEEeCC
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV-------------LDHFNLKAWTCVSD 254 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~ 254 (1521)
+++|.+..++.+...+..+. -.....++|+.|+||+++|..+++..-. .....-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 57899999999999986542 2478899999999999999887653110 11112234443110
Q ss_pred CCCHHHHHHHHHHHhhcC-CCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEE
Q 000427 255 DFDVIRLTKTILTSIVAD-QNVDNLNLNSLQEKLNKQL-----SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKII 328 (1521)
Q Consensus 255 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 328 (1521)
..+-..+-..-++..+.. .....-..++.. .+.+.+ .+++-++|+|++...+......+...+...+ .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000000001111111100 000111222322 233332 3566789999996655556666776665444 34455
Q ss_pred -EEcccHHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 329 -VTTRNQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 329 -vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
+|++...+.... .....+++.++++++..+.+.+..... . .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~--~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----I--LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----c--chhHHHHHHHHcCCCHHHHHHHH
Confidence 444444443332 234679999999999999998764111 0 01113578999999997765543
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.38 E-value=0.0012 Score=86.54 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=84.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc---ccccc-ceeEEEEeCCCCCHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQ---VLDHF-NLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 262 (1521)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|.- +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH-
Confidence 458999999999999996542 23456999999999999999987421 11111 2344431 12111
Q ss_pred HHHHHHhhcCCCCCcccHHH-HHHHHHHHhCCceEEEEEeCCCCc-------CccchhhhcccccCCCCCcEEEEEcccH
Q 000427 263 KTILTSIVADQNVDNLNLNS-LQEKLNKQLSGKKFLLVLDDVWNR-------NYDDWDQLRRPFEVGAPGSKIIVTTRNQ 334 (1521)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 334 (1521)
+ .+... . .+.++ +...+.+.-..++.+|++|++..- ...+...+..+....+ .-++|.+|...
T Consensus 247 ---~---ag~~~-~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ 317 (821)
T CHL00095 247 ---L---AGTKY-R-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLD 317 (821)
T ss_pred ---h---ccCCC-c-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHH
Confidence 1 11111 1 11222 223333333456899999999421 0011222222221221 24566666655
Q ss_pred HHHHhh-------CCCCceeCCCCChhhHHHHHHH
Q 000427 335 EVAKIM-------GTVPAYQLKKLSDNDCLAVFVQ 362 (1521)
Q Consensus 335 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~ 362 (1521)
+..... ....++.+...+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 443221 2235678888888888887764
No 163
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.38 E-value=0.0023 Score=83.13 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=39.1
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+.+++|.+..++++.+++......+....+++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999988775321112223358999999999999999999983
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0021 Score=74.04 Aligned_cols=191 Identities=18% Similarity=0.188 Sum_probs=104.3
Q ss_pred cCccccchhHHHHH-HHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 186 EAKVYGREIEKKDV-VELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l-~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
+..++|-......- ....... .+.....+.|+|..|.|||.|++++.+. ..........+.++ .+....+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHH
Confidence 45566765444322 2222222 2235788999999999999999999983 44444422223332 2333444
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCc-cchh-hhcccccC-CCCCcEEEEEccc--------
Q 000427 265 ILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNY-DDWD-QLRRPFEV-GAPGSKIIVTTRN-------- 333 (1521)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtR~-------- 333 (1521)
++..+... -.+.+++.. .-=++++||++--.. +.|+ ++...|.. ...|-.||+|++.
T Consensus 158 ~v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 158 FVKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 44433321 123344444 233889999965321 1222 23333322 1234489999965
Q ss_pred -HHHHHhhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 334 -QEVAKIMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 334 -~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
+++...+...-++++.+.+.+.....+.+++...+-.-+++...-+++.+-+-..-+.-|+..+
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3445555666789999999999999999877433322233333334444333333344444333
No 165
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.28 E-value=0.00055 Score=68.04 Aligned_cols=68 Identities=21% Similarity=0.108 Sum_probs=39.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC-ce
Q 000427 217 IPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG-KK 295 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 295 (1521)
|.|+|++|+||||+|+.++++. ..+ .+.++.+.-.+. ........+...+.+.-+. ++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---cccccccccccc----------------cccccccccccccccccccccc
Confidence 5799999999999999999843 211 234443321100 0122233333344443333 48
Q ss_pred EEEEEeCCCC
Q 000427 296 FLLVLDDVWN 305 (1521)
Q Consensus 296 ~LlVlDdv~~ 305 (1521)
.+|++||+..
T Consensus 60 ~vl~iDe~d~ 69 (132)
T PF00004_consen 60 CVLFIDEIDK 69 (132)
T ss_dssp EEEEEETGGG
T ss_pred eeeeeccchh
Confidence 9999999954
No 166
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.00032 Score=70.29 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=39.7
Q ss_pred CccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeeccccccccc-cccCCCCCCcceeec
Q 000427 1232 SLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKIL-PSGLHNLHQLREISV 1310 (1521)
Q Consensus 1232 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l 1310 (1521)
+...+||++|.+... ..|..++.|.+|.|++|+++.+-|..-.-+++|+.|.|.+|.+.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666655433 23445555556666665555554444444455555555555543321 012334444444444
Q ss_pred ccCCC
Q 000427 1311 ERCGN 1315 (1521)
Q Consensus 1311 ~~n~~ 1315 (1521)
-+|+.
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 44443
No 167
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.27 E-value=0.0038 Score=80.11 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=87.6
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
+...+|.++.+++|.+++......+.....++.++|++|+||||+|+.++.. ....|- -+.++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 5678999999999999886422111223468999999999999999999972 322332 23344333332221110
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccc----hhhhcccccC---------------CCCCcE
Q 000427 266 LTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDD----WDQLRRPFEV---------------GAPGSK 326 (1521)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~ 326 (1521)
.... .. ....+...+.+. ....-+|+||.+..-..+. ...+...+.. .-.+.-
T Consensus 396 -~~~~-----g~-~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 -RTYI-----GS-MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred -hccC-----CC-CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 0000 01 112233333332 2233478899985432211 1223322211 112334
Q ss_pred EEEEcccHHHHHhh-CCCCceeCCCCChhhHHHHHHHhh
Q 000427 327 IIVTTRNQEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 327 iivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
+|.|+....+.... .-..++.+.+++.+|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44555443221111 223568889999888877776654
No 168
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.27 E-value=0.0013 Score=77.84 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=87.7
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
.++.|.+.+++++.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 3568999999888887642100 01123456889999999999999999984 33333 1121111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC--------ccc------hhhhcccccC--CCC
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN--------YDD------WDQLRRPFEV--GAP 323 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~~ 323 (1521)
+ .....+ .....+...+.....+.+.+|+||++..-. ..+ ..++...+.. ...
T Consensus 253 -L----~~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -L----IQKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -h----hhhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1 111110 111122233333334567899999973210 000 0111111111 123
Q ss_pred CcEEEEEcccHHHHHhh-----CCCCceeCCCCChhhHHHHHHHhhh
Q 000427 324 GSKIIVTTRNQEVAKIM-----GTVPAYQLKKLSDNDCLAVFVQHSL 365 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~ 365 (1521)
+.+||+||...+..... .....+++...+.++..++|..++.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 56788888865543321 1235689999999999999987763
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.0031 Score=82.82 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=83.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDH----FNLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~ 262 (1521)
..+|||+.++++++..|.... ..-+.++|.+|+|||++|+.++....-... ....+|.. ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 358999999999999996542 244568999999999999998874211100 12233321 11111
Q ss_pred HHHHHHhhcCCCCCcccHH-HHHHHHHHHhC-CceEEEEEeCCCCcC-----c--cchhhhcccccCCCCCcEEEEEccc
Q 000427 263 KTILTSIVADQNVDNLNLN-SLQEKLNKQLS-GKKFLLVLDDVWNRN-----Y--DDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~~~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~iivTtR~ 333 (1521)
+. +... . .+.+ .+...+.+.-+ +++.+|++|++..-. . .+...+..+....+ .-++|-+|..
T Consensus 241 ---~a---~~~~-~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~ 311 (852)
T TIGR03346 241 ---IA---GAKY-R-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTL 311 (852)
T ss_pred ---hh---cchh-h-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcH
Confidence 10 0000 1 1122 22222322222 468999999995321 0 01112222222222 2455555554
Q ss_pred HHHHHhh-------CCCCceeCCCCChhhHHHHHHHhh
Q 000427 334 QEVAKIM-------GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
.+....+ .....+.+...+.++..+++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4432211 223568889889999998887653
No 170
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.0017 Score=80.14 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=40.9
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
-.+++|-++.++++..|+..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999865432 2223468999999999999999999974
No 171
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.19 E-value=0.0046 Score=74.36 Aligned_cols=167 Identities=12% Similarity=0.132 Sum_probs=89.1
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc---cccceeEEEEeCCCC
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL---DHFNLKAWTCVSDDF 256 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~ 256 (1521)
.++.|.+..++++.+.+..+-. -+-..++-+.++|++|+|||++|+++++..... .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4577899999988887642100 011234568999999999999999999843211 01123344444331
Q ss_pred CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCcC-------ccch-----hhhcccccCC--
Q 000427 257 DVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ-LSGKKFLLVLDDVWNRN-------YDDW-----DQLRRPFEVG-- 321 (1521)
Q Consensus 257 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~-- 321 (1521)
+++....+. .......+....++. -.+++++|+||+++.-. ..+. .++...+...
T Consensus 261 -------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 -------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred -------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111111000 001111222222221 23578999999995320 0111 2233333221
Q ss_pred CCCcEEEEEcccHHHHHh--h---CCCCceeCCCCChhhHHHHHHHhh
Q 000427 322 APGSKIIVTTRNQEVAKI--M---GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 322 ~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
..+..||.||...+.... . .-...++++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 134456666655443221 1 223468999999999999998876
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.19 E-value=0.002 Score=81.88 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=85.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc---cc-cceeEEEEeCCCCCHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL---DH-FNLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~ 262 (1521)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++...... .. .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 368999999999999996642 2344689999999999999998732111 11 13444421 11111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCc--------CccchhhhcccccCCCCCcEEEEEccc
Q 000427 263 KTILTSIVADQNVDNLNLNSLQEKLNKQL-SGKKFLLVLDDVWNR--------NYDDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~ 333 (1521)
+. +.. -..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-++|-+|..
T Consensus 254 ---la---G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 254 ---LA---GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred ---hc---ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 11 110 0112222222222222 345789999999531 011222223333222 23455655554
Q ss_pred HHHHHhh-------CCCCceeCCCCChhhHHHHHHHhh
Q 000427 334 QEVAKIM-------GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 334 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
.+..... .-...+.+++.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4432211 223579999999999999988654
No 173
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.19 E-value=2.3e-05 Score=81.27 Aligned_cols=86 Identities=22% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccccCceeEEEEcCcccc-----ccCccccCCcccceeeccCCc---cc-cccc-------chhccccccEEecCCccch
Q 000427 596 LFKLQRLRVFSLRGYHIY-----ELPDSIGDLRYLRYLNLSGTR---II-TLPE-------SVNTLYNLHTLLLEGCLRL 659 (1521)
Q Consensus 596 ~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~Ls~~~---i~-~lP~-------~i~~L~~L~~L~L~~~~~l 659 (1521)
+..+..+..+|||+|.|. .+...|.+-.+|+.-+++.-. .. .+|+ .+-++++|++.+|+.|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 335778899999999986 355667778899999988632 11 3343 4567899999999988554
Q ss_pred hhcccc----ccccCCCceecccCCC
Q 000427 660 KKLCAD----MGNLIKLHYLNNSYTG 681 (1521)
Q Consensus 660 ~~lp~~----i~~L~~L~~L~l~~~~ 681 (1521)
...|.. |++-+.|.||.+++|+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 444443 6777899999999887
No 174
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.17 E-value=0.01 Score=62.60 Aligned_cols=182 Identities=16% Similarity=0.232 Sum_probs=105.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe-CCCCCHHHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCV-SDDFDVIRLTKTILTSIVADQNVDN-LNLNSLQEKLNKQ 290 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~~~ 290 (1521)
+.+++.++|.-|.|||.++++.... ..+ +.++-|.+ ....+...+...++..+..+..... .-.++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 3479999999999999999954431 111 11221222 3445677788888887776322111 1223333344433
Q ss_pred h-CCce-EEEEEeCCCCcCccchhhhcccccCCCCC---cEEEEEcccH-------HHHHhhC-CCCc-eeCCCCChhhH
Q 000427 291 L-SGKK-FLLVLDDVWNRNYDDWDQLRRPFEVGAPG---SKIIVTTRNQ-------EVAKIMG-TVPA-YQLKKLSDNDC 356 (1521)
Q Consensus 291 l-~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~iivTtR~~-------~v~~~~~-~~~~-~~l~~L~~~~~ 356 (1521)
. +++| ..+++||..+...+..+.++........+ -+|+..-.-+ .+.+..+ .... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4677 89999999776666666655433221111 1233332211 1111111 1123 89999999999
Q ss_pred HHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHh
Q 000427 357 LAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGG 399 (1521)
Q Consensus 357 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 399 (1521)
..++..+.-+...+. +---.+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHH
Confidence 988888765443221 111235667799999999999987753
No 175
>PRK08116 hypothetical protein; Validated
Probab=97.17 E-value=0.0015 Score=72.94 Aligned_cols=103 Identities=22% Similarity=0.258 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.++|..|+|||.||.++++.. ..+-..+++++ ..+++..+........ .....+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 458899999999999999999853 22233455665 3344455544433211 112222 22333433
Q ss_pred eEEEEEeCCCCcCccchhh--hcccccC-CCCCcEEEEEccc
Q 000427 295 KFLLVLDDVWNRNYDDWDQ--LRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 333 (1521)
. ||||||+..+...+|.. +...+.. ...|..+||||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 89999996554455644 3332221 1245668999875
No 176
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0074 Score=69.25 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=89.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
.+...+.+.|++|+|||+||..++.+ ..|..+--++..+.... . +......+...+....
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~-------------s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGL-------------S---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCc-------------c---HHHHHHHHHHHHHHhh
Confidence 45677889999999999999999874 46765433322111110 0 1122223334445555
Q ss_pred CCceEEEEEeCCCCcCccchhhhcc------------cc---cCCCCCcEEEEEcccHHHHHhhCC----CCceeCCCCC
Q 000427 292 SGKKFLLVLDDVWNRNYDDWDQLRR------------PF---EVGAPGSKIIVTTRNQEVAKIMGT----VPAYQLKKLS 352 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~~~l~~------------~l---~~~~~gs~iivTtR~~~v~~~~~~----~~~~~l~~L~ 352 (1521)
+..--.||+||+.. .-+|-.+.. .+ |+.++.--|+-||....+...|+- ...|+++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 66778999999933 345544332 22 222233345567777888888763 3578999998
Q ss_pred h-hhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhc
Q 000427 353 D-NDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKC 387 (1521)
Q Consensus 353 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (1521)
. ++..+.++..- .-.+.+.+.++++.+.+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 67777776542 123344566677777666
No 177
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.14 E-value=0.0034 Score=73.91 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=86.9
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
.++.|.+..++++.+.+.-+-. .+-..++-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------H
Confidence 4678999888888776632100 012345778999999999999999999842 2222 12211 1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC------c----cc----hhhhcccccC--CCC
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN------Y----DD----WDQLRRPFEV--GAP 323 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~----~~----~~~l~~~l~~--~~~ 323 (1521)
.+ .....+ .....+.+.+.......+.+|++|++..-. . .. +.++...+.. ...
T Consensus 214 ~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 EF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 111111 111222333333345678999999974210 0 00 1112222221 224
Q ss_pred CcEEEEEcccHHHHHh--h---CCCCceeCCCCChhhHHHHHHHhh
Q 000427 324 GSKIIVTTRNQEVAKI--M---GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
+..||+||...+.... . .-...+++...+.++..++|..+.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 5678888876543321 1 123468888888888888887665
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.015 Score=66.11 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=63.1
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDF 370 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 370 (1521)
+++-++|+|++...+...-..+...+..-..++.+|++|.. ..+...+ .-...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45668999999665545555666666655567777766664 3343322 223568899999999988886431
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 371 SSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
.+ +..+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1236678999999998775544
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0017 Score=65.64 Aligned_cols=87 Identities=21% Similarity=0.070 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.|+|++|+||||+|+.++.... .....++++..+........... ........ ...........+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999998432 22223555555443332222111 11111111 1122222223333333333
Q ss_pred -eEEEEEeCCCCc
Q 000427 295 -KFLLVLDDVWNR 306 (1521)
Q Consensus 295 -~~LlVlDdv~~~ 306 (1521)
..+|++|+++..
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 489999999665
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.04 E-value=0.0048 Score=80.59 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996542 245669999999999999999874
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.01 E-value=0.0035 Score=67.40 Aligned_cols=134 Identities=14% Similarity=0.160 Sum_probs=74.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE----eCCC-----CCH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTC----VSDD-----FDV 258 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~-----~~~ 258 (1521)
.+.+|......+..++... .+|.++|.+|+|||+||.++..+.-..+.|+.++-+. +++. -+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4667888888888888542 4899999999999999999877432234455443321 1111 111
Q ss_pred HHH----HHHHHHHhhcCCCCCcccHHHHHH--------HHHHHhCCceE---EEEEeCCCCcCccchhhhcccccCCCC
Q 000427 259 IRL----TKTILTSIVADQNVDNLNLNSLQE--------KLNKQLSGKKF---LLVLDDVWNRNYDDWDQLRRPFEVGAP 323 (1521)
Q Consensus 259 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1521)
.+- ++-+.+.+..-. .....+.+.. .=..+++++.+ +||+|++.+.+. .++...+...+.
T Consensus 128 ~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 111 222222221110 0011111100 00134566654 999999977544 444444555568
Q ss_pred CcEEEEEcccH
Q 000427 324 GSKIIVTTRNQ 334 (1521)
Q Consensus 324 gs~iivTtR~~ 334 (1521)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999986543
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.017 Score=65.54 Aligned_cols=177 Identities=12% Similarity=0.113 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc-------ccceeEEEEeCCCCCHHHHHHHHHH
Q 000427 195 EKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD-------HFNLKAWTCVSDDFDVIRLTKTILT 267 (1521)
Q Consensus 195 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~~~~~~~~~~~~~i~~ 267 (1521)
..+.+.+.+..+. -...+.++|+.|+||+++|+.++.-.--.. .....-++..+..+|...+
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 3455666554332 346788999999999999998865211000 0000001111111111000
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhh-
Q 000427 268 SIVADQNVDNLNLNSLQEKLNKQL-----SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIM- 340 (1521)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~- 340 (1521)
........-..+++.+ +.+.+ .+++=++|+|++..........+...+..-..++.+|++|.+ ..+....
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000001122333322 22222 244558899999766666777787777766667777766665 3444333
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 341 GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
.....+.+.+++.+++.+.+.... . + .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG---I---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC---C---c------hHHHHHHHcCCCHHHHHHH
Confidence 233578999999999988886431 0 1 1346789999999977655
No 183
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.0004 Score=87.25 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=43.1
Q ss_pred cccceeeccCCccc--ccccch-hccccccEEecCCccch-hhccccccccCCCceecccCCCCcccccCCCCCCCcccc
Q 000427 623 RYLRYLNLSGTRII--TLPESV-NTLYNLHTLLLEGCLRL-KKLCADMGNLIKLHYLNNSYTGSLEEMPLGFGKLTCLQT 698 (1521)
Q Consensus 623 ~~Lr~L~Ls~~~i~--~lP~~i-~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 698 (1521)
.+|++||++|...- .=|..+ ..|+.|++|.+.+-... .+.-.-..++++|+.||+++++ +..+ .||++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 45666666664322 122333 34666777766652111 1112224566777777777776 5555 67777777777
Q ss_pred cCce
Q 000427 699 LCNF 702 (1521)
Q Consensus 699 L~~~ 702 (1521)
|...
T Consensus 200 L~mr 203 (699)
T KOG3665|consen 200 LSMR 203 (699)
T ss_pred Hhcc
Confidence 7433
No 184
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.98 E-value=0.0081 Score=71.23 Aligned_cols=119 Identities=21% Similarity=0.229 Sum_probs=75.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCce
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKK 295 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 295 (1521)
++.|+|+-++||||+++.+... ..+. .+++..-+......- ..+....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~------------------l~d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIE------------------LLDLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhh------------------HHHHHHHHHHhhccCC
Confidence 9999999999999999777663 2222 455544332111111 1111111222212277
Q ss_pred EEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHH-----hh-CCCCceeCCCCChhhHHHHH
Q 000427 296 FLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAK-----IM-GTVPAYQLKKLSDNDCLAVF 360 (1521)
Q Consensus 296 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf 360 (1521)
..|+||.|... .+|+.....+.+.++. +|++|+-+..... .. |....+++.||+..|...+-
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 89999999665 7899888777776555 8888888754432 21 33457899999999876643
No 185
>CHL00176 ftsH cell division protein; Validated
Probab=96.94 E-value=0.008 Score=75.10 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=95.5
Q ss_pred CccccchhHHHHHHH---HHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 000427 187 AKVYGREIEKKDVVE---LLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 260 (1521)
.+++|.++.++++.+ ++..... -+....+-|.++|++|+|||++|+.++... ... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 357788766655544 4432211 012234568999999999999999998742 112 2333211 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC----------ccchhh----hcccccC--CCCC
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN----------YDDWDQ----LRRPFEV--GAPG 324 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~g 324 (1521)
+. .... ......+...+.+.....+++|++||+..-. .+.+++ +...+.. ...+
T Consensus 252 f~----~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 1000 0112233444555556788999999994320 011222 2222211 2345
Q ss_pred cEEEEEcccHHHHHh-h----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCC
Q 000427 325 SKIIVTTRNQEVAKI-M----GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDG 389 (1521)
Q Consensus 325 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 389 (1521)
..||.||...+.... + .-...+.+...+.++-.++++.++-. .... .......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLS----PDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-cccc----hhHHHHHHHhcCCC
Confidence 667777776544321 1 12356888888888888899887632 1111 12234667778777
No 186
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.00099 Score=66.87 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=81.9
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhh-hhhhcCCCCcceEe
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESI-AERLDNNTSLEDIY 1285 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~ 1285 (1521)
.+...+||++|.+... ..|..++.|.+|.|++|.++.+-|.--.-+++|..|.|.+|++.... -..+..|+.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4678899999988542 35778999999999999999877765556788999999999886542 23477899999999
Q ss_pred eccccccccc---cccCCCCCCcceeecccC
Q 000427 1286 ISECENLKIL---PSGLHNLHQLREISVERC 1313 (1521)
Q Consensus 1286 L~~n~~~~~~---~~~l~~l~~L~~L~l~~n 1313 (1521)
+-+|+....- ...+..+|+|+.||+.+=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999986532 123567788888887764
No 187
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.01 Score=70.92 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=67.3
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
+.+-+|.++-+++|.+++.-....++.+-++++.+|++|||||++|+.++. .....|.. ++|+.-.|..++
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEI---- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhh----
Confidence 456789999999999999655443455668999999999999999999997 34344422 456665555433
Q ss_pred HHHhhcCCC--CCcccHHHHHHHHHHHhCCceEEEEEeCCC
Q 000427 266 LTSIVADQN--VDNLNLNSLQEKLNKQLSGKKFLLVLDDVW 304 (1521)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 304 (1521)
.+... ..++ ...+.+.+++. +...=|+.+|.|.
