Query 000428
Match_columns 1520
No_of_seqs 257 out of 438
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0985 Vesicle coat protein c 100.0 0E+00 0E+00 4367.0 129.7 1502 3-1519 1-1504(1666)
2 KOG0985 Vesicle coat protein c 100.0 2E-113 4E-118 1029.0 35.4 765 333-1166 636-1580(1666)
3 KOG3617 WD40 and TPR repeat-co 100.0 7.6E-31 1.6E-35 313.8 26.1 392 1065-1507 802-1259(1416)
4 PF13838 Clathrin_H_link: Clat 100.0 8.7E-29 1.9E-33 222.7 6.8 66 369-434 1-66 (66)
5 TIGR02917 PEP_TPR_lipo putativ 99.8 7.4E-14 1.6E-18 177.7 77.8 803 360-1389 10-857 (899)
6 TIGR02917 PEP_TPR_lipo putativ 99.8 2.4E-12 5.2E-17 164.0 77.1 817 422-1455 36-896 (899)
7 smart00299 CLH Clathrin heavy 99.7 2E-16 4.4E-21 162.8 15.2 137 993-1132 1-138 (140)
8 KOG2066 Vacuolar assembly/sort 99.6 1.1E-13 2.5E-18 169.7 22.9 350 1065-1475 358-749 (846)
9 PLN03077 Protein ECB2; Provisi 99.5 8.8E-10 1.9E-14 144.8 56.2 534 554-1259 48-613 (857)
10 smart00299 CLH Clathrin heavy 99.5 6.2E-14 1.4E-18 144.4 13.8 138 1290-1430 3-140 (140)
11 PF00637 Clathrin: Region in C 99.5 3E-16 6.6E-21 161.8 -7.7 138 994-1134 2-140 (143)
12 PRK11447 cellulose synthase su 99.5 1.5E-09 3.2E-14 147.0 53.6 647 513-1321 33-738 (1157)
13 PLN03077 Protein ECB2; Provisi 99.4 4.7E-08 1E-12 128.7 55.6 619 498-1320 54-717 (857)
14 PLN03081 pentatricopeptide (PP 99.3 1.2E-08 2.7E-13 131.3 39.9 384 998-1392 122-551 (697)
15 PRK11447 cellulose synthase su 99.2 2.1E-07 4.6E-12 126.4 49.8 590 713-1390 35-692 (1157)
16 PRK09782 bacteriophage N4 rece 99.1 1.4E-05 3.1E-10 106.4 53.7 593 561-1326 82-743 (987)
17 PF00637 Clathrin: Region in C 99.0 4.9E-12 1.1E-16 130.6 -6.1 139 1143-1281 2-142 (143)
18 PLN03081 pentatricopeptide (PP 99.0 5.2E-07 1.1E-11 116.5 36.4 224 1118-1341 289-541 (697)
19 PLN03218 maturation of RBCL 1; 99.0 5.3E-07 1.1E-11 120.4 36.6 270 990-1260 361-674 (1060)
20 TIGR00990 3a0801s09 mitochondr 98.9 4.1E-07 8.9E-12 115.8 31.3 201 1187-1392 337-565 (615)
21 TIGR00990 3a0801s09 mitochondr 98.9 1.8E-06 4E-11 109.9 33.3 76 1301-1378 515-590 (615)
22 PRK09782 bacteriophage N4 rece 98.9 4.1E-05 8.8E-10 102.2 46.6 195 1118-1338 476-687 (987)
23 PLN03218 maturation of RBCL 1; 98.8 2.5E-06 5.5E-11 114.1 31.9 205 1117-1321 540-781 (1060)
24 KOG4626 O-linked N-acetylgluco 98.8 6.8E-07 1.5E-11 108.6 23.3 364 1000-1455 117-522 (966)
25 KOG2114 Vacuolar assembly/sort 98.7 1E-05 2.2E-10 101.8 32.7 203 953-1176 370-590 (933)
26 PRK15174 Vi polysaccharide exp 98.7 2.1E-06 4.6E-11 110.4 27.5 212 1048-1261 29-276 (656)
27 PRK15174 Vi polysaccharide exp 98.6 6.7E-06 1.5E-10 105.8 27.9 234 1002-1262 45-311 (656)
28 PRK11788 tetratricopeptide rep 98.6 7E-06 1.5E-10 97.5 24.0 115 1215-1329 186-317 (389)
29 KOG3616 Selective LIM binding 98.4 0.0023 5.1E-08 79.5 40.3 283 1067-1396 769-1074(1636)
30 PF01394 Clathrin_propel: Clat 98.4 1.3E-07 2.8E-12 77.4 3.2 37 154-197 1-37 (37)
31 KOG3617 WD40 and TPR repeat-co 98.4 1E-05 2.2E-10 100.7 20.6 276 1047-1342 895-1274(1416)
32 PRK10049 pgaA outer membrane p 98.4 0.00013 2.9E-09 95.6 32.5 348 1002-1392 52-450 (765)
33 KOG4626 O-linked N-acetylgluco 98.4 2.6E-05 5.6E-10 95.4 21.1 302 1002-1357 153-483 (966)
34 PRK11788 tetratricopeptide rep 98.3 7E-05 1.5E-09 89.0 23.7 242 1116-1392 32-305 (389)
35 KOG1840 Kinesin light chain [C 98.3 3.1E-05 6.7E-10 96.2 20.6 224 1069-1329 205-485 (508)
36 cd00200 WD40 WD40 domain, foun 98.2 0.00059 1.3E-08 73.7 25.5 257 37-337 22-285 (289)
37 PRK10049 pgaA outer membrane p 98.2 0.0011 2.4E-08 87.2 32.2 361 1038-1444 18-457 (765)
38 KOG3616 Selective LIM binding 98.1 0.00031 6.8E-09 86.8 23.4 300 1069-1430 654-978 (1636)
39 PF13429 TPR_15: Tetratricopep 98.1 2.9E-06 6.2E-11 97.4 5.9 228 1068-1321 13-275 (280)
40 PF09268 Clathrin-link: Clathr 98.1 1.1E-06 2.4E-11 64.7 1.5 24 344-367 1-24 (24)
41 KOG2114 Vacuolar assembly/sort 98.1 0.0013 2.7E-08 83.8 28.4 182 1064-1267 335-522 (933)
42 KOG2066 Vacuolar assembly/sort 98.1 0.0006 1.3E-08 86.1 24.6 264 902-1192 468-744 (846)
43 cd00200 WD40 WD40 domain, foun 98.0 0.0009 2E-08 72.3 23.0 237 70-348 14-254 (289)
44 KOG2076 RNA polymerase III tra 98.0 0.0022 4.7E-08 82.4 29.1 309 1076-1404 140-526 (895)
45 KOG2041 WD40 repeat protein [G 98.0 0.00046 1E-08 85.4 21.7 212 1009-1267 685-910 (1189)
46 KOG2002 TPR-containing nuclear 97.8 0.012 2.7E-07 76.2 30.3 330 1107-1496 150-524 (1018)
47 KOG1155 Anaphase-promoting com 97.8 0.025 5.4E-07 68.8 30.4 357 858-1267 135-539 (559)
48 TIGR02521 type_IV_pilW type IV 97.8 0.00079 1.7E-08 72.0 16.4 143 1118-1260 30-194 (234)
49 PF04840 Vps16_C: Vps16, C-ter 97.8 0.014 3E-07 69.5 28.2 227 1036-1283 82-310 (319)
50 TIGR02521 type_IV_pilW type IV 97.8 0.0014 3E-08 70.2 18.1 170 1069-1260 37-228 (234)
51 KOG2041 WD40 repeat protein [G 97.7 0.0041 8.8E-08 77.5 22.3 111 1105-1263 678-788 (1189)
52 PRK10747 putative protoheme IX 97.7 0.0066 1.4E-07 74.0 24.6 111 1213-1323 267-390 (398)
53 PF14938 SNAP: Soluble NSF att 97.5 0.0053 1.1E-07 71.4 19.2 209 1076-1356 35-263 (282)
54 KOG2063 Vacuolar assembly/sort 97.5 0.0033 7.1E-08 82.2 18.4 232 890-1129 466-742 (877)
55 KOG2003 TPR repeat-containing 97.4 0.0044 9.6E-08 74.1 17.7 234 1001-1260 422-685 (840)
56 KOG1840 Kinesin light chain [C 97.4 0.005 1.1E-07 77.0 19.1 143 1120-1262 284-477 (508)
57 PRK11189 lipoprotein NlpI; Pro 97.4 0.0031 6.8E-08 73.8 16.0 150 1116-1266 95-267 (296)
58 KOG2076 RNA polymerase III tra 97.4 0.14 2.9E-06 66.7 30.9 194 1076-1312 316-544 (895)
59 PF13429 TPR_15: Tetratricopep 97.4 0.00097 2.1E-08 76.7 11.3 242 970-1233 14-272 (280)
60 PF04053 Coatomer_WDAD: Coatom 97.4 0.0013 2.8E-08 81.3 12.7 160 1047-1260 273-440 (443)
61 PRK11189 lipoprotein NlpI; Pro 97.3 0.0082 1.8E-07 70.3 18.3 183 1118-1324 63-266 (296)
62 KOG0547 Translocase of outer m 97.3 0.11 2.3E-06 63.9 27.3 156 1116-1326 391-569 (606)
63 PF14938 SNAP: Soluble NSF att 97.3 0.0055 1.2E-07 71.3 16.2 208 1069-1327 41-270 (282)
64 KOG1173 Anaphase-promoting com 97.3 0.0053 1.2E-07 75.8 16.4 192 1106-1327 298-522 (611)
65 KOG1126 DNA-binding cell divis 97.3 0.013 2.7E-07 73.8 19.8 206 1119-1326 317-555 (638)
66 TIGR00540 hemY_coli hemY prote 97.3 0.034 7.4E-07 68.0 23.4 226 1070-1322 125-398 (409)
67 PRK14720 transcript cleavage f 97.2 0.018 3.9E-07 76.1 21.8 365 1063-1493 25-415 (906)
68 KOG1920 IkappaB kinase complex 97.2 0.024 5.2E-07 75.0 21.7 215 1039-1284 792-1019(1265)
69 PRK10747 putative protoheme IX 97.2 0.054 1.2E-06 66.2 23.8 254 1104-1416 98-378 (398)
70 KOG1920 IkappaB kinase complex 97.2 0.098 2.1E-06 69.5 26.7 199 1041-1275 855-1066(1265)
71 PRK14574 hmsH outer membrane p 97.2 1.5 3.2E-05 58.8 38.1 431 1001-1502 37-531 (822)
72 PRK12370 invasion protein regu 97.1 0.016 3.5E-07 73.7 19.7 22 1239-1260 445-466 (553)
73 KOG2063 Vacuolar assembly/sort 97.1 0.025 5.4E-07 74.3 21.3 300 1182-1496 464-826 (877)
74 TIGR03866 PQQ_ABC_repeats PQQ- 97.1 0.15 3.3E-06 57.4 24.5 266 48-350 11-286 (300)
75 KOG2002 TPR-containing nuclear 97.0 2.5 5.4E-05 56.1 53.8 338 1004-1423 347-731 (1018)
76 TIGR00540 hemY_coli hemY prote 97.0 0.088 1.9E-06 64.5 23.3 112 1297-1416 266-387 (409)
77 KOG0624 dsRNA-activated protei 96.8 0.18 3.9E-06 59.7 22.4 199 1106-1329 22-258 (504)
78 KOG2047 mRNA splicing factor [ 96.8 2.8 6.1E-05 53.5 33.2 370 954-1357 91-577 (835)
79 KOG2003 TPR repeat-containing 96.6 0.072 1.6E-06 64.2 17.6 208 1075-1339 431-669 (840)
80 TIGR03302 OM_YfiO outer membra 96.6 0.07 1.5E-06 59.6 17.1 132 1120-1261 71-229 (235)
81 KOG3785 Uncharacterized conser 96.6 0.026 5.7E-07 66.4 13.4 156 1211-1367 58-228 (557)
82 KOG1126 DNA-binding cell divis 96.6 0.15 3.1E-06 64.7 20.7 155 1117-1276 351-530 (638)
83 PRK12370 invasion protein regu 96.4 0.25 5.4E-06 63.1 22.1 139 1117-1257 370-529 (553)
84 KOG0553 TPR repeat-containing 96.3 0.016 3.4E-07 67.5 9.8 90 1212-1326 84-181 (304)
85 COG2956 Predicted N-acetylgluc 96.3 0.52 1.1E-05 55.8 21.7 120 1186-1325 74-211 (389)
86 KOG1155 Anaphase-promoting com 96.3 0.39 8.5E-06 58.9 21.2 238 1124-1395 232-492 (559)
87 KOG1125 TPR repeat-containing 96.2 0.058 1.3E-06 67.2 14.3 247 1063-1370 285-569 (579)
88 PF12569 NARP1: NMDA receptor- 96.1 1.9 4.2E-05 54.9 27.3 294 1047-1366 16-378 (517)
89 PRK14574 hmsH outer membrane p 96.0 0.29 6.2E-06 65.3 20.3 182 1242-1457 109-319 (822)
90 KOG2034 Vacuolar sorting prote 96.0 0.95 2.1E-05 59.3 23.9 312 1121-1437 391-756 (911)
91 KOG1129 TPR repeat-containing 96.0 0.074 1.6E-06 62.5 12.9 198 1124-1323 228-458 (478)
92 TIGR03302 OM_YfiO outer membra 96.0 0.41 8.9E-06 53.5 18.8 163 1116-1320 30-229 (235)
93 KOG2055 WD40 repeat protein [G 95.9 0.11 2.5E-06 63.0 14.4 213 52-301 284-512 (514)
94 KOG1173 Anaphase-promoting com 95.8 1.8 3.8E-05 54.6 24.2 348 1049-1425 63-512 (611)
95 COG5010 TadD Flp pilus assembl 95.7 0.099 2.1E-06 60.1 12.3 116 1069-1206 106-227 (257)
96 KOG1586 Protein required for f 95.7 0.12 2.6E-06 58.7 12.4 109 1122-1258 50-177 (288)
97 TIGR03866 PQQ_ABC_repeats PQQ- 95.7 1.6 3.4E-05 49.2 21.9 224 47-311 52-289 (300)
98 KOG2376 Signal recognition par 95.6 3.7 8E-05 52.1 25.8 123 1208-1348 374-512 (652)
99 KOG1538 Uncharacterized conser 95.4 0.3 6.6E-06 61.3 15.6 239 1001-1322 600-845 (1081)
100 PLN03088 SGT1, suppressor of 95.4 0.065 1.4E-06 64.8 10.1 103 1212-1339 5-115 (356)
101 PTZ00421 coronin; Provisional 95.3 2 4.3E-05 54.5 23.2 235 35-309 39-298 (493)
102 PF12569 NARP1: NMDA receptor- 95.3 1.5 3.2E-05 55.9 22.0 270 1086-1395 14-334 (517)
103 PRK11028 6-phosphogluconolacto 95.3 5.5 0.00012 47.1 25.5 229 48-302 12-259 (330)
104 PF07035 Mic1: Colon cancer-as 95.3 0.17 3.8E-06 55.1 11.8 110 425-534 11-130 (167)
105 KOG1538 Uncharacterized conser 95.3 0.2 4.4E-06 62.8 13.5 216 1219-1460 566-790 (1081)
106 KOG0495 HAT repeat protein [RN 95.1 3.7 7.9E-05 52.6 23.7 276 1067-1364 520-838 (913)
107 COG2956 Predicted N-acetylgluc 95.1 0.33 7.2E-06 57.4 13.9 180 1004-1229 112-302 (389)
108 PRK15359 type III secretion sy 95.0 0.22 4.8E-06 52.4 11.6 87 1118-1261 23-118 (144)
109 cd05804 StaR_like StaR_like; a 95.0 5.2 0.00011 47.3 24.4 146 1115-1262 39-213 (355)
110 KOG0547 Translocase of outer m 95.0 7.6 0.00016 48.6 25.2 320 1126-1482 122-524 (606)
111 PF10366 Vps39_1: Vacuolar sor 94.8 0.099 2.2E-06 53.0 8.0 67 1183-1250 1-67 (108)
112 TIGR02552 LcrH_SycD type III s 94.6 0.17 3.6E-06 51.4 9.2 88 1212-1326 20-117 (135)
113 PF09976 TPR_21: Tetratricopep 94.6 0.54 1.2E-05 49.2 13.2 83 1213-1321 52-145 (145)
114 KOG1130 Predicted G-alpha GTPa 94.6 0.31 6.6E-06 58.9 12.2 136 1237-1395 197-341 (639)
115 PRK15179 Vi polysaccharide bio 94.5 0.51 1.1E-05 62.0 15.2 126 1106-1261 72-214 (694)
116 PLN00181 protein SPA1-RELATED; 94.5 1.8 3.8E-05 57.8 20.6 220 48-300 555-792 (793)
117 KOG0276 Vesicle coat complex C 94.4 0.2 4.3E-06 62.8 10.5 90 1213-1309 618-707 (794)
118 PRK15359 type III secretion sy 94.4 0.38 8.2E-06 50.7 11.4 85 1070-1176 31-120 (144)
119 TIGR02658 TTQ_MADH_Hv methylam 94.2 7.2 0.00016 47.6 22.9 258 33-321 53-351 (352)
120 PF00780 CNH: CNH domain; Int 94.1 1.3 2.9E-05 50.7 16.1 146 121-305 6-169 (275)
121 PF12895 Apc3: Anaphase-promot 94.0 0.18 3.9E-06 47.8 7.3 73 1222-1320 2-84 (84)
122 KOG0276 Vesicle coat complex C 94.0 0.32 6.8E-06 61.1 11.0 141 1067-1261 618-760 (794)
123 KOG1174 Anaphase-promoting com 93.9 4.9 0.00011 49.2 20.3 239 1117-1425 230-494 (564)
124 PRK14720 transcript cleavage f 93.9 1.9 4.2E-05 57.8 18.6 161 1207-1385 29-205 (906)
125 PF04840 Vps16_C: Vps16, C-ter 93.8 17 0.00038 43.7 25.0 244 1067-1316 4-284 (319)
126 PF12895 Apc3: Anaphase-promot 93.7 0.26 5.7E-06 46.6 7.9 56 1118-1173 24-83 (84)
127 PLN00181 protein SPA1-RELATED; 93.6 6.8 0.00015 52.4 23.4 197 73-307 540-744 (793)
128 PF13424 TPR_12: Tetratricopep 93.4 0.28 6E-06 45.5 7.3 68 1238-1323 8-75 (78)
129 KOG1585 Protein required for f 93.2 5.5 0.00012 46.1 18.1 92 1076-1176 31-138 (308)
130 KOG2376 Signal recognition par 93.1 35 0.00077 43.9 28.3 198 1240-1454 180-400 (652)
131 PRK15363 pathogenicity island 93.0 0.51 1.1E-05 51.1 9.5 90 1210-1324 36-133 (157)
132 cd05804 StaR_like StaR_like; a 93.0 21 0.00045 42.3 24.0 251 1120-1394 7-289 (355)
133 PF13414 TPR_11: TPR repeat; P 93.0 0.23 5.1E-06 44.8 6.0 60 1117-1176 1-66 (69)
134 PF04053 Coatomer_WDAD: Coatom 92.9 1.7 3.7E-05 54.4 15.2 31 6-43 21-51 (443)
135 COG3071 HemY Uncharacterized e 92.9 30 0.00065 42.6 24.8 110 1138-1261 269-387 (400)
136 PRK10370 formate-dependent nit 92.8 2 4.3E-05 47.9 14.2 92 1116-1235 70-170 (198)
137 KOG0548 Molecular co-chaperone 92.7 3.8 8.2E-05 51.5 17.4 88 1213-1326 362-458 (539)
138 KOG1130 Predicted G-alpha GTPa 92.7 1.2 2.7E-05 53.9 12.8 47 1085-1134 104-150 (639)
139 PRK02603 photosystem I assembl 92.6 0.6 1.3E-05 50.3 9.5 52 1212-1263 38-100 (172)
140 CHL00033 ycf3 photosystem I as 92.6 1.2 2.5E-05 47.7 11.6 108 1070-1197 42-167 (168)
141 KOG3060 Uncharacterized conser 92.5 1.9 4.1E-05 50.0 13.4 119 1263-1389 48-174 (289)
142 PRK03629 tolB translocation pr 92.5 9 0.0002 47.6 20.7 187 36-249 164-364 (429)
143 PLN03088 SGT1, suppressor of 92.4 0.83 1.8E-05 55.4 11.3 77 1116-1192 33-115 (356)
144 PRK03629 tolB translocation pr 92.4 6.4 0.00014 48.9 19.2 189 34-248 209-406 (429)
145 KOG2034 Vacuolar sorting prote 92.2 8.7 0.00019 50.9 20.3 197 1041-1268 497-706 (911)
146 PRK15179 Vi polysaccharide bio 92.2 1.4 3.1E-05 57.9 13.9 93 1207-1324 118-218 (694)
147 KOG0543 FKBP-type peptidyl-pro 92.2 0.42 9.1E-06 58.0 8.2 102 1212-1343 211-340 (397)
148 PF09295 ChAPs: ChAPs (Chs5p-A 92.0 1.1 2.3E-05 55.3 11.7 46 1216-1261 241-294 (395)
149 COG3071 HemY Uncharacterized e 91.9 5.6 0.00012 48.6 17.1 204 1154-1393 124-352 (400)
150 PF02897 Peptidase_S9_N: Proly 91.9 24 0.00052 43.2 23.3 135 38-177 94-247 (414)
151 PF01394 Clathrin_propel: Clat 91.9 0.16 3.5E-06 42.0 3.1 37 20-56 1-37 (37)
152 PRK04922 tolB translocation pr 91.7 9.5 0.0002 47.3 19.7 181 92-305 184-372 (433)
153 KOG2047 mRNA splicing factor [ 91.7 22 0.00049 45.9 22.3 280 1069-1395 144-451 (835)
154 KOG0319 WD40-repeat-containing 91.7 5.3 0.00011 51.6 17.1 272 35-353 31-321 (775)
155 COG3063 PilF Tfp pilus assembl 91.6 3.2 6.9E-05 47.6 13.8 111 1121-1261 37-165 (250)
156 PRK15363 pathogenicity island 91.6 2.2 4.9E-05 46.2 12.2 29 1117-1145 67-95 (157)
157 PRK04922 tolB translocation pr 91.6 15 0.00033 45.5 21.3 173 49-248 185-368 (433)
158 PRK00178 tolB translocation pr 91.5 13 0.00029 45.7 20.7 186 37-249 164-364 (430)
159 KOG1128 Uncharacterized conser 91.5 2.1 4.5E-05 55.4 13.5 44 1116-1162 392-438 (777)
160 PTZ00421 coronin; Provisional 91.5 31 0.00067 44.1 24.0 242 70-350 33-297 (493)
161 PRK04792 tolB translocation pr 91.4 16 0.00034 45.9 21.2 174 49-249 199-383 (448)
162 PRK04841 transcriptional regul 91.3 17 0.00036 49.1 22.9 142 1120-1261 342-517 (903)
163 KOG0548 Molecular co-chaperone 91.3 6.4 0.00014 49.6 17.1 154 1125-1326 230-390 (539)
164 PF13414 TPR_11: TPR repeat; P 91.1 0.33 7.2E-06 43.8 4.7 51 1212-1262 6-65 (69)
165 TIGR02800 propeller_TolB tol-p 91.1 19 0.00041 43.8 21.1 190 35-249 155-355 (417)
166 KOG4340 Uncharacterized conser 91.0 41 0.00088 40.2 26.5 264 1118-1396 43-337 (459)
167 PTZ00420 coronin; Provisional 91.0 36 0.00078 44.3 24.1 233 35-305 37-297 (568)
168 TIGR02552 LcrH_SycD type III s 90.9 2.3 4.9E-05 43.2 11.1 62 1116-1177 48-114 (135)
169 KOG0553 TPR repeat-containing 90.7 0.97 2.1E-05 53.2 9.0 93 1070-1182 88-200 (304)
170 KOG2111 Uncharacterized conser 90.7 23 0.00051 42.3 19.9 236 73-345 54-324 (346)
171 PF13424 TPR_12: Tetratricopep 90.6 0.3 6.5E-06 45.3 4.0 49 1213-1261 9-72 (78)
172 cd00189 TPR Tetratricopeptide 90.5 1.7 3.6E-05 38.5 8.7 56 1118-1173 33-93 (100)
173 PRK02603 photosystem I assembl 90.5 3.4 7.4E-05 44.5 12.6 75 1069-1163 41-121 (172)
174 PRK02889 tolB translocation pr 90.3 19 0.00041 44.7 20.4 179 92-305 176-364 (427)
175 PRK11028 6-phosphogluconolacto 90.3 27 0.00058 41.3 20.9 183 91-302 11-206 (330)
176 KOG2280 Vacuolar assembly/sort 90.2 41 0.00089 44.3 23.0 127 1153-1281 689-816 (829)
177 PRK11138 outer membrane biogen 89.9 52 0.0011 40.2 23.5 59 283-342 335-393 (394)
178 COG4783 Putative Zn-dependent 89.8 9 0.00019 47.9 16.5 139 1077-1236 308-452 (484)
179 PRK10370 formate-dependent nit 89.8 4.4 9.6E-05 45.2 13.0 92 1298-1394 77-169 (198)
180 TIGR02795 tol_pal_ybgF tol-pal 89.6 2.9 6.2E-05 40.8 10.2 58 1119-1176 2-67 (119)
181 PF10366 Vps39_1: Vacuolar sor 89.4 0.6 1.3E-05 47.5 5.3 66 1330-1396 1-66 (108)
182 KOG4340 Uncharacterized conser 89.4 43 0.00094 40.0 20.5 248 1151-1430 13-307 (459)
183 KOG2280 Vacuolar assembly/sort 89.3 89 0.0019 41.5 25.2 269 1064-1412 508-809 (829)
184 PRK05137 tolB translocation pr 89.2 27 0.00059 43.4 20.6 231 36-305 166-416 (435)
185 PF10282 Lactonase: Lactonase, 89.1 40 0.00086 40.7 21.3 269 18-346 34-325 (345)
186 KOG0291 WD40-repeat-containing 89.0 56 0.0012 43.1 22.8 288 27-354 16-346 (893)
187 KOG3785 Uncharacterized conser 89.0 64 0.0014 39.4 28.8 238 1011-1280 197-477 (557)
188 PF13432 TPR_16: Tetratricopep 88.9 0.43 9.2E-06 42.8 3.5 30 1116-1145 28-57 (65)
189 PRK10866 outer membrane biogen 88.5 31 0.00068 39.9 19.1 70 1117-1186 30-108 (243)
190 PRK01742 tolB translocation pr 88.4 18 0.0004 44.8 18.4 175 92-305 184-365 (429)
191 cd00189 TPR Tetratricopeptide 87.6 2.9 6.3E-05 36.9 8.1 89 1120-1235 1-94 (100)
192 KOG1128 Uncharacterized conser 87.5 12 0.00026 48.8 15.9 138 1211-1357 399-546 (777)
193 PRK10803 tol-pal system protei 87.2 3.6 7.8E-05 48.1 10.6 63 1075-1144 142-205 (263)
194 KOG0293 WD40 repeat-containing 87.1 15 0.00032 45.1 15.4 91 92-202 291-389 (519)
195 PF07035 Mic1: Colon cancer-as 86.9 9 0.00019 42.1 12.6 118 1177-1308 25-150 (167)
196 KOG1129 TPR repeat-containing 86.7 7.7 0.00017 46.4 12.6 209 1213-1471 227-457 (478)
197 PF13360 PQQ_2: PQQ-like domai 86.6 43 0.00094 37.0 18.4 58 283-344 173-231 (238)
198 PF13525 YfiO: Outer membrane 86.4 22 0.00047 39.7 15.8 134 1119-1260 5-166 (203)
199 PLN02789 farnesyltranstransfer 86.3 30 0.00066 41.7 17.9 95 1306-1405 83-184 (320)
200 PRK02889 tolB translocation pr 86.2 63 0.0014 40.2 21.3 185 37-249 165-361 (427)
201 PF04097 Nic96: Nup93/Nic96; 86.1 11 0.00024 49.2 15.2 259 384-655 121-448 (613)
202 COG3063 PilF Tfp pilus assembl 86.1 2.2 4.7E-05 48.9 7.6 119 1069-1236 75-200 (250)
203 PF13432 TPR_16: Tetratricopep 86.1 1.3 2.9E-05 39.6 4.9 48 1214-1261 2-57 (65)
204 TIGR03300 assembly_YfgL outer 86.0 56 0.0012 39.4 20.3 57 283-340 320-376 (377)
205 KOG4162 Predicted calmodulin-b 85.9 39 0.00085 44.6 19.2 126 1248-1391 650-776 (799)
206 PTZ00420 coronin; Provisional 85.9 78 0.0017 41.3 22.2 222 92-345 54-295 (568)
207 KOG4532 WD40-like repeat conta 85.8 11 0.00024 44.0 13.0 218 78-343 85-331 (344)
208 PLN02789 farnesyltranstransfer 85.7 43 0.00093 40.5 18.7 71 1049-1152 34-107 (320)
209 PF00515 TPR_1: Tetratricopept 85.7 0.84 1.8E-05 35.8 3.1 27 1119-1145 1-27 (34)
210 TIGR02800 propeller_TolB tol-p 85.6 75 0.0016 38.7 21.2 179 91-304 169-357 (417)
211 KOG1125 TPR repeat-containing 85.6 8.4 0.00018 49.0 12.9 231 988-1261 275-524 (579)
212 PF09976 TPR_21: Tetratricopep 85.5 10 0.00022 39.7 12.0 19 1242-1260 125-143 (145)
213 PF14559 TPR_19: Tetratricopep 84.8 1.7 3.6E-05 39.0 5.0 31 1115-1145 21-51 (68)
214 PF07719 TPR_2: Tetratricopept 84.6 0.99 2.1E-05 35.0 3.0 27 1119-1145 1-27 (34)
215 KOG2055 WD40 repeat protein [G 84.3 47 0.001 41.5 17.9 255 37-341 184-453 (514)
216 PF04733 Coatomer_E: Coatomer 84.3 2.7 5.8E-05 49.8 7.7 114 1126-1264 109-230 (290)
217 KOG3881 Uncharacterized conser 84.1 4.3 9.3E-05 49.2 9.2 150 188-350 124-284 (412)
218 PRK00178 tolB translocation pr 83.4 67 0.0015 39.7 19.7 187 34-248 209-406 (430)
219 PF14559 TPR_19: Tetratricopep 83.4 4 8.6E-05 36.6 6.8 58 1245-1327 1-58 (68)
220 COG5010 TadD Flp pilus assembl 82.9 13 0.00029 43.3 12.1 88 1116-1203 97-190 (257)
221 PF04733 Coatomer_E: Coatomer 82.8 12 0.00026 44.4 12.4 141 501-644 137-289 (290)
222 PF07569 Hira: TUP1-like enhan 82.8 1.6 3.5E-05 49.6 5.0 51 265-318 6-56 (219)
223 KOG0624 dsRNA-activated protei 82.7 37 0.00081 41.2 15.8 172 1070-1280 113-294 (504)
224 KOG0306 WD40-repeat-containing 82.7 12 0.00027 48.6 12.7 156 122-317 34-195 (888)
225 CHL00033 ycf3 photosystem I as 82.6 11 0.00023 40.4 10.9 61 1116-1176 32-100 (168)
226 KOG0550 Molecular chaperone (D 82.5 14 0.00031 45.5 12.7 154 1213-1380 207-368 (486)
227 TIGR02795 tol_pal_ybgF tol-pal 81.9 6.2 0.00013 38.5 8.1 49 1213-1261 43-102 (119)
228 KOG4162 Predicted calmodulin-b 81.4 8.1 0.00018 50.5 10.7 120 1076-1234 650-779 (799)
229 PF13525 YfiO: Outer membrane 81.2 28 0.00061 38.8 13.9 166 1078-1256 8-199 (203)
230 PF13281 DUF4071: Domain of un 81.1 46 0.00099 41.1 16.5 106 1036-1152 142-261 (374)
231 KOG2110 Uncharacterized conser 81.1 56 0.0012 39.9 16.6 180 77-304 56-251 (391)
232 KOG4642 Chaperone-dependent E3 81.0 13 0.00028 43.1 11.0 158 1210-1394 11-179 (284)
233 PRK04841 transcriptional regul 81.0 56 0.0012 44.2 19.2 139 1122-1260 576-756 (903)
234 KOG1156 N-terminal acetyltrans 80.3 20 0.00042 46.4 13.3 150 1212-1395 10-169 (700)
235 PF02259 FAT: FAT domain; Int 80.1 21 0.00045 42.2 13.1 186 502-692 5-218 (352)
236 PRK01742 tolB translocation pr 79.9 1E+02 0.0022 38.3 19.6 144 35-198 168-323 (429)
237 KOG1127 TPR repeat-containing 79.6 48 0.001 45.0 16.6 143 1116-1260 489-655 (1238)
238 PF09295 ChAPs: ChAPs (Chs5p-A 79.0 12 0.00026 46.4 10.9 88 1300-1396 206-295 (395)
239 PRK01029 tolB translocation pr 78.5 1.9E+02 0.0041 36.3 23.2 230 35-304 146-406 (428)
240 KOG4234 TPR repeat-containing 78.0 5.5 0.00012 44.9 6.8 88 1212-1324 98-198 (271)
241 KOG1941 Acetylcholine receptor 77.8 64 0.0014 39.6 15.7 129 1214-1352 127-301 (518)
242 PRK05137 tolB translocation pr 77.7 1.4E+02 0.003 37.2 19.9 195 32-249 210-413 (435)
243 KOG1585 Protein required for f 77.5 89 0.0019 36.7 16.1 177 1237-1447 73-261 (308)
244 PF07079 DUF1347: Protein of u 77.3 20 0.00043 44.8 11.7 159 1047-1267 351-528 (549)
245 PF13176 TPR_7: Tetratricopept 76.6 3.3 7.1E-05 33.5 3.5 23 1238-1260 2-24 (36)
246 KOG1586 Protein required for f 76.4 1.1E+02 0.0023 35.9 16.3 146 1299-1454 79-254 (288)
247 PLN03098 LPA1 LOW PSII ACCUMUL 75.7 5.2 0.00011 49.9 6.5 57 1207-1263 72-140 (453)
248 COG4783 Putative Zn-dependent 75.3 59 0.0013 41.1 15.1 102 1207-1321 337-452 (484)
249 PF13428 TPR_14: Tetratricopep 75.1 5.1 0.00011 33.7 4.4 32 1119-1150 1-34 (44)
250 PF12688 TPR_5: Tetratrico pep 74.3 37 0.0008 35.4 11.3 59 1119-1177 1-67 (120)
251 COG4105 ComL DNA uptake lipopr 74.0 65 0.0014 37.9 14.2 57 1117-1173 32-96 (254)
252 KOG0316 Conserved WD40 repeat- 73.9 1.3E+02 0.0028 35.1 16.1 176 91-317 80-273 (307)
253 COG5290 IkappaB kinase complex 73.8 59 0.0013 43.1 14.8 187 1032-1275 861-1048(1243)
254 PRK10866 outer membrane biogen 73.7 25 0.00053 40.7 11.0 24 1122-1145 72-95 (243)
255 KOG1587 Cytoplasmic dynein int 73.5 1.9E+02 0.004 37.9 19.5 269 49-350 223-523 (555)
256 PRK15331 chaperone protein Sic 73.4 11 0.00023 41.5 7.4 83 1211-1323 39-134 (165)
257 KOG0266 WD40 repeat-containing 73.1 80 0.0017 39.8 16.1 163 47-231 267-442 (456)
258 PF13431 TPR_17: Tetratricopep 72.8 2.7 5.9E-05 33.9 2.2 32 1107-1140 3-34 (34)
259 KOG2106 Uncharacterized conser 72.7 96 0.0021 39.4 15.8 111 91-216 179-295 (626)
260 PF12816 Vps8: Golgi CORVET co 72.6 32 0.0007 38.7 11.3 141 723-879 6-155 (196)
261 PRK04792 tolB translocation pr 71.9 2.3E+02 0.005 35.7 19.7 134 34-176 228-369 (448)
262 KOG2111 Uncharacterized conser 71.7 1.6E+02 0.0034 35.7 16.7 212 92-344 26-257 (346)
263 KOG1127 TPR repeat-containing 71.6 4.1E+02 0.0089 36.9 31.0 51 657-707 63-123 (1238)
264 PRK10803 tol-pal system protei 71.6 20 0.00044 42.0 9.8 49 1213-1261 184-243 (263)
265 PF13371 TPR_9: Tetratricopept 71.2 7.6 0.00017 35.3 5.0 46 1216-1261 2-55 (73)
266 PF13371 TPR_9: Tetratricopept 71.2 9 0.0002 34.8 5.5 53 1084-1145 3-55 (73)
267 PRK04043 tolB translocation pr 70.7 2.2E+02 0.0047 35.8 19.0 174 49-249 214-401 (419)
268 PF13181 TPR_8: Tetratricopept 70.7 5.6 0.00012 31.0 3.5 26 1120-1145 2-27 (34)
269 KOG3081 Vesicle coat complex C 70.3 1.2E+02 0.0026 36.1 15.1 177 1117-1321 39-234 (299)
270 KOG1156 N-terminal acetyltrans 69.4 3.7E+02 0.0081 35.5 20.9 97 1162-1260 21-134 (700)
271 PF13176 TPR_7: Tetratricopept 69.3 3.7 8.1E-05 33.2 2.3 28 1297-1324 2-29 (36)
272 PF10282 Lactonase: Lactonase, 69.2 2.6E+02 0.0057 33.7 18.8 193 91-314 12-237 (345)
273 KOG0299 U3 snoRNP-associated p 69.1 1.2E+02 0.0026 38.1 15.6 196 74-303 211-412 (479)
274 COG4235 Cytochrome c biogenesi 68.7 19 0.00041 42.8 8.6 97 1112-1234 149-252 (287)
275 PF04097 Nic96: Nup93/Nic96; 68.6 1.3E+02 0.0028 39.6 17.1 159 1236-1395 325-531 (613)
276 PF06433 Me-amine-dh_H: Methyl 68.6 19 0.00042 43.7 8.8 217 29-306 98-325 (342)
277 PF12688 TPR_5: Tetratrico pep 68.0 22 0.00048 37.0 8.1 84 1213-1321 5-102 (120)
278 PF03178 CPSF_A: CPSF A subuni 66.8 1.8E+02 0.0039 34.6 16.6 187 93-345 3-204 (321)
279 PLN03098 LPA1 LOW PSII ACCUMUL 66.6 10 0.00023 47.4 6.3 67 1048-1145 69-138 (453)
280 KOG0274 Cdc4 and related F-box 65.3 3.2E+02 0.0069 35.7 19.2 180 91-315 310-495 (537)
281 PF00515 TPR_1: Tetratricopept 65.2 9 0.00019 29.9 3.6 24 1238-1261 4-27 (34)
282 KOG2096 WD40 repeat protein [G 64.9 1.9E+02 0.0042 35.0 15.5 248 47-323 107-383 (420)
283 COG1747 Uncharacterized N-term 64.6 1.3E+02 0.0028 38.6 14.6 213 1237-1496 101-400 (711)
284 PRK04043 tolB translocation pr 64.4 3.7E+02 0.0081 33.7 21.5 194 77-314 155-367 (419)
285 KOG0307 Vesicle coat complex C 63.8 2.2E+02 0.0049 39.3 17.7 111 1187-1320 576-691 (1049)
286 KOG0295 WD40 repeat-containing 63.3 1.4E+02 0.003 36.8 14.2 233 70-332 113-393 (406)
287 PF08662 eIF2A: Eukaryotic tra 63.3 51 0.0011 36.7 10.4 111 12-127 40-159 (194)
288 PF12968 DUF3856: Domain of Un 62.3 38 0.00083 35.7 8.3 84 1212-1321 12-127 (144)
289 KOG2048 WD40 repeat protein [G 61.9 2.5E+02 0.0054 37.0 16.8 186 130-346 352-551 (691)
290 KOG3060 Uncharacterized conser 61.8 65 0.0014 37.9 10.9 154 1003-1175 35-218 (289)
291 PF07719 TPR_2: Tetratricopept 61.6 12 0.00025 29.0 3.6 24 1238-1261 4-27 (34)
292 PRK01029 tolB translocation pr 61.5 4.2E+02 0.0091 33.3 19.6 191 38-249 201-404 (428)
293 PF00930 DPPIV_N: Dipeptidyl p 60.5 3.7E+02 0.008 32.6 17.9 77 92-168 23-124 (353)
294 KOG0289 mRNA splicing factor [ 60.4 1.2E+02 0.0026 38.0 13.2 136 31-202 319-465 (506)
295 KOG0646 WD40 repeat protein [G 60.1 4.6E+02 0.01 33.3 20.0 217 46-305 15-251 (476)
296 PF10475 DUF2450: Protein of u 59.7 90 0.002 37.1 12.2 112 1186-1312 103-215 (291)
297 PF11768 DUF3312: Protein of u 59.5 4.4E+02 0.0096 34.3 18.4 69 272-342 260-328 (545)
298 KOG0771 Prolactin regulatory e 58.8 2.1E+02 0.0046 35.6 15.0 119 223-355 244-371 (398)
299 PF13428 TPR_14: Tetratricopep 58.3 9.9 0.00022 32.0 2.9 34 1296-1329 3-36 (44)
300 KOG2168 Cullins [Cell cycle co 57.0 49 0.0011 44.3 10.0 132 1047-1193 600-752 (835)
301 smart00564 PQQ beta-propeller 55.9 9.6 0.00021 29.7 2.3 25 283-307 6-30 (33)
302 PRK10153 DNA-binding transcrip 55.7 44 0.00096 43.0 9.3 66 1238-1329 423-488 (517)
303 KOG0292 Vesicle coat complex C 55.4 27 0.00058 46.6 7.1 82 1178-1262 643-725 (1202)
304 KOG0550 Molecular chaperone (D 55.4 5.4E+02 0.012 32.6 18.2 233 1216-1496 176-429 (486)
305 PF04841 Vps16_N: Vps16, N-ter 55.1 3.5E+02 0.0076 33.9 16.8 68 274-345 219-298 (410)
306 COG3386 Gluconolactonase [Carb 55.1 4.6E+02 0.01 31.8 18.2 230 92-346 47-301 (307)
307 KOG0264 Nucleosome remodeling 54.0 1.2E+02 0.0025 38.0 11.8 135 49-200 251-407 (422)
308 PF13181 TPR_8: Tetratricopept 53.6 20 0.00042 27.9 3.7 25 1238-1262 4-28 (34)
309 KOG0292 Vesicle coat complex C 53.2 21 0.00045 47.5 5.7 119 1047-1174 605-724 (1202)
310 COG1747 Uncharacterized N-term 52.8 6.4E+02 0.014 32.8 19.0 72 1297-1381 208-281 (711)
311 KOG0288 WD40 repeat protein Ti 52.0 33 0.00072 42.3 6.8 130 185-338 318-456 (459)
312 PF04841 Vps16_N: Vps16, N-ter 50.9 31 0.00068 42.9 6.8 70 272-344 81-156 (410)
313 PF01011 PQQ: PQQ enzyme repea 50.5 11 0.00025 30.9 2.0 30 284-313 1-30 (38)
314 PF04190 DUF410: Protein of un 50.5 1.2E+02 0.0027 35.5 11.2 67 1106-1172 73-145 (260)
315 KOG0642 Cell-cycle nuclear pro 50.4 1.3E+02 0.0029 38.6 11.8 178 157-348 335-566 (577)
316 cd00216 PQQ_DH Dehydrogenases 50.4 17 0.00038 46.0 4.6 56 283-338 301-379 (488)
317 KOG0543 FKBP-type peptidyl-pro 50.0 1.6E+02 0.0034 36.8 12.1 51 1186-1236 262-318 (397)
318 KOG1539 WD repeat protein [Gen 50.0 8.4E+02 0.018 33.3 20.0 241 16-353 27-285 (910)
319 KOG1174 Anaphase-promoting com 49.3 6.6E+02 0.014 31.9 21.8 166 1095-1264 306-500 (564)
320 PF14779 BBS1: Ciliary BBSome 48.8 25 0.00055 41.2 5.1 57 284-340 196-255 (257)
321 KOG4648 Uncharacterized conser 47.6 1.1E+02 0.0023 37.4 9.9 51 1211-1261 99-157 (536)
322 COG2319 FOG: WD40 repeat [Gene 47.5 4.6E+02 0.01 29.6 16.0 146 129-307 85-235 (466)
323 COG2909 MalT ATP-dependent tra 47.4 8.7E+02 0.019 33.5 18.8 86 1118-1203 346-437 (894)
324 KOG0772 Uncharacterized conser 47.3 2.3E+02 0.0049 36.4 12.9 203 72-302 275-488 (641)
325 smart00028 TPR Tetratricopepti 47.3 26 0.00055 24.7 3.3 25 1238-1262 4-28 (34)
326 KOG1273 WD40 repeat protein [G 47.0 33 0.00071 41.1 5.6 84 281-380 162-246 (405)
327 KOG1963 WD40 repeat protein [G 46.8 1.6E+02 0.0035 39.5 12.2 114 187-315 271-389 (792)
328 COG1729 Uncharacterized protei 46.5 72 0.0016 37.7 8.3 88 1078-1172 144-239 (262)
329 PF08662 eIF2A: Eukaryotic tra 46.5 2E+02 0.0043 32.1 11.6 116 67-198 5-134 (194)
330 KOG0315 G-protein beta subunit 46.4 2.6E+02 0.0056 33.1 12.3 140 47-207 104-257 (311)
331 KOG4121 Nuclear pore complex, 46.1 9.8E+02 0.021 33.5 18.9 295 1125-1477 778-1103(1128)
332 TIGR03300 assembly_YfgL outer 45.9 45 0.00097 40.3 7.0 31 283-313 65-95 (377)
333 smart00028 TPR Tetratricopepti 45.5 26 0.00056 24.7 3.1 27 1119-1145 1-27 (34)
334 PF14649 Spatacsin_C: Spatacsi 45.1 6.4E+02 0.014 30.5 18.7 80 999-1088 59-143 (296)
335 KOG1963 WD40 repeat protein [G 44.7 9E+02 0.019 33.0 18.2 64 289-352 475-539 (792)
336 PF03704 BTAD: Bacterial trans 44.5 53 0.0012 34.1 6.4 97 1159-1260 17-121 (146)
337 KOG2315 Predicted translation 44.3 1.3E+02 0.0027 38.8 10.3 114 30-150 275-401 (566)
338 PF09797 NatB_MDM20: N-acetylt 43.9 2.1E+02 0.0046 34.9 12.3 190 419-655 38-250 (365)
339 PF13934 ELYS: Nuclear pore co 43.8 2.8E+02 0.0061 32.0 12.5 65 1109-1173 66-133 (226)
340 KOG2168 Cullins [Cell cycle co 43.4 1.9E+02 0.0042 39.0 12.2 157 1297-1454 625-812 (835)
341 PF10367 Vps39_2: Vacuolar sor 43.4 43 0.00093 33.1 5.2 47 1435-1481 2-48 (109)
342 PF12931 Sec16_C: Sec23-bindin 43.3 70 0.0015 37.9 7.8 27 1211-1237 118-144 (284)
343 PF07575 Nucleopor_Nup85: Nup8 42.5 65 0.0014 41.8 8.0 87 1072-1158 368-464 (566)
344 PF02239 Cytochrom_D1: Cytochr 42.2 82 0.0018 38.8 8.4 83 222-321 4-86 (369)
345 KOG0265 U5 snRNP-specific prot 42.0 5.9E+02 0.013 31.0 14.5 161 49-232 70-247 (338)
346 PF11817 Foie-gras_1: Foie gra 40.9 2.3E+02 0.005 32.8 11.4 50 1213-1267 182-237 (247)
347 KOG2005 26S proteasome regulat 40.5 3.4E+02 0.0074 36.0 13.2 102 1004-1124 183-286 (878)
348 PRK10153 DNA-binding transcrip 40.4 2E+02 0.0043 37.3 11.7 50 1213-1262 424-480 (517)
349 PF13374 TPR_10: Tetratricopep 40.4 23 0.00051 28.3 2.4 30 1297-1326 5-34 (42)
350 PF10602 RPN7: 26S proteasome 40.0 77 0.0017 35.0 7.0 63 1115-1177 32-102 (177)
351 PF13360 PQQ_2: PQQ-like domai 39.9 27 0.00058 38.7 3.5 56 282-340 35-101 (238)
352 KOG1274 WD40 repeat protein [G 39.6 8.3E+02 0.018 33.6 16.8 137 129-308 33-175 (933)
353 PF08311 Mad3_BUB1_I: Mad3/BUB 39.3 68 0.0015 33.6 6.1 103 543-645 6-123 (126)
354 COG1729 Uncharacterized protei 38.9 1.3E+02 0.0027 35.7 8.7 48 1213-1260 182-240 (262)
355 COG5116 RPN2 26S proteasome re 38.9 2.8E+02 0.006 36.1 11.9 68 1401-1468 223-294 (926)
356 PF04762 IKI3: IKI3 family; I 38.6 1.3E+03 0.028 32.3 21.0 230 74-338 313-604 (928)
357 PF12894 Apc4_WD40: Anaphase-p 38.3 41 0.00088 29.6 3.6 31 276-307 16-46 (47)
358 PF11768 DUF3312: Protein of u 38.0 1.2E+02 0.0025 39.3 8.8 31 274-304 302-332 (545)
359 PRK11138 outer membrane biogen 37.4 55 0.0012 40.1 5.9 61 283-347 256-316 (394)
360 PF12726 SEN1_N: SEN1 N termin 36.9 3.1E+02 0.0068 36.8 13.2 65 609-700 501-580 (727)
361 KOG0279 G protein beta subunit 36.3 8.2E+02 0.018 29.6 14.5 214 91-350 84-310 (315)
362 KOG1710 MYND Zn-finger and ank 35.4 1.9E+02 0.0041 34.6 9.3 124 418-552 150-290 (396)
363 PF10395 Utp8: Utp8 family; I 35.2 3.5E+02 0.0075 36.1 12.6 70 222-300 85-158 (670)
364 KOG0551 Hsp90 co-chaperone CNS 35.2 77 0.0017 38.6 6.3 51 1212-1262 84-146 (390)
365 PF14974 DUF4511: Domain of un 35.2 1E+02 0.0023 31.7 6.4 33 712-744 53-89 (105)
366 KOG1941 Acetylcholine receptor 35.0 3.9E+02 0.0085 33.2 12.0 151 1187-1346 212-382 (518)
367 PF13374 TPR_10: Tetratricopep 34.9 51 0.0011 26.3 3.5 24 1238-1261 5-28 (42)
368 PF13174 TPR_6: Tetratricopept 34.9 49 0.0011 25.1 3.3 25 1120-1144 1-25 (33)
369 KOG1070 rRNA processing protei 34.5 1E+03 0.022 34.6 16.8 243 406-705 1439-1702(1710)
370 KOG1188 WD40 repeat protein [G 34.0 4.4E+02 0.0094 32.5 12.1 180 91-308 49-249 (376)
371 KOG0316 Conserved WD40 repeat- 33.9 5.9E+02 0.013 30.1 12.6 220 91-351 38-265 (307)
372 PF12862 Apc5: Anaphase-promot 33.9 1.5E+02 0.0032 29.1 7.3 28 1299-1326 46-73 (94)
373 KOG4649 PQQ (pyrrolo-quinoline 33.7 65 0.0014 38.0 5.2 67 278-345 100-167 (354)
374 KOG2062 26S proteasome regulat 33.4 2.8E+02 0.006 37.2 11.0 54 1223-1276 193-254 (929)
375 KOG0643 Translation initiation 33.4 6.6E+02 0.014 30.2 13.1 123 188-329 73-217 (327)
376 PF13174 TPR_6: Tetratricopept 33.4 48 0.001 25.2 3.0 23 1238-1260 3-25 (33)
377 KOG2377 Uncharacterized conser 33.2 88 0.0019 39.4 6.5 80 442-521 512-597 (657)
378 KOG4283 Transcription-coupled 32.6 9.9E+02 0.022 29.1 19.3 260 47-341 65-363 (397)
379 COG5071 RPN5 26S proteasome re 32.5 6.9E+02 0.015 30.5 13.2 117 1345-1509 95-223 (439)
380 PF10300 DUF3808: Protein of u 32.2 3.4E+02 0.0075 34.6 11.9 64 1207-1270 264-340 (468)
381 KOG0282 mRNA splicing factor [ 32.1 37 0.0008 42.5 3.2 98 240-353 237-340 (503)
382 COG5159 RPN6 26S proteasome re 32.0 4E+02 0.0087 32.2 11.1 189 625-848 7-211 (421)
383 PF13281 DUF4071: Domain of un 31.8 1E+03 0.022 29.8 15.3 25 1306-1330 238-263 (374)
384 KOG1188 WD40 repeat protein [G 31.5 1.4E+02 0.0029 36.5 7.5 82 240-332 50-135 (376)
385 PLN02919 haloacid dehalogenase 31.4 1.7E+03 0.038 31.6 22.0 35 271-306 803-838 (1057)
386 PF13512 TPR_18: Tetratricopep 30.6 90 0.002 33.7 5.4 51 1210-1260 11-72 (142)
387 KOG0307 Vesicle coat complex C 30.5 4.3E+02 0.0094 36.8 12.6 103 185-303 86-194 (1049)
388 COG5071 RPN5 26S proteasome re 30.5 1.1E+03 0.023 28.9 14.9 64 1032-1104 26-97 (439)
389 COG4235 Cytochrome c biogenesi 30.5 1.4E+02 0.0029 35.9 7.3 92 1234-1326 155-259 (287)
390 PF05804 KAP: Kinesin-associat 29.5 1.4E+03 0.031 30.9 17.1 229 486-752 349-605 (708)
391 PF04858 TH1: TH1 protein; In 29.3 1.5E+03 0.032 30.1 19.0 253 409-754 58-340 (584)
392 KOG1914 mRNA cleavage and poly 28.7 1.5E+03 0.032 29.9 23.8 343 955-1391 74-494 (656)
393 PF05131 Pep3_Vps18: Pep3/Vps1 28.7 1.3E+02 0.0029 32.5 6.4 80 288-400 40-129 (147)
394 COG0457 NrfG FOG: TPR repeat [ 28.5 6.2E+02 0.013 25.4 19.9 143 1119-1261 59-228 (291)
395 KOG0266 WD40 repeat-containing 28.4 1.3E+03 0.028 29.2 21.0 238 72-354 166-420 (456)
396 PF10191 COG7: Golgi complex c 28.2 5.1E+02 0.011 35.3 13.0 92 366-465 120-223 (766)
397 PF04190 DUF410: Protein of un 28.2 1E+03 0.023 27.9 15.2 35 1167-1201 69-110 (260)
398 PRK15331 chaperone protein Sic 28.1 5.5E+02 0.012 28.6 10.9 113 1095-1237 15-133 (165)
399 PF04124 Dor1: Dor1-like famil 28.0 8.7E+02 0.019 29.6 13.9 33 606-647 100-132 (338)
400 PF09205 DUF1955: Domain of un 27.8 8.3E+02 0.018 26.7 12.1 68 1186-1261 74-146 (161)
401 KOG0772 Uncharacterized conser 27.7 3.8E+02 0.0082 34.6 10.5 264 17-334 171-478 (641)
402 PF14583 Pectate_lyase22: Olig 27.2 1.8E+02 0.004 36.2 7.9 106 9-120 19-131 (386)
403 smart00036 CNH Domain found in 26.9 5.6E+02 0.012 30.7 11.8 28 124-151 15-43 (302)
404 PF13570 PQQ_3: PQQ-like domai 26.8 64 0.0014 26.6 2.9 20 283-302 21-40 (40)
405 KOG1445 Tumor-specific antigen 26.5 5.9E+02 0.013 33.7 11.9 276 6-336 529-835 (1012)
406 smart00777 Mad3_BUB1_I Mad3/BU 25.9 2.2E+02 0.0047 30.2 7.1 103 543-645 6-123 (125)
407 COG5110 RPN1 26S proteasome re 25.7 5.3E+02 0.012 33.6 11.3 91 1223-1326 242-332 (881)
408 KOG2062 26S proteasome regulat 25.7 9.4E+02 0.02 32.6 13.7 84 1405-1498 229-321 (929)
409 KOG4547 WD40 repeat-containing 25.5 1.6E+02 0.0035 37.9 7.1 95 186-306 77-177 (541)
410 PRK05560 DNA gyrase subunit A; 25.3 3.6E+02 0.0079 36.9 10.9 70 274-344 592-671 (805)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.2 51 0.0011 42.4 3.0 32 282-313 314-345 (527)
412 KOG4422 Uncharacterized conser 25.1 1.3E+03 0.028 29.7 14.1 210 351-613 365-584 (625)
413 PF01535 PPR: PPR repeat; Int 24.5 65 0.0014 24.1 2.3 24 741-764 2-25 (31)
414 KOG0263 Transcription initiati 24.5 7.6E+02 0.016 33.2 12.8 144 68-233 538-686 (707)
415 COG2976 Uncharacterized protei 24.4 6.4E+02 0.014 29.0 10.7 101 1198-1324 73-189 (207)
416 PF03704 BTAD: Bacterial trans 23.9 1.6E+02 0.0034 30.6 5.9 58 1238-1320 65-122 (146)
417 KOG0305 Anaphase promoting com 23.9 1.9E+02 0.004 37.2 7.3 74 119-209 185-261 (484)
418 KOG0306 WD40-repeat-containing 23.7 2E+03 0.043 29.8 20.8 67 271-337 412-478 (888)
419 COG1520 FOG: WD40-like repeat 23.6 1.5E+02 0.0032 36.1 6.4 65 283-347 111-175 (370)
420 PF12854 PPR_1: PPR repeat 23.5 91 0.002 25.1 3.1 27 738-764 6-32 (34)
421 COG2976 Uncharacterized protei 23.4 1.2E+03 0.026 27.0 14.1 159 1079-1262 11-186 (207)
422 cd02679 MIT_spastin MIT: domai 23.4 1.4E+02 0.0031 29.1 4.9 42 1068-1115 13-64 (79)
423 PF05843 Suf: Suppressor of fo 23.2 4.7E+02 0.01 30.9 10.2 132 573-797 17-152 (280)
424 PF10602 RPN7: 26S proteasome 23.1 4E+02 0.0087 29.5 9.0 52 1212-1263 39-101 (177)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 22.6 76 0.0017 40.9 3.8 34 279-312 468-501 (527)
426 cd09241 BRO1_ScRim20-like Prot 22.4 4.8E+02 0.01 32.1 10.3 135 998-1147 127-265 (355)
427 PHA02598 denA endonuclease II; 22.3 73 0.0016 34.1 2.9 48 288-341 2-49 (138)
428 KOG1036 Mitotic spindle checkp 22.1 3.2E+02 0.0068 33.1 8.2 80 261-346 6-86 (323)
429 KOG1587 Cytoplasmic dynein int 22.1 7.2E+02 0.016 32.7 12.2 57 132-203 223-279 (555)
430 KOG1272 WD40-repeat-containing 21.7 2.8E+02 0.0061 35.2 7.9 129 53-221 275-412 (545)
431 TIGR02923 AhaC ATP synthase A1 21.6 6.9E+02 0.015 29.9 11.4 104 1291-1394 28-138 (343)
432 TIGR01063 gyrA DNA gyrase, A s 21.5 5.3E+02 0.012 35.3 11.3 71 272-344 588-669 (800)
433 KOG4424 Predicted Rho/Rac guan 21.2 2.2E+02 0.0048 37.0 7.1 140 1315-1507 95-252 (623)
434 cd02681 MIT_calpain7_1 MIT: do 21.1 1.3E+02 0.0029 29.1 4.2 27 1070-1102 13-39 (76)
435 KOG0771 Prolactin regulatory e 20.8 3.6E+02 0.0078 33.7 8.5 76 240-330 166-260 (398)
436 PF10300 DUF3808: Protein of u 20.8 2.4E+02 0.0051 36.0 7.5 69 1242-1332 274-343 (468)
437 KOG0639 Transducin-like enhanc 20.5 4.3E+02 0.0092 34.0 9.1 111 49-177 488-612 (705)
438 PF02897 Peptidase_S9_N: Proly 20.3 1.6E+03 0.035 27.4 16.1 179 145-346 109-312 (414)
439 KOG0277 Peroxisomal targeting 20.3 9.7E+02 0.021 28.7 11.3 142 124-303 76-223 (311)
440 PF10493 Rod_C: Rough deal pro 20.2 7.9E+02 0.017 32.3 12.0 152 403-598 348-517 (551)
441 PF04212 MIT: MIT (microtubule 20.1 1.5E+02 0.0032 27.5 4.2 28 1068-1101 10-37 (69)
442 COG4946 Uncharacterized protei 20.0 3.6E+02 0.0078 34.4 8.3 149 186-347 243-435 (668)
443 PF12854 PPR_1: PPR repeat 20.0 1.4E+02 0.0031 24.0 3.5 25 1236-1260 8-32 (34)
No 1
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=0 Score=4366.97 Aligned_cols=1502 Identities=64% Similarity=1.027 Sum_probs=1494.1
Q ss_pred CCCCCceeeeecccCCCCCCCCcccccceeeecCeeEEEEecCCCC-eEEEEEcCCCCCccccccCcccccccCCcceee
Q 000428 3 AANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQN-SVVIIDMNQPMQPLRRPITADSALMNPNSRILA 81 (1520)
Q Consensus 3 ~~~~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~-~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~iiA 81 (1520)
++.+||+|+||+||+|+||+|++|+|.|+||||||||||||+.|++ |||||||++|.+|+||||+||||||||+++|||
T Consensus 1 a~~lPi~f~E~lqL~~~GI~~~~~~F~~~TmESDk~icvRe~~~~~~qVvIiDm~d~~~piRRpisadSaIm~P~kkvia 80 (1666)
T KOG0985|consen 1 AQILPIRFQEHLQLQNLGINPQNIGFSNVTMESDKFICVREKVGGQNQVVIIDMADPVNPIRRPISADSAIMNPDKKVIA 80 (1666)
T ss_pred CCCCCeeHHHHhcccccCcCccccccceeeeecCceEEEeccCCCcceEEEEEcCCCcccccCCCCCCchhhCchHHHHH
Confidence 3579999999999999999999999999999999999999999887 999999999999999999999999999999999
Q ss_pred eeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEE
Q 000428 82 LKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIIN 161 (1520)
Q Consensus 82 lra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~ 161 (1520)
||| |++|||||+|+|+|+|+|+|+|+|+||||||++|||+||+|+||||+++|+|+|+||||||++|+||||||
T Consensus 81 lka------~~~lQIFniE~KsK~ksh~m~E~VifWkWIs~kti~lVT~tsV~hws~egds~PvkmfdRh~sL~gcQiIn 154 (1666)
T KOG0985|consen 81 LKA------GKTLQIFNIERKSKSKAHTMDEDVIFWKWISDKTIALVTATSVYHWSKEGDSAPVKMFDRHRSLNGCQIIN 154 (1666)
T ss_pred Hhh------CCeEEEEehhhhhhhccCCCCCceEEEEecchhHHHHhhhhheeeecccccchHHHHHHhhhccccceEEE
Confidence 996 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccce
Q 000428 162 YKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSK 241 (1520)
Q Consensus 162 Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~k 241 (1520)
|++|...+|++|+||+ +++++|+|+|||||++|++||+|||||++|+.++++|+..|+++|||++|+++| ||
T Consensus 155 yk~~~~~eWl~LVGIs----~r~~rv~G~MQLyS~~rkvSQ~iegHaa~Fa~fk~egne~p~~lF~fa~r~~~~----Gk 226 (1666)
T KOG0985|consen 155 YKGNLNAEWLALVGIS----ARTNRVAGKMQLYSVDRKVSQPIEGHAASFAAFKDEGNEVPSCLFSFAVRKPTG----GK 226 (1666)
T ss_pred eccccccCceeEEeee----cccchhheeeeeeeeccchhhhhHHHHHHHHHhcccCCCCceEEEEecCCCCCC----Ce
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999998 89
Q ss_pred EEEEecCCCC-CCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEee
Q 000428 242 LHVIELGAQP-GKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTS 320 (1520)
Q Consensus 242 L~i~Ei~~~~-~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~ 320 (1520)
|||+|+|+++ |+++|+||++|+|||||+++||||+||||.|||+||+|||+||+|+||+|||+||||||||+++||+|+
T Consensus 227 LhiiEvg~~~tg~~~f~kk~vDvffppda~nDFPvamqvs~k~~vIyLiTKyG~ihlYdlEt~tciy~NRIs~dtIFvta 306 (1666)
T KOG0985|consen 227 LHIIEVGDPPTGNMPFLKKKVDVFFPPDAINDFPVAMQVSAKYGVIYLITKYGYIHLYDLETGTCIYRNRISADTIFVTA 306 (1666)
T ss_pred eEEEecCCCccCCCcchhhhhhccCChhhccccchheeeccccCeEEEEeecchhhhhhhhhhhhhhhhhccccceeEec
Confidence 9999999987 666999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEcCCCcEEEEEeecCccccchhcccCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcccCHHHHHHHHHcC
Q 000428 321 EASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES 400 (1520)
Q Consensus 321 ~~~~~~Gi~~Vn~~GqVl~v~i~~~~ivpyi~~~l~n~~la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~s 400 (1520)
+++.++||++|||+|||++|+|++++|||||.++|+||+||+++|+|+||||||+||++|||+||++|+|++||++||+|
T Consensus 307 ~~~~s~Gi~~iNrKGQVLsv~v~e~~IVpyi~~~LqnpeLal~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsS 386 (1666)
T KOG0985|consen 307 PHDSSSGIQGINRKGQVLSVLVNEQNIVPYITNVLQNPELALRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASS 386 (1666)
T ss_pred ccccCcchhhhhhcceEEEEEecCcceehhhhccccChHHHHHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCCCChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhh
Q 000428 401 PQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV 480 (1520)
Q Consensus 401 P~g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Yf~~ll~~g~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~ 480 (1520)
|+||||||+||+|||++|++||||||||||||+||++|+||++||+|||||||+|||++|+||||+|+||+|||||||++
T Consensus 387 PrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlV 466 (1666)
T KOG0985|consen 387 PRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV 466 (1666)
T ss_pred chhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChhhHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCH
Q 000428 481 KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDY 560 (1520)
Q Consensus 481 ~~~D~~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv 560 (1520)
+++|++||+++|.||+||.|||.|++|.|+|+||+.|++|+||||||+++|++++|+||+++.+||.+++|.++ |+.|+
T Consensus 467 K~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~-~~~di 545 (1666)
T KOG0985|consen 467 KPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEE-PLADI 545 (1666)
T ss_pred ccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHccChhHHHHHHHHhhccCC-CcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876 89999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHH
Q 000428 561 NTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRA 640 (1520)
Q Consensus 561 ~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~A 640 (1520)
++|+|+||+.|++|++|+||+|+||+|+|++|+|||||||+|++++|+|||+||+|+||+||||++||+|||+|||+|||
T Consensus 546 e~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qra 625 (1666)
T KOG0985|consen 546 EQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRA 625 (1666)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcchhHHhhccccCChhhHHHHhhcCChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhc
Q 000428 641 LQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFK 720 (1520)
Q Consensus 641 le~Y~~~~dikR~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~ 720 (1520)
||||+|+.||||+++||+.++|+||+.|||+|+++||+|||++||.+|+|||+|+|||+|+|||+++|+++||++||+||
T Consensus 626 LehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fk 705 (1666)
T KOG0985|consen 626 LEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFK 705 (1666)
T ss_pred HHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhhcccCCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCChhh
Q 000428 721 SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPD 800 (1520)
Q Consensus 721 ~~e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~ 800 (1520)
|||||||||||+||+|+||+||||||+|+||+||++|||||||||||||||||||||||+||+||+|||+||||||||||
T Consensus 706 s~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhd 785 (1666)
T KOG0985|consen 706 SYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHD 785 (1666)
T ss_pred cchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcchhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHh
Q 000428 801 LTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLV 880 (1520)
Q Consensus 801 L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l 880 (1520)
|++|||+|++++|||.|||+|||+|+|.|||+|+|+||+|++|++|+++|+|+.|++|||+|||||||||+|+||||+++
T Consensus 786 lvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 786 LVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHhcCCChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHH
Q 000428 881 SEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY 960 (1520)
Q Consensus 881 ~eg~~d~~l~~alakiyid~~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~y 960 (1520)
++|.+|+++||||||||||||+|||+||++|+||||++||||||||||+|||++|.+|+||.+||++||+|+|||.+|||
T Consensus 866 ~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRY 945 (1666)
T KOG0985|consen 866 QEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARY 945 (1666)
T ss_pred hccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHhcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhh
Q 000428 961 VVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQN 1040 (1520)
Q Consensus 961 lvk~~~~~lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~Lqn 1040 (1520)
||+|+|++||.+||+++|+|||+|||||++||+||++|||+||.||||||++|||+|||||||||||+||.||+|.||||
T Consensus 946 lv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 946 LVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred HHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChh
Q 000428 1041 LLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDA 1120 (1520)
Q Consensus 1041 LlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~e 1120 (1520)
||||||||+|++|||+||+|+||||+++||.+|++++||||||.||+||+.+.+|++||++|++++|||.+||++|++|+
T Consensus 1026 LLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~ 1105 (1666)
T KOG0985|consen 1026 LLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPA 1105 (1666)
T ss_pred hHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhH
Q 000428 1121 VWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDI 1200 (1520)
Q Consensus 1121 Vw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~el 1200 (1520)
|||++|+|||++|+++|||+|||||+||++|.+||..|.++|+||+||+||+||||+.++|+||++|+++|||++|+.++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhh
Q 000428 1201 EEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEF 1280 (1520)
Q Consensus 1201 e~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~ 1280 (1520)
|+||.++|+|+++.|||+||++|+|+|||.+|++++||++||+|+|+||+||+|||+|||||+++|||+||+||+|++||
T Consensus 1186 E~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1186 EEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchH
Q 000428 1281 RLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIP 1360 (1520)
Q Consensus 1281 rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~ 1360 (1520)
||||+|||+|++|+|+|++|++||+++|+|+|+|+|||.|+||||||||||||||||||||+|+|||||||+||+|+|||
T Consensus 1266 rlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNip 1345 (1666)
T KOG0985|consen 1266 RLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIP 1345 (1666)
T ss_pred hHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCcchHHHHHHHH
Q 000428 1361 KLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL 1440 (1520)
Q Consensus 1361 K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~l 1440 (1520)
|+||+|+++|+|.|+||||.+|+|||||+.+||+||++||+|++||||++||+|+|+||||++|||++||.+++|||.+|
T Consensus 1346 KviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL~vL 1425 (1666)
T KOG0985|consen 1346 KVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLLTVL 1425 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHhcCCccchHHHHHHHhhcChHHHHHHHHHHhhhhhhhHHHHHhHHhhhCCChHHHHHHhhcCCCC
Q 000428 1441 ALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFW 1519 (1520)
Q Consensus 1441 ~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal~~l~ieeed~~~Lr~sId~y~nfd~~~la~~le~h~l~ 1519 (1520)
+||+||+|+|++|+|++++|||||||.+||++|+++||+|+|+||||||||++||+|||.|||||+|+||||||||+|+
T Consensus 1426 ~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~~Nn~avNealn~l~ieeEDy~~Lr~sid~~D~FD~i~LAq~lEkH~L~ 1504 (1666)
T KOG0985|consen 1426 SPRLDHTRTVSIFSKAGQLPLIKPYLRAVQSLNNKAVNEALNDLLIEEEDYQGLRDSIDAYDNFDNIGLAQRLEKHELV 1504 (1666)
T ss_pred ccccCchHHHHHHHhcCCCcccHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhhhhcchhHHHHHHHhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-113 Score=1029.03 Aligned_cols=765 Identities=20% Similarity=0.248 Sum_probs=697.0
Q ss_pred CCCcEEEEEeecCccccchhcc-----------------cCCHHHHHHHHHhcC-CCCchHH--HHHHHHH---------
Q 000428 333 RRGQVLLATVNEATIVPFVSGQ-----------------LNNLELAVNLAKRGN-LPGAENL--VVQRFQE--------- 383 (1520)
Q Consensus 333 ~~GqVl~v~i~~~~ivpyi~~~-----------------l~n~~la~~la~r~~-lpgad~l--~~~~F~~--------- 383 (1520)
++-+|..-.++++-+|.|...- -+|.++.+.+|++|- +=|++.+ .-++|+.
T Consensus 636 KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLg 715 (1666)
T KOG0985|consen 636 KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLG 715 (1666)
T ss_pred HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHH
Confidence 4456777788999999887651 157889999999985 6678776 3334432
Q ss_pred ------------------HHcccCHHHHHHHHHcCCC-------------------------------------------
Q 000428 384 ------------------LFAQTKYKEAAELAAESPQ------------------------------------------- 402 (1520)
Q Consensus 384 ------------------l~~~g~y~~AA~~AA~sP~------------------------------------------- 402 (1520)
--..||++|--+++-.|--
T Consensus 716 Sivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~ 795 (1666)
T KOG0985|consen 716 SIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 795 (1666)
T ss_pred HHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhH
Confidence 1245788888888876632
Q ss_pred -----------CCCCCHHHHHHHhcC-----------CCCCCCCC---------------cHHHHHHHHhhcCCCChhhh
Q 000428 403 -----------GLLRTPDTVAKFQSV-----------PVQAGQTP---------------PLLQYFGTLLTRGKLNAFES 445 (1520)
Q Consensus 403 -----------g~LRt~~Ti~rfk~~-----------~~~~Gq~~---------------pLL~Yf~~ll~~g~ln~~es 445 (1520)
+-=|||..+-.+-.+ -...||-| -||||+|.++++|..+++.+
T Consensus 796 ~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~h 875 (1666)
T KOG0985|consen 796 QKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQDPATH 875 (1666)
T ss_pred HHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHH
Confidence 222444444333222 12234443 37999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhccChhhHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHHhCCch
Q 000428 446 LELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTP 525 (1520)
Q Consensus 446 lEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~~D~~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~ 525 (1520)
+.|+|++++.|.. .|+||+||.+|+|.++|+||+++||+||+.+|.||+||.++|++++||++|+.++||+++|.+.+
T Consensus 876 nAlaKIyIDSNNn--PE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~ 953 (1666)
T KOG0985|consen 876 NALAKIYIDSNNN--PERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPD 953 (1666)
T ss_pred hhhhheeecCCCC--hHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChH
Confidence 9999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHhc---CCCCCCCHHHHHHHHHhCCcHHHHHHHHHHhhcCCCC--CCchhhhHHHH
Q 000428 526 DYLFLLQTILRTDPQGAVNFALMMSQM---EGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLP--EHGFLQTKVLE 600 (1520)
Q Consensus 526 d~~~lL~~~~~~np~~~~~la~~l~~~---e~~~~~dv~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~--e~~~LQt~Lle 600 (1520)
+|..||.. +||+| ++|++|++++ |+.+|.+||.+|++||.+++|.|+|++||+|+++||+ +|.+|||+||+
T Consensus 954 LW~~VL~e---~n~~r-RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL 1029 (1666)
T KOG0985|consen 954 LWAKVLNE---ENPYR-RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL 1029 (1666)
T ss_pred HHHHHHhc---cChHH-HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH
Confidence 99999988 59996 9999999999 7889999999999999999999999999999999999 99999999999
Q ss_pred hhhccCc-hhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcC--------------CCcchhHHhhccccCChhhH
Q 000428 601 INLVTFP-NVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYT--------------ELPDIKRVIVNTHAIEPQSL 665 (1520)
Q Consensus 601 ~nl~~~p-~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~--------------~~~dikR~~~~~~~~~~~~l 665 (1520)
|+||+|| |||||| ++|++||.|+||++|..++||||||+||+ ++.+++|+..++.+++.+.+
T Consensus 1030 tAikad~trVm~YI---~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~v 1106 (1666)
T KOG0985|consen 1030 TAIKADRTRVMEYI---NRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAV 1106 (1666)
T ss_pred HHhhcChHHHHHHH---HHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHH
Confidence 9999997 999999 99999999999999999999999999998 45579999999999999999
Q ss_pred HHHhhc--CChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhccchhHHHHHhhhcccCCCChhHH
Q 000428 666 VEFFGT--LSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHF 743 (1520)
Q Consensus 666 ~~~~~~--l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~dp~V~~ 743 (1520)
|+.+++ |....+-|+++++||+.+++|+..||++| ++.+.||+|+.||.|+|++.++|.|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a----------------~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVA----------------SRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHH----------------HhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 999999 88888999999999999999999996666 889999999999999999999999999
Q ss_pred HHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCChhhhhHHhhcchhHHHHHHHhhhcCC
Q 000428 744 KYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNP 823 (1520)
Q Consensus 744 kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~yLy~~~~~~~Ie~Yv~~vnp 823 (1520)
++|.|+||+|++.|+|.|+.+||++|.+.|||+|++.|+||+++|+| ...+||. +|+++| +|++.|+.+||.
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y-~~vSN~a-~La~TL------V~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY-SNVSNFA-KLASTL------VYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH-HHhhhHH-HHHHHH------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999 699996 999999999999
Q ss_pred CChhH-------HHHHHhhCCCChhHHHHH--HHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHhhcCCcchHHHHHHH
Q 000428 824 GNAPL-------VVGQLLDDECPEDFIKGL--ILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALG 894 (1520)
Q Consensus 824 a~~~~-------Vv~~lld~~~~E~~i~~L--L~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l~eg~~d~~l~~ala 894 (1520)
||++. |+.+|+|. .|++++++ |+.|+|+++++||++.|+.||+|.+|+++||++++.+++|||+||+||
T Consensus 1243 aRKAns~ktWK~VcfaCvd~--~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVCFACVDK--EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred hhhccchhHHHHHHHHHhch--hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 98654 88999987 99999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhhhhcCCCCChHH----HHHHHhhcC--CceEEEEeecccchHH---Hh---hhcccchHHHHHHHHHH
Q 000428 895 KIIIDSNNNPEHFLTTNPYYDSRV----VGKYCEKRD--PTLAVVAYRRGQCDDE---LI---NVTNKNSLFKLQARYVV 962 (1520)
Q Consensus 895 kiyid~~~~pE~fL~~n~~yd~~v----Vgk~Ce~~d--p~la~l~y~~g~~d~~---LI---~v~~~n~~fk~~a~ylv 962 (1520)
++| |++.|||.++|.++||||+ |.|.||..+ .+|+|+|-++.++|++ |+ .-+|+|+.||++ ++
T Consensus 1321 iLY--skykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdi---i~ 1395 (1666)
T KOG0985|consen 1321 ILY--SKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDI---IT 1395 (1666)
T ss_pred HHH--HhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHH---HH
Confidence 999 9999999999999999999 999999998 5999999999999998 44 458999999999 99
Q ss_pred HcCCHHHHHHHhc---CcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhC-CCC---HHHHHHHHHhhhcCCCcccc
Q 000428 963 ERMDADLWEKVLT---PENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTA-DLP---HELIELLEKIVLQNSAFSGN 1035 (1520)
Q Consensus 963 k~~~~~lw~~vl~---~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a-~lp---~eLi~lLekivl~~~~fs~N 1035 (1520)
|+.|.||+++++. +.+| .|+++++.++.|+. |++++|+.|..+ ++| ++|++++.. ++ -++|
T Consensus 1396 kVaNvElyYkAi~FYl~~~P---~llnDlL~vL~pRl----Dh~r~v~~f~K~~~lpLikpyl~~vq~~---Nn--~avN 1463 (1666)
T KOG0985|consen 1396 KVANVELYYKAIQFYLDFHP---LLLNDLLTVLSPRL----DHTRTVSIFSKAGQLPLIKPYLRAVQSL---NN--KAVN 1463 (1666)
T ss_pred HHhhHHHHHHHHHHHHHhCh---HHHHHHHHhccccc----CchHHHHHHHhcCCCcccHHHHHHHHhc---ch--HHHH
Confidence 9999999999998 7777 47789999999998 999999999965 588 788877765 54 8899
Q ss_pred chhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHH---HHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHH
Q 000428 1036 FNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE---EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEF 1112 (1520)
Q Consensus 1036 ~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~E---EA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~ 1112 (1520)
++|++|+| .++|+..|+++|+.+||||...+|+..++|.|.| .|..|||++++|.+++.+++++. .|++|+++
T Consensus 1464 ealn~l~i---eeEDy~~Lr~sid~~D~FD~i~LAq~lEkH~L~efrriaAylyk~n~rW~qSiel~Kkd~-lyKDame~ 1539 (1666)
T KOG0985|consen 1464 EALNDLLI---EEEDYQGLRDSIDAYDNFDNIGLAQRLEKHELVEFRRIAAYLYKGNNRWKQSIELCKKDK-LYKDAMET 1539 (1666)
T ss_pred HHHHHHhh---hHHHHHHHHHhhhhhcchhHHHHHHHhhhhhhHHHHHHHHHHHhccchHHHHHHHhhhhh-HHHHHHHH
Confidence 99999999 9999999999999999999999999999999999 99999999999999999999986 89999999
Q ss_pred HHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhH
Q 000428 1113 AFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHD 1166 (1520)
Q Consensus 1113 Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~ 1166 (1520)
|..+.++++ .++.+.+|++.++.+||++|+++||+.=.|+-
T Consensus 1540 Aa~S~~~~l-------------ae~Ll~~F~e~g~~ecFaa~Ly~cYdLlrpd~ 1580 (1666)
T KOG0985|consen 1540 AAESRDTEL-------------AEELLQYFLEEGKRECFAACLYTCYDLLRPDV 1580 (1666)
T ss_pred HHhcCChHH-------------HHHHHHHHHHhccHHHHHHHHHHHHHhcChHH
Confidence 999999999 99999999999999999999999998755543
No 3
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.6e-31 Score=313.85 Aligned_cols=392 Identities=18% Similarity=0.239 Sum_probs=344.2
Q ss_pred ChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHH---HhCChhHHHHHHHHHHhhccHHHHHHH
Q 000428 1065 DGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAF---RVEEDAVWSQVAKAQLREGLVSDAIES 1141 (1520)
Q Consensus 1065 d~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Ae---k~~~~eVw~~lgka~l~~~~v~eAI~~ 1141 (1520)
|-.++|-+|++.|+.|||..||+++++|| -+|-+.+..+.|+.|.++|+ +++....||+.|+.....++++-||++
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D-LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD-LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 45678999999999999999999999999 88999999999999999999 689999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHH-HHHhhhh
Q 000428 1142 FIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQ-NVGDRLY 1220 (1520)
Q Consensus 1142 Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~-~vgd~~~ 1220 (1520)
|.|+++|-. +|.++.. +.|..+-.|.+. .+|| .+. =||..+.
T Consensus 881 yEK~~~haf--ev~rmL~--e~p~~~e~Yv~~----~~d~-----------------------------~L~~WWgqYlE 923 (1416)
T KOG3617|consen 881 YEKAGVHAF--EVFRMLK--EYPKQIEQYVRR----KRDE-----------------------------SLYSWWGQYLE 923 (1416)
T ss_pred HHhcCChHH--HHHHHHH--hChHHHHHHHHh----ccch-----------------------------HHHHHHHHHHh
Confidence 999999654 7777766 556666666652 3333 333 3777788
Q ss_pred ccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHH--------------HH---HHHhcchhhhHH
Q 000428 1221 DDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKE--------------VC---FACVDAEEFRLA 1283 (1520)
Q Consensus 1221 eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~--------------v~---~acv~~~e~rLA 1283 (1520)
+.|++++|..+|++..+|..+++++|.+|+.++|..+|+++++....+- |+ .|-.=++.+||+
T Consensus 924 S~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred cccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998876652 22 244446778888
Q ss_pred Hhhccc-------cccccccHHHHHHHHHhcC-CHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHH
Q 000428 1284 QICGLN-------IIVQVDDLEEVSEYYQNRG-YFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFST 1355 (1520)
Q Consensus 1284 ~~~gl~-------li~~~d~l~elv~~Ye~~G-~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~ 1355 (1520)
++.++. +...++++-+..+|||+.| +++.|+.||.+++-+.+| .|||+ ...-++.|.+..+
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kA-----LelAF------~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKA-----LELAF------RTQQFSALDLIAK 1072 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHH-----HHHHH------hhcccHHHHHHHH
Confidence 877766 7888999999999999999 999999999999877777 88888 6777888889888
Q ss_pred hh---chHHHHHHHH----hhcchHHHHHHHHhhccHHHHHHHHHhc-------------C--chhhcchhhHHHHHhhh
Q 000428 1356 RL---NIPKLIRACD----EQQHWKELTYLYIQYDEFDNAATTIMNH-------------S--PEAWDHMQFKDVAVKVA 1413 (1520)
Q Consensus 1356 ~i---Ni~K~i~~ce----~~~lW~E~vfLy~~~~e~d~A~~~mi~h-------------~--~~a~~h~~fk~ii~kva 1413 (1520)
-+ ..||+|+.|. +.+++..+|-|++...+|..|+.+|-++ | .+-+.....+++++.++
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 77 6899999998 4999999999999999999999999887 1 23477888999999998
Q ss_pred hhHHHHHHHHHHHhhCc-chHHHH---HHHHhhcCCHHHHHHHHHhcCC---ccchHHHHHHHhhcChHHHHHHHHHHhh
Q 000428 1414 NVELYYKAVHFYLQEHP-DLINDL---LNVLALRVDHTRVVDIMRKAGH---LLLVKPYMVAVQSNNVSAVNEALNEIYV 1486 (1520)
Q Consensus 1414 n~elyYkai~FyL~~~P-~~l~dl---L~~l~~rlD~~rvV~~~~k~~~---ipLik~yL~~vq~~n~~~Vneal~~l~i 1486 (1520)
. ++-++++|-...+. ++.+|. |+.|.+.+|..|++.+++.+++ |.++.+|||+.+|+.++++++.|..||.
T Consensus 1153 e--~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYT 1230 (1416)
T KOG3617|consen 1153 E--LCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYT 1230 (1416)
T ss_pred H--HHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhh
Confidence 6 99999999998888 999998 6678899999999999999988 9999999999999999999999999999
Q ss_pred hhhhhHHHHH--------hHHhhhCCChH
Q 000428 1487 EEEDYERLRE--------SIDMHDNFDQI 1507 (1520)
Q Consensus 1487 eeed~~~Lr~--------sId~y~nfd~~ 1507 (1520)
+...|+.|.. +||+|+|||+.
T Consensus 1231 Kgqafd~LanFY~~cAqiEiee~q~ydKa 1259 (1416)
T KOG3617|consen 1231 KGQAFDHLANFYKSCAQIEIEELQTYDKA 1259 (1416)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 9999999998 89999999985
No 4
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=99.95 E-value=8.7e-29 Score=222.67 Aligned_cols=66 Identities=62% Similarity=1.107 Sum_probs=56.3
Q ss_pred CCCCchHHHHHHHHHHHcccCHHHHHHHHHcCCCCCCCCHHHHHHHhcCCCCCCCCCcHHHHHHHH
Q 000428 369 NLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTL 434 (1520)
Q Consensus 369 ~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~sP~g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Yf~~l 434 (1520)
||||||+||++|||+||++|+|++||++||+||+|+||||+||+|||++|++|||+||||+||++|
T Consensus 1 ~lpGad~l~~~~F~~l~~~g~y~eAA~~AA~sP~giLRt~~Ti~rFk~~p~~pGq~splL~YF~~L 66 (66)
T PF13838_consen 1 NLPGADDLYVQQFNELFSQGQYEEAAKVAANSPRGILRTPETINRFKQVPAQPGQPSPLLQYFGAL 66 (66)
T ss_dssp T-SS-HHHHHHHHHHHHHTT-HHHHHHHHHHSGGGTT-SHHHHHHHHTS---TTS--HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccchhcCHHHHHHHHcCCCCCCCCCHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999999999986
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=7.4e-14 Score=177.66 Aligned_cols=803 Identities=16% Similarity=0.106 Sum_probs=397.4
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcccCHHHHHHHHHcCCCCCCCCHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCC
Q 000428 360 LAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGK 439 (1520)
Q Consensus 360 la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~sP~g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Yf~~ll~~g~ 439 (1520)
+++.++.. |=| ..+-...+-..++.+|+|.+|......+=+--=.+++--...-.+--..|+...-+.+|...++.++
T Consensus 10 ~~~~~~~~-~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 87 (899)
T TIGR02917 10 IALALSAC-GDQ-SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY 87 (899)
T ss_pred HHHHHHhc-CCC-CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44555553 334 3333556688999999999999887765211011222222222222334666777778888888877
Q ss_pred CChhhhHHHHHHHHhhcchhhHHHHHhhccccc-------chhhhhhh-hccChhhHHHHHHhcC--------CCHHHHH
Q 000428 440 LNAFESLELSRLVVNQNKKNLLENWLAEDKLEC-------SEELGDLV-KTVDNDLALKIYIKAR--------ATPKVVA 503 (1520)
Q Consensus 440 ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~-------Se~lGD~~-~~~D~~LA~~iY~r~~--------~~~KvI~ 503 (1520)
.+..-...++++...+|+.+-....+.+-.... -..+|... ...++.-|...|.++- +.-..+.
T Consensus 88 ~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 167 (899)
T TIGR02917 88 PKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQ 167 (899)
T ss_pred ChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 777777778888888887766655554322111 11122221 1224444444444420 1112333
Q ss_pred HHHHhccHHHHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCcHHHHHHHHHHh
Q 000428 504 AFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDV 583 (1520)
Q Consensus 504 ~~~e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv~~vv~~F~~~~l~~e~t~~Ll~~ 583 (1520)
++.+.|++++...++.+ +....+..+.-......+++..|...++...+.++
T Consensus 168 ~~~~~~~~~~A~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 219 (899)
T TIGR02917 168 LALAENRFDEARALIDE----------------------------VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKA 219 (899)
T ss_pred HHHHCCCHHHHHHHHHH----------------------------HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444444444444443 33322111111222333444444455555554444
Q ss_pred hcCCCCCCchhhhHHHHhhhccC--c---hhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcCCCcchhHHhhccc
Q 000428 584 LKPNLPEHGFLQTKVLEINLVTF--P---NVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTH 658 (1520)
Q Consensus 584 lk~n~~e~~~LQt~Lle~nl~~~--p---~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~~~~dikR~~~~~~ 658 (1520)
+.. .|++......+..+-+... . +..+.++....-+-.-.-..|.+....|-|++|++.|.+.- ....
T Consensus 220 ~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l------~~~~ 292 (899)
T TIGR02917 220 IAL-RPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL------KSAP 292 (899)
T ss_pred Hhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH------HhCC
Confidence 432 2222222222222221111 0 11111111000000001122444556777888888774221 1111
Q ss_pred c-CChhh--HHHHhhcCChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhccchhHHHHHhhhcc-
Q 000428 659 A-IEPQS--LVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLS- 734 (1520)
Q Consensus 659 ~-~~~~~--l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~- 734 (1520)
. .+.-+ -.-++..-..+.+..+++..++.+ +.+...... +..++.+.|.++.-...+..+..
T Consensus 293 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~~~~~ 358 (899)
T TIGR02917 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRL-------------LASIQLRLGRVDEAIATLSPALGL 358 (899)
T ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH-------------HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 11000 112333345577777777777654 333322222 22333444554444444444333
Q ss_pred cCCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCChhhhhHHh-hcchhHHH
Q 000428 735 SSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYL-YTNNMLRY 813 (1520)
Q Consensus 735 ~~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~yL-y~~~~~~~ 813 (1520)
...++.+++.++.++.+.|++.+..+..+..--.+|+...- +. .++..+ ......+.
