BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000428
(1520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 1701 bits (4406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1509 (55%), Positives = 1095/1509 (72%), Gaps = 17/1509 (1%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 6 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 65
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 66 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 176
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 177 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 231
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 292 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 351
Query: 365 AKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQT 424
A R NL GAE L ++F LFAQ Y EAA++AA +P+G+LRTPDT+ +FQSVP Q GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411
Query: 425 PPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVD 484
PLLQYFG LL +G+LN +ESLEL R V+ Q +K LLE WL EDKLECSEELGDLVK+VD
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471
Query: 485 NDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVN 544
LAL +Y++A KV+ FAE + KI++Y+K+VGYTPD++FLL+ ++R P
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQ 531
Query: 545 FALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLV 604
FA M+ Q E D I D+F++ NLI++ TAFLLD LK N P G LQT++LE+NL+
Sbjct: 532 FAQMLVQDEEPL-ADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLM 590
Query: 605 TFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQS 664
P VADAIL N MF+HYDR IAQLCEKAGL RAL+H+T+L DIKR +V+TH + P+
Sbjct: 591 HAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEW 650
Query: 665 LVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEX 724
LV +FG+LS E +LEC++ +L N+R NLQI VQ A +Y EQL ++ I+LFE FKS+E
Sbjct: 651 LVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG 710
Query: 725 XXXXXXXXXXXXEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPD 784
+DPD+HFKYI+AA KTGQIKEVER+ RESN YDPE+ KNFL EAKL D
Sbjct: 711 LFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD 770
Query: 785 ARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIK 844
PLI VCDRF FV DL YLY NN+ +YIE YVQKVNP P+V+G LLD +C ED IK
Sbjct: 771 QLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIK 830
Query: 845 GLILSVRSXXXXXXXXXXCEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNP 904
LIL VR EKRNRL+LL +LE + EG ++ HNAL KI IDSNNNP
Sbjct: 831 NLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNP 890
Query: 905 EHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVER 964
E FL NPYYDSRVVGKYCEKRDP LA VAY RGQCD ELINV N+NSLFK +RY+V R
Sbjct: 891 ERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR 950
Query: 965 MDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEK 1024
D +LW VL N YRR LIDQVV TAL E++ PE+VS VKAFMTADLP+ELIELLEK
Sbjct: 951 KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEK 1010
Query: 1025 IVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFA 1084
IVL NS FS + NLQNLLILTAIKAD +RVM+Y+NRLDN+D P + +A+ +L+EEAFA
Sbjct: 1011 IVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFA 1070
Query: 1085 IFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIR 1144
IF+KF++N AV VL+++I +++RA EFA R E AVWSQ+AKAQL++G+V +AI+S+I+
Sbjct: 1071 IFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130
Query: 1145 ADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFI 1204
ADD + +++V++AA + + +LV+YL M R+K +E V++ELI+A AK +RL ++EEFI
Sbjct: 1131 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI 1190
Query: 1205 LMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSA 1264
PN A++Q VGDR YD+ +Y+AAK++Y +SN+ +LA TLV L ++Q AVD ARKANS
Sbjct: 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 1250
Query: 1265 KTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324
+TWKEVCFACVD +EFRLAQ+CGL+I+V D+LEE+ YYQ+RGYF ELI+++E+ LGLE
Sbjct: 1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310
Query: 1325 RAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDE 1384
RAHMG+FTEL +LY++++ +K+ EH++LF +R+NIPK++RA ++ W EL +LY +Y+E
Sbjct: 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370
Query: 1385 FDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRV 1444
+DNA T+MNH +AW QFKD+ KVANVELYY+A+ FYL+ P L+NDLL VL+ R+
Sbjct: 1371 YDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 1430
Query: 1445 DHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNF 1504
DHTR V+ K L LVKPY+ E+LN +++ EEDY+ LR SID +DNF
Sbjct: 1431 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNF 1490