T Consensus 481 ----kGHRRTYVGAM-PGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 481 ----KGHRRTYVGAM-PGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred ----cccceeeeccC-ChHHHHHHHhh-CCCCceEEeehhh
Confidence 11111 0111 22334444333 4456688899984
No 188
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.88 E-value=0.015 Score=69.70 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=118.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcc------cccccceeEEEEeCCCCCHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQ------VLDHFNLKAWTCVSDDFDVIRL 261 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~~~~ 261 (1521)
.+-+|+.|..+|-+++...-. .++.-+.+.|.|.+|.|||..+..|.+..+ -...|+. +.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 456899999999988865432 223446999999999999999999987321 1223433 44555556679999
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcCccchhhhcccccC-CCCCcEEEEEccc--HH--
Q 000427 262 TKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGSKIIVTTRN--QE-- 335 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~--~~-- 335 (1521)
+..|..++.+.........+.+..++.. .-+.+..++++|++..--...-+-+...|.| ..++||++|-+=. .+
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 9999999987654333333433333320 0123578899998732111112223334443 4567877665432 11
Q ss_pred -------HHHhhCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 336 -------VAKIMGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 336 -------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
++..++ ...+...|-++++-.+....+..+. +.......+-+|++|+.--|-.=.|+.+.
T Consensus 555 Er~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 555 ERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred HHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 111111 1346677777777777776665332 22233344445555555555444444443
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.036 Score=63.10 Aligned_cols=176 Identities=11% Similarity=0.105 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc--------ceeEEEEeCCCCCHHHHHHHHHH
Q 000427 196 KKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--------NLKAWTCVSDDFDVIRLTKTILT 267 (1521)
Q Consensus 196 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~~ 267 (1521)
-+.+...+..+. -.....++|+.|+||+++|+.++.-.--.... ..+-++..+..+|...+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 455666664332 24677899999999999999987521110100 00011111111221110
Q ss_pred HhhcCCCCCcccHHHHHH---HHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HHHHhhC-
Q 000427 268 SIVADQNVDNLNLNSLQE---KLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EVAKIMG- 341 (1521)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~---~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~- 341 (1521)
. ......-..++..+ .+... ..+++=++|+|++..........+...+.....++.+|++|.+. .+.....
T Consensus 80 --~-p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --E-PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --c-cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 0 00001122333332 22211 23556688899997766667777777777666677777777653 3433322
Q ss_pred CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000427 342 TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAA 394 (1521)
Q Consensus 342 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 394 (1521)
....+.+.+++.+++.+.+.... +. . ...+...+..++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-~~-----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-SA-----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-cc-----C---hHHHHHHHHHcCCCHHHH
Confidence 23579999999999998887653 11 1 112556788999999644
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.015 Score=67.44 Aligned_cols=163 Identities=10% Similarity=0.115 Sum_probs=87.2
Q ss_pred cccc-chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 188 KVYG-REIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 188 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.++| -+..++.+...+..+. -.....++|+.|+||||+|+.+++..--....... .+... ..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 5666777777775432 34677899999999999999886532111100000 00000 0000000
Q ss_pred HHhh-----cCCCCCcccHHHHHHHHHHH----hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HH
Q 000427 267 TSIV-----ADQNVDNLNLNSLQEKLNKQ----LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EV 336 (1521)
Q Consensus 267 ~~~~-----~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 336 (1521)
..-. ..........+++.+.+... ..+++=++|+|++..-.......+...+.....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 00000111223332222111 23455578999996655555666777776656677777777653 33
Q ss_pred HHhh-CCCCceeCCCCChhhHHHHHHH
Q 000427 337 AKIM-GTVPAYQLKKLSDNDCLAVFVQ 362 (1521)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~~~~~lf~~ 362 (1521)
.... .....+++.+++.++..+.+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3322 2235799999999998877764
No 191
>PRK08118 topology modulation protein; Reviewed
Probab=96.84 E-value=0.00055 Score=70.41 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEE
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVL-DHFNLKAW 249 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 249 (1521)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999854332 45676665
No 192
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.015 Score=64.14 Aligned_cols=188 Identities=15% Similarity=0.149 Sum_probs=103.1
Q ss_pred ccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 260 (1521)
++=|-++.+++|.+...-+-. -+=..++=|.++|++|.|||-||++|++ +....| +.|..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc------
Confidence 455788888888877632211 0223567788999999999999999999 444444 22221
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-CceEEEEEeCCCCc--------C------ccchhhhcccccCC--CC
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLS-GKKFLLVLDDVWNR--------N------YDDWDQLRRPFEVG--AP 323 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~--------~------~~~~~~l~~~l~~~--~~ 323 (1521)
.++++...+.. ..+.+.+.+.-+ ..+..|.+|.+..- . +-..-++...+..+ ..
T Consensus 219 --SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 --SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred --HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 12233222211 123333333333 45889999988431 0 01122233333322 23
Q ss_pred CcEEEEEcccHHHHHh--hC---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh----HHH
Q 000427 324 GSKIIVTTRNQEVAKI--MG---TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP----LAA 394 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai 394 (1521)
.-|||.+|...++..- .. -++.++++.-+.+.-.++|.-|+-. -+..+.-+++. +++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~e~----la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDLEL----LARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCHHH----HHHhcCCCchHHHHHH
Confidence 5689999887666432 12 2356787744445556777777632 22233344444 555565544 345
Q ss_pred HHHHhhhC
Q 000427 395 QTLGGLLR 402 (1521)
Q Consensus 395 ~~~~~~l~ 402 (1521)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55566654
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.81 E-value=0.01 Score=60.68 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=74.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc------------------ccceeEEEEe
Q 000427 191 GREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD------------------HFNLKAWTCV 252 (1521)
Q Consensus 191 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~ 252 (1521)
|-+...+.+.+.+.... -...+.++|+.|+||+|+|..+++..--.. ...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45566777777775442 245788999999999999998876321111 1112233322
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-----CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEE
Q 000427 253 SDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL-----SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKI 327 (1521)
Q Consensus 253 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 327 (1521)
.... .....++.. .+.+.+ .+++=++|+||+.....+.+..+...+.....++++
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2110 012233333 222222 245668999999777777788888888777788999
Q ss_pred EEEcccHH-HHHhh-CCCCceeCCCC
Q 000427 328 IVTTRNQE-VAKIM-GTVPAYQLKKL 351 (1521)
Q Consensus 328 ivTtR~~~-v~~~~-~~~~~~~l~~L 351 (1521)
|++|++.. +.... .-...+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 88888754 33222 22234555554
No 194
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.81 E-value=0.0082 Score=74.18 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=92.6
Q ss_pred CccccchhHHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 000427 187 AKVYGREIEKKDVVELLL---RDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 260 (1521)
.+++|-+..++++.+++. ..+. .+....+-+.++|++|+|||++|+.++... ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 467888777665554432 2110 012234558899999999999999999742 112 222221 11
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC----------ccchhh----hccccc--CCCCC
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN----------YDDWDQ----LRRPFE--VGAPG 324 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~g 324 (1521)
+. .... ......+...+.......+.+|++||+..-. .+.+.. +...+. ....+
T Consensus 124 ~~----~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 FV----EMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 1111 0112233344444445667899999994310 011111 111111 12234
Q ss_pred cEEEEEcccHHHHH-h----hCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000427 325 SKIIVTTRNQEVAK-I----MGTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 325 s~iivTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
-.||.||...+... . ..-...+.++..+.++-.++|..+.-... ..... ....+++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~-~~~~~----~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK-LAPDV----DLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC-CCcch----hHHHHHHhCCCCC
Confidence 55666776543211 1 12235688888888888888887763221 11111 2346777777733
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.79 E-value=0.014 Score=59.85 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.++||-++.++++.-...+ ++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4789999999988766643 3467788999999999998888776
No 196
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.013 Score=70.54 Aligned_cols=164 Identities=18% Similarity=0.276 Sum_probs=91.4
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
+.+-+|-++.+++|+++|.-......-+-+++++||++|||||+|++.++. .....|-. +.++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 566789999999999999643322233447999999999999999999998 45555532 444444444332
Q ss_pred HHHhhcCCC--CCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCcc---c-hhhhcccccCC-------------CCCcE
Q 000427 266 LTSIVADQN--VDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYD---D-WDQLRRPFEVG-------------APGSK 326 (1521)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~-~~~l~~~l~~~-------------~~gs~ 326 (1521)
.+... ..++. ..+.+.+++. +.+.=+++||.++....+ + -..+...+.+. --=|.
T Consensus 393 ----RGHRRTYIGamP-GrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 393 ----RGHRRTYIGAMP-GKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ----ccccccccccCC-hHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 21111 01222 2233333333 456778999998442110 0 11122111110 01244
Q ss_pred EE-EEccc-HH-HH-HhhCCCCceeCCCCChhhHHHHHHHhh
Q 000427 327 II-VTTRN-QE-VA-KIMGTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 327 ii-vTtR~-~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
|+ |||-+ -+ +. -......++++.+-+++|=.+.-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 43 44433 22 21 122345678888888888777766654
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.74 E-value=0.0028 Score=67.89 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCV 252 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 252 (1521)
-.++|+|..|.||||++..+..+ ....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 46789999999999999999873 5668877777654
No 198
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=8e-05 Score=77.70 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=49.5
Q ss_pred CccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhh-hhhhcCCCCcceEee
Q 000427 1208 SLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESI-AERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1208 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~L 1286 (1521)
+.+.|+..+|.+.+. .....|+.|+.|.||-|++.+.-| +..+++|++|+|..|.|.+.- ...+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 566677777776542 234456777777777777665533 556666777777666655432 123455666666666
Q ss_pred cccccccc
Q 000427 1287 SECENLKI 1294 (1521)
Q Consensus 1287 ~~n~~~~~ 1294 (1521)
..|+-.+.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 66655543
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.66 E-value=0.0007 Score=85.08 Aligned_cols=135 Identities=17% Similarity=0.126 Sum_probs=81.6
Q ss_pred CCccEEEeccCCCch-hhhhhc-CCCCCccEEEeecCCCCc-ccCCCCCCccccceeeecccCCchhhhhhhcCCCCcce
Q 000427 1207 PSLKSLDVYRCSKLE-SIAERL-DNNTSLETIRISNCESPK-ILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLED 1283 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~-~~~~~l-~~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 1283 (1521)
.+|+.|++++..... ..|..+ ..+|+|+.|.+++=.+.. .+.....++|+|..||+|++++... ..++.+.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 478888888865442 223333 347888888888755432 2233455677888888888777655 45677777777
Q ss_pred Eeecccccccc-ccccCCCCCCcceeecccCCCcccC------CCCCCCccccceeecccccccccc
Q 000427 1284 IYISECENLKI-LPSGLHNLHQLREISVERCGNLVSF------PEGGLPCAKVTKLCIRWCKRLEAL 1343 (1521)
Q Consensus 1284 L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~------p~~~~~~~~L~~L~l~~n~~~~~~ 1343 (1521)
|.+.+-.+... .-..+.+|++|+.||+|........ -+....+|+|+.||.|+..+.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 77776555431 1124566777777777776443211 012223566677776666555443
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.64 E-value=0.03 Score=62.70 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 000427 195 EKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 195 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 262 (1521)
-++++..++..+ +.|.++|.+|+|||++|+.++. .... ..+++++....+..+++
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 445555665432 3567999999999999999986 2222 23456666555544443
No 201
>PRK12377 putative replication protein; Provisional
Probab=96.64 E-value=0.0048 Score=67.36 Aligned_cols=101 Identities=22% Similarity=0.151 Sum_probs=55.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.++|..|+|||+||.++++.. ......++++++. +++..+-..... ....... + +.+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGEKF---L-QEL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHHHH---H-HHh-cC
Confidence 578999999999999999999843 2333345666543 344444333211 1111221 2 222 34
Q ss_pred eEEEEEeCCCCcCccchhh--hcccccC-CCCCcEEEEEccc
Q 000427 295 KFLLVLDDVWNRNYDDWDQ--LRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 333 (1521)
-=||||||+.......|.+ +...+.. ....--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5599999996554445543 3322222 1122347788764
No 202
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.63 E-value=0.0017 Score=67.84 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCccEEEeccCCCchhh----hhhcCCCCCccEEEeecCCCCcc----cC-------CCCCCccccceeeecccCCchhh
Q 000427 1207 PSLKSLDVYRCSKLESI----AERLDNNTSLETIRISNCESPKI----LP-------SGLHNLRQLRKISIQMCGNLESI 1271 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~Ls~n~~~~~----~p-------~~l~~l~~L~~L~Ls~n~~~~~~ 1271 (1521)
..+++++||+|.+.... ...+.+-.+|+..++++-. ++. ++ ..+..+|.|+..+||.|.+....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 57888888888876433 3445566778877777642 222 11 23455677777777777765544
Q ss_pred hh----hhcCCCCcceEeeccccc
Q 000427 1272 AE----RLDNNTSLEDIYISECEN 1291 (1521)
Q Consensus 1272 ~~----~~~~l~~L~~L~L~~n~~ 1291 (1521)
|+ .+.+-+.|++|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 33 345567777777777765
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.62 E-value=0.038 Score=71.66 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=68.8
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLS---NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
..++|-+..++.+...+.....+ .+....++.++|+.|+|||+||+.++.. . +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 56788888888888887643210 1123457889999999999999999873 2 23345555544222111
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhccccc
Q 000427 264 TILTSIVADQN-VDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFE 319 (1521)
Q Consensus 264 ~i~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 319 (1521)
+..-++.... ........+.+.+++ ...-+++||++.....+.++.+...+.
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1111221111 011112223333321 234599999998776666777766554
No 204
>PRK08181 transposase; Validated
Probab=96.62 E-value=0.0034 Score=69.50 Aligned_cols=101 Identities=23% Similarity=0.195 Sum_probs=54.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.-+.++|++|+|||.||..+.+.. ......++|+.+ .+++.++..... ....+.....+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~l~~l-----~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR------ELQLESAIAKL-----DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHHHHHH-----hc
Confidence 458999999999999999998732 222234455543 344444433211 11222222222 12
Q ss_pred eEEEEEeCCCCcCccchh--hhcccccCCCCCcEEEEEcccH
Q 000427 295 KFLLVLDDVWNRNYDDWD--QLRRPFEVGAPGSKIIVTTRNQ 334 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 334 (1521)
.=|||+||+......+|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 349999999654433432 2333332211123588888753
No 205
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.027 Score=58.44 Aligned_cols=121 Identities=24% Similarity=0.283 Sum_probs=71.8
Q ss_pred ccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 185 KEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 185 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
+-..++|.|..++.+++--..-- .+....-|.+||.-|+|||+|++++.+. +.+..-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 34578999998888876543221 1122356789999999999999999883 3333322 2333211
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC-cCccchhhhcccccCC---CCCcEEEEEccc
Q 000427 265 ILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWN-RNYDDWDQLRRPFEVG---APGSKIIVTTRN 333 (1521)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtR~ 333 (1521)
+..++..+.+.++. ..+||.|..||+-- +..+.+..++..+..+ .+...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11222333333332 36799999999833 3345677777766542 344555555554
No 206
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.0058 Score=72.83 Aligned_cols=189 Identities=18% Similarity=0.178 Sum_probs=107.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILT 267 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 267 (1521)
++||-+.-...|...+....- ..--...|+-|+||||+|+-++.-.-.. -| ....++..-..-++|-.
T Consensus 17 evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhhc
Confidence 569999999999998865431 3445678999999999999987621111 11 11111111111122222
Q ss_pred H-------hhcCCCCCcccHHHHHHHHHHH-hCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHH
Q 000427 268 S-------IVADQNVDNLNLNSLQEKLNKQ-LSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAK 338 (1521)
Q Consensus 268 ~-------~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 338 (1521)
. +........++.+++.+.+.-. .+++.=+.|+|.|.--+...|..+..-+-......+.|++|++ +.+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1 0000010112222222222111 1344448899999877778888888877766667666666665 44433
Q ss_pred hh-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChH
Q 000427 339 IM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPL 392 (1521)
Q Consensus 339 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 392 (1521)
.. .....|.++.++.++-...+...+-...-.. .++....|+++.+|...
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCChh
Confidence 22 3346799999999988888877663322211 13445567777776543
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.56 E-value=0.0023 Score=72.53 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=42.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDK 238 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 238 (1521)
+++|-++.++++++++.....+.+...++++++|++|+||||||+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976543224456899999999999999999998743
No 208
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.54 E-value=0.0066 Score=68.92 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=70.2
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhh
Q 000427 191 GREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIV 270 (1521)
Q Consensus 191 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 270 (1521)
+|....+...+++..... +...+-+.++|..|+|||.||.++++... +..+ .+.++++ ..++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHHHh
Confidence 455555566666654321 12346789999999999999999998532 2223 3455654 244455544432
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhh--hcccc-cCC-CCCcEEEEEccc
Q 000427 271 ADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQ--LRRPF-EVG-APGSKIIVTTRN 333 (1521)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR~ 333 (1521)
. .+..+ .+.. + .+-=||||||+..+...+|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~------~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D------GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c------CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11222 2222 2 234589999997776677864 44333 221 234568888864
No 209
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.52 E-value=0.0091 Score=66.17 Aligned_cols=49 Identities=24% Similarity=0.154 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDH----FNLKAWTCVSDDFDVIRL 261 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 261 (1521)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++..++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 4589999999999999999999753222221 357899998887776544
No 210
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.49 E-value=0.062 Score=61.94 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=122.7
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHH-HHHhcCcccccccceeEEEEeCCC---CCHHHHHHHHHH
Q 000427 192 REIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLA-QLVYNDKQVLDHFNLKAWTCVSDD---FDVIRLTKTILT 267 (1521)
Q Consensus 192 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 267 (1521)
|.+..++|..||.+... ..|.|.|+-|.||+.|+ .++..+.+. +..+++.+- .+-..+.+.++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 56788999999977643 79999999999999999 777764322 444544332 223344444444
Q ss_pred Hhh-----------------------cCCCCCcccHH-HHHH-------HHHH-------------------HhC---Cc
Q 000427 268 SIV-----------------------ADQNVDNLNLN-SLQE-------KLNK-------------------QLS---GK 294 (1521)
Q Consensus 268 ~~~-----------------------~~~~~~~~~~~-~~~~-------~l~~-------------------~l~---~~ 294 (1521)
++| +....-..+.+ ++.. .|++ ++. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 443 21111112222 1111 1111 010 12
Q ss_pred eEEEEEeCCCCcC---ccchhhhccccc--CCCCCcEEEEEcccHHHHH----hhC--CCCceeCCCCChhhHHHHHHHh
Q 000427 295 KFLLVLDDVWNRN---YDDWDQLRRPFE--VGAPGSKIIVTTRNQEVAK----IMG--TVPAYQLKKLSDNDCLAVFVQH 363 (1521)
Q Consensus 295 ~~LlVlDdv~~~~---~~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~~ 363 (1521)
|=+||+|+.-... ..-|+.+..+-. -..+-.+||++|-+....+ .+. ..+.+.|...+++.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 5689999984421 111333322111 1234567888887754443 332 3467899999999999999988
Q ss_pred hhCCCCC------------CCC----hhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCCh-hHHHHHHh
Q 000427 364 SLGTRDF------------SSH----KSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDR-SEWEDVLS 415 (1521)
Q Consensus 364 ~~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~-~~w~~~l~ 415 (1521)
.-..... ... ....+-....++.+||--.-+..+++.++...++ +.-+.+.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7332110 000 1233445668889999999999999999886553 33444443
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.45 E-value=0.0087 Score=66.65 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccc-cceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDH-FNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
...+.++|..|+|||.||.++++.. ... -..++++++ .+++..+...+ +.....+.. +.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~------~~l~~~l~~~~-----------~~~~~~~~~-~~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF------VEGFGDLKDDF-----------DLLEAKLNR-MK 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH------HHHHHHHHHHH-----------HHHHHHHHH-hc
Confidence 4678999999999999999999843 222 234566664 22233322211 111122222 22
Q ss_pred CceEEEEEeCCCC-----cCccchhh--hcccccC-CCCCcEEEEEccc
Q 000427 293 GKKFLLVLDDVWN-----RNYDDWDQ--LRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 293 ~~~~LlVlDdv~~-----~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 333 (1521)
+-=||||||+.. +...+|.. +...+.. ...+..+||||..