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------~~-~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA---------------------RT-QLGISKLSQGDPSEA 416 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH---------------------HH-HHHHHHHhCCChHHH
Confidence 23567788888888888888877666655432222211100 00 111111 11222334
Q ss_pred HHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHhhcCCcchHHHHHH
Q 000428 814 IEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNAL 893 (1520)
Q Consensus 814 Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l~eg~~d~~l~~al 893 (1520)
++.|.+++. .+...... .-.++..+-+.|+++.-+..++..+.....++.+++.+
T Consensus 417 ~~~~~~a~~-------------~~~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 471 (899)
T TIGR02917 417 IADLETAAQ-------------LDPELGRA------------DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLL 471 (899)
T ss_pred HHHHHHHHh-------------hCCcchhh------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 444433321 11100000 01234455667777777788887777766777888888
Q ss_pred HHHHHhcCCChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHHHHHcCCHHHHHHH
Q 000428 894 GKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKV 973 (1520)
Q Consensus 894 akiyid~~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~ylvk~~~~~lw~~v 973 (1520)
|.+|...+. +++=... | +-.-+.+|.- ...+-.+++...+..+.+ .
T Consensus 472 ~~~~~~~~~-~~~A~~~---~------~~a~~~~~~~--------------------~~~~~~la~~~~~~g~~~---~- 517 (899)
T TIGR02917 472 GAIYLGKGD-LAKAREA---F------EKALSIEPDF--------------------FPAAANLARIDIQEGNPD---D- 517 (899)
T ss_pred HHHHHhCCC-HHHHHHH---H------HHHHhhCCCc--------------------HHHHHHHHHHHHHCCCHH---H-
Confidence 888753322 1111100 0 0000112210 000111111122221111 0
Q ss_pred hcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchH
Q 000428 974 LTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSR 1053 (1520)
Q Consensus 974 l~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~k 1053 (1520)
-....++++.. -|. +++-.......+...|-+.+-+.++++.+..+ +..
T Consensus 518 -------A~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~ 566 (899)
T TIGR02917 518 -------AIQRFEKVLTI-DPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN---------------------PQE 566 (899)
T ss_pred -------HHHHHHHHHHh-CcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------ccc
Confidence 01122222221 121 12223333344444444455555554433110 000
Q ss_pred HHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhc
Q 000428 1054 VMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREG 1133 (1520)
Q Consensus 1054 l~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~ 1133 (1520)
...+ ..++......|.+++|..+|++ +.+ .....+++|+.+|..+...|
T Consensus 567 ~~~~---------~~l~~~~~~~~~~~~A~~~~~~--------------------~~~--~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 567 IEPA---------LALAQYYLGKGQLKKALAILNE--------------------AAD--AAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred hhHH---------HHHHHHHHHCCCHHHHHHHHHH--------------------HHH--cCCCCHHHHHHHHHHHHHcC
Confidence 0000 1234444455555555555554 111 12346788999999998889
Q ss_pred cHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhc-CCcchhHHHHHHHHhhCChhhHHHHhcC-
Q 000428 1134 LVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKV-KEPKVDSELIYAYAKIDRLGDIEEFILM- 1206 (1520)
Q Consensus 1134 ~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~-~ep~id~~lv~~yAk~~~l~ele~fl~~- 1206 (1520)
+.++|+..|-++ .++..+.....++...|++++-+.+++.+.+.. .++..-..++..+.+.|++.+...++..
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988765 445556677777888889988888888765542 2233333478888888888888766443
Q ss_pred ----cCcchH-HHHHhhhhccccHHHHHHHHHhhc-------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHH
Q 000428 1207 ----PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS-------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFAC 1274 (1520)
Q Consensus 1207 ----~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~-------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~ac 1274 (1520)
++...+ ...|..++..|+|+.|...|.... .+..++.+|.+.|++++|.+...++-....
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-------- 767 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-------- 767 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------
Confidence 334444 558889999999999999888653 466789999999999999888777421100
Q ss_pred hcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHH
Q 000428 1275 VDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFS 1354 (1520)
Q Consensus 1275 v~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~ 1354 (1520)
. +++-...+...|...|++++++.+|++++.....+...+-.|+.+|.+-+..+ .++.|.
T Consensus 768 ---~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~---A~~~~~ 827 (899)
T TIGR02917 768 ---N--------------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPR---ALEYAE 827 (899)
T ss_pred ---C--------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH---HHHHHH
Confidence 0 00112345566666677777777777666555555555555666666554422 444443
Q ss_pred HhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHH
Q 000428 1355 TRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAA 1389 (1520)
Q Consensus 1355 ~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~ 1389 (1520)
..+.+. +.+...|..+..+|.+.|++++|+
T Consensus 828 ~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 828 KALKLA-----PNIPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HHHhhC-----CCCcHHHHHHHHHHHHcCCHHHHH
Confidence 333322 233445556666666666666666
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.79 E-value=2.4e-12 Score=163.96 Aligned_cols=817 Identities=15% Similarity=0.088 Sum_probs=408.4
Q ss_pred CCCCcHHHHHHHHhhcCCCChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhccChhhHHHHHHhcCCCHHH
Q 000428 422 GQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKV 501 (1520)
Q Consensus 422 Gq~~pLL~Yf~~ll~~g~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~~D~~LA~~iY~r~~~~~Kv 501 (1520)
|+..--+..|...+...+-+..-...+++....+|+.+--..++..= + ..+|.-. .....+
T Consensus 36 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~-~~~~~~~-------~~~~~~ 96 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKA-----------L-SLGYPKN-------QVLPLL 96 (899)
T ss_pred CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------H-HcCCChh-------hhHHHH
Confidence 45555566666666666666666666666666666665544444221 0 0111100 011234
Q ss_pred HHHHHHhccHHHHHHHHHHhC--CchhHHHH---HHHHh--hcCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCcHH
Q 000428 502 VAAFAERREFDKILIYSKQVG--YTPDYLFL---LQTIL--RTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIR 574 (1520)
Q Consensus 502 I~~~~e~g~f~~~~~Y~~~~~--~~~d~~~l---L~~~~--~~np~~~~~la~~l~~~e~~~~~dv~~vv~~F~~~~l~~ 574 (1520)
..++...|++++++.++.+.. ..+....+ +..+. .-++++|.+.-+.+++..+.++.-....+.+++..+...
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 176 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHH
Confidence 567778888888888887654 23322222 22211 236778888877777665555556777888999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcCCCcchhHHh
Q 000428 575 EATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVI 654 (1520)
Q Consensus 575 e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~~~~dikR~~ 654 (1520)
++.+++.+++..+ |++..... ..|.+....|-+++|.+.|...-+
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~-----------------------------~~~~~~~~~g~~~~A~~~~~~a~~----- 221 (899)
T TIGR02917 177 EARALIDEVLTAD-PGNVDALL-----------------------------LKGDLLLSLGNIELALAAYRKAIA----- 221 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHH-----------------------------HHHHHHHhcCCHHHHHHHHHHHHh-----
Confidence 9999999988764 33222111 123444556666666666542211
Q ss_pred hccccCChhh----HHHHhhcCChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhccchhHHHHHh
Q 000428 655 VNTHAIEPQS----LVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLG 730 (1520)
Q Consensus 655 ~~~~~~~~~~----l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~ 730 (1520)
.... ++.. ..-++..-..+.+...++.+++.. +.+.......+.-+. ..+.++.-..++.
T Consensus 222 -~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~A~~~~~ 285 (899)
T TIGR02917 222 -LRPN-NPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDF-------------QKKNYEDARETLQ 285 (899)
T ss_pred -hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH-------------HhcCHHHHHHHHH
Confidence 0000 0000 111222233455566665555543 222111111111111 1122222222222
Q ss_pred hhccc-CCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCChhhhhHHhhcch
Q 000428 731 SYLSS-SEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNN 809 (1520)
Q Consensus 731 ~~~~~-~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~yLy~~~ 809 (1520)
.+... .+.+..++.+..++.+.|++.+.+...+..-..+|... + . ..-++..++..+
T Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~-~--------~~~la~~~~~~g 343 (899)
T TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH-------------Q-A--------RRLLASIQLRLG 343 (899)
T ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------------H-H--------HHHHHHHHHHCC
Confidence 22221 12344556666777777887776666543221111100 0 0 001222222221
Q ss_pred -hHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHhhcCCcchH
Q 000428 810 -MLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVH 888 (1520)
Q Consensus 810 -~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l~eg~~d~~ 888 (1520)
.-+.++.+. .+++.+.....+ ...+...+-+.|+++.-+.+++..+.....++.
T Consensus 344 ~~~~A~~~~~-------------~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 398 (899)
T TIGR02917 344 RVDEAIATLS-------------PALGLDPDDPAA------------LSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398 (899)
T ss_pred CHHHHHHHHH-------------HHHhcCCCCHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 222222222 222221111111 112334456677788888888887777777888
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHHHHHcCCHH
Q 000428 889 VHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDAD 968 (1520)
Q Consensus 889 l~~alakiyid~~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~ylvk~~~~~ 968 (1520)
.++.+|.+|...+. +++-++ .-+..-+.+|... .....++...-..+.+...
T Consensus 399 ~~~~l~~~~~~~~~-~~~A~~---------~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A----------- 450 (899)
T TIGR02917 399 ARTQLGISKLSQGD-PSEAIA---------DLETAAQLDPELG-------RADLLLILSYLRSGQFDKA----------- 450 (899)
T ss_pred HHHHHHHHHHhCCC-hHHHHH---------HHHHHHhhCCcch-------hhHHHHHHHHHhcCCHHHH-----------
Confidence 88888888864432 222111 0111111222110 0000111111011111111
Q ss_pred HHHHHhcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhh-hcCCCccccchhhhHHHHHHH
Q 000428 969 LWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIV-LQNSAFSGNFNLQNLLILTAI 1047 (1520)
Q Consensus 969 lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekiv-l~~~~fs~N~~LqnLlIlta~ 1047 (1520)
..++++++.. .|. ++.-.......+...|-+.+-++.+++.+ ..+..+ ..+.+|..+...
T Consensus 451 -------------~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~ 511 (899)
T TIGR02917 451 -------------LAAAKKLEKK-QPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF---PAAANLARIDIQ 511 (899)
T ss_pred -------------HHHHHHHHHh-CCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHH
Confidence 1112222211 221 23333444455556666666677777655 222111 123333333323
Q ss_pred hhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHH
Q 000428 1048 KADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAK 1127 (1520)
Q Consensus 1048 k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgk 1127 (1520)
..+++...++.++.-..++.... .+.....+|.+.|++++|+..+-+ +.+. ...+.+.|..+|.
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~--~~~~~~~~~~l~~ 575 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLR-------AILALAGLYLRTGNEEEAVAWLEK-------AAEL--NPQEIEPALALAQ 575 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHH-------HHHHHHHHHHHcCCHHHHHHHHHH-------HHHh--CccchhHHHHHHH
Confidence 33333333333333221111110 001111222222333333222111 1111 1234567777777
Q ss_pred HHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHHHHHHHHhhCChhhHH
Q 000428 1128 AQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSELIYAYAKIDRLGDIE 1201 (1520)
Q Consensus 1128 a~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~lv~~yAk~~~l~ele 1201 (1520)
.+...|+.++|+..|-++ .+++.+..+..++...|++++-+.+++.+-+. ..+|..-..++.+|.+.|+.++..
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 777777788887777654 34555666777777777777777777755443 223333334667777777777664
Q ss_pred HHhcC-----cCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1202 EFILM-----PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1202 ~fl~~-----~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
.++.. ++.... ...+..+.+.|+++.|..+++... -+..++.+|.+.|+|++|++..+++-...
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-- 733 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-- 733 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 44321 332223 556777777777777777776653 24456777777777777777777643211
Q ss_pred HHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhH
Q 000428 1268 KEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLM 1347 (1520)
Q Consensus 1268 k~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLm 1347 (1520)
..++.+..+...|...|++++++..+++.+.....+...+..+|.+|.+- ++.-
T Consensus 734 ------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--g~~~ 787 (899)
T TIGR02917 734 ------------------------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ--KDYD 787 (899)
T ss_pred ------------------------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--cCHH
Confidence 11122345678899999999999999999887777777777788888753 3444
Q ss_pred HHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhc---Cch-hhcchhhHHHHHhhhhhHHHHHHHH
Q 000428 1348 EHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNH---SPE-AWDHMQFKDVAVKVANVELYYKAVH 1423 (1520)
Q Consensus 1348 ehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h---~~~-a~~h~~fk~ii~kvan~elyYkai~ 1423 (1520)
+.++.|...+... +.....|..+.++|...|+ ++|+...-.- .|+ ..-...+-.+....++.+ +|+.
T Consensus 788 ~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~A~~ 858 (899)
T TIGR02917 788 KAIKHYRTVVKKA-----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD---RALP 858 (899)
T ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH---HHHH
Confidence 5555555555333 4456678889999999999 7777543322 111 111111222222333333 3444
Q ss_pred HHH---hh---CcchHHHHHHHHhhcCCHHHHHHHHHh
Q 000428 1424 FYL---QE---HPDLINDLLNVLALRVDHTRVVDIMRK 1455 (1520)
Q Consensus 1424 FyL---~~---~P~~l~dlL~~l~~rlD~~rvV~~~~k 1455 (1520)
++- +. .|.....+...+....++...+..+++
T Consensus 859 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 22 345555566667777777777766654
No 7
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.70 E-value=2e-16 Score=162.83 Aligned_cols=137 Identities=32% Similarity=0.472 Sum_probs=128.8
Q ss_pred CCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHH-HHhCCChHHHHH
Q 000428 993 LPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVN-RLDNFDGPAVGE 1071 (1520)
Q Consensus 993 lpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~-~ldnyd~~~IA~ 1071 (1520)
+|+..++.+++.+|.+|++++.|.+|+..||+++..+ +.+++++|+||...++.++.++++|++ ..++||...+++
T Consensus 1 l~~~~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~---~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~ 77 (140)
T smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLN---SENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGK 77 (140)
T ss_pred CCcCCCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC---ccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHH
Confidence 4678889999999999999999999999999999665 378999999999999999999999999 888999999999
Q ss_pred HHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhh
Q 000428 1072 VAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLRE 1132 (1520)
Q Consensus 1072 ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~ 1132 (1520)
+|.++++|++|+.+|+|.|++.+|+.+++++.++.++|++|+.+.+++++|.+++.++++.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLDK 138 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999878999999999999999999988887764
No 8
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-13 Score=169.73 Aligned_cols=350 Identities=19% Similarity=0.245 Sum_probs=240.4
Q ss_pred ChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHh
Q 000428 1065 DGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIR 1144 (1520)
Q Consensus 1065 d~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yik 1144 (1520)
|+.+=.+...++++||||..+=+++....+ +. .-.+||-.+--+++..|++.+|-.--.+
T Consensus 358 ~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~-------------~~-------~i~kv~~~yI~HLl~~~~y~~Aas~~p~ 417 (846)
T KOG2066|consen 358 DQEDHIDWLLEKKKYEEALDAAKASIGNEE-------------RF-------VIKKVGKTYIDHLLFEGKYDEAASLCPK 417 (846)
T ss_pred CcchhHHHHHHhhHHHHHHHHHHhccCCcc-------------cc-------chHHHHHHHHHHHHhcchHHHHHhhhHH
Confidence 344444566788888888877666433221 11 1223444444444556677766554433
Q ss_pred c--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHH----HHHHHHhhCChhhHHHHhcC------cCcchH
Q 000428 1145 A--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSE----LIYAYAKIDRLGDIEEFILM------PNVANL 1212 (1520)
Q Consensus 1145 a--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~----lv~~yAk~~~l~ele~fl~~------~N~a~v 1212 (1520)
- ++......-++.....++-.++.+||= ..+|+++.. ++..+.. ...-..-+|++. .....+
T Consensus 418 m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lP-----t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~ii 491 (846)
T KOG2066|consen 418 MLGNNAAEWELWVFKFAELDQLTDIAPYLP-----TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTII 491 (846)
T ss_pred HhcchHHHHHHHHHHhccccccchhhccCC-----CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHH
Confidence 3 666666777888888899999999987 666666652 4444443 222222233332 111122
Q ss_pred HHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHH----HHhcchhhhHHH---h
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCF----ACVDAEEFRLAQ---I 1285 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~----acv~~~e~rLA~---~ 1285 (1520)
+++-.+.-..-.=.+.+++ ||..|.+-++|+.|....-+..+++++.-+.. --+...-.+|.. .
T Consensus 492 sa~~~q~~q~Se~~~L~e~---------La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~sk 562 (846)
T KOG2066|consen 492 SATEPQIKQNSESTALLEV---------LAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSK 562 (846)
T ss_pred hhcchHHHhhccchhHHHH---------HHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchh
Confidence 3333332222222233333 89999999999999999999999888764311 111111122322 3
Q ss_pred hccccccccc---cHHHHHHHHHhcC--CHHHHHHHHHhh--cCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhc
Q 000428 1286 CGLNIIVQVD---DLEEVSEYYQNRG--YFNELISLMESG--LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLN 1358 (1520)
Q Consensus 1286 ~gl~li~~~d---~l~elv~~Ye~~G--~f~eLI~Lle~g--l~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iN 1358 (1520)
++..+.++.. .-.+|+...+++- .|.++..++.+. .|.+.+.+ +.-+||+|+..+|+++|+. ++.+|
T Consensus 563 ka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~rd~~~~~~y~dk-----~I~LYAEyDrk~LLPFLr~-s~~Y~ 636 (846)
T KOG2066|consen 563 KAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFKRDHFMGSEYHDK-----QIELYAEYDRKKLLPFLRK-SQNYN 636 (846)
T ss_pred hHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhhcCccccchhhhH-----HHHHHHHHhHhhhhHHHHh-cCCCC
Confidence 5555555553 2366777777555 567888999888 56666633 3779999999999999999 99999
Q ss_pred hHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhh----------
Q 000428 1359 IPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQE---------- 1428 (1520)
Q Consensus 1359 i~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~---------- 1428 (1520)
+.|+++.|.+..+++|.|||+.++|+..+|+.+||+. +.|+| +||.|+.++
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~e----------------l~die---~AIefvKeq~D~eLWe~LI 697 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINE----------------LRDIE---KAIEFVKEQDDSELWEDLI 697 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHH----------------hhCHH---HHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999 88999 899999987
Q ss_pred -----CcchHHHHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHHH-hhcChH
Q 000428 1429 -----HPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAV-QSNNVS 1475 (1520)
Q Consensus 1429 -----~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~v-q~~n~~ 1475 (1520)
||+...-+|. +....||-.||+.++.+-+||-+++.|..+ |+.|++
T Consensus 698 ~~~ldkPe~~~~ll~-i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~dy~~q 749 (846)
T KOG2066|consen 698 NYSLDKPEFIKALLN-IGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQDYNLQ 749 (846)
T ss_pred HHhhcCcHHHHHHHH-hhhcccHHHHHhcCCCCCCCccHHHHHHHHHHhhhhh
Confidence 8888888866 777899999999999999999999998764 455544
No 9
>PLN03077 Protein ECB2; Provisional
Probab=99.54 E-value=8.8e-10 Score=144.81 Aligned_cols=534 Identities=13% Similarity=0.112 Sum_probs=267.5
Q ss_pred CCCCCCHHHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhcc-----CchhHHHHhhCCC-CCCCChhHH
Q 000428 554 GGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVT-----FPNVADAILANGM-FSHYDRPRI 627 (1520)
Q Consensus 554 ~~~~~dv~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~-----~p~Vad~Il~~~~-l~~yD~~~I 627 (1520)
++++.+.+..+..+...+.+.++..++.+....+-+.+...-+.|+..-... ..++-+.+...+. ++-+-...+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3445667788888888888888888888776654333332223333221111 1244444433322 222333556
Q ss_pred HHHHHHhCcHHHHHHhcCCCcchhHHhhccccCChhhHHHHhhc-CChHhHHHHHHHHHHhhccch---HHHHHHHHHHH
Q 000428 628 AQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGT-LSREWALECMKDLLLVNLRGN---LQIIVQTAKEY 703 (1520)
Q Consensus 628 A~lCe~agL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~-l~~~~~~~~l~~~l~~n~~~n---lq~vv~~a~~y 703 (1520)
...+-+.|..+.|++.|+.... | +...=..++.-+++ -..+++++.+++|.+...+.| +..+++.+.+-
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~--~-----d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE--R-----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC--C-----CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc
Confidence 6677789999999999987752 1 11111135555544 556899999999988765544 33333333211
Q ss_pred HhhhhhHHHHHHHhhhccchhHHHHHhhhcccCCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCC
Q 000428 704 CEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLP 783 (1520)
Q Consensus 704 ~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~ 783 (1520)
.+.-...++-....+. ....|+.+...+|.+|+|.|++.+..++..+-.
T Consensus 201 ~~~~~~~~~~~~~~~~--------------g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------------- 249 (857)
T PLN03077 201 PDLARGREVHAHVVRF--------------GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----------------- 249 (857)
T ss_pred cchhhHHHHHHHHHHc--------------CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----------------
Confidence 1100001111111111 234678899999999999999998887765421
Q ss_pred CCCCcceeccccCChhhhhHHhhcchhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHH
Q 000428 784 DARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEEC 863 (1520)
Q Consensus 784 d~~pli~vcdr~~~v~~L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~ 863 (1520)
.+ +.++| ...|..|.+.-++..+-.+.......+...+..-+ .-++.-+
T Consensus 250 ~~--------------d~~s~------n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty-----------~~ll~a~ 298 (857)
T PLN03077 250 RR--------------DCISW------NAMISGYFENGECLEGLELFFTMRELSVDPDLMTI-----------TSVISAC 298 (857)
T ss_pred CC--------------Ccchh------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH-----------HHHHHHH
Confidence 11 12223 24566677766666666666666554443332222 2233334
Q ss_pred HHhhhHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHhcCC--ChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccc
Q 000428 864 EKRNRLRLLTQFLEHLVSEG-SQDVHVHNALGKIIIDSNN--NPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQC 940 (1520)
Q Consensus 864 E~R~rl~~L~~~LE~~l~eg-~~d~~l~~alakiyid~~~--~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~ 940 (1520)
-+.|+++.-..+++.-...| ..|..++|+|...|...+. ..+++++. ..++|+ . .
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~------------m~~~d~--~--------s 356 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR------------METKDA--V--------S 356 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh------------CCCCCe--e--------e
Confidence 44555555555555555444 3577888888887743221 01111100 011110 0 0
Q ss_pred hHHHhhhcccchHHHHHHHHHHHcCCHHHHHHHhcCcchHHHHHHHHHHhccC-CCCCCchhHHHHHHHHHhCCCCHHHH
Q 000428 941 DDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTAL-PESKSPEQVSAAVKAFMTADLPHELI 1019 (1520)
Q Consensus 941 d~~LI~v~~~n~~fk~~a~ylvk~~~~~lw~~vl~~~n~~r~~lidqv~~~al-pe~~~~~~vs~~Vkaf~~a~lp~eLi 1019 (1520)
-+.||...-+++.+... ..+.++.....+ | |....+.++.++-..|-..+-.
T Consensus 357 ~n~li~~~~~~g~~~~A------------------------~~lf~~M~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 357 WTAMISGYEKNGLPDKA------------------------LETYALMEQDNVSP---DEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred HHHHHHHHHhCCCHHHH------------------------HHHHHHHHHhCCCC---CceeHHHHHHHHhccchHHHHH
Confidence 01222222222222222 011112222221 2 1224455555555555555555
Q ss_pred HHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHH
Q 000428 1020 ELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVL 1099 (1520)
Q Consensus 1020 ~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vL 1099 (1520)
++.+.++... +..+....|.|| ..+.+.|.+++|..+|++-.
T Consensus 410 ~l~~~~~~~g--~~~~~~~~n~Li---------------------------~~y~k~g~~~~A~~vf~~m~--------- 451 (857)
T PLN03077 410 KLHELAERKG--LISYVVVANALI---------------------------EMYSKCKCIDKALEVFHNIP--------- 451 (857)
T ss_pred HHHHHHHHhC--CCcchHHHHHHH---------------------------HHHHHcCCHHHHHHHHHhCC---------
Confidence 5555443222 222222222222 22223455555555554411
Q ss_pred HHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 000428 1100 LDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMV 1174 (1520)
Q Consensus 1100 i~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~ 1174 (1520)
..+...|..+..++...|+.+||+..|-+. -|...|..++.+|.+.|..+.-......+
T Consensus 452 ----------------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 452 ----------------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred ----------------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 023446777777777777777777777664 24445567777777777776666665554
Q ss_pred hhh--cCCcchhHHHHHHHHhhCChhhHHHHhc--CcCcchHHHHHhhhhccccHHHHHHHHHhhc---------CHHHH
Q 000428 1175 RQK--VKEPKVDSELIYAYAKIDRLGDIEEFIL--MPNVANLQNVGDRLYDDTLYEAAKIIYAFIS---------NWAKL 1241 (1520)
Q Consensus 1175 r~~--~~ep~id~~lv~~yAk~~~l~ele~fl~--~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~---------N~~kL 1241 (1520)
.+. ..+..+-+.|+.+|+|.|++.+...... .++...+..+..-|...|+.+.|..+|+... .|..+
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 443 4445555567777777777666633322 2333333444445555555555555554322 34444
Q ss_pred HHHHHHhcCHHHHHHHHH
Q 000428 1242 AVTLVKLKQFQGAVDAAR 1259 (1520)
Q Consensus 1242 A~~lv~L~~y~~Ave~Ak 1259 (1520)
-..+.+.|.+++|.++..
T Consensus 596 l~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHHhhcChHHHHHHHHH
Confidence 444455555555544444
No 10
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.54 E-value=6.2e-14 Score=144.45 Aligned_cols=138 Identities=27% Similarity=0.386 Sum_probs=130.1
Q ss_pred cccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhh
Q 000428 1290 IIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQ 1369 (1520)
Q Consensus 1290 li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~ 1369 (1520)
...++...+.++..|++.|...+++.+|+.....+.++.+++|.|..+||+|+|++++++++..++.+|++++++.|++.
T Consensus 3 ~~~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 3 EVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKA 82 (140)
T ss_pred cCCCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHc
Confidence 45677889999999999999999999999998777799999999999999999999999999668999999999999999
Q ss_pred cchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCc
Q 000428 1370 QHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHP 1430 (1520)
Q Consensus 1370 ~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P 1430 (1520)
++|.+++|||.+.|++++|+.+++++. ++.+.+++.+.+..+.|++++++.||++.+|
T Consensus 83 ~l~~~~~~l~~k~~~~~~Al~~~l~~~---~d~~~a~~~~~~~~~~~lw~~~~~~~l~~~~ 140 (140)
T smart00299 83 KLYEEAVELYKKDGNFKDAIVTLIEHL---GNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140 (140)
T ss_pred CcHHHHHHHHHhhcCHHHHHHHHHHcc---cCHHHHHHHHHhCCCHHHHHHHHHHHHccCC
Confidence 999999999999999999999999985 7889999999999999999999999998766
No 11
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.49 E-value=3e-16 Score=161.76 Aligned_cols=138 Identities=30% Similarity=0.516 Sum_probs=124.1
Q ss_pred CCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCc-hHHHHHHHHHhCCChHHHHHH
Q 000428 994 PESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADP-SRVMDYVNRLDNFDGPAVGEV 1072 (1520)
Q Consensus 994 pe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~-~kl~~yI~~ldnyd~~~IA~i 1072 (1520)
+++.++++++.+|+.|.+++.|.+|+..||.++.++.. .++.++|+|+...++.++ ++|++|++..++||.+.++++
T Consensus 2 ~~~~~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~ 79 (143)
T PF00637_consen 2 IESTDPLEISEVISAFEERNQPEELIEYLEALVKENKE--NNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRL 79 (143)
T ss_dssp HHHCTTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHH
T ss_pred CcCCCccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccc--cCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHH
Confidence 45567889999999999999999999999999966522 789999999999999998 999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhcc
Q 000428 1073 AVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGL 1134 (1520)
Q Consensus 1073 a~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~ 1134 (1520)
|.++++|++|+.+|.|.|+|++|+.+ +.+.+++++|.++|.+++++++|..+++++++.+.
T Consensus 80 c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 80 CEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999998 77777899999999999999999999998887654
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=1.5e-09 Score=147.02 Aligned_cols=647 Identities=13% Similarity=0.074 Sum_probs=338.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCc
Q 000428 513 KILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHG 592 (1520)
Q Consensus 513 ~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~ 592 (1520)
.+++|.+..+..+.=...|+.+++.+|+ +|.-....+.+.+..|..+++...|.+.++.+ |+++
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~ 96 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSN 96 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCCh
Confidence 4566666666655555555555555555 23334566778899999999999999988765 5555
Q ss_pred hhhhHHHHhhhccC---chhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcCCCcchhHHhhccccCChhhHHHHh
Q 000428 593 FLQTKVLEINLVTF---PNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFF 669 (1520)
Q Consensus 593 ~LQt~Lle~nl~~~---p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~ 669 (1520)
..+. +...+... ++.. -..|++....|-+++|++.|+..-.. +.=++..-..|.
T Consensus 97 ~~~~--~~~~~~~~~~~~~~~--------------l~~A~ll~~~g~~~eA~~~~~~~l~~-------~p~~~~la~~y~ 153 (1157)
T PRK11447 97 AYRS--SRTTMLLSTPEGRQA--------------LQQARLLATTGRTEEALASYDKLFNG-------APPELDLAVEYW 153 (1157)
T ss_pred HHHH--HHHHHHhcCCchhhH--------------HHHHHHHHhCCCHHHHHHHHHHHccC-------CCCChHHHHHHH
Confidence 4332 22222211 1111 23456777999999999999754210 011111112222
Q ss_pred hc-----CChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhccchhHHHHHhhhcccCCCChhHHH
Q 000428 670 GT-----LSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFK 744 (1520)
Q Consensus 670 ~~-----l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~dp~V~~k 744 (1520)
.. -..+++++.|+.+++.+ + .++.++..
T Consensus 154 ~~~~~~~g~~~~A~~~L~~ll~~~-P----------------------------------------------~~~~~~~~ 186 (1157)
T PRK11447 154 RLVAKLPAQRPEAINQLQRLNADY-P----------------------------------------------GNTGLRNT 186 (1157)
T ss_pred HHHhhCCccHHHHHHHHHHHHHhC-C----------------------------------------------CCHHHHHH
Confidence 22 23355666666666543 2 44556677
Q ss_pred HHHHHHHhCChhHHHHHhhcC---CCCChHhHHHHHhhcCCCCCCCcceeccccCChhhhhHHhhcchhHHHHHHHhhhc
Q 000428 745 YIEAAAKTGQIKEVERVTRES---NFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKV 821 (1520)
Q Consensus 745 yi~A~~k~~q~~EvEr~~res---n~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~yLy~~~~~~~Ie~Yv~~v 821 (1520)
+...+.+.|+..|-....++- +-.+. ...+-..+. +...+.... ....+..|.+..
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~-~aa~~~~~~-------l~~~~~~~~-------------~~~~l~~~l~~~ 245 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRD-AAAQLWYGQ-------IKDMPVSDA-------------SVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchH-HHHHHHHHH-------HhccCCChh-------------hHHHHHHHHHHC
Confidence 777777777766554443331 10111 011110000 000000000 012233333321
Q ss_pred CCCChh----HHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q 000428 822 NPGNAP----LVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKII 897 (1520)
Q Consensus 822 npa~~~----~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l~eg~~d~~l~~alakiy 897 (1520)
.-.... ..+........+......+ +-..+..+|++..-+..+++.+.....++.++..||.+|
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~~~------------~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRARA------------QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHHHH------------HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 111100 0111111110111111111 123456789999999999999999889999999999999
Q ss_pred HhcCCChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHHHHHcCCHHHHHHHhcCc
Q 000428 898 IDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPE 977 (1520)
Q Consensus 898 id~~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~ylvk~~~~~lw~~vl~~~ 977 (1520)
...+. .++=+. .-+.+-+.+|.-.- .+.+. .++... .--....++.-+.+..+.+
T Consensus 314 ~~~g~-~~eA~~---------~l~~Al~~~p~~~~----~~~~~-~ll~~~-~~~~~~~~g~~~~~~g~~~--------- 368 (1157)
T PRK11447 314 SQQGD-RARAVA---------QFEKALALDPHSSN----RDKWE-SLLKVN-RYWLLIQQGDAALKANNLA--------- 368 (1157)
T ss_pred HHcCC-HHHHHH---------HHHHHHHhCCCccc----hhHHH-HHHHhh-hHHHHHHHHHHHHHCCCHH---------
Confidence 65433 222111 11111222332100 00010 111100 0000011111122222211
Q ss_pred chHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhh-hcCCCccccchhhhHHHHHHHhhCchHHHH
Q 000428 978 NEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIV-LQNSAFSGNFNLQNLLILTAIKADPSRVMD 1056 (1520)
Q Consensus 978 n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekiv-l~~~~fs~N~~LqnLlIlta~k~d~~kl~~ 1056 (1520)
--.....+++.. -|. ++.-....-..++..|-+.+-++.+++++ +++... .++.+|..++ ...++++...
T Consensus 369 --eA~~~~~~Al~~-~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~---~a~~~L~~l~-~~~~~~~A~~ 439 (1157)
T PRK11447 369 --QAERLYQQARQV-DNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT---NAVRGLANLY-RQQSPEKALA 439 (1157)
T ss_pred --HHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-HhcCHHHHHH
Confidence 011223333322 232 23333445566778888888899999988 333221 3455666655 3456777777
Q ss_pred HHHHHhCCChHHHHHH--HHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhcc
Q 000428 1057 YVNRLDNFDGPAVGEV--AVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGL 1134 (1520)
Q Consensus 1057 yI~~ldnyd~~~IA~i--a~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~ 1134 (1520)
+++++..-....+... ......+..-..+|...|++++|+..+-+ |++. .-+++.+|+.+|..+...|+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-------Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ-------RLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-------HHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7766543222221110 00111122222333444555555543322 3333 23477888999999999999
Q ss_pred HHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchh-----------HHHHHHHHhhCChh
Q 000428 1135 VSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVD-----------SELIYAYAKIDRLG 1198 (1520)
Q Consensus 1135 v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id-----------~~lv~~yAk~~~l~ 1198 (1520)
.++|+..|-++ ++++.+..........+++++-+.+|..+.....++.+. ..++..+...|+.+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999988765 333333333334556788888888887533222222211 13455677788888
Q ss_pred hHHHHhcC-cCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhC-----C
Q 000428 1199 DIEEFILM-PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKAN-----S 1263 (1520)
Q Consensus 1199 ele~fl~~-~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~-----~ 1263 (1520)
+...++.. ++...+ ..+|+.+.+.|+|++|...|+.+- -+..+|.+|...|++++|.+..+++- +
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 88777663 444444 668888888899998888888554 34566888888889988888888764 2
Q ss_pred hhhHHHHHHHHhcchhhhHHHhhcccccc-cc---------ccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1264 AKTWKEVCFACVDAEEFRLAQICGLNIIV-QV---------DDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1264 ~k~wk~v~~acv~~~e~rLA~~~gl~li~-~~---------d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
+..+..+..+-...|+++.|..+--.++. .| ..+..+...|..+|++++|+.+|++++
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444445556666666643333322 11 123455677788888888888888875
No 13
>PLN03077 Protein ECB2; Provisional
Probab=99.39 E-value=4.7e-08 Score=128.69 Aligned_cols=619 Identities=12% Similarity=0.082 Sum_probs=350.6
Q ss_pred CHHHHHHHHHhccHHHHHHHHHH---hCCch---hHHHHHHHHhhc-CchhHHHHHHHHHhcCCCCC-CCHHHHHHHHHh
Q 000428 498 TPKVVAAFAERREFDKILIYSKQ---VGYTP---DYLFLLQTILRT-DPQGAVNFALMMSQMEGGCP-VDYNTITDLFLQ 569 (1520)
Q Consensus 498 ~~KvI~~~~e~g~f~~~~~Y~~~---~~~~~---d~~~lL~~~~~~-np~~~~~la~~l~~~e~~~~-~dv~~vv~~F~~ 569 (1520)
...++..+++.|+++.+..-..+ .|..| .|..+++.+.+. +.+.+.++-..+.+....+. .--+..+..+..
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 46789999999999988776654 33334 477888877543 45556666666666543222 223667777888
Q ss_pred CCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcCCCcc
Q 000428 570 RNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPD 649 (1520)
Q Consensus 570 ~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~~~~d 649 (1520)
.|.+..+..++.+.-. | +-+.+..+...|-++|.+++|+++|....
T Consensus 134 ~g~~~~A~~~f~~m~~---~------------------------------d~~~~n~li~~~~~~g~~~~A~~~f~~M~- 179 (857)
T PLN03077 134 FGELVHAWYVFGKMPE---R------------------------------DLFSWNVLVGGYAKAGYFDEALCLYHRML- 179 (857)
T ss_pred CCChHHHHHHHhcCCC---C------------------------------CeeEHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence 8888888887776421 1 12345566677779999999999997432
Q ss_pred hhHHhhccccCChh-----hHHHHhhcC-ChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhccch
Q 000428 650 IKRVIVNTHAIEPQ-----SLVEFFGTL-SREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYE 723 (1520)
Q Consensus 650 ikR~~~~~~~~~~~-----~l~~~~~~l-~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e 723 (1520)
+ ..+.|+ .++.-.+++ ..+.+.+....+++.....+.. ....||.++-+.|..+
T Consensus 180 --~-----~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 180 --W-----AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD-------------VVNALITMYVKCGDVV 239 (857)
T ss_pred --H-----cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-------------hHhHHHHHHhcCCCHH
Confidence 1 122222 233333332 2344455555555554333321 2345778888888777
Q ss_pred hHHHHHhhhcccCCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCChhhhhH
Q 000428 724 GLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTH 803 (1520)
Q Consensus 724 ~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~ 803 (1520)
.-...+..... .|+..|.-+|.++++.|+..|..++.++ +.+.+. .++..+
T Consensus 240 ~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~------------M~~~g~---------------~Pd~~t 290 (857)
T PLN03077 240 SARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFT------------MRELSV---------------DPDLMT 290 (857)
T ss_pred HHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHH------------HHHcCC---------------CCChhH
Confidence 76666665543 6788899999999999999877655432 222221 112223
Q ss_pred HhhcchhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCCchhHHHHHHHhhhHHHHHHHHHHHhhcC
Q 000428 804 YLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEG 883 (1520)
Q Consensus 804 yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l~eg 883 (1520)
| ...|..+...-+....-++.+.....+...+.. -...||.-|-+.|+++.-...++.-.
T Consensus 291 y------~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~-----------~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 291 I------TSVISACELLGDERLGREMHGYVVKTGFAVDVS-----------VCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred H------HHHHHHHHhcCChHHHHHHHHHHHHhCCccchH-----------HHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 3 134444444444444444444444433332211 12345666777788777777776532
Q ss_pred CcchHHHHHHHHHHHhcCCChhhhhhcCCCCChHHHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHHHHH
Q 000428 884 SQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVE 963 (1520)
Q Consensus 884 ~~d~~l~~alakiyid~~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~ylvk 963 (1520)
..+...+|.+...|...+ ++++-++ +-+-.++.+ +.-+...|-.+...+.+
T Consensus 351 ~~d~~s~n~li~~~~~~g-~~~~A~~---------lf~~M~~~g-------------------~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNG-LPDKALE---------TYALMEQDN-------------------VSPDEITIASVLSACAC 401 (857)
T ss_pred CCCeeeHHHHHHHHHhCC-CHHHHHH---------HHHHHHHhC-------------------CCCCceeHHHHHHHHhc
Confidence 246667888877774322 2222211 011111111 11111122233222333
Q ss_pred cCCHHHHHHHhcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHH
Q 000428 964 RMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLI 1043 (1520)
Q Consensus 964 ~~~~~lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlI 1043 (1520)
..+.+. -.++.+.++..++.. +..-.+..|.+|...|-..+-.++++++.-.+ ..
T Consensus 402 ~g~~~~-----------a~~l~~~~~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-~v----------- 456 (857)
T PLN03077 402 LGDLDV-----------GVKLHELAERKGLIS--YVVVANALIEMYSKCKCIDKALEVFHNIPEKD-VI----------- 456 (857)
T ss_pred cchHHH-----------HHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-ee-----------
Confidence 333221 134555666665532 22344778899999999888888888743111 10
Q ss_pred HHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCC----cHHHHHHHHH---hhhhHHHHHHHHH--
Q 000428 1044 LTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNL----NVQAVNVLLD---NIRSIERAVEFAF-- 1114 (1520)
Q Consensus 1044 lta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~----~~~Ai~vLi~---~~~~~~~A~e~Ae-- 1114 (1520)
....+...+.++|.++||..+|++-.. .......++. +.+.++.+.++-.
T Consensus 457 ---------------------s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 457 ---------------------SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred ---------------------eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 012233444478888999999887210 0011111111 1222332222221
Q ss_pred -H---hCChhHHHHHHHHHHhhccHHHHHHHHHhc-CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHH
Q 000428 1115 -R---VEEDAVWSQVAKAQLREGLVSDAIESFIRA-DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIY 1189 (1520)
Q Consensus 1115 -k---~~~~eVw~~lgka~l~~~~v~eAI~~Yika-~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~ 1189 (1520)
+ ..+..++.-|-..|...|++++|...|-+. .|...|..+|..+.+.|+.++-+++++..+...-.|...|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T---- 591 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---- 591 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc----
Confidence 1 123344455555555566666666665544 3333444555555555555555555554333333333333
Q ss_pred HHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhc----------CHHHHHHHHHHhcCHHHHHHHHH
Q 000428 1190 AYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS----------NWAKLAVTLVKLKQFQGAVDAAR 1259 (1520)
Q Consensus 1190 ~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~----------N~~kLA~~lv~L~~y~~Ave~Ak 1259 (1520)
...+-..|...|+++.|..+|.... .|..+...|.+.|++++|.+..+
T Consensus 592 ----------------------~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 592 ----------------------FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred ----------------------HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3333334455555555555555432 57888999999999999999998
Q ss_pred Hh---CChhhHHHHHHHHhcchhhhHHHhhcccc-cccc---ccHHHHHHHHHhcCCHHHHHHHHHhh
Q 000428 1260 KA---NSAKTWKEVCFACVDAEEFRLAQICGLNI-IVQV---DDLEEVSEYYQNRGYFNELISLMESG 1320 (1520)
Q Consensus 1260 Ka---~~~k~wk~v~~acv~~~e~rLA~~~gl~l-i~~~---d~l~elv~~Ye~~G~f~eLI~Lle~g 1320 (1520)
+- .+..+|.-+..+|.-.+..++|...+-.+ -+.| ....-+...|.+.|+|+++.++.+.-
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 84 36779999999999889998887654332 2344 34567778999999999999887544
No 14
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.28 E-value=1.2e-08 Score=131.26 Aligned_cols=384 Identities=12% Similarity=0.076 Sum_probs=265.3
Q ss_pred CchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHH-HHHHhhCchHHHHHHHHHhC---CChHHHHHHH
Q 000428 998 SPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLI-LTAIKADPSRVMDYVNRLDN---FDGPAVGEVA 1073 (1520)
Q Consensus 998 ~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlI-lta~k~d~~kl~~yI~~ldn---yd~~~IA~ia 1073 (1520)
++.-.+.+++++...+.+..-..+...++... |..|...-|-|| .++..-+.++.....++... +--..+...+
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSG--FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 44456778888888777776677776655332 333444444444 33333344444444333321 2234456667
Q ss_pred HHcCCHHHHHHHHHhcC---C--cHHHHHHHHH---hhhhHHHHHHH---HHH---hCChhHHHHHHHHHHhhccHHHHH
Q 000428 1074 VEAQLYEEAFAIFKKFN---L--NVQAVNVLLD---NIRSIERAVEF---AFR---VEEDAVWSQVAKAQLREGLVSDAI 1139 (1520)
Q Consensus 1074 ~e~~L~EEA~~LYkK~~---~--~~~Ai~vLi~---~~~~~~~A~e~---Aek---~~~~eVw~~lgka~l~~~~v~eAI 1139 (1520)
.+.|.+++|..+|++-. . .......++. ..+.++.+.++ +.+ ..+..+|..|..+|...|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 78888888888888621 1 1112222222 11223333333 222 346778999999999999999999
Q ss_pred HHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH--HHHHHHHhhCChhhHHHHhc-------CcC
Q 000428 1140 ESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS--ELIYAYAKIDRLGDIEEFIL-------MPN 1208 (1520)
Q Consensus 1140 ~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~--~lv~~yAk~~~l~ele~fl~-------~~N 1208 (1520)
..|-+- .|...|..++..+.+.|++++-++++...+...-.|...+ .++.+|++.|++++.+.... .++
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 999776 5666777999999999999999999987776655565555 59999999999998865532 245
Q ss_pred cchHHHHHhhhhccccHHHHHHHHHhhc-----CHHHHHHHHHHhcCHHHHHHHHHHhC------ChhhHHHHHHHHhcc
Q 000428 1209 VANLQNVGDRLYDDTLYEAAKIIYAFIS-----NWAKLAVTLVKLKQFQGAVDAARKAN------SAKTWKEVCFACVDA 1277 (1520)
Q Consensus 1209 ~a~v~~vgd~~~eeg~YeaAk~~y~~~~-----N~~kLA~~lv~L~~y~~Ave~AkKa~------~~k~wk~v~~acv~~ 1277 (1520)
..-...+.+.|.+.|+++.|+.+|+... -|..|...|++.|++++|++..++.. +.-||.-+..+|..+
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 5555889999999999999999999654 79999999999999999999998743 445677789999999
Q ss_pred hhhhHHHhhccc------cccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHH
Q 000428 1278 EEFRLAQICGLN------IIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIK 1351 (1520)
Q Consensus 1278 ~e~rLA~~~gl~------li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk 1351 (1520)
|..+.|....-. +..+.++...+++.|.+.|+++||..++++..-. ....+|.-|.-+|++.+.-.+- .+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~--p~~~~~~~Ll~a~~~~g~~~~a--~~ 515 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK--PTVNMWAALLTACRIHKNLELG--RL 515 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCcHHH--HH
Confidence 999988754322 3333467899999999999999999999876422 2245677777777766532221 11
Q ss_pred HHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHH
Q 000428 1352 LFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTI 1392 (1520)
Q Consensus 1352 ~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~m 1392 (1520)
.+..-+.+. +++...|.-++-+|.+.|+|++|..+.
T Consensus 516 ~~~~l~~~~-----p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 516 AAEKLYGMG-----PEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHHHHhCCC-----CCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 222222222 334567889999999999999999553
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.23 E-value=2.1e-07 Score=126.43 Aligned_cols=590 Identities=12% Similarity=0.058 Sum_probs=290.0
Q ss_pred HHHHhhhccchhHHHHHhhhccc-CCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHH----HHHhhcCCCCCCC
Q 000428 713 IKLFEQFKSYEGLYFFLGSYLSS-SEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTK----NFLMEAKLPDARP 787 (1520)
Q Consensus 713 i~~fe~~~~~e~L~~yL~~~~~~-~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk----~~lk~~~l~d~~p 787 (1520)
+.+++..+.++.--..|..+... .+||++....++.+.+.|+..+.+..++.-.--+|+... .......-++.+.
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhh
Confidence 34556666666666666665543 367999999999999999998887776664444443321 1112222233333
Q ss_pred cceeccccCChhhhhHHhhc-chhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHH-HHHHhccCCCchhHHHHHHH
Q 000428 788 LINVCDRFGFVPDLTHYLYT-NNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKG-LILSVRSLLPVEPLVEECEK 865 (1520)
Q Consensus 788 li~vcdr~~~v~~L~~yLy~-~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~-LL~~v~~~~~~~eLv~~~E~ 865 (1520)
.+ .++.-|.. ...-..++.|.+...- +-+..-+.- .... ....
T Consensus 115 ~l----------~~A~ll~~~g~~~eA~~~~~~~l~~-------------~p~~~~la~~y~~~------------~~~~ 159 (1157)
T PRK11447 115 AL----------QQARLLATTGRTEEALASYDKLFNG-------------APPELDLAVEYWRL------------VAKL 159 (1157)
T ss_pred HH----------HHHHHHHhCCCHHHHHHHHHHHccC-------------CCCChHHHHHHHHH------------HhhC
Confidence 22 12333333 2234555555554321 111111110 0111 1123
Q ss_pred hhhHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhcCCChh--hhhhcCCCCChHHHHHHHhhcCCc---eEEEEeecccc
Q 000428 866 RNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPE--HFLTTNPYYDSRVVGKYCEKRDPT---LAVVAYRRGQC 940 (1520)
Q Consensus 866 R~rl~~L~~~LE~~l~eg~~d~~l~~alakiyid~~~~pE--~fL~~n~~yd~~vVgk~Ce~~dp~---la~l~y~~g~~ 940 (1520)
.++...-+..||+.+..--.++.++.+||.+|...+...| +.++. +-+..+. .+-+.+
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~------------~~~~~~~~~~aa~~~~----- 222 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQ------------MAKSPAGRDAAAQLWY----- 222 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------------HhhCCCchHHHHHHHH-----
Confidence 4778888889999988888889999999999965444222 11111 0001100 000000
Q ss_pred hHHHhhhcccchHHHHHHHHHHHcCCHHHHHHHhcCcchHH--HHHHHHHHhccCCCCCCchhHHH-HHHHHHhCCCCHH
Q 000428 941 DDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPENEYR--RQLIDQVVSTALPESKSPEQVSA-AVKAFMTADLPHE 1017 (1520)
Q Consensus 941 d~~LI~v~~~n~~fk~~a~ylvk~~~~~lw~~vl~~~n~~r--~~lidqv~~~alpe~~~~~~vs~-~Vkaf~~a~lp~e 1017 (1520)
..+.........-+...+|+.... +...++ +..+++. .....+|..... .-.+++..|-+.+
T Consensus 223 -~~l~~~~~~~~~~~~l~~~l~~~p----------~~~~~~~A~~~L~~~----~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 223 -GQIKDMPVSDASVAALQKYLQVFS----------DGDSVAAARSQLAEQ----QKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred -HHHhccCCChhhHHHHHHHHHHCC----------CchHHHHHHHHHHHH----HHhccCcchHHHHHHHHHHHCCCHHH
Confidence 000011111111111111221111 111111 1112121 111123332221 1234556677788
Q ss_pred HHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHH-----HHHHHHHcCCHH---HHHHHHHhc
Q 000428 1018 LIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPA-----VGEVAVEAQLYE---EAFAIFKKF 1089 (1520)
Q Consensus 1018 Li~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~-----IA~ia~e~~L~E---EA~~LYkK~ 1089 (1520)
-+..+++.+..++. +-..+.+|..+....-++++-.++.++.-.-++.. ..... ....+. ....++.+.
T Consensus 288 A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll-~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 288 AIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL-KVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH-HhhhHHHHHHHHHHHHHC
Confidence 88888887743211 12455666666656667777777766554332211 00000 000000 011222233
Q ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH---HHHHHHHhcCCh
Q 000428 1090 NLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL---DVIRAAEDADVY 1164 (1520)
Q Consensus 1090 ~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~---evi~~a~~a~~~ 1164 (1520)
+++++|+..+-+ |++. .-+++..|+.+|..+...|+.++|+.+|-++ .+|++.. .+.. ++..+.+
T Consensus 365 g~~~eA~~~~~~-------Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~-l~~~~~~ 434 (1157)
T PRK11447 365 NNLAQAERLYQQ-------ARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN-LYRQQSP 434 (1157)
T ss_pred CCHHHHHHHHHH-------HHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhcCH
Confidence 444444443222 3322 2356788999999999999999999999887 4455433 2222 3455678
Q ss_pred hHHHHHHHHHhhhcCCc------chh----HHHHHHHHhhCChhhHHHHhcC-----cCcchH-HHHHhhhhccccHHHH
Q 000428 1165 HDLVRYLLMVRQKVKEP------KVD----SELIYAYAKIDRLGDIEEFILM-----PNVANL-QNVGDRLYDDTLYEAA 1228 (1520)
Q Consensus 1165 e~Li~yL~m~r~~~~ep------~id----~~lv~~yAk~~~l~ele~fl~~-----~N~a~v-~~vgd~~~eeg~YeaA 1228 (1520)
++-+.++.........+ .+. ..++..+...|++.+...++.. |+...+ ..+|..+...|+++.|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888886432211000 000 1245556667777777554332 555544 5678888888888888
Q ss_pred HHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHH----------------HHHHHhcchhhhHHH
Q 000428 1229 KIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKE----------------VCFACVDAEEFRLAQ 1284 (1520)
Q Consensus 1229 k~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~----------------v~~acv~~~e~rLA~ 1284 (1520)
...|+.+- .+..++..+...+++++|++..++.... .|.+ ...+..+.|++.-|.
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 88777542 1233466666778888888777664321 1211 122334444444443
Q ss_pred hhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHH
Q 000428 1285 ICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIR 1364 (1520)
Q Consensus 1285 ~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~ 1364 (1520)
.+--.---+++....+...|.+.|.+++|+.+|++++.++..+......|+.+|.+- ++.-++++.|...+...
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~---- 667 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ--GDLAAARAQLAKLPATA---- 667 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhccC----
Confidence 321100112223345556666666666666666666655544444334444444433 33334444443322211
Q ss_pred HHHhhcchHHHHHHHHhhccHHHHHH
Q 000428 1365 ACDEQQHWKELTYLYIQYDEFDNAAT 1390 (1520)
Q Consensus 1365 ~ce~~~lW~E~vfLy~~~~e~d~A~~ 1390 (1520)
......+..+..++...|++++|+.
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 1223334445555555666666553
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=1.4e-05 Score=106.38 Aligned_cols=593 Identities=12% Similarity=0.038 Sum_probs=319.7
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCCCCh--hHHHHHHHH-----
Q 000428 561 NTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDR--PRIAQLCEK----- 633 (1520)
Q Consensus 561 ~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~--~~IA~lCe~----- 633 (1520)
-..+.+++..|.+.++.+.++++++.+ |+|..+..+| .+|+..|+=+.+-- ..+.++-. ...--+|.-
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L--a~i~~~~kA~~~ye--~l~~~~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL--AAIPVEVKSVTTVE--ELLAQQKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH--HHhccChhHHHHHH--HHHHhCCCChhHHHHHHHHhhccc
Confidence 456689999999999999999999875 5778777765 66655552222220 22222221 112222332
Q ss_pred ---hCcHHHHHHhcCCCcchhHHhhccccCC--hhhHHHHhhc----CCh-HhHHHHHHHHHHhhccchHHHHHHHHHHH
Q 000428 634 ---AGLYMRALQHYTELPDIKRVIVNTHAIE--PQSLVEFFGT----LSR-EWALECMKDLLLVNLRGNLQIIVQTAKEY 703 (1520)
Q Consensus 634 ---agL~e~Ale~Y~~~~dikR~~~~~~~~~--~~~l~~~~~~----l~~-~~~~~~l~~~l~~n~~~nlq~vv~~a~~y 703 (1520)
..-+++|++--+ . |. ...+ +..|.-+..+ +.- +.+++.++.|++.+ +-+-+..++.+.-|
T Consensus 157 ~l~y~q~eqAl~AL~-l----r~----~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay 226 (987)
T PRK09782 157 ALRLAQLPVARAQLN-D----AT----FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVL 226 (987)
T ss_pred hhhhhhHHHHHHHHH-H----hh----hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 333344444222 1 11 1112 1122222122 333 66999999999976 55566666666666
Q ss_pred HhhhhhHHHHHHHhhhccchhHHHHHhhhcccCCCChhHHHHHHHHHHhCChhHHHHHhhcCCCCChH--hHHHHHhhcC
Q 000428 704 CEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPE--KTKNFLMEAK 781 (1520)
Q Consensus 704 ~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e--~vk~~lk~~~ 781 (1520)
.+.+|.+.+++++. .. .-+||.++..|++.+.+.|+..+.++.+++-..-++. .=+..+++..
T Consensus 227 ~q~l~~~~a~al~~-------------~~--lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~ 291 (987)
T PRK09782 227 LAGQLDDRLLALQS-------------QG--IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS 291 (987)
T ss_pred HHhhCHHHHHHHhc-------------hh--cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence 66555544444422 11 1189999999999999999999999999995544333 1144555554
Q ss_pred CCCCCCcceeccccCChhhhhHHhhcchhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHHHHHhccCCC------
Q 000428 782 LPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLP------ 855 (1520)
Q Consensus 782 l~d~~pli~vcdr~~~v~~L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~------ 855 (1520)
=....|. --+..|+++|..-+ +.-.+.-++.|..+-++. -+..+++++..+...+.=++.-....+
T Consensus 292 r~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 292 KYSANPV---QALANYTVQFADNR-QYVVGATLPVLLKEGQYD----AAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred hccCchh---hhccchhhhhHHHH-HHHHHHHHHHHHhccHHH----HHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 3333332 24455554433321 111122355555554433 122345554444432111221111111
Q ss_pred ---------------chhHHHHHHHhhhHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHhcCCChhhhhhcCCCCChH
Q 000428 856 ---------------VEPLVEECEKRNRLRLLTQFLEHLVS---EGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSR 917 (1520)
Q Consensus 856 ---------------~~eLv~~~E~R~rl~~L~~~LE~~l~---eg~~d~~l~~alakiyid~~~~pE~fL~~n~~yd~~ 917 (1520)
++.+.-..-.-|+.++=-.||+.+.. .|+..+.+-+-|+-+|.
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------------------- 424 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE------------------- 424 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH-------------------
Confidence 11111111222333333344444332 22333333334444331
Q ss_pred HHHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHHH---HHcCCHHHHHHHhcCcchHHHHHHHHHHhccCC
Q 000428 918 VVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYV---VERMDADLWEKVLTPENEYRRQLIDQVVSTALP 994 (1520)
Q Consensus 918 vVgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~yl---vk~~~~~lw~~vl~~~n~~r~~lidqv~~~alp 994 (1520)
++|++ + ...-+.+| +-.+....|..=+.+..+ ..+++ ..++|
T Consensus 425 --------~~~~~----------~------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~al~ 469 (987)
T PRK09782 425 --------SHPYL----------A------------TPAKVAILSKPLPLAEQRQWQSQLPGIAD----NCPAI-VRLLG 469 (987)
T ss_pred --------hCCcc----------c------------chHHHHHhccccccchhHHHHhhhhhhhh----hHHHH-HHhcc
Confidence 11110 0 00111111 111112334333332222 12122 13344
Q ss_pred CC-C--CchhHHHHHHHHHhCCCCHHHHHHHHHhh-hcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHH
Q 000428 995 ES-K--SPEQVSAAVKAFMTADLPHELIELLEKIV-LQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVG 1070 (1520)
Q Consensus 995 e~-~--~~~~vs~~Vkaf~~a~lp~eLi~lLekiv-l~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA 1070 (1520)
.. . +++-.-..-...+. +.|.+-+..+.+.+ ..+ .- .+-..+|
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P----------------------d~----------~~~L~lA 516 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP----------------------DA----------WQHRAVA 516 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC----------------------ch----------HHHHHHH
Confidence 31 1 12222222222333 45555555444433 222 10 0112234
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCc
Q 000428 1071 EVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDA 1148 (1520)
Q Consensus 1071 ~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~ 1148 (1520)
..+.+.|.+++|...|++ + ......+..|+.+|.+++..|+.++|+.+|-++ .+|
T Consensus 517 ~al~~~Gr~eeAi~~~rk--------------------a---~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P 573 (987)
T PRK09782 517 YQAYQVEDYATALAAWQK--------------------I---SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL 573 (987)
T ss_pred HHHHHCCCHHHHHHHHHH--------------------H---hccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 455678888888888776 1 111123445788888888899999999998666 445
Q ss_pred chHHHHHHHHH---hcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhc-----CcCcchH-HHHHhhh
Q 000428 1149 TQFLDVIRAAE---DADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFIL-----MPNVANL-QNVGDRL 1219 (1520)
Q Consensus 1149 s~~~evi~~a~---~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~-----~~N~a~v-~~vgd~~ 1219 (1520)
++.......+. +.|++++-+..++.|-...-++..=..++.++.+.|+.++.+.++. .|+.+.+ ...|..+
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55543333333 4489999998888765443333222347888999999999876644 2666666 7799999
Q ss_pred hccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccc
Q 000428 1220 YDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNII 1291 (1520)
Q Consensus 1220 ~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li 1291 (1520)
.+.|++++|...|...- =+..+|.+|..+|++++|+++.+++-..+. +.|.+
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P--------------~~a~i------ 713 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID--------------NQALI------ 713 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------------CCchh------
Confidence 99999999999998653 257789999999999999999999654432 22222
Q ss_pred cccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1292 VQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1292 ~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
........+.+.+|..+.+=++++..++.+
T Consensus 714 -----~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 714 -----TPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 335556777788888888888888766666
No 17
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.04 E-value=4.9e-12 Score=130.58 Aligned_cols=139 Identities=25% Similarity=0.428 Sum_probs=126.3
Q ss_pred HhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhh--cCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhh
Q 000428 1143 IRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQK--VKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLY 1220 (1520)
Q Consensus 1143 ika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~--~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~ 1220 (1520)
+++.++....+||..+.+++.++.|++||.++++. ..++.+.+.|+.+|++.++.+.+++||.+.+..++..+++.|.
T Consensus 2 ~~~~~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~ 81 (143)
T PF00637_consen 2 IESTDPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCE 81 (143)
T ss_dssp HHHCTTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHH
T ss_pred CcCCCccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHH
Confidence 45667777788999999999999999999999973 5778999999999999999999999999988899999999999
Q ss_pred ccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhh
Q 000428 1221 DDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFR 1281 (1520)
Q Consensus 1221 eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~r 1281 (1520)
+.|+|++|..+|...++|.+...++.++++++.|+++|++++++++|..+...|++++++.
T Consensus 82 ~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~~ 142 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPFN 142 (143)
T ss_dssp TTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCTC
T ss_pred hcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999998888889999999999999999999999999999988764
No 18
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.01 E-value=5.2e-07 Score=116.47 Aligned_cols=224 Identities=9% Similarity=0.002 Sum_probs=112.3
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhc------CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh--cCCcchhHHHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA------DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK--VKEPKVDSELIY 1189 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika------~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~--~~ep~id~~lv~ 1189 (1520)
+...|.-+..+|...|++++|++.|-+- -|...|..++.+|.+.|..++-...+....+. ..+..+-+.|+.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 4456666666666666666666666443 24445556666666666666666665554443 233334445666
Q ss_pred HHHhhCChhhHHHHhc---CcCcchHHHHHhhhhccccHHHHHHHHHhhc---------CHHHHHHHHHHhcCHHHHHHH
Q 000428 1190 AYAKIDRLGDIEEFIL---MPNVANLQNVGDRLYDDTLYEAAKIIYAFIS---------NWAKLAVTLVKLKQFQGAVDA 1257 (1520)
Q Consensus 1190 ~yAk~~~l~ele~fl~---~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~---------N~~kLA~~lv~L~~y~~Ave~ 1257 (1520)
+|+|.|++++.+.... .+|...+..+..-|...|+++.|..+|.... .|..+...+.+.|.+++|.++
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666666666644422 2444444555555555555555555555432 244444445555555555555
Q ss_pred HHHhCC-----h--hhHHHHHHHHhcchhhhHHHhhcccccccc--ccHHHHHHHHHhcCCHHHHHHHHHhhcCcccccc
Q 000428 1258 ARKANS-----A--KTWKEVCFACVDAEEFRLAQICGLNIIVQV--DDLEEVSEYYQNRGYFNELISLMESGLGLERAHM 1328 (1520)
Q Consensus 1258 AkKa~~-----~--k~wk~v~~acv~~~e~rLA~~~gl~li~~~--d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~ 1328 (1520)
.++... | .+|--+......+|.++.|...--..-..| .....|+..|-..|+++.+...+++..+++..+.
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 443311 1 133334444444444444432111111112 2234445555555555555555555544444444
Q ss_pred chhHHHHHHHhcc
Q 000428 1329 GIFTELGVLYARY 1341 (1520)
Q Consensus 1329 ~~fTeLailyAky 1341 (1520)
+.|+-|+-+|++-
T Consensus 529 ~~y~~L~~~y~~~ 541 (697)
T PLN03081 529 NNYVVLLNLYNSS 541 (697)
T ss_pred cchHHHHHHHHhC
Confidence 4455455444443
No 19
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.00 E-value=5.3e-07 Score=120.44 Aligned_cols=270 Identities=12% Similarity=0.125 Sum_probs=120.9
Q ss_pred hccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhh-CchHHHHHHHHHhC---CC
Q 000428 990 STALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKA-DPSRVMDYVNRLDN---FD 1065 (1520)
Q Consensus 990 ~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~-d~~kl~~yI~~ldn---yd 1065 (1520)
..+++-..+..+.-.+...+...|...+-+.+++.+... +.+..|.-..+.++-...+. .......+.+..-. +-
T Consensus 361 ~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~-gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~T 439 (1060)
T PLN03218 361 NGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR-GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST 439 (1060)
T ss_pred ccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHH
Confidence 345666666666667777777888888888888875433 34555544444443221111 11222222222211 11
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHhcCC-----cHHHHHHHHH---hhhhHHHHHHHHHHhC------ChhHHHHHHHHHHh
Q 000428 1066 GPAVGEVAVEAQLYEEAFAIFKKFNL-----NVQAVNVLLD---NIRSIERAVEFAFRVE------EDAVWSQVAKAQLR 1131 (1520)
Q Consensus 1066 ~~~IA~ia~e~~L~EEA~~LYkK~~~-----~~~Ai~vLi~---~~~~~~~A~e~Aek~~------~~eVw~~lgka~l~ 1131 (1520)
-..+...|.+.|.+++|..+|.+-.+ .....+.|+. ..+.++.|.++-.+.. +..+|..|..+|..
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 12335555566666666666654211 1122222222 1123444444333321 34445555555555
Q ss_pred hccHHHHHHHHHhc------CCcchHHHHHHHHHhcCChhHHHHHHHHHhh--hcCCcchhH--HHHHHHHhhCChhhHH
Q 000428 1132 EGLVSDAIESFIRA------DDATQFLDVIRAAEDADVYHDLVRYLLMVRQ--KVKEPKVDS--ELIYAYAKIDRLGDIE 1201 (1520)
Q Consensus 1132 ~~~v~eAI~~Yika------~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~--~~~ep~id~--~lv~~yAk~~~l~ele 1201 (1520)
.|++++|+..|-+. -|...|..+|.+|.+.|++++-.+++..... ....|...+ .|+.+|+|.|++++..
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 55555555544333 1233444555555555555554444443322 112232222 2444555555544443
Q ss_pred HHhcC-------cCcchHHHHHhhhhccccHHHHHHHHHhhc---------CHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1202 EFILM-------PNVANLQNVGDRLYDDTLYEAAKIIYAFIS---------NWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1202 ~fl~~-------~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~---------N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
+.... ++..-+..+.+.|...|+++.|..+|.... .|..|...|++.|++++|.++.++
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33221 122222334444444455555544444332 244444444444444444444433
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.94 E-value=4.1e-07 Score=115.76 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=92.6
Q ss_pred HHHHHHhhCChhhHHHHhc-----CcCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHH
Q 000428 1187 LIYAYAKIDRLGDIEEFIL-----MPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQ 1252 (1520)
Q Consensus 1187 lv~~yAk~~~l~ele~fl~-----~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~ 1252 (1520)
++.+|...|++.+...++. .++.... ...|..+...|+|+.|...|...- -|..+|.+|..+|+|+
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4445555555555533322 1333322 445666666666666666555331 2334466666666666
Q ss_pred HHHHHHHHhC-----ChhhHHHHHHHHhcchhhhHHHhhccc-cccc---cccHHHHHHHHHhcCCHHHHHHHHHhhcCc
Q 000428 1253 GAVDAARKAN-----SAKTWKEVCFACVDAEEFRLAQICGLN-IIVQ---VDDLEEVSEYYQNRGYFNELISLMESGLGL 1323 (1520)
Q Consensus 1253 ~Ave~AkKa~-----~~k~wk~v~~acv~~~e~rLA~~~gl~-li~~---~d~l~elv~~Ye~~G~f~eLI~Lle~gl~l 1323 (1520)
+|++..+++- +...|......+...|+++.|....-. +-.. ++....+...|...|++++++..|++++.+
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 6666666552 223344444445555555554432211 1112 233344555566666666666666666555
Q ss_pred cccccchhHH----HHHHHhccC-hhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHH
Q 000428 1324 ERAHMGIFTE----LGVLYARYR-YEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTI 1392 (1520)
Q Consensus 1324 erAh~~~fTe----LailyAky~-pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~m 1392 (1520)
+..+.+++.. +..+.+-|. .+++-+.++.|...+.+. ++....|..+..+|...|++++|+...
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4332221111 111111111 233333333333333222 222334566666666667776666544
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.86 E-value=1.8e-06 Score=109.88 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHH
Q 000428 1301 SEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYL 1378 (1520)
Q Consensus 1301 v~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfL 1378 (1520)
..+|+..|.|++++.++++++.++..+...+..||.+|. ..++.-++++.|...+.+.+-...-.+++.|.|+.=+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~--~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~ 590 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL--QQGDVDEALKLFERAAELARTEGELVQAISYAEATRT 590 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 445667788999999998888777655445555666554 3556777777776665544322222234444444433
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.86 E-value=4.1e-05 Score=102.21 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=124.0
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH--HHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHh
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL--DVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAK 1193 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~--evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk 1193 (1520)
++..|+.+|.++.. ++..+|+..|.++ ..|++.. .+...+...|++++-+..++.+......+..-..++.++.+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~ 554 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQA 554 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 78899999999987 7888899987776 4555544 33455568899999999988653332222111236677788
Q ss_pred hCChhhHHHHhcC-----cCcchH-HHHHhhhhccccHHHHHHHHHhhc-------CHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1194 IDRLGDIEEFILM-----PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS-------NWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1194 ~~~l~ele~fl~~-----~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~-------N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.|++++...++.. +..... ..++..+...|+|+.|...|...- -|..+|.+|.++|++++|+++.++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8998887766432 222222 335556666699999998887554 477789999999999999998888
Q ss_pred hCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHH
Q 000428 1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLY 1338 (1520)
Q Consensus 1261 a~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLaily 1338 (1520)
+-..+.= +++....+...+.+.|.+++++..|++++.+...|....+.||.+|
T Consensus 635 AL~l~Pd-------------------------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 635 ALELEPN-------------------------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHhCCC-------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5421100 0000123334455555555555555555555555444445455544
No 23
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.79 E-value=2.5e-06 Score=114.11 Aligned_cols=205 Identities=10% Similarity=0.036 Sum_probs=156.2
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhcC--------CcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchh--HH
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRAD--------DATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVD--SE 1186 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika~--------d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id--~~ 1186 (1520)
.+..+|..|..++...|++++|.+.|-+.. |...|..++.+|.+.|++++-.+++++.++..-.|... +.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 356789999999999999999999886542 33457789999999999999999998887764444444 46
Q ss_pred HHHHHHhhCChhhHHHHhcC-------cCcchHHHHHhhhhccccHHHHHHHHHhhc---------CHHHHHHHHHHhcC
Q 000428 1187 LIYAYAKIDRLGDIEEFILM-------PNVANLQNVGDRLYDDTLYEAAKIIYAFIS---------NWAKLAVTLVKLKQ 1250 (1520)
Q Consensus 1187 lv~~yAk~~~l~ele~fl~~-------~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~---------N~~kLA~~lv~L~~ 1250 (1520)
++.+|+|.|++.+....... ++..-+..+.+.|...|+++.|..+|.... -|..|...|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999998888666432 455555778888999999999999988654 57888999999999
Q ss_pred HHHHHHHHHHh------CChhhHHHHHHHHhcchhhhHHHhhccc-----cccccccHHHHHHHHHhcCCHHHHHHHHHh
Q 000428 1251 FQGAVDAARKA------NSAKTWKEVCFACVDAEEFRLAQICGLN-----IIVQVDDLEEVSEYYQNRGYFNELISLMES 1319 (1520)
Q Consensus 1251 y~~Ave~AkKa------~~~k~wk~v~~acv~~~e~rLA~~~gl~-----li~~~d~l~elv~~Ye~~G~f~eLI~Lle~ 1319 (1520)
+++|.++.++. .+..+|--++.+|...|+++.|...--. +..+...+..++..|.+.|.++++..+++.
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998865 3556788888888888888877632221 222223457888888889999998888887
Q ss_pred hc
Q 000428 1320 GL 1321 (1520)
Q Consensus 1320 gl 1321 (1520)
..
T Consensus 780 M~ 781 (1060)
T PLN03218 780 AK 781 (1060)
T ss_pred HH
Confidence 64
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.78 E-value=6.8e-07 Score=108.55 Aligned_cols=364 Identities=20% Similarity=0.245 Sum_probs=231.5
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCch-HHHHHHHHHh----CCCh-HHHHHHH
Q 000428 1000 EQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPS-RVMDYVNRLD----NFDG-PAVGEVA 1073 (1520)
Q Consensus 1000 ~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~-kl~~yI~~ld----nyd~-~~IA~ia 1073 (1520)
|-.|-.-.+|...|-...-+.+-+..|.-.+.|.+ +.-||.+..-.+-|-+ .+.-|...+. +|++ ..++.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fid--a~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFID--AYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhH--HHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 44455555666666555555555555522234554 5555655442222221 2233333222 2222 3456677
Q ss_pred HHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcc--
Q 000428 1074 VEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDAT-- 1149 (1520)
Q Consensus 1074 ~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s-- 1149 (1520)
...|+.+||...|-| |++.-. .-.-+|+.||-..-..|.+-.||..|.|| -||-
T Consensus 195 ka~Grl~ea~~cYlk--------------------Ai~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLK--------------------AIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred HhhcccchhHHHHHH--------------------HHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 777888888888877 222222 24457888888888888888888888887 3332
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhH-HHH----hcCcCcchH-HHHHhhhhcc
Q 000428 1150 -QFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDI-EEF----ILMPNVANL-QNVGDRLYDD 1222 (1520)
Q Consensus 1150 -~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~el-e~f----l~~~N~a~v-~~vgd~~~ee 1222 (1520)
.|-+ |+..|.-.+.+++. .-| ...+|.+-+ -++|-.+++.
T Consensus 253 dAYiN---------------------------------LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 253 DAYIN---------------------------------LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred HHHhh---------------------------------HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 2222 22223333333332 223 335888877 6689999999
Q ss_pred ccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhcccccccc
Q 000428 1223 TLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQV 1294 (1520)
Q Consensus 1223 g~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~ 1294 (1520)
|+.+-|...|...- -|..||..+..+|+..+|+++.+|| .+|-+ -||
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka------------------L~l~p-------~ha 354 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA------------------LRLCP-------NHA 354 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH------------------HHhCC-------ccH
Confidence 99999999999764 5788999999999999999999992 24422 367
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHH
Q 000428 1295 DDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKE 1374 (1520)
Q Consensus 1295 d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E 1374 (1520)
|.+.-|...|-+.|++++|++||++++..-..--+-+..||++|- +.+||-+++..|...+.|. +--+..+..
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k--qqgnl~~Ai~~YkealrI~-----P~fAda~~N 427 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK--QQGNLDDAIMCYKEALRIK-----PTFADALSN 427 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH--hcccHHHHHHHHHHHHhcC-----chHHHHHHh
Confidence 888899999999999999999999996333221222334777764 4789999999999988776 333444666
Q ss_pred HHHHHHhhccHHHHHHHHHhc----CchhhcchhhHHHHHhhhhhHHHHHHHHHH---HhhCc---chHHHH---HHHHh
Q 000428 1375 LTYLYIQYDEFDNAATTIMNH----SPEAWDHMQFKDVAVKVANVELYYKAVHFY---LQEHP---DLINDL---LNVLA 1441 (1520)
Q Consensus 1375 ~vfLy~~~~e~d~A~~~mi~h----~~~a~~h~~fk~ii~kvan~elyYkai~Fy---L~~~P---~~l~dl---L~~l~ 1441 (1520)
+=-.|...|+.+.|+...+.. |+-|--|.-.-.+-..-+|++ -||.=| |+-+| +--..+ |..+.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~---~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP---EAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH---HHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 777888889999888665544 554555555545444557776 455555 45566 444555 44555
Q ss_pred hcCCH----HHHHHHHHh
Q 000428 1442 LRVDH----TRVVDIMRK 1455 (1520)
Q Consensus 1442 ~rlD~----~rvV~~~~k 1455 (1520)
.-.|- .+++.+.+.
T Consensus 505 dw~D~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 505 DWTDYDKRMKKLVSIVRD 522 (966)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 66663 455555554
No 25
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1e-05 Score=101.81 Aligned_cols=203 Identities=20% Similarity=0.234 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCc
Q 000428 953 LFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAF 1032 (1520)
Q Consensus 953 ~fk~~a~ylvk~~~~~lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~f 1032 (1520)
.++.-+.||-++.|-+ .-++|-+.| ++-+ |.|.+++-|.++..=.+|...||.+.-..-.+
T Consensus 370 i~~kYgd~Ly~Kgdf~--------------~A~~qYI~t-I~~l----e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~ 430 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFD--------------EATDQYIET-IGFL----EPSEVIKKFLDAQRIKNLTSYLEALHKKGLAN 430 (933)
T ss_pred HHHHHHHHHHhcCCHH--------------HHHHHHHHH-cccC----ChHHHHHHhcCHHHHHHHHHHHHHHHHccccc
Confidence 4556667777776644 235577666 6655 88899999998877788899999877665556
Q ss_pred cccchhhhHHHHHHHhhCchHHHHHHHHHh----CCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHH
Q 000428 1033 SGNFNLQNLLILTAIKADPSRVMDYVNRLD----NFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIER 1108 (1520)
Q Consensus 1033 s~N~~LqnLlIlta~k~d~~kl~~yI~~ld----nyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~ 1108 (1520)
+++..| ||..++---|.+++++||+..+ -||.....++|.+.+.+++|..+=+|++++..++++++++.+.++.
T Consensus 431 ~dhttl--LLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~e 508 (933)
T KOG2114|consen 431 SDHTTL--LLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEE 508 (933)
T ss_pred chhHHH--HHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHH
Confidence 665555 7777756669999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHH---HHHHHHHh---hccHHHHHHHHHhcCCcchHHHHH-------HHHHhcCChhHHHHHHH-HH
Q 000428 1109 AVEFAFRVEEDAVWS---QVAKAQLR---EGLVSDAIESFIRADDATQFLDVI-------RAAEDADVYHDLVRYLL-MV 1174 (1520)
Q Consensus 1109 A~e~Aek~~~~eVw~---~lgka~l~---~~~v~eAI~~Yika~d~s~~~evi-------~~a~~a~~~e~Li~yL~-m~ 1174 (1520)
|..|..++.-+++-. ++|+..++ ..-...+|+.|-...++....... ++---.++|..+..||. |.
T Consensus 509 Al~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~ 588 (933)
T KOG2114|consen 509 ALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMS 588 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHH
Confidence 999999987777654 55666665 334556677766654433322111 11122477888888888 65
Q ss_pred hh
Q 000428 1175 RQ 1176 (1520)
Q Consensus 1175 r~ 1176 (1520)
-.
T Consensus 589 E~ 590 (933)
T KOG2114|consen 589 EI 590 (933)
T ss_pred hc
Confidence 54
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.73 E-value=2.1e-06 Score=110.38 Aligned_cols=212 Identities=11% Similarity=0.009 Sum_probs=114.9
Q ss_pred hhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHh----cCCcHHHHHHHH---HhhhhHHHHHHHHHH-----
Q 000428 1048 KADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKK----FNLNVQAVNVLL---DNIRSIERAVEFAFR----- 1115 (1520)
Q Consensus 1048 k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK----~~~~~~Ai~vLi---~~~~~~~~A~e~Aek----- 1115 (1520)
..-++++++.-.. .=+...++..+...|.+++|..+|.. +-.+.+|...|. -..+.++.|.+..++
T Consensus 29 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~ 106 (656)
T PRK15174 29 SQHPEKVRDSAGN--EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN 106 (656)
T ss_pred hcccHhhhhhccc--ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC
Confidence 4456666655322 23345667777778888888888776 222333332221 123345555555554
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYA 1190 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~ 1190 (1520)
-++++.|..+|.++...|+.++|++.|.++ +++..+.....++...|++++-+..+..+.....++.--...+..
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~ 186 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS 186 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355677777777777777777777777666 333444556666666777777766665322221111111111223
Q ss_pred HHhhCChhhHHHHhcC-----c-CcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHH--
Q 000428 1191 YAKIDRLGDIEEFILM-----P-NVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQG-- 1253 (1520)
Q Consensus 1191 yAk~~~l~ele~fl~~-----~-N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~-- 1253 (1520)
+.+.|++++..+.... + ..... ...|..+.+.|+|++|...|...- -+..||.+|...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 5556666666544322 1 11111 224556666777777776666543 23446777777777764
Q ss_pred --HHHHHHHh
Q 000428 1254 --AVDAARKA 1261 (1520)
Q Consensus 1254 --Ave~AkKa 1261 (1520)
|++.++++
T Consensus 267 ~~A~~~~~~A 276 (656)
T PRK15174 267 LQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHHH
Confidence 45555554
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.63 E-value=6.7e-06 Score=105.84 Aligned_cols=234 Identities=12% Similarity=0.030 Sum_probs=138.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHH------HHHHHHH
Q 000428 1002 VSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPA------VGEVAVE 1075 (1520)
Q Consensus 1002 vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~------IA~ia~e 1075 (1520)
+--+++..+.+|=+..=..+++.++-.. =..-..|.+|++.....-+++.-.+.+++.-..++.. +|.+..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4455666777777777788888887443 1223467777776655556666666666654444332 2444444
Q ss_pred cCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcch
Q 000428 1076 AQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQ 1150 (1520)
Q Consensus 1076 ~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~ 1150 (1520)
.|.+++|...|++ |... .-+++++|..+|.++...|+.++|+..|-+. ++++.
T Consensus 123 ~g~~~~Ai~~l~~--------------------Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a 180 (656)
T PRK15174 123 SKQYATVADLAEQ--------------------AWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM 180 (656)
T ss_pred cCCHHHHHHHHHH--------------------HHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH
Confidence 4555555444444 3322 2346777888888887788888888777443 33333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCcc----hhHHHHHHHHhhCChhhHHHHhc-----CcCcchH-HHHHhhhh
Q 000428 1151 FLDVIRAAEDADVYHDLVRYLLMVRQKVKEPK----VDSELIYAYAKIDRLGDIEEFIL-----MPNVANL-QNVGDRLY 1220 (1520)
Q Consensus 1151 ~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~----id~~lv~~yAk~~~l~ele~fl~-----~~N~a~v-~~vgd~~~ 1220 (1520)
+... ......|++++-+..++.+- ..+|. ....++.++.+.|+.++....+. .++...+ ..+|..+.
T Consensus 181 ~~~~-~~l~~~g~~~eA~~~~~~~l--~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 181 IATC-LSFLNKSRLPEDHDLARALL--PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY 257 (656)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHH--hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3333 23566777777777766321 11221 11224556677777777754432 2444444 55788888
Q ss_pred ccccHHH----HHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1221 DDTLYEA----AKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1221 eeg~Yea----Ak~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
..|+|++ |...|..+- -+..+|.+|...|++++|++..+++-
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888775 566666543 34566788888888888887777643
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.58 E-value=7e-06 Score=97.50 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=58.4
Q ss_pred HHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhC--Chh----hHHHHHHHHhcchhh
Q 000428 1215 VGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKAN--SAK----TWKEVCFACVDAEEF 1280 (1520)
Q Consensus 1215 vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~--~~k----~wk~v~~acv~~~e~ 1280 (1520)
+|..+.+.|+++.|...|...- .+..+|.+|.+.|++++|++..+++- ++. +|..+..+....|++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 4444555555555555554321 23344555555555555555555543 111 122333333344444
Q ss_pred hHHHhhcccc-cccc--ccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccc
Q 000428 1281 RLAQICGLNI-IVQV--DDLEEVSEYYQNRGYFNELISLMESGLGLERAHMG 1329 (1520)
Q Consensus 1281 rLA~~~gl~l-i~~~--d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~ 1329 (1520)
+.|..+.-.. -.+| +.+..++..|...|++++++.+|++++.....+..
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 4443221110 1122 22356677888888888888888888766544333
No 29
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=0.0023 Score=79.45 Aligned_cols=283 Identities=16% Similarity=0.214 Sum_probs=185.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHH--HHHHHHH-H-hhccHHHHHHHH
Q 000428 1067 PAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVW--SQVAKAQ-L-REGLVSDAIESF 1142 (1520)
Q Consensus 1067 ~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw--~~lgka~-l-~~~~v~eAI~~Y 1142 (1520)
++||.-....|.||.|..+|.+.+++.+||..--++ +-|.+|...|++|.-||-- +-+++|+ + ..|++.||-+.|
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~-~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKA-GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhcc-ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 345555556788888888999888888888766554 4688999999998887743 3456666 3 388999999999
Q ss_pred HhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhcc
Q 000428 1143 IRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDD 1222 (1520)
Q Consensus 1143 ika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~ee 1222 (1520)
|-.+.|.. .|.+..+-|.+++.+++... .--|---||- .-.|..+.++
T Consensus 848 iti~~p~~---aiqmydk~~~~ddmirlv~k---~h~d~l~dt~--------------------------~~f~~e~e~~ 895 (1636)
T KOG3616|consen 848 ITIGEPDK---AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTH--------------------------KHFAKELEAE 895 (1636)
T ss_pred EEccCchH---HHHHHHhhCcchHHHHHHHH---hChhhhhHHH--------------------------HHHHHHHHhc
Confidence 99888765 67777788888888887772 1111111111 1234455567
Q ss_pred ccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHH
Q 000428 1223 TLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSE 1302 (1520)
Q Consensus 1223 g~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~ 1302 (1520)
|+.++|-.-|-...+|-..+..|.-.+-|..|-..||.-.-...-|.|.+--.. .+....++.++.....|++-++
T Consensus 896 g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak----siggdaavkllnk~gll~~~id 971 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK----SIGGDAAVKLLNKHGLLEAAID 971 (1636)
T ss_pred cChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH----hhCcHHHHHHHHhhhhHHHHhh
Confidence 777777777777777777777777788888888888887777777776542221 1222233344444456788888
Q ss_pred HHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhcc--ChhhhHHHHHHHHHhh-----chHHHHHHHHh-------
Q 000428 1303 YYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARY--RYEKLMEHIKLFSTRL-----NIPKLIRACDE------- 1368 (1520)
Q Consensus 1303 ~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky--~pekLmehlk~y~~~i-----Ni~K~i~~ce~------- 1368 (1520)
+-.++|-|+-+..|-+-|. +..|| |.-.-||-+ +.+|+-+.-|-|-..| ||. .|+.
T Consensus 972 ~a~d~~afd~afdlari~~---k~k~~---~vhlk~a~~ledegk~edaskhyveaiklntynit----wcqavpsrfd~ 1041 (1636)
T KOG3616|consen 972 FAADNCAFDFAFDLARIAA---KDKMG---EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT----WCQAVPSRFDA 1041 (1636)
T ss_pred hhhcccchhhHHHHHHHhh---hccCc---cchhHHhhhhhhccchhhhhHhhHHHhhcccccch----hhhcccchhhH
Confidence 8888888888888776664 11122 011112222 2456666555554443 333 3331
Q ss_pred -----hcchHHHHHHHHhhccHHHHHHHHHhcC
Q 000428 1369 -----QQHWKELTYLYIQYDEFDNAATTIMNHS 1396 (1520)
Q Consensus 1369 -----~~lW~E~vfLy~~~~e~d~A~~~mi~h~ 1396 (1520)
..-.+++|..+++..+|..|-..-..|.
T Consensus 1042 e~ir~gnkpe~av~mfi~dndwa~aervae~h~ 1074 (1636)
T KOG3616|consen 1042 EFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC 1074 (1636)
T ss_pred HHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC
Confidence 3356788999999999988888877773
No 30
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains. The N terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller []. Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1UTC_B 3GD1_I 3GC3_B 1BPO_C 1C9I_B 1C9L_A 2XZG_A 2XZH_A.
Probab=98.44 E-value=1.3e-07 Score=77.39 Aligned_cols=37 Identities=49% Similarity=0.866 Sum_probs=34.7
Q ss_pred CCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecc
Q 000428 154 LTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVD 197 (1520)
Q Consensus 154 L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~e 197 (1520)
+++||+|+|+++++++|+.++||+ ++++|.|||||+|
T Consensus 1 ~~~~q~i~f~~~~~es~~~iigi~-------~~~~G~v~l~sve 37 (37)
T PF01394_consen 1 GANSQIINFRTAPMESWKFIIGIS-------GRVKGQVQLYSVE 37 (37)
T ss_dssp TCCCEEEECTTECCCEEEEEEEEE-------TCTEEEEEEEETT
T ss_pred CCcccEEEEEeCCCcCeEEEEEEE-------eeeeeEEEEEECC
Confidence 468999999999999999999998 7899999999986
No 31
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1e-05 Score=100.73 Aligned_cols=276 Identities=17% Similarity=0.229 Sum_probs=186.4
Q ss_pred HhhCchHHHHHHHHHhCCChHHH----HHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHH
Q 000428 1047 IKADPSRVMDYVNRLDNFDGPAV----GEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVW 1122 (1520)
Q Consensus 1047 ~k~d~~kl~~yI~~ldnyd~~~I----A~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw 1122 (1520)
.+++|..+..||++-.. +.+ +++.+..|..+-|...|.+.+.|=.-+.+.- -.+..+.|..+|+++++..--
T Consensus 895 L~e~p~~~e~Yv~~~~d---~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C-~qGk~~kAa~iA~esgd~AAc 970 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRD---ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC-IQGKTDKAARIAEESGDKAAC 970 (1416)
T ss_pred HHhChHHHHHHHHhccc---hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe-eccCchHHHHHHHhcccHHHH
Confidence 46688888889887542 133 8889999999999999999877765444331 124578899999999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhh----------cCCcchhHHHHHHHH
Q 000428 1123 SQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQK----------VKEPKVDSELIYAYA 1192 (1520)
Q Consensus 1123 ~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~----------~~ep~id~~lv~~yA 1192 (1520)
|.||+.|+..|.+.+||.||-+|. .|++.|+.|.+.+.-+.|..+-.|+|.. .+--+-++++.. |-
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTrAq---afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmL-YH 1046 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTRAQ---AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVML-YH 1046 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHH-HH
Confidence 999999999999999999999965 5888999999999999999888887642 122244445444 77
Q ss_pred hhCChhhH--HHHh--------------cCcCcc----------------------------------------------
Q 000428 1193 KIDRLGDI--EEFI--------------LMPNVA---------------------------------------------- 1210 (1520)
Q Consensus 1193 k~~~l~el--e~fl--------------~~~N~a---------------------------------------------- 1210 (1520)
|.|.+.+. ..|- .....+
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee 1126 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEE 1126 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 77777655 2331 111111
Q ss_pred -------------------hH-HHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHH
Q 000428 1211 -------------------NL-QNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEV 1270 (1520)
Q Consensus 1211 -------------------~v-~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v 1270 (1520)
.+ +.+|+.|..+|.|-+|-+=|++..|=.+..+.|.|.|+.++-.=.|.-+....+| +
T Consensus 1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY--I 1204 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY--I 1204 (1416)
T ss_pred HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee--e
Confidence 22 4566666666666666666666666666666666666555544444443333333 1
Q ss_pred HHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc--------ccccchhHHHHHHHhccC
Q 000428 1271 CFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE--------RAHMGIFTELGVLYARYR 1342 (1520)
Q Consensus 1271 ~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le--------rAh~~~fTeLailyAky~ 1342 (1520)
+.|-+ ...+.-.-+|+.+-.++.+|.+-.-||-|--+|..-..+| +| ||--+|-+.+.+|-.
