Query 000427
Match_columns 1521
No_of_seqs 569 out of 6013
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 16:34:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000427.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_206-210//hhsearch_pdb/000427hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 474.0 27.5 290 1207-1514 442-766 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 425.7 31.0 90 592-681 69-162 (768)
3 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 409.1 22.3 320 187-529 128-473 (549)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 371.7 25.6 313 183-527 120-452 (1249)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 368.2 33.5 98 600-699 25-126 (680)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 352.8 34.4 100 598-699 47-150 (680)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 339.1 34.2 176 1207-1383 376-558 (606)
8 1vt4_I APAF-1 related killer D 1.0 1 1 338.6 20.1 286 188-520 129-436 (1221)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 334.4 32.1 98 601-699 34-134 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 333.8 27.1 266 1042-1382 285-555 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=473.98 Aligned_cols=290 Identities=18% Similarity=0.168 Sum_probs=172.6
Q ss_pred CCCCEEEECCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEE
Q ss_conf 97547985147870013432179998658986258998534787777422103443046881005543058998653763
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPSGLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIYI 1286 (1521)
Q Consensus 1207 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1286 (1521)
++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..++.+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 98898989788154718978828777329990199513758878816998998975399518968768856899998989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC----------------------CCCCCC
Q ss_conf 1455633356447898876545303577864479998886663336402244----------------------614444
Q 000427 1287 SECENLKILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCK----------------------RLEALP 1344 (1521)
Q Consensus 1287 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~----------------------~~~~~~ 1344 (1521)
++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.....+..+++..+. +.+..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78943374887770889899898988846882795786042122320134542111134443222233222100135563
Q ss_pred CCCCCCCCCCEEEE-----CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 43678876333784-----5787885468987653156512664211345530666665576436886165587744741
Q 000427 1345 KGLHNLTSVQELRI-----GGELPSLEEDGLPTKIQSLHIRGNMEIWKSMVERGRGFHRFSSMRHLEIGGCYDDMVSFPL 1419 (1521)
Q Consensus 1345 ~~l~~l~~L~~L~l-----~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~l~~l~~l~l~~~~~~l~~l~l 1419 (1521)
..+..++.+..+++ +|.+|. .+..+++|++||+++| ++++..+-.++++ +.++.|++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~--~~~~l~~L~~LdLs~N---------------~l~g~ip~~l~~l-~~L~~L~L 663 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSP--TFDNNGSMMFLDMSYN---------------MLSGYIPKEIGSM-PYLFILNL 663 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCC--SCSSSBCCCEEECCSS---------------CCBSCCCGGGGGC-TTCCEEEC
T ss_pred HHHHCCCCCCCCCCCCCEECCCCCH--HHHCCCCCCEEECCCC---------------CCCCCCCHHHHCC-CCCCEEEC
T ss_conf 2320023211001133100462743--3403356657978588---------------0155587788414-15787848
Q ss_pred CCCCCCCCCC-CCCCCCCEECCCCCCCC---CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEECCCCHHHH--
Q ss_conf 0012488788-87633510103344666---44224778775473302467787889999987754614304892579--
Q 000427 1420 EDKRLGTALP-LPASLTSLSILLFSNLE---RLPSSIVDLQNLTELRLHGCPKLKYFPEKGLPSSLLQLQIWRCPLIE-- 1493 (1521)
Q Consensus 1420 ~~n~l~~~~~-~~~~l~~L~~l~l~~l~---~lp~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~sL~~L~i~~c~~l~-- 1493 (1521)
++|.+++.++ .+..+++|+.+++++.. .+|..+.+++.|++|++++|+..+.+|..+...++....+.+||.+.
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCC
T ss_conf 68803887896784777899898978802386886775788789787968815560899601024897775698321088
Q ss_pred --HHHHCCCCCCCCCCCCCCEEE
Q ss_conf --987103998655324867289
Q 000427 1494 --EKCRKDGGQYWDLLTHIPYVK 1514 (1521)
Q Consensus 1494 --~~~~~~~~~~~~~i~~i~~~~ 1514 (1521)
..|....+++|++|+|++-++
T Consensus 744 ~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 744 PLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp TSCCCCSCC--------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77678887668889888765667
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=425.69 Aligned_cols=90 Identities=19% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCC--CHHCCCCCCEEECCCCCCHHHCCCCC-C
Q ss_conf 111111458304999747654334823238763326642587443-2461--10024656487327864031210011-2
Q 000427 592 ILPKLFKLQRLRVFSLRGYHIYELPDSIGDLRYLRYLNLSGTRII-TLPE--SVNTLYNLHTLLLEGCLRLKKLCADM-G 667 (1521)
Q Consensus 592 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 667 (1521)
+++.+..++.|++++++.+.+..+|..|+.+.+|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 69657316802246786888678703324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCCEECCCCCC
Q ss_conf 64787500146888
Q 000427 668 NLIKLHYLNNSYTG 681 (1521)
Q Consensus 668 ~L~~L~~L~l~~~~ 681 (1521)
++++|++|++++|.