T Consensus 177 -~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 -KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred -CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22345543 3333322 1124457888864
No 212
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.44 E-value=0.00073 Score=84.71 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=8.3
Q ss_pred hcCCCCcceEeecccc
Q 000427 1275 LDNNTSLEDIYISECE 1290 (1521)
Q Consensus 1275 ~~~l~~L~~L~L~~n~ 1290 (1521)
...++.|+.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3445555555555554
No 213
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.081 Score=61.06 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccc--------cccceeEEEEeCCCCCHHHHHHHHH
Q 000427 195 EKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVL--------DHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 195 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.-+++...+..+. -...+.+.|+.|+||+++|.+++.-.--. +....+-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3455666664432 35678899999999999999876521110 00000111111112221111
Q ss_pred HHhhcCCCCCcccHHHHHH---HHHH-HhCCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhh-
Q 000427 267 TSIVADQNVDNLNLNSLQE---KLNK-QLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIM- 340 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~---~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~- 340 (1521)
........-..++..+ .+.. -..+++=++|+|++..........+...+..-..++.+|++|.+ ..+...+
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000001122333332 2221 12356668999999666556667777777665667777766665 4444332
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 341 GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 341 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
.-...+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|..+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223568999999999888776432 1 11 233667899999999755433
No 214
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.41 E-value=0.0033 Score=65.29 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.-+.++|..|+|||.||.++.+.. ....+ .+.|+.+ .+++.. +..... ....+.....+ . +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~----l~~~~~--~~~~~~~~~~l----~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDE----LKQSRS--DGSYEELLKRL----K-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHH----HHCCHC--CTTHCHHHHHH----H-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceecc----cccccc--ccchhhhcCcc----c-c
Confidence 568999999999999999998743 22222 3456653 333333 332211 11222222222 2 2
Q ss_pred eEEEEEeCCCCcCccchhh--hcccccC-CCCCcEEEEEccc
Q 000427 295 KFLLVLDDVWNRNYDDWDQ--LRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 333 (1521)
-=||||||+......+|.. +...+.. ..++ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 2478899997665455543 2211211 1223 57888875
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.40 E-value=0.017 Score=75.60 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=74.2
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLS---NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
..++|.+..++.+...+.....+ .+....++.++|+.|+|||++|+.+++.. ...-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 46889999999988888643210 12223578899999999999999998632 11112233444432211 1
Q ss_pred HHHHHhhcCCCC-Cc-ccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCC----C-------CCcEEEEE
Q 000427 264 TILTSIVADQNV-DN-LNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVG----A-------PGSKIIVT 330 (1521)
Q Consensus 264 ~i~~~~~~~~~~-~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivT 330 (1521)
.....+.+..+. .. .....+...++. ...-+|+|||+.....+.+..+...+..+ + ..+-||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~---~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHh---CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 112222222110 01 111122222221 22359999999766666677666655332 1 22337778
Q ss_pred ccc
Q 000427 331 TRN 333 (1521)
Q Consensus 331 tR~ 333 (1521)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 875
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.39 E-value=0.015 Score=63.37 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
...+.++|.+|+|||+||.++++... ..-..+++++ ..++...+-.... . .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~-~---~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFS-N---SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHh-h---ccccHHH----HHHHhc-
Confidence 35788999999999999999998432 2223455554 3444444433332 1 1112222 222333
Q ss_pred ceEEEEEeCCCCcCccchhh--hcccccC-CCCCcEEEEEccc
Q 000427 294 KKFLLVLDDVWNRNYDDWDQ--LRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 333 (1521)
+.=+||+||+......+|+. +...+.. ....-.+||||..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 33488899997665566664 2222221 1123347777764
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.022 Score=64.93 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD--VIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (1521)
+.++|+++|++|+||||++..++.... ... ..+..+++. .+. ..+-++..++.++.+.. ...+...+.+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 458999999999999999999986322 111 234445443 332 22222333333332221 233555666555444
Q ss_pred hCC-ceEEEEEeCCCC
Q 000427 291 LSG-KKFLLVLDDVWN 305 (1521)
Q Consensus 291 l~~-~~~LlVlDdv~~ 305 (1521)
-.. +.=+|++|-...
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 221 234778887744
No 218
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.39 E-value=0.092 Score=61.56 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCc
Q 000427 192 REIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDK 238 (1521)
Q Consensus 192 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 238 (1521)
|+.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+..
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455677778776542 2467999999999999999999988743
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0065 Score=75.44 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=73.9
Q ss_pred cCccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc---ceeEEEEeCCCCCHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLS---NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF---NLKAWTCVSDDFDVI 259 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~ 259 (1521)
...++|-+..++.+.+.+.....+ ......+...+|+.|||||.||++++.. -| +..+-++.|+-..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E-- 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME-- 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH--
Confidence 357899999999999988654331 2334567888999999999999998862 23 2333333332211
Q ss_pred HHHHHHHHHhhcCCCC--CcccHHHHHHHHHHHhCCceE-EEEEeCCCCcCccchhhhcccccC
Q 000427 260 RLTKTILTSIVADQNV--DNLNLNSLQEKLNKQLSGKKF-LLVLDDVWNRNYDDWDQLRRPFEV 320 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~ 320 (1521)
+.-+..+.+..+. ...... .+-+..+.++| +|.||+|...+++-.+-+.+.+.+
T Consensus 563 ---kHsVSrLIGaPPGYVGyeeGG----~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 ---KHSVSRLIGAPPGYVGYEEGG----QLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ---HHHHHHHhCCCCCCceecccc----chhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1112333333221 112222 34445566777 888999977777777777766654
No 220
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.38 E-value=0.0093 Score=65.47 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=35.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRL 261 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 261 (1521)
.-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++..++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 45799999999999999999998743 2334678899887 5555443
No 221
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.34 E-value=0.0073 Score=78.65 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=76.1
Q ss_pred cCccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 262 (1521)
...++|.+..++.+.+.+..... ..+....++.++|+.|+|||.+|+.++.. ..+.....+-++++.-.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~--- 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH--- 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh---
Confidence 35789999999999998864321 02234568899999999999999988763 21111222222322211110
Q ss_pred HHHHHHhhcCCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCC-----------CCcEEEE
Q 000427 263 KTILTSIVADQNV--DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGA-----------PGSKIIV 329 (1521)
Q Consensus 263 ~~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiv 329 (1521)
. ...+.+.... .......+...+++ ...-+|+||++...+.+.++.+...+..+. ..+-||+
T Consensus 640 -~-~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 640 -T-VSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -h-hccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 1 1112111110 11111223344432 345699999997666666666665554332 3456677
Q ss_pred Eccc
Q 000427 330 TTRN 333 (1521)
Q Consensus 330 TtR~ 333 (1521)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7664
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.31 E-value=0.005 Score=68.42 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.|+|++|+|||+||..++.... ...+ .+.++. ..++...+...... .. +...+.+.+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~------~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ------GR---YKTTLQRGV-MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC------Cc---HHHHHHHHh-cC
Confidence 4677999999999999999976322 1122 233333 22333333221110 11 122232222 34
Q ss_pred eEEEEEeCCCCcCccchh--hhcccccC-CCCCcEEEEEccc
Q 000427 295 KFLLVLDDVWNRNYDDWD--QLRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 333 (1521)
.-++|+||+.-.....+. .+...+.. ...++ +|+||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 459999999654333333 23333322 12344 8888875
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.053 Score=62.24 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhh-CCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIM-GTVPAYQLKKLSDNDCLAVFVQHSLGTRDF 370 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 370 (1521)
+++-++|+|++.......+..+...+..-..++.+|++|.+ ..+.... .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 45558889999777777788888877766667766655555 4444332 223579999999999998886641 1
Q ss_pred CCChhHHHHHHHHHHhcCCChHHHHHHH
Q 000427 371 SSHKSLEEIGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 398 (1521)
+ + ...++..++|.|..+..+.
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235778899997665443
No 224
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.29 E-value=0.011 Score=58.22 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=28.7
Q ss_pred cCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEeeccccccccccccCCCCCCcc
Q 000427 1227 LDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYISECENLKILPSGLHNLHQLR 1306 (1521)
Q Consensus 1227 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 1306 (1521)
|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444455544442 233222333444444444444442 3333333444444455555533 22222223344445555
Q ss_pred eeeccc
Q 000427 1307 EISVER 1312 (1521)
Q Consensus 1307 ~L~l~~ 1312 (1521)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555443
No 225
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.28 E-value=0.0025 Score=66.77 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC----CCCC--HHHH---
Q 000427 191 GREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVS----DDFD--VIRL--- 261 (1521)
Q Consensus 191 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~--~~~~--- 261 (1521)
.+..+-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-. +... +-++
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 344556666777763 2589999999999999998888665445788888776421 1110 0111
Q ss_pred ----HHHHHHHhhcCCCCCcccHHHHHHHH------HHHhCCc---eEEEEEeCCCCcCccchhhhcccccCCCCCcEEE
Q 000427 262 ----TKTILTSIVADQNVDNLNLNSLQEKL------NKQLSGK---KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKII 328 (1521)
Q Consensus 262 ----~~~i~~~~~~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 328 (1521)
..-+.+.+..-. .....+.+.+.= ..+++++ ..+||+|++.+....++..+ +...+.|||||
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 111111111100 111122221100 1234554 46999999977655555444 44556899999
Q ss_pred EEcccH
Q 000427 329 VTTRNQ 334 (1521)
Q Consensus 329 vTtR~~ 334 (1521)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 986544
No 226
>PRK06526 transposase; Provisional
Probab=96.27 E-value=0.0051 Score=67.80 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.-+.|+|++|+|||+||..+..... +..+ .+.|+ +..++..++.... . . . .....+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~----~-~-~---~~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAH----H-A-G---RLQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHH----h-c-C---cHHHHHHHh--cc
Confidence 4689999999999999999987432 1222 22332 2333444443221 1 1 1 112223322 23
Q ss_pred eEEEEEeCCCCcCccchh--hhcccccC-CCCCcEEEEEcccH
Q 000427 295 KFLLVLDDVWNRNYDDWD--QLRRPFEV-GAPGSKIIVTTRNQ 334 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~~ 334 (1521)
.-+||+||+.......|. .+...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654323332 23333321 22344 88888753
No 227
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.26 E-value=0.016 Score=76.29 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLS---NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+... ....-...+.++.+.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 46899999999999998753210 1123467889999999999999999873 211112233344443222111
Q ss_pred HHHHHhhcCCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCC----C-------CCcEEEEE
Q 000427 264 TILTSIVADQNV--DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVG----A-------PGSKIIVT 330 (1521)
Q Consensus 264 ~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivT 330 (1521)
...+.+.... .......+...+++ ....+|+||++.....+.+..+...+..+ + ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1111111110 11111223333322 23348999999777777777777666433 1 23447777
Q ss_pred ccc
Q 000427 331 TRN 333 (1521)
Q Consensus 331 tR~ 333 (1521)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 228
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.00041 Score=72.62 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=60.9
Q ss_pred cCceeEEEEcCccccccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccc--cccccCCCceec
Q 000427 599 LQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCA--DMGNLIKLHYLN 676 (1521)
Q Consensus 599 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 676 (1521)
+.+.+.|++.||.+..| +.+.+|+.|++|.||-|+|+.| ..+..+++|+.|.|+.| .+..+-+ -+.+|++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 44556666667766655 3345667777777777777766 44666777777777765 3443322 256777788887
Q ss_pred ccCCCCcccccCC-----CCCCCcccccCceee
Q 000427 677 NSYTGSLEEMPLG-----FGKLTCLQTLCNFVV 704 (1521)
Q Consensus 677 l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 704 (1521)
|..|.-...-+.. +.-|++|+.|++..+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 7776533322222 455566666654433
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.20 E-value=0.014 Score=63.18 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
..-+++.|+|.+|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34589999999999999999998863 223346789999876 66555443
No 230
>PRK07261 topology modulation protein; Provisional
Probab=96.20 E-value=0.011 Score=61.18 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.|+|++|+||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999863
No 231
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0012 Score=69.49 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=50.2
Q ss_pred hhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeeccc--CCchhhhhhhcCCCCcceEeeccccccccc-cccCCC
Q 000427 1225 ERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMC--GNLESIAERLDNNTSLEDIYISECENLKIL-PSGLHN 1301 (1521)
Q Consensus 1225 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~ 1301 (1521)
.....+..|+.|.+.++.+++. ..+-.+++|+.|.+|.| ++...++.....+++|++|++++|++...- -..+..
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3344456677777777766544 23445667777777777 444444444455577777777776654310 012344
Q ss_pred CCCcceeecccCCC
Q 000427 1302 LHQLREISVERCGN 1315 (1521)
Q Consensus 1302 l~~L~~L~l~~n~~ 1315 (1521)
+.+|..|++.+|.-
T Consensus 115 l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 115 LENLKSLDLFNCSV 128 (260)
T ss_pred hcchhhhhcccCCc
Confidence 55555666665543
No 232
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.00055 Score=85.84 Aligned_cols=110 Identities=27% Similarity=0.410 Sum_probs=62.0
Q ss_pred CCccEEEeccCCCchh--hhhhcCCCCCccEEEeecC-CCCcccC----CCCCCccccceeeecccC-Cchhhhhhhc-C
Q 000427 1207 PSLKSLDVYRCSKLES--IAERLDNNTSLETIRISNC-ESPKILP----SGLHNLRQLRKISIQMCG-NLESIAERLD-N 1277 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n-~~~~~~p----~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~-~ 1277 (1521)
++|+.|.+.+|..... .......+++|+.|++++| ......+ .....+++|+.|+++++. +++..-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5677777777755443 3345566777888887763 2222111 123345667777777776 4444333333 3
Q ss_pred CCCcceEeeccccc-ccc-ccccCCCCCCcceeecccCCCc
Q 000427 1278 NTSLEDIYISECEN-LKI-LPSGLHNLHQLREISVERCGNL 1316 (1521)
Q Consensus 1278 l~~L~~L~L~~n~~-~~~-~~~~l~~l~~L~~L~l~~n~~~ 1316 (1521)
+++|++|.+.+|.- +.. +-.....+++|++|++++|...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 67777777766663 322 2223445666777777766554
No 233
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.15 E-value=0.024 Score=64.71 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccce-eEEEEeCCC-CCHHHHHHHHHHHhhcCC
Q 000427 196 KKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNL-KAWTCVSDD-FDVIRLTKTILTSIVADQ 273 (1521)
Q Consensus 196 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~~~~~~ 273 (1521)
..++++.+..-. +-..+.|+|..|+|||||++.+++... ..+-+. ++|+.+.+. .++.++.+.+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 345777775432 224569999999999999999887321 112233 467777655 467888888877666543
Q ss_pred CCCccc----HHHHHHHHHHHh--CCceEEEEEeCC
Q 000427 274 NVDNLN----LNSLQEKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 274 ~~~~~~----~~~~~~~l~~~l--~~~~~LlVlDdv 303 (1521)
...... .......+.+++ .+++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 211111 111111122222 589999999999
No 234
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.14 E-value=0.0023 Score=64.16 Aligned_cols=84 Identities=24% Similarity=0.158 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceE
Q 000427 217 IPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKF 296 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 296 (1521)
|.++|.+|+|||+||+.+++. ... ...-+.++...+..++....--. ... .......+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~---~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ---FEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTT---TCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-ccc---cccccccccccc-----ccee
Confidence 679999999999999999973 211 23346677777776654322111 000 000000001111 1789
Q ss_pred EEEEeCCCCcCccchhhh
Q 000427 297 LLVLDDVWNRNYDDWDQL 314 (1521)
Q Consensus 297 LlVlDdv~~~~~~~~~~l 314 (1521)
++|||++.....+.+..+
T Consensus 68 il~lDEin~a~~~v~~~L 85 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESL 85 (139)
T ss_dssp EEEESSCGG--HHHHHTT
T ss_pred EEEECCcccCCHHHHHHH
Confidence 999999965443334444
No 235
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.12 E-value=0.048 Score=71.02 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
.++.|.+..++.+.+.+.-.-. .+-...+-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 4567888887777776532100 011234568899999999999999999842 2222 22221 1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCc------Cc-cc-----hhhhcccccC--CCCCc
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR------NY-DD-----WDQLRRPFEV--GAPGS 325 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~-~~-----~~~l~~~l~~--~~~gs 325 (1521)
+++.... ......+...+...-...+.+|++|++..- .. .. ..++...+.. ...+.
T Consensus 522 ----~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1111111 111223333344444566799999998421 00 00 1122222221 22345
Q ss_pred EEEEEcccHHHHHh--h---CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCCh
Q 000427 326 KIIVTTRNQEVAKI--M---GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 326 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
.||.||...+.... . .-...+.++..+.++-.++|..+.-+ .......++ ..+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCCH----HHHHHHcCCCC
Confidence 56667766544321 1 22356888888888888888766522 211222233 44666676654
No 236
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.12 E-value=0.018 Score=63.54 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=74.9
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCc-ccccccceeE----EEEeCCCCC-----HH
Q 000427 190 YGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDK-QVLDHFNLKA----WTCVSDDFD-----VI 259 (1521)
Q Consensus 190 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~----wv~~~~~~~-----~~ 259 (1521)
-+|..+-.-..++|+.+ .+..|.+.|.+|.|||.||.+..-.. ..++.|+.++ -|.++++.. .+
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 45677777777888654 47899999999999999987654321 2344555433 133443321 11
Q ss_pred H----HHHHHHHHhhcCCCCCcccHHHHHHHHH---------HHhCCc---eEEEEEeCCCCcCccchhhhcccccCCCC
Q 000427 260 R----LTKTILTSIVADQNVDNLNLNSLQEKLN---------KQLSGK---KFLLVLDDVWNRNYDDWDQLRRPFEVGAP 323 (1521)
Q Consensus 260 ~----~~~~i~~~~~~~~~~~~~~~~~~~~~l~---------~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 323 (1521)
+ -.+.|.+.+..-...+......+...+. .+++++ .-+||+|...+- .-.++...+...+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---TpheikTiltR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---TPHELKTILTRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---CHHHHHHHHHhccC
Confidence 1 1222222221111101111122222211 223454 458999999664 34556666677789
Q ss_pred CcEEEEEcccH
Q 000427 324 GSKIIVTTRNQ 334 (1521)
Q Consensus 324 gs~iivTtR~~ 334 (1521)
||||+.|---.
T Consensus 378 GsKIVl~gd~a 388 (436)
T COG1875 378 GSKIVLTGDPA 388 (436)
T ss_pred CCEEEEcCCHH
Confidence 99999987543
No 237
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.054 Score=58.74 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=49.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc--ccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDK--QVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
-|+|.++|++|.|||+|.+++++.. |..+.|....-+.+. -..++.+...+ ...-...+-+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 4789999999999999999999865 444556555555443 23333333332 2233445555666666
Q ss_pred CCce--EEEEEeCC
Q 000427 292 SGKK--FLLVLDDV 303 (1521)
Q Consensus 292 ~~~~--~LlVlDdv 303 (1521)
.++. +.+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 6654 45667888
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.05 E-value=0.0094 Score=68.20 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..+.++|..|+|||.||.++++... ..-..++++++. +++..+...-. . ...+.... + +.+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~~---~-~~l~~- 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTAD------ELIEILREIRF-N---NDKELEEV---Y-DLLIN- 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHH------HHHHHHHHHHh-c---cchhHHHH---H-HHhcc-
Confidence 5689999999999999999998432 222245666543 23333322111 1 11111111 2 22221
Q ss_pred eEEEEEeCCCCcCccchhh--hcccccC-CCCCcEEEEEccc
Q 000427 295 KFLLVLDDVWNRNYDDWDQ--LRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 333 (1521)
-=||||||+..+....|.. +...+.. ...+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2389999997664445533 3333322 1234558888874
No 239
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.02 E-value=0.015 Score=59.75 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+||....+.++++.+..... . ...|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~-~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---S-DLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---S-TS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---C-CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 47888888888887765421 1 245679999999999999999984
No 240
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.00 E-value=0.058 Score=56.49 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred CccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKK---DVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
.++||.++.+. -|+++|..++.=++-.++-|..+|++|.|||-+|+++++...+ .| +-|.+ .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vka------t~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVKA------TEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEech------HHH--
Confidence 46789887664 3566675554334556789999999999999999999995432 22 11111 111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC--------ccchhh----hccccc--CCCCCcEEEE
Q 000427 264 TILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN--------YDDWDQ----LRRPFE--VGAPGSKIIV 329 (1521)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~----l~~~l~--~~~~gs~iiv 329 (1521)
|-+.++ +...+..+...+.-+.-++.+.+|.+.--. ..+..+ +..-+. ..+.|..-|-
T Consensus 188 -iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111111 111122222222224468999999873210 011111 222222 1345666677
Q ss_pred EcccHHHHHhh---CCCCceeCCCCChhhHHHHHHHhh
Q 000427 330 TTRNQEVAKIM---GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 330 TtR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
+|...++.... .....++..--+++|-.+++..++
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 77766654322 122446666667788888888777
No 241
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.96 E-value=0.036 Score=67.00 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=81.0
Q ss_pred ccccchhHHHHHHHHHhc---C-CCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 188 KVYGREIEKKDVVELLLR---D-DLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
++.|.+..++.+.+.... . ..-+-..++-|.++|++|+|||.+|+.+++.. .-.| +-+..+ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~------~--- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVG------K--- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhH------H---
Confidence 567777666555442211 0 00012345678999999999999999999842 2222 112211 1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCc-----cc---h----hhhcccccCCCCCcEEEEEc
Q 000427 264 TILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNY-----DD---W----DQLRRPFEVGAPGSKIIVTT 331 (1521)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~~---~----~~l~~~l~~~~~gs~iivTt 331 (1521)
+.... -......+.+.+...-...+++|++|++..-.. .+ - ..+...+.....+.-||.||
T Consensus 295 -l~~~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 -LFGGI------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred -hcccc------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11110 011122233333333345789999999843100 00 0 11122222223344566677
Q ss_pred ccHHH-----HHhhCCCCceeCCCCChhhHHHHHHHhhh
Q 000427 332 RNQEV-----AKIMGTVPAYQLKKLSDNDCLAVFVQHSL 365 (1521)
Q Consensus 332 R~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 365 (1521)
...+. .+...-...+.++.-+.++-.++|..+..