T Consensus 1205 mAANy---------LQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa-~gAl~eA~kCl~ka~ 1274 (1416)
T KOG3617|consen 1205 MAANY---------LQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKA-MGALEEAAKCLLKAE 1274 (1416)
T ss_pred ehhhh---------hhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHH-hHHHHHHHHHHHHHH
Confidence 11111 2334556678888999999987777888877877664333 44 555666666666655
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.43 E-value=0.00013 Score=95.64 Aligned_cols=348 Identities=11% Similarity=0.045 Sum_probs=201.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhh-hcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHH
Q 000428 1002 VSAAVKAFMTADLPHELIELLEKIV-LQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE 1080 (1520)
Q Consensus 1002 vs~~Vkaf~~a~lp~eLi~lLekiv-l~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~E 1080 (1520)
+..+-.++...+-+.+-++++++++ +++... ....+|..+....-+++...++++++-.-++.... +.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~ 120 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQND---DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--------LL 120 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------HH
Confidence 5566667777777788888888877 433211 12344544444566777777777766433333211 12
Q ss_pred HHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCC-cch--------H
Q 000428 1081 EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADD-ATQ--------F 1151 (1520)
Q Consensus 1081 EA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d-~s~--------~ 1151 (1520)
....+|...|++++|+..+.+ +.+. .-+++++|..+|.++...+..++|+..+-++.. |.. .
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~-------al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~ 191 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQ-------ALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAA 191 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHH-------HHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 223344444555555443322 3333 345888999999999888999999988876633 221 1
Q ss_pred HHHHHHHHhcC-----Ch---hHHHHHHHHHh-hhcCCcchhHHH-------HHHHHhhCChhhHH-HH---hcC-cCcc
Q 000428 1152 LDVIRAAEDAD-----VY---HDLVRYLLMVR-QKVKEPKVDSEL-------IYAYAKIDRLGDIE-EF---ILM-PNVA 1210 (1520)
Q Consensus 1152 ~evi~~a~~a~-----~~---e~Li~yL~m~r-~~~~ep~id~~l-------v~~yAk~~~l~ele-~f---l~~-~N~a 1210 (1520)
.+.+....... .+ +.-+..++.+. ...++|.....+ +.++-..|++++.. .| +.. +..+
T Consensus 192 ~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P 271 (765)
T PRK10049 192 AELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP 271 (765)
T ss_pred HHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC
Confidence 12233222111 11 11122222111 113444332211 12234557777663 33 222 1122
Q ss_pred h-H-HHHHhhhhccccHHHHHHHHHhhc------------CHHHHHHHHHHhcCHHHHHHHHHHhCChhh-HHHHHHHHh
Q 000428 1211 N-L-QNVGDRLYDDTLYEAAKIIYAFIS------------NWAKLAVTLVKLKQFQGAVDAARKANSAKT-WKEVCFACV 1275 (1520)
Q Consensus 1211 ~-v-~~vgd~~~eeg~YeaAk~~y~~~~------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~-wk~v~~acv 1275 (1520)
+ . ..+|+.+...|+++.|...|..+- ....|+..|...|++++|++..+++..... |..
T Consensus 272 ~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~------ 345 (765)
T PRK10049 272 PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR------ 345 (765)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe------
Confidence 2 2 337888888899998888888652 144567777888888888888777543321 100
Q ss_pred cchhhhHHHhhcccccccccc-----HHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHH
Q 000428 1276 DAEEFRLAQICGLNIIVQVDD-----LEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHI 1350 (1520)
Q Consensus 1276 ~~~e~rLA~~~gl~li~~~d~-----l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehl 1350 (1520)
..++ ..-+|+. ..-+...+...|.+++|+.+|++++.....+..+...||.+|.+-+ +.-+.+
T Consensus 346 ---------~~~~-~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g--~~~~A~ 413 (765)
T PRK10049 346 ---------LYGS-PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG--WPRAAE 413 (765)
T ss_pred ---------ecCC-CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHH
Confidence 0000 0112321 2345678889999999999999999888888888888888885543 233444
Q ss_pred HHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHH
Q 000428 1351 KLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTI 1392 (1520)
Q Consensus 1351 k~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~m 1392 (1520)
+.+...+.+. +.+..++-....++...|+|+.|...+
T Consensus 414 ~~l~~al~l~-----Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 414 NELKKAEVLE-----PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444444443 556678888889999999999987433
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.36 E-value=2.6e-05 Score=95.36 Aligned_cols=302 Identities=16% Similarity=0.185 Sum_probs=201.5
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhC-chHHHHHHHHHh---CC--ChHHHHHHHH
Q 000428 1002 VSAAVKAFMT-ADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKAD-PSRVMDYVNRLD---NF--DGPAVGEVAV 1074 (1520)
Q Consensus 1002 vs~~Vkaf~~-a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d-~~kl~~yI~~ld---ny--d~~~IA~ia~ 1074 (1520)
.+-.--++++ .+++.-.--..+.+-+++.-+-.-..+-||+= ..-. .+.-.-|++.+. .| -...++....
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk---a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK---AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN 229 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH---hhcccchhHHHHHHHHhhCCceeeeehhcchHHh
Confidence 3334445553 34554444455555566655555555555554 1100 011112333332 22 2345566666
Q ss_pred HcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcc-----
Q 000428 1075 EAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDAT----- 1149 (1520)
Q Consensus 1075 e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s----- 1149 (1520)
..|..-+|..-|+| |+.+ +-+=++-|+.||..|...+....|+.+|.+|-+-+
T Consensus 230 ~~Gei~~aiq~y~e------Avkl----------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~ 287 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEE------AVKL----------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV 287 (966)
T ss_pred hcchHHHHHHHHHH------hhcC----------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh
Confidence 77777778777777 3221 12345678889999988889999999999983322
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH---HHHHHHHhhCChhhHHHHhc-----CcCcchH-HHHHhhhh
Q 000428 1150 QFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS---ELIYAYAKIDRLGDIEEFIL-----MPNVANL-QNVGDRLY 1220 (1520)
Q Consensus 1150 ~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~---~lv~~yAk~~~l~ele~fl~-----~~N~a~v-~~vgd~~~ 1220 (1520)
.|-++.-..++.|..+.-|+-.+. -+..+|...- .|..++-..|+..+.+++-+ .+|.++- .++|+.+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykr--al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKR--ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHH--HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 222333345778888888888874 4566676654 38888888899999888743 3777777 77999999
Q ss_pred ccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhcccccc
Q 000428 1221 DDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIV 1292 (1520)
Q Consensus 1221 eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~ 1292 (1520)
|.|.++.|..+|...- -+..||++|...|++++|+.+.+.|-..+.- |-
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------------fA----------- 422 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------------FA----------- 422 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------------HH-----------
Confidence 9999999999998765 5667999999999999999999997655432 22
Q ss_pred ccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhh
Q 000428 1293 QVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRL 1357 (1520)
Q Consensus 1293 ~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~i 1357 (1520)
|.+.-+...|-+.|.-+.|++.|++++....+----+..||.+|- +.+++-+++..|...+
T Consensus 423 --da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k--DsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 423 --DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK--DSGNIPEAIQSYRTAL 483 (966)
T ss_pred --HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh--ccCCcHHHHHHHHHHH
Confidence 225577788999999999999999998776542222344676553 4567777777777766
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.32 E-value=7e-05 Score=89.03 Aligned_cols=242 Identities=14% Similarity=0.062 Sum_probs=139.6
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcc---hHHHHHHHHHhcCChhHHHHHHHHHhhhcCCc-----chhH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDAT---QFLDVIRAAEDADVYHDLVRYLLMVRQKVKEP-----KVDS 1185 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s---~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep-----~id~ 1185 (1520)
++...-+|..|..++..|..++|+..|.++ .+|. .+..+...+...|++++-+.+++.+......+ ..-.
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 445566677777777777777777777776 3333 34455566666777777777776443321111 1112
Q ss_pred HHHHHHHhhCChhhHHHHhcC-----c-CcchHHHHHhhhhccccHHHHHHHHHhhcC-------------HHHHHHHHH
Q 000428 1186 ELIYAYAKIDRLGDIEEFILM-----P-NVANLQNVGDRLYDDTLYEAAKIIYAFISN-------------WAKLAVTLV 1246 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~ele~fl~~-----~-N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N-------------~~kLA~~lv 1246 (1520)
.++.+|.+.|++++...++.. + +......++..+...|+|+.|...|..... +..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 367777777887777555332 2 222336678888888888888888775521 345677888
Q ss_pred HhcCHHHHHHHHHHhCC--hhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1247 KLKQFQGAVDAARKANS--AKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1247 ~L~~y~~Ave~AkKa~~--~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
+.|++++|++.++++-. ++.+ -+ .-.+...|...|++++++.+++++...+
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~--------------~~-------------~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCV--------------RA-------------SILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCH--------------HH-------------HHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 88999999998888542 1111 00 1245566777777888887777776554
Q ss_pred ccc-cchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHH
Q 000428 1325 RAH-MGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTI 1392 (1520)
Q Consensus 1325 rAh-~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~m 1392 (1520)
..+ ...+..|+.+|.+-+ +.-+.++.+...+... + +...+..+..+|.+.|++++|...+
T Consensus 245 p~~~~~~~~~l~~~~~~~g--~~~~A~~~l~~~~~~~-----p-~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALG--DEAEGLEFLRRALEEY-----P-GADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred hhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC-----C-CchHHHHHHHHHHHhCCHHHHHHHH
Confidence 332 223444566665442 2222333322222110 1 1122345566666777777777443
No 35
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.30 E-value=3.1e-05 Score=96.19 Aligned_cols=224 Identities=18% Similarity=0.194 Sum_probs=150.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCc
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDA 1148 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~ 1148 (1520)
+|..+...|.||.|+.+++. |++.+.+..+.-.-. ++...+ .+|..|...+++.+|+..|-+|-+
T Consensus 205 La~~y~~~g~~e~A~~l~k~------Al~~l~k~~G~~hl~--va~~l~------~~a~~y~~~~k~~eAv~ly~~AL~- 269 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQ------ALRILEKTSGLKHLV--VASMLN------ILALVYRSLGKYDEAVNLYEEALT- 269 (508)
T ss_pred HHHHHHHhccHHHHHHHHHH------HHHHHHHccCccCHH--HHHHHH------HHHHHHHHhccHHHHHHHHHHHHH-
Confidence 68889999999999999999 888876655421111 111111 578899999999999999998522
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhc----------CcCcchH----HH
Q 000428 1149 TQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFIL----------MPNVANL----QN 1214 (1520)
Q Consensus 1149 s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~----------~~N~a~v----~~ 1214 (1520)
+...+.=..+|.--+.+- .|.+.|-++|++++.++|+. +.+...| .+
T Consensus 270 -----i~e~~~G~~h~~va~~l~--------------nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 270 -----IREEVFGEDHPAVAATLN--------------NLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred -----HHHHhcCCCCHHHHHHHH--------------HHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 111111111111111111 25666777777777776632 2343333 55
Q ss_pred HHhhhhccccHHHHHHHHHhhc----------------CHHHHHHHHHHhcCHHHHHHHHHHhCChh-------------
Q 000428 1215 VGDRLYDDTLYEAAKIIYAFIS----------------NWAKLAVTLVKLKQFQGAVDAARKANSAK------------- 1265 (1520)
Q Consensus 1215 vgd~~~eeg~YeaAk~~y~~~~----------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k------------- 1265 (1520)
++..|...+.||.|+.+|.... -+++||.+|.+.|+|++|.+.+++|-...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 8888888999999988887543 47888999999999999999999875432
Q ss_pred hHHHHHHHHhcchhhhHH-----------Hhhccccccccc---cHHHHHHHHHhcCCHHHHHHHHHhhcCccccccc
Q 000428 1266 TWKEVCFACVDAEEFRLA-----------QICGLNIIVQVD---DLEEVSEYYQNRGYFNELISLMESGLGLERAHMG 1329 (1520)
Q Consensus 1266 ~wk~v~~acv~~~e~rLA-----------~~~gl~li~~~d---~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~ 1329 (1520)
...+...+|++.+..+-| +.|| .-||+ .+..|...|...|+|++++.|.++.++..+.|-|
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g---~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~ 485 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG---PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLG 485 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCC
Confidence 111356677777766633 2344 12332 3578999999999999999999999877766644
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.19 E-value=0.00059 Score=73.70 Aligned_cols=257 Identities=10% Similarity=0.116 Sum_probs=154.2
Q ss_pred eeEEEEecCCCCeEEEEEcCCCCCccccc---cCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCC-
Q 000428 37 KYICVRETAPQNSVVIIDMNQPMQPLRRP---ITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSE- 112 (1520)
Q Consensus 37 k~icvre~~~~~~v~Ivdl~~~~~~~r~p---i~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e- 112 (1520)
+++++-.. +++|.+.|+.+.....+.. ...-+...+|..+.++.=+. ...++|||+++.+.+..+...+
T Consensus 22 ~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 22 KLLATGSG--DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-----DKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred CEEEEeec--CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceEEEeccCC
Confidence 55554432 3488899987653221111 11124456677666666433 6789999999977777776544
Q ss_pred ceeEEEeccCCeEEEEe--cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccce
Q 000428 113 QVVFWKWISPKMLGVVT--QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGN 190 (1520)
Q Consensus 113 ~vvfWkWis~~~l~lVT--~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~ 190 (1520)
++.--.|.....+.+++ +..|+.|++.. ..+...|..| ...|..-..++++++++..+ -.|.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-----------~~~~ 158 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRGH----TDWVNSVAFSPDGTFVASSS-----------QDGT 158 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEeccC----CCcEEEEEEcCcCCEEEEEc-----------CCCc
Confidence 68888898775554444 68999999862 3445445433 23577777778766544332 2678
Q ss_pred EEEeeccc-ccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCC
Q 000428 191 MQLFSVDQ-QRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDF 269 (1520)
Q Consensus 191 mQLyS~er-~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~ 269 (1520)
+.+|+... +..+.+.+|......+.+..+ .+.++++.. . +.+++.++... .+. ..+. .
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~--~-----~~i~i~d~~~~--~~~-----~~~~----~ 217 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPD---GEKLLSSSS--D-----GTIKLWDLSTG--KCL-----GTLR----G 217 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCC---cCEEEEecC--C-----CcEEEEECCCC--cee-----cchh----h
Confidence 89999873 455667777766555554332 234444433 2 57999988542 110 0110 1
Q ss_pred CCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcE
Q 000428 270 ADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQV 337 (1520)
Q Consensus 270 ~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqV 337 (1520)
..+.+.++.+++.-.+++..++.|.+++||+.++.++..-+....+|...+-++++.-++....+|.|
T Consensus 218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 23466788888884455555569999999999988776655444444444433333334444455543
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.18 E-value=0.0011 Score=87.22 Aligned_cols=361 Identities=12% Similarity=0.087 Sum_probs=199.8
Q ss_pred hhhHHHHHHHhhCchHHHHHHHHHh---CCCh---HHHHHHHHHcCCHHHHHHHHHh---c-CCcHHHHH---HHHHhhh
Q 000428 1038 LQNLLILTAIKADPSRVMDYVNRLD---NFDG---PAVGEVAVEAQLYEEAFAIFKK---F-NLNVQAVN---VLLDNIR 1104 (1520)
Q Consensus 1038 LqnLlIlta~k~d~~kl~~yI~~ld---nyd~---~~IA~ia~e~~L~EEA~~LYkK---~-~~~~~Ai~---vLi~~~~ 1104 (1520)
+-+.+-+..-.-+..++.+...++. ..+. ..+|..+...+.+++|..+|++ . -....+.. .+.-..+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 3345544445556666665555544 3444 3447777788999999999888 2 11122221 1222344
Q ss_pred hHHHHHHHHHH-----hCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 000428 1105 SIERAVEFAFR-----VEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMV 1174 (1520)
Q Consensus 1105 ~~~~A~e~Aek-----~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~ 1174 (1520)
.+++|++..++ -++++ |+.+|.++...|+.++|+..|.++ ++++.......+....+.++.-+..++.
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~- 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD- 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh-
Confidence 67777776665 35667 888888888888888888888666 4444445566666677888877666653
Q ss_pred hhhcCCcch--------hHHHHHHHHh-----hCCh-------hhHHHHhcC-cCc----chHH-H----HHhhhhcccc
Q 000428 1175 RQKVKEPKV--------DSELIYAYAK-----IDRL-------GDIEEFILM-PNV----ANLQ-N----VGDRLYDDTL 1224 (1520)
Q Consensus 1175 r~~~~ep~i--------d~~lv~~yAk-----~~~l-------~ele~fl~~-~N~----a~v~-~----vgd~~~eeg~ 1224 (1520)
....|.- ...++..+-. .+++ ..++.++.. +.. .... . .| .+++.|+
T Consensus 176 --~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~ 252 (765)
T PRK10049 176 --ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDR 252 (765)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhh
Confidence 2223221 1112211110 0111 122233322 111 1111 1 23 2356677
Q ss_pred HHHHHHHHHhhc-------CHHH--HHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccc
Q 000428 1225 YEAAKIIYAFIS-------NWAK--LAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVD 1295 (1520)
Q Consensus 1225 YeaAk~~y~~~~-------N~~k--LA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d 1295 (1520)
|+.|+..|+... ++.. +|..|..+|++++|.+..+++-..+.. . .....+
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~-------------~--------~~~~~~ 311 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET-------------I--------ADLSDE 311 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC-------------C--------CCCChH
Confidence 888887777654 1211 577777788888887776663211100 0 000001
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhhcCccccccc---------------hhHHHHHHHhccChhhhHHHHHHHHHhhchH
Q 000428 1296 DLEEVSEYYQNRGYFNELISLMESGLGLERAHMG---------------IFTELGVLYARYRYEKLMEHIKLFSTRLNIP 1360 (1520)
Q Consensus 1296 ~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~---------------~fTeLailyAky~pekLmehlk~y~~~iNi~ 1360 (1520)
....+..-|.+.|.+++|+.++++........+- ...-+|.++.. .+++-+.++.+.+.+...
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~--~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY--SNDLPQAEMRARELAYNA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Confidence 1335555678999999999999988755421111 11223333332 344445555544443332
Q ss_pred HHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhh-hhhHHHHHHHHHHHhhC-cchHHHHHH
Q 000428 1361 KLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKV-ANVELYYKAVHFYLQEH-PDLINDLLN 1438 (1520)
Q Consensus 1361 K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kv-an~elyYkai~FyL~~~-P~~l~dlL~ 1438 (1520)
+.+..+|..+..++...|++++|...+-+- +..- .+.+++|-....++..+ ....-.++.
T Consensus 390 -----P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a-------------l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 390 -----PGNQGLRIDYASVLQARGWPRAAENELKKA-------------EVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 556788999999999999999998776654 3322 44556555555666443 355555555
Q ss_pred HHhhcC
Q 000428 1439 VLALRV 1444 (1520)
Q Consensus 1439 ~l~~rl 1444 (1520)
.+..+-
T Consensus 452 ~ll~~~ 457 (765)
T PRK10049 452 DVVARE 457 (765)
T ss_pred HHHHhC
Confidence 554443
No 38
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.00031 Score=86.77 Aligned_cols=300 Identities=19% Similarity=0.260 Sum_probs=190.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHH-----H-hCChhHHHHHHHHHHhhccHHHHHHHH
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAF-----R-VEEDAVWSQVAKAQLREGLVSDAIESF 1142 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Ae-----k-~~~~eVw~~lgka~l~~~~v~eAI~~Y 1142 (1520)
||...++.+||+.|=.+|.|-..+++|+....+-- -+-.|++.|. + +...+-| |-+....|++.-||+.|
T Consensus 654 ia~alik~elydkagdlfeki~d~dkale~fkkgd-af~kaielarfafp~evv~lee~w---g~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHDFDKALECFKKGD-AFGKAIELARFAFPEEVVKLEEAW---GDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHccc-HHHHHHHHHHhhCcHHHhhHHHHH---hHHHHHHHhHHHHHHHH
Confidence 45566788888888888888888888888766531 3556666664 2 3334444 55777788999999999
Q ss_pred HhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcc-h-HHHHHhhhh
Q 000428 1143 IRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVA-N-LQNVGDRLY 1220 (1520)
Q Consensus 1143 ika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a-~-v~~vgd~~~ 1220 (1520)
|++++ -...|+++-.+.+|.--+-.|.. |++.+.+ . +-.|++.+-
T Consensus 730 iea~~---~~kaieaai~akew~kai~ildn------------------------------iqdqk~~s~yy~~iadhya 776 (1636)
T KOG3616|consen 730 IEANC---LIKAIEAAIGAKEWKKAISILDN------------------------------IQDQKTASGYYGEIADHYA 776 (1636)
T ss_pred HHhhh---HHHHHHHHhhhhhhhhhHhHHHH------------------------------hhhhccccccchHHHHHhc
Confidence 99765 34567777777666544444431 2222222 2 366889999
Q ss_pred ccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHH----HHHHhcchhhhHHHhhcccccccccc
Q 000428 1221 DDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEV----CFACVDAEEFRLAQICGLNIIVQVDD 1296 (1520)
Q Consensus 1221 eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v----~~acv~~~e~rLA~~~gl~li~~~d~ 1296 (1520)
+.|+||-|-.+|+..+-|.-.--.|-+.|+|..|..+|.+.--|..=--. .+.-=+.|.|+.|
T Consensus 777 n~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ea------------- 843 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEA------------- 843 (1636)
T ss_pred cchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh-------------
Confidence 99999999999999998888888899999999999998886655321000 0011111222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHH----hhcch
Q 000428 1297 LEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACD----EQQHW 1372 (1520)
Q Consensus 1297 l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce----~~~lW 1372 (1520)
-..|..-|..+.+|..|.+- |.+-.+-.|.-||+|+.|-+.=+.|...+.-.--+.++| +++-|
T Consensus 844 ----eqlyiti~~p~~aiqmydk~--------~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 844 ----EQLYITIGEPDKAIQMYDKH--------GLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred ----hheeEEccCchHHHHHHHhh--------CcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 12344455555556555433 455667888899999999888777777775544455555 36778
Q ss_pred HHHHHHHHhhccHHHHHHHHHh-cCchhhcchhh-------HHHHHhh-hhhHHHHHHHHHHHhhCc
Q 000428 1373 KELTYLYIQYDEFDNAATTIMN-HSPEAWDHMQF-------KDVAVKV-ANVELYYKAVHFYLQEHP 1430 (1520)
Q Consensus 1373 ~E~vfLy~~~~e~d~A~~~mi~-h~~~a~~h~~f-------k~ii~kv-an~elyYkai~FyL~~~P 1430 (1520)
+-+|-.|-..+-|..|-.+--- +-.++-.|..| -|-.+|+ ...-+.--+|.|--+...
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~a 978 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCA 978 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccc
Confidence 8888888888888777754322 22333333333 2333333 222234456666665544
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.12 E-value=2.9e-06 Score=97.36 Aligned_cols=228 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCc----HHHHH----HHHHhhhhHHHHHHHHHH-----hCChhHHHHHHHHHHhhc
Q 000428 1068 AVGEVAVEAQLYEEAFAIFKKF-NLN----VQAVN----VLLDNIRSIERAVEFAFR-----VEEDAVWSQVAKAQLREG 1133 (1520)
Q Consensus 1068 ~IA~ia~e~~L~EEA~~LYkK~-~~~----~~Ai~----vLi~~~~~~~~A~e~Aek-----~~~~eVw~~lgka~l~~~ 1133 (1520)
.+|+.....|.+++|..++++. ... +...- .|-...++++.|.+.-++ ...+..+.+++.. +..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4466666777777777777431 111 11111 111122234433333332 3456666776666 5666
Q ss_pred cHHHHHHHHH----hcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhc---CCcchhHHHHHHHHhhCChhhHHHHhc-
Q 000428 1134 LVSDAIESFI----RADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKV---KEPKVDSELIYAYAKIDRLGDIEEFIL- 1205 (1520)
Q Consensus 1134 ~v~eAI~~Yi----ka~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~---~ep~id~~lv~~yAk~~~l~ele~fl~- 1205 (1520)
+.++|++.+. +.++|......+..+...++++.+.++|..+.... .+|.+=..++.++.+.|+..+...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777776544 34666777777777778888888888877655321 122222235566677777777755543
Q ss_pred ----CcCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHH
Q 000428 1206 ----MPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCF 1272 (1520)
Q Consensus 1206 ----~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~ 1272 (1520)
.|++.++ ...+..+++.|+++.|+...+... -|..+|.+|..+|++++|++..+++-..
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-------- 243 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-------- 243 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--------
Confidence 3666665 567777888888877666665432 3466788888888888888777773310
Q ss_pred HHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1273 ACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1273 acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
..++ |.-+..+...++..|.+++|..+++++.
T Consensus 244 ---~p~d--------------~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 ---NPDD--------------PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---STT---------------HHHHHHHHHHHT----------------
T ss_pred ---cccc--------------cccccccccccccccccccccccccccc
Confidence 0111 1114466677888888888888888775
No 40
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=98.11 E-value=1.1e-06 Score=64.66 Aligned_cols=24 Identities=46% Similarity=0.753 Sum_probs=21.1
Q ss_pred cCccccchhcccCCHHHHHHHHHh
Q 000428 344 EATIVPFVSGQLNNLELAVNLAKR 367 (1520)
Q Consensus 344 ~~~ivpyi~~~l~n~~la~~la~r 367 (1520)
|++|||||.++|+|++||++||+|
T Consensus 1 e~~IVpyi~~~L~N~~LAl~lA~R 24 (24)
T PF09268_consen 1 EENIVPYILNTLQNPDLALRLASR 24 (24)
T ss_dssp TTTHHHHHHHTT--HHHHHHHHHH
T ss_pred CccchhHHHhccCCHHHHHHHhcC
Confidence 689999999999999999999998
No 41
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0013 Score=83.76 Aligned_cols=182 Identities=15% Similarity=0.210 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHH
Q 000428 1064 FDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFI 1143 (1520)
Q Consensus 1064 yd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yi 1143 (1520)
-|-.....+..+..||+-|+.|=|+.+.-.+++ .++.-++|...-..|..++|.+.||
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~----------------------~~i~~kYgd~Ly~Kgdf~~A~~qYI 392 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLDEDTL----------------------AEIHRKYGDYLYGKGDFDEATDQYI 392 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHH----------------------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344444444556666666666666543322222 2344456666666899999999999
Q ss_pred hcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHH-HHHHHHhhCChhhHHHHhcCcC----cchHHHHHhh
Q 000428 1144 RADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSE-LIYAYAKIDRLGDIEEFILMPN----VANLQNVGDR 1218 (1520)
Q Consensus 1144 ka~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~-lv~~yAk~~~l~ele~fl~~~N----~a~v~~vgd~ 1218 (1520)
++=....-++||.-..++..-.+|..||..--++.....=.+. |+.||.|.++.+.|.+||+... ..+++..=+.
T Consensus 393 ~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~I 472 (933)
T KOG2114|consen 393 ETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEI 472 (933)
T ss_pred HHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHH
Confidence 9977777889999999999999999999965555444333333 9999999999999999998766 6678888889
Q ss_pred hhccccHHHHHHHHHhhcCHHHH-HHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1219 LYDDTLYEAAKIIYAFISNWAKL-AVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1219 ~~eeg~YeaAk~~y~~~~N~~kL-A~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
|.+.+-++.|..+=+...+.-.. -.++..+++|++|+.+-.+..-+.+-
T Consensus 473 lr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l 522 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELL 522 (933)
T ss_pred HHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHH
Confidence 99999999999998888874444 44555599999999999987766554
No 42
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0006 Score=86.10 Aligned_cols=264 Identities=15% Similarity=0.267 Sum_probs=167.6
Q ss_pred CChhhhhhcCCCCChHH--HHHHHhhcCCceEEEEeecccchHHHhhhcccchHHHHHHHHHHHcCCHHHHHHHhcCc--
Q 000428 902 NNPEHFLTTNPYYDSRV--VGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLTPE-- 977 (1520)
Q Consensus 902 ~~pE~fL~~n~~yd~~v--Vgk~Ce~~dp~la~l~y~~g~~d~~LI~v~~~n~~fk~~a~ylvk~~~~~lw~~vl~~~-- 977 (1520)
.+-..|++--+-|.+.+ +-..|..-.|++.-- ++.+.....|..+.....+|..+-+-..+-++.++..-.....
T Consensus 468 ~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~ 546 (846)
T KOG2066|consen 468 SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLF 546 (846)
T ss_pred HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhH
Confidence 34467887777666666 444555444443221 2335555667777766667766666666667777665544311
Q ss_pred chHHHHHHHHHHh------ccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCc
Q 000428 978 NEYRRQLIDQVVS------TALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADP 1051 (1520)
Q Consensus 978 n~~r~~lidqv~~------~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~ 1051 (1520)
+..|.+.+.+.+- ..+-...+....+.+|..+. .-|..|-..|-+....+. |.- .-.++..|.-..++|.
T Consensus 547 d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~--~~P~~l~~YL~kl~~rd~-~~~-~~y~dk~I~LYAEyDr 622 (846)
T KOG2066|consen 547 DQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLE--DNPKLLYCYLHKLFKRDH-FMG-SEYHDKQIELYAEYDR 622 (846)
T ss_pred HHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHh--cChHHHHHHHHHHhhcCc-ccc-chhhhHHHHHHHHHhH
Confidence 1222222211100 00111122334566666666 445444444444331121 222 2244577766689999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHh
Q 000428 1052 SRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLR 1131 (1520)
Q Consensus 1052 ~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~ 1131 (1520)
.+|-.++++-.||+..+-+++|.+.|.++|-++|.-|-|...+|++++|+...++++|++|+..-+++|+|--
T Consensus 623 k~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~------- 695 (846)
T KOG2066|consen 623 KKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWED------- 695 (846)
T ss_pred hhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred hccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH---HHHHHHH
Q 000428 1132 EGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS---ELIYAYA 1192 (1520)
Q Consensus 1132 ~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~---~lv~~yA 1192 (1520)
.|.+.++ -|+.+..+...-+. .++|.-.|++..+..|++ .|+...+
T Consensus 696 ------LI~~~ld--kPe~~~~ll~i~~~-------~dpl~ii~kip~g~~IPnLrdsl~Kil~ 744 (846)
T KOG2066|consen 696 ------LINYSLD--KPEFIKALLNIGEH-------EDPLLIIRKIPDGLEIPNLRDSLVKILQ 744 (846)
T ss_pred ------HHHHhhc--CcHHHHHHHHhhhc-------ccHHHHHhcCCCCCCCccHHHHHHHHHH
Confidence 6766654 67777777442222 334444456544444433 3554433
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.04 E-value=0.0009 Score=72.29 Aligned_cols=237 Identities=10% Similarity=0.127 Sum_probs=150.0
Q ss_pred cccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccC-CceeEEEeccCC-eEEEEe-cCcEEEEeccCCCCccc
Q 000428 70 SALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMS-EQVVFWKWISPK-MLGVVT-QTSVYHWSIEGDSEPVK 146 (1520)
Q Consensus 70 sAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~-e~vvfWkWis~~-~l~lVT-~~aVyHW~i~~~~~P~k 146 (1520)
+.-.+|..+.++.=+. ...+.+|++++.+.++..... .++..=.|.... .|+.++ +..|+.|++.+. .+..
T Consensus 14 ~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-~~~~ 87 (289)
T cd00200 14 CVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-ECVR 87 (289)
T ss_pred EEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-cceE
Confidence 3446777677766433 578999999988766665543 345577888766 666666 789999999753 3333
Q ss_pred hhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecc-cccccccchhhccceeeecCCCCCCceE
Q 000428 147 MFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVD-QQRSQALEAHAASFAQFKVPGNENPSVL 225 (1520)
Q Consensus 147 ~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~e-r~~sQ~ieghaa~F~~~~~~g~~~~~~l 225 (1520)
.|.-|. ..|..-..+++.+.++..+ -.|.+.+|..+ .+..+.+.+|...-..+.+..+ ..+
T Consensus 88 ~~~~~~----~~i~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ 149 (289)
T cd00200 88 TLTGHT----SYVSSVAFSPDGRILSSSS-----------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD---GTF 149 (289)
T ss_pred EEeccC----CcEEEEEEcCCCCEEEEec-----------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc---CCE
Confidence 343221 2566666777755443333 26889999987 5566777788766666655443 344
Q ss_pred EEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhh
Q 000428 226 ISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAA 305 (1520)
Q Consensus 226 ~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~ 305 (1520)
++.+. .. +.+++.++.....-..| . ...+...++.+++.-..+++.+..|.+++||+.++.+
T Consensus 150 l~~~~---~~----~~i~i~d~~~~~~~~~~-------~----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 150 VASSS---QD----GTIKLWDLRTGKCVATL-------T----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEc---CC----CcEEEEEccccccceeE-------e----cCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 44443 12 57999988532111011 1 1234567788888877899999999999999999888
Q ss_pred hhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecCccc
Q 000428 306 VYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIV 348 (1520)
Q Consensus 306 i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~~iv 348 (1520)
+..-+....+|...+.+++..=+++.+.+|.|.-..++....+
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 7766555555555554444222333334888877777654443
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.03 E-value=0.0022 Score=82.38 Aligned_cols=309 Identities=18% Similarity=0.206 Sum_probs=186.7
Q ss_pred cCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcch
Q 000428 1076 AQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQ 1150 (1520)
Q Consensus 1076 ~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~ 1150 (1520)
.+|.-+|=.+|-+ |+.++|..++++ .+.-+.+ .++=||.||..|...|+.+++..+++.| +|++.
T Consensus 140 ~~ll~eAN~lfar-g~~eeA~~i~~E-------vIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-GDLEEAEEILME-------VIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHH-------HHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 3556677788877 788888888776 2333333 7778888888888888888888887776 44444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchh---HHHHHHHHhhCChhhH-HHHhcC----c------CcchHHHHH
Q 000428 1151 FLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVD---SELIYAYAKIDRLGDI-EEFILM----P------NVANLQNVG 1216 (1520)
Q Consensus 1151 ~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id---~~lv~~yAk~~~l~el-e~fl~~----~------N~a~v~~vg 1216 (1520)
..-|-....+.|++..-.=+...|-+ .+|.-= -+-...|-|+|.+... +.|+.- + +..-+..+.
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~--~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQ--ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 44566666667777666666664333 333221 1233456777777665 666442 2 112223344
Q ss_pred hhhhccccHHHHHHHHH-hhc---------CHHHHHHHHHHhcCHHHHHHHHHHhCC------hhhHH------------
Q 000428 1217 DRLYDDTLYEAAKIIYA-FIS---------NWAKLAVTLVKLKQFQGAVDAARKANS------AKTWK------------ 1268 (1520)
Q Consensus 1217 d~~~eeg~YeaAk~~y~-~~~---------N~~kLA~~lv~L~~y~~Ave~AkKa~~------~k~wk------------ 1268 (1520)
......++-+.|..... .++ ++.=+|.+|.++++|+.|...-.+-.+ +.-|-
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 55555555555544433 222 566679999999999999876554333 44451
Q ss_pred -----------HHHH--HHh---cchhhhHHHhh-----ccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccc
Q 000428 1269 -----------EVCF--ACV---DAEEFRLAQIC-----GLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAH 1327 (1520)
Q Consensus 1269 -----------~v~~--acv---~~~e~rLA~~~-----gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh 1327 (1520)
.||. .|+ +..+.--+-.+ .....-++|.+-++.+.|-+.|++.+|+.||-...+.+..-
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 0212 222 11111111111 11122345777899999999999999999999998888664
Q ss_pred -cchhHHHHHHHhccChhhhHHHHHH-HHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHh--------cCc
Q 000428 1328 -MGIFTELGVLYARYRYEKLMEHIKL-FSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMN--------HSP 1397 (1520)
Q Consensus 1328 -~~~fTeLailyAky~pekLmehlk~-y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~--------h~~ 1397 (1520)
-+.|+-+|.+|=.- +. +++... |...++.. +.....=--+.-||.+.|++++|+.++.. ...
T Consensus 448 ~~~vw~~~a~c~~~l--~e-~e~A~e~y~kvl~~~-----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 448 NAFVWYKLARCYMEL--GE-YEEAIEFYEKVLILA-----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred chhhhHHHHHHHHHH--hh-HHHHHHHHHHHHhcC-----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 35777777776432 22 333333 44444322 22333333456788899999999999876 134
Q ss_pred hhhcchh
Q 000428 1398 EAWDHMQ 1404 (1520)
Q Consensus 1398 ~a~~h~~ 1404 (1520)
.+|....
T Consensus 520 ~a~~~e~ 526 (895)
T KOG2076|consen 520 CAWEPER 526 (895)
T ss_pred ccccHHH
Confidence 5677665
No 45
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.00046 Score=85.40 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=151.8
Q ss_pred HHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhh-----CchHHHHHHHHHhCCChHHH--HHHHHHcCCHHH
Q 000428 1009 FMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKA-----DPSRVMDYVNRLDNFDGPAV--GEVAVEAQLYEE 1081 (1520)
Q Consensus 1009 f~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~-----d~~kl~~yI~~ldnyd~~~I--A~ia~e~~L~EE 1081 (1520)
|...+=.++|-.||-. .+|+.|-+=||+.+ |+.-+ .+++|+-..-..+. |++---.|.+||
T Consensus 685 fiEdnPHprLWrllAe-----------~Al~Kl~l~tAE~AFVrc~dY~Gi-k~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 685 FIEDNPHPRLWRLLAE-----------YALFKLALDTAEHAFVRCGDYAGI-KLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HHhcCCchHHHHHHHH-----------HHHHHHhhhhHhhhhhhhccccch-hHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 4444444666666633 35566777666543 33222 23455554444444 555556899999
Q ss_pred HHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHH-------hCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHH
Q 000428 1082 AFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFR-------VEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDV 1154 (1520)
Q Consensus 1082 A~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek-------~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~ev 1154 (1520)
|..+|-..++-|-||..-+. .++|-|-++...- .....-|-.+|...-+....++|.++|.+++|.+.+.+|
T Consensus 753 aek~yld~drrDLAielr~k-lgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ec 831 (1189)
T KOG2041|consen 753 AEKLYLDADRRDLAIELRKK-LGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIEC 831 (1189)
T ss_pred hhhhhhccchhhhhHHHHHh-hhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHH
Confidence 99999999999999987665 3578777766553 344567889999999988999999999999999999888
Q ss_pred HHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHh
Q 000428 1155 IRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAF 1234 (1520)
Q Consensus 1155 i~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~ 1234 (1520)
.+..+.-|..|-|.+=|- .++.=+..+|+...+-|+-+.|...|-.
T Consensus 832 ly~le~f~~LE~la~~Lp----------------------------------e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLP----------------------------------EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHHHHHHhcC----------------------------------cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 877664433333322222 1111146778888889999999999999
Q ss_pred hcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1235 ISNWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1235 ~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
.+.--....+.++|++|.+|||+|++-.-+.+-
T Consensus 878 ~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 878 RSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 999988999999999999999999997777655
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.012 Score=76.25 Aligned_cols=330 Identities=16% Similarity=0.191 Sum_probs=204.6
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHh--hccHHHHHHHHHhc--CCcchHH----HHHHHHHhcCChhHHHHHHHHHhhhc
Q 000428 1107 ERAVEFAFRVEEDAVWSQVAKAQLR--EGLVSDAIESFIRA--DDATQFL----DVIRAAEDADVYHDLVRYLLMVRQKV 1178 (1520)
Q Consensus 1107 ~~A~e~Aek~~~~eVw~~lgka~l~--~~~v~eAI~~Yika--~d~s~~~----evi~~a~~a~~~e~Li~yL~m~r~~~ 1178 (1520)
+....+.-+-.-+.+-+.||+|-+. .+++..|+.+|.++ -+|.+-. -+-.|.-+.++.+.-+.=.. |..-
T Consensus 150 ~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~--ralq 227 (1018)
T KOG2002|consen 150 DAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE--RALQ 227 (1018)
T ss_pred HHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH--HHHh
Confidence 3566677788889999999999855 78999999999995 3333333 33555555555544211111 2334
Q ss_pred CCcchhHH-HHHHHHhhCC---------hhhH-HHHhcCcCcchH-HHHHhhhhccccHHHHHHHHHhhc----------
Q 000428 1179 KEPKVDSE-LIYAYAKIDR---------LGDI-EEFILMPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS---------- 1236 (1520)
Q Consensus 1179 ~ep~id~~-lv~~yAk~~~---------l~el-e~fl~~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~---------- 1236 (1520)
.||..-.. ++..+-+... +..+ ..|=..++++.+ .-++..+|..|+|+.+-.++...-
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 56643332 3333333221 1122 334334666666 559999999999999998886433
Q ss_pred -CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHH
Q 000428 1237 -NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELIS 1315 (1520)
Q Consensus 1237 -N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~ 1315 (1520)
+|..+|++|=..|+|++|-.++.+|-. | +.+.|-|+.. +|+.-|..+|..++++.
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k----------~-~~d~~~l~~~-------------GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLK----------A-DNDNFVLPLV-------------GLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHc----------c-CCCCcccccc-------------chhHHHHHhchHHHHHH
Confidence 699999999999999999998877321 1 1223566643 88999999999999999
Q ss_pred HHHhhcCccccccchhHHHHHHHhcc-----ChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhcc------
Q 000428 1316 LMESGLGLERAHMGIFTELGVLYARY-----RYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDE------ 1384 (1520)
Q Consensus 1316 Lle~gl~lerAh~~~fTeLailyAky-----~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e------ 1384 (1520)
.||+.+......+-.---||-+||.+ +.++-.+++....... ..+...|.++.+||...+-
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--------~~d~~a~l~laql~e~~d~~~sL~~ 435 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--------PVDSEAWLELAQLLEQTDPWASLDA 435 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHhcChHHHHHH
Confidence 99999754444333333499999999 4566666666644433 3345568888888776553
Q ss_pred HHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCcchHHHHHHHHhh---cCCHHHHHHHHHhcCCccc
Q 000428 1385 FDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLAL---RVDHTRVVDIMRKAGHLLL 1461 (1520)
Q Consensus 1385 ~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~l~~---rlD~~rvV~~~~k~~~ipL 1461 (1520)
|.+|+.+++.+- +..=.|++-.++ +..|.+..-+.-..-+..++.. ..|++-- + .+-+
T Consensus 436 ~~~A~d~L~~~~-----~~ip~E~LNNva-------slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-----~--~~~l 496 (1018)
T KOG2002|consen 436 YGNALDILESKG-----KQIPPEVLNNVA-------SLHFRLGNIEKALEHFKSALGKLLEVANKDEG-----K--STNL 496 (1018)
T ss_pred HHHHHHHHHHcC-----CCCCHHHHHhHH-------HHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-----c--cchh
Confidence 346666666661 111223333333 3344443333333333233322 2233211 0 1111
Q ss_pred hHHHHHHHhhcChHHHHHHHHHHhhhhhhhHHHHH
Q 000428 1462 VKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRE 1496 (1520)
Q Consensus 1462 ik~yL~~vq~~n~~~Vneal~~l~ieeed~~~Lr~ 1496 (1520)
. -.-|...++|++.+.=.-++-|.+.-.
T Consensus 497 t-------~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 497 T-------LKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred H-------HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1 356888999999999999999987655
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.025 Score=68.78 Aligned_cols=357 Identities=17% Similarity=0.158 Sum_probs=231.7
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHhhcCCcchHHHHHHHHHHHhcCCCh--hh-hhhc---CCCCChHH--HHHHHhhcCCc
Q 000428 858 PLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNP--EH-FLTT---NPYYDSRV--VGKYCEKRDPT 929 (1520)
Q Consensus 858 eLv~~~E~R~rl~~L~~~LE~~l~eg~~d~~l~~alakiyid~~~~p--E~-fL~~---n~~yd~~v--Vgk~Ce~~dp~ 929 (1520)
.++..-+.++-|.+|-..||+.=-.|..|+-+.+-.|+|+-+.++.- ++ |.+- -+.+|+.- ++..|-+.+-.
T Consensus 135 ~~~~~~~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~ 214 (559)
T KOG1155|consen 135 RLESFSRINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL 214 (559)
T ss_pred cchhhhhhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH
Confidence 35666677888999999999999999999999999999996655532 22 2221 24556554 45544432210
Q ss_pred eEEEEeecccchHHHhhhccc-chHHHHHHHHHHHcCCHHHHHHHhcCcchHHHHHHHHHHhccCCCCCCchhHHHHHHH
Q 000428 930 LAVVAYRRGQCDDELINVTNK-NSLFKLQARYVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKA 1008 (1520)
Q Consensus 930 la~l~y~~g~~d~~LI~v~~~-n~~fk~~a~ylvk~~~~~lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vka 1008 (1520)
+.++.-... .-.++. +++.++ |...-+ .++ +++=-.++++.++|.+ .-+++
T Consensus 215 ------------~~l~~~l~~~~h~M~~--~F~~~a-----~~el~q-~~e-~~~k~e~l~~~gf~~~-------~~i~~ 266 (559)
T KOG1155|consen 215 ------------SILVVGLPSDMHWMKK--FFLKKA-----YQELHQ-HEE-ALQKKERLSSVGFPNS-------MYIKT 266 (559)
T ss_pred ------------HHHHhcCcccchHHHH--HHHHHH-----HHHHHH-HHH-HHHHHHHHHhccCCcc-------HHHHH
Confidence 001100100 111111 112221 222221 111 2232336666677765 22222
Q ss_pred HH---hCCC--CHHHHHHHHHhhhc-CCCccccchhhhHHHHHHHhhCchHHH---HHHHHHhCCChHHH---HHHHHHc
Q 000428 1009 FM---TADL--PHELIELLEKIVLQ-NSAFSGNFNLQNLLILTAIKADPSRVM---DYVNRLDNFDGPAV---GEVAVEA 1076 (1520)
Q Consensus 1009 f~---~a~l--p~eLi~lLekivl~-~~~fs~N~~LqnLlIlta~k~d~~kl~---~yI~~ldnyd~~~I---A~ia~e~ 1076 (1520)
.. +.+. ...-+++.|-|..+ +=.-.+=+.+-|.|- +|.|.+||. .-+-..|+|-+..- |+.-.-.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY---v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY---VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH---HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 22 1111 14556667766644 111112223344555 788888874 45556778876653 5555556
Q ss_pred CCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH--
Q 000428 1077 QLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL-- 1152 (1520)
Q Consensus 1077 ~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~-- 1152 (1520)
+.+|.|+.-|++ |...-.+ -..+|-.+|..|........||++|=+| =||.+|.
T Consensus 344 ~eHEKAv~YFkR--------------------ALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 344 SEHEKAVMYFKR--------------------ALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HhHHHHHHHHHH--------------------HHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 666777776666 3333333 5678999999999999999999999988 6777777
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHhh-hcCCcchhHHHHHHHHhhCChhhHHH-H-----hcCcCcchHHHHHhhhhcccc
Q 000428 1153 -DVIRAAEDADVYHDLVRYLLMVRQ-KVKEPKVDSELIYAYAKIDRLGDIEE-F-----ILMPNVANLQNVGDRLYDDTL 1224 (1520)
Q Consensus 1153 -evi~~a~~a~~~e~Li~yL~m~r~-~~~ep~id~~lv~~yAk~~~l~ele~-f-----l~~~N~a~v~~vgd~~~eeg~ 1224 (1520)
.+-++..-.++|.--.-|.+.|-+ +..||++=..|+.||-|++++.+... | ..++|...+-.+|+.+.+.++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 677777778999999999998877 58999999999999999999999954 4 334666777899999999999
Q ss_pred HHHHHHHHHhhcCH---------------HHHHHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1225 YEAAKIIYAFISNW---------------AKLAVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1225 YeaAk~~y~~~~N~---------------~kLA~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
+++|...|...-.- .=||.-+.+.++|++|-.+|.++.+-.+-
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 99999999865421 11588888999999999998887766444
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.76 E-value=0.00079 Score=72.00 Aligned_cols=143 Identities=14% Similarity=0.057 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhc--CC---cchHHHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHHHHHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA--DD---ATQFLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSELIYAY 1191 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika--~d---~s~~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~lv~~y 1191 (1520)
.+..|+.+|..+...|+.++|++.|.++ .+ +..+......+...|++++-+++++.+-.. ..++..-..++.+|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4677888888888888888888888765 22 333345556666677777777777765543 22222222356666
Q ss_pred HhhCChhhHHHHhcC----c---Ccc-hHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHH
Q 000428 1192 AKIDRLGDIEEFILM----P---NVA-NLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAV 1255 (1520)
Q Consensus 1192 Ak~~~l~ele~fl~~----~---N~a-~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Av 1255 (1520)
...|++.+...++.. + ... ....+|..++..|+++.|...|...- -+..+|.++...|++++|+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666544322 1 111 22446666666666666666665432 2445666777777777777
Q ss_pred HHHHH
Q 000428 1256 DAARK 1260 (1520)
Q Consensus 1256 e~AkK 1260 (1520)
+..++
T Consensus 190 ~~~~~ 194 (234)
T TIGR02521 190 AYLER 194 (234)
T ss_pred HHHHH
Confidence 66665
No 49
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.014 Score=69.53 Aligned_cols=227 Identities=13% Similarity=0.097 Sum_probs=141.2
Q ss_pred chhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHH
Q 000428 1036 FNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFR 1115 (1520)
Q Consensus 1036 ~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek 1115 (1520)
+.-++|+..++...|++-|.+|...-|+|. +.|....+.. +.- ...++-+. .+..|.+.-.+
T Consensus 82 p~a~~l~~~~~r~~~~~~L~~~y~q~d~~~--~~a~~~l~~~-----~~~----~~~~~~~~-------~L~~a~~~y~~ 143 (319)
T PF04840_consen 82 PVASNLYKKYCREQDRELLKDFYYQEDRFQ--ELANLHLQEA-----LSQ----KDVEEKIS-------FLKQAQKLYSK 143 (319)
T ss_pred cchHHHHHHHHHhccHHHHHHHHHhcchHH--HHHHHHHHHH-----HhC----CChHHHHH-------HHHHHHHHHHh
Confidence 334678887765578888888888888774 4443333211 100 01110000 11222222222
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHH-HHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhh
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIES-FIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKI 1194 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~-Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~ 1194 (1520)
..+.....++..-+.+..++.+.++- |-..=.-....+++..|-..|+....-++-.. .++-|.+.-..-+.+|++.
T Consensus 144 ~k~~~f~~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~--Fkv~dkrfw~lki~aLa~~ 221 (319)
T PF04840_consen 144 SKNDAFEAKLIEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE--FKVPDKRFWWLKIKALAEN 221 (319)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHHhc
Confidence 22323333333323222222222221 10000001233666666666665433333221 2466667767789999999
Q ss_pred CChhhHHHHhcCcC-cchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHH
Q 000428 1195 DRLGDIEEFILMPN-VANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFA 1273 (1520)
Q Consensus 1195 ~~l~ele~fl~~~N-~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~a 1273 (1520)
+++++|+.|-.+.. .-+++..-+.|++.|....|......+.+ ..-+..|+++|+|.+|++.|.+.++....+++...
T Consensus 222 ~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~ 300 (319)
T PF04840_consen 222 KDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKR 300 (319)
T ss_pred CCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987533 33558899999999999999999999888 88999999999999999999999999999999999
Q ss_pred HhcchhhhHH
Q 000428 1274 CVDAEEFRLA 1283 (1520)
Q Consensus 1274 cv~~~e~rLA 1283 (1520)
|-.+.+-..|
T Consensus 301 ~~~~~~~~~~ 310 (319)
T PF04840_consen 301 CPGNNDQLIA 310 (319)
T ss_pred CCCCChHHHH
Confidence 9876655553
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.75 E-value=0.0014 Score=70.19 Aligned_cols=170 Identities=14% Similarity=0.064 Sum_probs=115.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc---
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--- 1145 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--- 1145 (1520)
+|..+...|.+++|...|.+ +++. .-+.+..|+.+|..+...|+.++|+..|-++
T Consensus 37 la~~~~~~~~~~~A~~~~~~--------------------~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDK--------------------ALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHH--------------------HHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666667777777776665 1111 1235678888888888888888888888776
Q ss_pred --CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCC---cchhHHHHHHHHhhCChhhHHHHhcC-----cCcch-HHH
Q 000428 1146 --DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKE---PKVDSELIYAYAKIDRLGDIEEFILM-----PNVAN-LQN 1214 (1520)
Q Consensus 1146 --~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~e---p~id~~lv~~yAk~~~l~ele~fl~~-----~N~a~-v~~ 1214 (1520)
+++..+.....++...|++++-++++..+-..... +..-..++.+|.+.|++.+...++.. ++... ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 33334445666777788888888888876543211 22223477888888998888666432 33333 367
Q ss_pred HHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1215 VGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1215 vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.|..++..|+|+.|...+...- -+.-++.++...|++++|..+..+
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999999998888652 233457777788888888877655
No 51
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0041 Score=77.46 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchh
Q 000428 1105 SIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVD 1184 (1520)
Q Consensus 1105 ~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id 1184 (1520)
-+++|++|+++..-|.+|..||.+-+....+.-|-..|++++|-. -|++.+..|++
T Consensus 678 gledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-----------------Gik~vkrl~~i------- 733 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-----------------GIKLVKRLRTI------- 733 (1189)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-----------------chhHHHHhhhh-------
Confidence 577899999999999999999999999888888999999977621 24444443333
Q ss_pred HHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCC
Q 000428 1185 SELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANS 1263 (1520)
Q Consensus 1185 ~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~ 1263 (1520)
..|.-+-+++..| -|.||+|-.+|-..+--+=..-.+.++|+|-.-+++.|.-.+
T Consensus 734 ------~s~~~q~aei~~~------------------~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~ 788 (1189)
T KOG2041|consen 734 ------HSKEQQRAEISAF------------------YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGS 788 (1189)
T ss_pred ------hhHHHHhHhHhhh------------------hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCC
Confidence 1222222444455 477888888887777666556677778888888888887543
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.68 E-value=0.0066 Score=74.00 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=68.6
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc---CHHHHHHHHHH--hcCHHHHHHHHHHh-----CChhhHHHHHHHHhcchhhhH
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS---NWAKLAVTLVK--LKQFQGAVDAARKA-----NSAKTWKEVCFACVDAEEFRL 1282 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~---N~~kLA~~lv~--L~~y~~Ave~AkKa-----~~~k~wk~v~~acv~~~e~rL 1282 (1520)
..++..+...|+++.|.......- ....++..|.+ .++.++|.+.+++. +++...-.....|+..+++..
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 557777777777777777666443 23345555554 37777777776432 122233344566777777777
Q ss_pred HHhhccc-cccccccH--HHHHHHHHhcCCHHHHHHHHHhhcCc
Q 000428 1283 AQICGLN-IIVQVDDL--EEVSEYYQNRGYFNELISLMESGLGL 1323 (1520)
Q Consensus 1283 A~~~gl~-li~~~d~l--~elv~~Ye~~G~f~eLI~Lle~gl~l 1323 (1520)
|+...-. +-.+|+.- -.+...+++.|..+++..+|++|+.+
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6643322 22234332 47788888899999999999888654
No 53
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.0053 Score=71.45 Aligned_cols=209 Identities=16% Similarity=0.194 Sum_probs=116.4
Q ss_pred cCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHH
Q 000428 1076 AQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVI 1155 (1520)
Q Consensus 1076 ~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi 1155 (1520)
.++|+.|...|+.-+.|++|.... .+|.+.-.+.+++. .-|++ +.+|..+|.+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay-------~kAa~~~~~~~~~~---~Aa~~------~~~Aa~~~k~----------- 87 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAY-------EKAADCYEKLGDKF---EAAKA------YEEAANCYKK----------- 87 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHH-------HHHHHHHHHTT-HH---HHHHH------HHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhccchhHHHH-------HHHHHHHHHcCCHH---HHHHH------HHHHHHHHHh-----------
Confidence 345566777777777777777643 33555555533322 12222 3345555555
Q ss_pred HHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhcc-ccHHHHHHHHHh
Q 000428 1156 RAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDD-TLYEAAKIIYAF 1234 (1520)
Q Consensus 1156 ~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~ee-g~YeaAk~~y~~ 1234 (1520)
.+|++-+++++.|.. .|.+.|+....-.. ...+|+.+.+. |+|+.|...|..
T Consensus 88 ------~~~~~Ai~~~~~A~~-------------~y~~~G~~~~aA~~--------~~~lA~~ye~~~~d~e~Ai~~Y~~ 140 (282)
T PF14938_consen 88 ------GDPDEAIECYEKAIE-------------IYREAGRFSQAAKC--------LKELAEIYEEQLGDYEKAIEYYQK 140 (282)
T ss_dssp ------TTHHHHHHHHHHHHH-------------HHHHCT-HHHHHHH--------HHHHHHHHCCTT--HHHHHHHHHH
T ss_pred ------hCHHHHHHHHHHHHH-------------HHHhcCcHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467777777775433 36667776655443 46788889888 899999888887
Q ss_pred hcC--------------HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHH
Q 000428 1235 ISN--------------WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEV 1300 (1520)
Q Consensus 1235 ~~N--------------~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~el 1300 (1520)
.-. +.++|.+++++|+|++|+++..+. ...|.+++-.+.. -++.+-..
T Consensus 141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~---------~~~~l~~~l~~~~---------~~~~~l~a 202 (282)
T PF14938_consen 141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV---------AKKCLENNLLKYS---------AKEYFLKA 202 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH---------HHTCCCHCTTGHH---------HHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------HHHhhcccccchh---------HHHHHHHH
Confidence 663 345699999999999999988772 3334433322210 00112222
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCccc--cc---cchhHHHHHHHhccChhhhHHHHHHHHHh
Q 000428 1301 SEYYQNRGYFNELISLMESGLGLER--AH---MGIFTELGVLYARYRYEKLMEHIKLFSTR 1356 (1520)
Q Consensus 1301 v~~Ye~~G~f~eLI~Lle~gl~ler--Ah---~~~fTeLailyAky~pekLmehlk~y~~~ 1356 (1520)
+-++-..|....+-..+++..+.+. .+ ..+--.|.-+|=.-+++.+-++++.|.+-
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3344556777777777777654432 11 11122345555566666666666665443
No 54
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0033 Score=82.24 Aligned_cols=232 Identities=18% Similarity=0.235 Sum_probs=164.5
Q ss_pred HHHHHHHHHhcCC--ChhhhhhcCCCCChHHHHHHHhhcCC--ceEEEEeecccchHH---Hhhhccc--------chHH
Q 000428 890 HNALGKIIIDSNN--NPEHFLTTNPYYDSRVVGKYCEKRDP--TLAVVAYRRGQCDDE---LINVTNK--------NSLF 954 (1520)
Q Consensus 890 ~~alakiyid~~~--~pE~fL~~n~~yd~~vVgk~Ce~~dp--~la~l~y~~g~~d~~---LI~v~~~--------n~~f 954 (1520)
=|+|-|+|..+|- ..+.+..+|+.-+.+.+-..-++.+. .|+.+|+.+|.-+.+ +.+.+.+ ...+
T Consensus 466 DttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~ 545 (877)
T KOG2063|consen 466 DTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGL 545 (877)
T ss_pred HHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhH
Confidence 4678888865543 33566667778999999888888884 899999999988888 3455542 2456
Q ss_pred HHHHHHHHHcCCH--HH-HHH--HhcCcchHHHHHHHHHHhccCC---CCCCchhHHHHHHHHHhCCCCHHHHHHHHHhh
Q 000428 955 KLQARYVVERMDA--DL-WEK--VLTPENEYRRQLIDQVVSTALP---ESKSPEQVSAAVKAFMTADLPHELIELLEKIV 1026 (1520)
Q Consensus 955 k~~a~ylvk~~~~--~l-w~~--vl~~~n~~r~~lidqv~~~alp---e~~~~~~vs~~Vkaf~~a~lp~eLi~lLekiv 1026 (1520)
+...+||.+..++ +| |.. .+-+.+| .+-+ ||+..-.+ ++-++++|= -|....-|.-+|..||+++
T Consensus 546 e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p--~~gi-~Ift~~~~~~~~sis~~~Vl----~~l~~~~~~l~I~YLE~li 618 (877)
T KOG2063|consen 546 EKIIEYLKKLGAENLDLILEYADWVLNKNP--EAGI-QIFTSEDKQEAESISRDDVL----NYLKSKEPKLLIPYLEHLI 618 (877)
T ss_pred HHHHHHHHHhcccchhHHHHHhhhhhccCc--hhhe-eeeeccChhhhccCCHHHHH----HHhhhhCcchhHHHHHHHh
Confidence 7899999999988 43 332 1113333 2222 34332112 344566543 3444455677788888888
Q ss_pred hcCCCccccchhhhHHHHHHHhhC-----------------chHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhc
Q 000428 1027 LQNSAFSGNFNLQNLLILTAIKAD-----------------PSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKF 1089 (1520)
Q Consensus 1027 l~~~~fs~N~~LqnLlIlta~k~d-----------------~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~ 1089 (1520)
..+ .+..+.-..-|+.+++.+.+ .+|+.++....+-||+..+-.-...+++|||-..++.|-
T Consensus 619 ~~~-~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl 697 (877)
T KOG2063|consen 619 SDN-RLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRL 697 (877)
T ss_pred Hhc-cccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhh
Confidence 664 33333334446777777777 788999999999999999888888899999999999999
Q ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHhC-----ChhHHHHHHHHH
Q 000428 1090 NLNVQAVNVLLDNIRSIERAVEFAFRVE-----EDAVWSQVAKAQ 1129 (1520)
Q Consensus 1090 ~~~~~Ai~vLi~~~~~~~~A~e~Aek~~-----~~eVw~~lgka~ 1129 (1520)
+++++|+.+++.-..+|+-|..|+..+- +.++|..+-+.+
T Consensus 698 ~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 698 GKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
Confidence 9999999999999989999999998643 355655533333
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0044 Score=74.06 Aligned_cols=234 Identities=16% Similarity=0.245 Sum_probs=160.4
Q ss_pred hHHHHHHHHHhCCCC--HHHHHHHHHhhhcCCCccccchhhhHHHHHHHhh--CchHHHHHHH---HHhCCChHHH---H
Q 000428 1001 QVSAAVKAFMTADLP--HELIELLEKIVLQNSAFSGNFNLQNLLILTAIKA--DPSRVMDYVN---RLDNFDGPAV---G 1070 (1520)
Q Consensus 1001 ~vs~~Vkaf~~a~lp--~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~--d~~kl~~yI~---~ldnyd~~~I---A 1070 (1520)
++..++..+.+.++. -|.+.++|+ . ..-+...+-+||-.|.-..- |...-..|-+ ..|+|++..+ +
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~---k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg 497 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEK---K-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG 497 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHh---c-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence 556677777776665 233334443 2 12344456677777665532 2222233433 5678888877 5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc-----
Q 000428 1071 EVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA----- 1145 (1520)
Q Consensus 1071 ~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika----- 1145 (1520)
+++--+|.++.|...||..=++|.+ =.+-.|.+|-.+...|++++|+++|.|-
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndas----------------------c~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDAS----------------------CTEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchH----------------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 5666689999999998883222211 1234567777777888888899998875
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhh-hcCCcchhHHHHHHHHhhCChhhHHHH-hcC-----cCcchHHHHHhh
Q 000428 1146 DDATQFLDVIRAAEDADVYHDLVRYLLMVRQ-KVKEPKVDSELIYAYAKIDRLGDIEEF-ILM-----PNVANLQNVGDR 1218 (1520)
Q Consensus 1146 ~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~-~~~ep~id~~lv~~yAk~~~l~ele~f-l~~-----~N~a~v~~vgd~ 1218 (1520)
++.+-..++..+.+-.++|..-|+||..+.. +-.||.|=+-|.-.|-+.|+....=.| -.+ +|.--++=+|-.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 5555555666667777888888999887765 477888877788888888876665322 222 666666779999
Q ss_pred hhccccHHHHHHHHHhhc----C---HH-HHHHHHHHhcCHHHHHHHHHH
Q 000428 1219 LYDDTLYEAAKIIYAFIS----N---WA-KLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1219 ~~eeg~YeaAk~~y~~~~----N---~~-kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
+++.+-.|.|...|+... | |- -+|+|+.+-|.||+|.+..|.
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999999998765 3 32 249999999999999999876
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.43 E-value=0.005 Score=77.04 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhc---------CC----cchHHHHHHHHHhcCChhHHHHHHHHHhhhc--------
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRA---------DD----ATQFLDVIRAAEDADVYHDLVRYLLMVRQKV-------- 1178 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yika---------~d----~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~-------- 1178 (1520)
.++..||.+|...|+++||-.++.+| .+ ++...++...+...+.+|+=++||+.+.++-
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 46777888888888898888887766 11 2334478888999999999999999999852
Q ss_pred -CCcchhHHHHHHHHhhCChhhHHHHhcC----------cCcc----hHHHHHhhhhccccHHHHHHHHHhhcC------
Q 000428 1179 -KEPKVDSELIYAYAKIDRLGDIEEFILM----------PNVA----NLQNVGDRLYDDTLYEAAKIIYAFISN------ 1237 (1520)
Q Consensus 1179 -~ep~id~~lv~~yAk~~~l~ele~fl~~----------~N~a----~v~~vgd~~~eeg~YeaAk~~y~~~~N------ 1237 (1520)
..+.+-..|.-.|-++|++.+.+++... .+.. .+..+|..|.+.+.|+.|-.+|....|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 2334444699999999999999888332 2222 346788899998888888777776554
Q ss_pred ---------HHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1238 ---------WAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1238 ---------~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
|..||-+|..+|+|+.|+++..++.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455999999999999999999943
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.40 E-value=0.0031 Score=73.81 Aligned_cols=150 Identities=14% Similarity=-0.008 Sum_probs=86.7
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcc---hHHHHHHHHHhcCChhHHHHHHHHHhhhc-CCcchhHHHHH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDAT---QFLDVIRAAEDADVYHDLVRYLLMVRQKV-KEPKVDSELIY 1189 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s---~~~evi~~a~~a~~~e~Li~yL~m~r~~~-~ep~id~~lv~ 1189 (1520)
-++++.|+.+|..+...|+.++|+..|-++ -+|+ .+.....+.+..|++++-++.+..+-+.. .+|. -....+
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~ 173 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLY 173 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 346788888888888888888888888777 3443 34455566677788888888888665532 2221 111122
Q ss_pred HHHhhCChhhHHHHhcC---cCcchHHHHHhhhhccccHH------HHHHHHHh--------hcCHHHHHHHHHHhcCHH
Q 000428 1190 AYAKIDRLGDIEEFILM---PNVANLQNVGDRLYDDTLYE------AAKIIYAF--------ISNWAKLAVTLVKLKQFQ 1252 (1520)
Q Consensus 1190 ~yAk~~~l~ele~fl~~---~N~a~v~~vgd~~~eeg~Ye------aAk~~y~~--------~~N~~kLA~~lv~L~~y~ 1252 (1520)
.....++.++..+.+.. ....+.-.++-..+..|++. .+...++. ..-|..||..|.++|+++
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 23344556666333311 11111111233333333332 22221111 124778999999999999
Q ss_pred HHHHHHHHhCChhh
Q 000428 1253 GAVDAARKANSAKT 1266 (1520)
Q Consensus 1253 ~Ave~AkKa~~~k~ 1266 (1520)
+|+.+.++|-...+
T Consensus 254 ~A~~~~~~Al~~~~ 267 (296)
T PRK11189 254 EAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999764443
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.38 E-value=0.14 Score=66.70 Aligned_cols=194 Identities=18% Similarity=0.169 Sum_probs=127.3
Q ss_pred cCCHHHHHHHHHhcCCcHHHHHHHHHhhh--h------HH-----H----HHHHHH--H-hCChhHHHHHHHHHHhhccH
Q 000428 1076 AQLYEEAFAIFKKFNLNVQAVNVLLDNIR--S------IE-----R----AVEFAF--R-VEEDAVWSQVAKAQLREGLV 1135 (1520)
Q Consensus 1076 ~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~--~------~~-----~----A~e~Ae--k-~~~~eVw~~lgka~l~~~~v 1135 (1520)
+..++....+|-|+..|+.|...+.+... + |+ + +..-+. . .+.+-+.-.++-+-|+.+..
T Consensus 316 ~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~ 395 (895)
T KOG2076|consen 316 LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKEREL 395 (895)
T ss_pred ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccch
Confidence 55566889999999999999998887543 0 11 0 000000 0 11222355666666778888
Q ss_pred HHHHHHHHhcCC------cchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCc
Q 000428 1136 SDAIESFIRADD------ATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNV 1209 (1520)
Q Consensus 1136 ~eAI~~Yika~d------~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~ 1209 (1520)
.+++.+|+--.| ++-|.++..+..+.|+|.+-++||...+.. |. -++
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~---~~------------------------~~~ 448 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR---EG------------------------YQN 448 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC---cc------------------------ccc
Confidence 888888876544 455667778888888888888888732211 10 122
Q ss_pred chH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhh
Q 000428 1210 ANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEF 1280 (1520)
Q Consensus 1210 a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~ 1280 (1520)
+.| ...|.++.+.|.|+.|..+|..+- +=.+||++|.++|+.++|+++-..--+++.- -.++|.-..+-
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~--~~e~~a~~~e~ 526 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR--NAEACAWEPER 526 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc--chhhccccHHH
Confidence 334 789999999999999999999654 5567899999999999999998774444422 22444444444
Q ss_pred hHHHhhccccccccccHHHHHHHHHhcCCHHH
Q 000428 1281 RLAQICGLNIIVQVDDLEEVSEYYQNRGYFNE 1312 (1520)
Q Consensus 1281 rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~e 1312 (1520)
|+ +-....-|.+.|.+++
T Consensus 527 ri--------------~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 527 RI--------------LAHRCDILFQVGKREE 544 (895)
T ss_pred HH--------------HHHHHHHHHHhhhHHH
Confidence 44 2344455666666665
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.38 E-value=0.00097 Score=76.71 Aligned_cols=242 Identities=16% Similarity=0.203 Sum_probs=80.9
Q ss_pred HHHHhcCcchHHHHHHHHHHhccCCCCCCchhH---HHHHHHHHhCCCCHHHHHHHHHhh-hcCCCccccchhhhHHHHH
Q 000428 970 WEKVLTPENEYRRQLIDQVVSTALPESKSPEQV---SAAVKAFMTADLPHELIELLEKIV-LQNSAFSGNFNLQNLLILT 1045 (1520)
Q Consensus 970 w~~vl~~~n~~r~~lidqv~~~alpe~~~~~~v---s~~Vkaf~~a~lp~eLi~lLekiv-l~~~~fs~N~~LqnLlIlt 1045 (1520)
|+.++-..+.++.++ +++..++....+|++. ........+.+-+++-+...++++ ...+.-.+ +++|.-+
T Consensus 14 ~A~~~~~~~~~~~Al--~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~---~~~l~~l- 87 (280)
T PF13429_consen 14 LARLLYQRGDYEKAL--EVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD---YERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccc-
Confidence 344444444444442 4543333333222222 112223334455567777777766 22222222 2233333
Q ss_pred HHhhCchHHHHHHHHHh-CCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHH
Q 000428 1046 AIKADPSRVMDYVNRLD-NFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQ 1124 (1520)
Q Consensus 1046 a~k~d~~kl~~yI~~ld-nyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~ 1124 (1520)
..+.+|.+-.++..+-. ++. ....+..+..+|.+.+.++++..++-+ +.....--.++.+|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~ 151 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG---------DPRYLLSALQLYYRLGDYDEAEELLEK-------LEELPAAPDSARFWLA 151 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHH-------HHH-T---T-HHHHHH
T ss_pred ccccccccccccccccccccc---------ccchhhHHHHHHHHHhHHHHHHHHHHH-------HHhccCCCCCHHHHHH
Confidence 25666666665554322 221 234445667777777777766655433 2222212358899999
Q ss_pred HHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHHHHHHHHhhCChh
Q 000428 1125 VAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSELIYAYAKIDRLG 1198 (1520)
Q Consensus 1125 lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~lv~~yAk~~~l~ 1198 (1520)
+|..+...|+.++|+..|-++ +|++-....+...-+.|+++++...|....+. ..+|.+-..++.+|.++|+..
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 999999999999999999887 44455556777777788888877777765554 466666666777777666666
Q ss_pred hHHHHhc-----CcCcchH-HHHHhhhhccccHHHHHHHHH
Q 000428 1199 DIEEFIL-----MPNVANL-QNVGDRLYDDTLYEAAKIIYA 1233 (1520)
Q Consensus 1199 ele~fl~-----~~N~a~v-~~vgd~~~eeg~YeaAk~~y~ 1233 (1520)
+.-.++. .++...+ ...|+.+...|.++.|..++.
T Consensus 232 ~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 232 EALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 6644422 1333333 445555555555555555443
No 60
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.36 E-value=0.0013 Score=81.35 Aligned_cols=160 Identities=17% Similarity=0.214 Sum_probs=115.1
Q ss_pred HhhCchHHHHHHHHHhCCC-------hHHHHHHHHHcCCHHHHHHHHHhc-CCcHHHHHHHHHhhhhHHHHHHHHHHhCC
Q 000428 1047 IKADPSRVMDYVNRLDNFD-------GPAVGEVAVEAQLYEEAFAIFKKF-NLNVQAVNVLLDNIRSIERAVEFAFRVEE 1118 (1520)
Q Consensus 1047 ~k~d~~kl~~yI~~ldnyd-------~~~IA~ia~e~~L~EEA~~LYkK~-~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~ 1118 (1520)
.+-|.+.++..| +-++.- ...+|...++.|.+|.|..+=+-- -+++-|++ - ++++.|.+.|.+.++
T Consensus 273 ~~~d~~~v~~~i-~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~----l-g~L~~A~~~a~~~~~ 346 (443)
T PF04053_consen 273 LRGDFEEVLRMI-AASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQ----L-GNLDIALEIAKELDD 346 (443)
T ss_dssp HTT-HHH------HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHH----C-T-HHHHHHHCCCCST
T ss_pred HcCChhhhhhhh-hhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHh----c-CCHHHHHHHHHhcCc
Confidence 344666776666 334444 778899999999999999876532 23444444 2 689999999999999
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChh
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLG 1198 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ 1198 (1520)
++.|-+||.+-+..|+++-|..+|.+++|.+. |.+-|.-+|
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~------------------------------------L~lLy~~~g--- 387 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKDFSG------------------------------------LLLLYSSTG--- 387 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHH------------------------------------HHHHHHHCT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCccc------------------------------------cHHHHHHhC---
Confidence 99999999999999999999999999887322 222233233
Q ss_pred hHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1199 DIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1199 ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
|...+..+++.+.+.|++..|...+=-.++..+-..+|+.-|+++.|.=.||.
T Consensus 388 ---------~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~t 440 (443)
T PF04053_consen 388 ---------DREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFART 440 (443)
T ss_dssp ----------HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHh
Confidence 33446778888999999999999999999999999999999999999988875
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.32 E-value=0.0082 Score=70.33 Aligned_cols=183 Identities=15% Similarity=0.061 Sum_probs=106.2
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH---HHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS---ELIY 1189 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~---~lv~ 1189 (1520)
.+..|+.+|..+...|+.++|+..|.++ +++..|...-..+...|++++-+..+..+-+. +|.-.. .++.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~ 140 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGI 140 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4667999999999999999999999988 44455556666777778888877777755432 333222 3566
Q ss_pred HHHhhCChhhHHHHhc-----CcCcchHHHHHhhhhccccHHHHHHHHHh-h-----cCHHHHHHHHHHhcCHHHH--HH
Q 000428 1190 AYAKIDRLGDIEEFIL-----MPNVANLQNVGDRLYDDTLYEAAKIIYAF-I-----SNWAKLAVTLVKLKQFQGA--VD 1256 (1520)
Q Consensus 1190 ~yAk~~~l~ele~fl~-----~~N~a~v~~vgd~~~eeg~YeaAk~~y~~-~-----~N~~kLA~~lv~L~~y~~A--ve 1256 (1520)
++...|++.+..+.+. .++.+....+...+...++++.|...|.. + +.|. .+.++..+|++..+ .+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~ 219 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLME 219 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHH
Confidence 6666677666633321 13332212233334445566666666632 1 1222 34455555555332 22
Q ss_pred HHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1257 AARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1257 ~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
.+.++-+.. .+++.. +++-.--+...|+..|++++|+.+|++++.++
T Consensus 220 ~~~~~~~~~--------------~~l~~~-------~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 220 RLKAGATDN--------------TELAER-------LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHhcCCCc--------------HHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222211000 000000 01112356788999999999999999998665
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.11 Score=63.90 Aligned_cols=156 Identities=22% Similarity=0.271 Sum_probs=106.1
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHh
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAK 1193 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk 1193 (1520)
..+|+|||.=|+...-.+++++|+.=|-|| -||++-- .|.+ +.++.-|
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~----------------~~iQ--------------l~~a~Yr 440 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY----------------AYIQ--------------LCCALYR 440 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH----------------HHHH--------------HHHHHHH
Confidence 459999999999888888999999999997 5555533 2222 1222223
Q ss_pred hCChhhHHHHhcC-----cCcchHHH-HHhhhhccccHHHHHHHHHhhc-----------CHHHH---HHHHHH-hcCHH
Q 000428 1194 IDRLGDIEEFILM-----PNVANLQN-VGDRLYDDTLYEAAKIIYAFIS-----------NWAKL---AVTLVK-LKQFQ 1252 (1520)
Q Consensus 1194 ~~~l~ele~fl~~-----~N~a~v~~-vgd~~~eeg~YeaAk~~y~~~~-----------N~~kL---A~~lv~-L~~y~ 1252 (1520)
++++++.+.+-.. |+.+.+.+ .|+.+.+.++|+.|.+-|+..- |-.-| |....+ -+++.
T Consensus 441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~ 520 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH
Confidence 3444444333221 77787855 8999999999999999888654 22212 333333 58888
Q ss_pred HHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1253 GAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1253 ~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
+|+.+.+||-..+.- -+.|. +.|...=.++|+.+|||.|||++..+-|-
T Consensus 521 ~a~~Ll~KA~e~Dpk------------ce~A~-------------~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 521 QAENLLRKAIELDPK------------CEQAY-------------ETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHccCch------------HHHHH-------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 898888887755443 23332 35666677899999999999998655554
No 63
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.0055 Score=71.31 Aligned_cols=208 Identities=17% Similarity=0.161 Sum_probs=113.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCc
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDA 1148 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~ 1148 (1520)
.|+.....+.|++|...|.| |.....+.. +...|...-+. -..+|.+. .......-++.|++.|.+.|++
T Consensus 41 Aa~~fk~~~~~~~A~~ay~k------Aa~~~~~~~-~~~~Aa~~~~~--Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEK------AADCYEKLG-DKFEAAKAYEE--AANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHH------HHHHHHHTT--HHHHHHHHHH--HHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHhccchhHHHHHH------HHHHHHHcC-CHHHHHHHHHH--HHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 45666678888888888877 555444422 21111111111 01111111 1111222355577777777776
Q ss_pred chHH----HHHHHHHhc-CChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccc
Q 000428 1149 TQFL----DVIRAAEDA-DVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDT 1223 (1520)
Q Consensus 1149 s~~~----evi~~a~~a-~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg 1223 (1520)
+.-. ++-..++.. ++++.-+++++.|-.. |...|+....-.+ ...+|+.+...|
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~-------------y~~e~~~~~a~~~--------~~~~A~l~~~l~ 169 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL-------------YEQEGSPHSAAEC--------LLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH-------------HHHTT-HHHHHHH--------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------HHHCCChhhHHHH--------HHHHHHHHHHhC
Confidence 6544 344445555 6777777777754332 3322222222222 356788888888
Q ss_pred cHHHHHHHHHhhc---------------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhcc
Q 000428 1224 LYEAAKIIYAFIS---------------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGL 1288 (1520)
Q Consensus 1224 ~YeaAk~~y~~~~---------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl 1288 (1520)
+|+.|..+|+.+- -|.+...|+...|++-.|-++..+..+. .-....+.|.++
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~------~~~F~~s~E~~~------ 237 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ------DPSFASSREYKF------ 237 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT------STTSTTSHHHHH------
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCCCcHHHHH------
Confidence 8888888887543 1345577788889988887777763322 223345666676
Q ss_pred ccccccccHHHHHHHHHhcC--CHHHHHHHHHhhcCccccc
Q 000428 1289 NIIVQVDDLEEVSEYYQNRG--YFNELISLMESGLGLERAH 1327 (1520)
Q Consensus 1289 ~li~~~d~l~elv~~Ye~~G--~f~eLI~Lle~gl~lerAh 1327 (1520)
+++|++.|++.. .|++++.-|.+...|+.=+
T Consensus 238 --------~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 238 --------LEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp --------HHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred --------HHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 789999998654 8999999998887766553
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0053 Score=75.78 Aligned_cols=192 Identities=20% Similarity=0.197 Sum_probs=143.0
Q ss_pred HHHHHHHHHH-hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH-----HHHHHHHhcCChhHHHHHHHHHhh-
Q 000428 1106 IERAVEFAFR-VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL-----DVIRAAEDADVYHDLVRYLLMVRQ- 1176 (1520)
Q Consensus 1106 ~~~A~e~Aek-~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~-----evi~~a~~a~~~e~Li~yL~m~r~- 1176 (1520)
+--+...+.. -+.+--|+-+|--|+-.|+..+|-.+|-|| -||+.=. .-.++.+ .++...+--|-.-+|.
T Consensus 298 f~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 298 FLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLM 376 (611)
T ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhc
Confidence 4456666665 456678999999999999999999999999 4544322 2223332 3444445555554443
Q ss_pred -hcCCcchhHHHHHHHHhhCChhhHHHHhcC-----cCcchH-HHHHhhhhccccHHHHHHHHHhhc-------------
Q 000428 1177 -KVKEPKVDSELIYAYAKIDRLGDIEEFILM-----PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS------------- 1236 (1520)
Q Consensus 1177 -~~~ep~id~~lv~~yAk~~~l~ele~fl~~-----~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~------------- 1236 (1520)
..-.|.+ =++..|-+++.+...+.|... ||.+=| .++|=..|.-+.|.+|...|...-
T Consensus 377 ~G~hlP~L--Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 377 PGCHLPSL--YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred cCCcchHH--HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 2444444 267788999999999999654 777766 779999999999999999998765
Q ss_pred --CHHHHHHHHHHhcCHHHHHHHHHHhC--ChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHH
Q 000428 1237 --NWAKLAVTLVKLKQFQGAVDAARKAN--SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNE 1312 (1520)
Q Consensus 1237 --N~~kLA~~lv~L~~y~~Ave~AkKa~--~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~e 1312 (1520)
.+..|+.+|+|+++|.+|++.++||- +|+-| +..-.+.-.|--.|+++.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~---------------------------~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA---------------------------STHASIGYIYHLLGNLDK 507 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch---------------------------hHHHHHHHHHHHhcChHH
Confidence 47789999999999999999999965 44444 112355567788999999
Q ss_pred HHHHHHhhcCccccc
Q 000428 1313 LISLMESGLGLERAH 1327 (1520)
Q Consensus 1313 LI~Lle~gl~lerAh 1327 (1520)
||..|.+++.+.+-.
T Consensus 508 Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 508 AIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHhcCCcc
Confidence 999999999888773
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.013 Score=73.78 Aligned_cols=206 Identities=15% Similarity=0.180 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHH--hhccHHHHHHHHHhcCCcchHH-------HHHHHHHhcCChhHHHHHHHHHhhh----cCCcchhH
Q 000428 1119 DAVWSQVAKAQL--REGLVSDAIESFIRADDATQFL-------DVIRAAEDADVYHDLVRYLLMVRQK----VKEPKVDS 1185 (1520)
Q Consensus 1119 ~eVw~~lgka~l--~~~~v~eAI~~Yika~d~s~~~-------evi~~a~~a~~~e~Li~yL~m~r~~----~~ep~id~ 1185 (1520)
.++..-+|+.+. ..-+.++||..|.| .|++.- .+-.++++..+|+.-.+++..+|++ +++-.|=+
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k--lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEK--LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 444455555552 23457778888877 454432 6778888888888888888888874 55555555
Q ss_pred HHHHHHHhhCChhhH-HHHhcC-cCcchH-HHHHhhhhccccHHHHHHHHHhhc----CHH----HHHHHHHHhcCHHHH
Q 000428 1186 ELIYAYAKIDRLGDI-EEFILM-PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS----NWA----KLAVTLVKLKQFQGA 1254 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~el-e~fl~~-~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~----N~~----kLA~~lv~L~~y~~A 1254 (1520)
.++..+-+.=.|.-| ++.|+. ++.+.- =++|+++.=+++++.|.++|...- +|+ =++.=++-..+|+.|
T Consensus 395 T~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhH
Confidence 666666665555555 556654 555544 778888888888888888888665 221 123333457788888
Q ss_pred HHHHHHhC--Chh---hHHHHHHHHhcchhhhHHHhhccc-ccccccc---HHHHHHHHHhcCCHHHHHHHHHhhcCccc
Q 000428 1255 VDAARKAN--SAK---TWKEVCFACVDAEEFRLAQICGLN-IIVQVDD---LEEVSEYYQNRGYFNELISLMESGLGLER 1325 (1520)
Q Consensus 1255 ve~AkKa~--~~k---~wk~v~~acv~~~e~rLA~~~gl~-li~~~d~---l~elv~~Ye~~G~f~eLI~Lle~gl~ler 1325 (1520)
..++|+|- +++ .|.-..-.-...+.++.|...--. +-+.|.. +--+...|++.|+.|+++.+|++|.-++.
T Consensus 475 ~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 475 MKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 88888875 332 454443333434444444422111 2233322 23344556666666666666666655554
Q ss_pred c
Q 000428 1326 A 1326 (1520)
Q Consensus 1326 A 1326 (1520)
.
T Consensus 555 k 555 (638)
T KOG1126|consen 555 K 555 (638)
T ss_pred C
Confidence 4
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.26 E-value=0.034 Score=68.02 Aligned_cols=226 Identities=16% Similarity=0.138 Sum_probs=131.5
Q ss_pred HHHHHHcCCHHHHHHHHHhc----CCcHHH-----HHHHHHhhhhHHHHHHHHHH-----hCChhHHHHHHHHHHhhccH
Q 000428 1070 GEVAVEAQLYEEAFAIFKKF----NLNVQA-----VNVLLDNIRSIERAVEFAFR-----VEEDAVWSQVAKAQLREGLV 1135 (1520)
Q Consensus 1070 A~ia~e~~L~EEA~~LYkK~----~~~~~A-----i~vLi~~~~~~~~A~e~Aek-----~~~~eVw~~lgka~l~~~~v 1135 (1520)
|+++.+.|.++.|...|++. ....-+ ..+.++. +.++.|.+.+++ -+++.++..+|.+++..|+.
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 55555666666666666652 222111 1222222 345555555553 55888999999999999999
Q ss_pred HHHHHHH---Hhc--CCcchHHHHHHHH--------HhcCChhHHHHHHHHH-hhhcCCcchhHHHHHHHHhhCChhhHH
Q 000428 1136 SDAIESF---IRA--DDATQFLDVIRAA--------EDADVYHDLVRYLLMV-RQKVKEPKVDSELIYAYAKIDRLGDIE 1201 (1520)
Q Consensus 1136 ~eAI~~Y---ika--~d~s~~~evi~~a--------~~a~~~e~Li~yL~m~-r~~~~ep~id~~lv~~yAk~~~l~ele 1201 (1520)
++|+..+ .|. .++..+...-..+ ......+.|.++...- ++..++|.+...++..+.+.|+.+...
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 9777764 443 3555553222111 2222233444444421 011247788788888888889988776
Q ss_pred HHhcC-----cCcc-----hHHHHHhhhhccccHHHHHHHHHhh----cCHH------HHHHHHHHhcCHHHHHHHHHHh
Q 000428 1202 EFILM-----PNVA-----NLQNVGDRLYDDTLYEAAKIIYAFI----SNWA------KLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1202 ~fl~~-----~N~a-----~v~~vgd~~~eeg~YeaAk~~y~~~----~N~~------kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
+.+.. ++.. .+..++. .+.++.+++...++.. ++.. .+|.++.+.|+|++|.+..+++
T Consensus 284 ~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 65442 4444 2333333 2346666776666432 2333 5688898999999999888852
Q ss_pred CChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 000428 1262 NSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLG 1322 (1520)
Q Consensus 1262 ~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~ 1322 (1520)
..-+. --+++....+...+++.|..+++.+++++|++
T Consensus 362 ~a~~~------------------------~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 362 AACKE------------------------QLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhhc------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21100 00111123566888999999999999998853
No 67
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.25 E-value=0.018 Score=76.15 Aligned_cols=365 Identities=13% Similarity=0.165 Sum_probs=218.4
Q ss_pred CCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHH
Q 000428 1063 NFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESF 1142 (1520)
Q Consensus 1063 nyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Y 1142 (1520)
||++... +-|+.-..+|+..+++++|+.++-++ ....-+....||-+|..++..++..++..-
T Consensus 25 ~~~p~n~-------~a~~~Li~~~~~~~~~deai~i~~~~---------l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv- 87 (906)
T PRK14720 25 NYSLSKF-------KELDDLIDAYKSENLTDEAKDICEEH---------LKEHKKSISALYISGILSLSRRPLNDSNLL- 87 (906)
T ss_pred cCCcchH-------HHHHHHHHHHHhcCCHHHHHHHHHHH---------HHhCCcceehHHHHHHHHHhhcchhhhhhh-
Confidence 6665543 22345566787778888888877654 233445778888888877777665555443
Q ss_pred HhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchh---HHHHHHHHhhCChhhH----HHHhc-CcCcchH-H
Q 000428 1143 IRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVD---SELIYAYAKIDRLGDI----EEFIL-MPNVANL-Q 1213 (1520)
Q Consensus 1143 ika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id---~~lv~~yAk~~~l~el----e~fl~-~~N~a~v-~ 1213 (1520)
+ ++.......++ .++.|+.. .....+.-. -.|+.||.|+|+..+. +.+|. .++++.+ +
T Consensus 88 -~---------~l~~~~~~~~~-~~ve~~~~--~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 88 -N---------LIDSFSQNLKW-AIVEHICD--KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred -h---------hhhhcccccch-hHHHHHHH--HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH
Confidence 2 22222222333 44444442 111111111 2377888888887666 33333 2444444 6
Q ss_pred HHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhh------hHHHhhc
Q 000428 1214 NVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEF------RLAQICG 1287 (1520)
Q Consensus 1214 ~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~------rLA~~~g 1287 (1520)
.+|..+.++ +.+.|+.+|.. ....|...++|.++. ..|..+|+--.+..++ ++...-|
T Consensus 155 n~AY~~ae~-dL~KA~~m~~K------AV~~~i~~kq~~~~~---------e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKK------AIYRFIKKKQYVGIE---------EIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHH------HHHHHHhhhcchHHH---------HHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 677777777 77777776653 344455556665553 4588888877777777 4443322
Q ss_pred cccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHH
Q 000428 1288 LNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACD 1367 (1520)
Q Consensus 1288 l~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce 1367 (1520)
-.. -.+.+..|..+|-..+.|++.|.+|+..+..+......+-||+-+|.+.- ..+-++...++...
T Consensus 219 ~~~--~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY-----------~~~~~~ee~l~~s~ 285 (906)
T PRK14720 219 FTR--LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKY-----------KDHSLLEDYLKMSD 285 (906)
T ss_pred cch--hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHc-----------cCcchHHHHHHHhc
Confidence 111 12557889999999999999999999999999876666777777665332 22223333333344
Q ss_pred hhcchHHHHHHHHhhccHHHHH-----HHHHhcCchhhcchhhHH-----HHHhhhhhHHHHHHHHHHHhhCcchHHHHH
Q 000428 1368 EQQHWKELTYLYIQYDEFDNAA-----TTIMNHSPEAWDHMQFKD-----VAVKVANVELYYKAVHFYLQEHPDLINDLL 1437 (1520)
Q Consensus 1368 ~~~lW~E~vfLy~~~~e~d~A~-----~~mi~h~~~a~~h~~fk~-----ii~kvan~elyYkai~FyL~~~P~~l~dlL 1437 (1520)
=...|+.....+.. |+.=+ +-++++ .|--+.-++ ++.......-.--++.|++..=-.+-.|++
T Consensus 286 l~~~~~~~~~~i~~---fek~i~f~~G~yv~H~---~WGvG~I~~v~~~~i~IdF~~k~gh~ms~~~A~~sL~pL~~dHi 359 (906)
T PRK14720 286 IGNNRKPVKDCIAD---FEKNIVFDTGNFVYHR---TWGVGKITSISDNGIFVDFVSKRGHKLSIQMAITALKPLKRDHI 359 (906)
T ss_pred cccCCccHHHHHHH---HHHHeeecCCCEEEEc---CCCCceeeEEcCCceEEEeccCCCCcCCHHHHHHhcCcCChhhe
Confidence 44556655444433 22210 001111 232222111 111111111112455666655445667788
Q ss_pred HHHhhcCCHHHHHHHHHhcCCccchHHHHHHHhh-cChHHHHHHHHHHhhhhhhhHH
Q 000428 1438 NVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQS-NNVSAVNEALNEIYVEEEDYER 1493 (1520)
Q Consensus 1438 ~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~-~n~~~Vneal~~l~ieeed~~~ 1493 (1520)
.++.-..|++.+..++++ +...+++--|++..+ .+.+.+=+.|-...|-+++|..