Query: 1505 DQIGLARRL 1513
D I LA+RL
Sbjct: 1491 DNISLAQRL 1499
>pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|B Chain B, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|C Chain C, Clathrin Heavy-Chain Terminal Domain And Linker
Length = 494
Score = 521 bits (1342), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/503 (52%), Positives = 347/503 (68%), Gaps = 16/503 (3%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 6 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 65
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 66 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 176
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 177 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 231
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 292 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 351
Query: 365 AKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQT 424
A R NL GAE L ++F LFAQ Y EAA++AA +P+G+LRTPDT+ +FQSVP Q GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411
Query: 425 PPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVD 484
PLLQYFG LL +G+LN +ESLEL R V+ Q +K LLE WL EDKLECSEELGDLVK+VD
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471
Query: 485 NDLALKIYIKARATPKVVAAFAE 507
LAL +Y++A KV+ FAE
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAE 494
>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin Lig
Complex
pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin Lig
Complex
pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin Lig
Complex
pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 624
Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/426 (53%), Positives = 326/426 (76%)
Query: 1088 KFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADD 1147
KF++N AV VL+++I +++RA EFA R E AVWSQ+AKAQL++G+V +AI+S+I+ADD
Sbjct: 23 KFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD 82
Query: 1148 ATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMP 1207
+ +++V++AA + + +LV+YL M R+K +E V++ELI+A AK +RL ++EEFI P
Sbjct: 83 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 142
Query: 1208 NVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267
N A++Q VGDR YD+ +Y+AAK++Y +SN+ +LA TLV L ++Q AVD ARKANS +TW
Sbjct: 143 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202
Query: 1268 KEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAH 1327
KEVCFACVD +EFRLAQ+CGL+I+V D+LEE+ YYQ+RGYF ELI+++E+ LGLERAH
Sbjct: 203 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 262
Query: 1328 MGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDN 1387
MG+FTEL +LY++++ +K+ EH++LF +R+NIPK++RA ++ W EL +LY +Y+E+DN
Sbjct: 263 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 322
Query: 1388 AATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHT 1447
A T+MNH +AW QFKD+ KVANVELYY+A+ FYL+ P L+NDLL VL+ R+DHT
Sbjct: 323 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT 382
Query: 1448 RVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQI 1507
R V+ K L LVKPY+ E+LN +++ EEDY+ LR SID +DNFD I
Sbjct: 383 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNI 442
Query: 1508 GLARRL 1513
LA+RL
Sbjct: 443 SLAQRL 448
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/426 (53%), Positives = 319/426 (74%)
Query: 1088 KFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADD 1147
KF++N AV VL+++I +++RA EFA R E AVWSQ+AKAQL++G+V +AI+S+I+ADD
Sbjct: 1 KFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADD 60
Query: 1148 ATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMP 1207
+ +++V++AA + + +LV+YL M R+K +E V++ELI+A AK +RL ++EEFI P
Sbjct: 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 120
Query: 1208 NVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267
N A++Q VGDR YD+ +Y+AAK++Y +SN+ +LA TLV L ++Q AVD ARKANS +TW
Sbjct: 121 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 180
Query: 1268 KEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAH 1327
KEVCFACVD +EFRLAQ CGL+I+V D+LEE+ YYQ+RGYF ELI+ +E+ LGLERAH
Sbjct: 181 KEVCFACVDGKEFRLAQXCGLHIVVHADELEELINYYQDRGYFEELITXLEAALGLERAH 240
Query: 1328 MGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDN 1387
G FTEL +LY++++ +K EH++LF +R+NIPK++RA ++ W EL +LY +Y+E+DN
Sbjct: 241 XGXFTELAILYSKFKPQKXREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300
Query: 1388 AATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHT 1447
A T NH +AW QFKD+ KVANVELYY+A+ FYL+ P L+NDLL VL+ R+DHT
Sbjct: 301 AIITXXNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLXVLSPRLDHT 360