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 65432 11112345688888888888899987763
No 242
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.96 E-value=0.023 Score=59.58 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEE
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWT 250 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 250 (1521)
...+|.++|+.|.||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999997 344455555554
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.96 E-value=0.03 Score=72.96 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=92.6
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
.++.|.+..++++.+++...-. -+-...+-|.++|++|+|||++|+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 3578999999998887642100 01123466889999999999999999983 22222 222211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCc------c-----chhhhcccccC-CCCCcEE
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNY------D-----DWDQLRRPFEV-GAPGSKI 327 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~-----~~~~l~~~l~~-~~~gs~i 327 (1521)
.+ .... .......+...+.......+.+|++|++..... . ...++...+.. ...+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1100 011122233344444455678999999843110 0 11223322222 1223344
Q ss_pred EE-EcccHH-HHHhh----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHH
Q 000427 328 IV-TTRNQE-VAKIM----GTVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLA 393 (1521)
Q Consensus 328 iv-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 393 (1521)
+| ||.... +.... .-...+.+...+.++-.+++..+.-+. ....+ .....+++.+.|.--|
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCCHH
Confidence 44 554432 11111 123457777788888888887554211 11111 1245577777776533
No 244
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.035 Score=65.22 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=81.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccc-------------------ccceeE
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLD-------------------HFNLKA 248 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 248 (1521)
.++|-+....++..+..... .....+.++|+.|+||||+|.++++..--.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35777888888888886432 1234589999999999999999987421100 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCCCCc
Q 000427 249 WTCVSDDFD---VIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGS 325 (1521)
Q Consensus 249 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 325 (1521)
.++.++... ..+..+++.+....... .++.-++++|++.....+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 444444333 22333333332221110 3567789999996655455555665555556677
Q ss_pred EEEEEccc-HHHHHhhC-CCCceeCCC
Q 000427 326 KIIVTTRN-QEVAKIMG-TVPAYQLKK 350 (1521)
Q Consensus 326 ~iivTtR~-~~v~~~~~-~~~~~~l~~ 350 (1521)
++|++|.. ..+..... ....+.+.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCC
Confidence 88888874 22322221 123466666
No 245
>PRK04132 replication factor C small subunit; Provisional
Probab=95.90 E-value=0.12 Score=66.17 Aligned_cols=156 Identities=14% Similarity=0.105 Sum_probs=95.8
Q ss_pred CCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEE
Q 000427 222 MGGLGKTTLAQLVYNDKQVLDHFN-LKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVL 300 (1521)
Q Consensus 222 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVl 300 (1521)
|.|+||||+|..++++. ..+.++ .++-+++++..... ..++++..+...... -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCCEEEEE
Confidence 67899999999999852 122232 35567777654444 334444433221110 0124579999
Q ss_pred eCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHH
Q 000427 301 DDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEE 378 (1521)
Q Consensus 301 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~ 378 (1521)
|++..-+.+....+...+......+++|++|.+ ..+..... ....+.+++++.++-.+.+...+...+ ...+ .+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HH
Confidence 999777666777777766654456666666555 33332222 235799999999988887776553221 1111 35
Q ss_pred HHHHHHHhcCCChHHHHHHH
Q 000427 379 IGKKIVTKCDGLPLAAQTLG 398 (1521)
Q Consensus 379 ~~~~i~~~~~g~PLai~~~~ 398 (1521)
....|++.++|.+..+..+-
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 67889999999986554433
No 246
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.90 E-value=0.026 Score=74.08 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=75.1
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
..++|-+..++.+...+..... ..+....++.++|+.|+|||+||+.+++. .-+.-...+-++.+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 5789999999999888853321 01223456778999999999999999862 11111223334443322211111
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHHHHHhCCce-EEEEEeCCCCcCccchhhhcccccCC-----------CCCcEEEEE
Q 000427 264 TILTSIVADQN-VDNLNLNSLQEKLNKQLSGKK-FLLVLDDVWNRNYDDWDQLRRPFEVG-----------APGSKIIVT 330 (1521)
Q Consensus 264 ~i~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 330 (1521)
.-++.+.. ........+ .+.++.++ -+++||++.....+.+..+...+..+ -..+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11111110 011112223 33334444 58999999776666677776665432 134556677
Q ss_pred ccc
Q 000427 331 TRN 333 (1521)
Q Consensus 331 tR~ 333 (1521)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 247
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0041 Score=38.92 Aligned_cols=19 Identities=42% Similarity=0.868 Sum_probs=10.0
Q ss_pred cceeeccCCcccccccchh
Q 000427 625 LRYLNLSGTRIITLPESVN 643 (1521)
Q Consensus 625 Lr~L~Ls~~~i~~lP~~i~ 643 (1521)
|++|||++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 248
>PRK04296 thymidine kinase; Provisional
Probab=95.85 E-value=0.012 Score=62.08 Aligned_cols=114 Identities=12% Similarity=-0.020 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhCC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNV-DNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~l~~ 293 (1521)
.++.|+|..|.||||+|..++... ..+-..++.+. ..++.......++.+++..... .....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 578899999999999999988743 22333333332 1112222233445555432210 11233444444444 233
Q ss_pred ceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHH
Q 000427 294 KKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQE 335 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 335 (1521)
+.-+||+|.+.--..++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999432112222232222 346788999998743
No 249
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.84 E-value=0.022 Score=63.08 Aligned_cols=56 Identities=25% Similarity=0.233 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHh
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDH----FNLKAWTCVSDDFDVIRLTKTILTSI 269 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~~ 269 (1521)
.-.+.=|+|.+|+|||+|+.+++-....... =..++|++....++..++. +|+++.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 3468999999999999999888654332221 2368999999999887774 566654
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0043 Score=65.54 Aligned_cols=82 Identities=26% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCcccceeeccCC--ccc-ccccchhccccccEEecCCccchhhcccc---ccccCCCceecccCCCCcccccC----CC
Q 000427 621 DLRYLRYLNLSGT--RII-TLPESVNTLYNLHTLLLEGCLRLKKLCAD---MGNLIKLHYLNNSYTGSLEEMPL----GF 690 (1521)
Q Consensus 621 ~L~~Lr~L~Ls~~--~i~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~~~~~p~----~i 690 (1521)
.|++|++|++|.| ++. .++-...++++|++|++++| .++. ++. ...+.+|..|++..|. .+.+-. .+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf 139 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNCS-VTNLDDYREKVF 139 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccCC-ccccccHHHHHH
Confidence 3445555555555 332 33333334455555555554 2221 111 3344445555555544 221111 14
Q ss_pred CCCCcccccCceeec
Q 000427 691 GKLTCLQTLCNFVVG 705 (1521)
Q Consensus 691 ~~L~~L~~L~~~~~~ 705 (1521)
.-|++|..|..+.+.
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 445555555554443
No 251
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.82 E-value=0.027 Score=61.86 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccc-ceeEEEEeCCCCC-HHHHHHHHHHHhhcC------CCCCcccHHH----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHF-NLKAWTCVSDDFD-VIRLTKTILTSIVAD------QNVDNLNLNS---- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~i~~~~~~~------~~~~~~~~~~---- 282 (1521)
..++|+|..|+||||||+++++. .+.+| +.++++-+++... +.++.+++.+.=... ...+......
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 57899999999999999999984 44455 3556677766543 445555544321110 0001111111
Q ss_pred -HHHHHHHHh---CCceEEEEEeCC
Q 000427 283 -LQEKLNKQL---SGKKFLLVLDDV 303 (1521)
Q Consensus 283 -~~~~l~~~l---~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+|+||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 122233444 388999999999
No 252
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.79 E-value=0.11 Score=57.00 Aligned_cols=172 Identities=24% Similarity=0.252 Sum_probs=92.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCc-ccccccceeEEEEeCCCCCH-HHHHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDK-QVLDHFNLKAWTCVSDDFDV-IRLTKTI 265 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~-~~~~~~i 265 (1521)
.++|-.++..++..++..... -+...-|.|+|+.|.|||+|...+..|. ++.++| .-|........ .-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 478999999988888854321 1223567899999999999988877752 233333 33444333222 2244555
Q ss_pred HHHhhcCCC-------CCcccHHHHHHHHHHHh--CCceEEEEEeCCCCcCccchh-hhcccc----cCCCCCcEEEEEc
Q 000427 266 LTSIVADQN-------VDNLNLNSLQEKLNKQL--SGKKFLLVLDDVWNRNYDDWD-QLRRPF----EVGAPGSKIIVTT 331 (1521)
Q Consensus 266 ~~~~~~~~~-------~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~-~l~~~l----~~~~~gs~iivTt 331 (1521)
.+++..+.. .-.++...+...+...- .+-++..|+|.++-.....-. -+...| ....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 555432211 11223333333333211 223688888877322111111 111112 1234566777999
Q ss_pred ccHH-------HHHhhCCCCceeCCCCChhhHHHHHHHhh
Q 000427 332 RNQE-------VAKIMGTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 332 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
|-.- |-....-..++-++.++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9632 22222223356667788888888887765
No 253
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.77 E-value=0.0067 Score=59.02 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
||+|+|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 254
>PRK06696 uridine kinase; Validated
Probab=95.74 E-value=0.012 Score=64.16 Aligned_cols=43 Identities=28% Similarity=0.235 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 191 GREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 191 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.|++-+++|.+.+... ..++..+|+|.|.+|.||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3677788888888764 234678999999999999999999987
No 255
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.73 E-value=0.034 Score=58.73 Aligned_cols=89 Identities=20% Similarity=0.128 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhhcCCCC--CcccHHH-HHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-FDVIRLTKTILTSIVADQNV--DNLNLNS-LQEKLNK 289 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~--~~~~~~~-~~~~l~~ 289 (1521)
++||.+||+.|+||||.+..++..... +=..+..++.... ....+-++..++.++.+... ...+..+ ..+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999988877764332 2234556665432 23455566667777654210 1222323 3333433
Q ss_pred HhCCceEEEEEeCCC
Q 000427 290 QLSGKKFLLVLDDVW 304 (1521)
Q Consensus 290 ~l~~~~~LlVlDdv~ 304 (1521)
.-.++.=+|++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322223477777663
No 256
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.71 E-value=0.02 Score=64.70 Aligned_cols=85 Identities=20% Similarity=0.126 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN----VDNLNLNSLQEKL 287 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 287 (1521)
+.-+++-|+|++|+||||||.+++... ...-..++|++..+.+++. .+++++...+ ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 345799999999999999999987632 2333567899988777753 2333332210 0233455555555
Q ss_pred HHHhCC-ceEEEEEeCC
Q 000427 288 NKQLSG-KKFLLVLDDV 303 (1521)
Q Consensus 288 ~~~l~~-~~~LlVlDdv 303 (1521)
...++. ..-+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 544433 4568999998
No 257
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.71 E-value=0.058 Score=59.29 Aligned_cols=89 Identities=21% Similarity=0.139 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccccc------ceeEEEEeCCCCCHHHHHHHHHHHhhcCCC--------CCcc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF------NLKAWTCVSDDFDVIRLTKTILTSIVADQN--------VDNL 278 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~ 278 (1521)
.-.++.|+|.+|+|||++|.+++.... ..- ..++|++....++..++. ++.+....... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 457999999999999999999876321 122 467899988777765543 33333221100 0223
Q ss_pred cHHHHHHHHHHHhC----CceEEEEEeCCC
Q 000427 279 NLNSLQEKLNKQLS----GKKFLLVLDDVW 304 (1521)
Q Consensus 279 ~~~~~~~~l~~~l~----~~~~LlVlDdv~ 304 (1521)
+.+++...+.+... .+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 44555555544432 344589999983
No 258
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.65 E-value=0.023 Score=64.22 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN----VDNLNLNSLQEKL 287 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 287 (1521)
+.-+++-|+|++|+||||||.+++... ...=..++|++..+.++.. .+++++.... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 345899999999999999999987643 2233467899887766653 2344432211 1223445555555
Q ss_pred HHHhC-CceEEEEEeCCC
Q 000427 288 NKQLS-GKKFLLVLDDVW 304 (1521)
Q Consensus 288 ~~~l~-~~~~LlVlDdv~ 304 (1521)
...++ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 356699999983
No 259
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.57 E-value=0.035 Score=68.65 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998877443 234568999999999999999976
No 260
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.55 E-value=0.054 Score=54.31 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=60.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC---CCCHHHHHHHHHHHh-----hcCCCCCcccH-H----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD---DFDVIRLTKTILTSI-----VADQNVDNLNL-N---- 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~~-----~~~~~~~~~~~-~---- 281 (1521)
..|-|++..|.||||+|...+-.. ....+ .+.+|.+-. .......++.+ ..+ +........+. +
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 478888889999999998776532 11122 233333222 23333333333 111 00000000111 1
Q ss_pred --HHHHHHHHHhCCce-EEEEEeCCCCc---CccchhhhcccccCCCCCcEEEEEcccH
Q 000427 282 --SLQEKLNKQLSGKK-FLLVLDDVWNR---NYDDWDQLRRPFEVGAPGSKIIVTTRNQ 334 (1521)
Q Consensus 282 --~~~~~l~~~l~~~~-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtR~~ 334 (1521)
...+..++.+.... =|+|||++-.. ...+.+++...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222334444433 49999998321 2244566666666666778899999984
No 261
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.096 Score=60.19 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=42.6
Q ss_pred ceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHH-HHHhhC-CCCceeCCCCChhhHHHHHHHh
Q 000427 294 KKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQE-VAKIMG-TVPAYQLKKLSDNDCLAVFVQH 363 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 363 (1521)
++-++|+|++..-+......+...+.....+..+|++|.+.. +...+. ....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 334456688855544455555555544334566777776643 433322 2357899999999988888653
No 262
>PRK09354 recA recombinase A; Provisional
Probab=95.53 E-value=0.029 Score=63.92 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN----VDNLNLNSLQEKL 287 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 287 (1521)
+.-+++-|+|++|+||||||.+++... ...=..++|++....++.. .+++++.+.. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 345899999999999999999987643 2333568899988877763 3344433211 0233455555555
Q ss_pred HHHhCC-ceEEEEEeCCC
Q 000427 288 NKQLSG-KKFLLVLDDVW 304 (1521)
Q Consensus 288 ~~~l~~-~~~LlVlDdv~ 304 (1521)
...++. ..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 554443 45699999983
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.51 E-value=0.01 Score=70.69 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=40.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+++|.++.++++++.|.......+.+-+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433222234558999999999999999999987
No 264
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.51 E-value=0.039 Score=54.33 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCccEEEeccCCCchhhhhhcCCCCCccEEEeecCCCCcccCCCCCCccccceeeecccCCchhhhhhhcCCCCcceEee
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 1286 (1521)
++|+.+.+.. .+...-...|.++++|+.+.+.++ +.......|.+.++|+.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4677788764 343333466888888999998875 5555556788887899999975 444455567888999999999
Q ss_pred ccccccccccccCCCCCCcceeecccCCCcccCCCCCCCcccc
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKV 1329 (1521)
Q Consensus 1287 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L 1329 (1521)
..+ +.......|.+. .|+.+.+.++ ....-...|..+++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence 765 444445667776 8888887763 333333345555554
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.45 E-value=0.041 Score=60.03 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=32.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD 257 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 257 (1521)
.-+++.|.|.+|+||||+|.+++... ...=..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 45899999999999999999998742 22234577887655554
No 266
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.42 E-value=0.038 Score=62.99 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=42.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVL----DHFNLKAWTCVSDDFDVIRLTKTILTSIVA 271 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 271 (1521)
.-+++-|+|.+|+|||+++.+++-..... +.=..++|++....++++++. +++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 45899999999999999998876432221 111468999999999888875 45666543
No 267
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.15 Score=63.25 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=101.6
Q ss_pred Cccccchh---HHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 000427 187 AKVYGREI---EKKDVVELLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 187 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 260 (1521)
.++.|-++ |+++++++|..++. -+-.-++=+.++|++|+|||-||++++-...+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 35677765 55566666754321 02234667889999999999999999985433 23444432
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC---------------ccchhhhcccccCCC--C
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN---------------YDDWDQLRRPFEVGA--P 323 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~--~ 323 (1521)
+.++.+.+. .+ ..+.+.+...=...++.|.+|++.... .....++..-+.... .
T Consensus 379 ---EFvE~~~g~---~a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGV---GA---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhccc---ch---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 222222211 11 111222222224567888888873210 111233333222222 2
Q ss_pred CcEEEEEcccHHHHHh--hC---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHH
Q 000427 324 GSKIIVTTRNQEVAKI--MG---TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQ 395 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 395 (1521)
+--++-+|+..++... +. -++.+.++.-+.....++|..|+-... ...+..++++ |+...-|.+=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHHH
Confidence 3334455665555432 22 235688888888888999998873322 2234556666 8888888886643
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.36 E-value=0.05 Score=61.42 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVL-DHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (1521)
..++++|+|++|+||||++..++.....+ +.+ .+..|+..... ....-+....+.++.... ...+...+...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 45799999999999999999887643222 122 34555543211 122222333333332222 233444555555443
Q ss_pred hCCceEEEEEeCC
Q 000427 291 LSGKKFLLVLDDV 303 (1521)
Q Consensus 291 l~~~~~LlVlDdv 303 (1521)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777754
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.35 E-value=0.045 Score=63.30 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=41.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccccc----ceeEEEEeCCCCCHHHHHHHHHHHhh
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF----NLKAWTCVSDDFDVIRLTKTILTSIV 270 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~~~ 270 (1521)
.-.++-|+|.+|+|||++|.+++........+ ..++||+....+++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 45799999999999999999997643221111 4789999999888877643 444443
No 270
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.27 E-value=0.046 Score=69.84 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=67.3
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTK 263 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 263 (1521)
..++|-+..++.+.+.+..... ........+.++|+.|+|||++|+.++... . ...+.++++.-.+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhccccc---
Confidence 4578999999999888864211 012234578999999999999999998732 2 2233444443222111
Q ss_pred HHHHHhhcCCCC--CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhccccc
Q 000427 264 TILTSIVADQNV--DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFE 319 (1521)
Q Consensus 264 ~i~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 319 (1521)
...+.+.... .......+.+.++ +...-+|+||++.....+.+..+...+.
T Consensus 530 --~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1222221110 0111112222222 1234699999997766666776665554
No 271
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.26 E-value=0.049 Score=62.47 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=42.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccc----ccccceeEEEEeCCCCCHHHHHHHHHHHhhc
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQV----LDHFNLKAWTCVSDDFDVIRLTKTILTSIVA 271 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 271 (1521)
..-.++-|+|.+|+|||+|+.+++-.... .+.-..++|++....|++.++.+ ++++++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34578899999999999999988643222 11124789999999999888654 5565544
No 272
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.26 E-value=0.022 Score=60.75 Aligned_cols=112 Identities=14% Similarity=0.240 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.+|.|+|+.|.||||++..+... ........+++ +.++... .... ...+..... ...+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~--~~~~-~~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEF--VHES-KRSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccc--cccC-ccceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 22222333333 2222111 0000 000000000 0112233456677777767
Q ss_pred eEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHH
Q 000427 295 KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 338 (1521)
+=.|++|++.+. +.+..+... ...|..++.|+-...+..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 779999999543 333332222 224566777777655543
No 273
>PHA02244 ATPase-like protein
Probab=95.24 E-value=0.08 Score=60.29 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=29.2
Q ss_pred Cccccchh----HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 187 AKVYGREI----EKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 187 ~~~vGr~~----~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..++|... ....+..++... .-|.|+|++|+|||++|++++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 34556443 334555555332 34678999999999999999973
No 274
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.20 E-value=0.41 Score=47.43 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHHHhhhhH
Q 000427 4 IGEAILTASVDLLVNKLASEGIRLFARQEPIQADLKKWKNMLVVIKAVLADAEEKK--TDQSVKLWLGELQNLAFDVEDL 81 (1521)
Q Consensus 4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~--~~~~~~~wl~~lr~~~yd~ed~ 81 (1521)
+++|+++++++.++..+ ..........+.-+++|..+++.|.-++++.+... .+..-+.-++++.+..-+++++
T Consensus 6 ~~gaalG~~~~eLlk~v----~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAV----IDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 44555555555555444 33445555678899999999999999999988754 3444467788889999999999
Q ss_pred HHHhh
Q 000427 82 LDEFQ 86 (1521)
Q Consensus 82 ld~~~ 86 (1521)
++.|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 98874
No 275
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.19 E-value=0.25 Score=55.74 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=37.4
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
++=+......+..++... +.|.|.|.+|+||||+|+.++.. .... .+.|.++...+..
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~ 104 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRI 104 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChh
Confidence 343444556677777432 46899999999999999999873 3222 2345555554443
No 276
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.16 E-value=0.094 Score=54.30 Aligned_cols=114 Identities=19% Similarity=0.245 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc---ccccc---cc--eeEEEEeCCCCCHHHHHHHHHHHhhcCCC---C--CcccHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDK---QVLDH---FN--LKAWTCVSDDFDVIRLTKTILTSIVADQN---V--DNLNLN 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---~--~~~~~~ 281 (1521)
.+++|+|+.|.|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... . ...+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 689999999999999999986421 11111 11 12232 11 345565553221 0 111112
Q ss_pred -HHHHHHHHHhCCc--eEEEEEeCCCCc-CccchhhhcccccC-CCCCcEEEEEcccHHHHH
Q 000427 282 -SLQEKLNKQLSGK--KFLLVLDDVWNR-NYDDWDQLRRPFEV-GAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 282 -~~~~~l~~~l~~~--~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 338 (1521)
...-.+.+.+..+ +=++++|+.-.. +....+.+...+.. ...|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223344555566 678888987432 12223334333332 124677899999877654
No 277
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.041 Score=57.57 Aligned_cols=79 Identities=23% Similarity=0.214 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcC-CCCCcccHHHHHHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVAD-QNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~l~~~ 290 (1521)
.++.+|+|.|.+|.||||+|+.++. .+.... ++-++- +++-...-.....+..... ....+.+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4568999999999999999999998 333231 111111 1111111011111111111 122556777788888888
Q ss_pred hCCce
Q 000427 291 LSGKK 295 (1521)
Q Consensus 291 l~~~~ 295 (1521)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 278
>PRK13695 putative NTPase; Provisional
Probab=95.12 E-value=0.027 Score=58.88 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 279
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.085 Score=58.26 Aligned_cols=90 Identities=23% Similarity=0.123 Sum_probs=57.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH-hhcCCCCCcccHH---HHHHH
Q 000427 211 DGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTS-IVADQNVDNLNLN---SLQEK 286 (1521)
Q Consensus 211 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~---~~~~~ 286 (1521)
=+.-+++=|+|+.|.||||+|.+++-..+ ..-..++|++.-..+++.++.. ++.. +..-.-....+.+ +..+.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHH
Confidence 34568999999999999999999876433 3334789999999999876633 3333 2111111223333 33444
Q ss_pred HHHHhCCceEEEEEeCC
Q 000427 287 LNKQLSGKKFLLVLDDV 303 (1521)
Q Consensus 287 l~~~l~~~~~LlVlDdv 303 (1521)
+.+....+--|+|+|.|
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444444569999998
No 280
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.049 Score=67.97 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=82.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc-----ceeEEEEeCCCCCHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF-----NLKAWTCVSDDFDVIRL 261 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 261 (1521)
..++||++|++++++.|..... +-+ .++|-+|||||++|.-++... +.+.- +..++. .|+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----LD~g-- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----LDLG-- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----ecHH--
Confidence 4589999999999999976532 112 478999999999987777631 11111 111110 0111
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCceEEEEEeCCCCc----C-----ccchhhhcccccCCCCCcEEEEEc
Q 000427 262 TKTILTSIVADQNVDNLNLNSLQEKLNKQL-SGKKFLLVLDDVWNR----N-----YDDWDQLRRPFEVGAPGSKIIVTT 331 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----~-----~~~~~~l~~~l~~~~~gs~iivTt 331 (1521)
.+..... -..+.++....+.+.+ +.++..|++|.++.- . .+.-.-++..+..+ .--.|-.||
T Consensus 236 ------~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT 307 (786)
T COG0542 236 ------SLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATT 307 (786)
T ss_pred ------HHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEecc
Confidence 1111111 1223344333333333 345899999998542 0 11222233333222 222344455
Q ss_pred ccHHHHHhh-------CCCCceeCCCCChhhHHHHHHHh
Q 000427 332 RNQEVAKIM-------GTVPAYQLKKLSDNDCLAVFVQH 363 (1521)
Q Consensus 332 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 363 (1521)
-+ +--+.+ ...+.+.+..-+.+++...++-.