T Consensus 360 ~v~k~~~~~~~l~~~~~~-dp~~~ik~~lks~~~~~t~~~ik~eL~~~vi~~~~W~k 415 (906)
T PRK14720 360 WVLKAVEPKEELVDKFKK-DIPWALKTIIKSYDNRMDLKDIKSELVPSLLTQSEWSK 415 (906)
T ss_pred ehhHhhCCHHHHHHHHHh-CHHHHHHHHHHhcCCccCHHHHHHHHHHhhCCHHHHHH
Confidence 887777899999888875 456789999999988 7888999999999999999854
No 68
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.19 E-value=0.024 Score=74.96 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=132.7
Q ss_pred hhHHHHHH-HhhCchHHHHHHHHHhCCCh---HHHHHHHHHcCCHH-HHHHHHHhc-CCcH--HHHHHHHHhhhhHHHHH
Q 000428 1039 QNLLILTA-IKADPSRVMDYVNRLDNFDG---PAVGEVAVEAQLYE-EAFAIFKKF-NLNV--QAVNVLLDNIRSIERAV 1110 (1520)
Q Consensus 1039 qnLlIlta-~k~d~~kl~~yI~~ldnyd~---~~IA~ia~e~~L~E-EA~~LYkK~-~~~~--~Ai~vLi~~~~~~~~A~ 1110 (1520)
.+|-|+|+ .|.+|..+.+.+.+...-+. ..-|.-|.+|-+|= .+-.||+.. |-|| -|.-|.....++=++.+
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyL 871 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYL 871 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccChHHHH
Confidence 34666653 67888899998888776663 44566676665554 444555542 3332 33444444444445566
Q ss_pred HHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHH
Q 000428 1111 EFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYA 1190 (1520)
Q Consensus 1111 e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~ 1190 (1520)
.|..+.+.-+.-++==+.--..++.++|+.+.-+++. +.+++..+|.+ +.+-.+..|.+
T Consensus 872 P~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~--------------~~~~e~~n~I~------kh~Ly~~aL~l- 930 (1265)
T KOG1920|consen 872 PFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGE--------------TYFPECKNYIK------KHGLYDEALAL- 930 (1265)
T ss_pred HHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCc--------------cccHHHHHHHH------hcccchhhhhe-
Confidence 6666555444433311112224567777777766662 35555566655 12222222222
Q ss_pred HHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhh--H-
Q 000428 1191 YAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKT--W- 1267 (1520)
Q Consensus 1191 yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~--w- 1267 (1520)
|+ +..|.+- .-++++|+.|.++++|+.|-..|....|--+.-.+|...|+|++|...|++.+.++. -
T Consensus 931 y~-----~~~e~~k-----~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~ 1000 (1265)
T KOG1920|consen 931 YK-----PDSEKQK-----VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVI 1000 (1265)
T ss_pred ec-----cCHHHHH-----HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHH
Confidence 11 2233331 113779999999999999999999999999999999999999999999997665542 2
Q ss_pred --HHHHHHHhcchhhhHHH
Q 000428 1268 --KEVCFACVDAEEFRLAQ 1284 (1520)
Q Consensus 1268 --k~v~~acv~~~e~rLA~ 1284 (1520)
.+.+..|++.+..-.|.
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHHHHHHHHHcccchhHH
Confidence 24567777777666554
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.17 E-value=0.054 Score=66.19 Aligned_cols=254 Identities=16% Similarity=0.150 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHh----CChhHHHHHHHHH-HhhccHHHHHHHHHhc--CCcchHHHH----HHHHHhcCChhHHHHHHH
Q 000428 1104 RSIERAVEFAFRV----EEDAVWSQVAKAQ-LREGLVSDAIESFIRA--DDATQFLDV----IRAAEDADVYHDLVRYLL 1172 (1520)
Q Consensus 1104 ~~~~~A~e~Aek~----~~~eVw~~lgka~-l~~~~v~eAI~~Yika--~d~s~~~ev----i~~a~~a~~~e~Li~yL~ 1172 (1520)
++|+.|...+.+. +.|.+++.++... ...|+.+.|..+|.++ .+|++...+ .+.+...|+++.-..+++
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5788777776653 3467877775544 6777888888888776 344443222 345555666666666666
Q ss_pred HHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchH-HHHHhhhhccccHHHHHHHHHhhcCHH-----HHH----
Q 000428 1173 MVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANL-QNVGDRLYDDTLYEAAKIIYAFISNWA-----KLA---- 1242 (1520)
Q Consensus 1173 m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~N~~-----kLA---- 1242 (1520)
..+.. .|++..+ ...++.+...|++++|..++....... .+.
T Consensus 178 ~~~~~----------------------------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 178 KLLEV----------------------------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred HHHhc----------------------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 43322 1333333 335555555566666665555444211 111
Q ss_pred HHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 000428 1243 VTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLG 1322 (1520)
Q Consensus 1243 ~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~ 1322 (1520)
.+|+.+ ...+........-.+.|+.+-..-- -+|+-.-.+...+...|..+++...+++++.
T Consensus 230 ~a~~~l--~~~~~~~~~~~~l~~~w~~lp~~~~----------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 230 QAWIGL--MDQAMADQGSEGLKRWWKNQSRKTR----------------HQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHH--HHHHHHhcCHHHHHHHHHhCCHHHh----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111110 1111110000001123322211110 1223345778899999999999999999987
Q ss_pred ccccccchhHHHHHHHhcc---ChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHH---HHHhcC
Q 000428 1323 LERAHMGIFTELGVLYARY---RYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAAT---TIMNHS 1396 (1520)
Q Consensus 1323 lerAh~~~fTeLailyAky---~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~---~mi~h~ 1396 (1520)
.+. | .+++.+|+.- ++++.+.+++.+-++- +++..+..-+--++...++|++|.. ..++..
T Consensus 292 ~~~-~----~~l~~l~~~l~~~~~~~al~~~e~~lk~~--------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 292 RQY-D----ERLVLLIPRLKTNNPEQLEKVLRQQIKQH--------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred cCC-C----HHHHHHHhhccCCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 333 3 3578888876 4555666666644333 3334445555667777788887763 333334
Q ss_pred chhhcchhhHHHHHhhhhhH
Q 000428 1397 PEAWDHMQFKDVAVKVANVE 1416 (1520)
Q Consensus 1397 ~~a~~h~~fk~ii~kvan~e 1416 (1520)
|+.-++-.+-.+..+.++.+
T Consensus 359 P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHH
Confidence 55555556667777775555
No 70
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.16 E-value=0.098 Score=69.51 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=110.9
Q ss_pred HHHHHHHh--hCchHHHHHHHHHh-------CCChHHHHHHHHHcCCHHHHHHHHHhcC--CcHHHHHHHHHhhhhHHHH
Q 000428 1041 LLILTAIK--ADPSRVMDYVNRLD-------NFDGPAVGEVAVEAQLYEEAFAIFKKFN--LNVQAVNVLLDNIRSIERA 1109 (1520)
Q Consensus 1041 LlIlta~k--~d~~kl~~yI~~ld-------nyd~~~IA~ia~e~~L~EEA~~LYkK~~--~~~~Ai~vLi~~~~~~~~A 1109 (1520)
|..+.|.| .||..---|+++|. +|...+. .+.|+.|..=..+.| .|++.++...+|. .+++|
T Consensus 855 Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~------L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~-Ly~~a 927 (1265)
T KOG1920|consen 855 LALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDY------LKRYEDALSHLSECGETYFPECKNYIKKHG-LYDEA 927 (1265)
T ss_pred HHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHH------HHHHHHHHHHHHHcCccccHHHHHHHHhcc-cchhh
Confidence 44444444 37777666776665 3333332 333333333333333 2333333333331 33333
Q ss_pred HHHHH--HhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHH
Q 000428 1110 VEFAF--RVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSEL 1187 (1520)
Q Consensus 1110 ~e~Ae--k~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~l 1187 (1520)
..+-. ......+|--+|.+..+..+.++|--.|.++++.+ +.+.++..++.|.+....... ..++ -|--+
T Consensus 928 L~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle---kAl~a~~~~~dWr~~l~~a~q----l~~~-~de~~ 999 (1265)
T KOG1920|consen 928 LALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLE---KALKAYKECGDWREALSLAAQ----LSEG-KDELV 999 (1265)
T ss_pred hheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHH---HHHHHHHHhccHHHHHHHHHh----hcCC-HHHHH
Confidence 33222 11233444445555555556666666666665533 345555556666666555542 1111 11111
Q ss_pred HHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1188 IYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1188 v~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
.. | .+-++..-.....+|||+++-...+|.-+...+||+-.+|..|.-.|.+++.++..
T Consensus 1000 ~~--a-------------------~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1000 IL--A-------------------EELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDII 1058 (1265)
T ss_pred HH--H-------------------HHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHH
Confidence 10 0 11234444557789999999999999999999999999999999999999988888
Q ss_pred HHHHHHHh
Q 000428 1268 KEVCFACV 1275 (1520)
Q Consensus 1268 k~v~~acv 1275 (1520)
+++....+
T Consensus 1059 ee~l~~al 1066 (1265)
T KOG1920|consen 1059 EEVLKPAL 1066 (1265)
T ss_pred HHHHhHHH
Confidence 77644333
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.16 E-value=1.5 Score=58.83 Aligned_cols=431 Identities=12% Similarity=0.094 Sum_probs=207.0
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCcccc-chhhhHHHHHHHhhCchHHHHHHHHHh---CCChHHH---HHHH
Q 000428 1001 QVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGN-FNLQNLLILTAIKADPSRVMDYVNRLD---NFDGPAV---GEVA 1073 (1520)
Q Consensus 1001 ~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N-~~LqnLlIlta~k~d~~kl~~yI~~ld---nyd~~~I---A~ia 1073 (1520)
.-..+|-.|...+.. .-++.|++.+... .+| +.+.+|+.+....-+.+....|.+++- |.....+ |.+.
T Consensus 37 ~y~~aii~~r~Gd~~-~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 37 QYDSLIIRARAGDTA-PVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 345677777777665 6688888876322 122 234467666656667777788877774 2222222 4455
Q ss_pred HHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchH
Q 000428 1074 VEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQF 1151 (1520)
Q Consensus 1074 ~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~ 1151 (1520)
...|.|+.|+.+|++ ++ ...-+++++++-++..+.+.++.++|++.+.++ .+|+..
T Consensus 113 ~~~gdyd~Aiely~k--------------------aL--~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 113 RNEKRWDQALALWQS--------------------SL--KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred HHcCCHHHHHHHHHH--------------------HH--hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 566777777777766 21 223446777777778888888888888887776 555544
Q ss_pred HH--HHHHHHhcCCh-hHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcC-cCcc------------hHHHH
Q 000428 1152 LD--VIRAAEDADVY-HDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILM-PNVA------------NLQNV 1215 (1520)
Q Consensus 1152 ~e--vi~~a~~a~~~-e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~-~N~a------------~v~~v 1215 (1520)
.. .++.....+++ +.+-.|=++.+..-.++.+=.+++.+.++.|-.+...+-+.. +... ..+.|
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 43 22222222444 444444443333333333334566666666655444444332 1100 00111
Q ss_pred Hhh----hhccccHHHHHHHHHhhcCHHHH------------------HHHHHHhcCHHHHHHHHHHhCChhhHHHHHHH
Q 000428 1216 GDR----LYDDTLYEAAKIIYAFISNWAKL------------------AVTLVKLKQFQGAVDAARKANSAKTWKEVCFA 1273 (1520)
Q Consensus 1216 gd~----~~eeg~YeaAk~~y~~~~N~~kL------------------A~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~a 1273 (1520)
..- --+.+.|..|...+..+.+..+. -..|...|++.++++.+.....+.
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~-------- 322 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG-------- 322 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC--------
Confidence 000 01223344444333333322211 223444555555555544422110
Q ss_pred HhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc--cccc--chhHHHHHHHhccChhhhHHH
Q 000428 1274 CVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE--RAHM--GIFTELGVLYARYRYEKLMEH 1349 (1520)
Q Consensus 1274 cv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le--rAh~--~~fTeLailyAky~pekLmeh 1349 (1520)
--+++--.+-+.+.|-..+..++|..+|+..+.-+ ..+. .+....+..||--.-|+.-++
T Consensus 323 ----------------~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 323 ----------------YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred ----------------CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 01112223577788888888888888888764221 1000 111112344444444443222
Q ss_pred HHHHHHhh--chH-HHHHH----HHhhcchHHHHHH----HHhhccHHHHHHHHHhcCchhhcchhhHHHHHhh-hhhHH
Q 000428 1350 IKLFSTRL--NIP-KLIRA----CDEQQHWKELTYL----YIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKV-ANVEL 1417 (1520)
Q Consensus 1350 lk~y~~~i--Ni~-K~i~~----ce~~~lW~E~vfL----y~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kv-an~el 1417 (1520)
... -.++ +.| ++-.. -.-+.-|.+.-.| ++-.|+.+.|...+-+- +..- +|.++
T Consensus 387 ~~~-l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l-------------~~~aP~n~~l 452 (822)
T PRK14574 387 YQF-AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL-------------SSTAPANQNL 452 (822)
T ss_pred HHH-HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------HHhCCCCHHH
Confidence 222 2111 111 00000 0012334444222 22234444443332222 2222 44444
Q ss_pred HHHHHHHHH-hhCcchHHHHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHHHhhcChHHHHHHHHHHhhhhhhhHHHHH
Q 000428 1418 YYKAVHFYL-QEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRE 1496 (1520)
Q Consensus 1418 yYkai~FyL-~~~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal~~l~ieeed~~~Lr~ 1496 (1520)
.-...+-+. ..+|......+ ..+..+||.-.--. +..+..+|..-.|+....+.+.+.+.+=|....+.|.+
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~-k~a~~l~P~~~~~~------~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQEL-KAVESLAPRSLILE------RAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhhhCCccHHHH------HHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 333333333 33444444444 22222343321111 33455666666677888889999999999998888877
Q ss_pred hHHhhh
Q 000428 1497 SIDMHD 1502 (1520)
Q Consensus 1497 sId~y~ 1502 (1520)
.-+.++
T Consensus 526 ~~~~h~ 531 (822)
T PRK14574 526 QRKVHN 531 (822)
T ss_pred HHHHhh
Confidence 444333
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=97.15 E-value=0.016 Score=73.71 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 000428 1239 AKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1239 ~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
..+|.+|..+|++++|.+.+++
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3356666666666666666555
No 73
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.025 Score=74.32 Aligned_cols=300 Identities=18% Similarity=0.248 Sum_probs=200.1
Q ss_pred chhHHHHHHHHhhCChhhHHHHhcCcC-cchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHH--------
Q 000428 1182 KVDSELIYAYAKIDRLGDIEEFILMPN-VANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQ-------- 1252 (1520)
Q Consensus 1182 ~id~~lv~~yAk~~~l~ele~fl~~~N-~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~-------- 1252 (1520)
-|||.|..+|..++. +..-+++...| ...++.+...+.+.++|.+..++|..-+++.+.--+++.+.+..
T Consensus 464 ~IDttLlk~Yl~~n~-~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~ 542 (877)
T KOG2063|consen 464 LIDTTLLKCYLETNP-GLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL 542 (877)
T ss_pred HHHHHHHHHHHhcCc-hhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchh
Confidence 489999999999873 34456666554 89999999999999999999999999999998888888877733
Q ss_pred ----HHHHHHHHhCCh--h-hHHH---HHHHHhcchhhhHHHhhccccccccc-----cH--HHHHHHHHhcCCHHHHHH
Q 000428 1253 ----GAVDAARKANSA--K-TWKE---VCFACVDAEEFRLAQICGLNIIVQVD-----DL--EEVSEYYQNRGYFNELIS 1315 (1520)
Q Consensus 1253 ----~Ave~AkKa~~~--k-~wk~---v~~acv~~~e~rLA~~~gl~li~~~d-----~l--~elv~~Ye~~G~f~eLI~ 1315 (1520)
.=+++-++-.++ . .|+= |+..|- ..|+.|...-| .+ +.++.| ......+=+|.
T Consensus 543 ~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p---------~~gi~Ift~~~~~~~~sis~~~Vl~~-l~~~~~~l~I~ 612 (877)
T KOG2063|consen 543 DGLEKIIEYLKKLGAENLDLILEYADWVLNKNP---------EAGIQIFTSEDKQEAESISRDDVLNY-LKSKEPKLLIP 612 (877)
T ss_pred hhHHHHHHHHHHhcccchhHHHHHhhhhhccCc---------hhheeeeeccChhhhccCCHHHHHHH-hhhhCcchhHH
Confidence 445555555544 1 2210 111111 23444444411 11 344444 55667778888
Q ss_pred HHHhhcCcc-ccccchhHHHHHHHhccC------------------hhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHH
Q 000428 1316 LMESGLGLE-RAHMGIFTELGVLYARYR------------------YEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELT 1376 (1520)
Q Consensus 1316 Lle~gl~le-rAh~~~fTeLailyAky~------------------pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~v 1376 (1520)
|+|..+--. ....-.+|.|+.+|++-- ++|+..++.. ++.+...-++..-....+|.|..
T Consensus 613 YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~-s~~Y~p~~~L~~~~~~~l~ee~a 691 (877)
T KOG2063|consen 613 YLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLES-SDLYDPQLLLERLNGDELYEERA 691 (877)
T ss_pred HHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhh-hcccCcchhhhhccchhHHHHHH
Confidence 888875332 223445577777776431 4455555554 55555555665555699999999
Q ss_pred HHHHhhccHHHHHHHHHhc-----CchhhcchhhHHHHHhhhhhHHHHHHHHHHHhh------CcchHHHHHHHHhhcCC
Q 000428 1377 YLYIQYDEFDNAATTIMNH-----SPEAWDHMQFKDVAVKVANVELYYKAVHFYLQE------HPDLINDLLNVLALRVD 1445 (1520)
Q Consensus 1377 fLy~~~~e~d~A~~~mi~h-----~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~------~P~~l~dlL~~l~~rlD 1445 (1520)
-++.+.|++++|+.+...- .+.+.=+.++. ..-.|-++|+.++.-|+.. .|..+.++|..-+.|+|
T Consensus 692 ill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~---~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d 768 (877)
T KOG2063|consen 692 ILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYE---SDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLD 768 (877)
T ss_pred HHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhcc---CCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcC
Confidence 9999999999999887765 11222222233 2234778888998888844 56777888999999999
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHhhcC-----hHHHHHHHH--HHhhhhhhhHHHHH
Q 000428 1446 HTRVVDIMRKAGHLLLVKPYMVAVQSNN-----VSAVNEALN--EIYVEEEDYERLRE 1496 (1520)
Q Consensus 1446 ~~rvV~~~~k~~~ipLik~yL~~vq~~n-----~~~Vneal~--~l~ieeed~~~Lr~ 1496 (1520)
+..+.+..++.-.++.+.+++..+-..+ ...|-..|- +...-.++-..+|+
T Consensus 769 ~~~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q~E~~~~~~~l~~~~s 826 (877)
T KOG2063|consen 769 LAQVLKLLPDDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQAELLPSTEELNKLRS 826 (877)
T ss_pred HHHHHHhCCccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhcchHHHHHHhhc
Confidence 9999999999999999998887654433 445555554 44444444444443
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.07 E-value=0.15 Score=57.41 Aligned_cols=266 Identities=12% Similarity=0.119 Sum_probs=137.7
Q ss_pred CeEEEEEcCCCCCcccccc--CcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeE
Q 000428 48 NSVVIIDMNQPMQPLRRPI--TADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125 (1520)
Q Consensus 48 ~~v~Ivdl~~~~~~~r~pi--~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l 125 (1520)
+.|.++|+..+..+.+-+. ..-+...+|..+.+.+-+. ....+.+||+.+.+.+........+....|-.+...
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 86 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS----DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKI 86 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC----CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCE
Confidence 3777777765432221111 1224556788776543221 146799999998877666555555666677655544
Q ss_pred EEEe---cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccccc--
Q 000428 126 GVVT---QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQR-- 200 (1520)
Q Consensus 126 ~lVT---~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~-- 200 (1520)
.+|+ +..++.|++.+ ..+...|+- +.++.+-..+++++|++..+-. + ..+-.|..+.+.
T Consensus 87 l~~~~~~~~~l~~~d~~~-~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~-------~---~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIET-RKVLAEIPV-----GVEPEGMAVSPDGKIVVNTSET-------T---NMAHFIDTKTYEIV 150 (300)
T ss_pred EEEEcCCCCeEEEEECCC-CeEEeEeeC-----CCCcceEEECCCCCEEEEEecC-------C---CeEEEEeCCCCeEE
Confidence 4444 36799999864 234433431 1234456778999997765421 1 112223332211
Q ss_pred ccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCC-CCCcceeEEe
Q 000428 201 SQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDF-ADDFPVAMQI 279 (1520)
Q Consensus 201 sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~-~~DFPv~mqv 279 (1520)
.....++......+..+ .+.+.+. ...+ +++.+.++.+..-- +..+...|.-. ..-.|.++.+
T Consensus 151 ~~~~~~~~~~~~~~s~d-----g~~l~~~--~~~~----~~v~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 151 DNVLVDQRPRFAEFTAD-----GKELWVS--SEIG----GTVSVIDVATRKVI-----KKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred EEEEcCCCccEEEECCC-----CCEEEEE--cCCC----CEEEEEEcCcceee-----eeeeecccccccccCCccceEE
Confidence 11111222222222111 2233332 1122 57888887542110 11111111000 1235777888
Q ss_pred ccccceEEEEe-ccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEc-CCCcEEEEEeecCccccc
Q 000428 280 SHKYGLIYVIT-KLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAIN-RRGQVLLATVNEATIVPF 350 (1520)
Q Consensus 280 s~k~g~iyviT-K~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn-~~GqVl~v~i~~~~ivpy 350 (1520)
|+.-..+|+.. ..+-+++||++|+..+-.-. ....++.-+-++++.-+++-+ .+|.|.-+.++..+.+--
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 87777788753 45679999999998763322 233444444333333344334 478888887777665443
No 75
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.00 E-value=2.5 Score=56.09 Aligned_cols=338 Identities=16% Similarity=0.163 Sum_probs=179.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhhc-CCCccccchhhhHHHHHHHhh----CchHHHHHHHHHhCCC------hHHHHHH
Q 000428 1004 AAVKAFMTADLPHELIELLEKIVLQ-NSAFSGNFNLQNLLILTAIKA----DPSRVMDYVNRLDNFD------GPAVGEV 1072 (1520)
Q Consensus 1004 ~~Vkaf~~a~lp~eLi~lLekivl~-~~~fs~N~~LqnLlIlta~k~----d~~kl~~yI~~ldnyd------~~~IA~i 1072 (1520)
.+.++++..|--++-+-..|++... ++.+-. +-=|.-|+|... ..++..+++.+.-.+. ...+|.+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et---m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYET---MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHH---HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5566666555445556677776633 333433 233444555542 3355566666555443 3455777
Q ss_pred HHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHH
Q 000428 1073 AVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFL 1152 (1520)
Q Consensus 1073 a~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~ 1152 (1520)
.+..+.|-. +..|.+ |+..|..+. +.-.||+...+|.-+...|.+++|...|.+|...
T Consensus 424 ~e~~d~~~s-L~~~~~------A~d~L~~~~-----------~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~---- 481 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGN------ALDILESKG-----------KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK---- 481 (1018)
T ss_pred HHhcChHHH-HHHHHH------HHHHHHHcC-----------CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh----
Confidence 766666666 777777 666665543 3457899999999999999999999999997553
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHH
Q 000428 1153 DVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIY 1232 (1520)
Q Consensus 1153 evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y 1232 (1520)
|....++++- +.+.| +--.++|-.+.+.++++.|-..|
T Consensus 482 -----~~~~~n~de~-----------~~~~l--------------------------t~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 482 -----LLEVANKDEG-----------KSTNL--------------------------TLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred -----hhhhcCcccc-----------ccchh--------------------------HHHHHHHHHHHhhhhhhHHHHHH
Confidence 1111111110 01111 11122333333333444444444
Q ss_pred Hhhc----C----HHHHHHHHHHhcCHHHHHHHHHHh-----CChhhHHHHHHHHhcchhhhHHHhhc----cccccccc
Q 000428 1233 AFIS----N----WAKLAVTLVKLKQFQGAVDAARKA-----NSAKTWKEVCFACVDAEEFRLAQICG----LNIIVQVD 1295 (1520)
Q Consensus 1233 ~~~~----N----~~kLA~~lv~L~~y~~Ave~AkKa-----~~~k~wk~v~~acv~~~e~rLA~~~g----l~li~~~d 1295 (1520)
.++- + |.+|+-...--+...+|.+.-+.+ .+|.+|.-+-+--....+++.|+.-. -....++|
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 4332 1 112211111112333344333332 13344433333333333444443200 00111111
Q ss_pred --cHHHHHHHHH------------hcCCHHHHHHHHHhhcCcc----ccccchhHHHHHHHhccChhhhHHHHHHHHHhh
Q 000428 1296 --DLEEVSEYYQ------------NRGYFNELISLMESGLGLE----RAHMGIFTELGVLYARYRYEKLMEHIKLFSTRL 1357 (1520)
Q Consensus 1296 --~l~elv~~Ye------------~~G~f~eLI~Lle~gl~le----rAh~~~fTeLailyAky~pekLmehlk~y~~~i 1357 (1520)
.+-.|.++|. ++++.++|+++|.+++..+ .|-.| +|+..|. ..++-+++-.|++
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANG----IgiVLA~--kg~~~~A~dIFsq-- 671 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANG----IGIVLAE--KGRFSEARDIFSQ-- 671 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccc----hhhhhhh--ccCchHHHHHHHH--
Confidence 1233444333 4678899999999999887 55577 4555443 3344444444432
Q ss_pred chHHHHHHHH-hhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHH
Q 000428 1358 NIPKLIRACD-EQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVH 1423 (1520)
Q Consensus 1358 Ni~K~i~~ce-~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~ 1423 (1520)
|.++.. ....|..+.-.|+..|+|-.|+.+-..-. --|..+.--+|+.-++. .+|++..
T Consensus 672 ----VrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l-kkf~~~~~~~vl~~Lar--a~y~~~~ 731 (1018)
T KOG2002|consen 672 ----VREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL-KKFYKKNRSEVLHYLAR--AWYEAGK 731 (1018)
T ss_pred ----HHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCHHHHHHHHH--HHHHhhh
Confidence 333333 57899999999999999999995543321 11345555677777776 7777776
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.99 E-value=0.088 Score=64.50 Aligned_cols=112 Identities=18% Similarity=0.103 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhh---hHHHHHHHHHhhchHHHHHHHHhh--cc
Q 000428 1297 LEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEK---LMEHIKLFSTRLNIPKLIRACDEQ--QH 1371 (1520)
Q Consensus 1297 l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pek---Lmehlk~y~~~iNi~K~i~~ce~~--~l 1371 (1520)
.-.++..+...|.+++++..+++++.........-..+...+.+.+|++ +.+.++..-+.- +.++ ..
T Consensus 266 ~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--------p~~~~~~l 337 (409)
T TIGR00540 266 KIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--------DDKPKCCI 337 (409)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--------CCChhHHH
Confidence 3466788999999999999999998765543211001344455555444 444444422111 2234 44
Q ss_pred hHHHHHHHHhhccHHHHHHHHHh-----cCchhhcchhhHHHHHhhhhhH
Q 000428 1372 WKELTYLYIQYDEFDNAATTIMN-----HSPEAWDHMQFKDVAVKVANVE 1416 (1520)
Q Consensus 1372 W~E~vfLy~~~~e~d~A~~~mi~-----h~~~a~~h~~fk~ii~kvan~e 1416 (1520)
..-+-.+|.+.|+|++|..-+-. ..|+..++-..-+++.+..+.+
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 55677888999999999875552 1244444444455555554444
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.83 E-value=0.18 Score=59.68 Aligned_cols=199 Identities=19% Similarity=0.186 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhC---ChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCC
Q 000428 1106 IERAVEFAFRVE---EDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKE 1180 (1520)
Q Consensus 1106 ~~~A~e~Aek~~---~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~e 1180 (1520)
++-.++.|+-.. +-+-.+.+|+..+..|++.||+..|=.| +||.+|.++-+-+. -||.|.|-+.--
T Consensus 22 l~~~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT---------~yLAmGksk~al 92 (504)
T KOG0624|consen 22 LELFLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRAT---------VYLAMGKSKAAL 92 (504)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHH---------HHhhhcCCccch
Confidence 344555555433 4566889999999999999999999998 99999998766554 678877654222
Q ss_pred cchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcC-----------HHHH--------
Q 000428 1181 PKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISN-----------WAKL-------- 1241 (1520)
Q Consensus 1181 p~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N-----------~~kL-------- 1241 (1520)
+.++.-|- +...+.+.-.+-|..+...|.+|.|-.=|..+-+ +.+|
T Consensus 93 ~Dl~rVle---------------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 93 QDLSRVLE---------------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred hhHHHHHh---------------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence 22222100 0001111112233333333444433333322211 1111
Q ss_pred ----HHHHHHhcCHHHHHHHHHHhCChhhHHH----HHHHH-hcchhhhHHHhhccc----ccccc-ccHHHHHHHHHhc
Q 000428 1242 ----AVTLVKLKQFQGAVDAARKANSAKTWKE----VCFAC-VDAEEFRLAQICGLN----IIVQV-DDLEEVSEYYQNR 1307 (1520)
Q Consensus 1242 ----A~~lv~L~~y~~Ave~AkKa~~~k~wk~----v~~ac-v~~~e~rLA~~~gl~----li~~~-d~l~elv~~Ye~~ 1307 (1520)
..-+.-.|+++.|++.-.+--...+|.. .-.-| +..++.+.|. +-|. |-.+. |-.-++...+-..
T Consensus 158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI-~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 158 LVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI-HDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH-HHHHHHHhccccchHHHHHHHHHHHhh
Confidence 1122235677777777766666666742 11222 2223333332 1111 22222 2234555566667
Q ss_pred CCHHHHHHHHHhhcCccccccc
Q 000428 1308 GYFNELISLMESGLGLERAHMG 1329 (1520)
Q Consensus 1308 G~f~eLI~Lle~gl~lerAh~~ 1329 (1520)
|.-++.+.-.+--+.++..|..
T Consensus 237 gd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhh
Confidence 7777777777777777777765
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.78 E-value=2.8 Score=53.52 Aligned_cols=370 Identities=19% Similarity=0.269 Sum_probs=194.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHhc----Cc--chHHHHHHHHHHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhh
Q 000428 954 FKLQARYVVERMDADLWEKVLT----PE--NEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVL 1027 (1520)
Q Consensus 954 fk~~a~ylvk~~~~~lw~~vl~----~~--n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl 1027 (1520)
|+-...++.|- |.+|-..|. .. ..-|+. .|.-+ .++|..++..=-.-.++...+.+||+--+-+.++-+
T Consensus 91 ~er~lv~mHkm--pRIwl~Ylq~l~~Q~~iT~tR~t-fdrAL-raLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL- 165 (835)
T KOG2047|consen 91 FERCLVFMHKM--PRIWLDYLQFLIKQGLITRTRRT-FDRAL-RALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL- 165 (835)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHhcchHHHHHHH-HHHHH-HhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-
Confidence 33333334444 899987775 11 122333 33333 579988654444556677778999977677776633
Q ss_pred cCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCC-hHHHHHHH---------------HHcCCHHHHHHHHHhcCC
Q 000428 1028 QNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFD-GPAVGEVA---------------VEAQLYEEAFAIFKKFNL 1091 (1520)
Q Consensus 1028 ~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd-~~~IA~ia---------------~e~~L~EEA~~LYkK~~~ 1091 (1520)
|.+|+.-.+||.-|-.=| ..+.|+.. ..|.+|.|-+.+--++-.
T Consensus 166 --------------------k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 166 --------------------KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred --------------------hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence 334444445544333111 11112211 136677777777777655
Q ss_pred cHHHHHHH--HHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc----CCcchHHHHHHHH-------
Q 000428 1092 NVQAVNVL--LDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA----DDATQFLDVIRAA------- 1158 (1520)
Q Consensus 1092 ~~~Ai~vL--i~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika----~d~s~~~evi~~a------- 1158 (1520)
....++|= |.. . -..|..+ -.-+|--||..|.+.|.++.|-+-|.++ -.-.+|..|-...
T Consensus 226 ~~~slnvdaiiR~--g---i~rftDq--~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~ 298 (835)
T KOG2047|consen 226 KVQSLNVDAIIRG--G---IRRFTDQ--LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESC 298 (835)
T ss_pred hhcccCHHHHHHh--h---cccCcHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHH
Confidence 54444331 111 1 1223333 4468999999999999999999999988 2223333322111
Q ss_pred ---------HhcCChhHHHHH-HHHHhhh---cCCcchhHHHHH--------HHHh-----hCChhhH-HHH---hcC--
Q 000428 1159 ---------EDADVYHDLVRY-LLMVRQK---VKEPKVDSELIY--------AYAK-----IDRLGDI-EEF---ILM-- 1206 (1520)
Q Consensus 1159 ---------~~a~~~e~Li~y-L~m~r~~---~~ep~id~~lv~--------~yAk-----~~~l~el-e~f---l~~-- 1206 (1520)
+..++.++-+++ +.|||.. .+-|-+=++++. .+-| .|+.++. ..| +..
T Consensus 299 ~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vd 378 (835)
T KOG2047|consen 299 VAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVD 378 (835)
T ss_pred HHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccC
Confidence 122333333332 3445531 222222222111 0000 0111111 222 111
Q ss_pred ------cCcchHHHHHhhhhccccHHHHHHHHHhhc--CH---HHHHHHHH-------HhcCHHHHHHHHHHh-------
Q 000428 1207 ------PNVANLQNVGDRLYDDTLYEAAKIIYAFIS--NW---AKLAVTLV-------KLKQFQGAVDAARKA------- 1261 (1520)
Q Consensus 1207 ------~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~--N~---~kLA~~lv-------~L~~y~~Ave~AkKa------- 1261 (1520)
+-..=+-+.|+.+...|+.+.||.+|++.- || ..||.++| +-+++++|..+-++|
T Consensus 379 P~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~ 458 (835)
T KOG2047|consen 379 PKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP 458 (835)
T ss_pred cccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch
Confidence 001112457888999999999999998654 33 33355555 356677777776654
Q ss_pred ----------------CChhhHHHH---HHHHhcchhhhHHHhhccc-cccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1262 ----------------NSAKTWKEV---CFACVDAEEFRLAQICGLN-IIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1262 ----------------~~~k~wk~v---~~acv~~~e~rLA~~~gl~-li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
++.++|.-- -++|=--+.-+.+...=+. .|..|..+.--.-+.|+..+|+|+.+.||+|+
T Consensus 459 ~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 459 ELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 345566521 1111000001111111111 34567777888889999999999999999997
Q ss_pred Cccccccchh----HHHHHHHhccChhhhHHHHHH-HHHhh
Q 000428 1322 GLERAHMGIF----TELGVLYARYRYEKLMEHIKL-FSTRL 1357 (1520)
Q Consensus 1322 ~lerAh~~~f----TeLailyAky~pekLmehlk~-y~~~i 1357 (1520)
.|=+= .+.| |-|-...++|+--| +|+.+- |.+.+
T Consensus 539 ~LFk~-p~v~diW~tYLtkfi~rygg~k-lEraRdLFEqaL 577 (835)
T KOG2047|consen 539 SLFKW-PNVYDIWNTYLTKFIKRYGGTK-LERARDLFEQAL 577 (835)
T ss_pred ccCCC-ccHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 66432 2222 34555666777666 455554 55544
No 79
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.072 Score=64.22 Aligned_cols=208 Identities=16% Similarity=0.138 Sum_probs=125.7
Q ss_pred HcCCHHHHHHHHHhcCCcHH-----HHH-HH----HHhhhhHHHHHHHHHHhCChhHHHHH-----HHHHHhhccHHHHH
Q 000428 1075 EAQLYEEAFAIFKKFNLNVQ-----AVN-VL----LDNIRSIERAVEFAFRVEEDAVWSQV-----AKAQLREGLVSDAI 1139 (1520)
Q Consensus 1075 e~~L~EEA~~LYkK~~~~~~-----Ai~-vL----i~~~~~~~~A~e~Aek~~~~eVw~~l-----gka~l~~~~v~eAI 1139 (1520)
++|.++-|++|.|-++..|+ |.+ ++ ++-..++-+|..||...-+.+-|.-- |..--..|.++.|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 68888888888776554432 111 11 23334566788888764444433321 11122367899999
Q ss_pred HHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHH-hc--C--cCcchH
Q 000428 1140 ESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEF-IL--M--PNVANL 1212 (1520)
Q Consensus 1140 ~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~f-l~--~--~N~a~v 1212 (1520)
++|-+| +|.|| .++.+.- +..+-+.|++++.-+| +. + .|++.|
T Consensus 511 ~~ykeal~ndasc----~ealfni--------------------------glt~e~~~~ldeald~f~klh~il~nn~ev 560 (840)
T KOG2003|consen 511 EFYKEALNNDASC----TEALFNI--------------------------GLTAEALGNLDEALDCFLKLHAILLNNAEV 560 (840)
T ss_pred HHHHHHHcCchHH----HHHHHHh--------------------------cccHHHhcCHHHHHHHHHHHHHHHHhhHHH
Confidence 999998 45444 3333322 3335566777666444 22 2 566666
Q ss_pred -HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHH
Q 000428 1213 -QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283 (1520)
Q Consensus 1213 -~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA 1283 (1520)
-+++..+...++--.|.++|.++. -.++||-+|-+-|+-.+|..+.-. .=-| +.|- +
T Consensus 561 l~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yd---syry----fp~n----i--- 626 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYD---SYRY----FPCN----I--- 626 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhh---cccc----cCcc----h---
Confidence 668888888888888888887665 246777777777776666655433 1000 1111 1
Q ss_pred HhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHh
Q 000428 1284 QICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYA 1339 (1520)
Q Consensus 1284 ~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyA 1339 (1520)
+.++=|..||.+..+++++|.+||++.=++..... |.|-++-+
T Consensus 627 -----------e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k--wqlmiasc 669 (840)
T KOG2003|consen 627 -----------ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK--WQLMIASC 669 (840)
T ss_pred -----------HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH--HHHHHHHH
Confidence 33677889999999999999999998544433222 54555433
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.62 E-value=0.07 Score=59.57 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhc--CCcch------HHHHHHHHHhc--------CChhHHHHHHHHHhhhcCCcch
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRA--DDATQ------FLDVIRAAEDA--------DVYHDLVRYLLMVRQKVKEPKV 1183 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~------~~evi~~a~~a--------~~~e~Li~yL~m~r~~~~ep~i 1183 (1520)
+.|+.+|.++...|+.++|+..|.+. .+|++ +..+-.+.... ++++.-+++++.+-.. .|.-
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCC
Confidence 67899999999999999999998886 33322 11222222222 5677777777754432 2322
Q ss_pred hHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhc-----------CHHHHHHHHHHhcCHH
Q 000428 1184 DSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS-----------NWAKLAVTLVKLKQFQ 1252 (1520)
Q Consensus 1184 d~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~-----------N~~kLA~~lv~L~~y~ 1252 (1520)
... ..++...+. +.+-+ ...-..+|+.++..|+|+.|...|+..- -+..++.+|.++|+++
T Consensus 149 ~~~-~~a~~~~~~---~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 149 EYA-PDAKKRMDY---LRNRL----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred hhH-HHHHHHHHH---HHHHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 111 011111111 11110 0012468899999999999999998763 2457899999999999
Q ss_pred HHHHHHHHh
Q 000428 1253 GAVDAARKA 1261 (1520)
Q Consensus 1253 ~Ave~AkKa 1261 (1520)
+|+++.+..
T Consensus 221 ~A~~~~~~l 229 (235)
T TIGR03302 221 LAQDAAAVL 229 (235)
T ss_pred HHHHHHHHH
Confidence 999988763
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.026 Score=66.44 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=100.4
Q ss_pred hHHH-HHhhhhccccHHHHHHHHHhhcC--------HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHH--HHhcchh
Q 000428 1211 NLQN-VGDRLYDDTLYEAAKIIYAFISN--------WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCF--ACVDAEE 1279 (1520)
Q Consensus 1211 ~v~~-vgd~~~eeg~YeaAk~~y~~~~N--------~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~--acv~~~e 1279 (1520)
+++. +|-++|..|+|+.|...|+.+.| +..||-|+-+||.|.+|-.++-||..+...-...+ |--=+.|
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 5544 78999999999999999998764 66789999999999999999999887655433221 1111112
Q ss_pred hhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccC-hhhhHHHHHHHHHhh-
Q 000428 1280 FRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYR-YEKLMEHIKLFSTRL- 1357 (1520)
Q Consensus 1280 ~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~-pekLmehlk~y~~~i- 1357 (1520)
-++.+.+. ++.=.-+.--+|..-=-.+-+|+|||..|++.+.-++.-.|+=-.+|.+|.|-+ ++--.|-|+.|-+..
T Consensus 138 k~~~~fh~-~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 138 KRILTFHS-SLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHH-HHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 22211100 000000000122222223568999999999999777777777777899999987 555566677775555
Q ss_pred --chHHHHHHHH
Q 000428 1358 --NIPKLIRACD 1367 (1520)
Q Consensus 1358 --Ni~K~i~~ce 1367 (1520)
.|.+=+.+|-
T Consensus 217 dStiA~NLkacn 228 (557)
T KOG3785|consen 217 DSTIAKNLKACN 228 (557)
T ss_pred CcHHHHHHHHHH
Confidence 3444455554
No 82
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.15 Score=64.69 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=103.0
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhcCCcch--------HHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH---
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRADDATQ--------FLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS--- 1185 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~--------~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~--- 1185 (1520)
+..=|-+++|++|-..++..+|..+|-+..+.+- |+-++.-.-+.-...-|-.=| +..+|..=.
T Consensus 351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L-----i~~~~~sPesWc 425 (638)
T KOG1126|consen 351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL-----IDTDPNSPESWC 425 (638)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH-----HhhCCCCcHHHH
Confidence 4455778899999888889999999887744433 333333333221111111111 133443322
Q ss_pred HHHHHHHhhCChhhH-HHH-----hcCcCcchHHHHHhhhhccccHHHHHHHHHh--------hcCHHHHHHHHHHhcCH
Q 000428 1186 ELIYAYAKIDRLGDI-EEF-----ILMPNVANLQNVGDRLYDDTLYEAAKIIYAF--------ISNWAKLAVTLVKLKQF 1251 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~el-e~f-----l~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~--------~~N~~kLA~~lv~L~~y 1251 (1520)
.++.||.-.++-+.. +-| |+..+....--+|-.....+.||.|+.+|.. ++-|.-|+.+|.|.+++
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence 266667665555444 445 2223555666788889999999999999985 44788999999999999
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhc
Q 000428 1252 QGAVDAARKANSAKTWKEVCFACVD 1276 (1520)
Q Consensus 1252 ~~Ave~AkKa~~~k~wk~v~~acv~ 1276 (1520)
+.|-=..+||-+...=.-|+-.|+-
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhh
Confidence 9999999999877666666666663
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=96.40 E-value=0.25 Score=63.11 Aligned_cols=139 Identities=10% Similarity=-0.037 Sum_probs=90.2
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcch---HHHHHHHHHhcCChhHHHHHHHHHhhh--cCCcchhHHHHH
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQ---FLDVIRAAEDADVYHDLVRYLLMVRQK--VKEPKVDSELIY 1189 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~---~~evi~~a~~a~~~e~Li~yL~m~r~~--~~ep~id~~lv~ 1189 (1520)
+.++.|+.+|.++...|+.++|+..|.++ -||.+ +.....+++..|++++-+.+++.+... ..+|..-..++.
T Consensus 370 ~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 370 ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVM 449 (553)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 36788999999999999999999999988 45553 333344577788888888888765443 234444445888
Q ss_pred HHHhhCChhhHHHHhcC-----cC-cchHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHH
Q 000428 1190 AYAKIDRLGDIEEFILM-----PN-VANLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAV 1255 (1520)
Q Consensus 1190 ~yAk~~~l~ele~fl~~-----~N-~a~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Av 1255 (1520)
+|+..|++++...++.. +. ......++..+...|+ .|...+.... |+.-++.+|.-.|+=+.|.
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~ 527 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEK 527 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHH
Confidence 88889998888666443 11 1122445555555553 4443333222 4555677777777766666
Q ss_pred HH
Q 000428 1256 DA 1257 (1520)
Q Consensus 1256 e~ 1257 (1520)
-.
T Consensus 528 ~~ 529 (553)
T PRK12370 528 MW 529 (553)
T ss_pred HH
Confidence 66
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.016 Score=67.51 Aligned_cols=90 Identities=23% Similarity=0.329 Sum_probs=73.1
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhcC--------HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHH
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFISN--------WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~N--------~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA 1283 (1520)
+..=|++++++++|++|...|+..-. |+.=|-.|.+||+|..||+.|++|-. +|-.-+|.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-----------iDp~yska- 151 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-----------IDPHYSKA- 151 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-----------cChHHHHH-
Confidence 45579999999999999999997652 45559999999999999999999652 22222233
Q ss_pred HhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1284 QICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1284 ~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
+.-|...|...|+|++++..|++|+.++..
T Consensus 152 -------------y~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 152 -------------YGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred -------------HHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 336668899999999999999999999887
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.52 Score=55.80 Aligned_cols=120 Identities=14% Similarity=0.236 Sum_probs=90.4
Q ss_pred HHHHHHHhhCChhhH----HHHhcCcCcc------hHHHHHhhhhccccHHHHHHHHHhhcC---H-----HHHHHHHHH
Q 000428 1186 ELIYAYAKIDRLGDI----EEFILMPNVA------NLQNVGDRLYDDTLYEAAKIIYAFISN---W-----AKLAVTLVK 1247 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~el----e~fl~~~N~a------~v~~vgd~~~eeg~YeaAk~~y~~~~N---~-----~kLA~~lv~ 1247 (1520)
.|+.-|+..|..+.. +..+.+|+.. .++++|.-++..|.|+-|-.+|...-+ | -+|..+|..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 378888888887765 4556665533 468899999999999999999997664 3 357889999
Q ss_pred hcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccc
Q 000428 1248 LKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLER 1325 (1520)
Q Consensus 1248 L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~ler 1325 (1520)
-++|++||+.|++-..-.. +...+.+||.|= ||...+....+++.++.++++|+.-+.
T Consensus 154 treW~KAId~A~~L~k~~~---------q~~~~eIAqfyC-----------ELAq~~~~~~~~d~A~~~l~kAlqa~~ 211 (389)
T COG2956 154 TREWEKAIDVAERLVKLGG---------QTYRVEIAQFYC-----------ELAQQALASSDVDRARELLKKALQADK 211 (389)
T ss_pred hhHHHHHHHHHHHHHHcCC---------ccchhHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHhhCc
Confidence 9999999999997332111 122467777644 777788888899999999999975443
No 86
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.39 Score=58.93 Aligned_cols=238 Identities=15% Similarity=0.214 Sum_probs=156.2
Q ss_pred HHHHHHHhhccHHHHHHHHHhc-CC----cchHH-HHHHHHHhcCChhHHHHHHHHHhhhcCCcc----hhH--HHHHHH
Q 000428 1124 QVAKAQLREGLVSDAIESFIRA-DD----ATQFL-DVIRAAEDADVYHDLVRYLLMVRQKVKEPK----VDS--ELIYAY 1191 (1520)
Q Consensus 1124 ~lgka~l~~~~v~eAI~~Yika-~d----~s~~~-evi~~a~~a~~~e~Li~yL~m~r~~~~ep~----id~--~lv~~y 1191 (1520)
-+++++....+.++++..+..- +. ...+. ....+.+..-+++..+.-....|+. ||+ +|+ .++|..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHH
Confidence 3677776666888888876543 11 11111 3334455566777777777777765 564 444 377777
Q ss_pred HhhCChhhHHHHhcCcCcchHHH---HHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1192 AKIDRLGDIEEFILMPNVANLQN---VGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1192 Ak~~~l~ele~fl~~~N~a~v~~---vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.+..++.-|-.++...+---.+. ||+.+.=-++.|.|...|+..- -|-=++.=|+.++.-.+||++.|.
T Consensus 310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 76677777766654444333333 7888888889999999998654 344458889999999999999999
Q ss_pred hCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhc
Q 000428 1261 ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYAR 1340 (1520)
Q Consensus 1261 a~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAk 1340 (1520)
|-+... .++| ||. +|...|+-.+-..+++.+|+++..+-....-|.+-||-+|.|
T Consensus 390 Avdi~p-----------~DyR-AWY-------------GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 390 AVDINP-----------RDYR-AWY-------------GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHhcCc-----------hhHH-HHh-------------hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 863311 1222 343 666777878878888888888877777777777778888855
Q ss_pred cChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1341 YRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNH 1395 (1520)
Q Consensus 1341 y~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h 1395 (1520)
..++-|++|.|+..+....+ +....-.+.-||-+.++..+|+..++.-
T Consensus 445 --l~~~~eAiKCykrai~~~dt-----e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 445 --LNRLEEAIKCYKRAILLGDT-----EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred --hccHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677788888877755432 1222334555666666666666555544
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.058 Score=67.21 Aligned_cols=247 Identities=17% Similarity=0.183 Sum_probs=155.4
Q ss_pred CCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHH
Q 000428 1063 NFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESF 1142 (1520)
Q Consensus 1063 nyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Y 1142 (1520)
+=|+-+.+....+.|..-+|+-.|.- ||. +.-...|.|-+||..|-..+.=.-||..+
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEA------AVk----------------qdP~haeAW~~LG~~qaENE~E~~ai~AL 342 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEA------AVK----------------QDPQHAEAWQKLGITQAENENEQNAISAL 342 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHH------HHh----------------hChHHHHHHHHhhhHhhhccchHHHHHHH
Confidence 44555666666666666666665544 111 12335689999999998777777889998
Q ss_pred Hhc--CCcchHHHHHHH-------HHhcCChhHHHHHHHHHhh----hcCCcchhHHHHHHHHhhCChhhH-HHHhcC--
Q 000428 1143 IRA--DDATQFLDVIRA-------AEDADVYHDLVRYLLMVRQ----KVKEPKVDSELIYAYAKIDRLGDI-EEFILM-- 1206 (1520)
Q Consensus 1143 ika--~d~s~~~evi~~-------a~~a~~~e~Li~yL~m~r~----~~~ep~id~~lv~~yAk~~~l~el-e~fl~~-- 1206 (1520)
.+| -||.+-..+... -++..-...|-+|+.+-=+ ...-+.-+...-..+...+.+..+ +-||..
T Consensus 343 ~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 343 RRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR 422 (579)
T ss_pred HHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH
Confidence 888 677776533322 2223344556666665211 000000000000111222333445 455543
Q ss_pred ----cCcchHHH-HHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChh-----hHH
Q 000428 1207 ----PNVANLQN-VGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAK-----TWK 1268 (1520)
Q Consensus 1207 ----~N~a~v~~-vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k-----~wk 1268 (1520)
.-.++|+. +|=.+.-.|.|+-|.++|++.- -|.||+-+|---.+..+||+++++|-.-+ +|+
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 25678866 9999999999999999999764 79999999999999999999999976543 342
Q ss_pred HHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc---ccchhHHHHHHHhccChhh
Q 000428 1269 EVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA---HMGIFTELGVLYARYRYEK 1345 (1520)
Q Consensus 1269 ~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA---h~~~fTeLailyAky~pek 1345 (1520)
-+. -.|...|.|.||+..|=.++.+.+. |+. +.-.-++
T Consensus 503 Nlg------------------------------IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~---------~~~~se~ 543 (579)
T KOG1125|consen 503 NLG------------------------------ISCMNLGAYKEAVKHLLEALSMQRKSRNHNK---------APMASEN 543 (579)
T ss_pred hhh------------------------------hhhhhhhhHHHHHHHHHHHHHhhhccccccc---------CCcchHH
Confidence 222 2345567777777777666655554 433 0111578
Q ss_pred hHHHHHHHHHhhchHH-HHHHHHhhc
Q 000428 1346 LMEHIKLFSTRLNIPK-LIRACDEQQ 1370 (1520)
Q Consensus 1346 Lmehlk~y~~~iNi~K-~i~~ce~~~ 1370 (1520)
+++.||.+-+-++-+. +.++|..+.
T Consensus 544 iw~tLR~als~~~~~D~l~~a~~~~n 569 (579)
T KOG1125|consen 544 IWQTLRLALSAMNRSDLLQEAAPSRN 569 (579)
T ss_pred HHHHHHHHHHHcCCchHHHHhccccC
Confidence 8999999888888777 667776543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.11 E-value=1.9 Score=54.91 Aligned_cols=294 Identities=13% Similarity=0.085 Sum_probs=140.6
Q ss_pred HhhCchHHHHHHHHHhCCChHHH------HHHHHHcCCHHHHHHHHHh-------cCCcHHHHHHHH----H----hhhh
Q 000428 1047 IKADPSRVMDYVNRLDNFDGPAV------GEVAVEAQLYEEAFAIFKK-------FNLNVQAVNVLL----D----NIRS 1105 (1520)
Q Consensus 1047 ~k~d~~kl~~yI~~ldnyd~~~I------A~ia~e~~L~EEA~~LYkK-------~~~~~~Ai~vLi----~----~~~~ 1105 (1520)
..-++++..+++....+.=..++ |++..+.|.++||..+|++ +..|-..+..++ . +...
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 55678888888877764433333 8899999999999999997 111111111111 0 0000
Q ss_pred HHH-HHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh---
Q 000428 1106 IER-AVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK--- 1177 (1520)
Q Consensus 1106 ~~~-A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~--- 1177 (1520)
... --+++++-.....--++.=..+.+..++..++.|++. |=|+-|..+-....+..+-.-+...+..-+..
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 000 1122222111122122222223344566666666554 77777777765555444443333333332211
Q ss_pred -cCCcchh-------HHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHh--------hcCHHHH
Q 000428 1178 -VKEPKVD-------SELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAF--------ISNWAKL 1241 (1520)
Q Consensus 1178 -~~ep~id-------~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~--------~~N~~kL 1241 (1520)
..-+..+ +.++. -+.=++..+-..|+|+.|...+.. ++-|.--
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw---------------------~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~K 234 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLW---------------------TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTK 234 (517)
T ss_pred cCCCCCccccccCCchHHHH---------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 0000000 00000 001123334445555555555442 1233334
Q ss_pred HHHHHHhcCHHHHHHHHHHhCChhhHHH-----HHHHHhcchhhhHHH-hhccccccc--c-cc---------HHHHHHH
Q 000428 1242 AVTLVKLKQFQGAVDAARKANSAKTWKE-----VCFACVDAEEFRLAQ-ICGLNIIVQ--V-DD---------LEEVSEY 1303 (1520)
Q Consensus 1242 A~~lv~L~~y~~Ave~AkKa~~~k~wk~-----v~~acv~~~e~rLA~-~~gl~li~~--~-d~---------l~elv~~ 1303 (1520)
|++|.|.|++++|.+...+|.+-++-.. .+..++.+|+++.|. .+++=.--+ | .. .-+..+.
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 6666666666666655555554444432 233444555555554 122111100 1 11 2477789
Q ss_pred HHhcCCHHHHHHHHHhhcCccccccc------hhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHH
Q 000428 1304 YQNRGYFNELISLMESGLGLERAHMG------IFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRAC 1366 (1520)
Q Consensus 1304 Ye~~G~f~eLI~Lle~gl~lerAh~~------~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~c 1366 (1520)
|.+.|.+..|+..|.... +.+.- -|. .++.=|..+.-..+.|+.=-+-...|--++++
T Consensus 315 ~~r~~~~~~ALk~~~~v~---k~f~~~~~DQfDFH--~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa 378 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVL---KHFDDFEEDQFDFH--SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAA 378 (517)
T ss_pred HHHHhhHHHHHHHHHHHH---HHHHHHhcccccHH--HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 999999999999998773 22111 111 33444555555666666633333556556665
No 89
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.02 E-value=0.29 Score=65.30 Aligned_cols=182 Identities=8% Similarity=0.025 Sum_probs=112.2
Q ss_pred HHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1242 AVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1242 A~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
|.+|...|+|++|++..+++-..+.= + ++-+-.++..|-+.|..++++..+++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-----------n--------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-----------N--------------PDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-----------C--------------HHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 55777778888888888875322110 0 0112355677777888888888888887
Q ss_pred CccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhh-
Q 000428 1322 GLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAW- 1400 (1520)
Q Consensus 1322 ~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~- 1400 (1520)
..+.. .. +-++.+|..-..++..+.++.|.+-+... +.+...+.+.+.+....|-.+.|...|.+|| +.|
T Consensus 164 ~~dp~-~~--~~l~layL~~~~~~~~~AL~~~ekll~~~-----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-~~f~ 234 (822)
T PRK14574 164 ERDPT-VQ--NYMTLSYLNRATDRNYDALQASSEAVRLA-----PTSEEVLKNHLEILQRNRIVEPALRLAKENP-NLVS 234 (822)
T ss_pred ccCcc-hH--HHHHHHHHHHhcchHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc-cccC
Confidence 66554 12 22444555444666667777777766665 6677778888888888888888888888884 433
Q ss_pred -------cchhhHHHHHhh-----------hhhHHHHHHHHHHHh---hCcc-------hHHHHHHHHhhcCCHHHHHHH
Q 000428 1401 -------DHMQFKDVAVKV-----------ANVELYYKAVHFYLQ---EHPD-------LINDLLNVLALRVDHTRVVDI 1452 (1520)
Q Consensus 1401 -------~h~~fk~ii~kv-----------an~elyYkai~FyL~---~~P~-------~l~dlL~~l~~rlD~~rvV~~ 1452 (1520)
+|+.+-+.+-.- .-+|--+...+-++. ..|. ...|.|-.|..+.++..||+.
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 233333322000 011111222333333 2342 234889999999999999998
Q ss_pred HHhcC
Q 000428 1453 MRKAG 1457 (1520)
Q Consensus 1453 ~~k~~ 1457 (1520)
.+.-.
T Consensus 315 y~~l~ 319 (822)
T PRK14574 315 YEAME 319 (822)
T ss_pred HHHhh
Confidence 87643
No 90
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.95 Score=59.32 Aligned_cols=312 Identities=16% Similarity=0.164 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhc---CCcchhHH-HHHH-----H
Q 000428 1121 VWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKV---KEPKVDSE-LIYA-----Y 1191 (1520)
Q Consensus 1121 Vw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~---~ep~id~~-lv~~-----y 1191 (1520)
|+-+-|..+-..+++..|-++|=++ .+.|.+|.=-+....+++.|..||.. |.. .+-++.-. |+.| +
T Consensus 391 Vl~~qAdf~f~~k~y~~AA~~yA~t--~~~FEEVaLKFl~~~~~~~L~~~L~K--KL~~lt~~dk~q~~~Lv~WLlel~L 466 (911)
T KOG2034|consen 391 VLLKQADFLFQDKEYLRAAEIYAET--LSSFEEVALKFLEINQERALRTFLDK--KLDRLTPEDKTQRDALVTWLLELYL 466 (911)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh--hhhHHHHHHHHHhcCCHHHHHHHHHH--HHhhCChHHHHHHHHHHHHHHHHHH
Confidence 3334444444455677788888765 77899999999999999999999994 322 23333333 3333 4
Q ss_pred HhhCChh-hHHHHhcC-------------------cCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCH
Q 000428 1192 AKIDRLG-DIEEFILM-------------------PNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQF 1251 (1520)
Q Consensus 1192 Ak~~~l~-ele~fl~~-------------------~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y 1251 (1520)
.+.+++. ..++++.. .--.+-+.+=..+-++|+.+.+..+=.-+.+|.-+..-+++-+.|
T Consensus 467 ~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~y 546 (911)
T KOG2034|consen 467 EQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENY 546 (911)
T ss_pred HHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665 22333221 112233567778889999999998888999999999999999999
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhc--chhhhHHHhhccccccccccHHHHHHHHHhcC---CHHHHHHHHHhhcCcccc
Q 000428 1252 QGAVDAARKANSAKTWKEVCFACVD--AEEFRLAQICGLNIIVQVDDLEEVSEYYQNRG---YFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1252 ~~Ave~AkKa~~~k~wk~v~~acv~--~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G---~f~eLI~Lle~gl~lerA 1326 (1520)
.+|.+.-.+.+++....+.+-.-+. -.+.--+|+.- .=...+..+..+..++...+ .-.+++.+++-..+.-..
T Consensus 547 eeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~-~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~ 625 (911)
T KOG2034|consen 547 EEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQ-KDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGM 625 (911)
T ss_pred HHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHc-cccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccC
Confidence 9999999999999877653211110 11111222211 11223455677888888773 566778888766321111
Q ss_pred -ccchhHHHHHHHhccChhhhHHHHHHH-----HHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcC----
Q 000428 1327 -HMGIFTELGVLYARYRYEKLMEHIKLF-----STRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHS---- 1396 (1520)
Q Consensus 1327 -h~~~fTeLailyAky~pekLmehlk~y-----~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~---- 1396 (1520)
..++.--|-.+||+..|+.++=.+... .-.+++.=++|.|.+..-=+-.||+|+-.+-|..|+..-..--
T Consensus 626 ~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d~dla 705 (911)
T KOG2034|consen 626 TNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFDIDLA 705 (911)
T ss_pred cCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcCHHHH
Confidence 133444466699999999987766552 1234777788999986666667777777776666664433321
Q ss_pred -----chhhcchhhHHHHHhhhhhHH-----HHHHHHHHHhhCcchHHHHH
Q 000428 1397 -----PEAWDHMQFKDVAVKVANVEL-----YYKAVHFYLQEHPDLINDLL 1437 (1520)
Q Consensus 1397 -----~~a~~h~~fk~ii~kvan~el-----yYkai~FyL~~~P~~l~dlL 1437 (1520)
..--+.+..|.+-.++++--+ ..+++.|..+..=..+.|+|
T Consensus 706 k~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~ikk~i~~Lk~~~lLkiedlL 756 (911)
T KOG2034|consen 706 KVIANDPEEDEDLRKKLWLKIAKHVVKQENDIKKAIRFLKENELLTIEDLL 756 (911)
T ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhccCcccchhhhh
Confidence 011334456565555554322 34566665553224444443
No 91
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.00 E-value=0.074 Score=62.45 Aligned_cols=198 Identities=17% Similarity=0.164 Sum_probs=140.6
Q ss_pred HHHHHHHhhccHHHHHHHHHhc----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH---HHHHHHHhhCC
Q 000428 1124 QVAKAQLREGLVSDAIESFIRA----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS---ELIYAYAKIDR 1196 (1520)
Q Consensus 1124 ~lgka~l~~~~v~eAI~~Yika----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~---~lv~~yAk~~~ 1196 (1520)
++||.|++.|...+|-..+-.+ .-|+-|.-+-+...+-++|+.-+...... ...-|.=-| .....+--.++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~g--ld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEG--LDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhh--hhcCCchhhhhhhhHHHHHHHHh
Confidence 6899999999888887776555 55677777777777778887665555421 122222222 12233344455
Q ss_pred hhhHHHH------hcCcCcchHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1197 LGDIEEF------ILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1197 l~ele~f------l~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
.++.-++ +...|+-.+--||--+|-.+.-|-|.-.|..+- -|..|+.|..+-++|+-+.-+..+|.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 5554333 223455455558888999999999999999775 68899999999999988888877776
Q ss_pred Ch--------hhHHHHHHHHhcchhhhHHHhhc-cccccccccHHHHHHH---HHhcCCHHHHHHHHHhhcCc
Q 000428 1263 SA--------KTWKEVCFACVDAEEFRLAQICG-LNIIVQVDDLEEVSEY---YQNRGYFNELISLMESGLGL 1323 (1520)
Q Consensus 1263 ~~--------k~wk~v~~acv~~~e~rLA~~~g-l~li~~~d~l~elv~~---Ye~~G~f~eLI~Lle~gl~l 1323 (1520)
++ ++|+-+-+-.|..|+|-+|..|. |-+..+|++-+.+.+. --+.|+.+++-+||..+..+
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 54 56988899999999999999886 3366677776665543 45789999999999888543
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.99 E-value=0.41 Score=53.47 Aligned_cols=163 Identities=15% Similarity=0.026 Sum_probs=101.8
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcch------HHHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQ------FLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSE 1186 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~------~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~ 1186 (1520)
-..++.++.+|.++...|+.++|+..|.+. .+|.+ +.....+....+++++-+.+++.+... ..+|.++-.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 346789999999999999999999998766 34432 234556777789999999999876443 344444322
Q ss_pred ---HHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhc-------------------------CH
Q 000428 1187 ---LIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS-------------------------NW 1238 (1520)
Q Consensus 1187 ---lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~-------------------------N~ 1238 (1520)
++.++.+. +++...+.|+++.|...|.++- -.
T Consensus 110 ~~~~g~~~~~~--------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQ--------------------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHHHh--------------------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 33333322 0111111233333333333221 01
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHH
Q 000428 1239 AKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLME 1318 (1520)
Q Consensus 1239 ~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle 1318 (1520)
..+|..|.+.|+|++|++..+++-+. +-++....-| +-.++..|...|.+++++.+++
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~a-------------~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVEN---------YPDTPATEEA-------------LARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH---------CCCCcchHHH-------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 25788899999999999988885322 1111112222 2367788999999999999886
Q ss_pred hh
Q 000428 1319 SG 1320 (1520)
Q Consensus 1319 ~g 1320 (1520)
.-
T Consensus 228 ~l 229 (235)
T TIGR03302 228 VL 229 (235)
T ss_pred HH
Confidence 54
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.92 E-value=0.11 Score=62.97 Aligned_cols=213 Identities=14% Similarity=0.280 Sum_probs=139.8
Q ss_pred EEEcCCCCC-ccccccCccccccc-----CCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeE
Q 000428 52 IIDMNQPMQ-PLRRPITADSALMN-----PNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKML 125 (1520)
Q Consensus 52 Ivdl~~~~~-~~r~pi~AdsAimn-----P~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l 125 (1520)
+-||....- ...+|-.-+--.|+ |.+++||+-|. ...+.+-..-|++=+.++.++-.|.=-+|-|+.+.
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-----CceEEeehhhhhhhhheeeeccEEeeEEEecCCcE
Confidence 346654332 23444444433443 77899999876 67899999999999999999998998999999888
Q ss_pred EEEe--cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccc----c
Q 000428 126 GVVT--QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ----Q 199 (1520)
Q Consensus 126 ~lVT--~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er----~ 199 (1520)
-+++ ..-||||++... .-...|--.+.+-++ ....+.++.|++. |- =.|-+-+|+-+. .
T Consensus 359 l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gt---s~~~S~ng~ylA~-GS----------~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGT---SLCISLNGSYLAT-GS----------DSGIVNIYDGNSCFAST 423 (514)
T ss_pred EEEEcCCceEEEEecCCc-ceEEEEeecCcccee---eeeecCCCceEEe-cc----------CcceEEEeccchhhccC
Confidence 8777 779999999644 222234334444443 3456777777763 31 245555665221 1
Q ss_pred cccccch---hhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCC-CCCcce
Q 000428 200 RSQALEA---HAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDF-ADDFPV 275 (1520)
Q Consensus 200 ~sQ~ieg---haa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~-~~DFPv 275 (1520)
--+|+-. -.-+-.++ ...+.++|+|.|.+.... -|+++-+.+. ..|. .||+.. .--|+-
T Consensus 424 ~PkPik~~dNLtt~Itsl---~Fn~d~qiLAiaS~~~kn-----alrLVHvPS~---TVFs------NfP~~n~~vg~vt 486 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSL---QFNHDAQILAIASRVKKN-----ALRLVHVPSC---TVFS------NFPTSNTKVGHVT 486 (514)
T ss_pred CCCchhhhhhhheeeeee---eeCcchhhhhhhhhcccc-----ceEEEeccce---eeec------cCCCCCCcccceE
Confidence 1122211 11111112 225678999999996442 2777766443 2342 355554 678999
Q ss_pred eEEeccccceEEEEeccceEEEEecc
Q 000428 276 AMQISHKYGLIYVITKLGLLFVYDLE 301 (1520)
Q Consensus 276 ~mqvs~k~g~iyviTK~G~l~lyDl~ 301 (1520)
+|-.|+.=|..-|-++.|-+|||-+.
T Consensus 487 c~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999999874
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=1.8 Score=54.60 Aligned_cols=348 Identities=17% Similarity=0.191 Sum_probs=172.1
Q ss_pred hCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHH----HhhhhHHHHHHHHHHhC-------
Q 000428 1049 ADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLL----DNIRSIERAVEFAFRVE------- 1117 (1520)
Q Consensus 1049 ~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi----~~~~~~~~A~e~Aek~~------- 1117 (1520)
.+++|+-.-|+++ +-+..+++-++ +|..+|.+-++|++|++|+- ++.+--..+.+.+.+..
T Consensus 63 ~~y~ra~~lit~~-~le~~d~~cry-------L~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~ 134 (611)
T KOG1173|consen 63 RQYERAAHLITTY-KLEKRDIACRY-------LAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGED 134 (611)
T ss_pred hHHHHHHHHHHHh-hhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccc
Confidence 3677777777666 33333333333 67788888899999999997 43322223333233322
Q ss_pred -----ChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHHHHHHh-----cCChhHHHHHHHHHhhhcCCcchhH
Q 000428 1118 -----EDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVIRAAED-----ADVYHDLVRYLLMVRQKVKEPKVDS 1185 (1520)
Q Consensus 1118 -----~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi~~a~~-----a~~~e~Li~yL~m~r~~~~ep~id~ 1185 (1520)
+..+.+.=||.|-.....++|-++|.+| -|+.||.+....-.. .+.++.+ . .+--.+..+.|-
T Consensus 135 ~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll-~----~l~~a~~~~ed~ 209 (611)
T KOG1173|consen 135 LMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELL-E----SLDLAMLTKEDV 209 (611)
T ss_pred ccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHH-h----cccHHhhhhhHH
Confidence 3345566688888888899999999999 788887743322111 0111111 1 000011222222
Q ss_pred HHHHHHHhhC-----Chhh---H--HHHhcCcCcchH-HHHHhhhhccccHHHHHHHHHhhc------------------
Q 000428 1186 ELIYAYAKID-----RLGD---I--EEFILMPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS------------------ 1236 (1520)
Q Consensus 1186 ~lv~~yAk~~-----~l~e---l--e~fl~~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~------------------ 1236 (1520)
+.+..+-+.. +... . +.-+...++.++ -+.+|+|+..++|+.-..+.+...
T Consensus 210 e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~ 289 (611)
T KOG1173|consen 210 ERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLY 289 (611)
T ss_pred HHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHH
Confidence 2222111111 0000 0 111122334444 446666666666665555554333
Q ss_pred ------------------------CHHHHHHHHHHhcCHHHHHHHHHHhCChh-hHHH----------------HHHHHh
Q 000428 1237 ------------------------NWAKLAVTLVKLKQFQGAVDAARKANSAK-TWKE----------------VCFACV 1275 (1520)
Q Consensus 1237 ------------------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k-~wk~----------------v~~acv 1275 (1520)
-|..+|.-|.-.|++.+|..+.-||.--+ ++.. -.-+|+
T Consensus 290 el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 290 ELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 23333444555666666666666654221 2211 011333
Q ss_pred cchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHH
Q 000428 1276 DAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFST 1355 (1520)
Q Consensus 1276 ~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~ 1355 (1520)
....||..-|-+|. -=+.-.|-..++++=|-++|..+.++-....-+.-|+|.. .|+-+-.-++++-|..
T Consensus 370 -~tAarl~~G~hlP~-------LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv--ay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 370 -FTAARLMPGCHLPS-------LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV--AYTYEEYPEALKYFQK 439 (611)
T ss_pred -HHHHHhccCCcchH-------HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe--eehHhhhHHHHHHHHH
Confidence 11222222222111 1234556667777777777777777776666666677763 3445555556666655
Q ss_pred hhchHHHHHHHHh-----hcchHHHHHHHHhhccHHHHHHHHHhc----CchhhcchhhHHHHHhhhhhHHHHHHHHHH
Q 000428 1356 RLNIPKLIRACDE-----QQHWKELTYLYIQYDEFDNAATTIMNH----SPEAWDHMQFKDVAVKVANVELYYKAVHFY 1425 (1520)
Q Consensus 1356 ~iNi~K~i~~ce~-----~~lW~E~vfLy~~~~e~d~A~~~mi~h----~~~a~~h~~fk~ii~kvan~elyYkai~Fy 1425 (1520)
.+ .+++..-+ .-+|..+-.+|.+-+.++.|+.---.+ |.++--|..--=|-..++|.+ +||+||
T Consensus 440 ~l---~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld---~Aid~f 512 (611)
T KOG1173|consen 440 AL---EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD---KAIDHF 512 (611)
T ss_pred HH---HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH---HHHHHH
Confidence 55 11111111 122444455566667777777544444 222222222222333345555 566655
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.099 Score=60.05 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=100.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc---
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--- 1145 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--- 1145 (1520)
.++..+..|.+++|...++| |.... -++.+.|+-+|-+|...|+.++|=.-|.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rk--------------------A~~l~--p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRK--------------------AARLA--PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred HHHHHHHhcchHHHHHHHHH--------------------HhccC--CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 35666778888888887777 33333 349999999999999999999999999998
Q ss_pred --CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHHHHHHHHhhCChhhHHHHhcC
Q 000428 1146 --DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSELIYAYAKIDRLGDIEEFILM 1206 (1520)
Q Consensus 1146 --~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~lv~~yAk~~~l~ele~fl~~ 1206 (1520)
++|+-..++-...+-.|++++=..||..++.. ..++.|++.|++...+.|++++.|+-+..
T Consensus 164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 89999999999999999999999999999985 66999999999999999999999887543
No 96
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.12 Score=58.67 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCCc----chHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCCh
Q 000428 1122 WSQVAKAQLREGLVSDAIESFIRADDA----TQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRL 1197 (1520)
Q Consensus 1122 w~~lgka~l~~~~v~eAI~~Yika~d~----s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l 1197 (1520)
|+.-|.+++. |-+++.|+++. ++|++. .-|++..+|++-++-|..|-. .|-..||+
T Consensus 50 w~~AG~aflk------aA~~h~k~~skhDaat~YveA-~~cykk~~~~eAv~cL~~aie-------------Iyt~~Grf 109 (288)
T KOG1586|consen 50 WSAAGDAFLK------AADLHLKAGSKHDAATTYVEA-ANCYKKVDPEEAVNCLEKAIE-------------IYTDMGRF 109 (288)
T ss_pred HHHHHHHHHH------HHHHHHhcCCchhHHHHHHHH-HHHhhccChHHHHHHHHHHHH-------------HHHhhhHH
Confidence 4444444433 44555555432 122222 347777899999999996433 37777887
Q ss_pred hhHHHHhcCcCcchHHHHHhhhhcc-ccHHHHHHHHHhhcCHHHH-------HHHHH-------HhcCHHHHHHHH
Q 000428 1198 GDIEEFILMPNVANLQNVGDRLYDD-TLYEAAKIIYAFISNWAKL-------AVTLV-------KLKQFQGAVDAA 1258 (1520)
Q Consensus 1198 ~ele~fl~~~N~a~v~~vgd~~~ee-g~YeaAk~~y~~~~N~~kL-------A~~lv-------~L~~y~~Ave~A 1258 (1520)
...-.| -.++|+.+..+ .+++.|...|+....|.+- --|++ .+++|++|++..
T Consensus 110 ~~aAk~--------~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 110 TMAAKH--------HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred HHHHhh--------hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555 46788989888 9999999999988877664 23444 367777777653
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.66 E-value=1.6 Score=49.20 Aligned_cols=224 Identities=10% Similarity=0.104 Sum_probs=119.9
Q ss_pred CCeEEEEEcCCCCCcccccc--CcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCe
Q 000428 47 QNSVVIIDMNQPMQPLRRPI--TADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKM 124 (1520)
Q Consensus 47 ~~~v~Ivdl~~~~~~~r~pi--~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~ 124 (1520)
++.|.++|+.......+-+. .......+|..+.+++-+. ....|.+||+++.+.+..+.....+.--.|-.+..
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE----DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK 127 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC----CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC
Confidence 34899999876543222222 2234456788877766421 14589999999877666655433344445654444
Q ss_pred EEEEecC---cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccc
Q 000428 125 LGVVTQT---SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRS 201 (1520)
Q Consensus 125 l~lVT~~---aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~s 201 (1520)
+.+++.. .++.|+.++.. ..... ..+..+..-..+++++|+++.+- ..|.+.+|+.+.+..
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~-~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~----------~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYE-IVDNV-----LVDQRPRFAEFTADGKELWVSSE----------IGGTVSVIDVATRKV 191 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCe-EEEEE-----EcCCCccEEEECCCCCEEEEEcC----------CCCEEEEEEcCccee
Confidence 4444432 35566764321 11110 01223334566889998876542 257889998886532
Q ss_pred -cccchhh-----ccce--eeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCc
Q 000428 202 -QALEAHA-----ASFA--QFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDF 273 (1520)
Q Consensus 202 -Q~iegha-----a~F~--~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DF 273 (1520)
.-+..+. ..+. .+.+. +....+ |+.-... ..++|+++... . .. + .+ + ....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s--~dg~~~--~~~~~~~-----~~i~v~d~~~~--~--~~-~--~~--~---~~~~ 250 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLT--KDGKTA--FVALGPA-----NRVAVVDAKTY--E--VL-D--YL--L---VGQR 250 (300)
T ss_pred eeeeeecccccccccCCccceEEC--CCCCEE--EEEcCCC-----CeEEEEECCCC--c--EE-E--EE--E---eCCC
Confidence 2222211 1110 11111 111111 2211111 45888887431 1 11 1 11 1 1345
Q ss_pred ceeEEeccccceEEEEe-ccceEEEEeccchhhhhhccc
Q 000428 274 PVAMQISHKYGLIYVIT-KLGLLFVYDLETAAAVYRNRI 311 (1520)
Q Consensus 274 Pv~mqvs~k~g~iyviT-K~G~l~lyDl~tg~~i~~~rI 311 (1520)
|.++.+++.-..||+.. ..|-|.+||++++.++-+-++
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 77788888777777653 579999999999988765544
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=3.7 Score=52.12 Aligned_cols=123 Identities=19% Similarity=0.114 Sum_probs=80.0
Q ss_pred CcchH-HHHHhhhhccccHHHHHHHHH--------hhcCHHHH-------HHHHHHhcCHHHHHHHHHHhCChhhHHHHH
Q 000428 1208 NVANL-QNVGDRLYDDTLYEAAKIIYA--------FISNWAKL-------AVTLVKLKQFQGAVDAARKANSAKTWKEVC 1271 (1520)
Q Consensus 1208 N~a~v-~~vgd~~~eeg~YeaAk~~y~--------~~~N~~kL-------A~~lv~L~~y~~Ave~AkKa~~~k~wk~v~ 1271 (1520)
|+..| ...+...+..|+.+.|..+++ ++.++..+ ...|.+.+.-..|.+.-.+| --|-...
T Consensus 374 ~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~A---i~~~~~~ 450 (652)
T KOG2376|consen 374 KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSA---IKWWRKQ 450 (652)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHH---HHHHHHh
Confidence 33445 668889999999999999999 66655443 55556666666665555552 1232222
Q ss_pred HHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHH
Q 000428 1272 FACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLME 1348 (1520)
Q Consensus 1272 ~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLme 1348 (1520)
.+|- + .....+.+.+.+=.+.|.-+|+.++|+.-........-.---|+.+||+.+|++=.+
T Consensus 451 ~t~s--~-------------~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~ 512 (652)
T KOG2376|consen 451 QTGS--I-------------ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAES 512 (652)
T ss_pred cccc--h-------------HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHH
Confidence 2222 0 111225677788888899999999999987654443333345789999999999533
No 99
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.40 E-value=0.3 Score=61.35 Aligned_cols=239 Identities=20% Similarity=0.199 Sum_probs=133.8
Q ss_pred hHHHHHHHHHh-CCCC-HHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCC
Q 000428 1001 QVSAAVKAFMT-ADLP-HELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQL 1078 (1520)
Q Consensus 1001 ~vs~~Vkaf~~-a~lp-~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L 1078 (1520)
++.++-|||.. .++| .+||.-|++.-.+ |+-- ..+|. |.+|--.|-
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~r-ge~P-----~~iLl--------------------------A~~~Ay~gK 647 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKR-GETP-----NDLLL--------------------------ADVFAYQGK 647 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCc-----hHHHH--------------------------HHHHHhhhh
Confidence 56677788884 7888 7888888873322 2211 12333 334445677
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCC---hhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHH
Q 000428 1079 YEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEE---DAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVI 1155 (1520)
Q Consensus 1079 ~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~---~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi 1155 (1520)
+.||..||+++|.-..|++.-- +...+|.|.||.-.-.. .++--+=|..--+...-+-|-+..|.|++... .+
T Consensus 648 F~EAAklFk~~G~enRAlEmyT-DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~K---Ai 723 (1081)
T KOG1538|consen 648 FHEAAKLFKRSGHENRALEMYT-DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVK---AI 723 (1081)
T ss_pred HHHHHHHHHHcCchhhHHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhh---hh
Confidence 7788888888777776766433 33345556555442111 11111111111122223335566666655332 22
Q ss_pred HHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhh
Q 000428 1156 RAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFI 1235 (1520)
Q Consensus 1156 ~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~ 1235 (1520)
..+-+.|=-+.|++. +|+.++ .+.|+ ++.++..+.....+--|-.+|.++
T Consensus 724 ~i~~d~gW~d~lidI---~rkld~------------------~ere~---------l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 724 EICGDHGWVDMLIDI---ARKLDK------------------AEREP---------LLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred hhhhcccHHHHHHHH---Hhhcch------------------hhhhH---------HHHHHHHHhhccccchHHHHHHHh
Confidence 222322222222221 222211 11111 222333333344455577889999
Q ss_pred cCHHHHHHHHHHhcCHHHHHHHHHHhC--ChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHH
Q 000428 1236 SNWAKLAVTLVKLKQFQGAVDAARKAN--SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNEL 1313 (1520)
Q Consensus 1236 ~N~~kLA~~lv~L~~y~~Ave~AkKa~--~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eL 1313 (1520)
++-.+++-.++.-++|++|..+|.+.. -++++..-..--.|...|..|| +.|-+.|+-.||
T Consensus 774 gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq-----------------kAfhkAGr~~EA 836 (1081)
T KOG1538|consen 774 GDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ-----------------KAFHKAGRQREA 836 (1081)
T ss_pred ccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH-----------------HHHHHhcchHHH
Confidence 999999999999999999999998854 2334433333444555566655 688999999999
Q ss_pred HHHHHhhcC
Q 000428 1314 ISLMESGLG 1322 (1520)
Q Consensus 1314 I~Lle~gl~ 1322 (1520)
++++|+-.+
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 999998754
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.39 E-value=0.065 Score=64.76 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=75.5
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHH
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA 1283 (1520)
+..-|+.++..|+|+.|..+|...- -|..+|.+|.++|+|++|+..+++|-.... ....|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------------~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP------------SLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------CCHHH
Confidence 4566899999999999999999764 466779999999999999999999632211 00111
Q ss_pred HhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHh
Q 000428 1284 QICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYA 1339 (1520)
Q Consensus 1284 ~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyA 1339 (1520)
.-.+...|...|.|++|+..|++++.+...|.....-++.+..
T Consensus 73 -------------~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 73 -------------YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred -------------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1133466788999999999999999888776544443444433
No 101
>PTZ00421 coronin; Provisional
Probab=95.34 E-value=2 Score=54.47 Aligned_cols=235 Identities=13% Similarity=0.235 Sum_probs=125.4
Q ss_pred cCeeEEEEecCCCCeEEEEEcCCCCCccccc--cC-----cccccccC-CcceeeeeccCCCCCCCcEEEEehhhhc---
Q 000428 35 SDKYICVRETAPQNSVVIIDMNQPMQPLRRP--IT-----ADSALMNP-NSRILALKAQLPGTTQDHLQIFNIELKA--- 103 (1520)
Q Consensus 35 Sdk~icvre~~~~~~v~Ivdl~~~~~~~r~p--i~-----AdsAimnP-~~~iiAlra~~~~~~g~~lQiFnle~k~--- 103 (1520)
|++||-+-=..++ .+.++.+.+.......| +. --+.-.+| ..++||-=+. .+++.|||+.+..
T Consensus 39 n~~~~a~~w~~~g-g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~-----DgtIkIWdi~~~~~~~ 112 (493)
T PTZ00421 39 NDRFIAVPWQQLG-STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE-----DGTIMGWGIPEEGLTQ 112 (493)
T ss_pred CCceEEEEEecCC-ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC-----CCEEEEEecCCCcccc
Confidence 5667655433323 34566665533211111 11 12334577 4566665433 5789999997642
Q ss_pred -------cccccccCCceeEEEeccC--CeEEEEe-cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEE
Q 000428 104 -------KIKSHQMSEQVVFWKWISP--KMLGVVT-QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVL 173 (1520)
Q Consensus 104 -------klks~~~~e~vvfWkWis~--~~l~lVT-~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l 173 (1520)
.+..| ...|..-.|-.. +.|+-.+ +..|..|+++.. .+...|.-|. ..|.+-..+++++.++.
T Consensus 113 ~~~~~l~~L~gH--~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~----~~V~sla~spdG~lLat 185 (493)
T PTZ00421 113 NISDPIVHLQGH--TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHS----DQITSLEWNLDGSLLCT 185 (493)
T ss_pred ccCcceEEecCC--CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCC----CceEEEEEECCCCEEEE
Confidence 12223 345777777532 3555444 467999999643 3444444332 23555556677776554
Q ss_pred EeccCCCCCCCccccceEEEeecccc-cccccchhhccce-eeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCC
Q 000428 174 IGIAPGSAERPQLVKGNMQLFSVDQQ-RSQALEAHAASFA-QFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQP 251 (1520)
Q Consensus 174 ~Gi~~~~~~~~~~i~G~mQLyS~er~-~sQ~ieghaa~F~-~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~ 251 (1520)
.| -.|.+.+|....+ .-.-+.||.+.-. .... .+....+++.+.- ... .+.+++-++...
T Consensus 186 gs-----------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w--~~~~~~ivt~G~s-~s~---Dr~VklWDlr~~- 247 (493)
T PTZ00421 186 TS-----------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW--AKRKDLIITLGCS-KSQ---QRQIMLWDTRKM- 247 (493)
T ss_pred ec-----------CCCEEEEEECCCCcEEEEEecCCCCcceEEEE--cCCCCeEEEEecC-CCC---CCeEEEEeCCCC-
Confidence 33 3788999998754 3344678865321 1111 1122234433321 111 156899888542
Q ss_pred CCCCcccccccccCCCCCCCCcceeE-EeccccceEEEEec-cceEEEEeccchhhhhhc
Q 000428 252 GKPSFTKKQADLFFPPDFADDFPVAM-QISHKYGLIYVITK-LGLLFVYDLETAAAVYRN 309 (1520)
Q Consensus 252 ~~~~f~kk~~d~~fpp~~~~DFPv~m-qvs~k~g~iyviTK-~G~l~lyDl~tg~~i~~~ 309 (1520)
..++.....+ ..-.+.+ ..+..-+++|+.+| .|.|++||+.+|.+++..
T Consensus 248 -~~p~~~~~~d--------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 248 -ASPYSTVDLD--------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred -CCceeEeccC--------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 1122111100 0112222 34556678888887 899999999999877654
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.33 E-value=1.5 Score=55.88 Aligned_cols=270 Identities=17% Similarity=0.147 Sum_probs=146.3
Q ss_pred HHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH--HHHHHHH--
Q 000428 1086 FKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL--DVIRAAE-- 1159 (1520)
Q Consensus 1086 YkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~--evi~~a~-- 1159 (1520)
+...|++++|+..|.++.. .-++...+.-..|+.++..|+.+||...|-+= .||+++. .-+..|.
T Consensus 14 l~e~g~~~~AL~~L~~~~~---------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK---------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh---------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3445666666666554431 12445556666788888899999999987553 6666654 3333333
Q ss_pred ----hcCChhHHHHHHHHHhhhcCCcchhHH--HHHHHHhhCChh-hHHHHhcC---cCcchHH-HHHhhhhccccHHHH
Q 000428 1160 ----DADVYHDLVRYLLMVRQKVKEPKVDSE--LIYAYAKIDRLG-DIEEFILM---PNVANLQ-NVGDRLYDDTLYEAA 1228 (1520)
Q Consensus 1160 ----~a~~~e~Li~yL~m~r~~~~ep~id~~--lv~~yAk~~~l~-ele~fl~~---~N~a~v~-~vgd~~~eeg~YeaA 1228 (1520)
..+..+.+..++.. ...+-|+.+.. +...+...+.+. .+.+||.. ..++.+. .+-..+-+....+..
T Consensus 85 ~~~~~~~~~~~~~~~y~~--l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDE--LAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hcccccccHHHHHHHHHH--HHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 23356777777774 23555766664 333333333332 23566443 3333331 132233222222222
Q ss_pred HHHHHhhc-------------------------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHH
Q 000428 1229 KIIYAFIS-------------------------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283 (1520)
Q Consensus 1229 k~~y~~~~-------------------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA 1283 (1520)
..++..+- -+.=||..|-++|+|++|.+...+|-.-. -+++ ++
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~-----el- 230 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLV-----EL- 230 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcH-----HH-
Confidence 22222210 12345888999999999999888754211 0112 11
Q ss_pred HhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccC--hhhhHHH---HHHHHHhhc
Q 000428 1284 QICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYR--YEKLMEH---IKLFSTRLN 1358 (1520)
Q Consensus 1284 ~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~--pekLmeh---lk~y~~~iN 1358 (1520)
.---.+.|...|.+++|...++.|-.|+.+.--|=+ -.|||- -++.-++ ++.|+..=.