T Consensus 149 ~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 149 KLNSLEVLDLSANS 162 (768)
T ss_dssp CCTTCSEEECCSSC
T ss_pred CCCCCCEEECCCCC
T ss_conf 38899989897983
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=409.12 Aligned_cols=320 Identities=18% Similarity=0.237 Sum_probs=260.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCEEEEEEECCCC--CHHHHH
Q ss_conf 73234135799999998328889999928999994899849999999955--70100356604999918977--889999
Q 000427 187 AKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYN--DKQVLDHFNLKAWTCVSDDF--DVIRLT 262 (1521)
Q Consensus 187 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~ 262 (1521)
+..|||++++++|.++|... .++..++|+|+||||+||||||+++|+ +.++..+|+.++||++++.. ++..++
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 76078417999999987251---578962899986999988999999998406987466995799997898787999999
Q ss_pred HHHHHHHHCCCC------CCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCHH
Q ss_conf 999998102888------78546889999999881794-39999818788580254463033567999809999805578
Q 000427 263 KTILTSIVADQN------VDNLNLNSLQEKLNKQLSGK-KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRNQE 335 (1521)
Q Consensus 263 ~~i~~~l~~~~~------~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~s~iiiTtr~~~ 335 (1521)
..|+.+++.... .+..+.+.+...+++.++++ ||||||||||+.....|.. .+||+||||||+..
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEECCCHH
T ss_conf 9999998537553455553314699999999999768984899997999714415432--------69988999749779
Q ss_pred HHHHHC-CCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 897508-8782507999945399999995609999999712799999999851997379999985407999945899988
Q 000427 336 VAKIMG-TVPAYQLKKLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWEDVL 414 (1521)
Q Consensus 336 ~~~~~~-~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l 414 (1521)
++..++ ...+++|++|+.++||+||.+++|+.. .++.+.+++++|+++|+|+||||+++|+.++.+ . ..|...+
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l 351 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQL 351 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHH
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHH
T ss_conf 9997088973898999898999999998744899---855689999999999599839999999984434-4-8999875
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCC
Q ss_conf 1035468643358115999967307945687985-----------75255899523968999999971--9765799999
Q 000427 415 SSKIWELPEERCGIIPALAVSYYYLSAPLKQCFA-----------YCSLFPKDYEFEEEEIILLWCAS--GFLDHKGSGN 481 (1521)
Q Consensus 415 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~~~-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~ 481 (1521)
....+.. ....+..++.+||+.||.++|.||+ |||+||+++.|+ +.+|+|+ ||+.......
T Consensus 352 ~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 352 NNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHHHHCC--CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCC
T ss_conf 7876136--477789897516202267999997526522336743235608997666----5331101355002677899
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCC-CCCCEEEEHHHHHHHHHHHCCCEE
Q ss_conf 865789999999995878531489-989478805589999995124448
Q 000427 482 SCDDFGRKIFKELHSRSFFQQSSN-DASRFVMHDLISDLAQWAAGEIYF 529 (1521)
Q Consensus 482 ~~~~~~~~~~~~L~~~~li~~~~~-~~~~~~mHdlv~~~~~~~~~~~~~ 529 (1521)
..+++++ ++++|+++||++.... ...+|+|||+||++|+.++.+++.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999999-99999875883671479804999676999999999889899
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=371.74 Aligned_cols=313 Identities=20% Similarity=0.313 Sum_probs=245.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC-CCCC-CEEEEEEECCCCC--H
Q ss_conf 6546732341357999999983288899999289999948998499999999557010-0356-6049999189778--8
Q 000427 183 LVKEAKVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQV-LDHF-NLKAWTCVSDDFD--V 258 (1521)
Q Consensus 183 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~ 258 (1521)
+.+...||||++++++|.++|... ++..++|+|+||||+||||||++++++.+. ..+| +.++||++++..+ .