T Consensus 308 ~~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LD-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 43 322222 23467888999999998888643
No 281
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.08 E-value=0.048 Score=65.74 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 000427 211 DGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 211 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (1521)
.+.-+++.++|++|+||||||.-+++.. .| .++=|++|+..+...+-..|...+....-.++
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 3456899999999999999999999743 23 35668888888777776666665543322111
Q ss_pred hCCceEEEEEeCCCCc
Q 000427 291 LSGKKFLLVLDDVWNR 306 (1521)
Q Consensus 291 l~~~~~LlVlDdv~~~ 306 (1521)
.+++.-+|+|.+...
T Consensus 385 -dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGA 399 (877)
T ss_pred -CCCcceEEEecccCC
Confidence 257788999999554
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.08 E-value=0.099 Score=54.84 Aligned_cols=118 Identities=19% Similarity=0.072 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC-------------CCccc-H
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN-------------VDNLN-L 280 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~-~ 280 (1521)
.+++|+|..|.|||||++.++.-.. .-...+++.-. ++......+-..++--.+ ....+ -
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999987421 11222332111 111110111111110000 01111 1
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEcccHHHHH
Q 000427 281 NSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 281 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 338 (1521)
+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22233455666677789999998543 11223333333332223677888888877664
No 283
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.073 Score=61.58 Aligned_cols=53 Identities=30% Similarity=0.305 Sum_probs=38.5
Q ss_pred ccccch---hHHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc
Q 000427 188 KVYGRE---IEKKDVVELLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV 240 (1521)
Q Consensus 188 ~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 240 (1521)
++-|-| .|+++|+++|..+.. -++.=++=|.++|++|.|||-||++|+-...+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 344555 477888999976532 12333567899999999999999999986543
No 284
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.013 Score=36.73 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=18.9
Q ss_pred ceeEEEEcCccccccCccccCC
Q 000427 601 RLRVFSLRGYHIYELPDSIGDL 622 (1521)
Q Consensus 601 ~Lr~L~L~~~~i~~lp~~i~~L 622 (1521)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 285
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.23 Score=59.77 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=78.5
Q ss_pred ccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 260 (1521)
++=|-++-+.++.+...-+-. -+-..++-|..+|++|+|||++|+++++. .+-.| +.+..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp----- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP----- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH-----
Confidence 344566666666544432110 02245678899999999999999999984 33344 222211
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC-------cc----chhhhcccccCCC--CCcEE
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN-------YD----DWDQLRRPFEVGA--PGSKI 327 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~----~~~~l~~~l~~~~--~gs~i 327 (1521)
+++.... ..+...+.+.+++.=+--+.+|.||.+..-. .. ...++..-+.... ++--|
T Consensus 503 ---EL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ---ELFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ---HHHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1111111 1122223333333333445788888773210 00 0122222222211 23334
Q ss_pred EEEcccHHHHH--hhC---CCCceeCCCCChhhHHHHHHHhhhC
Q 000427 328 IVTTRNQEVAK--IMG---TVPAYQLKKLSDNDCLAVFVQHSLG 366 (1521)
Q Consensus 328 ivTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 366 (1521)
|-.|..++... .+. .+..+.++.-+.+.-.++|+.++-+
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 44444333322 223 3456777766777778899988743
No 286
>PRK06762 hypothetical protein; Provisional
Probab=95.05 E-value=0.21 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999987
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.04 E-value=0.11 Score=51.97 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.+++|+|..|.|||||++.+..... .....+|+.-.. .+.--. +-..-+...-.+.+.+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999987421 223333332100 000000 0111122233345556667
Q ss_pred eEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEcccHHHHH
Q 000427 295 KFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 295 ~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 338 (1521)
+-++++|+.-.. +.+....+...+... +..||++|.+.+...
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 778999987432 223344444444332 246888888766554
No 288
>PRK08233 hypothetical protein; Provisional
Probab=95.04 E-value=0.048 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.03 E-value=0.081 Score=57.09 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=73.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC-----CCCHHHHHHHHHHHhhcCCCC-----CcccHHHH-
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD-----DFDVIRLTKTILTSIVADQNV-----DNLNLNSL- 283 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~- 283 (1521)
.+++|||-.|.||||+|+.+..= .+--...++..-.+ .....+-..++++.++..... ..-+-.+.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 68999999999999999999862 22222333333211 122334455666666543211 11122222
Q ss_pred HHHHHHHhCCceEEEEEeCCCCcCc-cchhhhcccccC--CCCCcEEEEEcccHHHHHhhCC
Q 000427 284 QEKLNKQLSGKKFLLVLDDVWNRNY-DDWDQLRRPFEV--GAPGSKIIVTTRNQEVAKIMGT 342 (1521)
Q Consensus 284 ~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 342 (1521)
.-.+.+.+.-++=+||.|..-+... ..-.++...+.. ...|-..+..|-+-.+++.+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3346677888999999998743311 112333333332 2357778999999888887654
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.09 Score=54.69 Aligned_cols=118 Identities=21% Similarity=0.214 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC--CCCHHHHHHHHHHHhhc---CCCCCc-------cc-HH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD--DFDVIRLTKTILTSIVA---DQNVDN-------LN-LN 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~~---~~~~~~-------~~-~~ 281 (1521)
.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...++. ....-. .+ -+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 589999999999999999998732 1223333322110 0011111 111110 000000 11 11
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEcccHHHHHh
Q 000427 282 SLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 282 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 339 (1521)
...-.+.+.+..++-++++|+-... +....+.+...+.....+..||++|.+.+....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1222345566677789999997543 122233343333322235678888888776653
No 291
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.03 E-value=0.14 Score=53.76 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=64.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE---eCCCCCHHHHHH------HHHHHhhcCCC----CCccc-H
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTC---VSDDFDVIRLTK------TILTSIVADQN----VDNLN-L 280 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~------~i~~~~~~~~~----~~~~~-~ 280 (1521)
.+++|+|..|.|||||++.++... ......+++. +.. .+...... ++++.++.... ....+ -
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 589999999999999999998732 2233333332 211 12222111 13444332211 01112 2
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccCC-CC-CcEEEEEcccHHHHH
Q 000427 281 NSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVG-AP-GSKIIVTTRNQEVAK 338 (1521)
Q Consensus 281 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 338 (1521)
+...-.+.+.+...+-++++|+.-.. +.+..+.+...+... .. |..||++|.+.+...
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22333455666778889999997432 223334444444321 12 667888888866543
No 292
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.35 Score=57.33 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=64.0
Q ss_pred CccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLS------NDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIR 260 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 260 (1521)
.++=|.++.+.++.+++..-... +-..++=|.++|++|+|||.||+++++...+ .| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecch-----
Confidence 35668888888887776542110 2234567889999999999999999985322 23 333322
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCC
Q 000427 261 LTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWN 305 (1521)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 305 (1521)
+|+..+ ...+.+.+.+.+.+....-++++++|++.-
T Consensus 258 ---eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 233445566666677778899999999843
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.065 Score=62.02 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-FDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
-.+++++|+.|+||||++..++.....+.....+..++.... ....+-++...+.++.... ...+..++...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHHH-hc
Confidence 369999999999999999999874221111234555553221 2233444444555544332 22233334444433 34
Q ss_pred CceEEEEEeCCCC
Q 000427 293 GKKFLLVLDDVWN 305 (1521)
Q Consensus 293 ~~~~LlVlDdv~~ 305 (1521)
++ -+|++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566998843
No 294
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.17 Score=59.89 Aligned_cols=155 Identities=20% Similarity=0.290 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
+.=|.+||++|+|||-||++|++.. +-.| ++|..+ + ++.... ..+...+...+++.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----E----LlNkYV------GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----E----LLNKYV------GESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----H----HHHHHh------hhHHHHHHHHHHHhhcC
Confidence 4568899999999999999999943 3344 444332 1 122111 12234445555555567
Q ss_pred ceEEEEEeCCCCc-----Cccch------hhhcccccC--CCCCcEEEEEcccHHHHHh--hC---CCCceeCCCCChhh
Q 000427 294 KKFLLVLDDVWNR-----NYDDW------DQLRRPFEV--GAPGSKIIVTTRNQEVAKI--MG---TVPAYQLKKLSDND 355 (1521)
Q Consensus 294 ~~~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~ 355 (1521)
-+++|.||.+..- +...| .++..-+.. ...|.-||-+|..+++... .. -....-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998431 11112 233333322 3467778888877666432 12 23566777777888
Q ss_pred HHHHHHHhhhCCCC-CCCChhHHHHHHHHHHhcCCCh
Q 000427 356 CLAVFVQHSLGTRD-FSSHKSLEEIGKKIVTKCDGLP 391 (1521)
Q Consensus 356 ~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~P 391 (1521)
-.++++...-.... -.++-.++++|+. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888887743221 1223356666553 3555543
No 295
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.98 E-value=0.072 Score=60.96 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCCcHHH-HHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTT-LAQLVYNDKQVLDHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
-++|++||+.|||||| ||+..+.-....++ ..++.++...-. ...+=++..++-++.+.. ...+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 5899999999999995 56655542211222 345566553321 223333344444444433 445666666666543
Q ss_pred CCceEEEEEeCCCCc
Q 000427 292 SGKKFLLVLDDVWNR 306 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~ 306 (1521)
++. =+|.+|=+...
T Consensus 280 ~~~-d~ILVDTaGrs 293 (407)
T COG1419 280 RDC-DVILVDTAGRS 293 (407)
T ss_pred hcC-CEEEEeCCCCC
Confidence 333 45666776543
No 296
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.98 E-value=0.15 Score=51.26 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHhCCceEEEEEeCCCCc-Cc-cchhhhcccccC-CCCCcEEEEEcccHHHHHhhC
Q 000427 279 NLNSLQEKLNKQLSGKKFLLVLDDVWNR-NY-DDWDQLRRPFEV-GAPGSKIIVTTRNQEVAKIMG 341 (1521)
Q Consensus 279 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~-~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~ 341 (1521)
.-++..-.+.+.+-+++-+++=|.---. ++ -.|+- ...|.. +..|..||++|.+.++...+.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3455556677888889999999864211 11 23443 333332 457999999999999887764
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.97 E-value=0.091 Score=54.31 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD 257 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 257 (1521)
++.|+|.+|+||||+|..++... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998743 22334577777765543
No 298
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.96 E-value=0.023 Score=56.66 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=59.3
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccc-ccccceeEEEEeCCCCCHHHHHHHHHHH
Q 000427 190 YGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV-LDHFNLKAWTCVSDDFDVIRLTKTILTS 268 (1521)
Q Consensus 190 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 268 (1521)
||+-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-------------
Confidence 466666666666664421 12356789999999999999998874321 1122110 01000
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccC-CCCCcEEEEEccc
Q 000427 269 IVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~ 333 (1521)
. .+.+.+ . +.--|+++|+..-+.+....+...+.. .....|+|.||+.
T Consensus 61 ----------~----~~~l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 61 ----------P----AELLEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ----------C----HHHHHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ----------c----HHHHHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0 111111 1 334577999966555555666666653 2567899999985
No 299
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.92 E-value=0.052 Score=57.69 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh---
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL--- 291 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l--- 291 (1521)
+++.|.|++|.||||+++.+...... . ...+.+...... ....+.+..+. ...............-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~~----Aa~~L~~~~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTNK----AAKELREKTGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSHH----HHHHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcHH----HHHHHHHhhCc----chhhHHHHHhcCCcccccc
Confidence 68889999999999999988763222 2 123333332222 22223333221 1111111110000000
Q ss_pred ---CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc
Q 000427 292 ---SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 292 ---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 333 (1521)
..++-+||+|++...+...+..+...... .|.|+|+.=-.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12334999999976655566666655544 47788776543
No 300
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.057 Score=59.69 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 293 (1521)
..-+.++|.+|+|||.||.++.++.- +..+ .+.++++ .+++.++...... ......+.+.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~---------~~~~~~l~~~l~- 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE---------GRLEEKLLRELK- 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc---------CchHHHHHHHhh-
Confidence 45689999999999999999999543 2222 3445543 4455555544432 111122222211
Q ss_pred ceEEEEEeCCCCcCccchh
Q 000427 294 KKFLLVLDDVWNRNYDDWD 312 (1521)
Q Consensus 294 ~~~LlVlDdv~~~~~~~~~ 312 (1521)
+-=||||||+.-.....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2238999999765555554
No 301
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.023 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDK 238 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~ 238 (1521)
--|+|.||+|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 568999999999999999998743
No 302
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.26 Score=51.20 Aligned_cols=190 Identities=15% Similarity=0.158 Sum_probs=94.8
Q ss_pred ccccc-hhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 188 KVYGR-EIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 188 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
++||+ +..+++|.+.+.-+-. -+-.+++-+.++|++|.|||-||++|++. ..+.|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 35554 5556665554422110 02345677889999999999999999973 23455666653
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCceEEEEEeCCCCcC--------ccc------hhhhcccccC--CC
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNK-QLSGKKFLLVLDDVWNRN--------YDD------WDQLRRPFEV--GA 322 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--------~~~------~~~l~~~l~~--~~ 322 (1521)
++ .+...+.. ....+.+.- .-..-+-.|..|.+.+.. ..+ .-++...+.. ..
T Consensus 216 el----vqk~igeg-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 EL----VQKYIGEG-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HH----HHHHhhhh-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 22 22211111 011111111 112346678888774310 001 1122222322 23
Q ss_pred CCcEEEEEcccHHHHHhh--C---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHH
Q 000427 323 PGSKIIVTTRNQEVAKIM--G---TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTL 397 (1521)
Q Consensus 323 ~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 397 (1521)
+.-+||.+|..-++.... . .++.++.++-+++.-.++++-+.-. -+-..--.++.+|+++....|.---++.+=
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk-mnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK-MNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh-hchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 567888888776654321 2 2356788887777777777766521 111222334555554433333233333333
Q ss_pred Hhh
Q 000427 398 GGL 400 (1521)
Q Consensus 398 ~~~ 400 (1521)
|++
T Consensus 364 agm 366 (404)
T KOG0728|consen 364 AGM 366 (404)
T ss_pred hhH
Confidence 443
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.85 E-value=0.16 Score=52.45 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccc-ccc--cc---eeEEEEeCCCCCH--HHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQV-LDH--FN---LKAWTCVSDDFDV--IRLTKTILTSIVADQNVDNLNLNSLQEK 286 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 286 (1521)
.+++|+|..|.|||||++.++..... .+. ++ .+.++ .+.... ..+...+.-. ... .-..-+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~-~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD-VLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC-CCCHHHHHHHH
Confidence 58999999999999999999874221 111 11 12222 222211 1222222110 111 11222333344
Q ss_pred HHHHhCCceEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEcccHHHHH
Q 000427 287 LNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 287 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 338 (1521)
+.+.+..++=++++|+--.. +....+.+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55666677788899987432 122233343333332 456888888876654
No 304
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.80 E-value=0.029 Score=57.73 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=43.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHHhCC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQ--NVDNLNLNSLQEKLNKQLSG 293 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~l~~ 293 (1521)
++.|.|.+|.||||+|..+.... .. .++++.-....+ .+..+.|........ ....+....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999998631 11 233444333333 334444433322211 11112222344445443333
Q ss_pred ceEEEEEeCC
Q 000427 294 KKFLLVLDDV 303 (1521)
Q Consensus 294 ~~~LlVlDdv 303 (1521)
.-++|+|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237889987
No 305
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.80 E-value=0.56 Score=50.16 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=110.0
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCc----ccccccceeEEEEeCCC---------
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDK----QVLDHFNLKAWTCVSDD--------- 255 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 255 (1521)
+.++++....+..... .+..+-..++|+.|.||-|.+..+.+.. -.+-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666665553 2346778899999999999887665521 01112233445433322
Q ss_pred -C-----------CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceE-EEEEeCCCCcCccchhhhcccccCCC
Q 000427 256 -F-----------DVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKF-LLVLDDVWNRNYDDWDQLRRPFEVGA 322 (1521)
Q Consensus 256 -~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 322 (1521)
+ ..+.+.++++.++....+.+. -..+.| ++|+-.+.+-..+.-..+++....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 123444455554443322111 012344 45555554333344445555444445
Q ss_pred CCcEEEEEcccH-HHHHhhC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhh
Q 000427 323 PGSKIIVTTRNQ-EVAKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGL 400 (1521)
Q Consensus 323 ~gs~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 400 (1521)
..+|+|+...+. .+-.... ..-.+.+...+++|....+++.+-..+- .-+ ++++.+|+++++|.---...+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 567777654331 1111111 1124788999999999999887643331 112 688999999999876444333333
Q ss_pred hCCC--C--------ChhHHHHHHhc
Q 000427 401 LRGN--H--------DRSEWEDVLSS 416 (1521)
Q Consensus 401 l~~~--~--------~~~~w~~~l~~ 416 (1521)
++-+ + ..-+|+-++.+
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHH
Confidence 2221 1 14578877664
No 306
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.80 E-value=0.026 Score=58.16 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=29.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEEEEeCCCCC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVL-DHFNLKAWTCVSDDFD 257 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~ 257 (1521)
..++.++|+.|+|||.+|+.++. ... +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46889999999999999999987 333 3344555566554433
No 307
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.79 E-value=0.069 Score=61.13 Aligned_cols=57 Identities=21% Similarity=0.053 Sum_probs=40.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhh
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLD----HFNLKAWTCVSDDFDVIRLTKTILTSIV 270 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 270 (1521)
.-.++.|+|.+|+||||++..++....... .-..++|++....++..++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 458999999999999999998875322211 1135799998888887763 44555543
No 308
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.78 E-value=0.0025 Score=65.07 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=76.2
Q ss_pred ccccCceeEEEEcCccccccCccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCCCcee
Q 000427 596 LFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYL 675 (1521)
Q Consensus 596 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 675 (1521)
+..++..++||++.|++..+-..|+-+..|..||++.|.|..+|..++.+..++.+++..| .....|.++++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4477889999999999888888888899999999999999999999999999999999886 788999999999999999
Q ss_pred cccCCC
Q 000427 676 NNSYTG 681 (1521)
Q Consensus 676 ~l~~~~ 681 (1521)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 988876
No 309
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.11 Score=65.81 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=71.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCC--CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSND--GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
..++|-++.+..|.+.+.....+.. .....+.+.|+.|+|||-||++++. -+-+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 4678888888888888876543212 2567788999999999999999986 3333334444444333 222
Q ss_pred HHHHhhcCCCC-CcccHHHHHHHHHHHhCCceE-EEEEeCCCCcCccchhhhccccc
Q 000427 265 ILTSIVADQNV-DNLNLNSLQEKLNKQLSGKKF-LLVLDDVWNRNYDDWDQLRRPFE 319 (1521)
Q Consensus 265 i~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~ 319 (1521)
+.+-++.+..- ..... ..+.+.++.++| +|+||||...+.+....+...+.
T Consensus 633 vskligsp~gyvG~e~g----g~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEG----GQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcccccchhH----HHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 22222322211 11222 245556666665 77789997666555554444443
No 310
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.73 E-value=0.089 Score=60.86 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhh
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLD----HFNLKAWTCVSDDFDVIRLTKTILTSIV 270 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 270 (1521)
.-.++-|+|.+|+||||++.+++....... .=..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 458999999999999999999876432211 11278999999888887654 4444443
No 311
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.69 E-value=0.23 Score=54.18 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=71.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
+.+.++|+.|+|||+-++.+++. ....+.+..+..+....+...+......... ....+....+...+++.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHccC
Confidence 47889999999999999999983 2334445677777777777777776655432 34555566666677888
Q ss_pred eEEEEEeCCCCcCccchhhhcccccCCCCC
Q 000427 295 KFLLVLDDVWNRNYDDWDQLRRPFEVGAPG 324 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 324 (1521)
.-+|+.|+...-.+...+.++......+-|
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 889999998766666777776554443333
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.67 E-value=0.079 Score=54.50 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD--FDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
.+++|+|..|.|||||.+.++... ......+++.-... .+..+..+ ..++... +-..-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHHh
Confidence 589999999999999999998732 22334444322111 11111111 1111110 11112223334556666
Q ss_pred CceEEEEEeCCCCc-CccchhhhcccccCC-CCCcEEEEEcccHHHHH
Q 000427 293 GKKFLLVLDDVWNR-NYDDWDQLRRPFEVG-APGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 338 (1521)
.++-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77788999997443 222333444444321 23667888888876443
No 313
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.57 E-value=0.16 Score=59.35 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccc--ccceeEEEEeCCCCCHH--HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLD--HFNLKAWTCVSDDFDVI--RLTKTILTSIVADQNVDNLNLNSLQEKLN 288 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 288 (1521)
..++|.++|+.|+||||.+..++....... +=..+..+++. .+... .-++..++.++.+.. .....+++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 457999999999999999988876332211 11234444443 33322 224444554544322 2334455555555
Q ss_pred HHhCCceEEEEEeCCCCc
Q 000427 289 KQLSGKKFLLVLDDVWNR 306 (1521)
Q Consensus 289 ~~l~~~~~LlVlDdv~~~ 306 (1521)
+. .+.-+|++|.....
T Consensus 251 ~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKS 266 (388)
T ss_pred Hh--CCCCEEEEcCCCCC
Confidence 43 34568899988543
No 314
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.56 E-value=0.19 Score=59.81 Aligned_cols=26 Identities=35% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..+.+|.++|.+|+||||+|..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999998864
No 315
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.27 Score=61.22 Aligned_cols=133 Identities=17% Similarity=0.107 Sum_probs=75.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
...+.+.++|++|.|||.||+++++ .....|-. +... . ++... -......+...+...-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~-----v~~~----~----l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS-----VKGS----E----LLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE-----eeCH----H----Hhccc------cchHHHHHHHHHHHHH
Confidence 3456899999999999999999998 33334432 2111 1 11111 1122233344445555
Q ss_pred CCceEEEEEeCCCCc-----Cc------cchhhhcccccC--CCCCcEEEEEcccHHHHHhh-----CCCCceeCCCCCh
Q 000427 292 SGKKFLLVLDDVWNR-----NY------DDWDQLRRPFEV--GAPGSKIIVTTRNQEVAKIM-----GTVPAYQLKKLSD 353 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~-----~~------~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~ 353 (1521)
+..+..|.+|++..- .. ....++...+.. ...+..||-||-........ .-...+.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678999999998321 00 112223333322 22333455555544433211 2245788899999
Q ss_pred hhHHHHHHHhhh
Q 000427 354 NDCLAVFVQHSL 365 (1521)
Q Consensus 354 ~~~~~lf~~~~~ 365 (1521)
++..+.|..+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998873
No 316
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.53 E-value=0.16 Score=58.45 Aligned_cols=58 Identities=21% Similarity=0.061 Sum_probs=42.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLD----HFNLKAWTCVSDDFDVIRLTKTILTSIVA 271 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 271 (1521)
.-.++-|+|.+|+|||++|..++-...... .=..++|++....++++++ .++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 457889999999999999988874322111 1126899999999988776 455666543
No 317
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.43 E-value=0.21 Score=59.74 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD-VIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
.+++.++|++|+||||++..++........-..+..|+...... ...-++...+.++.... ...+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 36999999999999999888776322012223455666533211 11222233333333221 223344555555543 3
Q ss_pred CceEEEEEeCCCC
Q 000427 293 GKKFLLVLDDVWN 305 (1521)
Q Consensus 293 ~~~~LlVlDdv~~ 305 (1521)
..=+|++|....