T Consensus 231 -------------y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs----K~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 231 -------------YMTKARILKHAGDLKEAAEAMDEARELDLADRYINS----KCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred -------------HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH----HHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 223347788999999999999999888888644333 455552 2222222 333433321
Q ss_pred hH-HHHHHHHhhcchHHHHHHHHhhccHHHHH---HHHHhc
Q 000428 1359 IP-KLIRACDEQQHWKELTYLYIQYDEFDNAA---TTIMNH 1395 (1520)
Q Consensus 1359 i~-K~i~~ce~~~lW~E~vfLy~~~~e~d~A~---~~mi~h 1395 (1520)
-| .-+..-+-.|.-.|..-.|...|++..|+ ..+..|
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 11111112344466667788888888888 444445
No 103
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.29 E-value=5.5 Score=47.05 Aligned_cols=229 Identities=13% Similarity=0.210 Sum_probs=117.2
Q ss_pred CeEEEEEcCCCCC--c-ccccc--CcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccc---cccccCCceeEEEe
Q 000428 48 NSVVIIDMNQPMQ--P-LRRPI--TADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKI---KSHQMSEQVVFWKW 119 (1520)
Q Consensus 48 ~~v~Ivdl~~~~~--~-~r~pi--~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~kl---ks~~~~e~vvfWkW 119 (1520)
++|.++|+..... . .+-+. .+-.-..+|..+.+.+=.. ....+.+|+++.+.++ +.........+-.+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~----~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR----PEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC----CCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 4888888853221 1 12222 2334456899887766321 1467899999744333 33444434333333
Q ss_pred ccCCeEEEEe---cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeec
Q 000428 120 ISPKMLGVVT---QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSV 196 (1520)
Q Consensus 120 is~~~l~lVT---~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~ 196 (1520)
-.+....+|+ +..|.-|+++.+..+.+.....+...+ .-.=..+++++|+.+.... .|.+=+|.+
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~--~~~~~~~p~g~~l~v~~~~----------~~~v~v~d~ 155 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG--CHSANIDPDNRTLWVPCLK----------EDRIRLFTL 155 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc--ccEeEeCCCCCEEEEeeCC----------CCEEEEEEE
Confidence 3445555555 367778887532222111111111222 1122368999999887754 677888888
Q ss_pred ccccccccchhhccceeeecCCCCC-----CceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccc-cCCCCC-
Q 000428 197 DQQRSQALEAHAASFAQFKVPGNEN-----PSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADL-FFPPDF- 269 (1520)
Q Consensus 197 er~~sQ~ieghaa~F~~~~~~g~~~-----~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~-~fpp~~- 269 (1520)
+..- .+..+.....++.....|+ |..=+.|+.... + +++.+.+++...+ .+ +....+ .+|+..
T Consensus 156 ~~~g--~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~----~~v~v~~~~~~~~--~~-~~~~~~~~~p~~~~ 225 (330)
T PRK11028 156 SDDG--HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-N----SSVDVWQLKDPHG--EI-ECVQTLDMMPADFS 225 (330)
T ss_pred CCCC--cccccCCCceecCCCCCCceEEECCCCCEEEEEecC-C----CEEEEEEEeCCCC--CE-EEEEEEecCCCcCC
Confidence 6521 1211111111111100011 111122332221 2 5688888864322 12 111122 134432
Q ss_pred CCCcceeEEeccccceEEEEec-cceEEEEeccc
Q 000428 270 ADDFPVAMQISHKYGLIYVITK-LGLLFVYDLET 302 (1520)
Q Consensus 270 ~~DFPv~mqvs~k~g~iyviTK-~G~l~lyDl~t 302 (1520)
...+|..|.+++.-..+|+... .+.|.+||+.+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 2347888999998889999855 68999999965
No 104
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.27 E-value=0.17 Score=55.10 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=92.9
Q ss_pred CcHHHHHHHHhhcC-CCChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhcc---Ch---hhHHHHHHhcC-
Q 000428 425 PPLLQYFGTLLTRG-KLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTV---DN---DLALKIYIKAR- 496 (1520)
Q Consensus 425 ~pLL~Yf~~ll~~g-~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~~---D~---~LA~~iY~r~~- 496 (1520)
+-++.|...|.+.| +.+.....-|++.++..|+-..+.+.+.-.-+.+|+.+.-.+-.. +| .||+-.+.|-+
T Consensus 11 ~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 11 AVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 35788999998877 677788889999999999999999999999999999999777433 54 69999999977
Q ss_pred CCHHHHHHHHHhccHHHHHHHHHHhC--CchhHHHHHHHH
Q 000428 497 ATPKVVAAFAERREFDKILIYSKQVG--YTPDYLFLLQTI 534 (1520)
Q Consensus 497 ~~~KvI~~~~e~g~f~~~~~Y~~~~~--~~~d~~~lL~~~ 534 (1520)
.|++++.+|...|++-.+++|+.+.+ .+..-..+|...
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAA 130 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHH
Confidence 99999999999999999999999853 244455555554
No 105
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.26 E-value=0.2 Score=62.79 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=136.9
Q ss_pred hhccccHHHHHHHH---HhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccc
Q 000428 1219 LYDDTLYEAAKIIY---AFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVD 1295 (1520)
Q Consensus 1219 ~~eeg~YeaAk~~y---~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d 1295 (1520)
+++-|+|++|-..= -..++|--||.--..-=+++-|.+++.|..+.+..+-+- |.+..+..| -.|+
T Consensus 566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~-------EL~~~k~rg----e~P~ 634 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELIS-------ELEERKKRG----ETPN 634 (1081)
T ss_pred hhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHH-------HHHHHHhcC----CCch
Confidence 56778887774211 134588888887777778888888888888776554332 222222222 1121
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHH---HHHhhchHHHHHHHHhhcch
Q 000428 1296 DLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKL---FSTRLNIPKLIRACDEQQHW 1372 (1520)
Q Consensus 1296 ~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~---y~~~iNi~K~i~~ce~~~lW 1372 (1520)
++ =+.+-+...|+|.||-.+|++.+--+|| |.|||.|.. .+-..|+++. =.+++=+.|=...+.+....
T Consensus 635 ~i-LlA~~~Ay~gKF~EAAklFk~~G~enRA-lEmyTDlRM------FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 635 DL-LLADVFAYQGKFHEAAKLFKRSGHENRA-LEMYTDLRM------FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred HH-HHHHHHHhhhhHHHHHHHHHHcCchhhH-HHHHHHHHH------HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 11 1223445589999999999999888899 999998876 2222222222 14555566666777788888
Q ss_pred HHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHH--HHHHHHHHHhh-CcchHHHHHHHHhhcCCHHHH
Q 000428 1373 KELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVEL--YYKAVHFYLQE-HPDLINDLLNVLALRVDHTRV 1449 (1520)
Q Consensus 1373 ~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~el--yYkai~FyL~~-~P~~l~dlL~~l~~rlD~~rv 1449 (1520)
+-+.-+++..||.++|++++++| .| -+.--||-.|++.+|. .-+...|.... -|-+..+..+.+ .|...+
T Consensus 707 kaAAEmLiSaGe~~KAi~i~~d~---gW-~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~---gD~ksi 779 (1081)
T KOG1538|consen 707 KAAAEMLISAGEHVKAIEICGDH---GW-VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM---GDLKSL 779 (1081)
T ss_pred HHHHHHhhcccchhhhhhhhhcc---cH-HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh---ccHHHH
Confidence 88899999999999999999999 34 3445566666644442 33444444433 345555554433 566666
Q ss_pred HHHHHhcCCcc
Q 000428 1450 VDIMRKAGHLL 1460 (1520)
Q Consensus 1450 V~~~~k~~~ip 1460 (1520)
|.+--..++||
T Consensus 780 VqlHve~~~W~ 790 (1081)
T KOG1538|consen 780 VQLHVETQRWD 790 (1081)
T ss_pred hhheeecccch
Confidence 66655555544
No 106
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.15 E-value=3.7 Score=52.61 Aligned_cols=276 Identities=18% Similarity=0.098 Sum_probs=162.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHH-----------------HHHhC-ChhHHHHHHHH
Q 000428 1067 PAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEF-----------------AFRVE-EDAVWSQVAKA 1128 (1520)
Q Consensus 1067 ~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~-----------------Aek~~-~~eVw~~lgka 1128 (1520)
.+.|..|+..+-++-|..+|.+ |+.+--.....|.||..+ .+.|. -+-+|--++|.
T Consensus 520 ~~da~~~~k~~~~~carAVya~------alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 520 LDDAQSCEKRPAIECARAVYAH------ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hhhHHHHHhcchHHHHHHHHHH------HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 3568899999999999999988 444433222223333222 22233 44567777888
Q ss_pred HHhhccHHHHHHHHHhc----CC-cchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHH
Q 000428 1129 QLREGLVSDAIESFIRA----DD-ATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEF 1203 (1520)
Q Consensus 1129 ~l~~~~v~eAI~~Yika----~d-~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~f 1203 (1520)
+-..|++..|..-.-.+ .+ -+-.-.-+..-.+.+++|..-++|..||.++-++++=.--+..-.-+|+..+...+
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 87778898887664433 22 12223666777789999999999999999888888744322222223444444333
Q ss_pred ----hcC--cCcchHHHHHhhhhccccHHHHHHHHHh--------hcCHHHHHHHHHHhcCHHHHHHHHHHhC--C---h
Q 000428 1204 ----ILM--PNVANLQNVGDRLYDDTLYEAAKIIYAF--------ISNWAKLAVTLVKLKQFQGAVDAARKAN--S---A 1264 (1520)
Q Consensus 1204 ----l~~--~N~a~v~~vgd~~~eeg~YeaAk~~y~~--------~~N~~kLA~~lv~L~~y~~Ave~AkKa~--~---~ 1264 (1520)
|.. ....=+-..|+.+...++.|.||.-|.+ +.-|..||.+=.+-|..-+|...--++. | .
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 333 2233336689999999999999999974 5578888888888888888876655543 3 3
Q ss_pred hhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcC-CHHHHHHHHHhhcCccccccchhHHHHHHHhccCh
Q 000428 1265 KTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRG-YFNELISLMESGLGLERAHMGIFTELGVLYARYRY 1343 (1520)
Q Consensus 1265 k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G-~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~p 1343 (1520)
..|=+.+..=+..|..+.|.. .+..-+.-+.+.| .|.|+|-+..++- |.. .|+ =|.--+..+|
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~----------lmakALQecp~sg~LWaEaI~le~~~~---rkT--ks~-DALkkce~dp 817 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAEL----------LMAKALQECPSSGLLWAEAIWLEPRPQ---RKT--KSI-DALKKCEHDP 817 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHH----------HHHHHHHhCCccchhHHHHHHhccCcc---cch--HHH-HHHHhccCCc
Confidence 356443332222222222211 0111122223334 4555555555442 121 122 1344466677
Q ss_pred hhhHHHHHHHHHhhchHHHHH
Q 000428 1344 EKLMEHIKLFSTRLNIPKLIR 1364 (1520)
Q Consensus 1344 ekLmehlk~y~~~iNi~K~i~ 1364 (1520)
+-|....++||+.=-+.|...
T Consensus 818 hVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777665555543
No 107
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.33 Score=57.39 Aligned_cols=180 Identities=16% Similarity=0.201 Sum_probs=114.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCCh----HHHHHHHHHcCCH
Q 000428 1004 AAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDG----PAVGEVAVEAQLY 1079 (1520)
Q Consensus 1004 ~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~----~~IA~ia~e~~L~ 1079 (1520)
.+-+-||.+|+-.---.+...++-+ ++|.+ ++||-|+.+|-..-|.+|--|--.+|-..++ .+||..+=
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de-~efa~-~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC----- 184 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDE-GEFAE-GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC----- 184 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcc-hhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH-----
Confidence 3446789999874444444444433 68988 7999999999777788887776665654433 33454432
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHHHH
Q 000428 1080 EEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVIRA 1157 (1520)
Q Consensus 1080 EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi~~ 1157 (1520)
|-..-+.-.+..+.|+..+ .+|++-..+|--..+ .+|+..+..|+.+.||+.+... .||+...+|+..
T Consensus 185 -ELAq~~~~~~~~d~A~~~l-------~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 185 -ELAQQALASSDVDRARELL-------KKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -HHHHHHhhhhhHHHHHHHH-------HHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3333334345555555543 347776667666666 7899999999999999998765 777766666654
Q ss_pred HHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcC-----cCcchHHHHHhhhhccccHHHHH
Q 000428 1158 AEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILM-----PNVANLQNVGDRLYDDTLYEAAK 1229 (1520)
Q Consensus 1158 a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~-----~N~a~v~~vgd~~~eeg~YeaAk 1229 (1520)
.+ -||+..|+.++...||.. ++.+....+.+.-.+.+=-++|.
T Consensus 255 L~-----------------------------~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 255 LY-----------------------------ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred HH-----------------------------HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHH
Confidence 44 347777777777777654 33333344555555444344443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.04 E-value=0.22 Score=52.43 Aligned_cols=87 Identities=17% Similarity=0.042 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCCh
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRL 1197 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l 1197 (1520)
+|+.|+.+|.++...|++++|+.+|-++- ..+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al-------------------------------~~~----------------- 54 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLV-------------------------------MAQ----------------- 54 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------HcC-----------------
Confidence 46568888888888889999988887730 011
Q ss_pred hhHHHHhcCcCcch-HHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1198 GDIEEFILMPNVAN-LQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1198 ~ele~fl~~~N~a~-v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
+...+ ....|..|...|+|+.|...|...- -+..+|.||..+|++++|+++++++
T Consensus 55 ---------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 55 ---------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred ---------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 2445666666777777777777554 4677888999999999999888886
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.04 E-value=5.2 Score=47.30 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=97.6
Q ss_pred HhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHH------HHHHhcCChhHHHHHHHHHhhhcCCcc---h
Q 000428 1115 RVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVI------RAAEDADVYHDLVRYLLMVRQKVKEPK---V 1183 (1520)
Q Consensus 1115 k~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi------~~a~~a~~~e~Li~yL~m~r~~~~ep~---i 1183 (1520)
..+..+..+..|......|+.++|+..+.++ .+|++..... ......+......+.+.. .....|. .
T Consensus 39 ~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 116 (355)
T cd05804 39 RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYL 116 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHH
Confidence 3445667777777777888999999988775 5666653221 111223444444444432 1122222 2
Q ss_pred hHHHHHHHHhhCChhhHHHHhcC-----cCcchH-HHHHhhhhccccHHHHHHHHHhhc------------CHHHHHHHH
Q 000428 1184 DSELIYAYAKIDRLGDIEEFILM-----PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS------------NWAKLAVTL 1245 (1520)
Q Consensus 1184 d~~lv~~yAk~~~l~ele~fl~~-----~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~------------N~~kLA~~l 1245 (1520)
-..+..++...|++++.+..... ++.+.. ..+|..+++.|++++|...+...- +|..+|.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 22356678889999888655332 444444 779999999999999999988633 345689999
Q ss_pred HHhcCHHHHHHHHHHhC
Q 000428 1246 VKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1246 v~L~~y~~Ave~AkKa~ 1262 (1520)
...|++++|.+..+++.
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999974
No 110
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=7.6 Score=48.57 Aligned_cols=320 Identities=16% Similarity=0.184 Sum_probs=181.3
Q ss_pred HHHHHhhccHHHHHHHHHhc----CC-cchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHH---HHHHHhhCCh
Q 000428 1126 AKAQLREGLVSDAIESFIRA----DD-ATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSEL---IYAYAKIDRL 1197 (1520)
Q Consensus 1126 gka~l~~~~v~eAI~~Yika----~d-~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~l---v~~yAk~~~l 1197 (1520)
|..+-..+.+.+||.||-+| .| |-.|++...|....|+|+..++.-..| ...+|.---.| ..++-++|++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkA--LEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKA--LELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHH--hhcCcHHHHHHHHHHHHHHhhccH
Confidence 55555678899999999887 33 778888888888888888888776632 23344332232 2234445555
Q ss_pred hhH-HH----Hhc-CcCcchHHHHHhhhhccccHHHHHHHHHh--hc---------CH--------------------HH
Q 000428 1198 GDI-EE----FIL-MPNVANLQNVGDRLYDDTLYEAAKIIYAF--IS---------NW--------------------AK 1240 (1520)
Q Consensus 1198 ~el-e~----fl~-~~N~a~v~~vgd~~~eeg~YeaAk~~y~~--~~---------N~--------------------~k 1240 (1520)
.+. .+ .|. +=+++.+....||.....=.+.|+.-|.. .. -| +-
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 544 21 122 34556667777777776666667666661 11 11 11
Q ss_pred H----HHHHHH-hcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHH
Q 000428 1241 L----AVTLVK-LKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELIS 1315 (1520)
Q Consensus 1241 L----A~~lv~-L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~ 1315 (1520)
+ -..+.. ...|+.|.+.+.++..... ...|+..-+-++-. -++-|.=...++-=.|..-.+-.
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~----~~~~~n~~d~~le~--------~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSE----SSLSVNEIDAELEY--------MAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhh----hhccccccchhHHH--------HHHHHHHhhhhhhhcCCchhhhh
Confidence 1 223333 3378888888887443211 11222111111100 00112222334445677778888
Q ss_pred HHHhhcCccccccchhHHHHHHHhccC-hhhhHHHHHHHHHhhchHHHHHHHHh---hcchHHHHHHHHhhc----cHHH
Q 000428 1316 LMESGLGLERAHMGIFTELGVLYARYR-YEKLMEHIKLFSTRLNIPKLIRACDE---QQHWKELTYLYIQYD----EFDN 1387 (1520)
Q Consensus 1316 Lle~gl~lerAh~~~fTeLailyAky~-pekLmehlk~y~~~iNi~K~i~~ce~---~~lW~E~vfLy~~~~----e~d~ 1387 (1520)
.+.+++.|.++....|.-+|-+|+.-+ ++++ .+-|.....+. +++ +|+-..+-||+-+++ +|++
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~---~~~F~~A~~ld-----p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKM---WKDFNKAEDLD-----PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHHHhhhhccHHH---HHHHHHHHhcC-----CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887888888888653 4444 33455555444 454 555566666665543 3444
Q ss_pred HHHHHHhcCchhh----------cchhhHHHHHhhhhhHHHHHHHHHHHhh---CcchHHHHHHHHhhcCCHHHHHHHHH
Q 000428 1388 AATTIMNHSPEAW----------DHMQFKDVAVKVANVELYYKAVHFYLQE---HPDLINDLLNVLALRVDHTRVVDIMR 1454 (1520)
Q Consensus 1388 A~~~mi~h~~~a~----------~h~~fk~ii~kvan~elyYkai~FyL~~---~P~~l~dlL~~l~~rlD~~rvV~~~~ 1454 (1520)
|+.+= |..++ ....|-+.+.-..+ +++- -|+--+-.-..|+.+-|.++.+++..
T Consensus 420 ai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee----------~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 420 AISLD---PENAYAYIQLCCALYRQHKIAESMKTFEE----------AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 44221 22222 11112111111111 1222 33555556677888888888888877
Q ss_pred hc------------CCccchHHHHHHHhhcChHHHHHHHH
Q 000428 1455 KA------------GHLLLVKPYMVAVQSNNVSAVNEALN 1482 (1520)
Q Consensus 1455 k~------------~~ipLik~yL~~vq~~n~~~Vneal~ 1482 (1520)
++ +--|||..-|.-.||. ..+|.|+|
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk--~d~~~a~~ 524 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWK--EDINQAEN 524 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchh--hhHHHHHH
Confidence 65 3368888899999998 88888876
No 111
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=94.84 E-value=0.099 Score=53.04 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=58.0
Q ss_pred hhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcC
Q 000428 1183 VDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQ 1250 (1520)
Q Consensus 1183 id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~ 1250 (1520)
|||.|..+|..+ +-+.+.+|+..+|..+++.+-..+.+.|.|.+...+|.+-+.+.+.-.++.++++
T Consensus 1 VDTaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 1 VDTALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CcHHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 799999999999 8899999999999999999999999999999988888877776666666665554
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.63 E-value=0.17 Score=51.38 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=67.3
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhC--ChhhHHHHHHHHhcchhhh
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKAN--SAKTWKEVCFACVDAEEFR 1281 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~--~~k~wk~v~~acv~~~e~r 1281 (1520)
....|..++..|+|+.|...|+..- -|..+|.+|.+.|++++|++..+++- +++.+
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-------------- 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP-------------- 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--------------
Confidence 4678888999999999998887652 46678999999999999999887753 22111
Q ss_pred HHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1282 LAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1282 LA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
+..-.+...|...|++++++..+++++.+...
T Consensus 86 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 86 -------------RPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 11224457788999999999999999877765
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.62 E-value=0.54 Score=49.24 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=64.2
Q ss_pred HHHHhhhhccccHHHHHHHHHhhcC-----------HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhh
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFISN-----------WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFR 1281 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~N-----------~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~r 1281 (1520)
..+|+.+++.|+|+.|+..|..+.+ ..+||.++...|+|++|++...+. .+..|+..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~----------- 119 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKAL----------- 119 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHH-----------
Confidence 4588899999999999999986652 234699999999999999999663 34456221
Q ss_pred HHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1282 LAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1282 LA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
+ .+-..+.|...|++++|+..|++++
T Consensus 120 -~-------------~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 120 -A-------------AELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -H-------------HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1 1234588999999999999999874
No 114
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.59 E-value=0.31 Score=58.86 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHH
Q 000428 1237 NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISL 1316 (1520)
Q Consensus 1237 N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~L 1316 (1520)
-|..|+.||--||+|++||..-+. . .++|++.|=. ...----.-|.++|.=.|.|+.|+..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~---R---------------L~ia~efGDr-AaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKL---R---------------LEIAQEFGDR-AAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHH---H---------------HHHHHHhhhH-HHHHHhhcccchhhhhhcccHhHHHH
Confidence 566678899999999999987665 1 3334433300 00000023566888889999999999
Q ss_pred HHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhch-HHHHHHHH--------hhcchHHHHHHHHhhccHHH
Q 000428 1317 MESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNI-PKLIRACD--------EQQHWKELTYLYIQYDEFDN 1387 (1520)
Q Consensus 1317 le~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi-~K~i~~ce--------~~~lW~E~vfLy~~~~e~d~ 1387 (1520)
|++.+.|.+. .|-=| .-+-+-|...+-+--++.|.+.|.- .+=+.+++ -+.-|. +--.|...|+.++
T Consensus 258 YK~tl~LAie-lg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS-Lgna~~alg~h~k 333 (639)
T KOG1130|consen 258 YKLTLNLAIE-LGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS-LGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHH-hcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhhhhHHH
Confidence 9998766544 22222 1222334455555555666555521 11222222 122343 3345566677888
Q ss_pred HHHHHHhc
Q 000428 1388 AATTIMNH 1395 (1520)
Q Consensus 1388 A~~~mi~h 1395 (1520)
|+.-...|
T Consensus 334 Al~fae~h 341 (639)
T KOG1130|consen 334 ALYFAELH 341 (639)
T ss_pred HHHHHHHH
Confidence 77666666
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.50 E-value=0.51 Score=61.96 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=88.3
Q ss_pred HHHHHHHHHH-hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcc
Q 000428 1106 IERAVEFAFR-VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPK 1182 (1520)
Q Consensus 1106 ~~~A~e~Aek-~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~ 1182 (1520)
+.++.+|+.+ .++++.+..||.+-...|+.+||...+..+ -+|++-...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~-------------------------- 125 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFIL-------------------------- 125 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHH--------------------------
Confidence 5668888886 456999999999999999999999999875 33333222111
Q ss_pred hhHHHHHHHHhhCChhhHH----HHhc-CcCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHh
Q 000428 1183 VDSELIYAYAKIDRLGDIE----EFIL-MPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKL 1248 (1520)
Q Consensus 1183 id~~lv~~yAk~~~l~ele----~fl~-~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L 1248 (1520)
++.++.+.+++++.. ..+. +++++.. ...|..+.+.|.|+.|..+|...- -+..+|.+|.+.
T Consensus 126 ----~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 126 ----MLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred ----HHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 122344444444442 2233 3666665 568888888888888888888665 245568888888
Q ss_pred cCHHHHHHHHHHh
Q 000428 1249 KQFQGAVDAARKA 1261 (1520)
Q Consensus 1249 ~~y~~Ave~AkKa 1261 (1520)
|+.++|+.+.++|
T Consensus 202 G~~~~A~~~~~~a 214 (694)
T PRK15179 202 GALWRARDVLQAG 214 (694)
T ss_pred CCHHHHHHHHHHH
Confidence 8888888888887
No 116
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.49 E-value=1.8 Score=57.80 Aligned_cols=220 Identities=12% Similarity=0.150 Sum_probs=123.3
Q ss_pred CeEEEEEcCCCCCcccccc---CcccccccCC-cceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccC-
Q 000428 48 NSVVIIDMNQPMQPLRRPI---TADSALMNPN-SRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISP- 122 (1520)
Q Consensus 48 ~~v~Ivdl~~~~~~~r~pi---~AdsAimnP~-~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~- 122 (1520)
+.|.+-|+.....+..-.- ..-+.-.||. ..++|-=+. ..++.|||+.+...++.......|....|.++
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----DGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 3777778765432211110 1123446663 456665433 57899999999888888777778888888754
Q ss_pred -CeEEEEe-cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccccc
Q 000428 123 -KMLGVVT-QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQR 200 (1520)
Q Consensus 123 -~~l~lVT-~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~ 200 (1520)
..|+..+ +..|+.|++.....|...+..|.. .|..-.. .+..+++ +|- -.|.+.+|.+..+.
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~----~V~~v~f-~~~~~lv-s~s----------~D~~ikiWd~~~~~ 693 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK----TVSYVRF-VDSSTLV-SSS----------TDNTLKLWDLSMSI 693 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCC----CEEEEEE-eCCCEEE-EEE----------CCCEEEEEeCCCCc
Confidence 4455444 347999999755556666655532 1222222 2445533 331 37889999886432
Q ss_pred -------ccccchhhcc--ceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCccccccc-c-cCCCCC
Q 000428 201 -------SQALEAHAAS--FAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQAD-L-FFPPDF 269 (1520)
Q Consensus 201 -------sQ~ieghaa~--F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d-~-~fpp~~ 269 (1520)
-..++||... +..+..+ .++++.+.. . +.++|-+...+...-.|.-...+ + ....+.
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~-----~~~lasgs~--D-----~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVS-----DGYIATGSE--T-----NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCC-----CCEEEEEeC--C-----CEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 2356777542 2222222 234444432 2 56888776443111011111111 0 001112
Q ss_pred CCCcceeEEeccccceEEEEeccceEEEEec
Q 000428 270 ADDFPVAMQISHKYGLIYVITKLGLLFVYDL 300 (1520)
Q Consensus 270 ~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl 300 (1520)
..+|=.++.++..-..+...+..|-|.+||+
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 2345556778887778888889999999997
No 117
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.2 Score=62.80 Aligned_cols=90 Identities=28% Similarity=0.303 Sum_probs=68.8
Q ss_pred HHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhcccccc
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIV 1292 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~ 1292 (1520)
..++.-+...|++|.|..+=..-+.-..| ..++|+++.|.++|.++++..-|++..++...++++.||++|-.+
T Consensus 618 t~va~Fle~~g~~e~AL~~s~D~d~rFel---al~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~--- 691 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELSTDPDQRFEL---ALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLR--- 691 (794)
T ss_pred hhHHhHhhhccchHhhhhcCCChhhhhhh---hhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHh---
Confidence 44666677799999998776655555444 468899999999999999999999999999999999999999754
Q ss_pred ccccHHHHHHHHHhcCC
Q 000428 1293 QVDDLEEVSEYYQNRGY 1309 (1520)
Q Consensus 1293 ~~d~l~elv~~Ye~~G~ 1309 (1520)
+-.+.+|+-.|...|+
T Consensus 692 -a~d~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 692 -ARDLGSLLLLYTSSGN 707 (794)
T ss_pred -hcchhhhhhhhhhcCC
Confidence 3333444444444443
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.39 E-value=0.38 Score=50.69 Aligned_cols=85 Identities=11% Similarity=-0.099 Sum_probs=57.5
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc----
Q 000428 1070 GEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA---- 1145 (1520)
Q Consensus 1070 A~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika---- 1145 (1520)
|..+.+.|.+++|...|++ +... .-.+++.|+.+|.++...|++++|+.+|-++
T Consensus 31 g~~~~~~g~~~~A~~~~~~--------------------al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSW--------------------LVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHcCCHHHHHHHHHH--------------------HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5566667777777766666 2222 2347788888888888888888888888776
Q ss_pred -CCcchHHHHHHHHHhcCChhHHHHHHHHHhh
Q 000428 1146 -DDATQFLDVIRAAEDADVYHDLVRYLLMVRQ 1176 (1520)
Q Consensus 1146 -~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~ 1176 (1520)
++++.+...-.+....|++++-+..+..|..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555666666666777777777765443
No 119
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.19 E-value=7.2 Score=47.60 Aligned_cols=258 Identities=13% Similarity=0.182 Sum_probs=140.4
Q ss_pred eecC-eeEEEEecC------C--CCeEEEEEcCCCCCccccccCcc----------cccccCCcceeeeeccCCCCCCCc
Q 000428 33 MESD-KYICVRETA------P--QNSVVIIDMNQPMQPLRRPITAD----------SALMNPNSRILALKAQLPGTTQDH 93 (1520)
Q Consensus 33 ~eSd-k~icvre~~------~--~~~v~Ivdl~~~~~~~r~pi~Ad----------sAimnP~~~iiAlra~~~~~~g~~ 93 (1520)
+..| |++-|.++- | ++.|.++|+....-+-+-|+..+ ....+|..+.+-+= + -+....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-n--~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-Q--FSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-c--CCCCCE
Confidence 4444 566666651 1 23999999999888878888777 56677776665553 2 122467
Q ss_pred EEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCC----CCccchhhc--ccCCCCCeEEEeeeCCC
Q 000428 94 LQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGD----SEPVKMFDR--TANLTNNQIINYKCDPT 167 (1520)
Q Consensus 94 lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~----~~P~k~f~R--~~~L~~~qIi~Y~~~~~ 167 (1520)
+-|.|+++++-++....+....-+-+=..+...++-+.+...-.++.+ ....++|+= .+-..+- +-+..|
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~d 205 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKS 205 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCC
Confidence 888889999999988886643333343444445555555444444221 123333331 0000111 114446
Q ss_pred CCeEEEEeccCCCCCCCccccceEEEeecccccccccch-hhcccee----eecCC------CCCCceEEEEEEecCCCC
Q 000428 168 EKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEA-HAASFAQ----FKVPG------NENPSVLISFATKSFNAG 236 (1520)
Q Consensus 168 ~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieg-haa~F~~----~~~~g------~~~~~~l~~fa~r~~~~~ 236 (1520)
++|+.+.- .|.+..--+........+- ..-+|+. ++..| ++....+|+.+.....|.
T Consensus 206 g~~~~vs~------------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 206 GRLVWPTY------------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred CcEEEEec------------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 66665432 1555544422111111110 0011111 12222 123344555443211000
Q ss_pred cc--cceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccc-eEEEEe-ccceEEEEeccchhhhhhc-cc
Q 000428 237 QV--TSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYG-LIYVIT-KLGLLFVYDLETAAAVYRN-RI 311 (1520)
Q Consensus 237 ~~--~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g-~iyviT-K~G~l~lyDl~tg~~i~~~-rI 311 (1520)
|. ..++.+++..+. |+...+. ...-|-+|.+|+-.. .+|+.. ..|-|+++|..|++.+-+- .+
T Consensus 274 hk~~~~~V~ViD~~t~-------kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v 341 (352)
T TIGR02658 274 HKTASRFLFVVDAKTG-------KRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQL 341 (352)
T ss_pred ccCCCCEEEEEECCCC-------eEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence 00 034666664321 2223333 346788999999999 888888 5788999999999999887 77
Q ss_pred CCCceEEeec
Q 000428 312 SPDPIFLTSE 321 (1520)
Q Consensus 312 s~~~iF~~~~ 321 (1520)
-..|.|+.++
T Consensus 342 g~~P~~~~~~ 351 (352)
T TIGR02658 342 GRGPQVITTA 351 (352)
T ss_pred CCCCeEEecC
Confidence 7778777664
No 120
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.11 E-value=1.3 Score=50.69 Aligned_cols=146 Identities=23% Similarity=0.359 Sum_probs=95.6
Q ss_pred cCCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccccc
Q 000428 121 SPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQR 200 (1520)
Q Consensus 121 s~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~ 200 (1520)
..+.|.+-|++-+|.+++.+...|.++....+ |..-.+-++.+.+++. + .|.+-.|+.+.=.
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~------I~ql~vl~~~~~llvL--s----------d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRILKLSS------ITQLSVLPELNLLLVL--S----------DGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEeecce------EEEEEEecccCEEEEE--c----------CCccEEEEchhhc
Confidence 36788888999999999966778888877765 6666666666665554 3 2444444422211
Q ss_pred c-----------------cc-cchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCccccccc
Q 000428 201 S-----------------QA-LEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQAD 262 (1520)
Q Consensus 201 s-----------------Q~-ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d 262 (1520)
+ +. .-.++-.|+ ..+.......+|.+.| .+++|.|...+.+ .|.+...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~k--------k~i~i~~~~~~~~--~f~~~~ke 134 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVK--------KKILIYEWNDPRN--SFSKLLKE 134 (275)
T ss_pred cccccccccccccccccccccccCCeeEEe---eccccccceEEEEEEC--------CEEEEEEEECCcc--cccceeEE
Confidence 1 11 223444554 3344455566777776 3699999966422 24245556
Q ss_pred ccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhh
Q 000428 263 LFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAA 305 (1520)
Q Consensus 263 ~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~ 305 (1520)
+.+| |-|.+|.+. .+.|.+.|+.|| .++|+.||..
T Consensus 135 ~~lp-----~~~~~i~~~--~~~i~v~~~~~f-~~idl~~~~~ 169 (275)
T PF00780_consen 135 ISLP-----DPPSSIAFL--GNKICVGTSKGF-YLIDLNTGSP 169 (275)
T ss_pred EEcC-----CCcEEEEEe--CCEEEEEeCCce-EEEecCCCCc
Confidence 7777 889999999 788888889885 5778887644
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.03 E-value=0.18 Score=47.79 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=44.7
Q ss_pred cccHHHHHHHHHhhc-----C-----HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccc
Q 000428 1222 DTLYEAAKIIYAFIS-----N-----WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNII 1291 (1520)
Q Consensus 1222 eg~YeaAk~~y~~~~-----N-----~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li 1291 (1520)
.|+|+.|..+|..+- | +..+|.||.+.|+|.+|+++.++.. +..-. .+...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~----~~~~~--------~~~~~------- 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK----LDPSN--------PDIHY------- 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT----HHHCH--------HHHHH-------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC----CCCCC--------HHHHH-------
Confidence 466666666665332 2 4456888999999999998887711 11101 11111
Q ss_pred cccccHHHHHHHHHhcCCHHHHHHHHHhh
Q 000428 1292 VQVDDLEEVSEYYQNRGYFNELISLMESG 1320 (1520)
Q Consensus 1292 ~~~d~l~elv~~Ye~~G~f~eLI~Lle~g 1320 (1520)
-+..+|.+.|+|+|++..|+++
T Consensus 63 -------l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 -------LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -------HHHHHHHHTT-HHHHHHHHHHH
T ss_pred -------HHHHHHHHhCCHHHHHHHHhcC
Confidence 2347788889999999888764
No 122
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=0.32 Score=61.08 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhc-CCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1067 PAVGEVAVEAQLYEEAFAIFKKF-NLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1067 ~~IA~ia~e~~L~EEA~~LYkK~-~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
.++|...+..|+.|.|..+--.. .+++-|+.+ +.++-|.+.|.+.+.+.-|.+||.+-+..+.+.-|-++|.+|
T Consensus 618 t~va~Fle~~g~~e~AL~~s~D~d~rFelal~l-----grl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELSTDPDQRFELALKL-----GRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhHHhHhhhccchHhhhhcCCChhhhhhhhhhc-----CcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 45566677899999998886532 234444432 568889999999999999999999999999999999999997
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcch-HHHHHhhhhcccc
Q 000428 1146 DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVAN-LQNVGDRLYDDTL 1224 (1520)
Q Consensus 1146 ~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~-v~~vgd~~~eeg~ 1224 (1520)
.|-+. |+..|. ..++++ +..+|..|-++|.
T Consensus 693 ~d~~~------------------------------------LlLl~t-------------~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 693 RDLGS------------------------------------LLLLYT-------------SSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred cchhh------------------------------------hhhhhh-------------hcCChhHHHHHHHHHHhhcc
Confidence 76221 111111 123333 5667777777888
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1225 YEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1225 YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
..-|..+|=..+.+..-+..|+.-+++.+|.=.||.-
T Consensus 724 ~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtY 760 (794)
T KOG0276|consen 724 NNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTY 760 (794)
T ss_pred cchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhh
Confidence 8888877777777777777777777777777777653
No 123
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=4.9 Score=49.22 Aligned_cols=239 Identities=17% Similarity=0.127 Sum_probs=133.6
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHH---HHHHHHh
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSE---LIYAYAK 1193 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~---lv~~yAk 1193 (1520)
++..+.--+|+.+-..|+..+||.-|.++. ..||+.=+. .++.+++
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-------------------------------~~dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTL-------------------------------CANPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHh-------------------------------hCChhhhhhHHHHHHHHHh
Confidence 345555666777766777777777776641 223333221 3334455
Q ss_pred hCChhhHHHH---hc---CcCcchHHHHHhhhhccccHHHHHHHHHhh----cCHHH----HHHHHHHhcCHHHHHHHHH
Q 000428 1194 IDRLGDIEEF---IL---MPNVANLQNVGDRLYDDTLYEAAKIIYAFI----SNWAK----LAVTLVKLKQFQGAVDAAR 1259 (1520)
Q Consensus 1194 ~~~l~ele~f---l~---~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~----~N~~k----LA~~lv~L~~y~~Ave~Ak 1259 (1520)
-|++.+++.. |- ....+.+.--|..++++.+|+.|.-+-.+. +|... =+..+..+|+.++|+=++|
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 5555554433 21 133444555677777888888776554432 22222 1888999999999999999
Q ss_pred HhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHh
Q 000428 1260 KANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYA 1339 (1520)
Q Consensus 1260 Ka~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyA 1339 (1520)
.|.+-..+ || +..++|+++|-..|.+.||..+=.-+.+.=.+.-.--|-+|-...
T Consensus 359 ~Aq~Lap~-------------rL------------~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 359 TAQMLAPY-------------RL------------EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhcchh-------------hH------------HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceee
Confidence 87776555 44 347899999999999999987654443221111111232333344
Q ss_pred ccChhhhHHHHHHHH-Hhh-----chHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhc---CchhhcchhhHHHHH
Q 000428 1340 RYRYEKLMEHIKLFS-TRL-----NIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNH---SPEAWDHMQFKDVAV 1410 (1520)
Q Consensus 1340 ky~pekLmehlk~y~-~~i-----Ni~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h---~~~a~~h~~fk~ii~ 1410 (1520)
-++|.- -|-.|.|- +.+ -++.|...+ -|+..-|.+..++..+.+| -+|.-=|...-+++.
T Consensus 414 ~~dp~~-rEKAKkf~ek~L~~~P~Y~~AV~~~A----------EL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 414 FPDPRM-REKAKKFAEKSLKINPIYTPAVNLIA----------ELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMR 482 (564)
T ss_pred ccCchh-HHHHHHHHHhhhccCCccHHHHHHHH----------HHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 455543 45555543 222 334333332 2555567777777777766 234444444444444
Q ss_pred hhhhhHHHHHHHHHH
Q 000428 1411 KVANVELYYKAVHFY 1425 (1520)
Q Consensus 1411 kvan~elyYkai~Fy 1425 (1520)
-+.- +=+|+++|
T Consensus 483 A~Ne---~Q~am~~y 494 (564)
T KOG1174|consen 483 AQNE---PQKAMEYY 494 (564)
T ss_pred Hhhh---HHHHHHHH
Confidence 3332 23455444
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.87 E-value=1.9 Score=57.84 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=100.3
Q ss_pred cCcchHHHHHhhhhccccHHHHHHHHHhh--------cCHHHHHHHHHHhcCHHHHHHH--HHHhCChhhHHHHHHHH--
Q 000428 1207 PNVANLQNVGDRLYDDTLYEAAKIIYAFI--------SNWAKLAVTLVKLKQFQGAVDA--ARKANSAKTWKEVCFAC-- 1274 (1520)
Q Consensus 1207 ~N~a~v~~vgd~~~eeg~YeaAk~~y~~~--------~N~~kLA~~lv~L~~y~~Ave~--AkKa~~~k~wk~v~~ac-- 1274 (1520)
.|...+..+.+.+..++++++|+.+.... .=|.-+|.+|...++++.|.-. -...+...-|..|-.-|
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 33334466777777888888887776522 2455567777778887776554 11122244564443333
Q ss_pred -hcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHH
Q 000428 1275 -VDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLF 1353 (1520)
Q Consensus 1275 -v~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y 1353 (1520)
.+-++-+.| +-.+..+|.+.|.+++++..|++.+.++..+...-..+|..|++= .|-.+++.+
T Consensus 109 i~~~~~~k~A-------------l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~---dL~KA~~m~ 172 (906)
T PRK14720 109 ILLYGENKLA-------------LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE---DKEKAITYL 172 (906)
T ss_pred HHhhhhhhHH-------------HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---hHHHHHHHH
Confidence 222222233 568999999999999999999999999999988888899988876 444455554
Q ss_pred HHhhchHHHH---HHHHhhcchHHHHHHHHhhccH
Q 000428 1354 STRLNIPKLI---RACDEQQHWKELTYLYIQYDEF 1385 (1520)
Q Consensus 1354 ~~~iNi~K~i---~~ce~~~lW~E~vfLy~~~~e~ 1385 (1520)
.+.+-.. + +-..-...|.++++.=...+++
T Consensus 173 ~KAV~~~--i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 173 KKAIYRF--IKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHHHH--HhhhcchHHHHHHHHHHhcCcccchH
Confidence 4333110 0 0011245677777665554433
No 125
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.82 E-value=17 Score=43.75 Aligned_cols=244 Identities=16% Similarity=0.145 Sum_probs=126.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHH---HH----
Q 000428 1067 PAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSD---AI---- 1139 (1520)
Q Consensus 1067 ~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~e---AI---- 1139 (1520)
.+||..|-+.|..+.|..|-..--+-.+-|..|++ ++..+.|+.=|.+++++++=|.+--+..+.....+ .|
T Consensus 4 a~IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~-m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p 82 (319)
T PF04840_consen 4 AEIARKAYEEGRPKLATKLLELEPRASKQVPLLLK-MGEDELALNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQNP 82 (319)
T ss_pred HHHHHHHHHcChHHHHHHHHHcCCChHHHHHHHhc-CCchHHHHHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhCc
Confidence 57899999999999999999887777778888887 34677899999999999965555444333222111 11
Q ss_pred ------HHHHhcCCcch----------HHH----HHHHHHhcCChhHHHHHHHHHhhh---cCCcchhHHHHHHHHhhCC
Q 000428 1140 ------ESFIRADDATQ----------FLD----VIRAAEDADVYHDLVRYLLMVRQK---VKEPKVDSELIYAYAKIDR 1196 (1520)
Q Consensus 1140 ------~~Yika~d~s~----------~~e----vi~~a~~a~~~e~Li~yL~m~r~~---~~ep~id~~lv~~yAk~~~ 1196 (1520)
..|.+..|++. |.+ .+..++...+.++.+.+|..|.+. .++..++..++--..+.=+
T Consensus 83 ~a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~ 162 (319)
T PF04840_consen 83 VASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLE 162 (319)
T ss_pred chHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 11111111111 110 111122224445555555544442 2221122211111111000
Q ss_pred h-hhH-HHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhc-----CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHH
Q 000428 1197 L-GDI-EEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS-----NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKE 1269 (1520)
Q Consensus 1197 l-~el-e~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~-----N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~ 1269 (1520)
+ .++ +.|-..-....+...=..|+..|....|..+-..+. -|----.+|+..++|++=-+.|+.-.+|=-|.-
T Consensus 163 ~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyep 242 (319)
T PF04840_consen 163 YQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEP 242 (319)
T ss_pred HHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHH
Confidence 0 001 111000001123333345666666666666666544 222225677777777777777765566667777
Q ss_pred HHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHH
Q 000428 1270 VCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISL 1316 (1520)
Q Consensus 1270 v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~L 1316 (1520)
+.++|++.|..+.|.. .++. -.. ++-+++|.+.|.|.+|+..
T Consensus 243 Fv~~~~~~~~~~eA~~-yI~k---~~~-~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 243 FVEACLKYGNKKEASK-YIPK---IPD-EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHCCCHHHHHH-HHHh---CCh-HHHHHHHHHCCCHHHHHHH
Confidence 7777777777666642 1111 111 5666666666666666554
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.72 E-value=0.26 Score=46.64 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHh--c--CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIR--A--DDATQFLDVIRAAEDADVYHDLVRYLLM 1173 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yik--a--~d~s~~~evi~~a~~a~~~e~Li~yL~m 1173 (1520)
+++.|+.+|.++...|+.++||..+-+ . .+++...-...++.+.|++++-++.|..
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 567899999999999999999999833 2 3333333456777778888887777764
No 127
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.60 E-value=6.8 Score=52.41 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=113.2
Q ss_pred ccCC-cceeeeeccCCCCCCCcEEEEehhhhccccccccCC-ceeEEEec--cCCeEEEEe-cCcEEEEeccCCCCccch
Q 000428 73 MNPN-SRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSE-QVVFWKWI--SPKMLGVVT-QTSVYHWSIEGDSEPVKM 147 (1520)
Q Consensus 73 mnP~-~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e-~vvfWkWi--s~~~l~lVT-~~aVyHW~i~~~~~P~k~ 147 (1520)
.||. .+.||-=+. .+++.|||+++.+.+..+.-.. .|.==.|- +.+.|+-.+ +..|..|++... .+...
T Consensus 540 ~~~~~~~~las~~~-----Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~ 613 (793)
T PLN00181 540 WNSYIKSQVASSNF-----EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGT 613 (793)
T ss_pred eccCCCCEEEEEeC-----CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEE
Confidence 3443 455554332 6789999999988777665543 35445564 334444444 357999999532 23333
Q ss_pred hhcccCCCCCeEEEeee-CCCCCeEEEEeccCCCCCCCccccceEEEeecccc--cccccchhhccceeeecCCCCCCce
Q 000428 148 FDRTANLTNNQIINYKC-DPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ--RSQALEAHAASFAQFKVPGNENPSV 224 (1520)
Q Consensus 148 f~R~~~L~~~qIi~Y~~-~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~--~sQ~ieghaa~F~~~~~~g~~~~~~ 224 (1520)
+.- ...|..... ++++++++..+ -.|.+.+|..... ..+.+.||...-..+.+.. .+
T Consensus 614 ~~~-----~~~v~~v~~~~~~g~~latgs-----------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~----~~ 673 (793)
T PLN00181 614 IKT-----KANICCVQFPSESGRSLAFGS-----------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD----SS 673 (793)
T ss_pred Eec-----CCCeEEEEEeCCCCCEEEEEe-----------CCCeEEEEECCCCCccceEecCCCCCEEEEEEeC----CC
Confidence 321 124544444 34566665433 3789999998754 2456789987666565531 22
Q ss_pred EEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchh
Q 000428 225 LISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAA 304 (1520)
Q Consensus 225 l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~ 304 (1520)
.++-+. .. +.++|-++......... +.+.. |. ......-.+.++..-+.|...+..|.+++||..++.
T Consensus 674 ~lvs~s--~D-----~~ikiWd~~~~~~~~~~--~~l~~-~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 674 TLVSSS--TD-----NTLKLWDLSMSISGINE--TPLHS-FM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEEE--CC-----CEEEEEeCCCCccccCC--cceEE-Ec--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 333332 22 56888888543211111 11111 11 112333456677777788888899999999998776
Q ss_pred hhh
Q 000428 305 AVY 307 (1520)
Q Consensus 305 ~i~ 307 (1520)
++.
T Consensus 742 ~~~ 744 (793)
T PLN00181 742 PVL 744 (793)
T ss_pred ceE
Confidence 553
No 128
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.40 E-value=0.28 Score=45.52 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHH
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLM 1317 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Ll 1317 (1520)
+..+|.+|..+|+|++|++..+||-.. ++. .......+|.. +..+...|...|++++++.++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~-----~~~~~~~~a~~-----------~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI--EEQ-----LGDDHPDTANT-----------LNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--HHH-----TTTHHHHHHHH-----------HHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH-----HCCCCHHHHHH-----------HHHHHHHHHHcCCHHHHHHHH
Confidence 456899999999999999999985433 211 11111233443 568889999999999999999
Q ss_pred HhhcCc
Q 000428 1318 ESGLGL 1323 (1520)
Q Consensus 1318 e~gl~l 1323 (1520)
++++.+
T Consensus 70 ~~al~i 75 (78)
T PF13424_consen 70 QKALDI 75 (78)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998643
No 129
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=5.5 Score=46.07 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHhcCCcHHHHHHHHHhhh------h-HH------HHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHH
Q 000428 1076 AQLYEEAFAIFKKFNLNVQAVNVLLDNIR------S-IE------RAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESF 1142 (1520)
Q Consensus 1076 ~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~------~-~~------~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Y 1142 (1520)
.++|+.|..-|+..++|++|-..|.+-+. + |. .|.-.+.+ -..|+.+ -..++.|+.-|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake---~~klsEv------vdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE---LSKLSEV------VDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHhHHH------HHHHHHHHHHH
Confidence 57889999999999999999887766331 1 21 11112221 1222221 11355677778
Q ss_pred HhcCCcchHHHHHHHH---HhcCChhHHHHHHHHHhh
Q 000428 1143 IRADDATQFLDVIRAA---EDADVYHDLVRYLLMVRQ 1176 (1520)
Q Consensus 1143 ika~d~s~~~evi~~a---~~a~~~e~Li~yL~m~r~ 1176 (1520)
.++|.|+--+..+.-| .+..+|++-+.+++.+=.
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 8888888777555443 346778888888875433
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=35 Score=43.86 Aligned_cols=198 Identities=16% Similarity=0.077 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhCChhhHHHH-H--HHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHH
Q 000428 1240 KLAVTLVKLKQFQGAVDAARKANSAKTWKEV-C--FACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISL 1316 (1520)
Q Consensus 1240 kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v-~--~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~L 1316 (1520)
..|..+...|+|.+|++.-.+|.. +..+- + ..|=|.-+-+++-+.. .+.--+...|.-+|+-+.
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~--~~~e~l~~~d~~eEeie~el~~Irv-----------QlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALR--ICREKLEDEDTNEEEIEEELNPIRV-----------QLAYVLQLQGQTAEASSI 246 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--HHHHhhcccccchhhHHHHHHHHHH-----------HHHHHHHHhcchHHHHHH
Confidence 348888899999999999999711 11110 0 0111111122332211 555667889999999999
Q ss_pred HHhhcCcccccc---chhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHh-------hcchHHHHHHHHhhccHH
Q 000428 1317 MESGLGLERAHM---GIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDE-------QQHWKELTYLYIQYDEFD 1386 (1520)
Q Consensus 1317 le~gl~lerAh~---~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~-------~~lW~E~vfLy~~~~e~d 1386 (1520)
|..-+....+.. ++++.=-++..+..+=.--+.|+.| +.+..++.+.|.. .......++|-...+..|
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k--~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSK--KSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 988875555542 3333222333333321111233332 2234445555553 233445566666666666
Q ss_pred HHHHHHHhcCchhhcchhhHHHHH---hhhhhHHHHHHHHHHH---hhCcch--HHHH--HHHHhhcCCHHHHHHHHH
Q 000428 1387 NAATTIMNHSPEAWDHMQFKDVAV---KVANVELYYKAVHFYL---QEHPDL--INDL--LNVLALRVDHTRVVDIMR 1454 (1520)
Q Consensus 1387 ~A~~~mi~h~~~a~~h~~fk~ii~---kvan~elyYkai~FyL---~~~P~~--l~dl--L~~l~~rlD~~rvV~~~~ 1454 (1520)
.+-...-.-|+..- ...|--++. ++.. ..+-+++...+ +.||+. +--| +.-...-.+++..+.+..
T Consensus 325 q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~-~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 325 QVRELSASLPGMSP-ESLFPILLQEATKVRE-KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHhCCccCc-hHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666665543321 112222222 2221 15778888877 448866 1111 333456677777777766
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.04 E-value=0.51 Score=51.06 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=70.2
Q ss_pred chHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhh
Q 000428 1210 ANLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFR 1281 (1520)
Q Consensus 1210 a~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~r 1281 (1520)
..+.++|-.+++.|+|+.|..+|...- -|..||.|+..+|+|++|+++..+|-.- +-+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----------~~d--- 101 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----------KID--- 101 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------CCC---
Confidence 356889999999999999999998544 6778999999999999999999995322 111
Q ss_pred HHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1282 LAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1282 LA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
+|.-.--+..+|-..|+.+++.+-|++++..-
T Consensus 102 -----------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 102 -----------APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 22223344578889999999999999886444
No 132
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.00 E-value=21 Score=42.26 Aligned_cols=251 Identities=12% Similarity=0.018 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHH-HH--HHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHH--H
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFL-DV--IRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELI--Y 1189 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~-ev--i~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv--~ 1189 (1520)
.-|.-+|..+...|+.+++...|.++ .+.+... .. ...+...|+++.-.+++..+- ...|.-...+. +
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL--DDYPRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHhH
Confidence 34555666666666777777776664 2222222 11 224556788888888877533 33454332211 1
Q ss_pred HHHh----hCChhhHHHHhc---C--cCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCH
Q 000428 1190 AYAK----IDRLGDIEEFIL---M--PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQF 1251 (1520)
Q Consensus 1190 ~yAk----~~~l~ele~fl~---~--~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y 1251 (1520)
.+.. .++.......+. . +..... ...|..+...|+|+.|...+...- -+..+|.+|...|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 2222 344444443332 1 222222 346778899999999988888643 345678888889999
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchh
Q 000428 1252 QGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIF 1331 (1520)
Q Consensus 1252 ~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~f 1331 (1520)
++|++...++-.. |.. ...... . ..-.+..+|...|.+++++.+|++..........+.
T Consensus 165 ~eA~~~l~~~l~~--~~~-------~~~~~~-~-----------~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 165 KEGIAFMESWRDT--WDC-------SSMLRG-H-----------NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred HHHHHHHHhhhhc--cCC-------CcchhH-H-----------HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 9999998884322 110 000000 0 012456889999999999999999864433112211
Q ss_pred H--HHHHHHhccChhhhHHHHHHHHHhh-chHHH-HHHHHhhcchHHHHHHHHhhccHHHHHHHHHh
Q 000428 1332 T--ELGVLYARYRYEKLMEHIKLFSTRL-NIPKL-IRACDEQQHWKELTYLYIQYDEFDNAATTIMN 1394 (1520)
Q Consensus 1332 T--eLailyAky~pekLmehlk~y~~~i-Ni~K~-i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~ 1394 (1520)
. ..+.++..+..+.-.+.... |..+ ....- .........+.-.+..++..|+++.|...+-.
T Consensus 224 ~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 224 DLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 11234444444443333333 2111 11000 00000112222456667777888887755543
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.95 E-value=0.23 Score=44.81 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcC-ChhHHHHHHHHHhh
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDAD-VYHDLVRYLLMVRQ 1176 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~-~~e~Li~yL~m~r~ 1176 (1520)
.++++|+.+|..+...|+.++||.+|-++ ++++.+..+-.+....| ++++-+.++++|.+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 36889999999999999999999999998 44455556777777777 68888888886554
No 134
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.91 E-value=1.7 Score=54.42 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=15.8
Q ss_pred CCceeeeecccCCCCCCCCcccccceeeecCeeEEEEe
Q 000428 6 APISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRE 43 (1520)
Q Consensus 6 ~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre 43 (1520)
+|+.+++ |.+..+.|++++++- +.|||+|+.
T Consensus 21 ~~l~~k~---lg~~~~~p~~ls~np----ngr~v~V~g 51 (443)
T PF04053_consen 21 LPLSVKE---LGSCEIYPQSLSHNP----NGRFVLVCG 51 (443)
T ss_dssp B----EE---EEE-SS--SEEEE-T----TSSEEEEEE
T ss_pred eeEEecc---CCCCCcCCeeEEECC----CCCEEEEEc
Confidence 4555553 445677788887765 788888844
No 135
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.90 E-value=30 Score=42.60 Aligned_cols=110 Identities=24% Similarity=0.275 Sum_probs=77.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcC-cCcchH-HHH
Q 000428 1138 AIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILM-PNVANL-QNV 1215 (1520)
Q Consensus 1138 AI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~-~N~a~v-~~v 1215 (1520)
.+..|+++++.+.=.+++.-+.+..-.+.|+.++...|-....|-+ ..+|..+.. ++.+.+ -..
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~--------------k~~e~~l~~h~~~p~L~~tL 334 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLI--------------KAAEKWLKQHPEDPLLLSTL 334 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHH--------------HHHHHHHHhCCCChhHHHHH
Confidence 5566677766666666666666655555577777754433222222 223455554 666677 559
Q ss_pred HhhhhccccHHHHHHHHHh-------hcCHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1216 GDRLYDDTLYEAAKIIYAF-------ISNWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1216 gd~~~eeg~YeaAk~~y~~-------~~N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
|..|+.+++|..|...++. .++|.-+|.+|-++|+.+.|-+..+++
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998874 458999999999999999999988874
No 136
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.81 E-value=2 Score=47.90 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=58.7
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHH-HhcCC--hhHHHHHHHHHhhhcCCcchhHHH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAA-EDADV--YHDLVRYLLMVRQKVKEPKVDSEL 1187 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a-~~a~~--~e~Li~yL~m~r~~~~ep~id~~l 1187 (1520)
-++++.|+.||..++..|+.++|+.+|-++ +|++-+.....+. ...|+ +++-...|..+.+.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---------- 139 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---------- 139 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----------
Confidence 578999999999999999999999999887 3333333333332 33343 24444444432221
Q ss_pred HHHHHhhCChhhHHHHhcCcCcchH-HHHHhhhhccccHHHHHHHHHhh
Q 000428 1188 IYAYAKIDRLGDIEEFILMPNVANL-QNVGDRLYDDTLYEAAKIIYAFI 1235 (1520)
Q Consensus 1188 v~~yAk~~~l~ele~fl~~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~ 1235 (1520)
.++.... ...|-.+++.|+|+.|...|+..
T Consensus 140 ------------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 140 ------------------DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred ------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1333333 55677777777777777777765
No 137
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=3.8 Score=51.54 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=62.5
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChh-hHHHHHHHHhcchhhhHH
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAK-TWKEVCFACVDAEEFRLA 1283 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k-~wk~v~~acv~~~e~rLA 1283 (1520)
.+-|..+|..|+|.+|..-|+..- -|+.-|.||.+|+.++.|++-|+++...+ .| ..+|+ |-|
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~---~kgy~-----RKg 433 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF---IKAYL-----RKG 433 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH---HHHHH-----HHH
Confidence 346999999999999999999643 57778999999999999999988876432 23 12222 221
Q ss_pred HhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1284 QICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1284 ~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
..+.-.-.|++++.-|+.|+.++..
T Consensus 434 ------------------~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 434 ------------------AALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHhcCch
Confidence 2223344677788888888655533
No 138
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.73 E-value=1.2 Score=53.94 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhcc
Q 000428 1085 IFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGL 1134 (1520)
Q Consensus 1085 LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~ 1134 (1520)
++|--|.|++|+-.+-.| ++-|.+.-.++.+.--+|.||..|-..|+
T Consensus 104 tlKv~G~fdeA~~cc~rh---Ld~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRH---LDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred hhhhhcccchHHHHHHHH---hHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 456567888888777766 45677788888888999999999977653
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.62 E-value=0.6 Score=50.27 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=44.3
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc-----------CHHHHHHHHHHhcCHHHHHHHHHHhCC
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS-----------NWAKLAVTLVKLKQFQGAVDAARKANS 1263 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~-----------N~~kLA~~lv~L~~y~~Ave~AkKa~~ 1263 (1520)
....|..+...|+|+.|...|...- -+..+|.+|.++|+|++|+.+.+++-.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678999999999999999998553 367789999999999999999988653
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.55 E-value=1.2 Score=47.72 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=68.7
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHH-hCChhHHHHHHHHHHhhccHHHHHHHHHhc--C
Q 000428 1070 GEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFR-VEEDAVWSQVAKAQLREGLVSDAIESFIRA--D 1146 (1520)
Q Consensus 1070 A~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek-~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~ 1146 (1520)
|..+...|.+++|...|++ |+.. ... ...+.+|+.+|..+...|+.++|+.+|-++ .
T Consensus 42 g~~~~~~g~~~~A~~~~~~------al~l--------------~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYE------AMRL--------------EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHcCCHHHHHHHHHH------HHhc--------------cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555567777777777777 3322 111 113458999999999999999999999887 2
Q ss_pred Ccc---hHHHHHHHHH-------hcCChhHHHHHHHHHhh-----hcCCcchhHHHHHHHHhhCCh
Q 000428 1147 DAT---QFLDVIRAAE-------DADVYHDLVRYLLMVRQ-----KVKEPKVDSELIYAYAKIDRL 1197 (1520)
Q Consensus 1147 d~s---~~~evi~~a~-------~a~~~e~Li~yL~m~r~-----~~~ep~id~~lv~~yAk~~~l 1197 (1520)
+|. .+..+..+.. ..|++++-+.++..+.. ...+|.-..++..++..+|++
T Consensus 102 ~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 102 NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 332 2223333333 66777766666665543 256666666666666666654
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=1.9 Score=49.96 Aligned_cols=119 Identities=23% Similarity=0.352 Sum_probs=83.7
Q ss_pred ChhhHH---HHHHHHhcchhhhHHHhhc--cccccccccHHHH--HHHHHhcCCHHHHHHHHHhhcCccccccchhH-HH
Q 000428 1263 SAKTWK---EVCFACVDAEEFRLAQICG--LNIIVQVDDLEEV--SEYYQNRGYFNELISLMESGLGLERAHMGIFT-EL 1334 (1520)
Q Consensus 1263 ~~k~wk---~v~~acv~~~e~rLA~~~g--l~li~~~d~l~el--v~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fT-eL 1334 (1520)
.++.|- +|+-|.++.++..+||.|- |+--.+.+.=..- .-.+|.+|.+++|+++|++-+.-+.-|..++- -+
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 355565 6899999999999999875 2223333322111 34689999999999999999887777655543 35
Q ss_pred HHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHH
Q 000428 1335 GVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAA 1389 (1520)
Q Consensus 1335 ailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~ 1389 (1520)
|++-|-=++---..+|..|.... ..+...|.|+.-+|...|+|.+|+
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHH
Confidence 66666555554444444454443 223577999999999999999999
No 142
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.47 E-value=9 Score=47.61 Aligned_cols=187 Identities=12% Similarity=0.090 Sum_probs=103.0
Q ss_pred CeeEEEEecCCCC---eEEEEEcCCCC--CccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccccc
Q 000428 36 DKYICVRETAPQN---SVVIIDMNQPM--QPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQM 110 (1520)
Q Consensus 36 dk~icvre~~~~~---~v~Ivdl~~~~--~~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~ 110 (1520)
.|.+.|....++. ++.+.|....+ ..++-+-..-+.-.+|..+.||.-.. ......|.++++++.+.-.-..+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~--~~g~~~i~i~dl~~G~~~~l~~~ 241 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVRQVASF 241 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEe--cCCCcEEEEEECCCCCeEEccCC
Confidence 6777777654332 89999975433 23333333445666777777775311 11246799999987642221223
Q ss_pred CCceeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCc
Q 000428 111 SEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185 (1520)
Q Consensus 111 ~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~ 185 (1520)
+..+.-=.|-.+ +.|+++.. ..+|.|++++. .+..++.-. .-+.+..-++|++|++.+.-.
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg-~~~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~-------- 307 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ-------- 307 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEccCCC-----CCcCceEECCCCCEEEEEeCC--------
Confidence 333323356533 45777643 35999998643 344444322 235567889999999887632
Q ss_pred cccceEEEeeccc--ccccccc--hhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 186 LVKGNMQLFSVDQ--QRSQALE--AHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 186 ~i~G~mQLyS~er--~~sQ~ie--ghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
.|..|||.++- +..+.+. |+......+..+ ...++|+.+.... ..+.++++..
T Consensus 308 --~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD-----G~~Ia~~~~~~g~----~~I~~~dl~~ 364 (429)
T PRK03629 308 --AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD-----GKFMVMVSSNGGQ----QHIAKQDLAT 364 (429)
T ss_pred --CCCceEEEEECCCCCeEEeecCCCCccCEEECCC-----CCEEEEEEccCCC----ceEEEEECCC
Confidence 25678886643 2223332 222222333222 3466776654332 4677777743
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.36 E-value=0.83 Score=55.36 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=59.0
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHHHHH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSELIY 1189 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~lv~ 1189 (1520)
.+++..|+.+|.+++..|++++|+..+-++ +++..|...-.+++..|++++-+.+++.|-+. -.++.+..-+..
T Consensus 33 P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 457899999999999999999999999888 55566777778888899999999999877664 344444333444
Q ss_pred HHH
Q 000428 1190 AYA 1192 (1520)
Q Consensus 1190 ~yA 1192 (1520)
|..
T Consensus 113 ~~~ 115 (356)
T PLN03088 113 CDE 115 (356)
T ss_pred HHH
Confidence 433
No 144
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.35 E-value=6.4 Score=48.90 Aligned_cols=189 Identities=13% Similarity=0.193 Sum_probs=104.5
Q ss_pred ecCeeEEEEecCCCCeEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccccc-
Q 000428 34 ESDKYICVRETAPQNSVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQM- 110 (1520)
Q Consensus 34 eSdk~icvre~~~~~~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~- 110 (1520)
.+.+.+.+....++.++.+.|+..+.. .+..+-..-+...+|..+-||.-.. ..+...|.++|++++. ++..+-
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~--~~g~~~I~~~d~~tg~-~~~lt~~ 285 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALS--KTGSLNLYVMDLASGQ-IRQVTDG 285 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEc--CCCCcEEEEEECCCCC-EEEccCC
Confidence 345566665444444899999875431 1222222334678999888876421 1112468888998763 333222
Q ss_pred CCceeEEEeccC-CeEEEEecC----cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCc
Q 000428 111 SEQVVFWKWISP-KMLGVVTQT----SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185 (1520)
Q Consensus 111 ~e~vvfWkWis~-~~l~lVT~~----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~ 185 (1520)
...+....|-.+ +.|+.+++. .+|.+++++. .+.++.. .+........++|++|++.++-. .+
T Consensus 286 ~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~~~~lt~-----~~~~~~~~~~SpDG~~Ia~~~~~------~g 353 (429)
T PRK03629 286 RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-APQRITW-----EGSQNQDADVSSDGKFMVMVSSN------GG 353 (429)
T ss_pred CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-CeEEeec-----CCCCccCEEECCCCCEEEEEEcc------CC
Confidence 335677889854 468888864 6888888653 3343322 11223456779999999988743 11
Q ss_pred cccceEEEeeccccccccc-chhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecC
Q 000428 186 LVKGNMQLFSVDQQRSQAL-EAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELG 248 (1520)
Q Consensus 186 ~i~G~mQLyS~er~~sQ~i-eghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~ 248 (1520)
...+-++..+.+.-+.| +++......+ ++....+.|+...... +.|.++.++
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~~~~~~~p~~-----SpDG~~i~~~s~~~~~----~~l~~~~~~ 406 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTDTFLDETPSI-----APNGTMVIYSSSQGMG----SVLNLVSTD 406 (429)
T ss_pred --CceEEEEECCCCCeEEeCCCCCCCCceE-----CCCCCEEEEEEcCCCc----eEEEEEECC
Confidence 12344455544433333 2221111222 2334456666553222 678998884
No 145
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=8.7 Score=50.93 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=117.9
Q ss_pred HHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChh
Q 000428 1041 LLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDA 1120 (1520)
Q Consensus 1041 LlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~e 1120 (1520)
.++.+-.+.+.+.+-..+..+. |...+...|.--+.++.-...+.+.+.|.+|.++|+ +..+++
T Consensus 497 ~~~~~~~~~nretv~~l~~~~~--~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~--------------~~~~~e 560 (911)
T KOG2034|consen 497 FLVLHKDELNRETVYQLLASHG--RQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLL--------------NQRNPE 560 (911)
T ss_pred HHHhhHHhhhHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hccchh
Confidence 3334434445555444433322 333444444444555554444555555555555554 445888
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCCcchHH---HHHHHHHhc---CChhHHHHHHHHHhh--hcCCcchhHHHHHHHH
Q 000428 1121 VWSQVAKAQLREGLVSDAIESFIRADDATQFL---DVIRAAEDA---DVYHDLVRYLLMVRQ--KVKEPKVDSELIYAYA 1192 (1520)
Q Consensus 1121 Vw~~lgka~l~~~~v~eAI~~Yika~d~s~~~---evi~~a~~a---~~~e~Li~yL~m~r~--~~~ep~id~~lv~~yA 1192 (1520)
+.|+++-..+.. ..++-++..++.+|..-.. -++..+..- .+...-++||+=++. ...+|.|-+.+...||
T Consensus 561 l~yk~ap~Li~~-~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya 639 (911)
T KOG2034|consen 561 LFYKYAPELITH-SPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYA 639 (911)
T ss_pred hHHHhhhHHHhc-CcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhh
Confidence 888888777553 5777788888887655544 333334433 466788999998876 3889999999999999
Q ss_pred hhCChhhHH--HHhc---CcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1193 KIDRLGDIE--EFIL---MPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1193 k~~~l~ele--~fl~---~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
+..+-..+- +++. +.+..++.=.-..|-+.+.-.+ -..+|+.++.|..|||+|-+.+ .+..
T Consensus 640 ~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra-------------~V~l~~~l~l~~~aVdlAL~~d-~dla 705 (911)
T KOG2034|consen 640 KHERDDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRA-------------CVFLLCMLNLFEDAVDLALQFD-IDLA 705 (911)
T ss_pred cCCccchHHHHHHHhhccccceecHHHHHHHHHHhCccce-------------eeeHHHHHHHHHHHHHHHhhcC-HHHH
Confidence 977765552 3322 2333343333333333332222 2467788999999999999966 5444
Q ss_pred H
Q 000428 1268 K 1268 (1520)
Q Consensus 1268 k 1268 (1520)
|
T Consensus 706 k 706 (911)
T KOG2034|consen 706 K 706 (911)
T ss_pred h
Confidence 3
No 146
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.18 E-value=1.4 Score=57.87 Aligned_cols=93 Identities=12% Similarity=0.030 Sum_probs=69.7
Q ss_pred cCcchHHHHHhhhhccccHHHHHHHHHhhc-----C---HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcch
Q 000428 1207 PNVANLQNVGDRLYDDTLYEAAKIIYAFIS-----N---WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAE 1278 (1520)
Q Consensus 1207 ~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~-----N---~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~ 1278 (1520)
.|....-..+..|..++.+|+|...+.+.- | ...+|.++.++|+|++|+++++++-.+ .-
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------------~p 185 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ------------HP 185 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------------CC
Confidence 344444678899999999999999988654 3 344599999999999999999994321 11
Q ss_pred hhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1279 EFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1279 e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
++.-| +-+....+...|..++|...|++++...
T Consensus 186 ~~~~~-------------~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 186 EFENG-------------YVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CcHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22233 3477788999999999999999996443
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.42 Score=58.05 Aligned_cols=102 Identities=23% Similarity=0.298 Sum_probs=80.3
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc-----------------------CHHHHHHHHHHhcCHHHHHHHHHHh-----CC
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS-----------------------NWAKLAVTLVKLKQFQGAVDAARKA-----NS 1263 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~-----------------------N~~kLA~~lv~L~~y~~Ave~AkKa-----~~ 1263 (1520)
...-|+.+|.+|.|+.|+..|..+- -+..||.||.|+++|.+|++.+.++ +|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3567888999999999999988743 3445699999999999999999884 33
Q ss_pred hhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccCh
Q 000428 1264 AKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRY 1343 (1520)
Q Consensus 1264 ~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~p 1343 (1520)
.|.. ||-+ +.+...|.|+.|+..|++++.++.....+=.||..|--|++.
T Consensus 291 ~KAL------------yRrG------------------~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 291 VKAL------------YRRG------------------QALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hhHH------------HHHH------------------HHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 3333 3443 567788999999999999999998888888888887666653
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.01 E-value=1.1 Score=55.33 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=33.8
Q ss_pred HhhhhccccHHHHHHHHHh--------hcCHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1216 GDRLYDDTLYEAAKIIYAF--------ISNWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1216 gd~~~eeg~YeaAk~~y~~--------~~N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
++.|.+.++|+.|..+-+. ..-|..||.||+++|+|+.|+-+-.-.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3445566667766666553 338999999999999999999666543
No 149
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.95 E-value=5.6 Score=48.56 Aligned_cols=204 Identities=15% Similarity=0.081 Sum_probs=125.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHH
Q 000428 1154 VIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYA 1233 (1520)
Q Consensus 1154 vi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~ 1233 (1520)
-.++|...|+.+.=.+||..+++...++.+--+ -.-...+...|||.+|+....
T Consensus 124 aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~--------------------------ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 124 AAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE--------------------------LTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred HHHHHHhcccHHHHHHHHHHHhccCCCchHHHH--------------------------HHHHHHHHhCCCchhHHHHHH
Confidence 345566666666666777665554333333111 123344555777777776665
Q ss_pred hhc----CHH---HH-HHHHHHhcCHHHHHHHHHHhCChhhHHHH-------------HHHHhcchhhhH-H-Hhhccc-
Q 000428 1234 FIS----NWA---KL-AVTLVKLKQFQGAVDAARKANSAKTWKEV-------------CFACVDAEEFRL-A-QICGLN- 1289 (1520)
Q Consensus 1234 ~~~----N~~---kL-A~~lv~L~~y~~Ave~AkKa~~~k~wk~v-------------~~acv~~~e~rL-A-~~~gl~- 1289 (1520)
+.- +.- +| ..+|.++|+|++..++-.+-.+....++. ...|.+.+...= - +=..++
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 433 111 11 77888888888888776665555444432 122221111100 0 000111
Q ss_pred -cccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHh
Q 000428 1290 -IIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDE 1368 (1520)
Q Consensus 1290 -li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~ 1368 (1520)
+--+|+....++.+|++.|..++|.+..+.++.-..- -+|+-+|..-+|++=-+-+|.-...+.-+ .++
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----~~L~~~~~~l~~~d~~~l~k~~e~~l~~h-----~~~ 327 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----PRLCRLIPRLRPGDPEPLIKAAEKWLKQH-----PED 327 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----hhHHHHHhhcCCCCchHHHHHHHHHHHhC-----CCC
Confidence 5557888899999999999999999999999733322 23888888887766555555544444433 566
Q ss_pred hcchHHHHHHHHhhccHHHHHHHHH
Q 000428 1369 QQHWKELTYLYIQYDEFDNAATTIM 1393 (1520)
Q Consensus 1369 ~~lW~E~vfLy~~~~e~d~A~~~mi 1393 (1520)
+.+|.-+=+||.+.++|-+|-...-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7889999999999999998874443
No 150
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.90 E-value=24 Score=43.19 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=82.5
Q ss_pred eEEEEecCC-CC-e-EEEEEcCCCCCccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCce
Q 000428 38 YICVRETAP-QN-S-VVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQV 114 (1520)
Q Consensus 38 ~icvre~~~-~~-~-v~Ivdl~~~~~~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~v 114 (1520)
-+|.|.... ++ . -+++|...-..-.- .......-..|..+-+|+--.-.|..-.+|.|+|+++++-+.. .+ +.+
T Consensus 94 ~~~r~~~~~~~~~~~evllD~n~l~~~~~-~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-~~~ 170 (414)
T PF02897_consen 94 VLYRRKTDEEDGPEEEVLLDPNELAKDGG-YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-ENP 170 (414)
T ss_dssp EEEEEETTS-TS-C-EEEEEGGGGSTTSS--EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-EEE
T ss_pred EEEEEecccCCCCceEEEEcchHhhccCc-eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-ccc
Confidence 366666652 23 4 78888754221111 3334445568999988887422344446799999999966653 32 234
Q ss_pred eE--EEeccC-CeEEEEe------------cCcEEEEeccC-CCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEecc
Q 000428 115 VF--WKWISP-KMLGVVT------------QTSVYHWSIEG-DSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIA 177 (1520)
Q Consensus 115 vf--WkWis~-~~l~lVT------------~~aVyHW~i~~-~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~ 177 (1520)
.| -.|.++ +.+-.++ +..||-|.++. .+..+-||+-...- ...++-..++|++|+++.-.+
T Consensus 171 ~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 171 KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEES
T ss_pred ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC--cEEEEEEecCcccEEEEEEEc
Confidence 44 489988 4444443 55699999964 33445678655333 247778889999998876655
No 151
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains. The N terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller []. Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1UTC_B 3GD1_I 3GC3_B 1BPO_C 1C9I_B 1C9L_A 2XZG_A 2XZH_A.
Probab=91.90 E-value=0.16 Score=41.99 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCCCCcccccceeeecCeeEEEEecCCCCeEEEEEcC
Q 000428 20 GINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMN 56 (1520)
Q Consensus 20 Gi~~~~i~f~~~t~eSdk~icvre~~~~~~v~Ivdl~ 56 (1520)
|.+++.|.|.+.++||++|+|.++....++|.++|+.
T Consensus 1 ~~~~q~i~f~~~~~es~~~iigi~~~~~G~v~l~sve 37 (37)
T PF01394_consen 1 GANSQIINFRTAPMESWKFIIGISGRVKGQVQLYSVE 37 (37)
T ss_dssp TCCCEEEECTTECCCEEEEEEEEETCTEEEEEEEETT
T ss_pred CCcccEEEEEeCCCcCeEEEEEEEeeeeeEEEEEECC
Confidence 5678999999999999999999995555699999873
No 152
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.73 E-value=9.5 Score=47.33 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=100.7
Q ss_pred CcEEEEehhhhccccccccCCceeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCC
Q 000428 92 DHLQIFNIELKAKIKSHQMSEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDP 166 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~ 166 (1520)
.+|.|+|.+......-..-.+.+..=+|-.+ +.|+.++. ..+|.|++.+. .+..+.+- .+ .....+.++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g-~~~~l~~~----~g-~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG-QRELVASF----RG-INGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC-CEEEeccC----CC-CccCceECC
Confidence 4699999876543222223456777788744 56888763 35999999643 23333321 11 123678899
Q ss_pred CCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEe
Q 000428 167 TEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIE 246 (1520)
Q Consensus 167 ~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~E 246 (1520)
|+++++++.-. +| ...+-+++.+.+..+.+-.|.+....... +...+-+.|+... .|. ..|.+++
T Consensus 258 DG~~l~~~~s~------~g--~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~---spDG~~l~f~sd~-~g~---~~iy~~d 322 (433)
T PRK04922 258 DGRRLALTLSR------DG--NPEIYVMDLGSRQLTRLTNHFGIDTEPTW---APDGKSIYFTSDR-GGR---PQIYRVA 322 (433)
T ss_pred CCCEEEEEEeC------CC--CceEEEEECCCCCeEECccCCCCccceEE---CCCCCEEEEEECC-CCC---ceEEEEE
Confidence 99999876522 11 12344455555554555555433222211 2223445555432 221 4688887
Q ss_pred cCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccc---eEEEEeccchhh
Q 000428 247 LGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLG---LLFVYDLETAAA 305 (1520)
Q Consensus 247 i~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G---~l~lyDl~tg~~ 305 (1520)
++.. +. ..+.+. +++..+..+|+.=..|++.+..| .|++||+.||..
T Consensus 323 l~~g--~~------~~lt~~----g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 323 ASGG--SA------ERLTFQ----GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCCC--Ce------EEeecC----CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 7432 11 112222 24455667787666677766543 699999999874
No 153
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.71 E-value=22 Score=45.91 Aligned_cols=280 Identities=15% Similarity=0.241 Sum_probs=142.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC-cHHHHHHHHHhhh---hHHH-HHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHH
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNL-NVQAVNVLLDNIR---SIER-AVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFI 1143 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~-~~~Ai~vLi~~~~---~~~~-A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yi 1143 (1520)
..+...+++++|=+..+|+++=+ .-+|++-.++-.. .|+. |..+|.-+++++-.|+-|+
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gk---------------- 207 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGK---------------- 207 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhccc----------------
Confidence 35678899999999999999733 4445555544322 3554 5555556666665444222
Q ss_pred hcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccc
Q 000428 1144 RADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDT 1223 (1520)
Q Consensus 1144 ka~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg 1223 (1520)
..+ .-|.+|.+|+..--+++.+-.+|- ++. .-.+++++--.|| +-+++|.++..|
T Consensus 208 ----Sn~-----------qlw~elcdlis~~p~~~~slnvda-iiR--~gi~rftDq~g~L-------w~SLAdYYIr~g 262 (835)
T KOG2047|consen 208 ----SNH-----------QLWLELCDLISQNPDKVQSLNVDA-IIR--GGIRRFTDQLGFL-------WCSLADYYIRSG 262 (835)
T ss_pred ----chh-----------hHHHHHHHHHHhCcchhcccCHHH-HHH--hhcccCcHHHHHH-------HHHHHHHHHHhh
Confidence 111 345566666652111111111110 121 2224455555565 688999999999
Q ss_pred cHHHHHHHHHh-------hcCHHHHHHHHHHhcC--HHHHHHHH-HHhCCh-hhHH-HHHHHHhc---chhhhHHHhhcc
Q 000428 1224 LYEAAKIIYAF-------ISNWAKLAVTLVKLKQ--FQGAVDAA-RKANSA-KTWK-EVCFACVD---AEEFRLAQICGL 1288 (1520)
Q Consensus 1224 ~YeaAk~~y~~-------~~N~~kLA~~lv~L~~--y~~Ave~A-kKa~~~-k~wk-~v~~acv~---~~e~rLA~~~gl 1288 (1520)
+||.|+.+|.. +.||.++=-.|..-.+ .+.=++.| .+..+. +.|+ +...|-.+ ++.--++....|
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999984 3488888555554222 22222211 122222 2232 22222221 111112111111
Q ss_pred cccccc-ccHHHHHHHHHhcCCHHHHHHHHHhhcC-c--cccccchhHHHHHHHhcc-ChhhhHHHHHH-HHHhh--chH
Q 000428 1289 NIIVQV-DDLEEVSEYYQNRGYFNELISLMESGLG-L--ERAHMGIFTELGVLYARY-RYEKLMEHIKL-FSTRL--NIP 1360 (1520)
Q Consensus 1289 ~li~~~-d~l~elv~~Ye~~G~f~eLI~Lle~gl~-l--erAh~~~fTeLailyAky-~pekLmehlk~-y~~~i--Ni~ 1360 (1520)
.==.|. ++-..-+..|+ |+..+-|.-|..+.. . -++ .|-+.-|-+.+||+ ...+-++..+. |.+.. |-+
T Consensus 343 RQn~~nV~eW~kRV~l~e--~~~~~~i~tyteAv~~vdP~ka-~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYE--GNAAEQINTYTEAVKTVDPKKA-VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhhhc--CChHHHHHHHHHHHHccCcccC-CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 111111 23334455554 667777777776642 2 234 55555566666554 22222333333 32222 333
Q ss_pred HHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1361 KLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNH 1395 (1520)
Q Consensus 1361 K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h 1395 (1520)
.+=. -+..|-++.-.-....+++.|..+|-..
T Consensus 420 ~v~d---La~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 420 TVED---LAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred chHH---HHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 2211 1455777777777888998888866654
No 154
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.66 E-value=5.3 Score=51.65 Aligned_cols=272 Identities=15% Similarity=0.254 Sum_probs=149.3
Q ss_pred cCeeEEEEecCCCCeEEEEEcCCCCCcc-----ccccCcccccccCCccee--eeeccCCCCCCCcEEEEehhhhccccc
Q 000428 35 SDKYICVRETAPQNSVVIIDMNQPMQPL-----RRPITADSALMNPNSRIL--ALKAQLPGTTQDHLQIFNIELKAKIKS 107 (1520)
Q Consensus 35 Sdk~icvre~~~~~~v~Ivdl~~~~~~~-----r~pi~AdsAimnP~~~ii--Alra~~~~~~g~~lQiFnle~k~klks 107 (1520)
+++-.|..- +.|.+||++....-. ..+-.=+.--.-|.++++ |-| +..|.||.|++-.-+++
T Consensus 31 G~~L~t~~~----d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r-------s~llrv~~L~tgk~irs 99 (775)
T KOG0319|consen 31 GQHLYTACG----DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR-------SQLLRVWSLPTGKLIRS 99 (775)
T ss_pred CCEEEEecC----ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec-------cceEEEEEcccchHhHh
Confidence 455555543 278899988654311 122222334456776644 444 68899999999988877
Q ss_pred ccc--CCceeEEEeccCCeEEEEe----cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCC
Q 000428 108 HQM--SEQVVFWKWISPKMLGVVT----QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSA 181 (1520)
Q Consensus 108 ~~~--~e~vvfWkWis~~~l~lVT----~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~ 181 (1520)
..- .-||+-..--... ++++ +..|-.|++.++.- +--|-=||.. .--+-+..+.. .|++..|
T Consensus 100 wKa~He~Pvi~ma~~~~g--~LlAtggaD~~v~VWdi~~~~~-th~fkG~gGv--Vssl~F~~~~~-~~lL~sg------ 167 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTG--TLLATGGADGRVKVWDIKNGYC-THSFKGHGGV--VSSLLFHPHWN-RWLLASG------ 167 (775)
T ss_pred HhhccCCCeEEEEEcCCC--ceEEeccccceEEEEEeeCCEE-EEEecCCCce--EEEEEeCCccc-hhheeec------
Confidence 666 5566666554433 4443 45788898854210 0001111111 00011111111 2666666
Q ss_pred CCCccccceEEEeecccccc--cccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCC---CCCCCc
Q 000428 182 ERPQLVKGNMQLFSVDQQRS--QALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQ---PGKPSF 256 (1520)
Q Consensus 182 ~~~~~i~G~mQLyS~er~~s--Q~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~---~~~~~f 256 (1520)
...|.+=+|+..++.+ -..++|-.+-..+-+.- .+.-+..+.|... +.|=|.-.. .-.|.|
T Consensus 168 ----~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~---d~~~~ls~~RDkv-------i~vwd~~~~~~l~~lp~y 233 (775)
T KOG0319|consen 168 ----ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE---DSLELLSVGRDKV-------IIVWDLVQYKKLKTLPLY 233 (775)
T ss_pred ----CCCceEEEEEcccCchHHHHHHhhhhheeeeeecc---CCceEEEeccCcE-------EEEeehhhhhhhheechh
Confidence 3588999999998877 33444544444442222 2333333334211 223333111 011222
Q ss_pred ccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEE-eeccCCCCcEEEEcCCC
Q 000428 257 TKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFL-TSEASSLGGFYAINRRG 335 (1520)
Q Consensus 257 ~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~-~~~~~~~~Gi~~Vn~~G 335 (1520)
+.--.-++.+. +...|-+.+|...-.|.+.+||.+||.|+|..|.++++=|. .+..+..+++++|+..-
T Consensus 234 e~~E~vv~l~~----------~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 234 ESLESVVRLRE----------ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred hheeeEEEech----------hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence 21111122221 33445668888899999999999999999999999533333 34456667788888887
Q ss_pred cEEEEEeecCccccchhc
Q 000428 336 QVLLATVNEATIVPFVSG 353 (1520)
Q Consensus 336 qVl~v~i~~~~ivpyi~~ 353 (1520)
+++-+..++-+|+.-|..
T Consensus 304 nl~l~d~~~l~i~k~ivG 321 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIVG 321 (775)
T ss_pred eEEEEEccccEEehhhcC
Confidence 877776666666655543
No 155
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.64 E-value=3.2 Score=47.59 Aligned_cols=111 Identities=22% Similarity=0.230 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChh
Q 000428 1121 VWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLG 1198 (1520)
Q Consensus 1121 Vw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ 1198 (1520)
..-+||-.||..|+..-|-..+.|| -||+.|.. + +.+...|-+.|..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a----------------~--------------~~~A~~Yq~~Ge~~ 86 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLA----------------H--------------LVRAHYYQKLGEND 86 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH----------------H--------------HHHHHHHHHcCChh
Confidence 4456788888888888887777775 45544321 1 12456677888887
Q ss_pred hH-HHH---hc-CcCcchH-HHHHhhhhccccHHHHHHHHHhhc----------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1199 DI-EEF---IL-MPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS----------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1199 el-e~f---l~-~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~----------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
.. +.| ++ .+++.+| ++.|--+++.|.|+.|..-|+... -|..++.|-.+.|++.+|-+..+++
T Consensus 87 ~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 87 LADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred hHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 77 566 33 4888999 779999999999999999888665 6778888999999999998888884
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.61 E-value=2.2 Score=46.23 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
.++.=|+-||..+...|++++||++|-+|
T Consensus 67 ~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 67 WSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 38889999999999999999999999883
No 157
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.57 E-value=15 Score=45.50 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=91.1
Q ss_pred eEEEEEcCCCC--CccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccC-CeE
Q 000428 49 SVVIIDMNQPM--QPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISP-KML 125 (1520)
Q Consensus 49 ~v~Ivdl~~~~--~~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~-~~l 125 (1520)
+|.+.|....+ .+++.+-..-+....|..+-||.-.. ......|.++|+.+.++-.-..++.....=+|-.+ +.|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~--~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSF--ERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEec--CCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 89999975322 12222222334445677777776421 11245799999987654322223333334467544 457
Q ss_pred EEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccc--c
Q 000428 126 GVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ--Q 199 (1520)
Q Consensus 126 ~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er--~ 199 (1520)
+++.. ..+|-|++++.. ..++. ++.. ...+...++|++|++.+.-. .|..|||.++- +
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~-~~~lt-~~~~----~~~~~~~spDG~~l~f~sd~----------~g~~~iy~~dl~~g 326 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQ-LTRLT-NHFG----IDTEPTWAPDGKSIYFTSDR----------GGRPQIYRVAASGG 326 (433)
T ss_pred EEEEeCCCCceEEEEECCCCC-eEECc-cCCC----CccceEECCCCCEEEEEECC----------CCCceEEEEECCCC
Confidence 76643 359999996532 22222 2211 12345678999999887522 34568887652 2
Q ss_pred ccccc--chhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecC
Q 000428 200 RSQAL--EAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELG 248 (1520)
Q Consensus 200 ~sQ~i--eghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~ 248 (1520)
..+.+ +|+......+.. ..+.++|..+..+. ..|.++++.
T Consensus 327 ~~~~lt~~g~~~~~~~~Sp-----DG~~Ia~~~~~~~~----~~I~v~d~~ 368 (433)
T PRK04922 327 SAERLTFQGNYNARASVSP-----DGKKIAMVHGSGGQ----YRIAVMDLS 368 (433)
T ss_pred CeEEeecCCCCccCEEECC-----CCCEEEEEECCCCc----eeEEEEECC
Confidence 22222 333222223322 33467776553222 468888774
No 158
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.53 E-value=13 Score=45.68 Aligned_cols=186 Identities=9% Similarity=0.074 Sum_probs=96.4
Q ss_pred eeEEEEecCC--C-C-eEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccccc
Q 000428 37 KYICVRETAP--Q-N-SVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQM 110 (1520)
Q Consensus 37 k~icvre~~~--~-~-~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~ 110 (1520)
|.+.|+.... + . ++.++|....+. ++...-..-+.-.+|..+-||.-+. ......|.++|+++.+.-.-...
T Consensus 164 ~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~--~~~~~~l~~~~l~~g~~~~l~~~ 241 (430)
T PRK00178 164 RILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSF--EQKRPRIFVQNLDTGRREQITNF 241 (430)
T ss_pred eEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEc--CCCCCEEEEEECCCCCEEEccCC
Confidence 5566654332 2 3 899999764321 1111111223345677776665321 11135799999987643222223
Q ss_pred CCceeEEEecc-CCeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCc
Q 000428 111 SEQVVFWKWIS-PKMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185 (1520)
Q Consensus 111 ~e~vvfWkWis-~~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~ 185 (1520)
...+..-.|-. .+.|++.+. +.+|.|++++. ...++.. +. .-..+...++|++|++.+.=.
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~~----~~~~~~~~spDg~~i~f~s~~-------- 307 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-QLSRVTN-HP----AIDTEPFWGKDGRTLYFTSDR-------- 307 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-CeEEccc-CC----CCcCCeEECCCCCEEEEEECC--------
Confidence 33344456753 356777653 36899988642 2333332 11 123346778999998877421
Q ss_pred cccceEEEeeccc--c-ccccc-chhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 186 LVKGNMQLFSVDQ--Q-RSQAL-EAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 186 ~i~G~mQLyS~er--~-~sQ~i-eghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
.|..|+|..+- + ..++. .|+..+...+. ...+.++|..+.... ..|.++++..