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHHC----CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHH
T ss_conf 999864125799999999998613----5887779999189888889999986075678862788179999788572679
Q ss_pred HHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCCHHHHCCCCCCCCCCCEEEEECCC
Q ss_conf 9999999998102888---78546889999999881794--399998187885802544630335679998099998055
Q 000427 259 IRLTKTILTSIVADQN---VDNLNLNSLQEKLNKQLSGK--KFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 259 ~~~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~s~iiiTtr~ 333 (1521)
...+..++..+..... ....+.+++...++..+.++ |+||||||||+. ..|..+ .+|++||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECCC
T ss_conf 99999999986553033347887778999999999735678789999567997--788763-------689789999277
Q ss_pred HHHHHH-HCCCCCEECCC-CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 788975-08878250799-9945399999995609999999712799999999851997379999985407999945899
Q 000427 334 QEVAKI-MGTVPAYQLKK-LSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNHDRSEWE 411 (1521)
Q Consensus 334 ~~~~~~-~~~~~~~~l~~-l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~ 411 (1521)
+.++.. ++....+++.+ |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++++.+. ..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC-----HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHH
T ss_conf 899876348843798258888788999999865798-----134838899999984997799999999862480--5799
Q ss_pred HHHHCCCCC----CC----CCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 988103546----86----4335811599996730794568798575255899523968999999971976579999986
Q 000427 412 DVLSSKIWE----LP----EERCGIIPALAVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSC 483 (1521)
Q Consensus 412 ~~l~~~~~~----~~----~~~~~v~~~l~~sy~~L~~~~k~~~~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~ 483 (1521)
..+...... +. ...+.+..+|.+||+.|++++|.||++||+||+++.|+++.++.+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------ 407 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------ 407 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------
T ss_conf 99999865044303465564467799999989986799999999972813799751899999885898------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCCCEEEEHHHHHHHHHHHCCC
Q ss_conf 5789999999995878531489-9894788055899999951244
Q 000427 484 DDFGRKIFKELHSRSFFQQSSN-DASRFVMHDLISDLAQWAAGEI 527 (1521)
Q Consensus 484 ~~~~~~~~~~L~~~~li~~~~~-~~~~~~mHdlv~~~~~~~~~~~ 527 (1521)
++.+++++++|+++||++.... ...+|+||++||++++.++.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 889999999997446338963798118996689999987450678
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=368.22 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=58.3
Q ss_pred CCEEEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC-CCCHHCCCCCCEEECCCCCCHHHCCC-CCCCCCCCCEEC
Q ss_conf 83049997476543348-2323876332664258744324-61100246564873278640312100-112647875001
Q 000427 600 QRLRVFSLRGYHIYELP-DSIGDLRYLRYLNLSGTRIITL-PESVNTLYNLHTLLLEGCLRLKKLCA-DMGNLIKLHYLN 676 (1521)
Q Consensus 600 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 676 (1521)
+.+++|++++|.+..+| ..|+++.+|++|++++|.+..+ |..+.++++|++|++++| .+..+|. .|+.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEE
T ss_conf 88768889899778759788717876758878899648569778740667688889998-56756854530388889898
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 46888743356-777777764445
Q 000427 677 NSYTGSLEEMP-LGFGKLTCLQTL 699 (1521)
Q Consensus 677 l~~~~~~~~lp-~~i~~L~~L~~L 699 (1521)
+++|. +..+| ..++++++|++|
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEE
T ss_pred CCCCC-CCCCCHHHCCCCCCCCEE
T ss_conf 98996-685396674156788889
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=352.80 Aligned_cols=100 Identities=24% Similarity=0.223 Sum_probs=42.8
Q ss_pred CCCCEEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCC-CHHCCCCCCEEECCCCCCHHHCC-CCCCCCCCCCE
Q ss_conf 458304999747654334-8232387633266425874432461-10024656487327864031210-01126478750
Q 000427 598 KLQRLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTRIITLPE-SVNTLYNLHTLLLEGCLRLKKLC-ADMGNLIKLHY 674 (1521)
Q Consensus 598 ~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 674 (1521)
.++.|++|++++|.+..+ |..|+++.+|++|++++|.+..+|. .+.++++|++|++++|. +..+| ..++++++|++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCCE
T ss_conf 78767588788996485697787406676888899985675685453038888989898996-68539667415678888