Query: 1448 RVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQI 1507
R V+ K L LVKPY+ E+LN +++ EEDY+ LR SID +DNFD I
Sbjct: 361 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNI 420
Query: 1508 GLARRL 1513
LA+RL
Sbjct: 421 SLAQRL 426
>pdb|4G55|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 2
Length = 369
Score = 353 bits (906), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 247/372 (66%), Gaps = 16/372 (4%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 11 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 70
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 71 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 124
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 125 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 181
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 182 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 236
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 237 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 296
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 297 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 356
Query: 365 AKRGNLPGAENL 376
A R NL GAE L
Sbjct: 357 AVRNNLAGAEEL 368
>pdb|1UTC|A Chain A, Clathrin Terminal Domain Complexed With Tlpwdlwtt
pdb|1UTC|B Chain B, Clathrin Terminal Domain Complexed With Tlpwdlwtt
pdb|3GC3|B Chain B, Crystal Structure Of Arrestin2s And Clathrin
pdb|3GD1|I Chain I, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 363
Score = 353 bits (905), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 247/372 (66%), Gaps = 16/372 (4%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 6 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 65
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 66 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 176
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 177 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 231
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 292 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 351
Query: 365 AKRGNLPGAENL 376
A R NL GAE L
Sbjct: 352 AVRNNLAGAEEL 363
>pdb|2XZG|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 1
Length = 365
Score = 353 bits (905), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 184/372 (49%), Positives = 247/372 (66%), Gaps = 16/372 (4%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 7 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 66
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 67 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 120
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 121 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 177
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 178 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 232
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 233 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 293 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 352
Query: 365 AKRGNLPGAENL 376
A R NL GAE L
Sbjct: 353 AVRNNLAGAEEL 364
>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9I|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 359
Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/368 (49%), Positives = 244/368 (66%), Gaps = 16/368 (4%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 6 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 65
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 66 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 176
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 177 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 231
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 292 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 351
Query: 365 AKRGNLPG 372
A R NL G
Sbjct: 352 AVRNNLAG 359
>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9L|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 357
Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/368 (49%), Positives = 244/368 (66%), Gaps = 16/368 (4%)
Query: 7 PISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE-TAPQNSVVIIDMNQPMQPLRRP 65
PI +E L L ++GINP I F+ +TMESDK+IC+RE Q VVIIDMN P P+RRP
Sbjct: 4 PIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 63
Query: 66 ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125
I+ADSA+MNP S+++ALKA G T LQIFNIE+K+K+K+H M++ V FWKWIS +
Sbjct: 64 ISADSAIMNPASKVIALKA---GKT---LQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 117
Query: 126 GVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185
+VT +VYHWS+EG+S+PVKMFDR ++L QIINY+ D +KWL+L GI SA++ +