T Consensus 308 --~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~S-----pdg~~i~~~~~~~~~----~~l~~~dl~t 364 (430)
T PRK00178 308 --GGKPQIYKVNVNGGRAERVTFVGNYNARPRLS-----ADGKTLVMVHRQDGN----FHVAAQDLQR 364 (430)
T ss_pred --CCCceEEEEECCCCCEEEeecCCCCccceEEC-----CCCCEEEEEEccCCc----eEEEEEECCC
Confidence 34567776542 2 22221 23222222222 234567777664332 5688888754
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.53 E-value=2.1 Score=55.37 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=29.6
Q ss_pred hCChhHHH---HHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 000428 1116 VEEDAVWS---QVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDAD 1162 (1520)
Q Consensus 1116 ~~~~eVw~---~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~ 1162 (1520)
+..|..|- .+|..+...|-+++|+.-|.+ +.....||.|....|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Er---lemw~~vi~CY~~lg 438 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFER---LEMWDPVILCYLLLG 438 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHh---HHHHHHHHHHHHHhc
Confidence 45777774 678888888899999999988 333344444444443
No 160
>PTZ00421 coronin; Provisional
Probab=91.46 E-value=31 Score=44.09 Aligned_cols=242 Identities=12% Similarity=0.187 Sum_probs=130.3
Q ss_pred cccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccc-----ccCCceeEEEec--cCCeEEEEe-cCcEEEEeccCC
Q 000428 70 SALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSH-----QMSEQVVFWKWI--SPKMLGVVT-QTSVYHWSIEGD 141 (1520)
Q Consensus 70 sAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~-----~~~e~vvfWkWi--s~~~l~lVT-~~aVyHW~i~~~ 141 (1520)
+-++.++.+.+|+--. ..|. .-|+.+...-|+..- --..+|.--.|- +.+.|+-.+ +..|..|++...
T Consensus 33 ~~~~~~n~~~~a~~w~---~~gg-~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQ---QLGS-TAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred CCcEeECCceEEEEEe---cCCc-eEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 5567777777777421 1133 456666655554430 113568888886 345565554 467899999532
Q ss_pred ------CCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccc-cccccchhhccceee
Q 000428 142 ------SEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ-RSQALEAHAASFAQF 214 (1520)
Q Consensus 142 ------~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~-~sQ~ieghaa~F~~~ 214 (1520)
..|...+.-|. ..|..-..+++....++.|- ..|.+.+|.++++ ..+.++||......+
T Consensus 109 ~~~~~~~~~l~~L~gH~----~~V~~l~f~P~~~~iLaSgs----------~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 109 GLTQNISDPIVHLQGHT----KKVGIVSFHPSAMNVLASAG----------ADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred ccccccCcceEEecCCC----CcEEEEEeCcCCCCEEEEEe----------CCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 23444444332 23545555666555555552 4789999999876 445678887765555
Q ss_pred ecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEE--e--
Q 000428 215 KVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVI--T-- 290 (1520)
Q Consensus 215 ~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyvi--T-- 290 (1520)
...- ..++|+.+.+ . ++++|.++... .+. ..+.... ..-+.....+...+.|+.+ +
T Consensus 175 a~sp---dG~lLatgs~--D-----g~IrIwD~rsg--~~v-----~tl~~H~---~~~~~~~~w~~~~~~ivt~G~s~s 234 (493)
T PTZ00421 175 EWNL---DGSLLCTTSK--D-----KKLNIIDPRDG--TIV-----SSVEAHA---SAKSQRCLWAKRKDLIITLGCSKS 234 (493)
T ss_pred EEEC---CCCEEEEecC--C-----CEEEEEECCCC--cEE-----EEEecCC---CCcceEEEEcCCCCeEEEEecCCC
Confidence 4421 2335555433 2 57899887542 111 0111000 0001122333444444432 1
Q ss_pred ccceEEEEeccchhhhh-hcccCCC-ceEEeeccCCCCcEEEE-cC-CCcEEEEEeecCccccc
Q 000428 291 KLGLLFVYDLETAAAVY-RNRISPD-PIFLTSEASSLGGFYAI-NR-RGQVLLATVNEATIVPF 350 (1520)
Q Consensus 291 K~G~l~lyDl~tg~~i~-~~rIs~~-~iF~~~~~~~~~Gi~~V-n~-~GqVl~v~i~~~~ivpy 350 (1520)
..|.|.+||+.++...+ ...+... .+++... +..+.++.+ .+ +|.|....+....++..
T Consensus 235 ~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 235 QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-DEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-cCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 35899999998765332 2222222 3333333 333445444 33 78888888888876654
No 161
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.42 E-value=16 Score=45.89 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEec-cCCeE
Q 000428 49 SVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWI-SPKML 125 (1520)
Q Consensus 49 ~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWi-s~~~l 125 (1520)
++.+.|....+. +++-+-..-+...+|..+-||.=.. ......|.++|+++.+.-.-..++....-=.|- +.+.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~--~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSF--ENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEe--cCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 888888654331 2333333345667788776665321 111356888999876532212222222222454 33457
Q ss_pred EEEecC----cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccc--c
Q 000428 126 GVVTQT----SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ--Q 199 (1520)
Q Consensus 126 ~lVT~~----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er--~ 199 (1520)
+++... .+|.|++++. .+.++.... .-......++|++|++.+.-. .|..|+|.++- +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg-~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~----------~g~~~Iy~~dl~~g 340 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK-ALTRITRHR-----AIDTEPSWHPDGKSLIFTSER----------GGKPQIYRVNLASG 340 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC-CeEECccCC-----CCccceEECCCCCEEEEEECC----------CCCceEEEEECCCC
Confidence 776432 4999998643 344443311 122345668999999887522 35578887653 2
Q ss_pred ccccc--chhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 200 RSQAL--EAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 200 ~sQ~i--eghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
..+.+ +|+...-..+.. ..+.++|+.+.... ..|.+++++.
T Consensus 341 ~~~~Lt~~g~~~~~~~~Sp-----DG~~l~~~~~~~g~----~~I~~~dl~~ 383 (448)
T PRK04792 341 KVSRLTFEGEQNLGGSITP-----DGRSMIMVNRTNGK----FNIARQDLET 383 (448)
T ss_pred CEEEEecCCCCCcCeeECC-----CCCEEEEEEecCCc----eEEEEEECCC
Confidence 22222 443321122222 23466776654322 4566666643
No 162
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.33 E-value=17 Score=49.07 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHH----HHHhcCChhHHHHHHHHHhh--hcCCcchhHHHHHHHHh
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIR----AAEDADVYHDLVRYLLMVRQ--KVKEPKVDSELIYAYAK 1193 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~----~a~~a~~~e~Li~yL~m~r~--~~~ep~id~~lv~~yAk 1193 (1520)
+++-+.|..+.+.|++.+|+..+..++|...-.+++. .....|.++.+.+++..... ...+|.+-......+..
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 4566666667777777788888888777755444332 23335677777777765422 24556655445555566
Q ss_pred hCChhhHHHHhcC-------cC-------cchH-HHHHhhhhccccHHHHHHHHHhhc------C-------HHHHHHHH
Q 000428 1194 IDRLGDIEEFILM-------PN-------VANL-QNVGDRLYDDTLYEAAKIIYAFIS------N-------WAKLAVTL 1245 (1520)
Q Consensus 1194 ~~~l~ele~fl~~-------~N-------~a~v-~~vgd~~~eeg~YeaAk~~y~~~~------N-------~~kLA~~l 1245 (1520)
.|+.++...++.. .. ...+ -..|..++..|+|+.|...+...- + ...++.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 6777776555431 10 0111 113555667777777777666532 1 23457777
Q ss_pred HHhcCHHHHHHHHHHh
Q 000428 1246 VKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1246 v~L~~y~~Ave~AkKa 1261 (1520)
...|++++|.....++
T Consensus 502 ~~~G~~~~A~~~~~~a 517 (903)
T PRK04841 502 HCKGELARALAMMQQT 517 (903)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888888888877764
No 163
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=6.4 Score=49.58 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=91.0
Q ss_pred HHHHHHhhccHHHHHHHHHhc----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHH-HHHHHHhhCChhh
Q 000428 1125 VAKAQLREGLVSDAIESFIRA----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSE-LIYAYAKIDRLGD 1199 (1520)
Q Consensus 1125 lgka~l~~~~v~eAI~~Yika----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~-lv~~yAk~~~l~e 1199 (1520)
+|.+-.......-|+.+|-++ +|.+.+.+.-....+.+++.+.+..-..+++..++-+.|-- +..++++
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r------ 303 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR------ 303 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH------
Confidence 333333333444455555444 33333444444444556666666555556666666555554 3333332
Q ss_pred HHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhC--ChhhHHHHHHHHhcc
Q 000428 1200 IEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKAN--SAKTWKEVCFACVDA 1277 (1520)
Q Consensus 1200 le~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~--~~k~wk~v~~acv~~ 1277 (1520)
+|..+...|+|+.|+..|....--.+=..++-++++.+++...+...- +|+. +
T Consensus 304 ---------------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~----------A 358 (539)
T KOG0548|consen 304 ---------------LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK----------A 358 (539)
T ss_pred ---------------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH----------H
Confidence 455566669999999999986655555677777888887776655411 2211 1
Q ss_pred hhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1278 EEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1278 ~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
...+.+| ..|-+.|+|.++|..|.+++.....
T Consensus 359 ---~e~r~kG--------------ne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 359 ---EEEREKG--------------NEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred ---HHHHHHH--------------HHHHhccCHHHHHHHHHHHHhcCCc
Confidence 1122233 6778899999999999998765544
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.12 E-value=0.33 Score=43.81 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=44.7
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhc-CHHHHHHHHHHhC
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLK-QFQGAVDAARKAN 1262 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~-~y~~Ave~AkKa~ 1262 (1520)
+...|..++..|+|+.|...|+..- -|..+|.||.++| +|.+|++.++++-
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4779999999999999999999654 5677899999999 7999999999853
No 165
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.06 E-value=19 Score=43.75 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=97.5
Q ss_pred cCeeEEEEecCCC-C-eEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccccc
Q 000428 35 SDKYICVRETAPQ-N-SVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQM 110 (1520)
Q Consensus 35 Sdk~icvre~~~~-~-~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~ 110 (1520)
+++++.+++..++ . .+.+.|....+. .+.-+-..-+...+|..+-||.-.. ..+...|.++|+++.....-..+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~--~~~~~~i~v~d~~~g~~~~~~~~ 232 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSF--ESGKPEIYVQDLATGQREKVASF 232 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEeecC
Confidence 4677777766422 3 788888742221 1111111234456777777776432 12246799999988643322223
Q ss_pred CCceeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCc
Q 000428 111 SEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185 (1520)
Q Consensus 111 ~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~ 185 (1520)
...+..=.|-.+ +.|++.+. ..+|.|++++. ...++.. +... ...-..++|++|++.++-.
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~~~~l~~-~~~~----~~~~~~s~dg~~l~~~s~~-------- 298 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-QLTRLTN-GPGI----DTEPSWSPDGKSIAFTSDR-------- 298 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-CEEECCC-CCCC----CCCEEECCCCCEEEEEECC--------
Confidence 333333345433 45666543 36999998642 2233322 2111 1122457899999887632
Q ss_pred cccceEEEeecccc--cccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 186 LVKGNMQLFSVDQQ--RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 186 ~i~G~mQLyS~er~--~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
.|..|+|.++.. ..+.+..+........+ +...+.++|+.+.... ..+.+++++.
T Consensus 299 --~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~---spdg~~i~~~~~~~~~----~~i~~~d~~~ 355 (417)
T TIGR02800 299 --GGSPQIYMMDADGGEVRRLTFRGGYNASPSW---SPDGDLIAFVHREGGG----FNIAVMDLDG 355 (417)
T ss_pred --CCCceEEEEECCCCCEEEeecCCCCccCeEE---CCCCCEEEEEEccCCc----eEEEEEeCCC
Confidence 234477765532 22333322211111111 1234577777664422 5788888754
No 166
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=41 Score=40.19 Aligned_cols=264 Identities=16% Similarity=0.173 Sum_probs=142.0
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhc-CCcchHH----HHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA-DDATQFL----DVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYA 1192 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika-~d~s~~~----evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yA 1192 (1520)
+..-.|.||-.|-..-.+.+|-++|..- .+.-.++ =-....+.++-|-+-++-+.| ...+|.+-+..+..-|
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~---~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL---LLDNPALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH---hcCCHHHHHHHHHHHH
Confidence 4455678888887766788888888653 2221222 223456677778777777776 2233555554332221
Q ss_pred ----hhCChhhHHHHh---cCcCcchH-HHHHhhhhccccHHHHHHHHHhhc---CH-----HHHHHHHHHhcCHHHHHH
Q 000428 1193 ----KIDRLGDIEEFI---LMPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS---NW-----AKLAVTLVKLKQFQGAVD 1256 (1520)
Q Consensus 1193 ----k~~~l~ele~fl---~~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~---N~-----~kLA~~lv~L~~y~~Ave 1256 (1520)
..++++--...+ -+.|.+++ ...|=.++.+|.||+|..=|+..- -| ..+|.|+-+-|+|..|.+
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 124444333333 34588887 568999999999999999998654 22 356999999999999998
Q ss_pred HHHHhCChhhHH--HHHH-HHhcchhhhHHHhhccccccccccHHHHH----HHHHhcCCHHHHHHHH-HhhcCcc-ccc
Q 000428 1257 AARKANSAKTWK--EVCF-ACVDAEEFRLAQICGLNIIVQVDDLEEVS----EYYQNRGYFNELISLM-ESGLGLE-RAH 1327 (1520)
Q Consensus 1257 ~AkKa~~~k~wk--~v~~-acv~~~e~rLA~~~gl~li~~~d~l~elv----~~Ye~~G~f~eLI~Ll-e~gl~le-rAh 1327 (1520)
.-.+--+..+-. +..- +-.+. -.+...|=.+.+|-+-+-+-. .-|-+.|+|+-+-.-+ ..-..-| .+.
T Consensus 200 ~iSEIieRG~r~HPElgIGm~teg---iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elD 276 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEG---IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELD 276 (459)
T ss_pred HHHHHHHhhhhcCCccCccceecc---CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCC
Confidence 766532221110 0000 00000 001112212222222221111 1233456665554333 2221111 111
Q ss_pred cchhHHHHHHHhccChhhhHHHHHHHHHhh-chHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcC
Q 000428 1328 MGIFTELGVLYARYRYEKLMEHIKLFSTRL-NIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHS 1396 (1520)
Q Consensus 1328 ~~~fTeLailyAky~pekLmehlk~y~~~i-Ni~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~ 1396 (1520)
.-.--.+|+--+.-+|..=.+-|. |-=.+ ..| ...+..+.+||++.+-|+-|++++-+|+
T Consensus 277 PvTLHN~Al~n~~~~p~~g~~KLq-FLL~~nPfP--------~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 277 PVTLHNQALMNMDARPTEGFEKLQ-FLLQQNPFP--------PETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred chhhhHHHHhcccCCccccHHHHH-HHHhcCCCC--------hHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 111223455555555443222211 21111 222 4568889999999999999999999993
No 167
>PTZ00420 coronin; Provisional
Probab=91.02 E-value=36 Score=44.27 Aligned_cols=233 Identities=17% Similarity=0.265 Sum_probs=122.3
Q ss_pred cCeeEEEEec-CCCCeEEEEEcCCCCC--ccccccCc-ccc----cccCC-cceeeeeccCCCCCCCcEEEEehhhhcc-
Q 000428 35 SDKYICVRET-APQNSVVIIDMNQPMQ--PLRRPITA-DSA----LMNPN-SRILALKAQLPGTTQDHLQIFNIELKAK- 104 (1520)
Q Consensus 35 Sdk~icvre~-~~~~~v~Ivdl~~~~~--~~r~pi~A-dsA----imnP~-~~iiAlra~~~~~~g~~lQiFnle~k~k- 104 (1520)
|.+|+++-=. .+++.+-+|-+++... +.+. +.+ ..+ -.||. .++||-=+. .+++.||++.+...
T Consensus 37 n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~-L~gH~~~V~~lafsP~~~~lLASgS~-----DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 37 SSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIK-LKGHTSSILDLQFNPCFSEILASGSE-----DLTIRVWEIPHNDES 110 (568)
T ss_pred CCCeEEEEEEcCCCCceeEEEeeecCCCceEEE-EcCCCCCEEEEEEcCCCCCEEEEEeC-----CCeEEEEECCCCCcc
Confidence 4567666443 3444666666665432 1111 111 122 24675 566666543 56899999986421
Q ss_pred ----------ccccccCCceeEEEeccCCeEEEEe---cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeE
Q 000428 105 ----------IKSHQMSEQVVFWKWISPKMLGVVT---QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWL 171 (1520)
Q Consensus 105 ----------lks~~~~e~vvfWkWis~~~l~lVT---~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~ 171 (1520)
+..| ...|.--.|-.....-++| +..|-.|++..... ++... .+..|.+-..+++++++
T Consensus 111 ~~~i~~p~~~L~gH--~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~---~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 111 VKEIKDPQCILKGH--KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN---MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred ccccccceEEeecC--CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe---cCCcEEEEEECCCCCEE
Confidence 2333 3568888886544333333 56899999964322 22211 12457777778888877
Q ss_pred EEEeccCCCCCCCccccceEEEeecccc-cccccchhhcccee--eecCCC-CCCceEEEEEEecCCCCcccceEEEEec
Q 000428 172 VLIGIAPGSAERPQLVKGNMQLFSVDQQ-RSQALEAHAASFAQ--FKVPGN-ENPSVLISFATKSFNAGQVTSKLHVIEL 247 (1520)
Q Consensus 172 ~l~Gi~~~~~~~~~~i~G~mQLyS~er~-~sQ~ieghaa~F~~--~~~~g~-~~~~~l~~fa~r~~~~~~~~~kL~i~Ei 247 (1520)
+..+ -.|.+.+|....+ ..+.++||.+.-.. +-+.|. +....|++.+.-+ .+ ...++|-++
T Consensus 183 at~s-----------~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~-~~---~R~VkLWDl 247 (568)
T PTZ00420 183 SGTC-----------VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK-NN---MREMKLWDL 247 (568)
T ss_pred EEEe-----------cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC-CC---ccEEEEEEC
Confidence 5433 3688999998765 34567899764211 111121 1222333333221 11 135777777
Q ss_pred CCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEe-ccceEEEEeccchhh
Q 000428 248 GAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVIT-KLGLLFVYDLETAAA 305 (1520)
Q Consensus 248 ~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviT-K~G~l~lyDl~tg~~ 305 (1520)
... +.|. ..+++.-. --++.-...+.-|++|+.. ..|-|++||+.+|.+
T Consensus 248 r~~-~~pl---~~~~ld~~-----~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 248 KNT-TSAL---VTMSIDNA-----SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred CCC-CCce---EEEEecCC-----ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 532 2221 11111000 0011111223368888776 578899999998853
No 168
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.94 E-value=2.3 Score=43.17 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=43.6
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK 1177 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~ 1177 (1520)
..++++|+.+|..+...|+..+|+..|-++ .+++.+...-.+....|+++.-+++++++-+.
T Consensus 48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788888888888888888888877766 33444555566666777777777777765543
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.69 E-value=0.97 Score=53.20 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=59.3
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCcHHHHHHH------HH-------hhhhHHHHHHHHHH-----hCChhHHHHHHHHHHh
Q 000428 1070 GEVAVEAQLYEEAFAIFKKFNLNVQAVNVL------LD-------NIRSIERAVEFAFR-----VEEDAVWSQVAKAQLR 1131 (1520)
Q Consensus 1070 A~ia~e~~L~EEA~~LYkK~~~~~~Ai~vL------i~-------~~~~~~~A~e~Aek-----~~~~eVw~~lgka~l~ 1131 (1520)
+.-+.+.+.|+||+..|.+ ||++- .. ..+.+++|++=++. -+-..-|.+||.||+.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~------AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTE------AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHhhhHHHHHHHHHH------HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 3344478888888888877 44332 00 11224444444432 1235689999999999
Q ss_pred hccHHHHHHHHHhc--CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcc
Q 000428 1132 EGLVSDAIESFIRA--DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPK 1182 (1520)
Q Consensus 1132 ~~~v~eAI~~Yika--~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~ 1182 (1520)
.|+.++||++|-|+ -||++ +....=|.-||+..++|.
T Consensus 162 ~gk~~~A~~aykKaLeldP~N--------------e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDN--------------ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCc--------------HHHHHHHHHHHHHhcCCC
Confidence 99999999999998 44444 334444555666666665
No 170
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.68 E-value=23 Score=42.31 Aligned_cols=236 Identities=16% Similarity=0.236 Sum_probs=136.8
Q ss_pred ccCCcceeeeeccCCCCC----CCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCCCCccch-
Q 000428 73 MNPNSRILALKAQLPGTT----QDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKM- 147 (1520)
Q Consensus 73 mnP~~~iiAlra~~~~~~----g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P~k~- 147 (1520)
|==..|++||-|- |.+ ...|=|||=..+.-+....|+.+|.=-+ ++.+.|++|+++.+|.|+... .|.++
T Consensus 54 MLfR~N~laLVGG--g~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~-l~r~riVvvl~~~I~VytF~~--n~k~l~ 128 (346)
T KOG2111|consen 54 MLFRSNYLALVGG--GSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVK-LRRDRIVVVLENKIYVYTFPD--NPKLLH 128 (346)
T ss_pred HhhhhceEEEecC--CCCCCCCCceEEEEecccCcEEEEEEeccceeeEE-EcCCeEEEEecCeEEEEEcCC--Chhhee
Confidence 4445799999861 110 2359999955556678888888875443 468899999999999998853 34443
Q ss_pred -hhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEe---ecccccccccchhhccceeeecCCCCCCc
Q 000428 148 -FDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLF---SVDQQRSQALEAHAASFAQFKVPGNENPS 223 (1520)
Q Consensus 148 -f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLy---S~er~~sQ~ieghaa~F~~~~~~g~~~~~ 223 (1520)
||-.++=.| .-.+....+..-++. +|+=.|.+|+- |...+-...|.+|-..-+-+.+ ..+.
T Consensus 129 ~~et~~NPkG--lC~~~~~~~k~~Laf----------Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~L---n~~G 193 (346)
T KOG2111|consen 129 VIETRSNPKG--LCSLCPTSNKSLLAF----------PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVAL---NLQG 193 (346)
T ss_pred eeecccCCCc--eEeecCCCCceEEEc----------CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEE---cCCc
Confidence 333222222 222222222222221 23445888864 4455555889999776665544 2345
Q ss_pred eEEEEEEecCCCCcccceEEEEecCCCCCCC--CcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEecc
Q 000428 224 VLISFATKSFNAGQVTSKLHVIELGAQPGKP--SFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLE 301 (1520)
Q Consensus 224 ~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~--~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~ 301 (1520)
++++-|.-+.+ =++|.+- ..|.. -|+ |.+| .++=| .|-.|+--..+-+-++.|-||+|-++
T Consensus 194 t~vATaStkGT------LIRIFdt--~~g~~l~E~R-RG~d------~A~iy--~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 194 TLVATASTKGT------LIRIFDT--EDGTLLQELR-RGVD------RADIY--CIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred cEEEEeccCcE------EEEEEEc--CCCcEeeeee-cCCc------hheEE--EEEeCCCccEEEEEcCCCeEEEEEee
Confidence 56666654322 2444432 11211 111 1111 01111 34445555678889999999999876
Q ss_pred chhhh---------h---------------hcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecC
Q 000428 302 TAAAV---------Y---------------RNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEA 345 (1520)
Q Consensus 302 tg~~i---------~---------------~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~ 345 (1520)
....= . +-++.+.+.++.+--+++.-|++|-.+|--.....|+.
T Consensus 257 ~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 257 DTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 53211 1 12344556777766666677888888888887777765
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.62 E-value=0.3 Score=45.30 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc---------------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS---------------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~---------------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
..+|..+...|+|+.|...|+..- .+..+|.||...|++++|++..+||
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666677666666665443 4566799999999999999999985
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=90.52 E-value=1.7 Score=38.47 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLM 1173 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m 1173 (1520)
.+.+|+.+|..+...++.++|++.|-++ .+++.+.....+....++++.-.+++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 33 NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3477888888888888888888887665 2222333444445555555555555553
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.52 E-value=3.4 Score=44.49 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhC-ChhHHHHHHHHHHhhccHHHHHHHHHhc--
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVE-EDAVWSQVAKAQLREGLVSDAIESFIRA-- 1145 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~-~~eVw~~lgka~l~~~~v~eAI~~Yika-- 1145 (1520)
.|..+...|.+++|...|++ |+. ...... .+.+|+.+|..+...|+.++|+.+|.++
T Consensus 41 lg~~~~~~g~~~~A~~~~~~------al~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEE------ALK--------------LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHH------HHH--------------HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35556667777777777776 332 221111 2468999999999999999999999887
Q ss_pred ---CCcchHHHHHHHHHhcCC
Q 000428 1146 ---DDATQFLDVIRAAEDADV 1163 (1520)
Q Consensus 1146 ---~d~s~~~evi~~a~~a~~ 1163 (1520)
+++..+.....+....++
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCC
Confidence 333444444444444443
No 174
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.33 E-value=19 Score=44.73 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=97.0
Q ss_pred CcEEEEehhhhccccccccCCceeEEEec-cCCeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCC
Q 000428 92 DHLQIFNIELKAKIKSHQMSEQVVFWKWI-SPKMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDP 166 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~e~vvfWkWi-s~~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~ 166 (1520)
..|.++|.+.+..-.-..-++.+..=+|- +-+.|+.++. ..+|.|++.+. .+..+.+ ..+ -+.....++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g-~~~~l~~----~~g-~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG-RRRVVAN----FKG-SNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC-CEEEeec----CCC-CccceEECC
Confidence 56888887654322222345677777887 4467888874 35999999643 2333322 111 234778999
Q ss_pred CCCeEEEEeccCCCCCCCccccceEEEeeccc--ccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEE
Q 000428 167 TEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ--QRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHV 244 (1520)
Q Consensus 167 ~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er--~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i 244 (1520)
|++|+++..-. .|..+||.++- +..+.+..|.+.-.... -+....-++|+... .|. ..+.+
T Consensus 250 DG~~la~~~~~----------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~---wSpDG~~l~f~s~~-~g~---~~Iy~ 312 (427)
T PRK02889 250 DGRTLAVALSR----------DGNSQIYTVNADGSGLRRLTQSSGIDTEPF---FSPDGRSIYFTSDR-GGA---PQIYR 312 (427)
T ss_pred CCCEEEEEEcc----------CCCceEEEEECCCCCcEECCCCCCCCcCeE---EcCCCCEEEEEecC-CCC---cEEEE
Confidence 99999886522 46688887653 23333433433211111 12233455565432 221 45666
Q ss_pred EecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccc---eEEEEeccchhh
Q 000428 245 IELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLG---LLFVYDLETAAA 305 (1520)
Q Consensus 245 ~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G---~l~lyDl~tg~~ 305 (1520)
++++. +.+ ..+.+. ..+.....+|+.=..|+..+..| -|++||+.||..
T Consensus 313 ~~~~~--g~~------~~lt~~----g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 313 MPASG--GAA------QRVTFT----GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EECCC--Cce------EEEecC----CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 66532 211 112222 22333456776544555555443 699999999863
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.26 E-value=27 Score=41.32 Aligned_cols=183 Identities=11% Similarity=0.159 Sum_probs=98.8
Q ss_pred CCcEEEEehhhhc---cccccccCCceeEEEec-cCCeEEEEe--cCcEEEEeccCCCCccchhhcccCCCCCeEEEeee
Q 000428 91 QDHLQIFNIELKA---KIKSHQMSEQVVFWKWI-SPKMLGVVT--QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKC 164 (1520)
Q Consensus 91 g~~lQiFnle~k~---klks~~~~e~vvfWkWi-s~~~l~lVT--~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~ 164 (1520)
+..+.+|++++.. .++.........+-.+= +.+.|.+.+ ...|+-|+++++..- +.-.+.+...+ .-.-..
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~~~~~--p~~i~~ 87 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESPLPGS--PTHIST 87 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeecCCCC--ceEEEE
Confidence 6779999997532 33433333333333332 223455554 478888888632211 11122222211 224457
Q ss_pred CCCCCeEEEEeccCCCCCCCccccceEEEeecccc-----cccccchhhccceeeecCCCCCCceEEEEEEecCCCCccc
Q 000428 165 DPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ-----RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVT 239 (1520)
Q Consensus 165 ~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~-----~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~ 239 (1520)
+++++|+...+-. .|.+-.|.++.. ..+.++|+.++.. +.+ .| ..+.+..+.. ..
T Consensus 88 ~~~g~~l~v~~~~----------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~-~~~--~p-~g~~l~v~~~--~~---- 147 (330)
T PRK11028 88 DHQGRFLFSASYN----------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHS-ANI--DP-DNRTLWVPCL--KE---- 147 (330)
T ss_pred CCCCCEEEEEEcC----------CCeEEEEEECCCCCCCCceeeccCCCcccE-eEe--CC-CCCEEEEeeC--CC----
Confidence 8999999888633 477778877531 2233444322221 111 11 1122222221 11
Q ss_pred ceEEEEecCCCCCCCCccc-ccccccCCCCCCCCcceeEEeccccceEEEEec-cceEEEEeccc
Q 000428 240 SKLHVIELGAQPGKPSFTK-KQADLFFPPDFADDFPVAMQISHKYGLIYVITK-LGLLFVYDLET 302 (1520)
Q Consensus 240 ~kL~i~Ei~~~~~~~~f~k-k~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK-~G~l~lyDl~t 302 (1520)
.++.|..+.+ .|. +.. ....+.+|+ ++-|-.|.+++.-..+|+.+. .|-|.+||+..
T Consensus 148 ~~v~v~d~~~-~g~--l~~~~~~~~~~~~---g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 148 DRIRLFTLSD-DGH--LVAQEPAEVTTVE---GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CEEEEEEECC-CCc--ccccCCCceecCC---CCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 5789998864 221 111 112233343 467999999998899999987 99999999983
No 176
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=41 Score=44.34 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=91.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCc-chHHHHHhhhhccccHHHHHHH
Q 000428 1153 DVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNV-ANLQNVGDRLYDDTLYEAAKII 1231 (1520)
Q Consensus 1153 evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~-a~v~~vgd~~~eeg~YeaAk~~ 1231 (1520)
+++..+-.-|+...-.+.=+.. +.-|.++=.-=+.++|+.+++.+||.|=++... -.+.--=+.|.+.|.-++|+..
T Consensus 689 dTv~~li~~g~~k~a~ql~~~F--kipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDF--KIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhc--CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhh
Confidence 3344444444444333333321 233444444457788889999999999766442 2334455679999999999999
Q ss_pred HHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhh
Q 000428 1232 YAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFR 1281 (1520)
Q Consensus 1232 y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~r 1281 (1520)
+...+.+...+-.|++.|++.+|++.|-+.++....+++..-|-...+-.
T Consensus 767 iprv~~l~ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~~~~~~~~~~~ 816 (829)
T KOG2280|consen 767 IPRVGGLQEKVKAYLRVGDVKEAADLAAEHRDGAELSEVLSKCTGAPDGA 816 (829)
T ss_pred hhccCChHHHHHHHHHhccHHHHHHHHHHhcChHHHHHHHHhcCCCCccc
Confidence 99999999899999999999999999999999999999877766544433
No 177
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.89 E-value=52 Score=40.24 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=48.0
Q ss_pred cceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEe
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATV 342 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i 342 (1520)
-|.||+.+..|+||.+|..||+.+.+.++....++. ++--..+.+++.+++|.|+.+..
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s-~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS-EPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee-CCEEECCEEEEEeCCceEEEEeC
Confidence 588999999999999999999999999997666554 33233567888899999988753
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=89.82 E-value=9 Score=47.94 Aligned_cols=139 Identities=18% Similarity=0.129 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH--
Q 000428 1077 QLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL-- 1152 (1520)
Q Consensus 1077 ~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~-- 1152 (1520)
..|-.|..-|.- +.+++|...|-+= ++..-+|+-.|.-.|..++..+++++|++.|-|+ .+|....
T Consensus 308 a~YG~A~~~~~~-~~~d~A~~~l~~L---------~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 308 AQYGRALQTYLA-GQYDEALKLLQPL---------IAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHH---------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH
Confidence 345566666654 6666666655441 3444467777777777778899999999999998 6666544
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHhh-hcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHH
Q 000428 1153 -DVIRAAEDADVYHDLVRYLLMVRQ-KVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKI 1230 (1520)
Q Consensus 1153 -evi~~a~~a~~~e~Li~yL~m~r~-~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~ 1230 (1520)
..-.+....|+|.+-|++|+..-+ ...+|..=.-|..+|+++|+-.+. ..+-++.++-.|.++.|++
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a-----------~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA-----------LLARAEGYALAGRLEQAII 446 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH-----------HHHHHHHHHhCCCHHHHHH
Confidence 444677788999999999985333 245555555588888877765443 3556778888888888888
Q ss_pred HHHhhc
Q 000428 1231 IYAFIS 1236 (1520)
Q Consensus 1231 ~y~~~~ 1236 (1520)
+.+...
T Consensus 447 ~l~~A~ 452 (484)
T COG4783 447 FLMRAS 452 (484)
T ss_pred HHHHHH
Confidence 776543
No 179
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=89.79 E-value=4.4 Score=45.19 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHH-HhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHH
Q 000428 1298 EEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVL-YARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELT 1376 (1520)
Q Consensus 1298 ~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLail-yAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~v 1376 (1520)
..+...|...|++++|+..|++++.+...+..++..+|.+ |..=+....-+..+.+...+... +.+...|--+-
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-----P~~~~al~~LA 151 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-----ANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-----CCChhHHHHHH
Confidence 4666889999999999999999999998888888888874 33322221234444555555444 55667788888
Q ss_pred HHHHhhccHHHHHHHHHh
Q 000428 1377 YLYIQYDEFDNAATTIMN 1394 (1520)
Q Consensus 1377 fLy~~~~e~d~A~~~mi~ 1394 (1520)
+.+.+.|+|++|+...-.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 152 SDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999965544
No 180
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=89.58 E-value=2.9 Score=40.80 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhc--CCcc------hHHHHHHHHHhcCChhHHHHHHHHHhh
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRA--DDAT------QFLDVIRAAEDADVYHDLVRYLLMVRQ 1176 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s------~~~evi~~a~~a~~~e~Li~yL~m~r~ 1176 (1520)
+++||.+|..+...|+.++|+..|.++ .+|+ .+.....++...+++++-++++..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 578888999999989999999988665 2332 233456666667777777777775443
No 181
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=89.43 E-value=0.6 Score=47.49 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=59.9
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcC
Q 000428 1330 IFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHS 1396 (1520)
Q Consensus 1330 ~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~ 1396 (1520)
++|-|-.+|..++|..+-+.++. .+..++..+-+.-++.+.|.|++.+|...|.+++|+.+..+-.
T Consensus 1 VDTaLlk~Yl~~~~~~l~~llr~-~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 1 VDTALLKCYLETNPSLLGPLLRL-PNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CcHHHHHHHHHhCHHHHHHHHcc-CCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHh
Confidence 45778999999999999999998 6888999888888899999999999999999999998888763
No 182
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=43 Score=39.96 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=141.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcC--cCcchHHHHHhhhhccccHHHH
Q 000428 1151 FLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILM--PNVANLQNVGDRLYDDTLYEAA 1228 (1520)
Q Consensus 1151 ~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~--~N~a~v~~vgd~~~eeg~YeaA 1228 (1520)
|..|++..-+...+++-|+.|+ .+... .|.+.+.-+|-+++-.++|+.|
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~-----------------------------s~~Er~p~~rAgLSlLgyCYY~~Q~f~~A 63 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLG-----------------------------SELERSPRSRAGLSLLGYCYYRLQEFALA 63 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHH-----------------------------HHHhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777 22221 2455666677777777888888
Q ss_pred HHHHHhhc-CHHHH-------HHHHHHhcCHHHHHHHHHHhCC-hhhHHHH--HHHHhc--chhhhHHHhhc--cccccc
Q 000428 1229 KIIYAFIS-NWAKL-------AVTLVKLKQFQGAVDAARKANS-AKTWKEV--CFACVD--AEEFRLAQICG--LNIIVQ 1293 (1520)
Q Consensus 1229 k~~y~~~~-N~~kL-------A~~lv~L~~y~~Ave~AkKa~~-~k~wk~v--~~acv~--~~e~rLA~~~g--l~li~~ 1293 (1520)
-.+|++.+ |+-+. |.-+-+-+.|..|...++.-.+ +..-.++ .++++. ++++-=+++.- ++=-..
T Consensus 64 A~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~ 143 (459)
T KOG4340|consen 64 AECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENE 143 (459)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCc
Confidence 88887765 33222 4455556777777777776665 3333332 122222 22222111100 000122
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhh-----chH--------
Q 000428 1294 VDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRL-----NIP-------- 1360 (1520)
Q Consensus 1294 ~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~i-----Ni~-------- 1360 (1520)
+|-+-.....--+.|.++++++-|..++....=..+.-. .++.|.|.....-..||..+.-| |.|
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAY--niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAY--NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHH--HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 344434444445689999999999999876665566444 56779999998888888866555 111
Q ss_pred ------------HHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcch---h-hHHHHHhh-hhhHHHHHHHH
Q 000428 1361 ------------KLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHM---Q-FKDVAVKV-ANVELYYKAVH 1423 (1520)
Q Consensus 1361 ------------K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~---~-fk~ii~kv-an~elyYkai~ 1423 (1520)
++-...- -+.+.=-.-++.+.++++.|-..+..-||.+...- . -.--+..+ ++.---.+-+.
T Consensus 222 egiDvrsvgNt~~lh~Sal-~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSAL-VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQ 300 (459)
T ss_pred ccCchhcccchHHHHHHHH-HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHH
Confidence 1111111 00111112346677899999898888887764221 1 11222222 11111456788
Q ss_pred HHHhhCc
Q 000428 1424 FYLQEHP 1430 (1520)
Q Consensus 1424 FyL~~~P 1430 (1520)
|.|+..|
T Consensus 301 FLL~~nP 307 (459)
T KOG4340|consen 301 FLLQQNP 307 (459)
T ss_pred HHHhcCC
Confidence 9998877
No 183
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=89 Score=41.46 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=144.1
Q ss_pred CChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHH
Q 000428 1064 FDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFI 1143 (1520)
Q Consensus 1064 yd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yi 1143 (1520)
..-.+||+.|.+.|+.+.|..+-..--+=.+=+.+|++ +++.+.|+.=|-++.++++=+++--+.-. ++.+.+|-
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~-m~~~~~AL~kaies~d~~Li~~Vllhlk~----~~~~s~l~ 582 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLK-MKDSSLALKKAIESGDTDLIIQVLLHLKN----KLNRSSLF 582 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhc-cchHHHHHHHHHhcCCchhHHHHHHHHHH----HHHHHHHH
Confidence 34567899999999999999988764444444555554 45788999999999999987775554422 23333433
Q ss_pred hcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHH-hcC--------cCcchHHH
Q 000428 1144 RADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEF-ILM--------PNVANLQN 1214 (1520)
Q Consensus 1144 ka~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~f-l~~--------~N~a~v~~ 1214 (1520)
+.-. ++|..+-=|.+-+|+..+.. |--.|...++...+-.| +++ .-.+++..
T Consensus 583 ~~l~--------------~~p~a~~lY~~~~r~~~~~~-----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~ 643 (829)
T KOG2280|consen 583 MTLR--------------NQPLALSLYRQFMRHQDRAT-----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT 643 (829)
T ss_pred HHHH--------------hchhhhHHHHHHHHhhchhh-----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH
Confidence 3211 44555555555555421110 22223333333333333 111 12223333
Q ss_pred HHhhhhcccc----------HHHHHHHHHhhc-----CHHHH-----HHHHHHhcCHHHHHHHHHHhCChh--hHHHHHH
Q 000428 1215 VGDRLYDDTL----------YEAAKIIYAFIS-----NWAKL-----AVTLVKLKQFQGAVDAARKANSAK--TWKEVCF 1272 (1520)
Q Consensus 1215 vgd~~~eeg~----------YeaAk~~y~~~~-----N~~kL-----A~~lv~L~~y~~Ave~AkKa~~~k--~wk~v~~ 1272 (1520)
.++.|.+... -.....+....+ +|.-| .+++...|+-++|.++.++..=|+ .|=
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~w---- 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWW---- 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHH----
Confidence 3333332222 111111121111 23333 788889999999999999977332 220
Q ss_pred HHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccch--hHHHHHHHhccChhhhHHHH
Q 000428 1273 ACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGI--FTELGVLYARYRYEKLMEHI 1350 (1520)
Q Consensus 1273 acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~--fTeLailyAky~pekLmehl 1350 (1520)
.++ ....+.++|+||..+=+.- +--+|. |-|-+. +.++++|..
T Consensus 720 -------Lk~-------------------~aLa~~~kweeLekfAksk----ksPIGy~PFVe~c~-----~~~n~~EA~ 764 (829)
T KOG2280|consen 720 -------LKL-------------------TALADIKKWEELEKFAKSK----KSPIGYLPFVEACL-----KQGNKDEAK 764 (829)
T ss_pred -------HHH-------------------HHHHhhhhHHHHHHHHhcc----CCCCCchhHHHHHH-----hcccHHHHh
Confidence 111 3335577888877765432 111331 222222 123333332
Q ss_pred HHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhh
Q 000428 1351 KLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKV 1412 (1520)
Q Consensus 1351 k~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kv 1412 (1520)
.|-.+ |.... |.|-+|...|.+.+|++.-.+|- |-+.-+++..+.
T Consensus 765 -KYipr---------v~~l~---ekv~ay~~~~~~~eAad~A~~~r----d~~~L~ev~~~~ 809 (829)
T KOG2280|consen 765 -KYIPR---------VGGLQ---EKVKAYLRVGDVKEAADLAAEHR----DGAELSEVLSKC 809 (829)
T ss_pred -hhhhc---------cCChH---HHHHHHHHhccHHHHHHHHHHhc----ChHHHHHHHHhc
Confidence 22333 33322 99999999999999999988882 333344555444
No 184
>PRK05137 tolB translocation protein TolB; Provisional
Probab=89.25 E-value=27 Score=43.36 Aligned_cols=231 Identities=11% Similarity=0.147 Sum_probs=117.2
Q ss_pred CeeEEEEecCCC---C-eEEEEEcCCCCCc---cccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccc
Q 000428 36 DKYICVRETAPQ---N-SVVIIDMNQPMQP---LRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSH 108 (1520)
Q Consensus 36 dk~icvre~~~~---~-~v~Ivdl~~~~~~---~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~ 108 (1520)
.|-+.|.+..+. . ++.+.|.. ..++ ++..-..-+.-..|..+-||.-.. ..+...|.++|+++.+.-.--
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~--~~g~~~i~~~dl~~g~~~~l~ 242 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSY--ANGRPRVYLLDLETGQRELVG 242 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEe--cCCCCEEEEEECCCCcEEEee
Confidence 355666655442 2 88899864 3322 222222333445666676666421 112468999999887543222
Q ss_pred ccCCceeEEEeccCC-eEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCC
Q 000428 109 QMSEQVVFWKWISPK-MLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAER 183 (1520)
Q Consensus 109 ~~~e~vvfWkWis~~-~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~ 183 (1520)
.++..+..-.|-.+. .|++.+. ..+|.|++++. .+.++.. ++. ....-..++|++|++...-.
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~Lt~-~~~----~~~~~~~spDG~~i~f~s~~------ 310 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG-TTTRLTD-SPA----IDTSPSYSPDGSQIVFESDR------ 310 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC-ceEEccC-CCC----ccCceeEcCCCCEEEEEECC------
Confidence 344556667786444 5666653 56999998653 2333332 221 12234668999999976422
Q ss_pred CccccceEEEeecc--cccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccc
Q 000428 184 PQLVKGNMQLFSVD--QQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQA 261 (1520)
Q Consensus 184 ~~~i~G~mQLyS~e--r~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~ 261 (1520)
.|..|+|-++ .+..+.+-.+.+...... -++..+.++|..+.... ..+.+++++. +.. +.
T Consensus 311 ----~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~---~SpdG~~ia~~~~~~~~----~~i~~~d~~~---~~~---~~- 372 (435)
T PRK05137 311 ----SGSPQLYVMNADGSNPRRISFGGGRYSTPV---WSPRGDLIAFTKQGGGQ----FSIGVMKPDG---SGE---RI- 372 (435)
T ss_pred ----CCCCeEEEEECCCCCeEEeecCCCcccCeE---ECCCCCEEEEEEcCCCc----eEEEEEECCC---Cce---Ee-
Confidence 3456777443 332233321111111111 12234566776654332 4677777632 111 11
Q ss_pred cccCCCCCCCCcceeEEeccccceEEEEe-cc-----ceEEEEeccchhh
Q 000428 262 DLFFPPDFADDFPVAMQISHKYGLIYVIT-KL-----GLLFVYDLETAAA 305 (1520)
Q Consensus 262 d~~fpp~~~~DFPv~mqvs~k~g~iyviT-K~-----G~l~lyDl~tg~~ 305 (1520)
+. ..... -++.+|+-=..|+..+ .. +-|+++|+.++..
T Consensus 373 -lt--~~~~~---~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 373 -LT--SGFLV---EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -cc--CCCCC---CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 11 11111 2345676555554444 33 2588889876643
No 185
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.08 E-value=40 Score=40.67 Aligned_cols=269 Identities=17% Similarity=0.314 Sum_probs=138.5
Q ss_pred CCCCCCCcccccceeeecCeeEEEEecC-CCCeEEEEEcCCC----CCccccccCcc---cccccCCcceeeeeccCCCC
Q 000428 18 SVGINPQFITFTNVTMESDKYICVRETA-PQNSVVIIDMNQP----MQPLRRPITAD---SALMNPNSRILALKAQLPGT 89 (1520)
Q Consensus 18 ~lGi~~~~i~f~~~t~eSdk~icvre~~-~~~~v~Ivdl~~~----~~~~r~pi~Ad---sAimnP~~~iiAlra~~~~~ 89 (1520)
..|-+|+.+.+.. +.....++.|.. +++.|...++... ....+.|.... +...+|..+-+.+= + -
T Consensus 34 ~~~~~Ps~l~~~~---~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va-n---y 106 (345)
T PF10282_consen 34 AEGENPSWLAVSP---DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA-N---Y 106 (345)
T ss_dssp EESSSECCEEE-T---TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE-E---T
T ss_pred cCCCCCceEEEEe---CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE-E---c
Confidence 3566776665522 444555555554 3447777776653 12334443333 24556666544432 1 1
Q ss_pred CCCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCC
Q 000428 90 TQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEK 169 (1520)
Q Consensus 90 ~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~k 169 (1520)
.+..+-+|+++.--++. -++. .+.|. |. .|.. +|... ...-.-..++|++
T Consensus 107 ~~g~v~v~~l~~~g~l~--------------------~~~~-~~~~~---g~-g~~~--~rq~~---~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLG--------------------EVVQ-TVRHE---GS-GPNP--DRQEG---PHPHQVVFSPDGR 156 (345)
T ss_dssp TTTEEEEEEECTTSEEE--------------------EEEE-EEESE---EE-ESST--TTTSS---TCEEEEEE-TTSS
T ss_pred cCCeEEEEEccCCcccc--------------------eeee-ecccC---CC-CCcc--ccccc---ccceeEEECCCCC
Confidence 15667777765543333 3322 11122 21 2221 33322 2233335689999
Q ss_pred eEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceE-------EEEEEecCCCCcccceE
Q 000428 170 WLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVL-------ISFATKSFNAGQVTSKL 242 (1520)
Q Consensus 170 W~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l-------~~fa~r~~~~~~~~~kL 242 (1520)
|+.++... ...+..|.++.+.-.+-+ -..++++-...|-.+ ++|+..... +.+
T Consensus 157 ~v~v~dlG----------~D~v~~~~~~~~~~~l~~-----~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v 216 (345)
T PF10282_consen 157 FVYVPDLG----------ADRVYVYDIDDDTGKLTP-----VDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTV 216 (345)
T ss_dssp EEEEEETT----------TTEEEEEEE-TTS-TEEE-----EEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEE
T ss_pred EEEEEecC----------CCEEEEEEEeCCCceEEE-----eeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcE
Confidence 99888765 456888888766533222 122333333333222 344444333 568
Q ss_pred EEEecCCCCCCCCcccccccccCCCCCCCC-cceeEEeccccceEEEEecc-ceEEEEec--cchhhhhhcccCC--C-c
Q 000428 243 HVIELGAQPGKPSFTKKQADLFFPPDFADD-FPVAMQISHKYGLIYVITKL-GLLFVYDL--ETAAAVYRNRISP--D-P 315 (1520)
Q Consensus 243 ~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~D-FPv~mqvs~k~g~iyviTK~-G~l~lyDl--~tg~~i~~~rIs~--~-~ 315 (1520)
.+++++...| .+.....--..|+..... .|-.|.+|+.-..+|+-.+. +.|.+|++ +||++-...+++. + |
T Consensus 217 ~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 217 SVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred EEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc
Confidence 8888875444 243333222334444333 89999999999999998754 57999998 5677665555543 1 2
Q ss_pred eEEeeccCCCCcEEEEc-CCCcEEEEEeecCc
Q 000428 316 IFLTSEASSLGGFYAIN-RRGQVLLATVNEAT 346 (1520)
Q Consensus 316 iF~~~~~~~~~Gi~~Vn-~~GqVl~v~i~~~~ 346 (1520)
--++- ++++.=+++.| ..|.|..+.+|.++
T Consensus 295 r~~~~-s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 295 RHFAF-SPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred cEEEE-eCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 22222 12222244444 55677777777543
No 186
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.04 E-value=56 Score=43.05 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=174.4
Q ss_pred cccceeeecCeeEEEEecCCCCeEEEEEcCCCCCc-----cccccCcccccccCCc-ceeeeeccCCCCCCCcEEEEehh
Q 000428 27 TFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQP-----LRRPITADSALMNPNS-RILALKAQLPGTTQDHLQIFNIE 100 (1520)
Q Consensus 27 ~f~~~t~eSdk~icvre~~~~~~v~Ivdl~~~~~~-----~r~pi~AdsAimnP~~-~iiAlra~~~~~~g~~lQiFnle 100 (1520)
+=+++.+..|-+=.+--. ++.|.++||.|+.+. +|++|+.= -.+|.. -.||+- . +...+.-|+.
T Consensus 16 r~Gnl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~i--alSp~g~lllavd-E-----~g~~~lvs~~ 85 (893)
T KOG0291|consen 16 RAGNLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRI--ALSPDGTLLLAVD-E-----RGRALLVSLL 85 (893)
T ss_pred ecCcEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEE--EeCCCceEEEEEc-C-----CCcEEEEecc
Confidence 335666666655444333 349999999987663 45555532 256764 355654 2 4567888999
Q ss_pred hhccccccccCCceeEEEeccC-CeEEEEecCcEEEEeccCCCC-ccchhhcccCCCCC--eEEEeeeCCCCCeEEEEec
Q 000428 101 LKAKIKSHQMSEQVVFWKWISP-KMLGVVTQTSVYHWSIEGDSE-PVKMFDRTANLTNN--QIINYKCDPTEKWLVLIGI 176 (1520)
Q Consensus 101 ~k~klks~~~~e~vvfWkWis~-~~l~lVT~~aVyHW~i~~~~~-P~k~f~R~~~L~~~--qIi~Y~~~~~~kW~~l~Gi 176 (1520)
.+..+..|.+..+|-=-+|=-+ +.+|+-.++-+=.|...|... -.--|.||....|+ .|+.-.-+.|.. ++++|-
T Consensus 86 ~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-~l~~gs 164 (893)
T KOG0291|consen 86 SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-LLVTGS 164 (893)
T ss_pred cceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-eEEecc
Confidence 9999999999999988888522 388888899999998865322 22348888777663 577766666655 445552
Q ss_pred cCCCCCCCccccceEEEeeccccc---ccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCC-
Q 000428 177 APGSAERPQLVKGNMQLFSVDQQR---SQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPG- 252 (1520)
Q Consensus 177 ~~~~~~~~~~i~G~mQLyS~er~~---sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~- 252 (1520)
+ .=..-||+++... .-++-||-..-+..-+.-+. ..++..+.. |-|.+-+.+..|+
T Consensus 165 ------r----D~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~--~~l~tvskd--------G~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 165 ------R----DLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS--LDLYTVSKD--------GALFVWTCDLRPPE 224 (893)
T ss_pred ------c----cceEEEEEeccccccceEeccCCCcceEEEEeccCc--ceEEEEecC--------ceEEEEEecCCCcc
Confidence 2 3345567666554 36677775333333232222 223333322 2344444442211
Q ss_pred ------------------------CCCcccccccccCCCCCCCCcceeEEec---cccceEEEEeccceEEEEeccchhh
Q 000428 253 ------------------------KPSFTKKQADLFFPPDFADDFPVAMQIS---HKYGLIYVITKLGLLFVYDLETAAA 305 (1520)
Q Consensus 253 ------------------------~~~f~kk~~d~~fpp~~~~DFPv~mqvs---~k~g~iyviTK~G~l~lyDl~tg~~ 305 (1520)
.+.|-.|..-.+|..+ |+=+..+ +.-.++-+-=..|-.+||++-+=++
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~-----~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l 299 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN-----SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL 299 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeeccc-----ccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence 1123334434444422 1222222 3334555555789999999999999
Q ss_pred hhhcccCCCceEEeeccCCCCcEEEEc--CCCcEEEEEeecCccccchhcc
Q 000428 306 VYRNRISPDPIFLTSEASSLGGFYAIN--RRGQVLLATVNEATIVPFVSGQ 354 (1520)
Q Consensus 306 i~~~rIs~~~iF~~~~~~~~~Gi~~Vn--~~GqVl~v~i~~~~ivpyi~~~ 354 (1520)
|+.-+||+.+|-..+-+ .+|.-|++. |-||.+=-.- ..=.||+.+
T Consensus 300 ih~LSis~~~I~t~~~N-~tGDWiA~g~~klgQLlVweW---qsEsYVlKQ 346 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFN-STGDWIAFGCSKLGQLLVWEW---QSESYVLKQ 346 (893)
T ss_pred EEEeecccceeeEEEec-ccCCEEEEcCCccceEEEEEe---eccceeeec
Confidence 99999999999887764 566677776 5578764333 333566553
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=64 Score=39.36 Aligned_cols=238 Identities=20% Similarity=0.207 Sum_probs=129.8
Q ss_pred hCCCCHHHHHHHHHhhhc--CCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHh
Q 000428 1011 TADLPHELIELLEKIVLQ--NSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKK 1088 (1520)
Q Consensus 1011 ~a~lp~eLi~lLekivl~--~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK 1088 (1520)
.-|.|.--.++|.--+.+ +|.|..|=.+-|+.=+..-|+-- .|-=+--||-|+. |+++..|.++
T Consensus 197 KlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae---~E~k~ladN~~~~-----------~~f~~~l~rH 262 (557)
T KOG3785|consen 197 KLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE---DEKKELADNIDQE-----------YPFIEYLCRH 262 (557)
T ss_pred hcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH---HHHHHHHhccccc-----------chhHHHHHHc
Confidence 334443334444332322 46677766666665544222211 1111122344432 6666666665
Q ss_pred c----CCcHHHHHHH---HHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcc---hHH--HHHH
Q 000428 1089 F----NLNVQAVNVL---LDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDAT---QFL--DVIR 1156 (1520)
Q Consensus 1089 ~----~~~~~Ai~vL---i~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s---~~~--evi~ 1156 (1520)
+ ..-.-|+.|| ++++ ||---.|.-.||..+.|.||+.-- |--+|. .|. .|+.
T Consensus 263 NLVvFrngEgALqVLP~L~~~I---------------PEARlNL~iYyL~q~dVqeA~~L~-Kdl~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHI---------------PEARLNLIIYYLNQNDVQEAISLC-KDLDPTTPYEYILKGVVF 326 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhC---------------hHhhhhheeeecccccHHHHHHHH-hhcCCCChHHHHHHHHHH
Confidence 3 3334455554 3332 232234455567888999998754 433333 332 5555
Q ss_pred HHHh--cCChhHH---HHHHHHHhhhcCCcchhH-----HHHHHHHhhCChhhHHHHhcC-----cCcchH-HHHHhhhh
Q 000428 1157 AAED--ADVYHDL---VRYLLMVRQKVKEPKVDS-----ELIYAYAKIDRLGDIEEFILM-----PNVANL-QNVGDRLY 1220 (1520)
Q Consensus 1157 ~a~~--a~~~e~L---i~yL~m~r~~~~ep~id~-----~lv~~yAk~~~l~ele~fl~~-----~N~a~v-~~vgd~~~ 1220 (1520)
++.- .|.-|.+ -.|++|+-.. -..-|| +...++.-.-+++++--|+++ .|.-+. .+.+....
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~S--a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGES--ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhccc--ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 5541 2222222 3455553221 111122 233344444567777777665 555444 55777788
Q ss_pred ccccHHHHHHHHHhhcCHH---------HHHHHHHHhcCHHHHHHHHHHhCChhh----HHHHHHHHhcchhh
Q 000428 1221 DDTLYEAAKIIYAFISNWA---------KLAVTLVKLKQFQGAVDAARKANSAKT----WKEVCFACVDAEEF 1280 (1520)
Q Consensus 1221 eeg~YeaAk~~y~~~~N~~---------kLA~~lv~L~~y~~Ave~AkKa~~~k~----wk~v~~acv~~~e~ 1280 (1520)
.-|.|.+|-++|-.++.-. -||+||+++|+.+-|-+..-|.+++.- .+-+...|+..++|
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999998887432 369999999999999999999887642 22234455544433
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.93 E-value=0.43 Score=42.75 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=25.9
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
-++++.|+.+|.++...|+.++|+..|-++
T Consensus 28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 28 PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 448899999999999999999999998775
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=88.55 E-value=31 Score=39.88 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcch-H-----HHHHHHHHhcCChhHHHHHHHHHhhh-cCCcchhHH
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQ-F-----LDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSE 1186 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~-~-----~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~ 1186 (1520)
..++.+|.-|......|+..+|++.|.+. ..|.. + -.+.++.++.+++++-+.++++.-+. -..|.+|-.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 35666788888888888888888887665 22221 1 14456677888888888888765443 556666654
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.42 E-value=18 Score=44.80 Aligned_cols=175 Identities=10% Similarity=0.119 Sum_probs=93.6
Q ss_pred CcEEEEehhhhccccccccCCceeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCC
Q 000428 92 DHLQIFNIELKAKIKSHQMSEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDP 166 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~ 166 (1520)
..|.|+|.+......-..-.+.+..=+|-.+ +.|+.++. ..+|.|++.+. .+..+.. +.+. ....+.++
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-~~~~l~~----~~g~-~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG-ARKVVAS----FRGH-NGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC-ceEEEec----CCCc-cCceeECC
Confidence 6899999877653211222456777888644 46777764 35999999642 2333321 1111 12468899
Q ss_pred CCCeEEEEeccCCCCCCCccccceEEEeecc--cccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEE
Q 000428 167 TEKWLVLIGIAPGSAERPQLVKGNMQLFSVD--QQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHV 244 (1520)
Q Consensus 167 ~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~e--r~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i 244 (1520)
|++|++.++-. .|.++||..+ .+..+.+.+|.+....... +....-++|+... .|. ..+..
T Consensus 258 DG~~La~~~~~----------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~w---SpDG~~i~f~s~~-~g~---~~I~~ 320 (429)
T PRK01742 258 DGSRLAFASSK----------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSW---SPDGQSILFTSDR-SGS---PQVYR 320 (429)
T ss_pred CCCEEEEEEec----------CCcEEEEEEECCCCCeEeeccCCCCcCCEEE---CCCCCEEEEEECC-CCC---ceEEE
Confidence 99999987632 4667887553 3444555555543222211 1223345555432 221 34555
Q ss_pred EecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhh
Q 000428 245 IELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAA 305 (1520)
Q Consensus 245 ~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~ 305 (1520)
++.+. +.. ++ + .+. . +. ..+|+.=..|++.+..+ +.++|+.||.+
T Consensus 321 ~~~~~--~~~---~~-l----~~~--~-~~--~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~ 365 (429)
T PRK01742 321 MSASG--GGA---SL-V----GGR--G-YS--AQISADGKTLVMINGDN-VVKQDLTSGST 365 (429)
T ss_pred EECCC--CCe---EE-e----cCC--C-CC--ccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence 55432 111 11 1 111 1 22 34566656666666655 56699999864
No 191
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=87.58 E-value=2.9 Score=36.94 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhc--CCcch---HHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhh
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRA--DDATQ---FLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKI 1194 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~---~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~ 1194 (1520)
++|+.+|..+...|+.++|+.+|-++ .+|.. +.....+....++++.-+++++.+.... |
T Consensus 1 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~------------- 65 (100)
T cd00189 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--P------------- 65 (100)
T ss_pred CHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C-------------
Confidence 36889999999999999999998775 22222 2233344444455555555555432210 0
Q ss_pred CChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhh
Q 000428 1195 DRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFI 1235 (1520)
Q Consensus 1195 ~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~ 1235 (1520)
.+......+|..+...|+++.|...+...
T Consensus 66 ------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 66 ------------DNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred ------------cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11112355777777788888888777654
No 192
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=87.55 E-value=12 Score=48.80 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=88.6
Q ss_pred hHH-HHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhC----ChhhHHHH-----HHHHhcchhh
Q 000428 1211 NLQ-NVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKAN----SAKTWKEV-----CFACVDAEEF 1280 (1520)
Q Consensus 1211 ~v~-~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~----~~k~wk~v-----~~acv~~~e~ 1280 (1520)
+++ ..++.+++.|.-.+|..+|.+...|+....||+.+|+-.+|-++-++-- .+..|+-. ...|.
T Consensus 399 q~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y----- 473 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY----- 473 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH-----
Confidence 443 3999999999999999999999999999999999998888888766533 23344322 12333
Q ss_pred hHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhh
Q 000428 1281 RLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRL 1357 (1520)
Q Consensus 1281 rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~i 1357 (1520)
+-|++.+=.+...+ --.+.....++++|.++...+++.+.++.--.|.+. +.=|+--+-+|.-..++.|..-+
T Consensus 474 EkawElsn~~sarA--~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf--~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 474 EKAWELSNYISARA--QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF--GLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHhhhhhHHH--HHhhccccccchhHHHHHHHHHHHhhcCccchhHHH--hccHHHHHHhhhHHHHHHHHHHh
Confidence 22332110000000 001111235578999999999999877765555444 33345556677777777775554
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.23 E-value=3.6 Score=48.11 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=44.7
Q ss_pred HcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHH-hCChhHHHHHHHHHHhhccHHHHHHHHHh
Q 000428 1075 EAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFR-VEEDAVWSQVAKAQLREGLVSDAIESFIR 1144 (1520)
Q Consensus 1075 e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek-~~~~eVw~~lgka~l~~~~v~eAI~~Yik 1144 (1520)
+...|+.|+.++.+.++|++|+..+-+ ++..=-. .-.++.||.+|.+|...|+.++|+..|-+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~-------fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~ 205 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQN-------FVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS 205 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345577888887666888888876433 2211111 12367999999999999999999999876
No 194
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.12 E-value=15 Score=45.10 Aligned_cols=91 Identities=14% Similarity=0.341 Sum_probs=64.1
Q ss_pred CcEEEEehhhhccccccccC--CceeEEEeccCCeEEEEecC---cEEEEeccCCCCccchhhcccCCCCC---eEEEee
Q 000428 92 DHLQIFNIELKAKIKSHQMS--EQVVFWKWISPKMLGVVTQT---SVYHWSIEGDSEPVKMFDRTANLTNN---QIINYK 163 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~--e~vvfWkWis~~~l~lVT~~---aVyHW~i~~~~~P~k~f~R~~~L~~~---qIi~Y~ 163 (1520)
..+-.||.+|-.+.--+.-. -.+.=-.|. |+-..+||+. ..+||+.+|+- ..+-.+. .|..-.
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~--------~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNI--------LGNWEGVRDPKVHDLA 361 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEc-cCCceeEecCCCCcEEEecCCcch--------hhcccccccceeEEEE
Confidence 45889999998766544333 335555665 6667788864 79999998754 1112233 388889
Q ss_pred eCCCCCeEEEEeccCCCCCCCccccceEEEeeccccccc
Q 000428 164 CDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQ 202 (1520)
Q Consensus 164 ~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ 202 (1520)
..+|+||+++++ +.-.|-||++|.++-.
T Consensus 362 it~Dgk~vl~v~-----------~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 362 ITYDGKYVLLVT-----------VDKKIRLYNREARVDR 389 (519)
T ss_pred EcCCCcEEEEEe-----------cccceeeechhhhhhh
Confidence 999999999999 3446778998877654
No 195
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.89 E-value=9 Score=42.14 Aligned_cols=118 Identities=11% Similarity=0.154 Sum_probs=85.0
Q ss_pred hcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhcccc-----HHHHHHHHHhhc-CHHHHHHHHHHhcC
Q 000428 1177 KVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTL-----YEAAKIIYAFIS-NWAKLAVTLVKLKQ 1250 (1520)
Q Consensus 1177 ~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~-----YeaAk~~y~~~~-N~~kLA~~lv~L~~ 1250 (1520)
+.-+|.+-.-++..+.+.|++..+..||.-.=..|=..++-.+.+.|. ++-|.+.+...+ .+..+..++...|+
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~ 104 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQ 104 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCC
Confidence 345556666688888888998888888776444444555555555544 888999999999 89999999999999
Q ss_pred HHHHHHHHHHhCChh--hHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcC
Q 000428 1251 FQGAVDAARKANSAK--TWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRG 1308 (1520)
Q Consensus 1251 y~~Ave~AkKa~~~k--~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G 1308 (1520)
+-+|+.++|+..... .-....+|+..+++--+ .-.+-++|+.++
T Consensus 105 vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l--------------f~~V~~ff~~~n 150 (167)
T PF07035_consen 105 VLEALRYARQYHKVDSVPARKFLEAAANSNDDQL--------------FYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH--------------HHHHHHHHHHhh
Confidence 999999999953321 12234566666555555 557778887755
No 196
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.72 E-value=7.7 Score=46.41 Aligned_cols=209 Identities=14% Similarity=0.213 Sum_probs=118.6
Q ss_pred HHHHhhhhccccHHHHHHHH-------HhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHh
Q 000428 1213 QNVGDRLYDDTLYEAAKIIY-------AFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQI 1285 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y-------~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~ 1285 (1520)
+++|.++...|++..|-..+ ..++.|.-|+.+|+++++-..|....+.--+.-.. +..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-----------~VT~--- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-----------DVTY--- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-----------hhhh---
Confidence 34555555555555554444 45668999999999999999998877763332222 1122
Q ss_pred hccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhcc---ChhhhHHHHHHHHHhhchHHH
Q 000428 1286 CGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARY---RYEKLMEHIKLFSTRLNIPKL 1362 (1520)
Q Consensus 1286 ~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky---~pekLmehlk~y~~~iNi~K~ 1362 (1520)
+-+..+-+|..|..+++++||+..+.++..|+---- +|+-.-| +||--|- -|..-+..-
T Consensus 293 -----------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~Alr---yYRRiLqmG-- 354 (478)
T KOG1129|consen 293 -----------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALR---YYRRILQMG-- 354 (478)
T ss_pred -----------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHH---HHHHHHHhc--
Confidence 456778899999999999999999988877743000 1111111 3554332 233222222
Q ss_pred HHHHHhhcchHHHHHHHHhhccHHHHHHHHHhc---------CchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCc---
Q 000428 1363 IRACDEQQHWKELTYLYIQYDEFDNAATTIMNH---------SPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHP--- 1430 (1520)
Q Consensus 1363 i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h---------~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P--- 1430 (1520)
....+++-..-.-|.-.++||-++-.+... ..|-|-.=-| |.+.+++..+-.|....+|...|
T Consensus 355 ---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~--vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 355 ---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGF--VAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred ---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccce--eEEeccchHHHHHHHHHHhccCcchH
Confidence 445566666666666666777655333222 2233433333 23444555555666666665555
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHHHhh
Q 000428 1431 DLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQS 1471 (1520)
Q Consensus 1431 ~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~ 1471 (1520)
+-++.| .+|. -..++|--+|.+|.+..+
T Consensus 430 ealnNL-avL~------------~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 430 EALNNL-AVLA------------ARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhH-HHHH------------hhcCchHHHHHHHHHhhh
Confidence 333333 2222 124556667777766443
No 197
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.63 E-value=43 Score=37.04 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=33.3
Q ss_pred cceEEEEeccce-EEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeec
Q 000428 283 YGLIYVITKLGL-LFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNE 344 (1520)
Q Consensus 283 ~g~iyviTK~G~-l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~ 344 (1520)
-|.||+.+..|- +.+ |++||..+++..++. +.+.+....+=+++.++.|.|..+.+..
T Consensus 173 ~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 173 DGRVYVSSGDGRVVAV-DLATGEKLWSKPISG---IYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp TTEEEEECCTSSEEEE-ETTTTEEEEEECSS----ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC---ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 459999999994 566 999999776333222 2221222222244444566666655443
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.40 E-value=22 Score=39.68 Aligned_cols=134 Identities=22% Similarity=0.184 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhcCC--------cchHHHHHHHHHhcCChhHHHHHHHHHhh-hcCCcchhHH---
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRADD--------ATQFLDVIRAAEDADVYHDLVRYLLMVRQ-KVKEPKVDSE--- 1186 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika~d--------~s~~~evi~~a~~a~~~e~Li~yL~m~r~-~~~ep~id~~--- 1186 (1520)
++-+|..|...+..|+..+||..|-+..+ ++..-.+.++.+..|++++-+..++.-.+ --..|.+|-.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 44455555556666666666655544311 11111445555555555555555554222 1333444433
Q ss_pred HHHHHHhhCC---------------hhhHHHHhcC-cCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcC
Q 000428 1187 LIYAYAKIDR---------------LGDIEEFILM-PNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQ 1250 (1520)
Q Consensus 1187 lv~~yAk~~~---------------l~ele~fl~~-~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~ 1250 (1520)
++.++-+..+ +..++.||.. ||+.-+.....+..+...--+-++++ +|..|.+.|.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~--------ia~~Y~~~~~ 156 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY--------IARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH--------HHHHHHCTT-
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHccc
Confidence 1222111100 1223444443 55544444333333333333333332 5777777777
Q ss_pred HHHHHHHHHH
Q 000428 1251 FQGAVDAARK 1260 (1520)
Q Consensus 1251 y~~Ave~AkK 1260 (1520)
|..|+..++.
T Consensus 157 y~aA~~r~~~ 166 (203)
T PF13525_consen 157 YKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766655
No 199
>PLN02789 farnesyltranstransferase
Probab=86.29 E-value=30 Score=41.71 Aligned_cols=95 Identities=9% Similarity=0.177 Sum_probs=63.0
Q ss_pred hcC-CHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhcc
Q 000428 1306 NRG-YFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDE 1384 (1520)
Q Consensus 1306 ~~G-~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e 1384 (1520)
..| .+++++.++++++..+..+.-++...+.++-+.++...-+.+..+...+.+. +.+.|.|...-+++.+.|.
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-----pkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-----AKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhhh
Confidence 345 5789999999998777665555555555555554321112233333444444 6689999999999999999
Q ss_pred HHHHHHHHHhc------Cchhhcchhh
Q 000428 1385 FDNAATTIMNH------SPEAWDHMQF 1405 (1520)
Q Consensus 1385 ~d~A~~~mi~h------~~~a~~h~~f 1405 (1520)
|++|+..+-.- ...||.|-.|
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence 99999443331 3568988775
No 200
>PRK02889 tolB translocation protein TolB; Provisional
Probab=86.22 E-value=63 Score=40.19 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=93.7
Q ss_pred eeEEEEecCCCCeEEEEEcCCCCCc---cccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCc
Q 000428 37 KYICVRETAPQNSVVIIDMNQPMQP---LRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQ 113 (1520)
Q Consensus 37 k~icvre~~~~~~v~Ivdl~~~~~~---~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~ 113 (1520)
+..-|....+..++.+.|.. +.++ ++.+-..-+.-.+|..+-||.-.. ......|.++|+++.++..-..++..
T Consensus 165 ~iayv~~~~~~~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~--~~~~~~I~~~dl~~g~~~~l~~~~g~ 241 (427)
T PRK02889 165 RIAYVIKTGNRYQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSF--ESKKPVVYVHDLATGRRRVVANFKGS 241 (427)
T ss_pred EEEEEEccCCccEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEc--cCCCcEEEEEECCCCCEEEeecCCCC
Confidence 44444432222389898874 3322 222222224455677787776421 12235699999988754322223333
Q ss_pred eeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCcccc
Q 000428 114 VVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVK 188 (1520)
Q Consensus 114 vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~ 188 (1520)
+..=.|-.+ +.|++.+. ..+|-+++.+. .+.++.. +.. -..+..-++|++|++.++ . -.
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~~~----~~~~~~wSpDG~~l~f~s------~----~~ 305 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQ-SSG----IDTEPFFSPDGRSIYFTS------D----RG 305 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEECCC-CCC----CCcCeEEcCCCCEEEEEe------c----CC
Confidence 334456533 46777654 24666666442 2444432 221 123456799999998764 1 13
Q ss_pred ceEEEeeccc--cccccc--chhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 189 GNMQLFSVDQ--QRSQAL--EAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 189 G~mQLyS~er--~~sQ~i--eghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
|..|+|.+.- +..+.+ +|+...-..+. ...+.++|+.+.... ..|.++++..
T Consensus 306 g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~S-----pDG~~Ia~~s~~~g~----~~I~v~d~~~ 361 (427)
T PRK02889 306 GAPQIYRMPASGGAAQRVTFTGSYNTSPRIS-----PDGKLLAYISRVGGA----FKLYVQDLAT 361 (427)
T ss_pred CCcEEEEEECCCCceEEEecCCCCcCceEEC-----CCCCEEEEEEccCCc----EEEEEEECCC
Confidence 6678998752 222222 33211112222 234466677654322 4688887743
No 201
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.10 E-value=11 Score=49.22 Aligned_cols=259 Identities=17% Similarity=0.218 Sum_probs=118.0
Q ss_pred HHcccCHHHHHHHHHcCCCCCCCC-HHHHHHHhcCCC------CCCCCCcHHHHHHHHhhcCCC-Chhhh---HHHHHHH
Q 000428 384 LFAQTKYKEAAELAAESPQGLLRT-PDTVAKFQSVPV------QAGQTPPLLQYFGTLLTRGKL-NAFES---LELSRLV 452 (1520)
Q Consensus 384 l~~~g~y~~AA~~AA~sP~g~LRt-~~Ti~rfk~~~~------~~Gq~~pLL~Yf~~ll~~g~l-n~~es---lEL~r~v 452 (1520)
++..|.|++|+.+|-..-.++=.. ..-+.-|+.--. +|.....+..-|...+...+- +++-. -=+.+|=
T Consensus 121 ~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ilg~cD 200 (613)
T PF04097_consen 121 CLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKILGRCD 200 (613)
T ss_dssp HHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHHHHT--
T ss_pred HHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 789999999999993222222222 233333333222 222233566666655533221 33322 1122221
Q ss_pred Hhhcchhh------HHHHH-------hhcc--------cccchhhhhhhhccChhhHHHHHHhcCCCHHHHHHHHHhccH
Q 000428 453 VNQNKKNL------LENWL-------AEDK--------LECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREF 511 (1520)
Q Consensus 453 l~qnr~~L------lekWL-------~enk--------L~~Se~lGD~~~~~D~~LA~~iY~r~~~~~KvI~~~~e~g~f 511 (1520)
-+++.+ +|-|| .++. -+.=+.|.+.+.++-+. -|..++-+.---+.|.=+|||
T Consensus 201 --~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~----~F~~~~~p~~Yf~~LlLtgqF 274 (613)
T PF04097_consen 201 --LSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGES----HFNAGSNPLLYFQVLLLTGQF 274 (613)
T ss_dssp --CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GG----GCTT------HHHHHHHTT-H
T ss_pred --ccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchh----hcccchhHHHHHHHHHHHhhH
Confidence 234444 78888 2222 11123444444444321 111144555667889999999
Q ss_pred HHHHHHHHHh-CCchh---------HHHHHHHHhhcCchhHHHHHHHHHhc-CCCCCCCHHHHHHHHHh---CCcHHHHH
Q 000428 512 DKILIYSKQV-GYTPD---------YLFLLQTILRTDPQGAVNFALMMSQM-EGGCPVDYNTITDLFLQ---RNLIREAT 577 (1520)
Q Consensus 512 ~~~~~Y~~~~-~~~~d---------~~~lL~~~~~~np~~~~~la~~l~~~-e~~~~~dv~~vv~~F~~---~~l~~e~t 577 (1520)
+.+++|+-+. ++..| |..+|.. |.. .. ...+..+ +.++++++...+-.+.+ ..-++++.
T Consensus 275 E~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~-----~~~-~~-~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al 347 (613)
T PF04097_consen 275 EAAIEFLYRNEFNRVDAVHFAIALAYYGLLRV-----SDS-SS-APLLSVDPGDPPPLNFARLIGQYTRSFEITDPREAL 347 (613)
T ss_dssp HHHHHHHHT--T-HHHHHHHHHHHHHTT-------------------------------HHHHHHHHHHTTTTT-HHHHH
T ss_pred HHHHHHHHhhccCcccHHHHHHHHHHcCCCCC-----CCc-cc-cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHH
Confidence 9999999983 33333 4444443 111 11 2222222 22345777777666544 46677777
Q ss_pred HHHHHhhcCCCCC-----CchhhhHHHHhh--------hccC-chhHHHHhhCCCCCCCCh---------hHHHHHHHHh
Q 000428 578 AFLLDVLKPNLPE-----HGFLQTKVLEIN--------LVTF-PNVADAILANGMFSHYDR---------PRIAQLCEKA 634 (1520)
Q Consensus 578 ~~Ll~~lk~n~~e-----~~~LQt~Lle~n--------l~~~-p~Vad~Il~~~~l~~yD~---------~~IA~lCe~a 634 (1520)
+-+-=+-....++ +.-+-.+++++. +..| .+.-..|-....|-+|+. ..+|.-|++.
T Consensus 348 ~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~ 427 (613)
T PF04097_consen 348 QYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAEER 427 (613)
T ss_dssp HHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHHHHC
Confidence 7665443333332 334556667766 3334 367777755555666653 4568889999
Q ss_pred CcHHHHHHhcCCCcchhHHhh
Q 000428 635 GLYMRALQHYTELPDIKRVIV 655 (1520)
Q Consensus 635 gL~e~Ale~Y~~~~dikR~~~ 655 (1520)
|.++.|...|.=..+.++|+.
T Consensus 428 g~~~dAi~Ly~La~~~d~vl~ 448 (613)
T PF04097_consen 428 GRFEDAILLYHLAEEYDKVLS 448 (613)
T ss_dssp T-HHHHHHHHHHTT-HHHHHH
T ss_pred CCHHHHHHHHHHHhhHHHHHH
Confidence 999999999997777777653
No 202
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.08 E-value=2.2 Score=48.90 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc-CC
Q 000428 1069 VGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA-DD 1147 (1520)
Q Consensus 1069 IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika-~d 1147 (1520)
+|-+....|..+.|.+-|+| |+..+. ++.+|...+|--....|+.++|-..|.+| .+
T Consensus 75 ~A~~Yq~~Ge~~~A~e~Yrk--------------------Alsl~p--~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 75 RAHYYQKLGENDLADESYRK--------------------ALSLAP--NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred HHHHHHHcCChhhHHHHHHH--------------------HHhcCC--CccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 36666677777777777777 444444 48999999999999999999999999998 45
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcC------cCcchHHHHHhhhhc
Q 000428 1148 ATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILM------PNVANLQNVGDRLYD 1221 (1520)
Q Consensus 1148 ~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~------~N~a~v~~vgd~~~e 1221 (1520)
|.-+. ...+.+ .++.|-.|.|+.+..++|+.. .|.....+.++..++
T Consensus 133 P~Y~~-~s~t~e--------------------------N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 133 PAYGE-PSDTLE--------------------------NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred CCCCC-cchhhh--------------------------hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 43311 111111 145566666666666655432 344445788999999
Q ss_pred cccHHHHHHHHHhhc
Q 000428 1222 DTLYEAAKIIYAFIS 1236 (1520)
Q Consensus 1222 eg~YeaAk~~y~~~~ 1236 (1520)
+|+|-.|+.+++.+.
T Consensus 186 ~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 186 AGDYAPARLYLERYQ 200 (250)
T ss_pred cccchHHHHHHHHHH
Confidence 999999999888665
No 203
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.05 E-value=1.3 Score=39.56 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=40.2
Q ss_pred HHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1214 NVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1214 ~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
..|..+++.|+|+.|...|+.+- -|..+|.|+...|++++|++..+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45788899999999999998664 4667799999999999999998885
No 204
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.02 E-value=56 Score=39.45 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=46.9
Q ss_pred cceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEE
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLA 340 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v 340 (1520)
-|.||+.+..|.|+++|..||+.+.+..+...+++.+. --..+++++.+++|.|..+
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp-~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPP-VVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCC-EEECCEEEEEeCCceEEEe
Confidence 37999999999999999999999998887776655443 3345679999999999865
No 205
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=85.94 E-value=39 Score=44.60 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=87.0
Q ss_pred hcCHHHHHHHHHHhCChh-hHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1248 LKQFQGAVDAARKANSAK-TWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1248 L~~y~~Ave~AkKa~~~k-~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
..-|-.|.+...+.++++ +|-.+.+|.. -+.-.++. +-.....++.+|.+.|+.+.|-.|+-++..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~-----------~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV-----------YYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH-----------HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 455677888888877554 5543333221 11233333 235557788999999999999999999999
Q ss_pred ccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHH
Q 000428 1327 HMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATT 1391 (1520)
Q Consensus 1327 h~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~ 1391 (1520)
|+-+-|-||-++.+-+..++-++-..-+..+.++ +.+..-|-.+--.+-+-|+.+.|+..
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-----p~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-----PLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999999998777766533333333333 33455677777777888888887743
No 206
>PTZ00420 coronin; Provisional
Probab=85.86 E-value=78 Score=41.29 Aligned_cols=222 Identities=11% Similarity=0.165 Sum_probs=108.8
Q ss_pred CcEEEEehhhhcccccccc-CCceeEEEecc--CCeEEEEe-cCcEEEEeccCCC-------CccchhhcccCCCCCeEE
Q 000428 92 DHLQIFNIELKAKIKSHQM-SEQVVFWKWIS--PKMLGVVT-QTSVYHWSIEGDS-------EPVKMFDRTANLTNNQII 160 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~-~e~vvfWkWis--~~~l~lVT-~~aVyHW~i~~~~-------~P~k~f~R~~~L~~~qIi 160 (1520)
..+.+|++.++..+..+.- ..+|.-=.|-. ++.|+-.+ +..|..|++.... .|...+..|. ..|-
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~----~~V~ 129 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK----KKIS 129 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC----CcEE
Confidence 4578888877654443332 34677777753 34555544 4588999995322 2333444332 3466
Q ss_pred EeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccccccc-ccchhhccceeeecCCCCCCceEEEEEEecCCCCccc
Q 000428 161 NYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQ-ALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVT 239 (1520)
Q Consensus 161 ~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ-~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~ 239 (1520)
.-..+++..+++++|-. .|.+.+|.++.+... .++.+ .....+.+. ...++|+.+.+ .
T Consensus 130 sVaf~P~g~~iLaSgS~----------DgtIrIWDl~tg~~~~~i~~~-~~V~Slsws---pdG~lLat~s~---D---- 188 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGF----------DSFVNIWDIENEKRAFQINMP-KKLSSLKWN---IKGNLLSGTCV---G---- 188 (568)
T ss_pred EEEECCCCCeEEEEEeC----------CCeEEEEECCCCcEEEEEecC-CcEEEEEEC---CCCCEEEEEec---C----
Confidence 66667888887777633 789999998876421 22322 222222221 11335544432 2
Q ss_pred ceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeE-EeccccceEEEEecc----ceEEEEeccc-hhhhhhcccCC
Q 000428 240 SKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAM-QISHKYGLIYVITKL----GLLFVYDLET-AAAVYRNRISP 313 (1520)
Q Consensus 240 ~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~m-qvs~k~g~iyviTK~----G~l~lyDl~t-g~~i~~~rIs~ 313 (1520)
++++|.++-.. .+. ..+.........--+.+ .+|..-+.|...... +-|.|||+.+ +.++....+-.
T Consensus 189 ~~IrIwD~Rsg--~~i-----~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 189 KHMHIIDPRKQ--EIA-----SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred CEEEEEECCCC--cEE-----EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 57999987432 110 01100000000000011 112233434333322 3799999995 77776544322
Q ss_pred C-ceEEeeccCCCCcEEEEc-CCCcEEEEEeecC
Q 000428 314 D-PIFLTSEASSLGGFYAIN-RRGQVLLATVNEA 345 (1520)
Q Consensus 314 ~-~iF~~~~~~~~~Gi~~Vn-~~GqVl~v~i~~~ 345 (1520)
. .+..-..++.++-+++.. .+|.|.--.+...
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 2 111112223333333333 5666666666544
No 207
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=85.79 E-value=11 Score=44.03 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=119.7
Q ss_pred ceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEec--cCCCCccchhhcccCCC
Q 000428 78 RILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSI--EGDSEPVKMFDRTANLT 155 (1520)
Q Consensus 78 ~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i--~~~~~P~k~f~R~~~L~ 155 (1520)
-+||.+|+ -.++.+|+..|++- -.+-.=.+.+-+-||-...--|..+ ..++.-.|+|+-...++
T Consensus 85 ~~la~gG~-----~g~fd~~~~~tn~~---------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 85 VTLADGGA-----SGQFDLFACNTNDG---------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cEEEeccc-----cceeeeecccCccc---------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 46787765 46677787776542 2222223556666676666666655 34566778888777776
Q ss_pred CCe-------EEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccc---------hhhccceeeecCCC
Q 000428 156 NNQ-------IINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALE---------AHAASFAQFKVPGN 219 (1520)
Q Consensus 156 ~~q-------Ii~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ie---------ghaa~F~~~~~~g~ 219 (1520)
+.| .-+-..+.|.+|++.+|=+| .+=+|++++.---..- |++-+|.+-
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~-----------~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~----- 214 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSR-----------RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN----- 214 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCC-----------cceEEEeCCccceeeeeEecccCCCceeeeeccC-----
Confidence 543 34456899999999999662 2345666654322211 233333211
Q ss_pred CCCceEEEEEEecCCCCcccceEEEEecCCCCCCC-CcccccccccCCCCCCCCcceeEEecc--ccceEEEEeccceEE
Q 000428 220 ENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKP-SFTKKQADLFFPPDFADDFPVAMQISH--KYGLIYVITKLGLLF 296 (1520)
Q Consensus 220 ~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~-~f~kk~~d~~fpp~~~~DFPv~mqvs~--k~g~iyviTK~G~l~ 296 (1520)
=.-||+-... |-+-|-+|-.- +-| .+-.++- |+--+-| -..+.|. ..+++|.---.||+|
T Consensus 215 -----~~~FAv~~Qd-----g~~~I~DVR~~-~tpm~~~sstr-----p~hnGa~-R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 215 -----DLQFAVVFQD-----GTCAIYDVRNM-ATPMAEISSTR-----PHHNGAF-RVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred -----cceEEEEecC-----CcEEEEEeccc-ccchhhhcccC-----CCCCCce-EEEEecCCCcceEEEEecCcceEE
Confidence 1234443333 23555555221 000 0000000 0000111 1122232 223677777899999
Q ss_pred EEeccchhhhhhcccCCCc--------eEEeeccCCCCcEEEEcCCCcEEEEEee
Q 000428 297 VYDLETAAAVYRNRISPDP--------IFLTSEASSLGGFYAINRRGQVLLATVN 343 (1520)
Q Consensus 297 lyDl~tg~~i~~~rIs~~~--------iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~ 343 (1520)
|.|+.++.-.-+-+|++|- ||-|+..+++.-+. |...-|+....|+
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~-v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND-VKNELQGAEYNIL 331 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCcccc-cccchhhheeecc
Confidence 9999999999999999998 78777665555444 3333344444443
No 208
>PLN02789 farnesyltranstransferase
Probab=85.73 E-value=43 Score=40.47 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=43.4
Q ss_pred hCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHH
Q 000428 1049 ADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKA 1128 (1520)
Q Consensus 1049 ~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka 1128 (1520)
.++..+|+|.+.+ ....+.+++|+.++.+ +++.-.. +..+|..-|.+
T Consensus 34 ~~~~~a~~~~ra~-----------l~~~e~serAL~lt~~--------------------aI~lnP~--~ytaW~~R~~i 80 (320)
T PLN02789 34 PEFREAMDYFRAV-----------YASDERSPRALDLTAD--------------------VIRLNPG--NYTVWHFRRLC 80 (320)
T ss_pred HHHHHHHHHHHHH-----------HHcCCCCHHHHHHHHH--------------------HHHHCch--hHHHHHHHHHH
Confidence 3666777776543 2245667777777776 2222222 55677777777
Q ss_pred HHhhc-cHHHHHHHHHhc--CCcchHH
Q 000428 1129 QLREG-LVSDAIESFIRA--DDATQFL 1152 (1520)
Q Consensus 1129 ~l~~~-~v~eAI~~Yika--~d~s~~~ 1152 (1520)
....+ ..+++++++-++ .||.+|.
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchH
Confidence 76655 467888887665 5666655
No 209
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.70 E-value=0.84 Score=35.81 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
+++|+.+|.++...|+.++|+.+|-++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 468999999999999999999999886
No 210
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=85.64 E-value=75 Score=38.69 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=94.3
Q ss_pred CCcEEEEehhhhccccccccCCceeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeC
Q 000428 91 QDHLQIFNIELKAKIKSHQMSEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCD 165 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~ 165 (1520)
...|.+.|.+....-.-...+..+..-+|-.+ +.|+.++. ..||.|++.+.. +.++ ..+. + .+.+...+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~-~~~~---~-~~~~~~~s 242 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKV-ASFP---G-MNGAPAFS 242 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEe-ecCC---C-CccceEEC
Confidence 45688888764322111122334666677644 45776664 469999996421 2221 1111 1 12345678
Q ss_pred CCCCeEEEEeccCCCCCCCccccceEEEe--ecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEE
Q 000428 166 PTEKWLVLIGIAPGSAERPQLVKGNMQLF--SVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLH 243 (1520)
Q Consensus 166 ~~~kW~~l~Gi~~~~~~~~~~i~G~mQLy--S~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~ 243 (1520)
+|++++++.+-. .|..+|| +.+.+..+.+..|.+.-..... .+ ..+-++|+...... ..+.
T Consensus 243 pDg~~l~~~~~~----------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~--s~-dg~~l~~~s~~~g~----~~iy 305 (417)
T TIGR02800 243 PDGSKLAVSLSK----------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSW--SP-DGKSIAFTSDRGGS----PQIY 305 (417)
T ss_pred CCCCEEEEEECC----------CCCccEEEEECCCCCEEECCCCCCCCCCEEE--CC-CCCEEEEEECCCCC----ceEE
Confidence 999998877522 2334444 5555555555544332111111 11 23344444432221 4688
Q ss_pred EEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccc---eEEEEeccchh
Q 000428 244 VIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLG---LLFVYDLETAA 304 (1520)
Q Consensus 244 i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G---~l~lyDl~tg~ 304 (1520)
++++... . ...+.+. .+......+|+.-..|++.+..+ .|++||+.+|.