Q ss_pred ECCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 014688874335-6777777764445
Q 000427 675 LNNSYTGSLEEM-PLGFGKLTCLQTL 699 (1521)
Q Consensus 675 L~l~~~~~~~~l-p~~i~~L~~L~~L 699 (1521)
|++++|. +... |..++++++|++|
T Consensus 126 L~Ls~n~-l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 126 LDLSHNG-LSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp EECCSSC-CSCCCCCSSSCCTTCCEE
T ss_pred EECCCCC-CCCCCCHHHCCCCCCCEE
T ss_conf 9898995-246672111245567779
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=339.08 Aligned_cols=176 Identities=13% Similarity=0.113 Sum_probs=117.5
Q ss_pred CCCCEEEECCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEE
Q ss_conf 9754798514787001343217999865898625899853478-777742210344304688100554305899865376
Q 000427 1207 PSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILPS-GLHNLRQLRKISIQMCGNLESIAERLDNNTSLEDIY 1285 (1521)
Q Consensus 1207 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1285 (1521)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 88898989899677578887347745776878888677756521241765588898989855776877873788788898
Q ss_pred ECCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCC-
Q ss_conf 314556333---5644789887654530357786447999888666333640224461444443678876333784578-
Q 000427 1286 ISECENLKI---LPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIGGE- 1361 (1521)
Q Consensus 1286 l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~- 1361 (1521)
+++|.+.+. .+..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+..|..+.++++| .|+++++
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCC
T ss_conf 98998885434543124048876688799996670686463265678889898980686896684756651-89876894
Q ss_pred CCCC--CCCCCCCCCCEEEECCCC
Q ss_conf 7885--468987653156512664
Q 000427 1362 LPSL--EEDGLPTKIQSLHIRGNM 1383 (1521)
Q Consensus 1362 ~~~~--~~~~~~~~L~~L~ls~n~ 1383 (1521)
+... ..+..+++|+.|++++|+
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CCCCCHHHCCCCCCCCEEECCCCC
T ss_conf 142687662567787889677998
No 8
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=338.55 Aligned_cols=286 Identities=18% Similarity=0.250 Sum_probs=227.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCE-EEEEEECCCCCHHHHHHHHH
Q ss_conf 32341357999999983288899999289999948998499999999557010035660-49999189778899999999
Q 000427 188 KVYGREIEKKDVVELLLRDDLSNDGGFSVIPIVGMGGLGKTTLAQLVYNDKQVLDHFNL-KAWTCVSDDFDVIRLTKTIL 266 (1521)
Q Consensus 188 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 266 (1521)
..|||+.++++|.++|...+ ..++|+|+||||+||||||++++++.++..+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77892899999999974358-----9718999769996679999999971498874899389998289999999999999
Q ss_pred HHHHCCC---C--CC-----CCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCEEEEECCC
Q ss_conf 9810288---8--78-----546889999999881---794399998187885802544630335679998099998055
Q 000427 267 TSIVADQ---N--VD-----NLNLNSLQEKLNKQL---SGKKFLLVLDDVWNRNYDDWDQLRRPFEVGAPGSKIIVTTRN 333 (1521)
Q Consensus 267 ~~l~~~~---~--~~-----~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~s~iiiTtr~ 333 (1521)
..+.... . .+ ..+.+++...+++.+ .++|+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEECCC
T ss_conf 99862272102200134679999999999999999850478879987186818--999864----7---98299994437
Q ss_pred HHHHHHHCCCCCEECC------CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-C
Q ss_conf 7889750887825079------99945399999995609999999712799999999851997379999985407999-9
Q 000427 334 QEVAKIMGTVPAYQLK------KLSDNDCLAVFVQHSLGTRDFSSHKSLEEIGKKIVTKCDGLPLAAQTLGGLLRGNH-D 406 (1521)
Q Consensus 334 ~~~~~~~~~~~~~~l~------~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~ 406 (1521)
+.++..+.....+.++ +|+.+|||+||.+.. +.. . .+...+| |+|+||||+++|+.++.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCC
T ss_conf 3799866897089946865568969999999999974-998----8---9999999---698999999999998488997
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 4589998810354686433581159999673079456-879857525589952396899999997197657999998657
Q 000427 407 RSEWEDVLSSKIWELPEERCGIIPALAVSYYYLSAPL-KQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKGSGNSCDD 485 (1521)
Q Consensus 407 ~~~w~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~-k~~~~~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~ 485 (1521)
.+.|... ....+..+|.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHHCC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HH
T ss_conf 9998669----------86189999999998488999999999971779999877999998766778-----------89
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHH