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 345788997643
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.42 E-value=0.16 Score=52.68 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE------eCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTC------VSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLN 288 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 288 (1521)
.+++|+|..|.|||||++.+..-.. .....+++. +.+... -..-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 5899999999999999999986321 122222221 111110 111122233455
Q ss_pred HHhCCceEEEEEeCCCCc-CccchhhhcccccC--CCCCcEEEEEcccHHHHHh
Q 000427 289 KQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEV--GAPGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 289 ~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~ 339 (1521)
+.+..++-++++|+--.. +....+.+...+.. ...+..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 566677789999987433 11222333333322 1123567888877665543
No 319
>PRK13948 shikimate kinase; Provisional
Probab=94.42 E-value=0.27 Score=51.14 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 320
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.41 E-value=0.072 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..++.++|||++|+|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.17 Score=60.60 Aligned_cols=88 Identities=18% Similarity=0.081 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH--HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDV--IRLTKTILTSIVADQNVDNLNLNSLQEKLNKQ 290 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (1521)
...+|+|+|++|+||||++..++.....+.....+..++.. .+.. ..-++...+.++.... ...+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh
Confidence 34799999999999999998887632111112234444432 2221 1222222222222211 223334455444433
Q ss_pred hCCceEEEEEeCCC
Q 000427 291 LSGKKFLLVLDDVW 304 (1521)
Q Consensus 291 l~~~~~LlVlDdv~ 304 (1521)
.+ .=+|++|...
T Consensus 427 -~~-~DLVLIDTaG 438 (559)
T PRK12727 427 -RD-YKLVLIDTAG 438 (559)
T ss_pred -cc-CCEEEecCCC
Confidence 33 4588888874
No 322
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.41 E-value=0.053 Score=58.36 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999874
No 323
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.41 E-value=0.039 Score=65.17 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 4899999999999998765 35789999999999999999873
No 324
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.39 E-value=0.076 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 325
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.076 Score=63.71 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD--VIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
..-|.|.|+.|+|||+||+++++... +++.-.+.+|+++.-.. .+.+++ .+...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk------------------~l~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK------------------FLNNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH------------------HHHHHHHHHH
Confidence 45688999999999999999998543 45555566677664321 121111 1222334456
Q ss_pred CCceEEEEEeCCC
Q 000427 292 SGKKFLLVLDDVW 304 (1521)
Q Consensus 292 ~~~~~LlVlDdv~ 304 (1521)
...+-+|||||+.
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6788999999983
No 326
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.37 E-value=0.11 Score=53.31 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=44.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH--hhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 217 IPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTS--IVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
+.|.|..|.|||++|.++... ....++++.-.+.++.+ +.+.|..- .........+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999999763 22356677666666543 33333331 1111111122233344444222 2 2
Q ss_pred eEEEEEeCC
Q 000427 295 KFLLVLDDV 303 (1521)
Q Consensus 295 ~~LlVlDdv 303 (1521)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 327
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.36 E-value=0.26 Score=52.40 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccC--CCCCcEEEEEcccHHHHHhhC
Q 000427 281 NSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEV--GAPGSKIIVTTRNQEVAKIMG 341 (1521)
Q Consensus 281 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 341 (1521)
++..-++.+.+-..+-+|+-|+--.. +.+.-+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34455677888888899999975221 12233334444433 245788999999999998653
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.36 E-value=0.18 Score=56.39 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH--HHHHHHHHHhhcCC--CCCcccHHH-HHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI--RLTKTILTSIVADQ--NVDNLNLNS-LQEK 286 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~~~~~~--~~~~~~~~~-~~~~ 286 (1521)
.+.++|.++|++|+||||++..++... ...-..+.++++. .+... +-++..++..+... .....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346899999999999999998887632 2222345555543 33222 22333344443221 001122222 2333
Q ss_pred HHHHhCCceEEEEEeCCCC
Q 000427 287 LNKQLSGKKFLLVLDDVWN 305 (1521)
Q Consensus 287 l~~~l~~~~~LlVlDdv~~ 305 (1521)
+........=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4443334455788887743
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.36 E-value=0.25 Score=56.59 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=53.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
+.++++|+|+.|+||||++..++..... .-..+.+|++.... ....-++..++.++.... ...+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 4689999999999999999988864321 21345566654322 223344445555443322 2345566666554432
Q ss_pred -CCceEEEEEeCCCC
Q 000427 292 -SGKKFLLVLDDVWN 305 (1521)
Q Consensus 292 -~~~~~LlVlDdv~~ 305 (1521)
.+..=+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13446888898754
No 330
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.35 E-value=0.11 Score=60.04 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=49.9
Q ss_pred cCccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc---ceeEEEEeC-
Q 000427 186 EAKVYGREIEKKDVVELLLRD--------DLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF---NLKAWTCVS- 253 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~- 253 (1521)
+..+||.++.++.+...+... +....-.++-|.++|++|+|||++|+.++.. ....| +...++..+
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCc
Confidence 346889988888887666532 0001123467899999999999999999873 33333 222222221
Q ss_pred CCCCHHHHHHHHHHHh
Q 000427 254 DDFDVIRLTKTILTSI 269 (1521)
Q Consensus 254 ~~~~~~~~~~~i~~~~ 269 (1521)
...+.+.+++.+.+..
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2235666666665543
No 331
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.30 E-value=0.12 Score=58.25 Aligned_cols=86 Identities=19% Similarity=0.080 Sum_probs=51.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNV----DNLNLNSLQEKL 287 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~l 287 (1521)
+.-+++-|+|+.|+||||||.++... ....-..++|++....++... +++++.+.+. .+...++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999998873 333345688999988877643 3444433211 223344444444
Q ss_pred HHHhCC-ceEEEEEeCCC
Q 000427 288 NKQLSG-KKFLLVLDDVW 304 (1521)
Q Consensus 288 ~~~l~~-~~~LlVlDdv~ 304 (1521)
.+.++. ..-++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 444543 34588999983
No 332
>PRK14974 cell division protein FtsY; Provisional
Probab=94.29 E-value=0.2 Score=57.39 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH--HHHHHHHHHHhhcCCC--CCcccHHH-HHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDV--IRLTKTILTSIVADQN--VDNLNLNS-LQEKL 287 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~--~~~~~~~~-~~~~l 287 (1521)
++.+|.++|+.|+||||++..++....- ..+ .++.+. .+.+.. .+-++..+..++.... ....+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888763221 223 233343 233322 2334445555553321 11222222 22333
Q ss_pred HHHhCCceEEEEEeCCCCc
Q 000427 288 NKQLSGKKFLLVLDDVWNR 306 (1521)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~ 306 (1521)
........=+|++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3222222238999988543
No 333
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.28 E-value=0.13 Score=53.61 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=59.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC--CCCHHHHHHHHHHHhhcCCCC-C--c-------cc-HH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD--DFDVIRLTKTILTSIVADQNV-D--N-------LN-LN 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~-~--~-------~~-~~ 281 (1521)
.+++|+|..|.|||||++.++... ......+++.-.. ....... ...+..-.+. . . .+ -+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHH
Confidence 589999999999999999998632 1222223221110 0111111 1111110000 0 0 11 11
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccC-CCCCcEEEEEcccHHHHH
Q 000427 282 SLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEV-GAPGSKIIVTTRNQEVAK 338 (1521)
Q Consensus 282 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 338 (1521)
...-.+.+.+..++=++++|+.... +......+...+.. ...|..||++|.+.+...
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2233445566667778999997543 12223333333332 123667888888877664
No 334
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.17 E-value=0.44 Score=49.36 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=68.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC-------------------CCC-------------------
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVS-------------------DDF------------------- 256 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~------------------- 256 (1521)
.|++|+|+.|.|||||.+.+..=.. .=...+||.-. +.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 6999999999999999999865221 11233444321 111
Q ss_pred ------CHHHHHHHHHHHhhcCCCC-----CcccHHHHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccC-CCC
Q 000427 257 ------DVIRLTKTILTSIVADQNV-----DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEV-GAP 323 (1521)
Q Consensus 257 ------~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~ 323 (1521)
..++...++++.++..... .-..-.+..-+|.+.|.-++=++.+|..-+. +++-..++...... ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 1122333334444332110 1122233445677888888889999998543 12222222222221 235
Q ss_pred CcEEEEEcccHHHHHhhC
Q 000427 324 GSKIIVTTRNQEVAKIMG 341 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~~~ 341 (1521)
|-..|+.|.....|+.+.
T Consensus 186 GmTMivVTHEM~FAr~Va 203 (240)
T COG1126 186 GMTMIIVTHEMGFAREVA 203 (240)
T ss_pred CCeEEEEechhHHHHHhh
Confidence 667788888877776653
No 335
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.15 E-value=0.15 Score=56.28 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC-----------------
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN----------------- 274 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----------------- 274 (1521)
..-.++.|+|.+|+|||++|.++.... .+ +=..++|++..+. ..++.+++ .+++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 345799999999999999999986532 11 2246788888654 34444443 22221100
Q ss_pred --CCcccHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 000427 275 --VDNLNLNSLQEKLNKQLSG-KKFLLVLDDVW 304 (1521)
Q Consensus 275 --~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 304 (1521)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 45589999974
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.13 E-value=0.12 Score=60.07 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
...++.++|++|+||||+|..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 337
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.12 E-value=0.12 Score=55.12 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhhcCC------CCCcccHH------
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-FDVIRLTKTILTSIVADQ------NVDNLNLN------ 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~------~~~~~~~~------ 281 (1521)
..++|+|.+|+|||+|+.++.+.. .-+.++++.+++. ..+.++.+++...-.... ..+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999998743 2234577888765 345555555543211110 00111111
Q ss_pred ---HHHHHHHHHhCCceEEEEEeCC
Q 000427 282 ---SLQEKLNKQLSGKKFLLVLDDV 303 (1521)
Q Consensus 282 ---~~~~~l~~~l~~~~~LlVlDdv 303 (1521)
...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12333333 689999999999
No 338
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.11 E-value=0.18 Score=53.78 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=42.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccc---eeEEEEeCCCCCHHHHHHHHHHHhhcC---CCCCcccHHHHHHHHHH
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFN---LKAWTCVSDDFDVIRLTKTILTSIVAD---QNVDNLNLNSLQEKLNK 289 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~l~~ 289 (1521)
||+|.|.+|+||||+|+.+...... .... ....+....-....... ..-...... ......+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLR-DRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHH-HHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchh-hHhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999873211 1122 12222222222211111 111111111 11245677777777777
Q ss_pred HhCCceEEE
Q 000427 290 QLSGKKFLL 298 (1521)
Q Consensus 290 ~l~~~~~Ll 298 (1521)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665443
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=94.11 E-value=0.16 Score=60.28 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 340
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.08 E-value=0.2 Score=55.45 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999998875
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.075 Score=55.02 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 342
>PRK07667 uridine kinase; Provisional
Probab=94.06 E-value=0.068 Score=56.75 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 196 KKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 196 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+.+.+.+.... +...+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666664432 3458999999999999999999987
No 343
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.23 Score=51.80 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhc---CCCC-Cc--------ccHH-
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVA---DQNV-DN--------LNLN- 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~---~~~~-~~--------~~~~- 281 (1521)
.+++|+|..|.|||||++.++.... .....+++.-....+.. ..+...+.. .... .. .+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 5899999999999999999987421 22333333211000000 011111110 0000 00 1111
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccCC-CCCcEEEEEcccHHHHHh
Q 000427 282 SLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVG-APGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 282 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 339 (1521)
...-.+.+.+..++=++++|+.-.. +....+.+...+... ..|..||++|.+......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2223456667778889999997443 122233344333321 236778999988776553
No 344
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.98 E-value=0.28 Score=62.49 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=79.7
Q ss_pred ccccchhHHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 000427 188 KVYGREIEKKDVVELL---LRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRL 261 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 261 (1521)
++.|.+..++++.+.+ ..... .+..-.+-|.++|++|+|||++|+.++... ...| +.++.++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 4667666555554433 22110 011123448999999999999999998732 2222 2222221 1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcC----------ccchhh----hcccccC--CCCCc
Q 000427 262 TKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRN----------YDDWDQ----LRRPFEV--GAPGS 325 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs 325 (1521)
. .... ......+...+...-...+.+|++|+++.-. ...+++ +...+.. ...+.
T Consensus 222 ~----~~~~------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 222 V----EMFV------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred H----Hhhh------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 1010 1112233333444444567899999984320 011222 1111111 12345
Q ss_pred EEEEEcccHHHHHh--h---CCCCceeCCCCChhhHHHHHHHhh
Q 000427 326 KIIVTTRNQEVAKI--M---GTVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 326 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
-+|.||...+.... . .....+.+...+.++-.+++..+.
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 56667777654322 1 123567788888888888887765
No 345
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.97 E-value=0.074 Score=59.47 Aligned_cols=96 Identities=25% Similarity=0.317 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCC
Q 000427 196 KKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNV 275 (1521)
Q Consensus 196 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~ 275 (1521)
...+++.+.... +-+.++|+.|+|||++++....... ...| ...-++.+..-+...++ +++++-......
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~ 91 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCC
Confidence 355666665542 5678999999999999999886321 1122 13334555443333332 222211100000
Q ss_pred CcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccch
Q 000427 276 DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDW 311 (1521)
Q Consensus 276 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 311 (1521)
..- .--.+|+.++.+||+--...+.|
T Consensus 92 ~~~----------gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 92 RVY----------GPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EEE----------EEESSSEEEEEEETTT-S---TT
T ss_pred CCC----------CCCCCcEEEEEecccCCCCCCCC
Confidence 000 00146899999999955444444
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.90 E-value=0.2 Score=52.35 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998863
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.89 E-value=0.071 Score=53.21 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=25.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTC 251 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 251 (1521)
..||.|+|.+|.||||||+++... ....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 368999999999999999999983 333333344443
No 348
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=1.9 Score=48.77 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=85.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcc------cc--cccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQ------VL--DHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQE 285 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~------~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 285 (1521)
..+..++|..|+||+++|..+.+..- .. .|=+...++.... .....++..+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---------------------~~i~vd~Ir~ 76 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---------------------KDLSKSEFLS 76 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---------------------CcCCHHHHHH
Confidence 46777999999999999998876320 01 0101122221101 1111222222
Q ss_pred HHHHH----h-CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcc-cHHHHHhh-CCCCceeCCCCChhhHHH
Q 000427 286 KLNKQ----L-SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTR-NQEVAKIM-GTVPAYQLKKLSDNDCLA 358 (1521)
Q Consensus 286 ~l~~~----l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~ 358 (1521)
...+. . .+++=++|+|++..........+...+...+.++.+|++|. ...+.... .....+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22111 1 14677888899865554556667777766666777776554 44444332 334679999999999887
Q ss_pred HHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHHHH
Q 000427 359 VFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQT 396 (1521)
Q Consensus 359 lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 396 (1521)
.+... + .+ ++.+..++...+|.=-|+..
T Consensus 157 ~l~~~--~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 157 KLLSK--N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHc--C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 77543 1 11 23456666666763344444
No 349
>PTZ00035 Rad51 protein; Provisional
Probab=93.87 E-value=0.36 Score=55.85 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhh
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVL----DHFNLKAWTCVSDDFDVIRLTKTILTSIV 270 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 270 (1521)
..-.++.|+|..|+||||++.+++-..+.. +.=..++|++....+++.++ .+++++++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 345899999999999999999887533211 11235679998887777764 44455544
No 350
>PRK05439 pantothenate kinase; Provisional
Probab=93.86 E-value=0.27 Score=55.49 Aligned_cols=81 Identities=16% Similarity=0.093 Sum_probs=43.6
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhhc-CCCCCcccHHHHHHHH
Q 000427 211 DGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--NLKAWTCVSDDFDVIRLTKTILTSIVA-DQNVDNLNLNSLQEKL 287 (1521)
Q Consensus 211 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l 287 (1521)
.+.+-+|+|.|.+|+||||+|+.+..- ..... ..+.-++...-+-....+.+ ..+.. ....+.-+.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 456789999999999999999988762 22111 12333433332222222111 11111 1112455666777777
Q ss_pred HHHhCCce
Q 000427 288 NKQLSGKK 295 (1521)
Q Consensus 288 ~~~l~~~~ 295 (1521)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66655554
No 351
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.85 E-value=0.071 Score=59.98 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=44.7
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..|+|.++.++++++.+.......+.+-+|+.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876554566789999999999999999999876
No 352
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.85 E-value=0.17 Score=60.05 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
++.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998888763
No 353
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.82 E-value=0.044 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 354
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.80 E-value=0.24 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 211 DGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 211 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.++..+|+|.|+.|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999987
No 355
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.78 E-value=0.042 Score=54.05 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 000427 217 IPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~ 237 (1521)
|+|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 356
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.78 E-value=0.14 Score=59.28 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=50.4
Q ss_pred cCccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc---ceeEEEEe-C
Q 000427 186 EAKVYGREIEKKDVVELLLRD--------DLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF---NLKAWTCV-S 253 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 253 (1521)
+..++|.++.++.+..++... .....-..+-|.++|++|+|||++|+.+... ....| +...|... .
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 456899999999888877541 0001112467899999999999999999873 22233 22222221 1
Q ss_pred CCCCHHHHHHHHHHHh
Q 000427 254 DDFDVIRLTKTILTSI 269 (1521)
Q Consensus 254 ~~~~~~~~~~~i~~~~ 269 (1521)
...+.....+++....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2235566666666544
No 357
>PTZ00301 uridine kinase; Provisional
Probab=93.77 E-value=0.073 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
..+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 358
>PRK06547 hypothetical protein; Provisional
Probab=93.75 E-value=0.082 Score=54.52 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
....+|+|.|++|.||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 359
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.73 E-value=0.24 Score=62.06 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=38.1
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
...++|....++++++.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 45789999999988888754321 2345789999999999999999874
No 360
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.17 Score=54.68 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc-----ccc---c---cc---ceeEEEEeCCCC------CH----------------
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDK-----QVL---D---HF---NLKAWTCVSDDF------DV---------------- 258 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~-----~~~---~---~f---~~~~wv~~~~~~------~~---------------- 258 (1521)
.+++|+|+.|.|||||.+.+..-. ++. . .+ ..+.||.-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999997621 010 0 01 235555421111 11
Q ss_pred ------HHHHHHHHHHhhcCC----CCCcccHHHHHH-HHHHHhCCceEEEEEeCCCCc-CccchhhhcccccC-CCCCc
Q 000427 259 ------IRLTKTILTSIVADQ----NVDNLNLNSLQE-KLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEV-GAPGS 325 (1521)
Q Consensus 259 ------~~~~~~i~~~~~~~~----~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs 325 (1521)
.+...+.+++++... .....+-.+.++ .+.+.|..++=|+|||.-... +...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 133344444444321 112223334443 456778889999999985322 11222223333322 12288
Q ss_pred EEEEEcccHHHHH
Q 000427 326 KIIVTTRNQEVAK 338 (1521)
Q Consensus 326 ~iivTtR~~~v~~ 338 (1521)
.||++|-+-....
T Consensus 191 tIl~vtHDL~~v~ 203 (254)
T COG1121 191 TVLMVTHDLGLVM 203 (254)
T ss_pred EEEEEeCCcHHhH
Confidence 8999999865544
No 361
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.65 E-value=0.057 Score=58.41 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999873
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.4 Score=50.16 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccC-CCCCcEEEEEcccHHHHHhhCCCCce
Q 000427 283 LQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEV-GAPGSKIIVTTRNQEVAKIMGTVPAY 346 (1521)
Q Consensus 283 ~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 346 (1521)
....+.+.+--++=+.|||...+- +.+..+.+...+.. ...|+-+++.|..+.++....+..++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344455555556679999998553 12222222222221 23477788889999999887655443
No 363
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.55 E-value=0.28 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 364
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.54 E-value=0.036 Score=52.46 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccce
Q 000427 217 IPIVGMGGLGKTTLAQLVYNDKQVLDHFNL 246 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 246 (1521)
|.|+|.+|+||||+|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57999999999999999998 45556643
No 365
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.15 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|..|.|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 366
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.053 Score=55.87 Aligned_cols=25 Identities=48% Similarity=0.485 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDK 238 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~ 238 (1521)
..+|+|-||-|+||||||+.+++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999843
No 367
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.43 E-value=0.48 Score=53.74 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSI 269 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 269 (1521)
.++.|.|.+|+||||+|.+++.... ..+=..++|++...+ ..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 5888999999999999999876432 121245778887653 455666555543
No 368
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.41 E-value=0.3 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..+|+|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 369
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.40 E-value=0.35 Score=49.17 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=61.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccccee--EEEEeCCCCCHHHHHHHHHHH---hhcCC----CCCccc---HHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLK--AWTCVSDDFDVIRLTKTILTS---IVADQ----NVDNLN---LNS 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~~---~~~~~----~~~~~~---~~~ 282 (1521)
..|-|++..|.||||.|..++-... ...+... -|+.-.........+..+.-. .+... .....+ ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5788888899999999987765321 1222211 133333223333344332000 01100 000011 111
Q ss_pred HHHHHHHHhCCceE-EEEEeCCCC---cCccchhhhcccccCCCCCcEEEEEcccH
Q 000427 283 LQEKLNKQLSGKKF-LLVLDDVWN---RNYDDWDQLRRPFEVGAPGSKIIVTTRNQ 334 (1521)
Q Consensus 283 ~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 334 (1521)
..+..++.+...+| ++|||.+-. -..-+.+++...+...+.+.-||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22333444544444 999999821 12234556666666666778999999984
No 370
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.40 E-value=0.29 Score=54.41 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 000427 195 EKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN 274 (1521)
Q Consensus 195 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 274 (1521)
..+.++..+... ....-++|+|+.|.||||+.+.++... ......+|+.-. .....+...++......-.+
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGK-KVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCE-EeecchhHHHHHHHhccccc
Confidence 344555555432 234678999999999999999999732 122233333210 11000111233322211111
Q ss_pred C------CcccHHHHHHHHHHHhC-CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHHHh
Q 000427 275 V------DNLNLNSLQEKLNKQLS-GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 275 ~------~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 339 (1521)
. +..+.......+...+. ..+=++++|.+... +.+..+...+. .|..||+||.+..+...