T Consensus 306 ~~d~~~~--~------~~~l~~~----~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 306 MMDADGG--E------VRRLTFR----GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEECCCC--C------EEEeecC----CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 8876431 1 1122222 23445566787767777777665 89999999874
No 211
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.58 E-value=8.4 Score=48.99 Aligned_cols=231 Identities=20% Similarity=0.181 Sum_probs=150.5
Q ss_pred HHhccCCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChH
Q 000428 988 VVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGP 1067 (1520)
Q Consensus 988 v~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~ 1067 (1520)
+-+..-|.+.+|+..-.-.+.|.+.+||+- +=++|..|.++.. .=++-|=|.|.-|+.++-...+.-+.|+=+-|+.
T Consensus 275 ~F~e~Np~~~~pdPf~eG~~lm~nG~L~~A-~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~ 351 (579)
T KOG1125|consen 275 QFSEENPYIDHPDPFKEGCNLMKNGDLSEA-ALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPT 351 (579)
T ss_pred eecccCcccCCCChHHHHHHHHhcCCchHH-HHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc
Confidence 334556778889988888888888888766 6678888876533 3357888999888888888888888888777776
Q ss_pred HHH---HHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHh
Q 000428 1068 AVG---EVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIR 1144 (1520)
Q Consensus 1068 ~IA---~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yik 1144 (1520)
.+- .+|+. |..-+.-.+|+..|-+ ++. ..-+.+|..-++...+.+.- .++
T Consensus 352 NleaLmaLAVS----------ytNeg~q~~Al~~L~~----------Wi~-~~p~y~~l~~a~~~~~~~~~----~s~-- 404 (579)
T KOG1125|consen 352 NLEALMALAVS----------YTNEGLQNQALKMLDK----------WIR-NKPKYVHLVSAGENEDFENT----KSF-- 404 (579)
T ss_pred cHHHHHHHHHH----------HhhhhhHHHHHHHHHH----------HHH-hCccchhccccCccccccCC----cCC--
Confidence 551 12221 2222222233332221 111 11222222211111111000 011
Q ss_pred cCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhc--CCcchhHHHHHHHHhhCChhhHHHHhc-----CcCcchH-HHHH
Q 000428 1145 ADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKV--KEPKVDSELIYAYAKIDRLGDIEEFIL-----MPNVANL-QNVG 1216 (1520)
Q Consensus 1145 a~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~--~ep~id~~lv~~yAk~~~l~ele~fl~-----~~N~a~v-~~vg 1216 (1520)
-+++++..|. --||.+||... .||.|...|+..|--.|.++...+... .||..-+ +.+|
T Consensus 405 -~~~~~l~~i~------------~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 405 -LDSSHLAHIQ------------ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred -CCHHHHHHHH------------HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 2222322222 34788899864 899999999999998899988865533 3787777 8899
Q ss_pred hhhhccccHHHHHHHHHhhc----C----HHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1217 DRLYDDTLYEAAKIIYAFIS----N----WAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1217 d~~~eeg~YeaAk~~y~~~~----N----~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
--+-.-..+++|...|...- + .+.||.++.-+|.|.+|++..-.|
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999875 4 456799999999999999887553
No 212
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=85.54 E-value=10 Score=39.74 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 000428 1242 AVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1242 A~~lv~L~~y~~Ave~AkK 1260 (1520)
|-+|...|++++|+.+.++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555554
No 213
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=84.82 E-value=1.7 Score=39.03 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.0
Q ss_pred HhCChhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1115 RVEEDAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1115 k~~~~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
.-+++++|+.+|.++...|++++|...+-+.
T Consensus 21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 21 NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3559999999999999999999999998776
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.56 E-value=0.99 Score=35.04 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
+++|+.+|.++...|+.++|+.+|-++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 578999999999999999999999885
No 215
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=84.27 E-value=47 Score=41.55 Aligned_cols=255 Identities=16% Similarity=0.254 Sum_probs=136.5
Q ss_pred eeEEEEecC-CCCeEEEEEcCCCCCccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhc--cccccccCC-
Q 000428 37 KYICVRETA-PQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKA--KIKSHQMSE- 112 (1520)
Q Consensus 37 k~icvre~~-~~~~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~--klks~~~~e- 112 (1520)
.||--|.+. +.+.+=|.-+.|-|.-.+..-..-|.=.||+.+++-+-|. +++|+||-++-|. ||.|..+..
T Consensus 184 ~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~-----d~~lrifqvDGk~N~~lqS~~l~~f 258 (514)
T KOG2055|consen 184 GYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGL-----DGTLRIFQVDGKVNPKLQSIHLEKF 258 (514)
T ss_pred cccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecC-----CCcEEEEEecCccChhheeeeeccC
Confidence 466645544 4446666666665554444444567889999998777665 7899999998664 555555533
Q ss_pred ceeEEEeccCCe-EEEEecC--cEEEEeccC-CCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCcccc
Q 000428 113 QVVFWKWISPKM-LGVVTQT--SVYHWSIEG-DSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVK 188 (1520)
Q Consensus 113 ~vvfWkWis~~~-l~lVT~~--aVyHW~i~~-~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~ 188 (1520)
|+.==......+ ..++... -.|-|+++. .-.+.+ |-.-+..--+-.+.++++.+.+++.|. .
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~---~~~g~e~~~~e~FeVShd~~fia~~G~-----------~ 324 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK---PPYGVEEKSMERFEVSHDSNFIAIAGN-----------N 324 (514)
T ss_pred ccceeeecCCCceEEEecccceEEEEeecccccccccc---CCCCcccchhheeEecCCCCeEEEccc-----------C
Confidence 232222333333 3333332 357799852 222221 111111122567889999999999995 4
Q ss_pred ceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEec-----CCCCcccceEEEEecCCCCCCCCcccccccc
Q 000428 189 GNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKS-----FNAGQVTSKLHVIELGAQPGKPSFTKKQADL 263 (1520)
Q Consensus 189 G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~-----~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~ 263 (1520)
|+|-|-+.-.+- . -+++|++|.- .=|+|.+++ .+| .|.+-|-.|+.+. ....
T Consensus 325 G~I~lLhakT~e--l-------i~s~KieG~v---~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~~--------~~~r 381 (514)
T KOG2055|consen 325 GHIHLLHAKTKE--L-------ITSFKIEGVV---SDFTFSSDSKELLASGG---TGEVYVWNLRQNS--------CLHR 381 (514)
T ss_pred ceEEeehhhhhh--h-------hheeeeccEE---eeEEEecCCcEEEEEcC---CceEEEEecCCcc--------eEEE
Confidence 777666544431 1 1234444441 112333332 012 3567777775531 1111
Q ss_pred cCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCc--EEEEcCCCcEEEEE
Q 000428 264 FFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGG--FYAINRRGQVLLAT 341 (1520)
Q Consensus 264 ~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~G--i~~Vn~~GqVl~v~ 341 (1520)
|.-.. .=.-.++++|..-..+-+-|+.|++.+||..|.. +--.+.||+.- +.-+.+ -+.-|.++|+|.|.
T Consensus 382 f~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~----~s~~PkPik~~--dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 382 FVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF----ASTNPKPIKTV--DNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred EeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhh----ccCCCCchhhh--hhhheeeeeeeeCcchhhhhhh
Confidence 11111 1244556666666677778899999999977631 11123344332 222333 34456777776553
No 216
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=84.25 E-value=2.7 Score=49.78 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=69.9
Q ss_pred HHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhc
Q 000428 1126 AKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFIL 1205 (1520)
Q Consensus 1126 gka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~ 1205 (1520)
|..+...|++++|+...-+.++.++..-.++++...++++.=.+-|+..++...|.-| +.|+ +.++.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l-~qLa------------~awv~ 175 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSIL-TQLA------------EAWVN 175 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHH-HHHH------------HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHH-HHHH------------HHHHH
Confidence 4455667888888888888888888888888888888888877777766655443322 1111 12211
Q ss_pred CcCcchHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCCh
Q 000428 1206 MPNVANLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSA 1264 (1520)
Q Consensus 1206 ~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~ 1264 (1520)
.....+.|+.|.-+|+... -...+|.|+..+|+|++|.+...+|-+.
T Consensus 176 ------------l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 176 ------------LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp ------------HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred ------------HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1111122333333333222 2345699999999999999998886544
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=4.3 Score=49.19 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=88.1
Q ss_pred cceEEEeeccccc--ccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC-CCCCCCccccccc--
Q 000428 188 KGNMQLFSVDQQR--SQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA-QPGKPSFTKKQAD-- 262 (1520)
Q Consensus 188 ~G~mQLyS~er~~--sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~-~~~~~~f~kk~~d-- 262 (1520)
.|.+|+.+.+-+- |-++---|.-=+-..+.+.+..-.++++.-+.. +...||-. ..+.+.|+-|.|.
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~--------~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN--------INELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred CCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhc--------ccceeeeecccceeeeeccCCCCc
Confidence 7999999998654 333322233334445555555555555543321 12233322 2223445555442
Q ss_pred ---ccCCCCCCCCcceeEEeccc--cceEEEEeccceEEEEeccchhh-hhhcccCCCceEEeeccCCCCcEEEEcCCCc
Q 000428 263 ---LFFPPDFADDFPVAMQISHK--YGLIYVITKLGLLFVYDLETAAA-VYRNRISPDPIFLTSEASSLGGFYAINRRGQ 336 (1520)
Q Consensus 263 ---~~fpp~~~~DFPv~mqvs~k--~g~iyviTK~G~l~lyDl~tg~~-i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~Gq 336 (1520)
++.| =.|-+++.-+. +-.+--+||+|++.+||..++.. +-.=-....+|=.++...+++=||+-|.+||
T Consensus 196 ~L~LrVP-----vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 196 RLGLRVP-----VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred cccceee-----eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 3332 23344555555 77888999999999999998743 3222334445555555666666999999999
Q ss_pred EEEEEeecCccccc
Q 000428 337 VLLATVNEATIVPF 350 (1520)
Q Consensus 337 Vl~v~i~~~~ivpy 350 (1520)
+-.+-++.-.++-.
T Consensus 271 l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGC 284 (412)
T ss_pred hheecccCceeecc
Confidence 98888877666543
No 218
>PRK00178 tolB translocation protein TolB; Provisional
Probab=83.44 E-value=67 Score=39.65 Aligned_cols=187 Identities=9% Similarity=0.107 Sum_probs=95.8
Q ss_pred ecCeeEEEEecCCCCeEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccC
Q 000428 34 ESDKYICVRETAPQNSVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMS 111 (1520)
Q Consensus 34 eSdk~icvre~~~~~~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~ 111 (1520)
.+++.+++....+..++.+.|+..... ++.-+-...+.--+|..+-||+-.. ..+...|.++|++++.. +..+-.
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~--~~g~~~Iy~~d~~~~~~-~~lt~~ 285 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLS--KDGNPEIYVMDLASRQL-SRVTNH 285 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEc--cCCCceEEEEECCCCCe-EEcccC
Confidence 355556666554333899999976532 1111111223556888777775422 11134688889887642 221111
Q ss_pred C-ceeEEEecc-CCeEEEEecC----cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCc
Q 000428 112 E-QVVFWKWIS-PKMLGVVTQT----SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQ 185 (1520)
Q Consensus 112 e-~vvfWkWis-~~~l~lVT~~----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~ 185 (1520)
. ....-.|-. .+.|++++.. .+|.|++++.. +..+.... .....=..++|++|++.++-. +
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~------~- 352 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVG-----NYNARPRLSADGKTLVMVHRQ------D- 352 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCC-----CCccceEECCCCCEEEEEEcc------C-
Confidence 1 122235653 3578888754 59999886432 44443211 111123568999999887632 1
Q ss_pred cccceEEEeec--ccc-cccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecC
Q 000428 186 LVKGNMQLFSV--DQQ-RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELG 248 (1520)
Q Consensus 186 ~i~G~mQLyS~--er~-~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~ 248 (1520)
|..+||.. +.+ ..++-++.......+ +.....+.|+...... .+|.++.++
T Consensus 353 ---~~~~l~~~dl~tg~~~~lt~~~~~~~p~~-----spdg~~i~~~~~~~g~----~~l~~~~~~ 406 (430)
T PRK00178 353 ---GNFHVAAQDLQRGSVRILTDTSLDESPSV-----APNGTMLIYATRQQGR----GVLMLVSIN 406 (430)
T ss_pred ---CceEEEEEECCCCCEEEccCCCCCCCceE-----CCCCCEEEEEEecCCc----eEEEEEECC
Confidence 23344443 332 222223222212222 2334577777654332 678888873
No 219
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=83.37 E-value=4 Score=36.60 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=40.2
Q ss_pred HHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1245 LVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1245 lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
+...|+|++|++..+++-.. .=++.+.++ .++.+|.+.|.+++|..++++.+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~---------~p~~~~~~~----------------~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR---------NPDNPEARL----------------LLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH---------TTTSHHHHH----------------HHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHH---------CCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899998888884211 111222222 67799999999999999999998666
Q ss_pred ccc
Q 000428 1325 RAH 1327 (1520)
Q Consensus 1325 rAh 1327 (1520)
..+
T Consensus 56 ~~~ 58 (68)
T PF14559_consen 56 PDN 58 (68)
T ss_dssp TTH
T ss_pred cCH
Confidence 664
No 220
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=82.94 E-value=13 Score=43.32 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=55.3
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhh-hcCCcchhHHHHH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQ-KVKEPKVDSELIY 1189 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~-~~~ep~id~~lv~ 1189 (1520)
..++++..-+||.+...|+..+|+.-+=|+ .|.+.+...-.++.+.|..++==.=+..|.+ .-.+|.+=+.|++
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 446667666899999999999999988776 4555555555555555555554444444444 2555555555555
Q ss_pred HHHhhCChhhHHHH
Q 000428 1190 AYAKIDRLGDIEEF 1203 (1520)
Q Consensus 1190 ~yAk~~~l~ele~f 1203 (1520)
+|--.|++.+.+.+
T Consensus 177 s~~L~gd~~~A~~l 190 (257)
T COG5010 177 SLLLRGDLEDAETL 190 (257)
T ss_pred HHHHcCCHHHHHHH
Confidence 55555555555444
No 221
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.82 E-value=12 Score=44.36 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=88.5
Q ss_pred HHHHHHHhccHHHHHHHHHHhCC-chh--HHHHHHHHh-----hcCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCc
Q 000428 501 VVAAFAERREFDKILIYSKQVGY-TPD--YLFLLQTIL-----RTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNL 572 (1520)
Q Consensus 501 vI~~~~e~g~f~~~~~Y~~~~~~-~~d--~~~lL~~~~-----~~np~~~~~la~~l~~~e~~~~~dv~~vv~~F~~~~l 572 (1520)
.|+|+.+.|+++.+-.-+++... .+| -.++...++ ..+.+.|.-+-+-|.+.-+..+.-.+...-+.|..|.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 55777788888877666665432 222 222222222 1345666777777766633223335566778999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCc-h-hHHHHhhCCCCC--CCChhHHHHHHHHhCcHHHHHHhc
Q 000428 573 IREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFP-N-VADAILANGMFS--HYDRPRIAQLCEKAGLYMRALQHY 644 (1520)
Q Consensus 573 ~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p-~-Vad~Il~~~~l~--~yD~~~IA~lCe~agL~e~Ale~Y 644 (1520)
+.|+.++|.+++..++.+...|-|+.-..-+...| . +-.+| +.+. |=+.|-+..+.++...|+|+-.-|
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l---~qL~~~~p~h~~~~~~~~~~~~FD~~~~ky 289 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL---SQLKQSNPNHPLVKDLAEKEAEFDRAVAKY 289 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH---HHCHHHTTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH---HHHHHhCCCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999976644444678876555555555 4 45566 4444 445689999999999999987655
No 222
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.80 E-value=1.6 Score=49.56 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=38.9
Q ss_pred CCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEE
Q 000428 265 FPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFL 318 (1520)
Q Consensus 265 fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~ 318 (1520)
+||=..+.=|+.|+....| +.+||..|.+|+||+.++++++.. +|=-||.-
T Consensus 6 ~P~i~Lgs~~~~l~~~~~~--Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~ 56 (219)
T PF07569_consen 6 LPPIVLGSPVSFLECNGSY--LLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLN 56 (219)
T ss_pred cCcEecCCceEEEEeCCCE--EEEEeCCCeEEEEECCCCeeccCC-ccHHHHhc
Confidence 3454445556777877777 999999999999999999999888 55444443
No 223
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=82.71 E-value=37 Score=41.18 Aligned_cols=172 Identities=19% Similarity=0.135 Sum_probs=94.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcc
Q 000428 1070 GEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDAT 1149 (1520)
Q Consensus 1070 A~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s 1149 (1520)
+.+..+.|-+|+|..=|++ +++|.++ .-...|.+++|+.++.....+..++. +.-++|-.
T Consensus 113 g~vllK~Gele~A~~DF~~----------vl~~~~s---------~~~~~eaqskl~~~~e~~~l~~ql~s-~~~~GD~~ 172 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQ----------VLQHEPS---------NGLVLEAQSKLALIQEHWVLVQQLKS-ASGSGDCQ 172 (504)
T ss_pred chhhhhcccHHHHHHHHHH----------HHhcCCC---------cchhHHHHHHHHhHHHHHHHHHHHHH-HhcCCchh
Confidence 3455578888888876666 2333211 11234667777777766644554444 44556655
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChh----hHH--HHhcCcCcchHHHHHhhhhccc
Q 000428 1150 QFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLG----DIE--EFILMPNVANLQNVGDRLYDDT 1223 (1520)
Q Consensus 1150 ~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~----ele--~fl~~~N~a~v~~vgd~~~eeg 1223 (1520)
+..+.+.-..+-.-|+.-.+-++ ..||-+.|... +|. .=|++.|.-....+...++.-|
T Consensus 173 ~ai~~i~~llEi~~Wda~l~~~R---------------akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPWDASLRQAR---------------AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred hHHHHHHHHHhcCcchhHHHHHH---------------HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence 44444433333333333222222 33444444432 221 1244555555567777777777
Q ss_pred cHHHHHHHHH----hhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhh
Q 000428 1224 LYEAAKIIYA----FISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEF 1280 (1520)
Q Consensus 1224 ~YeaAk~~y~----~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~ 1280 (1520)
+.+.+...+. --.+.-+-=.-|.++++..+.++.++++-..+-| -.|++.|+-
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~----t~cle~ge~ 294 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW----TECLEAGEK 294 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH
Confidence 7666544333 2223333344567789999999999998888888 445544443
No 224
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.67 E-value=12 Score=48.65 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=103.7
Q ss_pred CCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccc-c
Q 000428 122 PKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ-R 200 (1520)
Q Consensus 122 ~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~-~ 200 (1520)
-+.++.=....|..|++-...--.+++++..+ +++.|-...+..-++.+|-+ .|.+|+||.+.+ .
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYa----------DGsVqif~~~s~~~ 99 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYA----------DGSVQIFSLESEEI 99 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEec----------CceEEeeccCCCce
Confidence 34556656678889999433334567775543 78899999899999999987 999999999976 4
Q ss_pred ccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccc-----cccccCCCCCCCCcce
Q 000428 201 SQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKK-----QADLFFPPDFADDFPV 275 (1520)
Q Consensus 201 sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk-----~~d~~fpp~~~~DFPv 275 (1520)
.=-+-||-++-..+++++.. .++++-+.. +.+-+-+|=...|- |.-+ .++..|--
T Consensus 100 ~~tfngHK~AVt~l~fd~~G-----~rlaSGskD-----t~IIvwDlV~E~Gl--~rL~GHkd~iT~~~F~~-------- 159 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIG-----TRLASGSKD-----TDIIVWDLVGEEGL--FRLRGHKDSITQALFLN-------- 159 (888)
T ss_pred eeeecccccceEEEEEcccC-----ceEeecCCC-----ccEEEEEeccceee--EEeecchHHHhHHhccC--------
Confidence 55678899998877776541 145544444 34777776332221 2111 13344432
Q ss_pred eEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceE
Q 000428 276 AMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIF 317 (1520)
Q Consensus 276 ~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF 317 (1520)
--.++.-++|-+.|.+||++|-.|++..--...-|.
T Consensus 160 ------~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw 195 (888)
T KOG0306|consen 160 ------GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIW 195 (888)
T ss_pred ------CCeEEEEeccCceEEEEecccceeeeEEecccceEE
Confidence 223555577999999999999999887655544443
No 225
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=82.57 E-value=11 Score=40.37 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=43.6
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcc------hHHHHHHHHHhcCChhHHHHHHHHHhh
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDAT------QFLDVIRAAEDADVYHDLVRYLLMVRQ 1176 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s------~~~evi~~a~~a~~~e~Li~yL~m~r~ 1176 (1520)
-.....|+.+|..+...|+.++|+..|-++ ..++ .+..+-.++...|++++-++++..|..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346788999999999999999999999988 2222 233444556666777777777765543
No 226
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=14 Score=45.48 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=91.0
Q ss_pred HHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccc-cc
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLN-II 1291 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~-li 1291 (1520)
.--|-.++..++-+-|..-|...-+-+. +-+.+-.+++....-++||+--.-...+|.++.|.+|.-+ |-
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldp---------dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDP---------DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccCh---------hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 3344444555555555544444332211 2233333444444455676666666778888888887766 77
Q ss_pred cccccHHHHHHHHHh-------cCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHH
Q 000428 1292 VQVDDLEEVSEYYQN-------RGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIR 1364 (1520)
Q Consensus 1292 ~~~d~l~elv~~Ye~-------~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~ 1364 (1520)
++|+...-++..|-. .|+-.|+|+=-+.++.++.-- |=-.|..+-|.-..|++-++.+.|.+.+-..+-
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-- 353 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-- 353 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 788888777777764 467788888777777666441 112344555566677777888777776644433
Q ss_pred HHHhhcchHHHHHHHH
Q 000428 1365 ACDEQQHWKELTYLYI 1380 (1520)
Q Consensus 1365 ~ce~~~lW~E~vfLy~ 1380 (1520)
|+....|.|+-+-+-
T Consensus 354 -~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 354 -CEIRRTLREAQLALK 368 (486)
T ss_pred -cchHHHHHHHHHHHH
Confidence 555555555555544
No 227
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=81.87 E-value=6.2 Score=38.45 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc----C-------HHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS----N-------WAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~----N-------~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
...|..++..|+|+.|...|..+- + +..+|.+|.++|++++|.+..+++
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 457778888888888888887543 1 567789999999999999888764
No 228
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=81.37 E-value=8.1 Score=50.49 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=81.3
Q ss_pred cCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHH
Q 000428 1076 AQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLD 1153 (1520)
Q Consensus 1076 ~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~e 1153 (1520)
..+|--|..+|.+.+.-++|-..|.+-. ..-- --+.+||..|...+..|..+||.+.|..| -||+|+-.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~-------~~~~--l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEAS-------KIDP--LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHH-------hcch--hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 4456788999999888888877766632 1112 24679999999999999999999999998 67777542
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHH--Hh------cCcCcchHHHHHhhhhccccH
Q 000428 1154 VIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEE--FI------LMPNVANLQNVGDRLYDDTLY 1225 (1520)
Q Consensus 1154 vi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~--fl------~~~N~a~v~~vgd~~~eeg~Y 1225 (1520)
.. +|+.++-+.|+-...+. ++ ...|...++..|.-...+|+.
T Consensus 721 ~~------------------------------Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 721 MT------------------------------ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HH------------------------------HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 22 23333333333222222 32 236666778888888888888
Q ss_pred HHHHHHHHh
Q 000428 1226 EAAKIIYAF 1234 (1520)
Q Consensus 1226 eaAk~~y~~ 1234 (1520)
++|-.+|+.
T Consensus 771 ~~Aaecf~a 779 (799)
T KOG4162|consen 771 KQAAECFQA 779 (799)
T ss_pred HHHHHHHHH
Confidence 877777764
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=81.18 E-value=28 Score=38.83 Aligned_cols=166 Identities=18% Similarity=0.149 Sum_probs=83.2
Q ss_pred CHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHHHHH
Q 000428 1078 LYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFLDVI 1155 (1520)
Q Consensus 1078 L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~evi 1155 (1520)
+|.+|...+.+ |+|.+|+..+-+-... ... .---++.++.+|.++...|+..+|+..|-+= ..|.+- .+.
T Consensus 8 lY~~a~~~~~~-g~y~~Ai~~f~~l~~~----~P~--s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~ 79 (203)
T PF13525_consen 8 LYQKALEALQQ-GDYEEAIKLFEKLIDR----YPN--SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KAD 79 (203)
T ss_dssp HHHHHHHHHHC-T-HHHHHHHHHHHHHH-----TT--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHH----CCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chh
Confidence 45566666655 6666666655432111 111 1123456778899999999999998885432 222221 122
Q ss_pred HHHHhcCChhHHHHHHHHHhhh---cCCcchhH-------HHHHHHHhhCChhhHHHHhcCcCc--chH-HHHHhhhhcc
Q 000428 1156 RAAEDADVYHDLVRYLLMVRQK---VKEPKVDS-------ELIYAYAKIDRLGDIEEFILMPNV--ANL-QNVGDRLYDD 1222 (1520)
Q Consensus 1156 ~~a~~a~~~e~Li~yL~m~r~~---~~ep~id~-------~lv~~yAk~~~l~ele~fl~~~N~--a~v-~~vgd~~~ee 1222 (1520)
++.+..| .-++.+.+.. .+|+.--. .++.-|=.+...++....|..... +.- ..+|+.++..
T Consensus 80 ~A~Y~~g-----~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 80 YALYMLG-----LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-----HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHH-----HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222211 1222222222 22221111 133333334444444444333211 111 4499999999
Q ss_pred ccHHHHHHHHHhhcC-----------HHHHHHHHHHhcCHHHHHH
Q 000428 1223 TLYEAAKIIYAFISN-----------WAKLAVTLVKLKQFQGAVD 1256 (1520)
Q Consensus 1223 g~YeaAk~~y~~~~N-----------~~kLA~~lv~L~~y~~Ave 1256 (1520)
|.|.+|..-|..+-. ...|+..|.++|..+.|-.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999887652 2456888999998885443
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=81.08 E-value=46 Score=41.15 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=68.2
Q ss_pred chhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcC-CHHHHHHHHHh--cCCcHHHHHHHHHhhhhHHHHHHH
Q 000428 1036 FNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQ-LYEEAFAIFKK--FNLNVQAVNVLLDNIRSIERAVEF 1112 (1520)
Q Consensus 1036 ~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~-L~EEA~~LYkK--~~~~~~Ai~vLi~~~~~~~~A~e~ 1112 (1520)
.-+.|||+-+=.--|++..-..++.+.+-...+++. .+. .+--||.+.++ -|..++|.+++.+-. .
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~---~~~i~~~yafALnRrn~~gdre~Al~il~~~l--------~ 210 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVAN---QHNIKFQYAFALNRRNKPGDREKALQILLPVL--------E 210 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhc---chHHHHHHHHHHhhcccCCCHHHHHHHHHHHH--------h
Confidence 456678886645557777777777777554444332 111 12378999884 477888998887621 2
Q ss_pred HHHhCChhHHHHHHHHHHhh---------ccHHHHHHHHHhc--CCcchHH
Q 000428 1113 AFRVEEDAVWSQVAKAQLRE---------GLVSDAIESFIRA--DDATQFL 1152 (1520)
Q Consensus 1113 Aek~~~~eVw~~lgka~l~~---------~~v~eAI~~Yika--~d~s~~~ 1152 (1520)
......||+|..+|..|-+. .....||..|-|+ -+++.|.
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 23567899999999999662 2466778888776 3344444
No 231
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=81.05 E-value=56 Score=39.91 Aligned_cols=180 Identities=18% Similarity=0.293 Sum_probs=119.2
Q ss_pred cceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEecc----------CCCCccc
Q 000428 77 SRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIE----------GDSEPVK 146 (1520)
Q Consensus 77 ~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~----------~~~~P~k 146 (1520)
+..+|+-.. +.++.|.|.|.-.|+-+..+.++.+|.=-|. +-+-|..+-+..+|..+|. ....|.-
T Consensus 56 SSLvaiV~~---~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm-Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 56 SSLVAIVSI---KQPRKLKVVHFKKKTTICEIFFPTSILAVRM-NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred cceeEEEec---CCCceEEEEEcccCceEEEEecCCceEEEEE-ccceEEEEEcccEEEEecccceeehhhhccCCCccc
Confidence 346666642 3368899999999999999999999877664 3445555666669999983 1346666
Q ss_pred hhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccccc-ccccchhhccceeeecCCCCCCceE
Q 000428 147 MFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQR-SQALEAHAASFAQFKVPGNENPSVL 225 (1520)
Q Consensus 147 ~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~-sQ~ieghaa~F~~~~~~g~~~~~~l 225 (1520)
+.+-.++.+||-+.- |++ +-.|.++||+...-+ --.|++|-+.-+-+.+. +..++
T Consensus 132 l~AlS~n~~n~ylAy----------------p~s-----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs---~~G~l 187 (391)
T KOG2110|consen 132 LCALSPNNANCYLAY----------------PGS-----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFS---PDGTL 187 (391)
T ss_pred eEeeccCCCCceEEe----------------cCC-----CCCceEEEEEcccceeeeEEEecCCceeEEEEC---CCCCE
Confidence 777777777765432 222 338999999998753 35688998888877653 44678
Q ss_pred EEEEEecCCCCcccceEEEEecCCCCCCCCccc-----ccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEec
Q 000428 226 ISFATKSFNAGQVTSKLHVIELGAQPGKPSFTK-----KQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDL 300 (1520)
Q Consensus 226 ~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~k-----k~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl 300 (1520)
++-|.-+.+ =++|.-+....---.|++ .-..+-|.|+ -.++-..+.-|-||+|-+
T Consensus 188 lATASeKGT------VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d--------------s~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 188 LATASEKGT------VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD--------------SQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEEeccCce------EEEEEEcCCccEeeeeeCCceeeEEEEEEECCC--------------CCeEEEecCCCeEEEEEe
Confidence 887765433 377776633211112433 1122334433 347778888999999988
Q ss_pred cchh
Q 000428 301 ETAA 304 (1520)
Q Consensus 301 ~tg~ 304 (1520)
++..
T Consensus 248 ~~~~ 251 (391)
T KOG2110|consen 248 EKVS 251 (391)
T ss_pred cccc
Confidence 7654
No 232
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.04 E-value=13 Score=43.09 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=105.3
Q ss_pred chHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhh
Q 000428 1210 ANLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFR 1281 (1520)
Q Consensus 1210 a~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~r 1281 (1520)
.++.+-|++||--..|..|...|+..- =|-+=|.||.++++|+.+-+-+|+|-.-.. .
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--------------N 76 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--------------N 76 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--------------H
Confidence 356778999999999999999998653 344558888888888877777777432210 1
Q ss_pred HHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccc---cchhHHHHHHHhccChhhhHHHHHHHHHhhc
Q 000428 1282 LAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAH---MGIFTELGVLYARYRYEKLMEHIKLFSTRLN 1358 (1520)
Q Consensus 1282 LA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh---~~~fTeLailyAky~pekLmehlk~y~~~iN 1358 (1520)
++.- .-.+...+-....|++||..|.++..+-|.| +|.....+...||+.|=.+++.-|. ++.+.
T Consensus 77 ~vk~-----------h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri-~Q~~E 144 (284)
T KOG4642|consen 77 LVKA-----------HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI-RQELE 144 (284)
T ss_pred HHHH-----------HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH-HHHhh
Confidence 1111 0133344555678999999999998777777 6666668899999999998887665 77777
Q ss_pred hHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHh
Q 000428 1359 IPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMN 1394 (1520)
Q Consensus 1359 i~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~ 1394 (1520)
+|.-+....+...=.++.-. ...|+.|.++.+|-.
T Consensus 145 l~~yl~slie~~~~~~~s~~-~~N~~sde~~k~~q~ 179 (284)
T KOG4642|consen 145 LHSYLESLIEGDRERELSEW-QENGESDEHLKTMQV 179 (284)
T ss_pred HHHHHHHHhccchhhHHHHH-HHcCCChHHHhhhcc
Confidence 77665554443322222211 123567777766543
No 233
>PRK04841 transcriptional regulator MalT; Provisional
Probab=81.00 E-value=56 Score=44.17 Aligned_cols=139 Identities=9% Similarity=0.027 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCC------cch----HHHHHHHHHhcCChhHHHHHHHHHhhhcCCc--------ch
Q 000428 1122 WSQVAKAQLREGLVSDAIESFIRADD------ATQ----FLDVIRAAEDADVYHDLVRYLLMVRQKVKEP--------KV 1183 (1520)
Q Consensus 1122 w~~lgka~l~~~~v~eAI~~Yika~d------~s~----~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep--------~i 1183 (1520)
+..+|..+...|+.++|...+-++-. +.. +..........|++++-.+++..+....... ..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 44567777777888888777666511 111 1123334555677777777777665431111 11
Q ss_pred hHHHHHHHHhhCChhhHHHHhcCcCcch----------HHHHHhhhhccccHHHHHHHHHhhcC--------------HH
Q 000428 1184 DSELIYAYAKIDRLGDIEEFILMPNVAN----------LQNVGDRLYDDTLYEAAKIIYAFISN--------------WA 1239 (1520)
Q Consensus 1184 d~~lv~~yAk~~~l~ele~fl~~~N~a~----------v~~vgd~~~eeg~YeaAk~~y~~~~N--------------~~ 1239 (1520)
+......+...|+.+....++....... ....|..+...|+++.|...++..-. ..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1112233445667777666653311110 12345555666666666666554321 12
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 000428 1240 KLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1240 kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
-+|.+|...|+.++|.+..++
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 235666667777666666666
No 234
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=80.27 E-value=20 Score=46.43 Aligned_cols=150 Identities=16% Similarity=0.229 Sum_probs=108.1
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHH
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLA 1283 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA 1283 (1520)
+..-.-+|+|.+.|.....+.+++- .-+-.+.++..+|+-++|.+..|.+-..+.=..||=..
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv--------- 80 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV--------- 80 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH---------
Confidence 3444567889999988887777664 33445899999999999999999876554433333221
Q ss_pred HhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHH-H
Q 000428 1284 QICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPK-L 1362 (1520)
Q Consensus 1284 ~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K-~ 1362 (1520)
+.-.|-+...|+|+|..|..|+.++.....|...|+. |.-+++.|........ +
T Consensus 81 ----------------~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl---------LQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 81 ----------------LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL---------LQIQMRDYEGYLETRNQL 135 (700)
T ss_pred ----------------HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH---------HHHHHHhhhhHHHHHHHH
Confidence 2234556779999999999999999998888888888 4555666554442222 2
Q ss_pred H-HHHHhhcchHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1363 I-RACDEQQHWKELTYLYIQYDEFDNAATTIMNH 1395 (1520)
Q Consensus 1363 i-~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h 1395 (1520)
+ -...++-.|-...--+.-.|++..|+.++-+-
T Consensus 136 Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33456777988888888899999999877665
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.09 E-value=21 Score=42.18 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=100.7
Q ss_pred HHHHHHhccHHHHHHHHHHhCC-ch--hHHHHHHHHhhcCchhHHHHHHHHHhc-----CCCCCCCHHHHHHHHHhCCcH
Q 000428 502 VAAFAERREFDKILIYSKQVGY-TP--DYLFLLQTILRTDPQGAVNFALMMSQM-----EGGCPVDYNTITDLFLQRNLI 573 (1520)
Q Consensus 502 I~~~~e~g~f~~~~~Y~~~~~~-~~--d~~~lL~~~~~~np~~~~~la~~l~~~-----e~~~~~dv~~vv~~F~~~~l~ 573 (1520)
++|.-+.|+++.+-.|+..... ++ .+...+..+..-+.+.+...+....+. ..-+..+.....+.++...++
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L 84 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQL 84 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHH
Confidence 4556667777776676666542 22 122223322222333333332221111 123467888889999999999
Q ss_pred HHHHHHHHHhhcCCC-C-C----CchhhhHHHHhhhccCchhHHHHhhCCCCCCC----------ChhHHHHHHHHhCcH
Q 000428 574 REATAFLLDVLKPNL-P-E----HGFLQTKVLEINLVTFPNVADAILANGMFSHY----------DRPRIAQLCEKAGLY 637 (1520)
Q Consensus 574 ~e~t~~Ll~~lk~n~-~-e----~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~y----------D~~~IA~lCe~agL~ 637 (1520)
.|+-++..=.-.... + . -..+++||- ++..++.+-+.|++..++-.= -+-..|++|.++|.+
T Consensus 85 ~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~ 162 (352)
T PF02259_consen 85 VELEEIIELKSNLSQNPQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF 162 (352)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc
Confidence 998888763312111 1 0 113444542 334445777777765432111 256789999999999
Q ss_pred HHHHHhcCCCcchhHHhhccccCChhhHHHHhhc----CChHhHHHHHHHHHHhhccch
Q 000428 638 MRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGT----LSREWALECMKDLLLVNLRGN 692 (1520)
Q Consensus 638 e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~----l~~~~~~~~l~~~l~~n~~~n 692 (1520)
+.|......+.... .......|.+.+++..- ....+|+..|+++++.....+
T Consensus 163 ~~A~~~l~~~~~~~---~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 163 QLALSALNRLFQLN---PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred HHHHHHHHHHhccC---CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 99987544322110 01122245555444333 455889999988887544433
No 236
>PRK01742 tolB translocation protein TolB; Provisional
Probab=79.85 E-value=1e+02 Score=38.32 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=81.4
Q ss_pred cCeeEEEEecCCC--C-eEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhc--cccc
Q 000428 35 SDKYICVRETAPQ--N-SVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKA--KIKS 107 (1520)
Q Consensus 35 Sdk~icvre~~~~--~-~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~--klks 107 (1520)
+.|...|....++ . ++.+.|....+. .++-.-..-+...+|..+.||.-+. ......|.++|+++.+ ++.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~--~~~~~~i~i~dl~tg~~~~l~~ 245 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSF--ENKKSQLVVHDLRSGARKVVAS 245 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEe--cCCCcEEEEEeCCCCceEEEec
Confidence 4566667665432 2 888888643331 1111112234556777777776432 2224579999998864 3433
Q ss_pred cccCCceeEEEeccC-CeEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCC
Q 000428 108 HQMSEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAE 182 (1520)
Q Consensus 108 ~~~~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~ 182 (1520)
+ ......=+|-.+ +.|+.+.. ..+|.|++++. .+.++.. + ...+.+..-++|++|++.++-.
T Consensus 246 ~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~----~~~~~~~~wSpDG~~i~f~s~~----- 312 (429)
T PRK01742 246 F--RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-TPSQLTS-G----AGNNTEPSWSPDGQSILFTSDR----- 312 (429)
T ss_pred C--CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC-CeEeecc-C----CCCcCCEEECCCCCEEEEEECC-----
Confidence 2 222223366543 46777653 24788887542 3333332 1 2345567789999998887522
Q ss_pred CCccccceEEEeeccc
Q 000428 183 RPQLVKGNMQLFSVDQ 198 (1520)
Q Consensus 183 ~~~~i~G~mQLyS~er 198 (1520)
.|..|+|.++.
T Consensus 313 -----~g~~~I~~~~~ 323 (429)
T PRK01742 313 -----SGSPQVYRMSA 323 (429)
T ss_pred -----CCCceEEEEEC
Confidence 46679998753
No 237
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=79.62 E-value=48 Score=45.03 Aligned_cols=143 Identities=21% Similarity=0.177 Sum_probs=98.3
Q ss_pred hCChhHHHHHHHHHHhhccHHHHHHHHHhc--CCcchHH---HHHHHHHhcCChhHHHHHHHHHhhh-----cCCcchhH
Q 000428 1116 VEEDAVWSQVAKAQLREGLVSDAIESFIRA--DDATQFL---DVIRAAEDADVYHDLVRYLLMVRQK-----VKEPKVDS 1185 (1520)
Q Consensus 1116 ~~~~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~~~---evi~~a~~a~~~e~Li~yL~m~r~~-----~~ep~id~ 1185 (1520)
..-.-.|.-||..|.+..+..-|-.+|-|| -|++.+. ....+.-+...+|+-..-+..+-++ .++..+.
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~- 567 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ- 567 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh-
Confidence 345678999999999977888899999998 5555554 6666777777777655554322221 1222222
Q ss_pred HHHHHHHhhCChhhH-HHHhc----CcCcchH-HHHHhhhhccccHHHHHHHHHhhc------CHH--HHHHHHHHhcCH
Q 000428 1186 ELIYAYAKIDRLGDI-EEFIL----MPNVANL-QNVGDRLYDDTLYEAAKIIYAFIS------NWA--KLAVTLVKLKQF 1251 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~el-e~fl~----~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~------N~~--kLA~~lv~L~~y 1251 (1520)
++..|-+.+++... .+|=+ +|+..+. ...|+.|-+.|.|.+|.+.|++++ -|. +.|...|-+|+|
T Consensus 568 -rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 568 -RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred -ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 34444455555544 55522 3666555 779999999999999999997776 222 348888999999
Q ss_pred HHHHHHHHH
Q 000428 1252 QGAVDAARK 1260 (1520)
Q Consensus 1252 ~~Ave~AkK 1260 (1520)
.+|+++-.+
T Consensus 647 keald~l~~ 655 (1238)
T KOG1127|consen 647 KEALDALGL 655 (1238)
T ss_pred HHHHHHHHH
Confidence 999998765
No 238
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=79.00 E-value=12 Score=46.42 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=60.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhcc--ChhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHH
Q 000428 1300 VSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARY--RYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTY 1377 (1520)
Q Consensus 1300 lv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky--~pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vf 1377 (1520)
+++.|-..+.-.++|+++.+++..... ..+|=.+.|+| +.++.-.+++.-...+++. +.+-..|..++-
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~----d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-----P~~f~~W~~La~ 276 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQ----DSELLNLQAEFLLSKKKYELALEIAKKAVELS-----PSEFETWYQLAE 276 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhHHHHHHHHH
Confidence 445566677888999999999843332 24555555555 2333344555545555555 667888999999
Q ss_pred HHHhhccHHHHHHHHHhcC
Q 000428 1378 LYIQYDEFDNAATTIMNHS 1396 (1520)
Q Consensus 1378 Ly~~~~e~d~A~~~mi~h~ 1396 (1520)
.|++.|+|++|+.++-.=|
T Consensus 277 ~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 277 CYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHhcCc
Confidence 9999999999998776553
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=78.45 E-value=1.9e+02 Score=36.27 Aligned_cols=230 Identities=16% Similarity=0.196 Sum_probs=115.4
Q ss_pred cCeeEEEEecCCC-----C-eEEEEEcCCCCCccccccCcc-cccccCC----cc--eeeeeccCCCCCCCcEEEEehhh
Q 000428 35 SDKYICVRETAPQ-----N-SVVIIDMNQPMQPLRRPITAD-SALMNPN----SR--ILALKAQLPGTTQDHLQIFNIEL 101 (1520)
Q Consensus 35 Sdk~icvre~~~~-----~-~v~Ivdl~~~~~~~r~pi~Ad-sAimnP~----~~--iiAlra~~~~~~g~~lQiFnle~ 101 (1520)
+.|-+.|....+. . ++.++|.. +.++ ++++.. ..++.|. .+ .+|.-+. ......|.+.++++
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~d-G~~~--~~lt~~~~~~~sP~wSPDG~~~~~~y~S~--~~g~~~I~~~~l~~ 220 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYD-GQNL--RPLTQEHSLSITPTWMHIGSGFPYLYVSY--KLGVPKIFLGSLEN 220 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCC-CCCc--eEcccCCCCcccceEccCCCceEEEEEEc--cCCCceEEEEECCC
Confidence 5566666665431 2 88899964 3332 334433 3456665 32 2322211 01134677778876
Q ss_pred hccccccccCCceeEEEeccC-CeEEEEecC----cEEE--EeccC--CCCccchhhcccCCCCCeEEEeeeCCCCCeEE
Q 000428 102 KAKIKSHQMSEQVVFWKWISP-KMLGVVTQT----SVYH--WSIEG--DSEPVKMFDRTANLTNNQIINYKCDPTEKWLV 172 (1520)
Q Consensus 102 k~klks~~~~e~vvfWkWis~-~~l~lVT~~----aVyH--W~i~~--~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~ 172 (1520)
.+.-+=-.++-....=+|-.+ +.|+++... .+|. |++.+ ...|.+++..... -..++..++|++|++
T Consensus 221 g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~----~~~~p~wSPDG~~La 296 (428)
T PRK01029 221 PAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG----TQGNPSFSPDGTRLV 296 (428)
T ss_pred CCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC----CcCCeEECCCCCEEE
Confidence 643222223223333367533 478887742 4555 66643 2466766643211 123568899999999
Q ss_pred EEeccCCCCCCCccccceEEEeeccc----ccccccchhhc--cceeeecCCCCCCceEEEEEEecCCCCcccceEEEEe
Q 000428 173 LIGIAPGSAERPQLVKGNMQLFSVDQ----QRSQALEAHAA--SFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIE 246 (1520)
Q Consensus 173 l~Gi~~~~~~~~~~i~G~mQLyS~er----~~sQ~ieghaa--~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~E 246 (1520)
.+.-. .|..|||-+.- +..+.+-.+.. ....+ +...+.++|+.+.... ..|++++
T Consensus 297 f~s~~----------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w-----SPDG~~Laf~~~~~g~----~~I~v~d 357 (428)
T PRK01029 297 FVSNK----------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW-----SPDGKKIAFCSVIKGV----RQICVYD 357 (428)
T ss_pred EEECC----------CCCceEEEEECcccccceEEeccCCCCccceeE-----CCCCCEEEEEEcCCCC----cEEEEEE
Confidence 86522 35567776532 22222322211 12222 2334567777664332 6799998
Q ss_pred cCCCCCCCCcccccccccCCCCCCCCcceeEEeccccc-eEEEEecc--ceEEEEeccchh
Q 000428 247 LGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYG-LIYVITKL--GLLFVYDLETAA 304 (1520)
Q Consensus 247 i~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g-~iyviTK~--G~l~lyDl~tg~ 304 (1520)
+... .. ..+...+ . ..-+..+|+.-. ++|.-+.. +-|+++|+.+|.
T Consensus 358 l~~g--~~------~~Lt~~~-~---~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 358 LATG--RD------YQLTTSP-E---NKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCC--Ce------EEccCCC-C---CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8542 11 0111111 0 112345665433 44444432 467788887775
No 240
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.04 E-value=5.5 Score=44.91 Aligned_cols=88 Identities=24% Similarity=0.314 Sum_probs=64.6
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc-------------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcch
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS-------------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAE 1278 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~-------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~ 1278 (1520)
+..=|+.+|..|+|+.|-.-|+..- -|..=|-++.++++|..||+.+.||-. .|.--..|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kA----- 170 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKA----- 170 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHH-----
Confidence 4557999999999999999998654 344448899999999999999988542 23111111
Q ss_pred hhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1279 EFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1279 e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
|+.=...|+...+|++++.=|++.+.++
T Consensus 171 ------------------l~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 171 ------------------LERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred ------------------HHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 2223367999999999999998886444
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.83 E-value=64 Score=39.56 Aligned_cols=129 Identities=23% Similarity=0.353 Sum_probs=84.0
Q ss_pred HHHhhhhccccHHHHHHHHHhhcCHH--------------HHHHHHHHhcCHHHHHHHHHHhCCh------hhHH-----
Q 000428 1214 NVGDRLYDDTLYEAAKIIYAFISNWA--------------KLAVTLVKLKQFQGAVDAARKANSA------KTWK----- 1268 (1520)
Q Consensus 1214 ~vgd~~~eeg~YeaAk~~y~~~~N~~--------------kLA~~lv~L~~y~~Ave~AkKa~~~------k~wk----- 1268 (1520)
.+|.-....+-|+.+..+|++..||+ .|++.+-.+++|++|.-.+.||-.. +-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666666666666666665443 3477777777777777776665321 2232
Q ss_pred -----------------HHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchh
Q 000428 1269 -----------------EVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIF 1331 (1520)
Q Consensus 1269 -----------------~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~f 1331 (1520)
++.+.|=|+ .+||-+.| +-.+++-.+-.+.+.|-++|.-+-+..=||.+ ||+-
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea--~klal~~G-dra~~arc~~~~aDIyR~~gd~e~af~rYe~A-------m~~m 276 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEA--MKLALQHG-DRALQARCLLCFADIYRSRGDLERAFRRYEQA-------MGTM 276 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHH--HHHHHHhC-ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH-------HHHH
Confidence 236667654 47777777 66777888889999999999999999999988 4444
Q ss_pred HHH----HHHHhccChhhhHHHHHH
Q 000428 1332 TEL----GVLYARYRYEKLMEHIKL 1352 (1520)
Q Consensus 1332 TeL----ailyAky~pekLmehlk~ 1352 (1520)
+++ |..-|=-...|-.+.+|.
T Consensus 277 ~~~gdrmgqv~al~g~Akc~~~~r~ 301 (518)
T KOG1941|consen 277 ASLGDRMGQVEALDGAAKCLETLRL 301 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 433 333333345555666665
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=77.70 E-value=1.4e+02 Score=37.16 Aligned_cols=195 Identities=9% Similarity=0.105 Sum_probs=100.6
Q ss_pred eeecCeeEEEEecCCCCeEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccc
Q 000428 32 TMESDKYICVRETAPQNSVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQ 109 (1520)
Q Consensus 32 t~eSdk~icvre~~~~~~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~ 109 (1520)
+-.+.+.+.+....++.+|.+.|+..... ++..+-..-+...+|..+-||+-.. ..+...|.++|++++. ++..+
T Consensus 210 SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~--~~g~~~Iy~~d~~~~~-~~~Lt 286 (435)
T PRK05137 210 SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLS--QGGNTDIYTMDLRSGT-TTRLT 286 (435)
T ss_pred CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEe--cCCCceEEEEECCCCc-eEEcc
Confidence 33455666666555445999999975432 1112212234557888876665421 1112446666777653 22222
Q ss_pred cCC-ceeEEEec-cCCeEEEEecC----cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCC
Q 000428 110 MSE-QVVFWKWI-SPKMLGVVTQT----SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAER 183 (1520)
Q Consensus 110 ~~e-~vvfWkWi-s~~~l~lVT~~----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~ 183 (1520)
-.. ....=.|- +.+.|+.++.. .+|.|+++|. .+..++.- +..+.+...++|++|++.+... .
T Consensus 287 ~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt~~-----~~~~~~~~~SpdG~~ia~~~~~----~- 355 (435)
T PRK05137 287 DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRISFG-----GGRYSTPVWSPRGDLIAFTKQG----G- 355 (435)
T ss_pred CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEeecC-----CCcccCeEECCCCCEEEEEEcC----C-
Confidence 111 12223554 34568888754 5999998653 34445432 1233455688999999988743 1
Q ss_pred CccccceEEEeeccccccccc-chhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 184 PQLVKGNMQLFSVDQQRSQAL-EAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 184 ~~~i~G~mQLyS~er~~sQ~i-eghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
+ ...+.++..+.+..+.+ .++......+ ++..+.+.|+....... ...+|.+++++.
T Consensus 356 -~--~~~i~~~d~~~~~~~~lt~~~~~~~p~~-----spDG~~i~~~~~~~~~~-~~~~L~~~dl~g 413 (435)
T PRK05137 356 -G--QFSIGVMKPDGSGERILTSGFLVEGPTW-----APNGRVIMFFRQTPGSG-GAPKLYTVDLTG 413 (435)
T ss_pred -C--ceEEEEEECCCCceEeccCCCCCCCCeE-----CCCCCEEEEEEccCCCC-CcceEEEEECCC
Confidence 1 12455555543333333 3321111112 22345666665432210 014799998843
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.51 E-value=89 Score=36.73 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHH
Q 000428 1237 NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISL 1316 (1520)
Q Consensus 1237 N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~L 1316 (1520)
-|-+.|-.+..+.+|.+++++++||. .--+++|..+-|.. -|+.-.+. .++-+.+++++|
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs---------~lY~E~GspdtAAm----------aleKAak~-lenv~Pd~Alql 132 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKAS---------ELYVECGSPDTAAM----------ALEKAAKA-LENVKPDDALQL 132 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH---------HHHHHhCCcchHHH----------HHHHHHHH-hhcCCHHHHHHH
Confidence 33344555555666666666666532 12234444444332 12333333 457789999999
Q ss_pred HHhhc----CccccccchhHHHHHHHhcc--ChhhhHHHHHHHHHhhchHHHHHHHHh-h---cchHHHHHHHHhhccHH
Q 000428 1317 MESGL----GLERAHMGIFTELGVLYARY--RYEKLMEHIKLFSTRLNIPKLIRACDE-Q---QHWKELTYLYIQYDEFD 1386 (1520)
Q Consensus 1317 le~gl----~lerAh~~~fTeLailyAky--~pekLmehlk~y~~~iNi~K~i~~ce~-~---~lW~E~vfLy~~~~e~d 1386 (1520)
|++++ .-+|.||+ .||.-..++- +-+|..|.-..|.+.+++-+- |+. + ..+.-++.+|....+|-
T Consensus 133 Yqralavve~~dr~~ma--~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---~~~y~~~~k~~va~ilv~L~~~Dyv 207 (308)
T KOG1585|consen 133 YQRALAVVEEDDRDQMA--FELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---CDAYNSQCKAYVAAILVYLYAHDYV 207 (308)
T ss_pred HHHHHHHHhccchHHHH--HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH---HhhcccHHHHHHHHHHHHhhHHHHH
Confidence 99996 45688887 3333322221 244555555555555555422 222 2 23555555555555675
Q ss_pred HHHHHHHhcC-chhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCcchHHHHHHH-HhhcCCHH
Q 000428 1387 NAATTIMNHS-PEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNV-LALRVDHT 1447 (1520)
Q Consensus 1387 ~A~~~mi~h~-~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~-l~~rlD~~ 1447 (1520)
.|=.+.-+.+ -.+|-.. ......| +.+.+|=+.-|+.+.+.+.+ ....+|++
T Consensus 208 ~aekc~r~~~qip~f~~s------ed~r~le---nLL~ayd~gD~E~~~kvl~sp~~r~MDne 261 (308)
T KOG1585|consen 208 QAEKCYRDCSQIPAFLKS------EDSRSLE---NLLTAYDEGDIEEIKKVLSSPTVRNMDNE 261 (308)
T ss_pred HHHHHhcchhcCccccCh------HHHHHHH---HHHHHhccCCHHHHHHHHcChHhhhhhHH
Confidence 5544443321 1111110 1122223 68889999999999999887 66778876
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.31 E-value=20 Score=44.79 Aligned_cols=159 Identities=17% Similarity=0.246 Sum_probs=96.7
Q ss_pred HhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHH
Q 000428 1047 IKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVA 1126 (1520)
Q Consensus 1047 ~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lg 1126 (1520)
-..+.+|+++|++-..--+.-++-+.=--|.|...|-.+.+.-+.-+.|++.|.. ++.|+.. +-++
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~-------il~ft~y--D~ec----- 416 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL-------ILQFTNY--DIEC----- 416 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH-------HHHhccc--cHHH-----
Confidence 4568899999998877666666655555689999999999997778888887765 4444443 2121
Q ss_pred HHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcC
Q 000428 1127 KAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILM 1206 (1520)
Q Consensus 1127 ka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~ 1206 (1520)
+..+--|+| ..|...+ ..... -++=++|+||..
T Consensus 417 ---------~n~v~~fvK----q~Y~qaL----s~~~~------------------------------~rLlkLe~fi~e 449 (549)
T PF07079_consen 417 ---------ENIVFLFVK----QAYKQAL----SMHAI------------------------------PRLLKLEDFITE 449 (549)
T ss_pred ---------HHHHHHHHH----HHHHHHH----hhhhH------------------------------HHHHHHHHHHHh
Confidence 122223444 1111111 00001 122334566554
Q ss_pred cCc----------chHHHHHhhhhccccHHHHHHHHH--------hhcCHHHHHHHHHHhcCHHHHHHHHHHhC-ChhhH
Q 000428 1207 PNV----------ANLQNVGDRLYDDTLYEAAKIIYA--------FISNWAKLAVTLVKLKQFQGAVDAARKAN-SAKTW 1267 (1520)
Q Consensus 1207 ~N~----------a~v~~vgd~~~eeg~YeaAk~~y~--------~~~N~~kLA~~lv~L~~y~~Ave~AkKa~-~~k~w 1267 (1520)
.+. ++--+=++.+|..|+|..+-. |+ |..-|-=++.|+...++|++|-++-++-. +.++|
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~-ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~ 528 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYL-YSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMR 528 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhH
Confidence 222 222334677889999987753 33 12244445899999999999999998866 44455
No 245
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.63 E-value=3.3 Score=33.55 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
|..||.+|.+.|+|++|+++.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 56799999999999999999988
No 246
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.40 E-value=1.1e+02 Score=35.87 Aligned_cols=146 Identities=14% Similarity=0.247 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHh-hchHHHHHHHHhhc-------
Q 000428 1299 EVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTR-LNIPKLIRACDEQQ------- 1370 (1520)
Q Consensus 1299 elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~-iNi~K~i~~ce~~~------- 1370 (1520)
+..++|- ++...+++..|++++.+ .-|||-|| --|||+ ++-...|.+. -++.|.|..=|++.
T Consensus 79 eA~~cyk-k~~~~eAv~cL~~aieI-yt~~Grf~----~aAk~~----~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 79 EAANCYK-KVDPEEAVNCLEKAIEI-YTDMGRFT----MAAKHH----IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHhh-ccChHHHHHHHHHHHHH-HHhhhHHH----HHHhhh----hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 3445554 55888888888877432 22344444 234444 2223344444 34555554433322
Q ss_pred -------chHHHHHHHHhhccHHHHHHH---HHhcCch----hh--cchhhHHHHHhhhhhHH--HHHHHHHHHhhCc--
Q 000428 1371 -------HWKELTYLYIQYDEFDNAATT---IMNHSPE----AW--DHMQFKDVAVKVANVEL--YYKAVHFYLQEHP-- 1430 (1520)
Q Consensus 1371 -------lW~E~vfLy~~~~e~d~A~~~---mi~h~~~----a~--~h~~fk~ii~kvan~el--yYkai~FyL~~~P-- 1430 (1520)
-...+.-+-..-++|.+|+.+ +..||-+ -| ..-.|+.-+-++.++|. .-+|++=|.+.-|
T Consensus 149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 233444555566788888877 5555322 13 23347777777765554 3477788888888
Q ss_pred --chHHHHHHHHhhcCCHHHHHHHHH
Q 000428 1431 --DLINDLLNVLALRVDHTRVVDIMR 1454 (1520)
Q Consensus 1431 --~~l~dlL~~l~~rlD~~rvV~~~~ 1454 (1520)
+.-..+|+.|..-+|-..+-.+-.
T Consensus 229 ~dsREckflk~L~~aieE~d~e~fte 254 (288)
T KOG1586|consen 229 TDSRECKFLKDLLDAIEEQDIEKFTE 254 (288)
T ss_pred cccHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566777777766554444433
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=75.66 E-value=5.2 Score=49.87 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=48.5
Q ss_pred cCcchH-HHHHhhhhccccHHHHHHHHHhhc----C-------HHHHHHHHHHhcCHHHHHHHHHHhCC
Q 000428 1207 PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS----N-------WAKLAVTLVKLKQFQGAVDAARKANS 1263 (1520)
Q Consensus 1207 ~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~----N-------~~kLA~~lv~L~~y~~Ave~AkKa~~ 1263 (1520)
++.+.. .+.|..|+..|+|++|...|+..- | |..+|.||.++|++++|+++.++|-.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444 779999999999999999998643 3 89999999999999999999999754
No 248
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=75.29 E-value=59 Score=41.14 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=81.8
Q ss_pred cCcchH-HHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHh-----CChhhHHHHHH
Q 000428 1207 PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKA-----NSAKTWKEVCF 1272 (1520)
Q Consensus 1207 ~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa-----~~~k~wk~v~~ 1272 (1520)
|++.-+ +..||.+++.+.++.|.+-+.+.. -+..+|.+|.+.|++++|+..-+.. +++..|.-...
T Consensus 337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAq 416 (484)
T COG4783 337 PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQ 416 (484)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 555555 669999999999999999888765 2455699999999999999876543 47779988888
Q ss_pred HHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1273 ACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1273 acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
+|-+-|+..-| ...-.+.|-..|.+++++.++.++.
T Consensus 417 ay~~~g~~~~a-------------~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 417 AYAELGNRAEA-------------LLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHhCchHHH-------------HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88877765554 4466788899999999999999883
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.11 E-value=5.1 Score=33.73 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhc--CCcch
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRA--DDATQ 1150 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika--~d~s~ 1150 (1520)
|++|+.+|.+|...|+.++|++.|-++ .+|++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999886 44444
No 250
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=74.35 E-value=37 Score=35.38 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhcCC--------cchHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRADD--------ATQFLDVIRAAEDADVYHDLVRYLLMVRQK 1177 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika~d--------~s~~~evi~~a~~a~~~e~Li~yL~m~r~~ 1177 (1520)
|+++|.+|.++-..|+-++||..|-++-. ...+..+-.+.-..|++++-+..|+.+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999998821 112334556667788888888888866553
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.01 E-value=65 Score=37.85 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=44.8
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchH--------HHHHHHHHhcCChhHHHHHHHH
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRADDATQF--------LDVIRAAEDADVYHDLVRYLLM 1173 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~--------~evi~~a~~a~~~e~Li~yL~m 1173 (1520)
.-++.||.=|..-|+.|+.++|++.|-+...--.| ...+++.++.+++++-+.++.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr 96 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDR 96 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 46788999999999999999999999776321111 1677888888888888888884
No 252
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.89 E-value=1.3e+02 Score=35.11 Aligned_cols=176 Identities=14% Similarity=0.263 Sum_probs=102.0
Q ss_pred CCcEEEEehhhhccccccccCC-ceeEEEeccCCeEEEEe---cCcEEEEeccCC-CCccchhhcccC------CCCCeE
Q 000428 91 QDHLQIFNIELKAKIKSHQMSE-QVVFWKWISPKMLGVVT---QTSVYHWSIEGD-SEPVKMFDRTAN------LTNNQI 159 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e-~vvfWkWis~~~l~lVT---~~aVyHW~i~~~-~~P~k~f~R~~~------L~~~qI 159 (1520)
-+.+|+||++|-+-+..+.=.. .|.=-++=.+.. .+++ +.+|=-|+.-.. ..|+++|+-.-. ++++.|
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heI 158 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEI 158 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEE
Confidence 4889999999987555443211 222222222222 2232 467888988654 489999975421 134555
Q ss_pred EEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEec------C
Q 000428 160 INYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKS------F 233 (1520)
Q Consensus 160 i~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~------~ 233 (1520)
+. |.+.|..--|++..+. +..+--.+|-|-.+|..-. .
T Consensus 159 va-----------------------GS~DGtvRtydiR~G~-------------l~sDy~g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 159 VA-----------------------GSVDGTVRTYDIRKGT-------------LSSDYFGHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred Ee-----------------------eccCCcEEEEEeecce-------------eehhhcCCcceeEEecCCCCEEEEee
Confidence 54 4688999999988774 3333334444444443221 1
Q ss_pred CCCcccceEEEEecCCCCCCCCc-ccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccC
Q 000428 234 NAGQVTSKLHVIELGAQPGKPSF-TKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRIS 312 (1520)
Q Consensus 234 ~~~~~~~kL~i~Ei~~~~~~~~f-~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs 312 (1520)
-+ +.||+++=.+..=-..| ..|+. .|-+---+++.--.++=-+.-|++|+||+..++.+-.-+.-
T Consensus 203 l~----stlrLlDk~tGklL~sYkGhkn~----------eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 203 LD----STLRLLDKETGKLLKSYKGHKNM----------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred cc----ceeeecccchhHHHHHhcccccc----------eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 22 56888765332100011 01111 22233344566667777889999999999999998887776
Q ss_pred CCceE
Q 000428 313 PDPIF 317 (1520)
Q Consensus 313 ~~~iF 317 (1520)
+-+|-
T Consensus 269 ~~v~v 273 (307)
T KOG0316|consen 269 STVIV 273 (307)
T ss_pred CceeE
Confidence 66643
No 253
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=73.79 E-value=59 Score=43.07 Aligned_cols=187 Identities=15% Similarity=0.030 Sum_probs=107.0
Q ss_pred ccccchhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHH
Q 000428 1032 FSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVE 1111 (1520)
Q Consensus 1032 fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e 1111 (1520)
|.+|++|.--+.++---..+++-.++++.-+|- ..++.+.-++|.+|.-+..+|+=.+.-. ++. -..
T Consensus 861 ~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~n~-~~Ev~~yi~~hdly~~~l~lyrYd~e~Q---k~~---------~ni 927 (1243)
T COG5290 861 RQDLEALRRKFSIDNYLSIYESALGHLNEDLNV-IREVMKYICRHDLYDFLLLLYRYDGELQ---KFK---------INI 927 (1243)
T ss_pred hhhhHHHHhHhchhhhHHHHHHHHHhhHhHHHH-HHHHHHHHHhccchHHHHHHHHhhhhhh---hhh---------HHH
Confidence 334444443333332222445555565555432 3456665568999999999998644322 111 122
Q ss_pred HHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHH
Q 000428 1112 FAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAY 1191 (1520)
Q Consensus 1112 ~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~y 1191 (1520)
||....+.--+---++||.-.|++.||+..|-.| ++|.+....+++ + +..++ ...
T Consensus 928 fa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA----------------~mwrec~si~~q--~--~~~e~-----~~~ 982 (1243)
T COG5290 928 FAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSA----------------LMWRECGSISTQ--E--KGYEF-----NLC 982 (1243)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhHHhh--h--cchHH-----HHH
Confidence 5554444444555677888888899999988763 444444433331 0 00000 000
Q ss_pred HhhCChhhHHHHhcCcCcchHHHHHhhhhccc-cHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHH
Q 000428 1192 AKIDRLGDIEEFILMPNVANLQNVGDRLYDDT-LYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEV 1270 (1520)
Q Consensus 1192 Ak~~~l~ele~fl~~~N~a~v~~vgd~~~eeg-~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v 1270 (1520)
| | .-..+.|++.. .-+|+++.-.-.+|-......+||-.+|.+|.-.|+++......|++
T Consensus 983 A--------E-----------~L~S~l~ve~R~~~da~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~ 1043 (1243)
T COG5290 983 A--------E-----------LLPSDLLVEFRKAGDAEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHY 1043 (1243)
T ss_pred H--------H-----------hhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHh
Confidence 0 0 00112333332 23455666666777777788899999999999999999999999986
Q ss_pred HHHHh
Q 000428 1271 CFACV 1275 (1520)
Q Consensus 1271 ~~acv 1275 (1520)
-..-+
T Consensus 1044 ~~~~L 1048 (1243)
T COG5290 1044 EAGQL 1048 (1243)
T ss_pred hhhhh
Confidence 54443
No 254
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=73.74 E-value=25 Score=40.71 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1122 WSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1122 w~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
.+.+|.++...++.++|+.+|-+.
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 567888888888999999887554
No 255
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=73.47 E-value=1.9e+02 Score=37.87 Aligned_cols=269 Identities=15% Similarity=0.195 Sum_probs=155.5
Q ss_pred eEEEEEcCCCCCccccccCcccccc----cCCcceeeeeccCCCCCCCcEEEEehhhhcc-------ccccccCCceeEE
Q 000428 49 SVVIIDMNQPMQPLRRPITADSALM----NPNSRILALKAQLPGTTQDHLQIFNIELKAK-------IKSHQMSEQVVFW 117 (1520)
Q Consensus 49 ~v~Ivdl~~~~~~~r~pi~AdsAim----nP~~~iiAlra~~~~~~g~~lQiFnle~k~k-------lks~~~~e~vvfW 117 (1520)
.+.|-|+.||+.|.+- -.+.|.+| +|..+-+-+=| +-.+++=+||+..-+. ..++.-+++|+=-
T Consensus 223 ~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG----~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGG----CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred eEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEee----ccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 4788899988665332 44555444 66655444433 2257789999987766 4677889999988
Q ss_pred Eecc----CCeEEEEecCcEEEEeccCCCCccchhhcccCC------CC-CeEEEeeeCCCCCeEEEEeccCCCCCCCcc
Q 000428 118 KWIS----PKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANL------TN-NQIINYKCDPTEKWLVLIGIAPGSAERPQL 186 (1520)
Q Consensus 118 kWis----~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L------~~-~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~ 186 (1520)
.|+. .+.+.+-++..|--|+++.-+.|++.-...+.. .. +|+.+-..-+...=..++|- ..|.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT------e~G~ 371 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT------EEGK 371 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc------CCcE
Confidence 8983 347889999999999998888888877666655 32 68888888888888888883 3442
Q ss_pred -ccceEEEeeccc----ccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccc
Q 000428 187 -VKGNMQLFSVDQ----QRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQA 261 (1520)
Q Consensus 187 -i~G~mQLyS~er----~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~ 261 (1520)
..|.=|=|+..- +..+..-.|.++=..+. -+|--..+|..+- .-+ .+|--.+. ...|-|.-
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g--DW~----vriWs~~~---~~~Pl~~~--- 437 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG--DWT----VRIWSEDV---IASPLLSL--- 437 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec--cce----eEeccccC---CCCcchhh---
Confidence 122222222222 11222222333322221 1122222222221 111 22222221 12232211
Q ss_pred cccCCCCCCCCcceeEEeccccceEEEEec-cceEEEEeccc--hhhhhhcccCCCceEEeec-cCCCCcEEEEc-CCCc
Q 000428 262 DLFFPPDFADDFPVAMQISHKYGLIYVITK-LGLLFVYDLET--AAAVYRNRISPDPIFLTSE-ASSLGGFYAIN-RRGQ 336 (1520)
Q Consensus 262 d~~fpp~~~~DFPv~mqvs~k~g~iyviTK-~G~l~lyDl~t--g~~i~~~rIs~~~iF~~~~-~~~~~Gi~~Vn-~~Gq 336 (1520)
+-..|.=-++++|+-+--+|.++. .|.|++||+-- -.++-+.++. .-+.+.. -+..|-+++|. ..|.
T Consensus 438 ------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 438 ------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGT 509 (555)
T ss_pred ------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCc
Confidence 112344456899998876666666 99999999964 4556666666 2222222 22323355554 7888
Q ss_pred EEEEEeecCccccc
Q 000428 337 VLLATVNEATIVPF 350 (1520)
Q Consensus 337 Vl~v~i~~~~ivpy 350 (1520)
++-..+.+.--+|-
T Consensus 510 ~~~~~l~~~l~~~~ 523 (555)
T KOG1587|consen 510 THILKLSESLAVPS 523 (555)
T ss_pred EEEEEcCchhhccC
Confidence 88888776655554
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=73.43 E-value=11 Score=41.51 Aligned_cols=83 Identities=19% Similarity=0.094 Sum_probs=65.1
Q ss_pred hHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHh-----CChhhHHHHHHHHhcc
Q 000428 1211 NLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKA-----NSAKTWKEVCFACVDA 1277 (1520)
Q Consensus 1211 ~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa-----~~~k~wk~v~~acv~~ 1277 (1520)
++...|-..+..|+|+.|..+|.-.- -|--||.|+..+|+|++|+++.--| ++|.+.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~---------- 108 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV---------- 108 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc----------
Confidence 45678888999999999999998544 3567899999999999999987663 233332
Q ss_pred hhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCc
Q 000428 1278 EEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGL 1323 (1520)
Q Consensus 1278 ~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~l 1323 (1520)
|+. ..+|-..|+.++|...|+.+...
T Consensus 109 --f~a------------------gqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 --FFT------------------GQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --chH------------------HHHHHHhCCHHHHHHHHHHHHhC
Confidence 333 37889999999999999888653
No 257
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.09 E-value=80 Score=39.81 Aligned_cols=163 Identities=16% Similarity=0.207 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCCCccccccCccc-----ccccCCcceeeeeccCCCCCCCcEEEEehhhhccc-----cccccCCceeE
Q 000428 47 QNSVVIIDMNQPMQPLRRPITADS-----ALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKI-----KSHQMSEQVVF 116 (1520)
Q Consensus 47 ~~~v~Ivdl~~~~~~~r~pi~Ads-----AimnP~~~iiAlra~~~~~~g~~lQiFnle~k~kl-----ks~~~~e~vvf 116 (1520)
|+.|.|=|+.+ ..+.|. .++.+ .-++|..+.|+.=.. -..+-|||+++.+++ ..+.-+.+|.+
T Consensus 267 D~tvriWd~~~-~~~~~~-l~~hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T KOG0266|consen 267 DGTVRIWDVRT-GECVRK-LKGHSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLETGSKLCLKLLSGAENSAPVTS 339 (456)
T ss_pred CCcEEEEeccC-CeEEEe-eeccCCceEEEEECCCCCEEEEcCC-----CccEEEEECCCCceeeeecccCCCCCCceeE
Confidence 34888888876 334443 44333 225566677766432 578999999999954 33333223455
Q ss_pred EEe-ccCCeEEEEecC-cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEe
Q 000428 117 WKW-ISPKMLGVVTQT-SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLF 194 (1520)
Q Consensus 117 WkW-is~~~l~lVT~~-aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLy 194 (1520)
=+| =+..-|..++++ .|=-|++.+...|......+ +. .+-|...-.....+|.+..+ ..|.|.+|
T Consensus 340 ~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~sg~-----------~d~~v~~~ 406 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS-NL-VRCIFSPTLSTGGKLIYSGS-----------EDGSVYVW 406 (456)
T ss_pred EEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC-Cc-ceeEecccccCCCCeEEEEe-----------CCceEEEE
Confidence 555 355566666777 88899997544444433333 22 24565666677888876544 58999999
Q ss_pred ecc-cccccccchhhccceeeecCCCCCCceEEEEEEe
Q 000428 195 SVD-QQRSQALEAHAASFAQFKVPGNENPSVLISFATK 231 (1520)
Q Consensus 195 S~e-r~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r 231 (1520)
... ....|.++||. .+......-....++++++.-
T Consensus 407 ~~~s~~~~~~l~~h~--~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 407 DSSSGGILQRLEGHS--KAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred eCCccchhhhhcCCC--CCceeccccCCCcCeeeecCc
Confidence 999 77999999996 333333344455666666643
No 258
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.82 E-value=2.7 Score=33.88 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHH
Q 000428 1107 ERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIE 1140 (1520)
Q Consensus 1107 ~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~ 1140 (1520)
++|++.--. +++.|+.||..+...|+.++|++
T Consensus 3 ~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPN--NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhcC
Confidence 345555544 99999999999999999999973
No 259
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=72.73 E-value=96 Score=39.39 Aligned_cols=111 Identities=20% Similarity=0.393 Sum_probs=73.4
Q ss_pred CCcEEEEehhhhccccccccCCceeE-EEec--cCCeEEEEecCcEEEEeccCCC--CccchhhcccCCCCCeEEEeeeC
Q 000428 91 QDHLQIFNIELKAKIKSHQMSEQVVF-WKWI--SPKMLGVVTQTSVYHWSIEGDS--EPVKMFDRTANLTNNQIINYKCD 165 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e~vvf-WkWi--s~~~l~lVT~~aVyHW~i~~~~--~P~k~f~R~~~L~~~qIi~Y~~~ 165 (1520)
...|-|||-..|.|+....-..++|| =+|- +++.|-.-.....|.|+.+|++ .-+-+|+.+.+ .-.+-+.+.-+
T Consensus 179 ~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~en 257 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLEN 257 (626)
T ss_pred ccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCC
Confidence 57799999999999988775555444 4554 7888888888999999998776 44557877765 22222222222
Q ss_pred CCCCeEEEEeccCCCCCCCccccceEEEeecccc-cccccchhhccceeeec
Q 000428 166 PTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ-RSQALEAHAASFAQFKV 216 (1520)
Q Consensus 166 ~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~-~sQ~ieghaa~F~~~~~ 216 (1520)
.| +++|=| .|.|-.||+.-. +++..-.|-+.-..+-+
T Consensus 258 gd----viTgDS----------~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~ 295 (626)
T KOG2106|consen 258 GD----VITGDS----------GGNILIWSKGTNRISKQVHAHDGGVFSLCM 295 (626)
T ss_pred CC----EEeecC----------CceEEEEeCCCceEEeEeeecCCceEEEEE
Confidence 22 444433 799999999644 44444477665544443
No 260
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=72.56 E-value=32 Score=38.68 Aligned_cols=141 Identities=21% Similarity=0.189 Sum_probs=86.7
Q ss_pred hhHHHHHhhhcccCCCChhHHHHHHHHHHhCChhHHHHHhhc--CCCCChHhHHHHHhhcCCCCCCCcceeccc--cCCh
Q 000428 723 EGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRE--SNFYDPEKTKNFLMEAKLPDARPLINVCDR--FGFV 798 (1520)
Q Consensus 723 e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q~~EvEr~~re--sn~yd~e~vk~~lk~~~l~d~~pli~vcdr--~~~v 798 (1520)
|.|-.|+.+=.=.+=-|+|--.+++=+.+.|+...+|+++-- ..+.|+..|-..|++.+|+| .+||||.+ .+|+
T Consensus 6 e~Lep~Il~~~i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~Lyd--alIYv~n~~l~DYv 83 (196)
T PF12816_consen 6 ECLEPFILSGKIKSLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGLYD--ALIYVWNRALNDYV 83 (196)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCC--eeeeeeeccccCCc
Confidence 444455433333334588999999999999999999998854 88999999999999999999 46888866 4777
Q ss_pred hhhhHHhhcchhHHHHHHHhhhcCCC---ChhHHHHHHhhCCCChhHHHHHHHHh-ccCCCchhHHHHHHHhhh-HHHHH
Q 000428 799 PDLTHYLYTNNMLRYIEGYVQKVNPG---NAPLVVGQLLDDECPEDFIKGLILSV-RSLLPVEPLVEECEKRNR-LRLLT 873 (1520)
Q Consensus 799 ~~L~~yLy~~~~~~~Ie~Yv~~vnpa---~~~~Vv~~lld~~~~E~~i~~LL~~v-~~~~~~~eLv~~~E~R~r-l~~L~ 873 (1520)
-=|+.. ++...+..+-. ....+... ......+.+|-... +.+.|.++.+ ..++..+ -+.+.
T Consensus 84 TPL~~l---------l~~i~~~~~~~~~~~~~~~~~~----~~~~kil~Yls~~L~Gr~yP~g~~i-~~~~~~~ak~~i~ 149 (196)
T PF12816_consen 84 TPLEEL---------LELIRSALNKCQIFDSSSEEDS----ELGYKILVYLSYCLTGRQYPSGEII-PEEKAPSAKREIY 149 (196)
T ss_pred HHHHHH---------HHHHHHhhhcccccCcchhhhh----hhHHHHHHHHHHHHcCCCCCCCCCC-ChhHHHHHHHHHH
Confidence 544444 44444433321 11111000 11233344443333 3456888887 3344444 34556
Q ss_pred HHHHHH
Q 000428 874 QFLEHL 879 (1520)
Q Consensus 874 ~~LE~~ 879 (1520)
.||=++
T Consensus 150 ~~Lfs~ 155 (196)
T PF12816_consen 150 SFLFSG 155 (196)
T ss_pred HHHHcC
Confidence 666544
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=71.87 E-value=2.3e+02 Score=35.71 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=72.1
Q ss_pred ecCeeEEEEecCCCCeEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccC
Q 000428 34 ESDKYICVRETAPQNSVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMS 111 (1520)
Q Consensus 34 eSdk~icvre~~~~~~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~ 111 (1520)
.+.+.+.+....+..++.++|+..... .+..+-...+.-..|..+-||+-+. ..+...|.++|+++++ ++..+-.
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~--~~g~~~Iy~~dl~tg~-~~~lt~~ 304 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLS--KDGQPEIYVVDIATKA-LTRITRH 304 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEe--CCCCeEEEEEECCCCC-eEECccC
Confidence 444555555544333999999875432 1111212234567888887776422 1112457777887764 2222211
Q ss_pred C-ceeEEEecc-CCeEEEEecC----cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEec
Q 000428 112 E-QVVFWKWIS-PKMLGVVTQT----SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGI 176 (1520)
Q Consensus 112 e-~vvfWkWis-~~~l~lVT~~----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi 176 (1520)
. ....=.|-. .+.|++++.. .+|.|++++. .+.++.. .+....+-..++|++|++.++-
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~~~~Lt~-----~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-KVSRLTF-----EGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-CEEEEec-----CCCCCcCeeECCCCCEEEEEEe
Confidence 1 123335653 3467777653 5888888643 3444421 1112223467899999998774
No 262
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=71.71 E-value=1.6e+02 Score=35.71 Aligned_cols=212 Identities=15% Similarity=0.209 Sum_probs=117.2
Q ss_pred CcEEEEehhhhccccccccCC-ceeEEEe-ccCCeEEEEecCc--------EEEEeccCCCCccchhhcccCCCCCeEEE
Q 000428 92 DHLQIFNIELKAKIKSHQMSE-QVVFWKW-ISPKMLGVVTQTS--------VYHWSIEGDSEPVKMFDRTANLTNNQIIN 161 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~e-~vvfWkW-is~~~l~lVT~~a--------VyHW~i~~~~~P~k~f~R~~~L~~~qIi~ 161 (1520)
+...|||++-=.+-.+-++.+ .+-.-+- .--+.||||.+.. |..|+ +-...|+.=|++. ..|.+
T Consensus 26 ~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D~k~~~i~el~f~-----~~I~~ 99 (346)
T KOG2111|consen 26 TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-DLKERCIIELSFN-----SEIKA 99 (346)
T ss_pred CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-cccCcEEEEEEec-----cceee
Confidence 337777776532222222211 1111111 1357799997544 77775 2223444434333 44555
Q ss_pred eeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEec------CCC
Q 000428 162 YKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKS------FNA 235 (1520)
Q Consensus 162 Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~------~~~ 235 (1520)
-+.+.+.- ++ --++.|=+|+.-.+..|.- .++..+.|-.|.+.+... -.|
T Consensus 100 V~l~r~ri--Vv------------vl~~~I~VytF~~n~k~l~----------~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 100 VKLRRDRI--VV------------VLENKIYVYTFPDNPKLLH----------VIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred EEEcCCeE--EE------------EecCeEEEEEcCCChhhee----------eeecccCCCceEeecCCCCceEEEcCC
Confidence 55444421 10 1257888888886665542 223333344455544432 012
Q ss_pred CcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccc--eEEEEeccceEEEEeccchhhhhhccc--
Q 000428 236 GQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYG--LIYVITKLGLLFVYDLETAAAVYRNRI-- 311 (1520)
Q Consensus 236 ~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g--~iyviTK~G~l~lyDl~tg~~i~~~rI-- 311 (1520)
.+ .|.+.|+++.....+|++ ..| +-|=+++--.-.+.| +.--=||.-.|.+||-+||+.|+--|=
T Consensus 156 ~k-~GqvQi~dL~~~~~~~p~-------~I~---AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 156 FK-TGQVQIVDLASTKPNAPS-------IIN---AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred Cc-cceEEEEEhhhcCcCCce-------EEE---cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 11 367999999776444322 222 568888887778888 445568888999999999999987653
Q ss_pred CCCceEEeeccCCCCcEEEEcCCCcEEEEEeec
Q 000428 312 SPDPIFLTSEASSLGGFYAINRRGQVLLATVNE 344 (1520)
Q Consensus 312 s~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~ 344 (1520)
-...|+.-+-+++..=+.+-..||-|.=.++-+
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 334566555544444333344777666655544
No 263
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=71.65 E-value=4.1e+02 Score=36.90 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=36.7
Q ss_pred cccCChhh------HHHHhhc----CChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhh
Q 000428 657 THAIEPQS------LVEFFGT----LSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQL 707 (1520)
Q Consensus 657 ~~~~~~~~------l~~~~~~----l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~ 707 (1520)
+-++.|+. |++++.+ ++.++...|+......+..|+.+-.-.+|.+|-++-
T Consensus 63 AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q~~nk~~~lcKk~~d~~ 123 (1238)
T KOG1127|consen 63 AAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQSKNKGEALCKKFDDQY 123 (1238)
T ss_pred HHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhhhhhHHHHHHHHHhhHH
Confidence 44566666 3444544 677899999999998888888777777777766653
No 264
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.64 E-value=20 Score=42.00 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc-----------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS-----------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~-----------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
.-+|+.++..|+|+.|...|..+- =+.++|.+|..+|++++|++..++.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 557888888899998888887663 2456788999999999998888763
No 265
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=71.23 E-value=7.6 Score=35.28 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=37.0
Q ss_pred HhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1216 GDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1216 gd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
...++..++|+.|...++..- -|...|.+|.++|+|++|++...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 356778888888888887554 5666799999999999999988874
No 266
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=71.23 E-value=9 Score=34.79 Aligned_cols=53 Identities=28% Similarity=0.436 Sum_probs=38.7
Q ss_pred HHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1084 AIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1084 ~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
.+|-+.++|++|+.+ +++++..... ++..|+..|..+...|+..+|+..|-++
T Consensus 3 ~~~~~~~~~~~A~~~-------~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 3 QIYLQQEDYEEALEV-------LERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHhCCCHHHHHHH-------HHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 355556666666553 2334444333 9999999999999999999999998774
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=70.71 E-value=2.2e+02 Score=35.78 Aligned_cols=174 Identities=13% Similarity=0.184 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCccccccCcc-----cccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCC-ceeEEEecc-
Q 000428 49 SVVIIDMNQPMQPLRRPITAD-----SALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSE-QVVFWKWIS- 121 (1520)
Q Consensus 49 ~v~Ivdl~~~~~~~r~pi~Ad-----sAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e-~vvfWkWis- 121 (1520)
+|.++|+..+. ++++... +.-..|..+-||+-.. + .+...|-+.|++++. ++..+-.. ..+..+|-.
T Consensus 214 ~Iyv~dl~tg~---~~~lt~~~g~~~~~~~SPDG~~la~~~~-~-~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 214 TLYKYNLYTGK---KEKIASSQGMLVVSDVSKDGSKLLLTMA-P-KGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVED 287 (419)
T ss_pred EEEEEECCCCc---EEEEecCCCcEEeeEECCCCCEEEEEEc-c-CCCcEEEEEECCCCc-EEEcccCCCccCccEECCC
Confidence 99999996543 3333211 2346788766666432 1 113456677777764 33333222 245678874
Q ss_pred CCeEEEEecC----cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEe--e
Q 000428 122 PKMLGVVTQT----SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLF--S 195 (1520)
Q Consensus 122 ~~~l~lVT~~----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLy--S 195 (1520)
.+.|+++++. .+|..++++. .+.++..- +. .+...++|++|++.++-. ..+..-.|.-+|| .
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~g-~~~rlt~~-g~------~~~~~SPDG~~Ia~~~~~----~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNSG-SVEQVVFH-GK------NNSSVSTYKNYIVYSSRE----TNNEFGKNTFNLYLIS 355 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCCC-CeEeCccC-CC------cCceECCCCCEEEEEEcC----CCcccCCCCcEEEEEE
Confidence 4579999876 8999999653 33344321 11 134789999999998854 2221112334444 4
Q ss_pred cccc-cccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 196 VDQQ-RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 196 ~er~-~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
.+.+ ..++-++....+-.+ ++....+.|+... .| .+.|-++.++.
T Consensus 356 ~~~g~~~~LT~~~~~~~p~~-----SPDG~~I~f~~~~-~~---~~~L~~~~l~g 401 (419)
T PRK04043 356 TNSDYIRRLTANGVNQFPRF-----SSDGGSIMFIKYL-GN---QSALGIIRLNY 401 (419)
T ss_pred CCCCCeEECCCCCCcCCeEE-----CCCCCEEEEEEcc-CC---cEEEEEEecCC
Confidence 4344 333333322222223 2344567777664 33 26788888843
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.66 E-value=5.6 Score=30.96 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
++|+.+|..+...|+.++|+.+|.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68999999999999999999999885
No 269
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.28 E-value=1.2e+02 Score=36.05 Aligned_cols=177 Identities=19% Similarity=0.102 Sum_probs=105.3
Q ss_pred CChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCC
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDR 1196 (1520)
Q Consensus 1117 ~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~ 1196 (1520)
..++.-.-+.++|+..|+.-.-|..-.. +...-+.+|...+.-.++|...-+-
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~-------------------------- 91 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKE-GKATPLQAVRLLAEYLELESNKKSI-------------------------- 91 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccc-ccCChHHHHHHHHHHhhCcchhHHH--------------------------
Confidence 5678888899999998887777666444 4466666666666644444322222
Q ss_pred hhhHHH-HhcC---cCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHH---HHHHHHhcCHHHHHHHHHHhCC---hhh
Q 000428 1197 LGDIEE-FILM---PNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKL---AVTLVKLKQFQGAVDAARKANS---AKT 1266 (1520)
Q Consensus 1197 l~ele~-fl~~---~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kL---A~~lv~L~~y~~Ave~AkKa~~---~k~ 1266 (1520)
+.++.+ ++.. +|....-.-|..|++.|+|++|...-....|-.-. +.++.++.+++.|...-|+.+. +.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t 171 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT 171 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 233322 2222 23233355678899999999999998886665444 6788889999999999888653 224
Q ss_pred HHHHHHHHh----cchhhhHHHh-----hccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1267 WKEVCFACV----DAEEFRLAQI-----CGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1267 wk~v~~acv----~~~e~rLA~~-----~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
.-+...|-+ -++....|-- |+ .--..|..+.+...+--..|+|+||-++++-++
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 433333222 1111111110 00 000112334455555566788888888888775
No 270
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=69.43 E-value=3.7e+02 Score=35.55 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHhhhcCCcc-hhHH--HHHHHHhhCChhhHHHHhc----CcCcch--HHHHHhhhhccccHHHHHHHH
Q 000428 1162 DVYHDLVRYLLMVRQKVKEPK-VDSE--LIYAYAKIDRLGDIEEFIL----MPNVAN--LQNVGDRLYDDTLYEAAKIIY 1232 (1520)
Q Consensus 1162 ~~~e~Li~yL~m~r~~~~ep~-id~~--lv~~yAk~~~l~ele~fl~----~~N~a~--v~~vgd~~~eeg~YeaAk~~y 1232 (1520)
++|.--.++.+..= .+.|. -|+- .+..+...|+..+.-+++. +.--+. +...|=..-++.+|+.|..+|
T Consensus 21 kQYkkgLK~~~~iL--~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQIL--KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHH--HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 66666666666322 23332 1221 4455666777777766633 111222 367788888999999999999
Q ss_pred HhhcCH----HH----HHHHHHHhcCHHHHHHHHHH
Q 000428 1233 AFISNW----AK----LAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1233 ~~~~N~----~k----LA~~lv~L~~y~~Ave~AkK 1260 (1520)
.++-++ .+ ||.+-.++++|+...+.-.+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 987643 23 47777789999988775443
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=69.31 E-value=3.7 Score=33.21 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1297 LEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1297 l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
+..|...|.+.|+|++|+.+|++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999976443
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=69.17 E-value=2.6e+02 Score=33.75 Aligned_cols=193 Identities=16% Similarity=0.273 Sum_probs=100.9
Q ss_pred CCcEEEEehh-hhccccccc---cCCceeEEEeccCCeEEEEe-cC-----cEEEEeccCCCCccchhhcccCCCCCeEE
Q 000428 91 QDHLQIFNIE-LKAKIKSHQ---MSEQVVFWKWISPKMLGVVT-QT-----SVYHWSIEGDSEPVKMFDRTANLTNNQII 160 (1520)
Q Consensus 91 g~~lQiFnle-~k~klks~~---~~e~vvfWkWis~~~l~lVT-~~-----aVyHW~i~~~~~P~k~f~R~~~L~~~qIi 160 (1520)
+..|.+|.++ ...+|.... -.+.-.|-.|=.+.....|+ +. .|.-|+++.++.--+...+.+. .+..-.