Sbjct: 118 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI---SAQQNR 174
Query: 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVI 245
+V G MQL+SVD++ SQ +E HAASFAQFK+ GN S L FA + GQ KLH+I
Sbjct: 175 VV-GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR----GQAGGKLHII 229
Query: 246 ELGAQP-GKPSFTKKQXXXXXXXXXXXXXXXXMQISHKYGLIYVITKLGLLFVYDLETAA 304
E+G P G F KK MQIS K+ ++++ITK G + +YDLET
Sbjct: 230 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 289
Query: 305 AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNL 364
+Y NRIS + IF+T+ + G +NR+GQVL V E I+P+++ L N +LA+ +
Sbjct: 290 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRM 349
Query: 365 AKRGNLPG 372
A R NL G
Sbjct: 350 AVRNNLAG 357
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 382 QELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQY--FGTLLTRGK 439
Q F TK K A+ G++RT +T ++VP+ Q LL + LT G
Sbjct: 147 QVAFDFTKVKRGAD-------GVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGV 199
Query: 440 LNAFESL---ELSRLVVNQNKK--NLLENWLAEDKLECSEEL 476
+NA L + RL N+ NLLE + K +C E L
Sbjct: 200 INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGL 241
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 382 QELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQY--FGTLLTRGK 439
Q F TK K A+ G++RT +T ++VP+ Q LL + LT G
Sbjct: 147 QVAFDFTKVKRGAD-------GVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGV 199
Query: 440 LNAFESL---ELSRLVV--NQNKKNLLENWLAEDKLECSEEL 476
+NA L + RL N+ NLLE + K +C E L
Sbjct: 200 INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGL 241
>pdb|1YJQ|A Chain A, Crystal Structure Of Ketopantoate Reductase In Complex
With Nadp+
pdb|1YON|A Chain A, Escherichia Coli Ketopantoate Reductase In Complex With 2-
Monophosphoadenosine-5'-Diphosphate
Length = 303
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 578 AFLLDVLKPNLPE---HGFLQTKV---LEINLVTFPNVADAILANGMFSHYDRPRIAQLC 631
++L D+L+ LP+ H ++ ++ L +N V P A NG H+ + I Q+C
Sbjct: 150 SYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQ-EIMQIC 208
Query: 632 EKAGLYMRALQHYTELPDIK 651
E+ + H+T D++
Sbjct: 209 EEVAAVIEREGHHTSAEDLR 228
>pdb|1KS9|A Chain A, Ketopantoate Reductase From Escherichia Coli
Length = 291
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 578 AFLLDVLKPNLPE---HGFLQTKV---LEINLVTFPNVADAILANGMFSHYDRPRIAQLC 631
++L D+L+ LP+ H ++ ++ L +N V P A NG H+ + I Q+C
Sbjct: 150 SYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQ-EIMQIC 208
Query: 632 EKAGLYMRALQHYTELPDIK 651
E+ + H+T D++
Sbjct: 209 EEVAAVIEREGHHTSAEDLR 228
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 382 QELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQY--FGTLLTRGK 439
Q F TK K A+ G++RT +T ++VP+ Q LL + LT G
Sbjct: 147 QVAFDFTKVKRGAD-------GVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGV 199
Query: 440 LNAFESL---ELSRLVVNQNKK--NLLENWLAEDKLECSEEL 476
+NA L + RL N+ NLLE + K +C E L
Sbjct: 200 INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGL 241
>pdb|2OFP|A Chain A, Crystal Structure Of Escherichia Coli Ketopantoate
Reductase In A Ternary Complex With Nadp+ And Pantoate
pdb|2OFP|B Chain B, Crystal Structure Of Escherichia Coli Ketopantoate
Reductase In A Ternary Complex With Nadp+ And Pantoate
Length = 320
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 578 AFLLDVLKPNLPE---HGFLQTKV---LEINLVTFPNVADAILANGMFSHYDRPRIAQLC 631
++L D+L+ LP+ H ++ ++ L +N V P A NG H+ + I Q+C
Sbjct: 167 SYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQ-EIMQIC 225
Query: 632 EKAGLYMRALQHYTELPDIK 651
E+ + H+T D++
Sbjct: 226 EEVAAVIEREGHHTSAEDLR 245
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 382 QELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQY--FGTLLTRGK 439
Q F TK K A+ G++RT +T ++VP+ Q LL + LT G
Sbjct: 140 QVAFDFTKVKRGAD-------GVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGV 192
Query: 440 LNAFESL---ELSRLVVNQNKK--NLLENWLAEDKLECSEEL 476
+NA L + RL N+ NLLE + K +C E L
Sbjct: 193 INAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGL 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,465,433
Number of Sequences: 62578
Number of extensions: 1652906
Number of successful extensions: 3730
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3680
Number of HSP's gapped (non-prelim): 20
length of query: 1520
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1409
effective length of database: 8,027,179
effective search space: 11310295211
effective search space used: 11310295211
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)