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 11110111222333332 46779999998433 44555544432 47789999998766443
No 371
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.35 E-value=0.0066 Score=62.15 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=77.8
Q ss_pred ccccC-ccccCCcccceeeccCCcccccccchhccccccEEecCCccchhhccccccccCCCceecccCCCCcccccCCC
Q 000427 612 IYELP-DSIGDLRYLRYLNLSGTRIITLPESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLNNSYTGSLEEMPLGF 690 (1521)
Q Consensus 612 i~~lp-~~i~~L~~Lr~L~Ls~~~i~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 690 (1521)
+.++| ..|.....-+.||++.|++..+-..+..++.|..||++.| .+..+|.+++.+..++++++..|. ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44565 5677888999999999999999999999999999999986 789999999999999999998887 89999999
Q ss_pred CCCCcccccC
Q 000427 691 GKLTCLQTLC 700 (1521)
Q Consensus 691 ~~L~~L~~L~ 700 (1521)
+++++++.+.
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999998873
No 372
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.34 E-value=0.072 Score=57.45 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
...+|+|+|++|+||||||+.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999986
No 373
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.34 E-value=0.13 Score=59.56 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=35.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.++|+...+.++.+.+..... ...-|.|+|-.|+||+++|+.+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 488999888888887755421 224678999999999999999986
No 374
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.33 E-value=0.28 Score=53.87 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccc--ccccceeEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHHH---
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQV--LDHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQ------NVDNLNLNS--- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~------~~~~~~~~~--- 282 (1521)
..++|.|-.|+|||+|+.++.++..+ +++-+.++++-+++.. ++.++..++.+.=.... ..+......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56799999999999999998875321 1234678888887764 44555555544211110 001111111
Q ss_pred --HHHHHHHHh---CCceEEEEEeCC
Q 000427 283 --LQEKLNKQL---SGKKFLLVLDDV 303 (1521)
Q Consensus 283 --~~~~l~~~l---~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 122334444 368999999999
No 375
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.31 E-value=0.18 Score=65.27 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=71.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
..++|+...+..+.+.+..... ....|.|+|..|+|||++|+.+++.... .. ...+.+++.... ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC-hhHhhhhhc
Confidence 3689999888888776654321 2346889999999999999999874311 11 233445554332 111111111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCC-----------CCCcEEEEEccc
Q 000427 267 TSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVG-----------APGSKIIVTTRN 333 (1521)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 333 (1521)
....+... .. .......+. ....=.|+||+|..-..+...++...+..+ ..+.|||.||..
T Consensus 449 g~~~~~~~--g~-~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFT--GA-SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Cccccccc--cc-ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11110000 00 001111121 122346999999765555555665554321 134588888865
No 376
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.29 E-value=0.35 Score=52.84 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
-.++.|.|..|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3699999999999999987765532 1222 3456666433 445555555
No 377
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.27 E-value=0.25 Score=52.88 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=60.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCc---ccccc--cc--------------e-eEEEEeCCCCCH--HHHHHHHHHHhhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDK---QVLDH--FN--------------L-KAWTCVSDDFDV--IRLTKTILTSIVAD 272 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~--f~--------------~-~~wv~~~~~~~~--~~~~~~i~~~~~~~ 272 (1521)
.+++|+|..|.|||||.+.++... ...+. |+ . +.++ .+.... .....+++....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~~~~l~~~~-- 102 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLA--FQYPPEIPGVKNADFLRYVN-- 102 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEe--ecChhhccCccHHHHHhhcc--
Confidence 689999999999999999988741 01110 00 0 1111 111110 011111111110
Q ss_pred CCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCc-CccchhhhcccccCC-CCCcEEEEEcccHHHHHh
Q 000427 273 QNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVG-APGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 339 (1521)
. .-..-+...-.+.+.+..++=++++|+.-.. +....+.+...+... ..|..||++|.+.+.+..
T Consensus 103 -~-~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 103 -E-GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred -c-cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 0 1111222333455666677789999997432 222333343333321 236678888888776653
No 378
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.27 E-value=0.27 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+|+|.|..|.||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 379
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.26 E-value=0.087 Score=51.45 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVAD 272 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 272 (1521)
+|.|-|++|.||||+|+.++++.-. .. | +.-.++++|+++.+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl----~~---v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL----KL---V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC----ce---e------eccHHHHHHHHHcCCC
Confidence 6899999999999999999984211 11 1 2346788888877654
No 380
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.22 E-value=0.22 Score=57.68 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=33.2
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 189 VYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 189 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+||+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654321 2345789999999999999999863
No 381
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.22 E-value=0.27 Score=54.18 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
.-.++.|.|.+|+|||++|.++.... . ..=..++||+... ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 45899999999999999999876532 1 2335688888765 34455444
No 382
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.16 E-value=0.27 Score=57.57 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNV----DNLNLNSLQEKLNK 289 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~l~~ 289 (1521)
-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++ +.-+++++...+. ...+.+.+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 4799999999999999999998642 222246778876543 3332 2223444432110 1223344444332
Q ss_pred HhCCceEEEEEeCC
Q 000427 290 QLSGKKFLLVLDDV 303 (1521)
Q Consensus 290 ~l~~~~~LlVlDdv 303 (1521)
..+.-+||+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 235567888887
No 383
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.09 E-value=0.39 Score=56.63 Aligned_cols=51 Identities=31% Similarity=0.322 Sum_probs=36.0
Q ss_pred cCccccchhHHHHHHHHHhc------C--CCCCCC----CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 186 EAKVYGREIEKKDVVELLLR------D--DLSNDG----GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~~----~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..+||.++.++.+...+.. . ....+. ....|.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45689999998888665521 0 000001 135789999999999999999986
No 384
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.08 E-value=0.13 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+|+|.|.+|.||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 385
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=1.9 Score=52.97 Aligned_cols=149 Identities=18% Similarity=0.153 Sum_probs=82.4
Q ss_pred ccccchhHHHHHHHHHhcCC----C--CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDD----L--SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRL 261 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~----~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 261 (1521)
++=|-++.+.+|.+-+.-+- . .+-.+..=|.++|++|.|||-+|++|+.... ..|++|..+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP------ 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP------ 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH------
Confidence 45678888888877653210 0 0112245678999999999999999998432 234555433
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCc---------Cccchhh----hccccc---C-CCCC
Q 000427 262 TKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR---------NYDDWDQ----LRRPFE---V-GAPG 324 (1521)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~----l~~~l~---~-~~~g 324 (1521)
+++.-.-+ .+.+-+.+.+.+.=..+++.|.||.+++- +....+. +..-+. . ...+
T Consensus 740 --ELLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 740 --ELLNMYVG------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred --HHHHHHhc------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 12221111 22334455555555678999999998542 1112222 222222 1 2344
Q ss_pred cEEEEEcccHHHHHh--hC---CCCceeCCCCChhhHH
Q 000427 325 SKIIVTTRNQEVAKI--MG---TVPAYQLKKLSDNDCL 357 (1521)
Q Consensus 325 s~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~ 357 (1521)
--||=+|..++...- +. -++.+.+++=+.+++.
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESK 849 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHH
Confidence 556767766665432 22 2345667666666554
No 386
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.99 E-value=0.41 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
...+++++|+.|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999988775
No 387
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.91 E-value=0.22 Score=57.00 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 000427 217 IPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 388
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.91 E-value=0.075 Score=56.76 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCccccccc--------ceeEEEEeCCCC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHF--------NLKAWTCVSDDF 256 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~ 256 (1521)
.++.|+|++|+||||++.+++........| ..++|+....+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488899999999999998887643322222 257788776653
No 389
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.90 E-value=0.25 Score=58.36 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcC-----CCCCcccHHH-----HH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVAD-----QNVDNLNLNS-----LQ 284 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~-----~~ 284 (1521)
..++|+|..|+|||||++.+....+ ....++|..-.+..++.++..+.+...... ...+...... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5789999999999999999886321 222344444334445555544444432111 1101111111 11
Q ss_pred HHHHHHh--CCceEEEEEeCC
Q 000427 285 EKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 285 ~~l~~~l--~~~~~LlVlDdv 303 (1521)
-.+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2223333 478999999999
No 390
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.87 E-value=0.06 Score=31.18 Aligned_cols=16 Identities=50% Similarity=0.806 Sum_probs=5.8
Q ss_pred ccceeeccCCcccccc
Q 000427 624 YLRYLNLSGTRIITLP 639 (1521)
Q Consensus 624 ~Lr~L~Ls~~~i~~lP 639 (1521)
+||+|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 391
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.86 E-value=0.058 Score=50.79 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 000427 217 IPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~ 237 (1521)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998874
No 392
>PHA00729 NTP-binding motif containing protein
Probab=92.83 E-value=0.14 Score=54.56 Aligned_cols=25 Identities=48% Similarity=0.554 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999873
No 393
>PTZ00494 tuzin-like protein; Provisional
Probab=92.83 E-value=2 Score=49.43 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=102.8
Q ss_pred ccCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 185 KEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 185 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
....+|.|++|-..+.+.|...+ ...++++.+.|.-|.||++|.+.....+. -..++|.+....| -++.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLrs 437 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLRS 437 (664)
T ss_pred ccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHHH
Confidence 45678999999999999887663 46789999999999999999998876432 2456788876644 4677
Q ss_pred HHHHhhcCCCCC-cccHHHHHHHHHH---HhCCceEEEEEeCCCCc-CccchhhhcccccCCCCCcEEEEEcccHHHHHh
Q 000427 265 ILTSIVADQNVD-NLNLNSLQEKLNK---QLSGKKFLLVLDDVWNR-NYDDWDQLRRPFEVGAPGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 265 i~~~~~~~~~~~-~~~~~~~~~~l~~---~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 339 (1521)
+.+.++.+.-.. .+-++-+.+..++ ...++.-+||+-==.-. -...+.+.. .+.....-|.|++---.+.+.-.
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchh
Confidence 888887654311 1223333343332 24456556665321000 001122211 23333455677765544443222
Q ss_pred hC---CCCceeCCCCChhhHHHHHHHhh
Q 000427 340 MG---TVPAYQLKKLSDNDCLAVFVQHS 364 (1521)
Q Consensus 340 ~~---~~~~~~l~~L~~~~~~~lf~~~~ 364 (1521)
.. .-.-|.+++++.++|.++..+..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 12458999999999998876643
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.82 E-value=0.65 Score=58.71 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD--VIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQL 291 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1521)
.+||+++|+.|+||||.+..++...........+..++.. .+. ..+-++...+.++.... ...+.+++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 4799999999999999998888643211111234444433 333 33444555555554332 33455666655553 3
Q ss_pred CCceEEEEEeCCC
Q 000427 292 SGKKFLLVLDDVW 304 (1521)
Q Consensus 292 ~~~~~LlVlDdv~ 304 (1521)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 444 377788774
No 395
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.80 E-value=0.51 Score=52.40 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLS 292 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 292 (1521)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ....-++...+.++.+.. ...+.+.+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 3699999999999999999887632 1111234455543221 111222223333332211 22344555554443322
Q ss_pred -CceEEEEEeCCCCc
Q 000427 293 -GKKFLLVLDDVWNR 306 (1521)
Q Consensus 293 -~~~~LlVlDdv~~~ 306 (1521)
.+.=++++|.....
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24468889988543
No 396
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.76 E-value=0.35 Score=56.39 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999853
No 397
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.75 E-value=0.38 Score=49.67 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=62.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC---CCCHHHHHHHHH--HH--hhcCC----CCCccc---
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD---DFDVIRLTKTIL--TS--IVADQ----NVDNLN--- 279 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~--~~~~~----~~~~~~--- 279 (1521)
...|-|+|..|-||||.|..++-... ...+ .+..|.+-. .......++.+- .- .+... .....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~-g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV-GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH-HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 36889999999999999987765321 1112 222222222 223333333310 00 01100 000011
Q ss_pred HHHHHHHHHHHhCCce-EEEEEeCCCC---cCccchhhhcccccCCCCCcEEEEEcccH
Q 000427 280 LNSLQEKLNKQLSGKK-FLLVLDDVWN---RNYDDWDQLRRPFEVGAPGSKIIVTTRNQ 334 (1521)
Q Consensus 280 ~~~~~~~l~~~l~~~~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 334 (1521)
.....+..++.+.+.+ =++|||.+-. -..-+.+++...+.....+.-||+|-|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1112233344454444 4999999822 12244566777776666778999999984
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.72 E-value=0.18 Score=54.18 Aligned_cols=60 Identities=23% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 000427 195 EKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDV 258 (1521)
Q Consensus 195 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 258 (1521)
+..++++.+.... ++..+|+|+|++|+|||||..++....+-+++=-.++=|+=|.+++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4566667665542 35689999999999999999888764332222223344444445543
No 399
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.70 E-value=0.22 Score=50.99 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.+++|+|..|.|||||++.++... ......+++........ ........+....+ -..-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q--lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ--LSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccC--CHHHHHhceEEEee--CCHHHHHHHHHHHHHhcC
Confidence 689999999999999999998742 22334444332111110 00111111111100 111222333455566666
Q ss_pred eEEEEEeCCCCc-CccchhhhcccccCC-CCCcEEEEEcccHHHHHh
Q 000427 295 KFLLVLDDVWNR-NYDDWDQLRRPFEVG-APGSKIIVTTRNQEVAKI 339 (1521)
Q Consensus 295 ~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 339 (1521)
+=++++|+.-.. +......+...+... ..+..++++|.+.+....
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 789999998432 122333343333321 125678888888766554
No 400
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.61 E-value=0.12 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.|+|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999873
No 401
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.61 E-value=0.2 Score=53.46 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCC--Cc----ccHHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNV--DN----LNLNSLQEKL 287 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~----~~~~~~~~~l 287 (1521)
.+++.|.|+.|.||||+.+.++... +..+ ...+|.+.. . ...+...|...+...... .. .+..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~-~-~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY-A-TLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh-c-CccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999886432 1111 111221111 0 112223333333322110 00 0111121111
Q ss_pred HHHhCCceEEEEEeCCCCcC-ccchh----hhcccccCCCCCcEEEEEcccHHHHHhhCC
Q 000427 288 NKQLSGKKFLLVLDDVWNRN-YDDWD----QLRRPFEVGAPGSKIIVTTRNQEVAKIMGT 342 (1521)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~~-~~~~~----~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 342 (1521)
. +..++-|+++|...... ..+.. .+...+.. .|..+|++|.+.+++..+..
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 1 23567899999984421 12211 22222322 37899999999998876553
No 402
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.57 E-value=0.25 Score=61.26 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=72.5
Q ss_pred cCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 000427 186 EAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTI 265 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 265 (1521)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+.+.... .-...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHH--
Confidence 34689999999888888865422 2356789999999999999999874221 112334455554332 1111
Q ss_pred HHHhhcCCCCCcc-cHHHHHHHHHHHhCCceEEEEEeCCCCcCccchhhhcccccCCC-----------CCcEEEEEccc
Q 000427 266 LTSIVADQNVDNL-NLNSLQEKLNKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEVGA-----------PGSKIIVTTRN 333 (1521)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 333 (1521)
..+.+....... ......-.+. . .+ .=-|+||+|..-......++...+..+. ...|||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~-~-a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE-L-AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh-h-cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 122221110000 0000000111 1 12 2247899997655555566665553321 24588888764
No 403
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.56 E-value=0.28 Score=62.00 Aligned_cols=84 Identities=20% Similarity=0.129 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHHH
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN----VDNLNLNSLQEKLN 288 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~ 288 (1521)
.-+++-|+|.+|+||||||.+++.... ..=..++|+.....++.. .+++++.+.. ......++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 458999999999999999988765322 222467899988877743 5566654321 12334455555555
Q ss_pred HHhCC-ceEEEEEeCC
Q 000427 289 KQLSG-KKFLLVLDDV 303 (1521)
Q Consensus 289 ~~l~~-~~~LlVlDdv 303 (1521)
+.++. +--|||+|.+
T Consensus 132 ~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 132 MLIRSGALDIVVIDSV 147 (790)
T ss_pred HHhhcCCCeEEEEcch
Confidence 55543 5668999998
No 404
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.55 E-value=0.19 Score=52.57 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 405
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.54 E-value=0.3 Score=54.50 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD 254 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 254 (1521)
.-.++.|.|.+|+|||++|.+++.... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 457899999999999999999865321 1223677888764
No 406
>PRK03839 putative kinase; Provisional
Probab=92.54 E-value=0.088 Score=55.39 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 407
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.53 E-value=0.34 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|..|.|||||++.++.-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 408
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.52 E-value=1.4 Score=49.29 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=37.4
Q ss_pred CceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEccc-HHHHHhh-CCCCceeCCCC
Q 000427 293 GKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN-QEVAKIM-GTVPAYQLKKL 351 (1521)
Q Consensus 293 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L 351 (1521)
+++=++|+|++..-..+.+..+...+.....++.+|++|.+ ..+.... .-...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45568899999776667788888877766667766666655 4443332 22244556554
No 409
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.51 E-value=0.47 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 410
>PRK04040 adenylate kinase; Provisional
Probab=92.49 E-value=0.096 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 411
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.46 E-value=0.64 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999874
No 412
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.43 E-value=0.19 Score=48.82 Aligned_cols=40 Identities=23% Similarity=0.119 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 194 IEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 194 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
++.+++.+.+...- ..-.+|.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555553321 12358999999999999999999874
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.42 E-value=0.13 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
++++|+|+.|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998874
No 414
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.41 E-value=0.48 Score=56.13 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcCccc-----ccccceeEEEEeCCCCCHHHHHHHHHHHhhc-CC------CCCcccHH
Q 000427 215 SVIPIVGMGGLGKTTLA-QLVYNDKQV-----LDHFNLKAWTCVSDDFDVIRLTKTILTSIVA-DQ------NVDNLNLN 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~-~~------~~~~~~~~ 281 (1521)
..++|.|..|+|||+|| ..+.+...+ .++-+.++++-+++..+...-+.+.+++-+. .. ..+.....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 56899999999999997 556664322 1234567888888876543334444443331 10 00111111
Q ss_pred ---------HHHHHHHHHhCCceEEEEEeCC
Q 000427 282 ---------SLQEKLNKQLSGKKFLLVLDDV 303 (1521)
Q Consensus 282 ---------~~~~~l~~~l~~~~~LlVlDdv 303 (1521)
..++.+++ +++.+|+|+||+
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 12333332 578999999999
No 415
>PRK00625 shikimate kinase; Provisional
Probab=92.41 E-value=0.09 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 416
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.40 E-value=0.67 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++|+|..|.|||||++.++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 417
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=1.2 Score=46.62 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 187 AKVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.++=|-+..++++.+...-+-. .+-+.++-|.++|++|.|||-||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3456777777777766532110 12345677889999999999999999994
No 418
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.37 E-value=0.63 Score=46.92 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
||.|+|.+|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 419
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.37 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+.|.+.|.+|+||||+|+++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4677899999999999999987
No 420
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.34 E-value=0.11 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 421
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.32 E-value=0.26 Score=58.50 Aligned_cols=51 Identities=29% Similarity=0.264 Sum_probs=35.3
Q ss_pred cCccccchhHHHHHHHHHhcC----CC------CCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 186 EAKVYGREIEKKDVVELLLRD----DL------SNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 186 ~~~~vGr~~~~~~l~~~L~~~----~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..+||.+..++.+...+... .. ...-..+.+.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 346899999888776554210 00 0011235688999999999999999986
No 422
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.29 E-value=0.18 Score=54.77 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 000427 196 KKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLT 262 (1521)
Q Consensus 196 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 262 (1521)
-.+++..+... .++..+|+|+|.||+|||||.-.+....+.+++=-.++=|+-|.+++--.++
T Consensus 37 a~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 34555555443 3467899999999999999998887755444444455566666666654443
No 423
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.25 E-value=0.19 Score=56.95 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
.+++.+.|.|||||||+|.+.+-. .......+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 479999999999999999886542 2223344666766666666555443
No 424
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.25 E-value=0.53 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+..+|.|+|.+|.|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999873
No 425
>PRK04328 hypothetical protein; Provisional
Probab=92.24 E-value=0.31 Score=54.07 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=30.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD 255 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 255 (1521)
.-.++.|.|.+|+|||++|.++.... . ..-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 45799999999999999999977632 1 22356788887664
No 426
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.24 E-value=0.2 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+.|.|+|.+|.||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999873
No 427
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=1 Score=55.02 Aligned_cols=182 Identities=17% Similarity=0.195 Sum_probs=92.1
Q ss_pred cCccccchhHH---HHHHHHHhcCCC---CCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 000427 186 EAKVYGREIEK---KDVVELLLRDDL---SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVI 259 (1521)
Q Consensus 186 ~~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 259 (1521)
-.++-|.|+.+ .++++.|.++.. -+..-++=|..+|++|.|||.||++++....+ .|- +.|..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PFf-----~iSGS---- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PFF-----SISGS---- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cce-----eccch----
Confidence 34567887655 455666654421 01234567899999999999999999986543 221 11111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceEEEEEeCCCCc----------Cccchhhhcc----cccCCC--C
Q 000427 260 RLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR----------NYDDWDQLRR----PFEVGA--P 323 (1521)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~~l~~----~l~~~~--~ 323 (1521)
+.++-+- ........+...+..++-++.|++|.+... ..+.|++-.. -....+ .
T Consensus 218 ----~FVemfV------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 ----DFVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred ----hhhhhhc------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 0011110 011122334444555566899999987331 1233444222 222222 3
Q ss_pred CcEEEEEcccHHHHHh--hC---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHH
Q 000427 324 GSKIIVTTRNQEVAKI--MG---TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLA 393 (1521)
Q Consensus 324 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 393 (1521)
|-.|+-.|-.++|... .. -.+.+.++.-+...-.+.++-|+-... ..+.-.+.. |++.+-|.-.|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~-l~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP-LAEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC-CCCcCCHHH----HhhhCCCcccc
Confidence 4455555655655432 12 234455555555666666665552211 111122222 77777765544
No 428
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=92.21 E-value=0.13 Score=48.50 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCceE
Q 000427 217 IPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGKKF 296 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 296 (1521)
..|.|-+|+|||+|+..+..| .+.+.|-. +.+-++-++.+--. -.+...... +....+........+.++...