Q ss_conf 89999999995878531489989478805589999
Q 000427 486 FGRKIFKELHSRSFFQQSSNDASRFVMHDLISDLA 520 (1521)
Q Consensus 486 ~~~~~~~~L~~~~li~~~~~~~~~~~mHdlv~~~~ 520 (1521)
.++.++++|+++||++.. +...+|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEE-CCCCEEEEHHHHHHHH
T ss_conf 999999999961988986-8999898609999985
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=334.37 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=65.1
Q ss_pred CEEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC-CCCHHCCCCCCEEECCCCCCHHHCCCCCCCCCCCCEECCC
Q ss_conf 304999747654334-82323876332664258744324-6110024656487327864031210011264787500146
Q 000427 601 RLRVFSLRGYHIYEL-PDSIGDLRYLRYLNLSGTRIITL-PESVNTLYNLHTLLLEGCLRLKKLCADMGNLIKLHYLNNS 678 (1521)
Q Consensus 601 ~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 678 (1521)
.+++|++++|.+..+ |..|+++.+|++|++++|.+..+ |..+.++++|++|++++|......|..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 88874335-6777777764445
Q 000427 679 YTGSLEEM-PLGFGKLTCLQTL 699 (1521)
Q Consensus 679 ~~~~~~~l-p~~i~~L~~L~~L 699 (1521)
+|. +..+ |..++++++|++|
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEE
T ss_pred CCC-CCCCCCCHHCCCCCCCEE
T ss_conf 267-665781012237822389
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=333.78 Aligned_cols=266 Identities=13% Similarity=0.073 Sum_probs=149.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 45565583027994224875568788767998069997657887788866478954379887787111147799855788
Q 000427 1042 SRLEYLELNRCEGLVKLPQSSFSLSSLREIEIYNCSSLVSFPEVALPSKLKEIQIGHCDALKSLPEAWMCDTHSSLEILN 1121 (1521)
Q Consensus 1042 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 1121 (1521)
++|+.|++++|.+. .++ .+..+++|+.|++++|.. +.+|.+ .+++|++|++++|......+. ..+++|+.|+
T Consensus 285 ~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKK----VALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCC----CCCTTCCEEE
T ss_pred CCCCEEEECCCCCH-HHH-HCCCCCCCCEEECCCCCC-CCCCCC-CCCCCCEEECCCCCCCCCHHH----CCCCCCCEEE
T ss_conf 87898771476604-435-433401177897646667-654667-887556445447868531000----2489888797
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 72378831002335999886489827779986552336445789977755534677614899532123589720110013
Q 000427 1122 IQYCCSLTYIAAVQLPSSLKKLKIWRCDNIRTLTVDEGIQCSSSSRYTSSILEHLSIDGCPSLKCIFSKNELPATLESLE 1201 (1521)
Q Consensus 1122 L~~~~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~ 1201 (1521)
+++|.. +... . .+. .
T Consensus 357 ls~n~l-~~~~-----------------------------------------------~------------~~~-----~ 371 (606)
T 3vq2_A 357 LSRNAL-SFSG-----------------------------------------------C------------CSY-----S 371 (606)
T ss_dssp CCSSCE-EEEE-----------------------------------------------E------------CCH-----H
T ss_pred CCCCCC-CCCC-----------------------------------------------C------------HHH-----H
T ss_conf 758736-8775-----------------------------------------------2------------012-----2
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 57899975479851478700134321799986589862589985347-87777422103443046881005543058998
Q 000427 1202 VGNLPPSLKSLDVYRCSKLESIAERLDNNTSLETIRISNCESPKILP-SGLHNLRQLRKISIQMCGNLESIAERLDNNTS 1280 (1521)
Q Consensus 1202 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 1280 (1521)
+..+ ++|+.|++++|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++
T Consensus 372 ~~~~-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 372 DLGT-NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHCC-SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred HCCC-CCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 1467-755486788995300-05540688888965898870587537645646213788989689787433555347787
Q ss_pred CCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 6537631455633-356447898876545303577864479998886663336402244614444436788763337845
Q 000427 1281 LEDIYISECENLK-ILPSGLHNLHQLREISVERCGNLVSFPEGGLPCAKVTKLCIRWCKRLEALPKGLHNLTSVQELRIG 1359 (1521)
Q Consensus 1281 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 1359 (1521)
|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf 89898989837985467760457889989898885776486561546468989898995787487770688768988898
Q ss_pred C-CCCCCCC-CCCC-CCCCEEEECCC
Q ss_conf 7-8788546-8987-65315651266
Q 000427 1360 G-ELPSLEE-DGLP-TKIQSLHIRGN 1382 (1521)
Q Consensus 1360 ~-~~~~~~~-~~~~-~~L~~L~ls~n 1382 (1521)
+ .+..++. +..+ ++|++|++++|
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred CCCCCCCCHHHHHHCCCCCEEECCCC
T ss_conf 98376668767521021748876289
Done!