T Consensus 11 llIigDsgVGKssLl~rF~dd-tFs~sYit----TiGvDfkirTv~i~-G~~VkLqIw-DtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADD-TFSGSYIT----TIGVDFKIRTVDIN-GDRVKLQIW-DTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHeecCCcccHHHHHHHHhhc-ccccceEE----EeeeeEEEEEeecC-CcEEEEEEe-ecccHHHHHHHHHHHccCCce
Confidence 358899999999999999886 33333322 22211111100000 000000111 223334444455566678888
Q ss_pred EEEEeCCCCc
Q 000427 297 LLVLDDVWNR 306 (1521)
Q Consensus 297 LlVlDdv~~~ 306 (1521)
++|+=||-+.
T Consensus 84 v~vVYDVTn~ 93 (198)
T KOG0079|consen 84 VIVVYDVTNG 93 (198)
T ss_pred EEEEEECcch
Confidence 8888888543
No 429
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.18 E-value=0.37 Score=56.63 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHHH-----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD-VIRLTKTILTSIVADQ------NVDNLNLNS----- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~------~~~~~~~~~----- 282 (1521)
..++|+|..|+|||||++.++... ..+.++.+-+++... +.++..+++..-+... ..+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998632 224566666666543 3445555443311110 001111111
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 000427 283 LQEKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l--~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 112233333 589999999999
No 430
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.17 E-value=0.89 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|..|.|||||++.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 431
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.16 E-value=0.97 Score=48.74 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++|+|..|.|||||++.++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 432
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.14 E-value=0.23 Score=47.12 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 188 KVYGREIEKKDVVELLLRDDL-SNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.++|-+-..+.+++.+...-. ....++-|++.+|+.|+|||-+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 345555444444444432111 14567789999999999999988887764
No 433
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.10 E-value=0.26 Score=57.46 Aligned_cols=64 Identities=23% Similarity=0.121 Sum_probs=47.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKT 264 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 264 (1521)
.++|++..+..+...+... +-+.+.|.+|+|||+||+.++.. .. -..++|.+.......++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCc
Confidence 3788888888887777665 45789999999999999999972 22 23456777776666655443
No 434
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.10 E-value=0.34 Score=57.79 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQ------NVDNLNLN-----S 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~------~~~~~~~~-----~ 282 (1521)
..++|+|.+|+|||||+.++++... +.+-+.++++-+++.. .+.++..++...-.... ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 5789999999999999988887432 2245677777776654 34555555543211110 00111111 1
Q ss_pred HHHHHHHHh---CCceEEEEEeCC
Q 000427 283 LQEKLNKQL---SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l---~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 222344444 378999999999
No 435
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.10 E-value=0.61 Score=49.60 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 211 DGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 211 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..++.+|.++||+|.||||..+.++..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 345678889999999999999998864
No 436
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=3.5 Score=43.51 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 188 KVYGREIEKKDVVELLLRDDLS-------NDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
++=|-++.++++++.+.-+-.. +-..++-+..+|++|.|||-+|++.+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 5668899999999887433210 123456788999999999999999886
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.07 E-value=0.81 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+|++++|+.|+||||++..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999998863
No 438
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.04 E-value=0.15 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
...+++|+|..|.|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999864
No 439
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.14 Score=50.23 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
No 440
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.01 E-value=0.75 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|.|..|.|||||.+.++.-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999873
No 441
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.01 E-value=0.26 Score=48.22 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCV 252 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 252 (1521)
--+.|+|-||+||+++.+.+|.- -+.+.|...+||+.
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 34679999999999999999974 23456677888864
No 442
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.98 E-value=0.51 Score=56.11 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHHH-----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDF-DVIRLTKTILTSIVADQ------NVDNLNLNS----- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~------~~~~~~~~~----- 282 (1521)
..++|.|..|+|||||+.+++..... ++=+.++++-+++.. .+.++..++...=.... ..+......
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999988653221 111356677776654 44555555554211110 001111111
Q ss_pred HHHHHHHHh---CCceEEEEEeCC
Q 000427 283 LQEKLNKQL---SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l---~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 222344554 678999999999
No 443
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.94 E-value=0.12 Score=51.33 Aligned_cols=20 Identities=45% Similarity=0.758 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 000427 216 VIPIVGMGGLGKTTLAQLVY 235 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~ 235 (1521)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 444
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.93 E-value=1.4 Score=43.71 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHhhcCCCC-----CcccHHHHHHHHHHHhCCceEEEEEeCCCCc-Cccchhhhccccc--CCCCCcEE
Q 000427 256 FDVIRLTKTILTSIVADQNV-----DNLNLNSLQEKLNKQLSGKKFLLVLDDVWNR-NYDDWDQLRRPFE--VGAPGSKI 327 (1521)
Q Consensus 256 ~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~--~~~~gs~i 327 (1521)
.+.....++.+.+++..... +-..-++..-.+.+.+...+-+++-|.---. +.+.-+++...+- ....|...
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~Tl 200 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceE
Confidence 34556677777777654321 2234455566778888888888888865221 1122233332221 24578999
Q ss_pred EEEcccHHHHHhhCC
Q 000427 328 IVTTRNQEVAKIMGT 342 (1521)
Q Consensus 328 ivTtR~~~v~~~~~~ 342 (1521)
|+.|.++.+|..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999987753
No 445
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.85 E-value=0.14 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 446
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.53 Score=53.60 Aligned_cols=82 Identities=24% Similarity=0.238 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNV----DNLNLNSLQEKLNK 289 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~l~~ 289 (1521)
-.+|.|-|-+|||||||..+++.+ ..+.- .+.+|+-.+...-.+ --+++++..... ...+.++..+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 478999999999999999999884 33333 677776655433222 224455432221 12344444444433
Q ss_pred HhCCceEEEEEeCCC
Q 000427 290 QLSGKKFLLVLDDVW 304 (1521)
Q Consensus 290 ~l~~~~~LlVlDdv~ 304 (1521)
.++-++|+|-+.
T Consensus 167 ---~~p~lvVIDSIQ 178 (456)
T COG1066 167 ---EKPDLVVIDSIQ 178 (456)
T ss_pred ---cCCCEEEEeccc
Confidence 578899999983
No 447
>PRK15453 phosphoribulokinase; Provisional
Probab=91.83 E-value=0.65 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..+|+|.|.+|.||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999885
No 448
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.82 E-value=0.23 Score=51.96 Aligned_cols=42 Identities=31% Similarity=0.404 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDV 258 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 258 (1521)
.|+|+|-||+||||+|..++....-++-|+ +.-|++..++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988554221122143 344666555554
No 449
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=91.78 E-value=0.53 Score=50.45 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHhCCceEEEEEeCCCCc-Cccchh-hhcccccCCC-C-CcEEEEEcccHHHHHhhCCCCceeC
Q 000427 286 KLNKQLSGKKFLLVLDDVWNR-NYDDWD-QLRRPFEVGA-P-GSKIIVTTRNQEVAKIMGTVPAYQL 348 (1521)
Q Consensus 286 ~l~~~l~~~~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~~~~~~~~~l 348 (1521)
.+.+.+..++-++++|+.-.. +....+ .+...+.... . |..||++|.+.+.... ...++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 355666778889999998543 122233 4444443322 2 5678888888776653 3344444
No 450
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.75 E-value=0.72 Score=52.81 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=32.5
Q ss_pred ceeCCCCChhhHHHHHHHhhhCCCCCCCChhHHHHHHHHHHhcCCChHHH
Q 000427 345 AYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAA 394 (1521)
Q Consensus 345 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 394 (1521)
++++++++.+|+..++..+.-..- ......-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~-l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGW-LRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCc-cccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763221 1111223445666777779998654
No 451
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.69 E-value=0.68 Score=50.91 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD 255 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 255 (1521)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 347999999999999999998765321 22346788887544
No 452
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.69 E-value=0.26 Score=61.69 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=54.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+|+..+|..- ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46889988888887766432 368899999999999999998742 2334577788665 3346677777777
Q ss_pred HHhhc
Q 000427 267 TSIVA 271 (1521)
Q Consensus 267 ~~~~~ 271 (1521)
.+.+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 453
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.66 E-value=0.37 Score=59.82 Aligned_cols=45 Identities=22% Similarity=0.143 Sum_probs=33.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.++|....+.++++.+..... .-..|.|+|-.|+||+++|+.+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 588988888777776643211 123478999999999999999865
No 454
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.65 E-value=0.71 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 455
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.64 E-value=0.11 Score=66.94 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=83.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCC------CCcccHHHHHHHH
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQN------VDNLNLNSLQEKL 287 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~l 287 (1521)
.+++.|+|+.|.||||+.+.+.... . ......+|.+...... ..+.++...++.... .-......+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999886531 0 0011112222211000 001111111111000 0001111222222
Q ss_pred HHHhCCceEEEEEeCCCCc-Cccchhhhcc-cccC-CCCCcEEEEEcccHHHHHhhCCCCceeCCCCChh-hHHHHHHHh
Q 000427 288 NKQLSGKKFLLVLDDVWNR-NYDDWDQLRR-PFEV-GAPGSKIIVTTRNQEVAKIMGTVPAYQLKKLSDN-DCLAVFVQH 363 (1521)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~-~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~ 363 (1521)
. .+ ..+-|+++|..... +..+...+.. .+.. ...|+.+|+||...++.........+.-..+..+ +... |..+
T Consensus 398 ~-~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Yk 474 (771)
T TIGR01069 398 S-KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYK 474 (771)
T ss_pred H-hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEE
Confidence 2 22 47899999998543 2222333321 1111 1357899999999887554322111111111111 1111 1011
Q ss_pred hhCCCCCCCChhHHHHHHHHHHhcCCChHHHHHHHhhhCCCCChhHHHHHHh
Q 000427 364 SLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVLS 415 (1521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 415 (1521)
. ..+. +. ..-|-+|++++ |+|-.|.--|..+... ....+..++.
T Consensus 475 l-~~G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 475 L-LKGI--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred E-CCCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1 1111 11 23466777777 7888887777776543 2334444443
No 456
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.62 E-value=0.18 Score=56.55 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=35.2
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD 255 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 255 (1521)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4568999999999999999999988 44455788999998765
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.59 E-value=0.11 Score=55.56 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 458
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.58 E-value=0.38 Score=56.93 Aligned_cols=88 Identities=15% Similarity=0.217 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHHH-----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD-VIRLTKTILTSIVADQ------NVDNLNLNS----- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~------~~~~~~~~~----- 282 (1521)
..++|.|.+|+|||+|+.++..... +.+-+.++++-+++... +.++.+++...=.... ..+......
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999877532 22346788888876653 4555555443211110 001111111
Q ss_pred HHHHHHHHh---CCceEEEEEeCC
Q 000427 283 LQEKLNKQL---SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l---~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecCh
Confidence 223344554 468999999999
No 459
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.58 E-value=0.2 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..+.|.|++|+|||||+++++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 68899999999999999999984
No 460
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.53 E-value=0.14 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 461
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.52 E-value=0.88 Score=51.56 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHH
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDF-DVIRLTKTI 265 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 265 (1521)
..++|.|..|+|||+|++++++.. +-+.++++-+++.. .+.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 578999999999999999999843 33567888887654 344555543
No 462
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.46 E-value=1.1 Score=61.25 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcCc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYNDK 238 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 238 (1521)
.++-|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999864
No 463
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.41 E-value=0.14 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999973
No 464
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.36 E-value=0.2 Score=52.82 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVS 253 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 253 (1521)
.++|.|+|+.|+|||||++.+.. .....|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 37899999999999999999998 445567555555443
No 465
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.34 E-value=0.51 Score=55.77 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHHH----
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFD-VIRLTKTILTSIVADQ------NVDNLNLNS---- 282 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~------~~~~~~~~~---- 282 (1521)
-..++|+|..|+|||||++++++... -+.++++-+++... +.+...+.+..-+... ..+......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987432 24455566665543 3344444443321110 001111111
Q ss_pred -HHHHHHHHh--CCceEEEEEeCC
Q 000427 283 -LQEKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 283 -~~~~l~~~l--~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 112233333 578999999999
No 466
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.27 E-value=0.13 Score=54.39 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 467
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.26 E-value=0.67 Score=47.73 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 000427 217 IPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 217 i~I~G~gGiGKTtLa~~v~~~ 237 (1521)
|.|+|+.|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999873
No 468
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.25 E-value=0.61 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 469
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.22 E-value=0.13 Score=29.72 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=11.6
Q ss_pred CceeEEEEcCccccccC
Q 000427 600 QRLRVFSLRGYHIYELP 616 (1521)
Q Consensus 600 ~~Lr~L~L~~~~i~~lp 616 (1521)
++|++|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999887
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.21 E-value=0.3 Score=57.06 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
..|.|.|+.|.||||+++.+... +.......+|. +.++... ..... ..+....+ ...+.....+.++..++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 68999999999999999998763 33333444443 3332111 10000 00000111 1111233556677788888
Q ss_pred eEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccHHHH
Q 000427 295 KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQEVA 337 (1521)
Q Consensus 295 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 337 (1521)
+=.|++|.+.+. +.+..... ....|..|+.|.-...+.
T Consensus 196 pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCCHH
Confidence 889999999543 44433222 223465566666554443
No 471
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.21 E-value=0.85 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+.+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 472
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.21 E-value=0.62 Score=55.08 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhhcCC------CCCcccHHH-----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD-DFDVIRLTKTILTSIVADQ------NVDNLNLNS----- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~------~~~~~~~~~----- 282 (1521)
..++|+|..|+|||||++.++...+ . +..+.+.+.. ...+.++..+.+..-+... ..+......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999987432 1 2222233333 3344555554443321111 001111111
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 000427 283 LQEKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l--~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233443 578999999999
No 473
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=1.4 Score=46.47 Aligned_cols=55 Identities=24% Similarity=0.135 Sum_probs=37.1
Q ss_pred ccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 000427 188 KVYGREIEKKDVVELLLRDDL-------SNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHF 244 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 244 (1521)
++=|=.++++++.+...-+-. -+-+.++-|..+|++|.|||-+|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 444666777777765532211 0223456788999999999999999999 444444
No 474
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.21 E-value=0.91 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999763
No 475
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.19 E-value=0.91 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999874
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.18 E-value=0.23 Score=49.17 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSD 254 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 254 (1521)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999853 224455555666554
No 477
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.17 E-value=0.4 Score=60.23 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=48.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 266 (1521)
.+++|.++.++.+...+... +-+.++|++|+||||+|+.+.+... ...|...+++.- ...+...+++.++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n-~~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPN-PEDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeC-CCCCchHHHHHHH
Confidence 56889998888777777432 2455999999999999999997321 123333333322 2224455566666
Q ss_pred HHhhc
Q 000427 267 TSIVA 271 (1521)
Q Consensus 267 ~~~~~ 271 (1521)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 66543
No 478
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.11 E-value=0.46 Score=55.35 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=56.4
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHhcCccc----ccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 000427 212 GGFSVIPIVGMGGLGKTTLAQLVYNDKQV----LDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKL 287 (1521)
Q Consensus 212 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 287 (1521)
..++=+.|||..|.|||-|.-.+|+...+ +-||. ....++-+.+..... ....... +
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l~~----v 120 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPLPQ----V 120 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccHHH----H
Confidence 34678999999999999999999985433 22332 223333333322111 2223333 3
Q ss_pred HHHhCCceEEEEEeCCCCcCccchhhhcccccC-CCCCcEEEEEccc
Q 000427 288 NKQLSGKKFLLVLDDVWNRNYDDWDQLRRPFEV-GAPGSKIIVTTRN 333 (1521)
Q Consensus 288 ~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~ 333 (1521)
.+.+.++..||.||.+.-.+..+-.-+...|.. ...|. |||+|-+
T Consensus 121 a~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN 166 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSN 166 (362)
T ss_pred HHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCC
Confidence 344556677999999754444443333333332 23565 4555544
No 479
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.11 E-value=1.1 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.+++|+|..|.|||||++.++..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.00 E-value=0.17 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999997
No 481
>PRK08149 ATP synthase SpaL; Validated
Probab=90.96 E-value=0.71 Score=54.56 Aligned_cols=85 Identities=15% Similarity=0.302 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-FDVIRLTKTILTSIVADQ------NVDNLNLN-----S 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~------~~~~~~~~-----~ 282 (1521)
..++|+|..|+|||||+..++... .-+.++...+... .++.++..+......... ..+..... .
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 578999999999999999998732 2233333444433 345555555555322110 00111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 000427 283 LQEKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l--~~~~~LlVlDdv 303 (1521)
....+.+++ ++|.+|+++||+
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccch
Confidence 122233333 589999999999
No 482
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.96 E-value=0.16 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcC
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 483
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.96 E-value=0.2 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..+|+|+|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 484
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.91 E-value=0.59 Score=50.94 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhhc--C--C-CCCcccHHHHHHHHH
Q 000427 216 VIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD--FDVIRLTKTILTSIVA--D--Q-NVDNLNLNSLQEKLN 288 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~--~--~-~~~~~~~~~~~~~l~ 288 (1521)
+|+|.|..|.||||+|+.+.... +..=..++.++...- .+-...-..+...... . . ..++-+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999888632 111012233332221 1222222222222111 1 1 125667777777777
Q ss_pred HHhCCc
Q 000427 289 KQLSGK 294 (1521)
Q Consensus 289 ~~l~~~ 294 (1521)
...+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 776654
No 485
>PRK13947 shikimate kinase; Provisional
Probab=90.91 E-value=0.16 Score=52.96 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000427 216 VIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 486
>COG4639 Predicted kinase [General function prediction only]
Probab=90.91 E-value=0.23 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
...|+++|..|.||+|.|+.-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 36889999999999999998554
No 487
>PRK05922 type III secretion system ATPase; Validated
Probab=90.91 E-value=0.53 Score=55.61 Aligned_cols=85 Identities=12% Similarity=0.238 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhhcCCC------CCcccHHH-----
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDD-FDVIRLTKTILTSIVADQN------VDNLNLNS----- 282 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~------~~~~~~~~----- 282 (1521)
..++|+|..|+|||||.+.+.... .-+..+.+.++.. ......+.+.......... .+......
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999998742 2233344444433 2333444443332221110 01111111
Q ss_pred HHHHHHHHh--CCceEEEEEeCC
Q 000427 283 LQEKLNKQL--SGKKFLLVLDDV 303 (1521)
Q Consensus 283 ~~~~l~~~l--~~~~~LlVlDdv 303 (1521)
..-.+.+++ +++.+|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233443 478999999999
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.91 E-value=0.74 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
+..+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998874
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.90 E-value=0.18 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 490
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.83 E-value=0.23 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 213 GFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 213 ~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
+..||.++|.+|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 491
>PRK06217 hypothetical protein; Validated
Probab=90.81 E-value=0.16 Score=53.41 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 492
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.81 E-value=0.48 Score=52.89 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=44.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCc
Q 000427 215 SVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQNVDNLNLNSLQEKLNKQLSGK 294 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 294 (1521)
.+|.|.|..|.||||+++.+... +.. ....+ +.+.++.... ... ..++.... .......+.++..++..
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~-~~q~~v~~----~~~~~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPG-INQVQVNE----KAGLTFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCC-ceEEEeCC----cCCcCHHHHHHHHhccC
Confidence 58999999999999999988652 211 11111 2333222110 000 01111111 11113456667777778
Q ss_pred eEEEEEeCCCCc
Q 000427 295 KFLLVLDDVWNR 306 (1521)
Q Consensus 295 ~~LlVlDdv~~~ 306 (1521)
+=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 889999999554
No 493
>PRK13949 shikimate kinase; Provisional
Probab=90.78 E-value=0.18 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000427 216 VIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 216 vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
.|.|+|+.|.||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 494
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=90.75 E-value=0.95 Score=53.61 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhhcCC------CCCcccHH-----H
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNLKAWTCVSDDFDVIRLTKTILTSIVADQ------NVDNLNLN-----S 282 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~-----~ 282 (1521)
-..++|+|..|+|||||++.++..... ...++...-.+...+.+.++..+..-+... ..+..... .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999874321 112332222233566666665554422111 00111111 1
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCCcCccchhhhcccccCC-CCCcEEEEEcccHHHHHhh
Q 000427 283 LQEKLNKQL--SGKKFLLVLDDVWNRNYDDWDQLRRPFEVG-APGSKIIVTTRNQEVAKIM 340 (1521)
Q Consensus 283 ~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 340 (1521)
.+..+.+++ +++.+||++||+-.- .+...++...+..- ..|--..+.|....+....
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~-a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRF-ADARRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHH-HHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 122222333 478999999999321 12223332222110 1255555655555555544
No 495
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.74 E-value=0.34 Score=48.66 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 194 IEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 194 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..++++.+++.. +++.++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 457778888832 68999999999999999999885
No 496
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.68 E-value=0.23 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 000427 215 SVIPIVGMGGLGKTTLAQLVY 235 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa~~v~ 235 (1521)
..++|+|+.|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999986
No 497
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.66 E-value=0.39 Score=50.23 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=30.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEcCCCCcHHHHHHHHhc
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN 236 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 236 (1521)
.+++|-+..+..+.-..... .-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 35788888777776665432 5688999999999999999864
No 498
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.64 E-value=0.21 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcC
Q 000427 214 FSVIPIVGMGGLGKTTLAQLVYND 237 (1521)
Q Consensus 214 ~~vi~I~G~gGiGKTtLa~~v~~~ 237 (1521)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999874
No 499
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.64 E-value=0.52 Score=51.81 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCcHHHHH-HHHhcCccccccccee-EEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHH----
Q 000427 215 SVIPIVGMGGLGKTTLA-QLVYNDKQVLDHFNLK-AWTCVSDDF-DVIRLTKTILTSIVADQ------NVDNLNLN---- 281 (1521)
Q Consensus 215 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~------~~~~~~~~---- 281 (1521)
..++|+|..|+|||+|| ..+.+.. +-+.+ +++-+++.. .+.++.+++.+.-.... ..+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 5565521 22333 566666654 34555555543211110 00111111
Q ss_pred -----HHHHHHHHHhCCceEEEEEeCC
Q 000427 282 -----SLQEKLNKQLSGKKFLLVLDDV 303 (1521)
Q Consensus 282 -----~~~~~l~~~l~~~~~LlVlDdv 303 (1521)
..++.++. +++.+|+|+||+
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 12333333 578999999999
No 500
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=6.1 Score=44.43 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCCCcCccchhhhcccccCCCCCcEEEEEcccH-HHHHhhC-CCCceeCCCCChhhHHHHHH
Q 000427 292 SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQ-EVAKIMG-TVPAYQLKKLSDNDCLAVFV 361 (1521)
Q Consensus 292 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~ 361 (1521)
.+++-++|+||+.......+..+...+-..+.++.+|++|.+. .+..... -...+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3556689999997766677888888777666667777766553 4443332 234577766 5665555554
Done!