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~ 90 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPC 90 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEE
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcE
Confidence 6778999883 333343222 22333444443444444444 32 6777777654222222333332 344445
Q ss_pred EeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccc--cccc------------------cchhhccceeeecCCCC
Q 000428 161 NYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ--RSQA------------------LEAHAASFAQFKVPGNE 220 (1520)
Q Consensus 161 ~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~--~sQ~------------------ieghaa~F~~~~~~g~~ 220 (1520)
.-..|++++|++..--. .|.+-.|.++.. +... -..|++.| ..+|
T Consensus 91 ~i~~~~~g~~l~vany~----------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~---~pdg-- 155 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYG----------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF---SPDG-- 155 (345)
T ss_dssp EEEECTTSSEEEEEETT----------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE----TTS--
T ss_pred EEEEecCCCEEEEEEcc----------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE---CCCC--
Confidence 56678888888876543 555566655541 1111 11122222 1111
Q ss_pred CCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEecc-ceEEEEe
Q 000428 221 NPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKL-GLLFVYD 299 (1520)
Q Consensus 221 ~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~-G~l~lyD 299 (1520)
+.+..+-. | .-++++..++...+. + .+...+.+|+ +.=|--|-+++.-..+||+.-. +-|.+|+
T Consensus 156 ---~~v~v~dl---G---~D~v~~~~~~~~~~~--l-~~~~~~~~~~---G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 156 ---RFVYVPDL---G---ADRVYVYDIDDDTGK--L-TPVDSIKVPP---GSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp ---SEEEEEET---T---TTEEEEEEE-TTS-T--E-EEEEEEECST---TSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ---CEEEEEec---C---CCEEEEEEEeCCCce--E-EEeecccccc---CCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 11111111 2 146777777554322 3 2244555664 5779999999998999999765 5599999
Q ss_pred cc--chhhhhhcccCCC
Q 000428 300 LE--TAAAVYRNRISPD 314 (1520)
Q Consensus 300 l~--tg~~i~~~rIs~~ 314 (1520)
+. +|+.--..+++.-
T Consensus 221 ~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EETTTTEEEEEEEEESC
T ss_pred ecccCCceeEEEEeeec
Confidence 98 6755555555543
No 273
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.12 E-value=1.2e+02 Score=38.08 Aligned_cols=196 Identities=17% Similarity=0.251 Sum_probs=106.3
Q ss_pred cCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeE---EEeccCCeEEEEecCcEEEEeccCCCCccchhhc
Q 000428 74 NPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVF---WKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDR 150 (1520)
Q Consensus 74 nP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvf---WkWis~~~l~lVT~~aVyHW~i~~~~~P~k~f~R 150 (1520)
.|..+.+|.=+. ++.+|||+.+|.+-++.+.-.-+-|+ .+==+.+....-++.+|=.|+++.-+--.-+|..
T Consensus 211 S~Dgkylatgg~-----d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 211 SSDGKYLATGGR-----DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred cCCCcEEEecCC-----CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 344455555443 78899999999999888544333222 2223456667778899999999754433334443
Q ss_pred ccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEE
Q 000428 151 TANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFAT 230 (1520)
Q Consensus 151 ~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~ 230 (1520)
+. -|++--+-.-++ |+-+| ...+.|+||.+..-.+-+.-||.+++--..+=+..| |+.
T Consensus 286 qd-----~v~~IdaL~reR-~vtVG----------grDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H------fvs 343 (479)
T KOG0299|consen 286 QD-----GVLGIDALSRER-CVTVG----------GRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH------FVS 343 (479)
T ss_pred cc-----ceeeechhcccc-eEEec----------cccceeEEEeccccceeeeeCCCCCeeeEEEecccc------eee
Confidence 32 233322222222 22222 357899999998777777788864442221111111 111
Q ss_pred ecCCCCcccceEEEEecCCCCCCCCcccccccccCC---CCCCCCcceeEEeccccceEEEEeccceEEEEeccch
Q 000428 231 KSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFP---PDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETA 303 (1520)
Q Consensus 231 r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fp---p~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg 303 (1520)
-+.+ |.+-+--+- ...|-|..+...--.| |-..+-.=.++-+..--+++-.-+-.|.|.||=+++|
T Consensus 344 GSdn-----G~IaLWs~~--KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 344 GSDN-----GSIALWSLL--KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCC-----ceEEEeeec--ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 1111 222222221 1122332222211111 1111124456677777778888888999999999999
No 274
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.72 E-value=19 Score=42.81 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=59.3
Q ss_pred HHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc-----CCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHH
Q 000428 1112 FAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSE 1186 (1520)
Q Consensus 1112 ~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~ 1186 (1520)
.+..-++.+=|..||.+|...|+..+|...|=+| +||+-....-++.+... ++.....
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-----------------~~~~ta~ 211 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-----------------GQQMTAK 211 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----------------CCcccHH
Confidence 3445788999999999999999999999999887 44444443333333221 1111111
Q ss_pred HHHHHHhhCChhhHHHHh--cCcCcchHHHHHhhhhccccHHHHHHHHHh
Q 000428 1187 LIYAYAKIDRLGDIEEFI--LMPNVANLQNVGDRLYDDTLYEAAKIIYAF 1234 (1520)
Q Consensus 1187 lv~~yAk~~~l~ele~fl--~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~ 1234 (1520)
.-.. +.+=+ +..|.....-+|-.+|++|+|..|...++.
T Consensus 212 a~~l---------l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 212 ARAL---------LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHH---------HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000 11111 124444445588889999999988865543
No 275
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.59 E-value=1.3e+02 Score=39.63 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=95.0
Q ss_pred cCHHHHHHHHHH---hcCHHHHHHHHHHhCChh-------hHHHHHHHHhcchhhhHHH---------hhccc-----c-
Q 000428 1236 SNWAKLAVTLVK---LKQFQGAVDAARKANSAK-------TWKEVCFACVDAEEFRLAQ---------ICGLN-----I- 1290 (1520)
Q Consensus 1236 ~N~~kLA~~lv~---L~~y~~Ave~AkKa~~~k-------~wk~v~~acv~~~e~rLA~---------~~gl~-----l- 1290 (1520)
-||++|-.-|++ ..+-+.|+++.=-....+ -+..+++-++++++|.+-- ..|+- |
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li 404 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI 404 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc
Confidence 588888888887 557788888765544332 2334566677777665521 11111 1
Q ss_pred --cccccc----HHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccCh--------hhhHHHHHHHHHh
Q 000428 1291 --IVQVDD----LEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRY--------EKLMEHIKLFSTR 1356 (1520)
Q Consensus 1291 --i~~~d~----l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~p--------ekLmehlk~y~~~ 1356 (1520)
....+. ++.+....+++|.+++||.||.-+...+++=.-+=..|+-+.+.... +++....+.+.++
T Consensus 405 ~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~ 484 (613)
T PF04097_consen 405 KFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER 484 (613)
T ss_dssp T-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH
Confidence 112223 46777889999999999999999987777633334566777777666 7788777776666
Q ss_pred hch---------HHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1357 LNI---------PKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNH 1395 (1520)
Q Consensus 1357 iNi---------~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h 1395 (1520)
+.- ++....|...-.-. -+|-+.+.|+|+.|+.++-+-
T Consensus 485 y~~~~~~~~~~~~~~~~t~~~Ll~L~-~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 485 YKSNPHISSKVSRKNRETFQLLLDLA-EFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HTTSHHHHTTS-HHHHHHHHHHHHHH-HHHHHHHTT-HHHHHHHHHHT
T ss_pred HHhCcchHhhccHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHhC
Confidence 633 33344444333222 245566678999998877666
No 276
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=68.55 E-value=19 Score=43.65 Aligned_cols=217 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred cceeee-cCeeEEEEecCCCCeEEEEEcCCCCCccccccC-cccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccc
Q 000428 29 TNVTME-SDKYICVRETAPQNSVVIIDMNQPMQPLRRPIT-ADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIK 106 (1520)
Q Consensus 29 ~~~t~e-Sdk~icvre~~~~~~v~Ivdl~~~~~~~r~pi~-AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klk 106 (1520)
+...+. .+||+-|-.-+|.++|.+||+....-+.--|+. +=.+..-+....-+|=+ -..++-+.|+..-|.+
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~------DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG------DGSLLTVTLDADGKEA 171 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET------TSCEEEEEETSTSSEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec------CCceEEEEECCCCCEe
Q ss_pred ccccCCceeEEEeccC------CeEEEEecCcEEEE-eccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCC
Q 000428 107 SHQMSEQVVFWKWISP------KMLGVVTQTSVYHW-SIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPG 179 (1520)
Q Consensus 107 s~~~~e~vvfWkWis~------~~l~lVT~~aVyHW-~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~ 179 (1520)
....+ +| .+ ..=+.+..+.-|.| +-+|.--+.++=.-.+.. ..+|-++....
T Consensus 172 -~~~t~--~F----~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~------------~~~~~~~t~~e-- 230 (342)
T PF06433_consen 172 -QKSTK--VF----DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF------------GKPWSLLTDAE-- 230 (342)
T ss_dssp -EEEEE--ES----STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE------------EEEEESS-HHH--
T ss_pred -Eeecc--cc----CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc------------cCcccccCccc--
Q ss_pred CCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccc
Q 000428 180 SAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKK 259 (1520)
Q Consensus 180 ~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk 259 (1520)
..++=--|=.|++...+.. ..|+++..+...|.|-.+-=-|-+++...+ |+
T Consensus 231 --~~~~WrPGG~Q~~A~~~~~----------------------~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-----kr 281 (342)
T PF06433_consen 231 --KADGWRPGGWQLIAYHAAS----------------------GRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-----KR 281 (342)
T ss_dssp --HHTTEEE-SSS-EEEETTT----------------------TEEEEEEEE--TT-TTS-EEEEEEEETTTT-----EE
T ss_pred --cccCcCCcceeeeeecccc----------------------CeEEEEecCCCCCCccCCceEEEEEECCCC-----eE
Q ss_pred cccccCCCCCCCCcceeEEeccccc-eEEEEecc-ceEEEEeccchhhh
Q 000428 260 QADLFFPPDFADDFPVAMQISHKYG-LIYVITKL-GLLFVYDLETAAAV 306 (1520)
Q Consensus 260 ~~d~~fpp~~~~DFPv~mqvs~k~g-~iyviTK~-G~l~lyDl~tg~~i 306 (1520)
...++.+.... ||+||+.-. .+|.++.. |.|++||..||+.+
T Consensus 282 v~Ri~l~~~~~-----Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 282 VARIPLEHPID-----SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEEEEEES-----EEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEeCCCccc-----eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
No 277
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=68.04 E-value=22 Score=36.96 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=56.6
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc-----------CHHHHHHHHHHhcCHHHHHHHHHHhCCh---hhHHHHHHHHhcch
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS-----------NWAKLAVTLVKLKQFQGAVDAARKANSA---KTWKEVCFACVDAE 1278 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~-----------N~~kLA~~lv~L~~y~~Ave~AkKa~~~---k~wk~v~~acv~~~ 1278 (1520)
.+.|..+-..|+.+.|..+|.+.. -+..+|++|..+|++++|+..-+++-.. +.|..
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--------- 75 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--------- 75 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH---------
Confidence 455666667788888888887554 4556899999999999999999885422 22311
Q ss_pred hhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1279 EFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1279 e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
..+. -+.-.....|+.+|+++.+-..+
T Consensus 76 ~l~~----------------f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 76 ALRV----------------FLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHH----------------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111 11234467899999988886553
No 278
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=66.82 E-value=1.8e+02 Score=34.59 Aligned_cols=187 Identities=17% Similarity=0.226 Sum_probs=103.0
Q ss_pred cEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEE
Q 000428 93 HLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLV 172 (1520)
Q Consensus 93 ~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~ 172 (1520)
.|+++|-.+.+-+.+|.|++. .. .+++-.|.+.+++. ..+.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~----------E~----~~s~~~~~l~~~~~-----------------------~~~~~i 45 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN----------EH----VTSLCSVKLKGDST-----------------------GKKEYI 45 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT----------EE----EEEEEEEEETTS--------------------------SSEEE
T ss_pred EEEEEeCCCCeEEEEEECCCC----------ce----EEEEEEEEEcCccc-----------------------cccCEE
Confidence 477788777777777777543 11 12444566644332 457888
Q ss_pred EEeccCCCCCCCcccc-ceEEEeecccc----------cccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccce
Q 000428 173 LIGIAPGSAERPQLVK-GNMQLFSVDQQ----------RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSK 241 (1520)
Q Consensus 173 l~Gi~~~~~~~~~~i~-G~mQLyS~er~----------~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~k 241 (1520)
++|.+ -+..++..-. |.+.+|.+.+. .+..++|-.-|...+ + ..|++-. | .+
T Consensus 46 vVGT~-~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~---~----~~lv~~~-----g----~~ 108 (321)
T PF03178_consen 46 VVGTA-FNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF---N----GRLVVAV-----G----NK 108 (321)
T ss_dssp EEEEE-E--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE---T----TEEEEEE-----T----TE
T ss_pred EEEec-ccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh---C----CEEEEee-----c----CE
Confidence 88887 1111122233 99999999884 223344444444444 1 1222222 4 68
Q ss_pred EEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEE--eccchhhhhhcccCCCceEEe
Q 000428 242 LHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVY--DLETAAAVYRNRISPDPIFLT 319 (1520)
Q Consensus 242 L~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~ly--Dl~tg~~i~~~rIs~~~iF~~ 319 (1520)
|++.+++... .+.++ ....-| =+.++|.+. -+.|++-+-+.-++++ |.+..+..--.| +..+..++
T Consensus 109 l~v~~l~~~~---~l~~~-~~~~~~-----~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~ 176 (321)
T PF03178_consen 109 LYVYDLDNSK---TLLKK-AFYDSP-----FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVT 176 (321)
T ss_dssp EEEEEEETTS---SEEEE-EEE-BS-----SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEE
T ss_pred EEEEEccCcc---cchhh-heecce-----EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEE
Confidence 9999997753 23222 112111 155555544 5588888888777776 654443443333 22355544
Q ss_pred ec--cCCCCcEEEEcCCCcEEEEEeecC
Q 000428 320 SE--ASSLGGFYAINRRGQVLLATVNEA 345 (1520)
Q Consensus 320 ~~--~~~~~Gi~~Vn~~GqVl~v~i~~~ 345 (1520)
+- -.+...+++.++.|.|.-...+++
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 43 212248999999999999999853
No 279
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=66.63 E-value=10 Score=47.35 Aligned_cols=67 Identities=22% Similarity=0.183 Sum_probs=51.0
Q ss_pred hhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChh---HHHH
Q 000428 1048 KADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDA---VWSQ 1124 (1520)
Q Consensus 1048 k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~e---Vw~~ 1124 (1520)
.+||.....+++. |..+.+.|.|+||...|++ |++.... .++ .||.
T Consensus 69 ~~dP~~a~a~~NL---------G~AL~~lGryeEAIa~f~r--------------------ALeL~Pd--~aeA~~A~yN 117 (453)
T PLN03098 69 EADVKTAEDAVNL---------GLSLFSKGRVKDALAQFET--------------------ALELNPN--PDEAQAAYYN 117 (453)
T ss_pred cCCCCCHHHHHHH---------HHHHHHcCCHHHHHHHHHH--------------------HHhhCCC--chHHHHHHHH
Confidence 3577777777543 5566778888888888887 4444332 443 4999
Q ss_pred HHHHHHhhccHHHHHHHHHhc
Q 000428 1125 VAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1125 lgka~l~~~~v~eAI~~Yika 1145 (1520)
+|-+|...|++++|+++|.+|
T Consensus 118 LAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 118 KACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999997
No 280
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=65.25 E-value=3.2e+02 Score=35.65 Aligned_cols=180 Identities=12% Similarity=0.157 Sum_probs=105.6
Q ss_pred CCcEEEEehhhhccccccc-cCCceeEEEeccCCeEEEEecCc-EEEEeccCCCCccchhhcccCCCC--CeEEEeeeCC
Q 000428 91 QDHLQIFNIELKAKIKSHQ-MSEQVVFWKWISPKMLGVVTQTS-VYHWSIEGDSEPVKMFDRTANLTN--NQIINYKCDP 166 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~-~~e~vvfWkWis~~~l~lVT~~a-VyHW~i~~~~~P~k~f~R~~~L~~--~qIi~Y~~~~ 166 (1520)
-.+|.|||+++.+.|.... -.++| .=-=++...+.-+|... |=+|++. .|.--.+|.+ .++..-..+.
T Consensus 310 D~tVkVW~v~n~~~l~l~~~h~~~V-~~v~~~~~~lvsgs~d~~v~VW~~~-------~~~cl~sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRGHTGPV-NCVQLDEPLLVSGSYDGTVKVWDPR-------TGKCLKSLSGHTGRVYSLIVDS 381 (537)
T ss_pred CceEEEEeccCcceEEEeccccccE-EEEEecCCEEEEEecCceEEEEEhh-------hceeeeeecCCcceEEEEEecC
Confidence 4779999999999888766 33333 33334456666666555 8899875 2444445554 3666665555
Q ss_pred CCCeEEEEeccCCCCCCCccccceEEEeecccc--cccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEE
Q 000428 167 TEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ--RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHV 244 (1520)
Q Consensus 167 ~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~--~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i 244 (1520)
. |.++.|- +.|.|+.|+.+++ ..+.+.||-+.=..+.+.++ .+ ..-+.. +++++
T Consensus 382 ~--~~~~Sgs----------~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~-----~L--vs~~aD-----~~Ik~ 437 (537)
T KOG0274|consen 382 E--NRLLSGS----------LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN-----FL--VSSSAD-----GTIKL 437 (537)
T ss_pred c--ceEEeee----------eccceEeecCCchhhhhhhhcCCcccccccccccc-----ee--Eecccc-----ccEEE
Confidence 5 8888884 4699999999998 77888888765433322222 11 111111 23444
Q ss_pred EecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCc
Q 000428 245 IELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDP 315 (1520)
Q Consensus 245 ~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~ 315 (1520)
=++.. ++.. +...- | .=+.|+.+-.. --.|..-+..|.+.+||+.+|+++... ++.+.
T Consensus 438 WD~~~--~~~~---~~~~~--~----~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l-~~~~~ 495 (537)
T KOG0274|consen 438 WDAEE--GECL---RTLEG--R----HVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL-LSTDL 495 (537)
T ss_pred eeccc--Ccee---eeecc--C----CcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh-hhccc
Confidence 33321 1110 00000 0 01122221111 346778889999999999999999877 55543
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.18 E-value=9 Score=29.95 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
|..+|.+|..+|+|++|+++.++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 678899999999999999999985
No 282
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=64.91 E-value=1.9e+02 Score=35.04 Aligned_cols=248 Identities=19% Similarity=0.233 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCC----ccccccCcccccccCC---------cceeeeeccCCCCCCCcEEEEehhhhccccccccC--
Q 000428 47 QNSVVIIDMNQPMQ----PLRRPITADSALMNPN---------SRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMS-- 111 (1520)
Q Consensus 47 ~~~v~Ivdl~~~~~----~~r~pi~AdsAimnP~---------~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~-- 111 (1520)
|.++.+-|+.|=.+ -+|-+..+| ||+ +-|++++ . |..|.||-+..|+- ++..++
T Consensus 107 Dr~Ir~w~~~DF~~~eHr~~R~nve~d----hpT~V~FapDc~s~vv~~~-~-----g~~l~vyk~~K~~d-G~~~~~~v 175 (420)
T KOG2096|consen 107 DRSIRLWDVRDFENKEHRCIRQNVEYD----HPTRVVFAPDCKSVVVSVK-R-----GNKLCVYKLVKKTD-GSGSHHFV 175 (420)
T ss_pred CceEEEEecchhhhhhhhHhhccccCC----CceEEEECCCcceEEEEEc-c-----CCEEEEEEeeeccc-CCCCcccc
Confidence 34888888877333 466666677 665 3577787 5 99999999887754 554441
Q ss_pred -Cc-eeEEEeccCCeEEEEe-cCcEEEEeccCCCCccchhhcccC-C---CCCeEEEe--eeCCCCCeEEEEeccCCCCC
Q 000428 112 -EQ-VVFWKWISPKMLGVVT-QTSVYHWSIEGDSEPVKMFDRTAN-L---TNNQIINY--KCDPTEKWLVLIGIAPGSAE 182 (1520)
Q Consensus 112 -e~-vvfWkWis~~~l~lVT-~~aVyHW~i~~~~~P~k~f~R~~~-L---~~~qIi~Y--~~~~~~kW~~l~Gi~~~~~~ 182 (1520)
+| ..|=+==+..+|-|-+ ++++|.-+...+..-. +.+..+. | .-.|.-|| +++|++..++.+|..|++--
T Consensus 176 ~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~-lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkV 254 (420)
T KOG2096|consen 176 HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC-LWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKV 254 (420)
T ss_pred cccccccchhcccceEEEeecCCceEEEEecCCCcEE-EEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceE
Confidence 11 2222222333333322 3444443332111111 1111122 2 22455555 68999999999999855432
Q ss_pred CCc--cccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCC--CCCCCccc
Q 000428 183 RPQ--LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQ--PGKPSFTK 258 (1520)
Q Consensus 183 ~~~--~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~--~~~~~f~k 258 (1520)
=+. .-+|..|=- +.--.|-||-++-..+-+.+ .|.=.+-+.| . |+.+|-+++-. .++.|+.-
T Consensus 255 wE~~f~kdG~fqev----~rvf~LkGH~saV~~~aFsn---~S~r~vtvSk--D-----G~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 255 WEPIFTKDGTFQEV----KRVFSLKGHQSAVLAAAFSN---SSTRAVTVSK--D-----GKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEEEeccCcchhhh----hhhheeccchhheeeeeeCC---CcceeEEEec--C-----CcEEEeeccceEecCCCchHh
Confidence 111 223433311 11112346655554443333 3444455555 2 56777777542 34445443
Q ss_pred ccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhh-hhcccCCCceEEeeccC
Q 000428 259 KQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAV-YRNRISPDPIFLTSEAS 323 (1520)
Q Consensus 259 k~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i-~~~rIs~~~iF~~~~~~ 323 (1520)
|. .+.|-.+++.=|+-+..|+. |-++-++-..-||+|-.|+|.-. --.||.+.+|=.-+.++
T Consensus 321 k~--g~~pl~aag~~p~RL~lsP~-g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 321 KE--GSAPLHAAGSEPVRLELSPS-GDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred hc--CCcchhhcCCCceEEEeCCC-CcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 43 33677888999999998876 55666777788999999998654 34577777765544433
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.62 E-value=1.3e+02 Score=38.60 Aligned_cols=213 Identities=13% Similarity=0.173 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHH
Q 000428 1237 NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISL 1316 (1520)
Q Consensus 1237 N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~L 1316 (1520)
.+..++.||..++. ++-+..|..+.++|++.-.+ -.+|+.+||. ++...++.+
T Consensus 101 al~el~q~y~en~n----------~~l~~lWer~ve~dfnDvv~----------------~ReLa~~yEk-ik~sk~a~~ 153 (711)
T COG1747 101 ALLELLQCYKENGN----------EQLYSLWERLVEYDFNDVVI----------------GRELADKYEK-IKKSKAAEF 153 (711)
T ss_pred HHHHHHHHHHhcCc----------hhhHHHHHHHHHhcchhHHH----------------HHHHHHHHHH-hchhhHHHH
Confidence 34456677766543 34478998888999843222 3589999997 999999999
Q ss_pred HHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhc------hHHHHHHHHh---------hcchHHHHHH-HH
Q 000428 1317 MESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLN------IPKLIRACDE---------QQHWKELTYL-YI 1380 (1520)
Q Consensus 1317 le~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iN------i~K~i~~ce~---------~~lW~E~vfL-y~ 1380 (1520)
|.+++ |+ .| |.+-|..+|.-|.++. -.++++.... ...--|-||- |.
T Consensus 154 f~Ka~---------yr--fI------~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 154 FGKAL---------YR--FI------PRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH---------HH--hc------chhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 98773 23 33 7777778887777772 2334433321 1112223332 33
Q ss_pred hhccHHHHHHHH---HhcCchhhcchhhHHHHHhhhh-------hHHH---------HHHHH-------HHHhh------
Q 000428 1381 QYDEFDNAATTI---MNHSPEAWDHMQFKDVAVKVAN-------VELY---------YKAVH-------FYLQE------ 1428 (1520)
Q Consensus 1381 ~~~e~d~A~~~m---i~h~~~a~~h~~fk~ii~kvan-------~ely---------Ykai~-------FyL~~------ 1428 (1520)
..++|++|+.++ .+| |.=+|...++++..+.+ +|=| -|-.. +|+-.
T Consensus 217 ~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFV 294 (711)
T COG1747 217 ENENWTEAIRILKHILEH--DEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFV 294 (711)
T ss_pred cccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceE
Confidence 356899998654 456 44556667777766643 1111 11111 11100
Q ss_pred ---------------CcchHHHH-------------HHHHhh-----------cCCHHHHHHHHHhcCCccchHHHHHHH
Q 000428 1429 ---------------HPDLINDL-------------LNVLAL-----------RVDHTRVVDIMRKAGHLLLVKPYMVAV 1469 (1520)
Q Consensus 1429 ---------------~P~~l~dl-------------L~~l~~-----------rlD~~rvV~~~~k~~~ipLik~yL~~v 1469 (1520)
+...+-|+ +.+|.| -+||+-.-.++++.-.| -|+=-+.+.
T Consensus 295 fHqtWgVG~i~~VsfqqkvlidF~~~rah~I~femA~saL~pLs~edi~vlk~v~~~d~laa~arkdpew-Aikviiks~ 373 (711)
T COG1747 295 FHQTWGVGEIMGVSFQQKVLIDFEGRRAHDISFEMAFSALQPLSKEDIFVLKRVGDPDDLAAFARKDPEW-AIKVIIKSL 373 (711)
T ss_pred EecccccceeeecccccceeeeehhhhhhhhhHHHHHHHhCcCCccceehhhhcCCHHHHHHHHhhChHH-HHHHHHHhc
Confidence 00011111 223332 45666666666655443 466778888
Q ss_pred hhcChHHHHHHHHHHhhhhhhhHHHHH
Q 000428 1470 QSNNVSAVNEALNEIYVEEEDYERLRE 1496 (1520)
Q Consensus 1470 q~~n~~~Vneal~~l~ieeed~~~Lr~ 1496 (1520)
.+.|.+.|-+-|-.++|-++|+.+--.
T Consensus 374 ~~~nlKeIK~ELVpsli~e~dWnsWsq 400 (711)
T COG1747 374 GPKNLKEIKQELVPSLIPEGDWNSWSQ 400 (711)
T ss_pred CCccHHHHHHHHHHhhCChhhhhHHHH
Confidence 999999999999999999999966443
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=64.38 E-value=3.7e+02 Score=33.71 Aligned_cols=194 Identities=12% Similarity=0.186 Sum_probs=100.8
Q ss_pred cceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCe--EEEEec----CcEEEEeccCCCCccchhhc
Q 000428 77 SRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKM--LGVVTQ----TSVYHWSIEGDSEPVKMFDR 150 (1520)
Q Consensus 77 ~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~--l~lVT~----~aVyHW~i~~~~~P~k~f~R 150 (1520)
.+|+++-.. .|.....|.|-|.+-.. -+..+-.....+=+|-.+.. +++++. ..||-+++.+ .++.++++-
T Consensus 155 ~r~~~v~~~-~~~~~~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~~~lt~~ 231 (419)
T PRK04043 155 KRKVVFSKY-TGPKKSNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKKEKIASS 231 (419)
T ss_pred eeEEEEEEc-cCCCcceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcEEEEecC
Confidence 355555421 12113578887776553 22233334566777876643 444433 3488888853 355555542
Q ss_pred ccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecc--cccccccchhhc--cceeeecCCCCCCceEE
Q 000428 151 TANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVD--QQRSQALEAHAA--SFAQFKVPGNENPSVLI 226 (1520)
Q Consensus 151 ~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~e--r~~sQ~ieghaa--~F~~~~~~g~~~~~~l~ 226 (1520)
. -.....+.++|++|+++.--. .|..|+|..+ .+..+.|-.+.+ ....+..+ .+-+
T Consensus 232 ~-----g~~~~~~~SPDG~~la~~~~~----------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPD-----G~~I 291 (419)
T PRK04043 232 Q-----GMLVVSDVSKDGSKLLLTMAP----------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVED-----DKRI 291 (419)
T ss_pred C-----CcEEeeEECCCCCEEEEEEcc----------CCCcEEEEEECCCCcEEEcccCCCccCccEECCC-----CCEE
Confidence 1 123456789999999887632 3556777664 344444443332 22333332 3355
Q ss_pred EEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEecc---------ceEEE
Q 000428 227 SFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKL---------GLLFV 297 (1520)
Q Consensus 227 ~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~---------G~l~l 297 (1520)
+|....... ..|.+++++.. .. + .+.+.... . | .+|+.-+.|..++.. .-|++
T Consensus 292 ~F~Sdr~g~----~~Iy~~dl~~g--~~--~----rlt~~g~~--~-~---~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 292 VFVSDRLGY----PNIFMKKLNSG--SV--E----QVVFHGKN--N-S---SVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred EEEECCCCC----ceEEEEECCCC--Ce--E----eCccCCCc--C-c---eECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 666543222 56888888542 21 1 11221111 1 1 556555534333332 37999
Q ss_pred EeccchhhhhhcccCCC
Q 000428 298 YDLETAAAVYRNRISPD 314 (1520)
Q Consensus 298 yDl~tg~~i~~~rIs~~ 314 (1520)
+|++||.. .+++..
T Consensus 354 ~d~~~g~~---~~LT~~ 367 (419)
T PRK04043 354 ISTNSDYI---RRLTAN 367 (419)
T ss_pred EECCCCCe---EECCCC
Confidence 99999863 445543
No 285
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.81 E-value=2.2e+02 Score=39.33 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=60.6
Q ss_pred HHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhcccc-HHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChh
Q 000428 1187 LIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTL-YEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAK 1265 (1520)
Q Consensus 1187 lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~-YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k 1265 (1520)
++.-|+.++++.+|- ..+|+|+.++|+ -..|..+|--..+-+|++.|..+.++.+. +..
T Consensus 576 ~i~t~~~~~~~~elc-----------~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w~~~~~~~~---------~~~ 635 (1049)
T KOG0307|consen 576 AICTYAQTDEFSELC-----------DMLGDRLENAGDLTSAAILCYICAGSVDKLVEIWLKALDLEL---------APT 635 (1049)
T ss_pred HHHHhcchhhHHHHH-----------HHHHHHHhhccchhhhhhHHhhhccChhhhHHHHHHhccccc---------chH
Confidence 455566654444443 447999999995 45677777777777777777777665541 122
Q ss_pred hHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHH----HhcCCHHHHHHHHHhh
Q 000428 1266 TWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYY----QNRGYFNELISLMESG 1320 (1520)
Q Consensus 1266 ~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Y----e~~G~f~eLI~Lle~g 1320 (1520)
.+.+ +..|+-..--++++..|. ..+-+-+..+...| -.+|.+.-|++++.--
T Consensus 636 ~y~~-~~e~l~~~~~~l~~~~~~--~~~s~~l~~~~~~yanllasQG~~~~A~~~l~~~ 691 (1049)
T KOG0307|consen 636 SYQD-LAEDLMELTLKLAQFSAN--KTYSAGLAKKFSEYANLLASQGALAAAMSFLPLL 691 (1049)
T ss_pred HHHH-HHHHHHHHHhhhhhcccC--ccccHHHHHHHHHHHHHHHhcChHHHHHhhcCcC
Confidence 2222 112221222355554442 22222233333333 3578888888877544
No 286
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.32 E-value=1.4e+02 Score=36.76 Aligned_cols=233 Identities=14% Similarity=0.212 Sum_probs=122.9
Q ss_pred cccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCc---EEEEeccC------
Q 000428 70 SALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTS---VYHWSIEG------ 140 (1520)
Q Consensus 70 sAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~a---VyHW~i~~------ 140 (1520)
+.|.||...++|+-.. -.++++||.+|++-..+-+=-++-||===++....+|||-++ +.-|+.+.
T Consensus 113 ~v~~hp~~~~v~~as~-----d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k 187 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASE-----DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK 187 (406)
T ss_pred eeeeccCceEEEEecC-----CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH
Confidence 3578999999988633 578999999999865444433444555556888889998654 77898842
Q ss_pred ----CC-CccchhhcccC---CCC---CeEEE---------eeeCCCCCeEEEEeccCCCCCCCccccc------eEEEe
Q 000428 141 ----DS-EPVKMFDRTAN---LTN---NQIIN---------YKCDPTEKWLVLIGIAPGSAERPQLVKG------NMQLF 194 (1520)
Q Consensus 141 ----~~-~P~k~f~R~~~---L~~---~qIi~---------Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G------~mQLy 194 (1520)
.+ .-.+||-+.-. |++ ..|-- |..-+-..|.=.+-+. ++|+|-| .+-+|
T Consensus 188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~-----~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN-----QDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec-----CCeeEEEecCCCceEEEE
Confidence 11 11222222210 000 01111 1111222366666665 4554443 56677
Q ss_pred eccccc-ccccchhh-----ccce------eee-cCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccc
Q 000428 195 SVDQQR-SQALEAHA-----ASFA------QFK-VPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQA 261 (1520)
Q Consensus 195 S~er~~-sQ~iegha-----a~F~------~~~-~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~ 261 (1520)
.++.+. -+.+-+|- -+|+ ++. -.|+..+.+.+.-+.|.. -+.+.||..+ -.-|+-..-
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-------tIk~wdv~tg--~cL~tL~gh 333 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-------TIKIWDVSTG--MCLFTLVGH 333 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-------eEEEEeccCC--eEEEEEecc
Confidence 777662 23333331 1111 111 112334556666555532 2445555332 111111110
Q ss_pred cccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEc
Q 000428 262 DLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAIN 332 (1520)
Q Consensus 262 d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn 332 (1520)
+..=-.+-+++.=..|+=+--.|-|++||+.+++|.-.-- .-+-|+++.+=...--++|+
T Consensus 334 ---------dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 334 ---------DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred ---------cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEe
Confidence 1111122334444467777788999999999999975543 77889888754433334343
No 287
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=63.27 E-value=51 Score=36.71 Aligned_cols=111 Identities=16% Similarity=0.284 Sum_probs=65.8
Q ss_pred eecccCCCCCCCCcccc------cceeee--cCeeEEEEecCCCCeEEEEEcCCCCCccccc-cCcccccccCCcceeee
Q 000428 12 EVLTLPSVGINPQFITF------TNVTME--SDKYICVRETAPQNSVVIIDMNQPMQPLRRP-ITADSALMNPNSRILAL 82 (1520)
Q Consensus 12 e~~~L~~lGi~~~~i~f------~~~t~e--Sdk~icvre~~~~~~v~Ivdl~~~~~~~r~p-i~AdsAimnP~~~iiAl 82 (1520)
+++-+..-+++...+.. ..+.++ |++|+++-...+ .+|.+-|+. ...+..-+ ....+..-+|..+.||+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~-~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP-AKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVL 117 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC-cccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEE
Confidence 44444444444444422 234444 567766644332 388888875 33222222 12345678899999999
Q ss_pred eccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEEE
Q 000428 83 KAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGV 127 (1520)
Q Consensus 83 ra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~l 127 (1520)
-+. |.....|++||++++++++.+.- ..++...|=.+-.--+
T Consensus 118 ~g~--~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 118 AGF--GNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEc--cCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEE
Confidence 752 11135699999999999988765 3577888875544433
No 288
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.27 E-value=38 Score=35.68 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=59.6
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc--------------------CHHHHHHHHHHhcCHHHHHHHHHHhC---------
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS--------------------NWAKLAVTLVKLKQFQGAVDAARKAN--------- 1262 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~--------------------N~~kLA~~lv~L~~y~~Ave~AkKa~--------- 1262 (1520)
..+.|++-..+|.|++|-.+|.+.. -++-|+..+..||+|+++...|-+|-
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3567888899999999999998776 24456888999999999999988752
Q ss_pred ---ChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhc
Q 000428 1263 ---SAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGL 1321 (1520)
Q Consensus 1263 ---~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl 1321 (1520)
.-+.| -+.| | .=...++..|..+|++..|.++.
T Consensus 92 ~qdeGklW----IaaV----f------------------sra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 92 HQDEGKLW----IAAV----F------------------SRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp TSTHHHHH----HHHH----H------------------HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccchhH----HHHH----H------------------HHHHHHHhcCChHHHHHHHHHHH
Confidence 22345 1222 1 11244688999999999999885
No 289
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=61.93 E-value=2.5e+02 Score=37.01 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=107.2
Q ss_pred cCcEEEEeccCC-----CCccchhhcccCCCC-CeEEEeeeCCCCCeEEEEeccCCCCCCCc----cccceEEEeecccc
Q 000428 130 QTSVYHWSIEGD-----SEPVKMFDRTANLTN-NQIINYKCDPTEKWLVLIGIAPGSAERPQ----LVKGNMQLFSVDQQ 199 (1520)
Q Consensus 130 ~~aVyHW~i~~~-----~~P~k~f~R~~~L~~-~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~----~i~G~mQLyS~er~ 199 (1520)
+..|--|+++.. -+|.+++.-. +.+ .-|..-..+|++.|.+..-.+ . -- .-+|++ +.++
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~--~k~~~nIs~~aiSPdg~~Ia~st~~----~-~~iy~L~~~~~v----k~~~ 420 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLF--TKEKENISCAAISPDGNLIAISTVS----R-TKIYRLQPDPNV----KVIN 420 (691)
T ss_pred cccccceeccCcccccccChhhheeee--cCCccceeeeccCCCCCEEEEeecc----c-eEEEEeccCcce----eEEE
Confidence 556667877432 2555555433 444 457778889999999887644 1 00 112211 1222
Q ss_pred ccc-ccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEE
Q 000428 200 RSQ-ALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQ 278 (1520)
Q Consensus 200 ~sQ-~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mq 278 (1520)
+.- +++--.||=..+..+++ ++.++.+ +- ..|++.|.+.+.+ |.-.++ .|.+..+.=--|-
T Consensus 421 v~~~~~~~~~a~~i~ftid~~-----k~~~~s~--~~----~~le~~el~~ps~-----kel~~~--~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 421 VDDVPLALLDASAISFTIDKN-----KLFLVSK--NI----FSLEEFELETPSF-----KELKSI--QSQAKCPSISRLV 482 (691)
T ss_pred eccchhhhccceeeEEEecCc-----eEEEEec--cc----ceeEEEEecCcch-----hhhhcc--ccccCCCcceeEE
Confidence 222 22223455555555543 4444442 22 5699999876532 222221 2333333333456
Q ss_pred eccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeec---cCCCCcEEEEcCCCcEEEEEeecCc
Q 000428 279 ISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSE---ASSLGGFYAINRRGQVLLATVNEAT 346 (1520)
Q Consensus 279 vs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~---~~~~~Gi~~Vn~~GqVl~v~i~~~~ 346 (1520)
+|+-=.-|-++|-.|-||+|+++|++. .-=++.=++++|+. ....+-++...-++||....|+..+
T Consensus 483 ~SsdG~yiaa~~t~g~I~v~nl~~~~~--~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 483 VSSDGNYIAAISTRGQIFVYNLETLES--HLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred EcCCCCEEEEEeccceEEEEEccccee--ecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 666666899999999999999999763 22222223566654 2445667777799999999996666
No 290
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.83 E-value=65 Score=37.93 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=93.0
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHH---HHHHHHHh-CCCh-HHH----HHH
Q 000428 1003 SAAVKAFMTAD-LPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRV---MDYVNRLD-NFDG-PAV----GEV 1072 (1520)
Q Consensus 1003 s~~Vkaf~~a~-lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl---~~yI~~ld-nyd~-~~I----A~i 1072 (1520)
-.-|..++..+ +-++--.++|++. |. |. |..++ ..-|++|. .|-. ++| |..
T Consensus 35 ~~~~~~~~k~~~~g~e~w~l~EqV~----------------IA-Al--d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 35 GSEVLNYSKSGALGDEIWTLYEQVF----------------IA-AL--DTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred HHHHHHHhhhcccCchHHHHHHHHH----------------HH-HH--HhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 34566666666 6677677888733 21 11 22221 33455543 5522 222 777
Q ss_pred HHHcCCHHHHHHHHHh--cCC-cHHHH-----HHHHHhhhh---HHHHHHHHHH-hCChhHHHHHHHHHHhhccHHHHHH
Q 000428 1073 AVEAQLYEEAFAIFKK--FNL-NVQAV-----NVLLDNIRS---IERAVEFAFR-VEEDAVWSQVAKAQLREGLVSDAIE 1140 (1520)
Q Consensus 1073 a~e~~L~EEA~~LYkK--~~~-~~~Ai-----~vLi~~~~~---~~~A~e~Aek-~~~~eVw~~lgka~l~~~~v~eAI~ 1140 (1520)
.+-.|+|++|..+|.. .+. -+.++ .+++...+. ++.-.+|.++ .+++|.|..++..|+..|+++.|+=
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 8889999999998875 111 22222 222222222 3344455555 7899999999999999999999999
Q ss_pred HHHhc-----CCcchHH---HHHHHHHhcCChhHHHHHHHHHh
Q 000428 1141 SFIRA-----DDATQFL---DVIRAAEDADVYHDLVRYLLMVR 1175 (1520)
Q Consensus 1141 ~Yika-----~d~s~~~---evi~~a~~a~~~e~Li~yL~m~r 1175 (1520)
+|.+. -+|-+|. ++.++---+++.+.--+|+..|-
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99886 3444433 66666555666666666666433
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=61.59 E-value=12 Score=28.99 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
|..+|.+|.++|+|++|++..+++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 567899999999999999998885
No 292
>PRK01029 tolB translocation protein TolB; Provisional
Probab=61.46 E-value=4.2e+02 Score=33.29 Aligned_cols=191 Identities=14% Similarity=0.164 Sum_probs=97.0
Q ss_pred eEEEEecCCCCeEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhh-----cccccccc
Q 000428 38 YICVRETAPQNSVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELK-----AKIKSHQM 110 (1520)
Q Consensus 38 ~icvre~~~~~~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k-----~klks~~~ 110 (1520)
|+-+....+..+|.+.|+..+.. ++..|-..-+.-..|..+-||.-..-.|.....+++|++++. .++-....
T Consensus 201 ~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 201 YLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 43344444334999999976532 121222223445678887777753101111234666887752 12211111
Q ss_pred CCceeEEEeccC-CeEEEEec----CcEEEEeccCC-CCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCC
Q 000428 111 SEQVVFWKWISP-KMLGVVTQ----TSVYHWSIEGD-SEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERP 184 (1520)
Q Consensus 111 ~e~vvfWkWis~-~~l~lVT~----~aVyHW~i~~~-~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~ 184 (1520)
. ...-=.|-.+ +.|+.++. ..+|.+++++. ..|..+.... ..+..-..++|++|++.++-. .
T Consensus 281 ~-~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~-----~~~~~p~wSPDG~~Laf~~~~------~ 348 (428)
T PRK01029 281 G-TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY-----RNSSCPAWSPDGKKIAFCSVI------K 348 (428)
T ss_pred C-CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC-----CCccceeECCCCCEEEEEEcC------C
Confidence 1 1111256434 46888874 24788877543 3344443221 244566789999999998844 1
Q ss_pred ccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCC
Q 000428 185 QLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGA 249 (1520)
Q Consensus 185 ~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~ 249 (1520)
+ ...+.+|..+.+..+.+-........... +...+.+.|.....+. ..|.++.++.
T Consensus 349 g--~~~I~v~dl~~g~~~~Lt~~~~~~~~p~w---SpDG~~L~f~~~~~g~----~~L~~vdl~~ 404 (428)
T PRK01029 349 G--VRQICVYDLATGRDYQLTTSPENKESPSW---AIDSLHLVYSAGNSNE----SELYLISLIT 404 (428)
T ss_pred C--CcEEEEEECCCCCeEEccCCCCCccceEE---CCCCCEEEEEECCCCC----ceEEEEECCC
Confidence 1 24677777766655544322111111111 1223445554432222 6788888754
No 293
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=60.52 E-value=3.7e+02 Score=32.61 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=52.6
Q ss_pred CcEEEEehhhhccccccccCCceeEEEec-cCCeEEEEecCcEEEEeccCC--------C-------Cc-----cchhhc
Q 000428 92 DHLQIFNIELKAKIKSHQMSEQVVFWKWI-SPKMLGVVTQTSVYHWSIEGD--------S-------EP-----VKMFDR 150 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~e~vvfWkWi-s~~~l~lVT~~aVyHW~i~~~--------~-------~P-----~k~f~R 150 (1520)
..+-|+|+++++.-.-..-...+.+=+|= +.+.|+.|-+..+|.++..+. . -| ..||+|
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 45888999996443333335678899998 788999999999999987321 1 22 257888
Q ss_pred ccCC----CCCeEEEeeeCCCC
Q 000428 151 TANL----TNNQIINYKCDPTE 168 (1520)
Q Consensus 151 ~~~L----~~~qIi~Y~~~~~~ 168 (1520)
...+ .+.+|.-++.|..+
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~ 124 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDERE 124 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TT
T ss_pred ccceEECCCCCEEEEEEECCcC
Confidence 7776 35777777777765
No 294
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=60.39 E-value=1.2e+02 Score=37.98 Aligned_cols=136 Identities=14% Similarity=0.345 Sum_probs=85.7
Q ss_pred eeeecCeeEEEEecCCCCeEEEEEcCCCCCccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhc-------
Q 000428 31 VTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKA------- 103 (1520)
Q Consensus 31 ~t~eSdk~icvre~~~~~~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~------- 103 (1520)
++-.+|+++|.-+...+.++..+--. .+. +.--||..||...|.+.=.. ...|.|||+....
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~-----v~~ts~~fHpDgLifgtgt~-----d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDE-TSD-----VEYTSAAFHPDGLIFGTGTP-----DGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeec-ccc-----ceeEEeeEcCCceEEeccCC-----CceEEEEEcCCccccccCCC
Confidence 55667889999888766544433321 222 44568999999999988643 6789999987664
Q ss_pred ---cccccccCCceeEEEeccCCeEEEEecCc-EEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCC
Q 000428 104 ---KIKSHQMSEQVVFWKWISPKMLGVVTQTS-VYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPG 179 (1520)
Q Consensus 104 ---klks~~~~e~vvfWkWis~~~l~lVT~~a-VyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~ 179 (1520)
++|+..|.|. -|| |+.-++.. |.-|++-- -|-|.-.+.=.+-.+..|..|.+++.+++.|-
T Consensus 388 ht~~vk~i~FsEN-GY~-------Lat~add~~V~lwDLRK----l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~--- 452 (506)
T KOG0289|consen 388 HTGPVKAISFSEN-GYW-------LATAADDGSVKLWDLRK----LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS--- 452 (506)
T ss_pred CCCceeEEEeccC-ceE-------EEEEecCCeEEEEEehh----hcccceeeccccccceeEEEcCCCCeEEeecc---
Confidence 3444445433 233 34444444 99998832 11232222222345889999999998877652
Q ss_pred CCCCCccccceEEEeeccccccc
Q 000428 180 SAERPQLVKGNMQLFSVDQQRSQ 202 (1520)
Q Consensus 180 ~~~~~~~i~G~mQLyS~er~~sQ 202 (1520)
.+|.|-+.++.-|
T Consensus 453 ----------~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 453 ----------DLQVYICKKKTKS 465 (506)
T ss_pred ----------eeEEEEEeccccc
Confidence 3788877755433
No 295
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=60.08 E-value=4.6e+02 Score=33.33 Aligned_cols=217 Identities=13% Similarity=0.185 Sum_probs=123.6
Q ss_pred CCC-eEEEEEcCCCCCccccccC-----cccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccc-ccccCCceeEEE
Q 000428 46 PQN-SVVIIDMNQPMQPLRRPIT-----ADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIK-SHQMSEQVVFWK 118 (1520)
Q Consensus 46 ~~~-~v~Ivdl~~~~~~~r~pi~-----AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klk-s~~~~e~vvfWk 118 (1520)
++. ++.+.|+..+.+..+.--+ |--+..||...+.|=.+ -..|.+|++-.|..+. .+..|.+|.=-.
T Consensus 15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~------rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLK------RPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred CCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeeccc------CccccccccCchhhhhhhcccccceeeee
Confidence 445 8999999998886664333 44467788777777664 3589999999999888 556676654221
Q ss_pred eccCCeEEEEe---cCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEee
Q 000428 119 WISPKMLGVVT---QTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFS 195 (1520)
Q Consensus 119 Wis~~~l~lVT---~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS 195 (1520)
-++.-.=+|. ....|-|.+... .--.++.+| ..+ |.--+.+.|++- ++.| +++ |.+-.|+
T Consensus 89 -s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aH--YQ~--ITcL~fs~dgs~-iiTg------skD----g~V~vW~ 151 (476)
T KOG0646|consen 89 -SSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAH--YQS--ITCLKFSDDGSH-IITG------SKD----GAVLVWL 151 (476)
T ss_pred -cCCCceEEEeecccCcEEEEEeccc-cHHHHHHhh--ccc--eeEEEEeCCCcE-EEec------CCC----ccEEEEE
Confidence 1222222333 368999999532 445566777 222 333444555543 3344 334 4444444
Q ss_pred ccccccc----------ccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccC
Q 000428 196 VDQQRSQ----------ALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFF 265 (1520)
Q Consensus 196 ~er~~sQ----------~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~f 265 (1520)
+-.=+++ .+-+|+-+-.++++.-....+-|+.-. - . .-..+-++... . --..+-|
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~--D-----~t~k~wdlS~g--~-----LLlti~f 216 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-E--D-----RTIKLWDLSLG--V-----LLLTITF 216 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-C--C-----ceEEEEEeccc--e-----eeEEEec
Confidence 4443333 234566666666553333222222211 1 1 11333344321 1 1111222
Q ss_pred CCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhh
Q 000428 266 PPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAA 305 (1520)
Q Consensus 266 pp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~ 305 (1520)
| --|-||-+.+---++|+-|.-|-|++.++++...
T Consensus 217 p-----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 217 P-----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG 251 (476)
T ss_pred C-----CcceeEEEcccccEEEecCCcceEEeeehhcCCc
Confidence 2 2245678888888999999999999999988664
No 296
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.66 E-value=90 Score=37.11 Aligned_cols=112 Identities=20% Similarity=0.191 Sum_probs=78.9
Q ss_pred HHHHHHHhhCChhhHHHHhcC-cCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCCh
Q 000428 1186 ELIYAYAKIDRLGDIEEFILM-PNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSA 1264 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~ele~fl~~-~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~ 1264 (1520)
.++.-+.|..++..+.+-|.. ....+.+.--+.+.++|+|-+|..++....+- +..++.|.-.-++..+ -
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~------l~~l~~~~c~~~L~~~---L 173 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQL------LEELKGYSCVRHLSSQ---L 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------HHhcccchHHHHHhHH---H
Confidence 367778888888888777665 44555566677788999999999988876543 2346777777777777 6
Q ss_pred hhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHH
Q 000428 1265 KTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNE 1312 (1520)
Q Consensus 1265 k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~e 1312 (1520)
..|.+.+..++++ .|...|+ .-+|+....+...|.-.|+...
T Consensus 174 ~e~~~~i~~~ld~---~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 174 QETLELIEEQLDS---DLSKVCQ---DFDPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred HHHHHHHHHHHHH---HHHHHHH---hCCHHHHHHHHHHHHHHhhhHH
Confidence 6777778888864 4544444 4677777888888776665433
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.49 E-value=4.4e+02 Score=34.34 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=53.6
Q ss_pred CcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEe
Q 000428 272 DFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATV 342 (1520)
Q Consensus 272 DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i 342 (1520)
-.+++...|+-..-+.+-.-.|-|++||..+++..+. +..=-|.|++-- ++++=+++.|.+|++--.-+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEc-CCCcEEEEEcCCceEEEEEe
Confidence 6789999999999999999999999999999987755 666667777763 44444556678897765544
No 298
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.82 E-value=2.1e+02 Score=35.59 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=79.7
Q ss_pred ceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCc--ceeEEeccccceEEEEeccceEEEEec
Q 000428 223 SVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDF--PVAMQISHKYGLIYVITKLGLLFVYDL 300 (1520)
Q Consensus 223 ~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DF--Pv~mqvs~k~g~iyviTK~G~l~lyDl 300 (1520)
-+|++++...+.+ ++..-.+....++ .|.+-..- ..+| =-+|-||+.=.++-|-|.-|-|-+||.
T Consensus 244 ~~l~laa~~~~~~-----~v~~~~~~~w~~~-~~l~~~~~-------~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 244 ETLRLAASQFPGG-----GVRLCDISLWSGS-NFLRLRKK-------IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDA 310 (398)
T ss_pred ceEEEEEecCCCC-----ceeEEEeeeeccc-cccchhhh-------hhccCcceeEEEcCCCcEEEEeccCCcEEEEEe
Confidence 6788888887764 4666677665554 33221111 2333 237899999999999999999999999
Q ss_pred cchhhhhhcccCCCceEEee----ccCCCCcEEEEcCCCcEEEEEeecC---ccccchhccc
Q 000428 301 ETAAAVYRNRISPDPIFLTS----EASSLGGFYAINRRGQVLLATVNEA---TIVPFVSGQL 355 (1520)
Q Consensus 301 ~tg~~i~~~rIs~~~iF~~~----~~~~~~Gi~~Vn~~GqVl~v~i~~~---~ivpyi~~~l 355 (1520)
.+-.++|--+=.+.. |||. |++...+=+.-.-.=.|+++++|.. ...|++...+
T Consensus 311 ~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~~~~~~~~~~ 371 (398)
T KOG0771|consen 311 KSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLHRLPKRRKIP 371 (398)
T ss_pred ceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEEEEeecccccccccccchhhh
Confidence 999999888877777 7773 3333333322334457888888665 4555555443
No 299
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.28 E-value=9.9 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhhcCccccccc
Q 000428 1296 DLEEVSEYYQNRGYFNELISLMESGLGLERAHMG 1329 (1520)
Q Consensus 1296 ~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~ 1329 (1520)
-...+...|.+.|++++++.+|++++.....+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 3457789999999999999999999877665433
No 300
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=56.96 E-value=49 Score=44.26 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=75.3
Q ss_pred HhhCchHHHHHHHHHhC--CCh----HHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChh
Q 000428 1047 IKADPSRVMDYVNRLDN--FDG----PAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDA 1120 (1520)
Q Consensus 1047 ~k~d~~kl~~yI~~ldn--yd~----~~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~e 1120 (1520)
++.|-+|-...|+++-- .|. .++|.-|.+.|+|+.|+.||+-.|.|+.|+.++-... ++-+..+.
T Consensus 600 i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L---------S~~l~~~~ 670 (835)
T KOG2168|consen 600 IKPDGSREPGLLDEFLPLIEDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL---------SQVLHSPT 670 (835)
T ss_pred cCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH---------HHHHhhcc
Confidence 55555555555544432 333 3458889999999999999999999999999886643 11111121
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHh--cCCcchHHH-------------HHHHHHhcCChhHHHHHHHHHhhhcCCcchhH
Q 000428 1121 VWSQVAKAQLREGLVSDAIESFIR--ADDATQFLD-------------VIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS 1185 (1520)
Q Consensus 1121 Vw~~lgka~l~~~~v~eAI~~Yik--a~d~s~~~e-------------vi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~ 1185 (1520)
.|...+. +..+.+.+.-. .-++.+... .++-.|+.++++.-.+-|+.-+.+-.+|..-.
T Consensus 671 ~~~~n~e------rl~~La~~~~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~~~~~v~ 744 (835)
T KOG2168|consen 671 LGQSNKE------RLGDLALSMNDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLIPLDPLSVD 744 (835)
T ss_pred cCCcchh------hHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCChhhhh
Confidence 1111111 11112211111 123333332 45667788999999999987666655555544
Q ss_pred HHHHHHHh
Q 000428 1186 ELIYAYAK 1193 (1520)
Q Consensus 1186 ~lv~~yAk 1193 (1520)
.++..+.+
T Consensus 745 ~~~~~~~~ 752 (835)
T KOG2168|consen 745 EIVANFRN 752 (835)
T ss_pred HHHHHHHh
Confidence 44444443
No 301
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=55.91 E-value=9.6 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.2
Q ss_pred cceEEEEeccceEEEEeccchhhhh
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVY 307 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~ 307 (1520)
-|.+|+.|..|.+|-+|.+||..+.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4689999999999999999998764
No 302
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=55.73 E-value=44 Score=42.98 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHH
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLM 1317 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Ll 1317 (1520)
|.-+|..+...|++++|....++|-.-... -+| ..-+.+.|+..|++++|+..|
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------------~~a-------------~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEMS-------------WLN-------------YVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------HHH-------------HHHHHHHHHHcCCHHHHHHHH
Confidence 334567777789999999999996543211 123 235678899999999999999
Q ss_pred HhhcCccccccc
Q 000428 1318 ESGLGLERAHMG 1329 (1520)
Q Consensus 1318 e~gl~lerAh~~ 1329 (1520)
+++..++..+..
T Consensus 477 ~~A~~L~P~~pt 488 (517)
T PRK10153 477 STAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCCCch
Confidence 999988888654
No 303
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.41 E-value=27 Score=46.55 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=68.9
Q ss_pred cCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchH-HHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHH
Q 000428 1178 VKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANL-QNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVD 1256 (1520)
Q Consensus 1178 ~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave 1256 (1520)
++||+.--+|..- .|+++...++-...+.+++ +.+|+-...+|..+-|-.+|++..||.+|..+|.--|..++=.+
T Consensus 643 VkD~~tRF~LaLe---~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 643 VKDERTRFELALE---CGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred ecCcchheeeehh---cCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHH
Confidence 6777776665553 3777777777777777887 88999999999999999999999999999999999999888888
Q ss_pred HHHHhC
Q 000428 1257 AARKAN 1262 (1520)
Q Consensus 1257 ~AkKa~ 1262 (1520)
.++.|.
T Consensus 720 m~~iae 725 (1202)
T KOG0292|consen 720 MMKIAE 725 (1202)
T ss_pred HHHHHH
Confidence 888763
No 304
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.35 E-value=5.4e+02 Score=32.63 Aligned_cols=233 Identities=17% Similarity=0.119 Sum_probs=113.1
Q ss_pred HhhhhccccHHHHHHHHHhhc-----CHHHH---HHHHHHhcCHHHHHHHHHHhCChhhHH-HHHHHHhcchhhhHHHhh
Q 000428 1216 GDRLYDDTLYEAAKIIYAFIS-----NWAKL---AVTLVKLKQFQGAVDAARKANSAKTWK-EVCFACVDAEEFRLAQIC 1286 (1520)
Q Consensus 1216 gd~~~eeg~YeaAk~~y~~~~-----N~~kL---A~~lv~L~~y~~Ave~AkKa~~~k~wk-~v~~acv~~~e~rLA~~~ 1286 (1520)
++++.-.|+|..|...=..+. |-..| ++|+-++++.+.|+.-..++-..+.=+ +.+.+|..-+..+--...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 344455555555544332222 22222 555556666666666666655444332 233333332222222222
Q ss_pred ccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHh-----ccChhhhHHHHHHHHHhhchHH
Q 000428 1287 GLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYA-----RYRYEKLMEHIKLFSTRLNIPK 1361 (1520)
Q Consensus 1287 gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyA-----ky~pekLmehlk~y~~~iNi~K 1361 (1520)
.+.--++|++.++-..|.-|++++..|.. | ++.||. ..+..++-|.+..=....+|.
T Consensus 256 --------------gN~~fk~G~y~~A~E~Yteal~idP~n~~--~-naklY~nra~v~~rLgrl~eaisdc~~Al~iD- 317 (486)
T KOG0550|consen 256 --------------GNDAFKNGNYRKAYECYTEALNIDPSNKK--T-NAKLYGNRALVNIRLGRLREAISDCNEALKID- 317 (486)
T ss_pred --------------hhhHhhccchhHHHHHHHHhhcCCccccc--h-hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-
Confidence 24556799999999999999999998855 3 444443 334555556555533333332
Q ss_pred HHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCc-chH--HHHHH
Q 000428 1362 LIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHP-DLI--NDLLN 1438 (1520)
Q Consensus 1362 ~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P-~~l--~dlL~ 1438 (1520)
++.+..|..-++-..++...-++ |.+.+ +|+.=-...-+ ..+ ..+-.
T Consensus 318 -----------~syikall~ra~c~l~le~~e~A----------------V~d~~---~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 318 -----------SSYIKALLRRANCHLALEKWEEA----------------VEDYE---KAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH---HHHhhccccchHHHHHHHHHHH
Confidence 22222222222222222222222 22211 11111111000 111 11222
Q ss_pred HHhhcCCHHHHHHHHHhcCCccchHHH-HHHHhhcChHHH---HHHHHHHhhhhhhhHHHHH
Q 000428 1439 VLALRVDHTRVVDIMRKAGHLLLVKPY-MVAVQSNNVSAV---NEALNEIYVEEEDYERLRE 1496 (1520)
Q Consensus 1439 ~l~~rlD~~rvV~~~~k~~~ipLik~y-L~~vq~~n~~~V---neal~~l~ieeed~~~Lr~ 1496 (1520)
.-.+|.|+=++....+.....|..+.| +..++||=...+ .||=+.|--=.++|.-|++
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d 429 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSD 429 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcC
Confidence 345788888888888888888888888 445666533322 3344444434455555554
No 305
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=55.09 E-value=3.5e+02 Score=33.86 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=45.8
Q ss_pred ceeEEeccccceEEEEeccceEEEEeccchhhhhhcccC------------CCceEEeeccCCCCcEEEEcCCCcEEEEE
Q 000428 274 PVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRIS------------PDPIFLTSEASSLGGFYAINRRGQVLLAT 341 (1520)
Q Consensus 274 Pv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs------------~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~ 341 (1520)
-+.|-+|..++.|-+.|..|.+++....-.+++..-.+. +|.|.++- .+.+..|+..|+=....
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~----~~~l~lvg~~~~~~~~~ 294 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW----EDELLLVGPDGDSISFW 294 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe----CCEEEEECCCCCceEEe
Confidence 467899999999999999999988765544444433333 34555544 24577777777665555
Q ss_pred eecC
Q 000428 342 VNEA 345 (1520)
Q Consensus 342 i~~~ 345 (1520)
.+..
T Consensus 295 ~~~~ 298 (410)
T PF04841_consen 295 YDGP 298 (410)
T ss_pred ccCc
Confidence 5544
No 306
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.06 E-value=4.6e+02 Score=31.76 Aligned_cols=230 Identities=13% Similarity=0.181 Sum_probs=132.2
Q ss_pred CcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecCcEEEEeccCCCCc-cchhhcccCCCCCeEEEeeeCCCCC-
Q 000428 92 DHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEP-VKMFDRTANLTNNQIINYKCDPTEK- 169 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P-~k~f~R~~~L~~~qIi~Y~~~~~~k- 169 (1520)
..+.-|+.+ .-+.+.|.++..+.-=-+++..-.-+++++.+++|+.+. ..- +.+++....+..+.-=.=++++++.
T Consensus 47 ~~i~r~~~~-~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~-~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~ 124 (307)
T COG3386 47 GRIHRLDPE-TGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDT-GGKITLLAEPEDGLPLNRPNDGVVDPDGRI 124 (307)
T ss_pred CeEEEecCC-cCceEEEECCCCcccceeecCCCeEEEEccccEEEeccC-CceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence 334444444 234566677777777778889999999999999998842 223 4555555555444444556666653
Q ss_pred eEEEEe---ccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCC---CCCceEEEEEEecCCCCcccceEE
Q 000428 170 WLVLIG---IAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGN---ENPSVLISFATKSFNAGQVTSKLH 243 (1520)
Q Consensus 170 W~~l~G---i~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~---~~~~~l~~fa~r~~~~~~~~~kL~ 243 (1520)
|+--+| .. ....+-.|.+=-|+-.-++..++.+| +..++. ++.-+.|-++.- .. .++|
T Consensus 125 wfgt~~~~~~~----~~~~~~~G~lyr~~p~g~~~~l~~~~------~~~~NGla~SpDg~tly~aDT-~~-----~~i~ 188 (307)
T COG3386 125 WFGDMGYFDLG----KSEERPTGSLYRVDPDGGVVRLLDDD------LTIPNGLAFSPDGKTLYVADT-PA-----NRIH 188 (307)
T ss_pred EEeCCCccccC----ccccCCcceEEEEcCCCCEEEeecCc------EEecCceEECCCCCEEEEEeC-CC-----CeEE
Confidence 555555 11 22334556433333333455555555 223222 223334444432 11 5788
Q ss_pred EEecCCCCCCCCccc-ccccccCCCCCCCCcceeEEeccccceEEEEeccc--eEEEEeccchhhhhhcccC--------
Q 000428 244 VIELGAQPGKPSFTK-KQADLFFPPDFADDFPVAMQISHKYGLIYVITKLG--LLFVYDLETAAAVYRNRIS-------- 312 (1520)
Q Consensus 244 i~Ei~~~~~~~~f~k-k~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G--~l~lyDl~tg~~i~~~rIs-------- 312 (1520)
-...+...+. ...+ ..++..+.| --|=+|.+ +.-|-||+..-.| =|+.|+.. |..+-.-++-
T Consensus 189 r~~~d~~~g~-~~~~~~~~~~~~~~----G~PDG~~v-DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 189 RYDLDPATGP-IGGRRGFVDFDEEP----GLPDGMAV-DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred EEecCcccCc-cCCcceEEEccCCC----CCCCceEE-eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 8888763332 2222 233333333 34555655 4557777666554 99999999 9888777766
Q ss_pred -----CCceEEeeccCCCCcEEEE-cCCCcEEEEEeecCc
Q 000428 313 -----PDPIFLTSEASSLGGFYAI-NRRGQVLLATVNEAT 346 (1520)
Q Consensus 313 -----~~~iF~~~~~~~~~Gi~~V-n~~GqVl~v~i~~~~ 346 (1520)
.+++|+|+..+.....+.- ...|+++++.+.-..
T Consensus 262 FgG~~~~~L~iTs~~~~~~~~~~~~~~~G~lf~~~~~~~G 301 (307)
T COG3386 262 FGGPDLNTLYITSARSGMSRMLTADPLGGGLFSLRLEVKG 301 (307)
T ss_pred EeCCCcCEEEEEecCCCCCccccccccCceEEEEecccCC
Confidence 3778888765533233332 367888888876553
No 307
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=53.99 E-value=1.2e+02 Score=38.04 Aligned_cols=135 Identities=18% Similarity=0.380 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCccccccCccc-----ccccCC-cceeeeeccCCCCCCCcEEEEehhhh-ccccccccCCceeE-EEec
Q 000428 49 SVVIIDMNQPMQPLRRPITADS-----ALMNPN-SRILALKAQLPGTTQDHLQIFNIELK-AKIKSHQMSEQVVF-WKWI 120 (1520)
Q Consensus 49 ~v~Ivdl~~~~~~~r~pi~Ads-----AimnP~-~~iiAlra~~~~~~g~~lQiFnle~k-~klks~~~~e~vvf-WkWi 120 (1520)
.+.|.|+..+.+..+++.+|-+ +-.||. ..|||-=++ -++|++||+..- +++-++.-.++-|| -.|=
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-----D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA-----DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC-----CCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 8899999875556777788743 456776 578888754 688999999764 45555554556444 4554
Q ss_pred --cCCeEEEE-ecCcEEEEecc--C---------CCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCcc
Q 000428 121 --SPKMLGVV-TQTSVYHWSIE--G---------DSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQL 186 (1520)
Q Consensus 121 --s~~~l~lV-T~~aVyHW~i~--~---------~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~ 186 (1520)
.++.||.= |+..|-.|++. | +++|.-+|-..+.- ..|..+.=++.+-|++..- ++
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsWnp~ePW~I~Sv------ae--- 394 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSWNPNEPWTIASV------AE--- 394 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc--cccccccCCCCCCeEEEEe------cC---
Confidence 33334432 56779999993 1 23555566554444 4699999999999998766 22
Q ss_pred ccceEEEeeccccc
Q 000428 187 VKGNMQLFSVDQQR 200 (1520)
Q Consensus 187 i~G~mQLyS~er~~ 200 (1520)
.+.+|.|.+.+.+
T Consensus 395 -DN~LqIW~~s~~i 407 (422)
T KOG0264|consen 395 -DNILQIWQMAENI 407 (422)
T ss_pred -CceEEEeeccccc
Confidence 4899999887765
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=53.60 E-value=20 Score=27.88 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
|..+|.+|..+|++++|.+..+++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678999999999999999998854
No 309
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.21 E-value=21 Score=47.50 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=82.4
Q ss_pred HhhCchHHHHHHHHHhCCChHHHHHHHHHcCCHHHHHHHHHh-cCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHH
Q 000428 1047 IKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKK-FNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQV 1125 (1520)
Q Consensus 1047 ~k~d~~kl~~yI~~ldnyd~~~IA~ia~e~~L~EEA~~LYkK-~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~l 1125 (1520)
+..+++.|+..| +-.|.=+..+..+..+.|-.|.|...-+- .-+|.-|++ . +.++-|+|.|.+.+++++|++|
T Consensus 605 i~k~ydeVl~lI-~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe----~-gnle~ale~akkldd~d~w~rL 678 (1202)
T KOG0292|consen 605 LNKKYDEVLHLI-KNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALE----C-GNLEVALEAAKKLDDKDVWERL 678 (1202)
T ss_pred HhhhhHHHHHHH-HhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehh----c-CCHHHHHHHHHhcCcHHHHHHH
Confidence 445667777766 45577777777788888888888764432 123544443 3 4788999999999999999999
Q ss_pred HHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 000428 1126 AKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMV 1174 (1520)
Q Consensus 1126 gka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~ 1174 (1520)
|.+-+..|+..=|--+|-+.++ |..+-+...-.|+.|-|.+...-|
T Consensus 679 ge~Al~qgn~~IaEm~yQ~~kn---fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 679 GEEALRQGNHQIAEMCYQRTKN---FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHHHHhcchHHHHHHHHHhhh---hhheeEEEEEeCCHHHHHHHHHHH
Confidence 9999999988888888877554 333333333346666555555543
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=52.77 E-value=6.4e+02 Score=32.77 Aligned_cols=72 Identities=10% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCcccc-ccchhHHHHHHHhccChhhhHHHHHH-HHHhhchHHHHHHHHhhcchHH
Q 000428 1297 LEEVSEYYQNRGYFNELISLMESGLGLERA-HMGIFTELGVLYARYRYEKLMEHIKL-FSTRLNIPKLIRACDEQQHWKE 1374 (1520)
Q Consensus 1297 l~elv~~Ye~~G~f~eLI~Lle~gl~lerA-h~~~fTeLailyAky~pekLmehlk~-y~~~iNi~K~i~~ce~~~lW~E 1374 (1520)
++++-.+|....+|+|+|..+.--+.++.. |-+ ++.+.+.+|. |...-|+...+....-.+.|..
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a-------------r~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rn 274 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILEHDEKDVWA-------------RKEIIENLRDKYRGHSQLEEYLKISNISQSGRN 274 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH-------------HHHHHHHHHHHhccchhHHHHHHhcchhhcccc
Confidence 578889999999999999999877766644 322 5677777777 6666677766666666688888
Q ss_pred HHHHHHh
Q 000428 1375 LTYLYIQ 1381 (1520)
Q Consensus 1375 ~vfLy~~ 1381 (1520)
.++.|..
T Consensus 275 f~~~l~d 281 (711)
T COG1747 275 FFEALND 281 (711)
T ss_pred HHHHHHH
Confidence 8887755
No 311
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=52.02 E-value=33 Score=42.28 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred ccccceEEEee-cccccccccchhh-ccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEec-----CCCCCCCCcc
Q 000428 185 QLVKGNMQLFS-VDQQRSQALEAHA-ASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIEL-----GAQPGKPSFT 257 (1520)
Q Consensus 185 ~~i~G~mQLyS-~er~~sQ~iegha-a~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei-----~~~~~~~~f~ 257 (1520)
|+..+++-+|+ ..-...+.+++|. -+=.++. .....|+.+ +|..+ |.++++ -++...++|
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls----~~g~~lLss-sRDdt-------l~viDlRt~eI~~~~sA~g~- 384 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLS----MDGLELLSS-SRDDT-------LKVIDLRTKEIRQTFSAEGF- 384 (459)
T ss_pred cccccceEEEeccCCceeeEeecCcceeeEeec----cCCeEEeee-cCCCc-------eeeeecccccEEEEeecccc-
Confidence 57788899998 4444444444443 2222333 344667777 55433 444443 222222233
Q ss_pred cccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCc--eEEeeccCCCCcEEEEcCCC
Q 000428 258 KKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDP--IFLTSEASSLGGFYAINRRG 335 (1520)
Q Consensus 258 kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~--iF~~~~~~~~~Gi~~Vn~~G 335 (1520)
|-+ .| =-..++|+--..+---+..|-||||++.||.+-+.-.-+..+ |+..+-++.+.|.+..++.+
T Consensus 385 k~a----------sD-wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 385 KCA----------SD-WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ccc----------cc-cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 112 22 123345555555555678899999999999999999999888 99988899999999999887
Q ss_pred cEE
Q 000428 336 QVL 338 (1520)
Q Consensus 336 qVl 338 (1520)
-|-
T Consensus 454 ~v~ 456 (459)
T KOG0288|consen 454 AVT 456 (459)
T ss_pred ceE
Confidence 663
No 312
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=50.90 E-value=31 Score=42.89 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=53.6
Q ss_pred CcceeEEeccccceEEEEeccceEEEEecc------chhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeec
Q 000428 272 DFPVAMQISHKYGLIYVITKLGLLFVYDLE------TAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNE 344 (1520)
Q Consensus 272 DFPv~mqvs~k~g~iyviTK~G~l~lyDl~------tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~ 344 (1520)
+=+|+|.+++.-.+| +|++.|.+++||+. .|..+-...|...-||.+.. -.+|+++.+.+++++.|.=.+
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~--~~~GivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF--YKNGIVVLTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCccccccccccc--CCCCEEEECCCCeEEEEeCcc
Confidence 678999999966665 99999999999995 45566666776666776543 247899999999998884333
No 313
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=50.49 E-value=11 Score=30.91 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=26.0
Q ss_pred ceEEEEeccceEEEEeccchhhhhhcccCC
Q 000428 284 GLIYVITKLGLLFVYDLETAAAVYRNRISP 313 (1520)
Q Consensus 284 g~iyviTK~G~l~lyDl~tg~~i~~~rIs~ 313 (1520)
|.||+-|..|+|+-+|..||..+.+-+...
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 689999999999999999999987766543
No 314
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.48 E-value=1.2e+02 Score=35.49 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=46.2
Q ss_pred HHHHHHHH----HHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHH--HHHHHHhcCChhHHHHHHH
Q 000428 1106 IERAVEFA----FRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLD--VIRAAEDADVYHDLVRYLL 1172 (1520)
Q Consensus 1106 ~~~A~e~A----ek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~e--vi~~a~~a~~~e~Li~yL~ 1172 (1520)
+++|+.+. .+.+.|+++..+|+.+...+.+.+|-.+|+.++|++.+.. .+......+.+.+-=-|+.
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~ 145 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIA 145 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHH
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 44566666 4578999999999999999999999999999999999876 5555555555555444443
No 315
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=50.37 E-value=1.3e+02 Score=38.55 Aligned_cols=178 Identities=15% Similarity=0.204 Sum_probs=106.1
Q ss_pred CeEEEeeeCCCCCeEEEEeccCCCCCC---CccccceEEEeec-----------ccccccccchhhccceeeecCCCCCC
Q 000428 157 NQIINYKCDPTEKWLVLIGIAPGSAER---PQLVKGNMQLFSV-----------DQQRSQALEAHAASFAQFKVPGNENP 222 (1520)
Q Consensus 157 ~qIi~Y~~~~~~kW~~l~Gi~~~~~~~---~~~i~G~mQLyS~-----------er~~sQ~ieghaa~F~~~~~~g~~~~ 222 (1520)
-+|..+|.-...--|+.+++. .. .|.+.|.||+|++ -+..+-.+.||..|=-.+-+... +
T Consensus 335 epi~tfraH~gPVl~v~v~~n----~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~ 408 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSN----GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--K 408 (577)
T ss_pred eeeEEEecccCceEEEEecCC----ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--c
Confidence 467777777777777777754 22 2489999999944 44566778888777644444443 3
Q ss_pred ceEEEEEEecCCCCcccceEEEEecCCC-C---------CCC---------------Cccccc----------ccccCCC
Q 000428 223 SVLISFATKSFNAGQVTSKLHVIELGAQ-P---------GKP---------------SFTKKQ----------ADLFFPP 267 (1520)
Q Consensus 223 ~~l~~fa~r~~~~~~~~~kL~i~Ei~~~-~---------~~~---------------~f~kk~----------~d~~fpp 267 (1520)
.+|+.+.. . |+++..|...- + |-| .|..+- .-.+|+.
T Consensus 409 ~~Llscs~---D-----gTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s 480 (577)
T KOG0642|consen 409 DRLLSCSS---D-----GTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES 480 (577)
T ss_pred cceeeecC---C-----ceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc
Confidence 33444421 1 45555554221 1 101 111110 1122332
Q ss_pred CC---CCCcceeEEe-ccc-cceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEe
Q 000428 268 DF---ADDFPVAMQI-SHK-YGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATV 342 (1520)
Q Consensus 268 ~~---~~DFPv~mqv-s~k-~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i 342 (1520)
.+ +.++|-..+| |.. -++.|-.--.+-|.+||.-||.+|+..++.-+.+=--+-+.++.=++..+.+|.|..-.+
T Consensus 481 ~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 22 4556655543 322 246666667789999999999999999999887655555554444666778888887766
Q ss_pred ecCccc
Q 000428 343 NEATIV 348 (1520)
Q Consensus 343 ~~~~iv 348 (1520)
|.-+.+
T Consensus 561 d~k~~~ 566 (577)
T KOG0642|consen 561 DVKTCV 566 (577)
T ss_pred cchhee
Confidence 655443
No 316
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=50.37 E-value=17 Score=45.98 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=42.1
Q ss_pred cceEEEEeccceEEEEeccchhhhhhcccC-------CCceEEeecc---------------CCCCcEEEEc-CCCcEE
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYRNRIS-------PDPIFLTSEA---------------SSLGGFYAIN-RRGQVL 338 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~~rIs-------~~~iF~~~~~---------------~~~~Gi~~Vn-~~GqVl 338 (1520)
..+||+.|+.|.++-+|.+||..+.+.+++ ++.||+.+.+ +..+++.+++ +.|+++
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~ 379 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV 379 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence 358999999999999999999999986653 4668886532 2345677777 667654
No 317
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.00 E-value=1.6e+02 Score=36.82 Aligned_cols=51 Identities=22% Similarity=0.169 Sum_probs=44.0
Q ss_pred HHHHHHHhhCChhhHHHH------hcCcCcchHHHHHhhhhccccHHHHHHHHHhhc
Q 000428 1186 ELIYAYAKIDRLGDIEEF------ILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS 1236 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~ele~f------l~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~ 1236 (1520)
.|..||-|++++...... +...|+.++..-|..|...|+|+.|+..|..+-
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 488999999998887554 456888899999999999999999999999764
No 318
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=49.96 E-value=8.4e+02 Score=33.31 Aligned_cols=241 Identities=15% Similarity=0.229 Sum_probs=133.4
Q ss_pred cCCCCCCCCcccccceeeecCeeEEEEecCCCCeEEEEEcCCCCCc-cccccCcccccccCCcceeeeeccC---CCCCC
Q 000428 16 LPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQP-LRRPITADSALMNPNSRILALKAQL---PGTTQ 91 (1520)
Q Consensus 16 L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~~v~Ivdl~~~~~~-~r~pi~AdsAimnP~~~iiAlra~~---~~~~g 91 (1520)
.+.+|.-.+.+-|...+.-|+=||++.-.. +..+-|-..-+-+ .-+|+ | ++|-||.+.. =-.-|
T Consensus 27 fR~lG~vsn~VP~~~~~~~~~~~vtt~vgk---sfqvYd~~kl~ll~vs~~l--------p-~~I~alas~~~~vy~A~g 94 (910)
T KOG1539|consen 27 FRALGYVSNGVPFRVVALGSTFYVTTCVGK---SFQVYDVNKLNLLFVSKPL--------P-DKITALASDKDYVYVASG 94 (910)
T ss_pred hhhhceecCCCceeeeecCceEEEEEecCc---eEEEEeccceEEEEecCCC--------C-CceEEEEecCceEEEecC
Confidence 344566666666888999998888776532 2333332211110 00111 1 3455555300 00003
Q ss_pred CcEEEEehhhhccccccccC---CceeEEEeccCCeEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCC
Q 000428 92 DHLQIFNIELKAKIKSHQMS---EQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTE 168 (1520)
Q Consensus 92 ~~lQiFnle~k~klks~~~~---e~vvfWkWis~~~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~ 168 (1520)
+.+.+|- +.|.-.|... -+|.+-.=+.+++||+.++..+|.|...+...|. ..|+..|....+.
T Consensus 95 ~~i~~~~---rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~----------~l~~~~~~~~~~~ 161 (910)
T KOG1539|consen 95 NKIYAYA---RGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL----------YLQSTFLKVEGDF 161 (910)
T ss_pred cEEEEEE---ccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccc----------cccceeeeccCCc
Confidence 3333332 2222222221 1466666788999999999999999885434443 1234444444332
Q ss_pred ----------CeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcc
Q 000428 169 ----------KWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQV 238 (1520)
Q Consensus 169 ----------kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~ 238 (1520)
===+++|.+ .|.||||++..+. +++-..+-+
T Consensus 162 Ital~HP~TYLNKIvvGs~----------~G~lql~Nvrt~K------------------------~v~~f~~~~----- 202 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSS----------QGRLQLWNVRTGK------------------------VVYTFQEFF----- 202 (910)
T ss_pred eeeEecchhheeeEEEeec----------CCcEEEEEeccCc------------------------EEEEecccc-----
Confidence 112344544 7899999876553 111111111
Q ss_pred cceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEE
Q 000428 239 TSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFL 318 (1520)
Q Consensus 239 ~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~ 318 (1520)
+.+..+| -|+--+||-|-|-.|-||+|.+-.+..|+.=|.-...|=-
T Consensus 203 -s~IT~ie--------------------------------qsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vts 249 (910)
T KOG1539|consen 203 -SRITAIE--------------------------------QSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTS 249 (910)
T ss_pred -cceeEec--------------------------------cCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeE
Confidence 1233333 2344567888899999999999999999987776444433
Q ss_pred eeccCCCCcEEEEcCC-CcEEEEEeecCccccchhc
Q 000428 319 TSEASSLGGFYAINRR-GQVLLATVNEATIVPFVSG 353 (1520)
Q Consensus 319 ~~~~~~~~Gi~~Vn~~-GqVl~v~i~~~~ivpyi~~ 353 (1520)
-+-.+++.-++++.++ |-..---+++..++.-+.|
T Consensus 250 lSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 250 LSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred EEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 3333444446666655 7666667777777766544
No 319
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=49.30 E-value=6.6e+02 Score=31.91 Aligned_cols=166 Identities=10% Similarity=0.039 Sum_probs=103.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHh-----CChhHHHHHHHHHHhhccHHHHHHHHHhcCC-----cchHHHHHHHHHhcCCh
Q 000428 1095 AVNVLLDNIRSIERAVEFAFRV-----EEDAVWSQVAKAQLREGLVSDAIESFIRADD-----ATQFLDVIRAAEDADVY 1164 (1520)
Q Consensus 1095 Ai~vLi~~~~~~~~A~e~Aek~-----~~~eVw~~lgka~l~~~~v~eAI~~Yika~d-----~s~~~evi~~a~~a~~~ 1164 (1520)
+..++-+. +.++||+-|++|+ +.-+-+-.=|.+.+..+|.++|+-.|=.|.+ -++|.-++.+..-.+..
T Consensus 306 ~~~~l~~~-K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDE-KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhh-hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 44444443 3688999999973 2233344457888899999999999987743 45777777766666665
Q ss_pred hHHHHHHHHHhhh-cCCcchhHH--HH--HHHHhhCCh-hhHHHHhcC------cCcchHHHHHhhhhccccHHHHHHHH
Q 000428 1165 HDLVRYLLMVRQK-VKEPKVDSE--LI--YAYAKIDRL-GDIEEFILM------PNVANLQNVGDRLYDDTLYEAAKIIY 1232 (1520)
Q Consensus 1165 e~Li~yL~m~r~~-~~ep~id~~--lv--~~yAk~~~l-~ele~fl~~------~N~a~v~~vgd~~~eeg~YeaAk~~y 1232 (1520)
.+- +-|||.. ..-|..-.. |+ ...+-+... .+.+.|... .-...|..+++.|--||.|+.+..+.
T Consensus 385 kEA---~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEA---NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHH---HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 443 3344432 000111111 11 111111111 234556433 34567788999999999998887776
Q ss_pred Hhhc-------CHHHHHHHHHHhcCHHHHHHHHHHhCCh
Q 000428 1233 AFIS-------NWAKLAVTLVKLKQFQGAVDAARKANSA 1264 (1520)
Q Consensus 1233 ~~~~-------N~~kLA~~lv~L~~y~~Ave~AkKa~~~ 1264 (1520)
.++- -..+||-+++--+++|+|.+.+.+|-.-
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6543 4567788888888999999998887543
No 320
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=48.76 E-value=25 Score=41.21 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=47.8
Q ss_pred ceEEEEeccceEEEEeccchhhhhhcccCCCceEEeec--cC-CCCcEEEEcCCCcEEEE
Q 000428 284 GLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSE--AS-SLGGFYAINRRGQVLLA 340 (1520)
Q Consensus 284 g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~--~~-~~~Gi~~Vn~~GqVl~v 340 (1520)
+.+.+-|-.|.|++.|.++-+.+..-++.+=|+|+.+. +. -..-|++..|+|.|+.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 46788999999999999999999999999999997765 32 33347778899999876
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=47.62 E-value=1.1e+02 Score=37.42 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.5
Q ss_pred hHHHHHhhhhccccHHHHHHHHHhhc--------CHHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1211 NLQNVGDRLYDDTLYEAAKIIYAFIS--------NWAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1211 ~v~~vgd~~~eeg~YeaAk~~y~~~~--------N~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
.+.+-|+.+|..|.|++|..+|+... -|..=|..|.++++|..|-.-+..|
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 37889999999999999999999754 3556699999999998876544444
No 322
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=47.54 E-value=4.6e+02 Score=29.61 Aligned_cols=146 Identities=13% Similarity=0.290 Sum_probs=80.7
Q ss_pred ecCcEEEEeccCCCCccchhhcccCCCCCeEEEeee-CCCCCeEEEEeccCCCCCCCccccceEEEeeccc--ccccccc
Q 000428 129 TQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKC-DPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ--QRSQALE 205 (1520)
Q Consensus 129 T~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~-~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er--~~sQ~ie 205 (1520)
.+..|..|+..+.......+.-... ..+..+.. +.+.++.++.. + ...|.+.+|..+. .....+.
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~--------~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLHD---SSVSKLALSSPDGNSILLAS-S--------SLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccCC---CceeeEEEECCCcceEEecc-C--------CCCccEEEEEecCCCeEEEEEe
Confidence 3567777766543322222222111 34444444 66666433332 2 3578999999996 8888899
Q ss_pred hhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccce
Q 000428 206 AHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGL 285 (1520)
Q Consensus 206 ghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~ 285 (1520)
+|....-.+.+..+.. .++.+.. .. +.+.+..+.....-..+.. ..+....+..+ ..|-
T Consensus 153 ~~~~~v~~~~~~~~~~---~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~ 211 (466)
T COG2319 153 GHSESVTSLAFSPDGK---LLASGSS--LD----GTIKLWDLRTGKPLSTLAG-----------HTDPVSSLAFS-PDGG 211 (466)
T ss_pred cCcccEEEEEECCCCC---EEEecCC--CC----CceEEEEcCCCceEEeecc-----------CCCceEEEEEc-CCcc
Confidence 9988777665554433 3333321 12 5677777754111001100 23444445555 3332
Q ss_pred EEEE--eccceEEEEeccchhhhh
Q 000428 286 IYVI--TKLGLLFVYDLETAAAVY 307 (1520)
Q Consensus 286 iyvi--TK~G~l~lyDl~tg~~i~ 307 (1520)
.+++ ...|.+++||..+|.++.
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEe
Confidence 3333 588999999998887776
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.36 E-value=8.7e+02 Score=33.47 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHH----hcCChhHHHHHHHHHh--hhcCCcchhHHHHHHH
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAE----DADVYHDLVRYLLMVR--QKVKEPKVDSELIYAY 1191 (1520)
Q Consensus 1118 ~~eVw~~lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~----~a~~~e~Li~yL~m~r--~~~~ep~id~~lv~~y 1191 (1520)
-++++..=+......|...+||+.=++|+||+.-+.++.-+. +.++-..+..+++..= ....+|++--.-+...
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~ 425 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLL 425 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHH
Confidence 366777767777789999999999999999999888887762 2233333333333100 0144555433323333
Q ss_pred HhhCChhhHHHH
Q 000428 1192 AKIDRLGDIEEF 1203 (1520)
Q Consensus 1192 Ak~~~l~ele~f 1203 (1520)
+-..++++.+..
T Consensus 426 ~s~~r~~ea~~l 437 (894)
T COG2909 426 ASQHRLAEAETL 437 (894)
T ss_pred HHccChHHHHHH
Confidence 334556555544
No 324
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=47.34 E-value=2.3e+02 Score=36.38 Aligned_cols=203 Identities=14% Similarity=0.146 Sum_probs=119.8
Q ss_pred cccCCcceeeeeccCCCCCCCcEEEEehhhh-cccccc---ccC---CceeEEEecc--CCeEEEEecCcEEEEeccCCC
Q 000428 72 LMNPNSRILALKAQLPGTTQDHLQIFNIELK-AKIKSH---QMS---EQVVFWKWIS--PKMLGVVTQTSVYHWSIEGDS 142 (1520)
Q Consensus 72 imnP~~~iiAlra~~~~~~g~~lQiFnle~k-~klks~---~~~---e~vvfWkWis--~~~l~lVT~~aVyHW~i~~~~ 142 (1520)
--||..+=+-|-.. +-.+|.|||++.- +.++-+ .+. -+|.=-.|=- ...-|=|-+.+|=.|+..+-.
T Consensus 275 ~whP~~k~~FlT~s----~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCS----YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ccccCcccceEEec----CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc
Confidence 35777665566532 2567999998743 222211 111 1233333332 233456778999999985533
Q ss_pred CccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCC--C
Q 000428 143 EPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGN--E 220 (1520)
Q Consensus 143 ~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~--~ 220 (1520)
--..+.-|.+.+.+.-|..-..+.|++-++-=| -.+.+-||+..+ --+++--..+-|.-+...+- +
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-----------~D~tLKvWDLrq-~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG-----------FDDTLKVWDLRQ-FKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchhhhcc-----------CCCceeeeeccc-cccchhhhcCCCccCCCCccccC
Confidence 333466788889999999999999988776444 567888998754 33444333333322222111 2
Q ss_pred CCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEec
Q 000428 221 NPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDL 300 (1520)
Q Consensus 221 ~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl 300 (1520)
..-.|+...+-.++|. ..|+|.+.+-- .|. ....|+|+ +--=|..++-+|.+.|++-+-.|-+|+|.-
T Consensus 419 Pd~kli~TGtS~~~~~-~~g~L~f~d~~------t~d-~v~ki~i~----~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGM-TAGTLFFFDRM------TLD-TVYKIDIS----TASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCceEEEecccccCCC-CCceEEEEecc------cee-eEEEecCC----CceEEEEeecchhhheeeecCCCceEEEEC
Confidence 2333433333333331 12566666531 131 23345555 445577899999999999999999999865
Q ss_pred cc
Q 000428 301 ET 302 (1520)
Q Consensus 301 ~t 302 (1520)
.+
T Consensus 487 p~ 488 (641)
T KOG0772|consen 487 PN 488 (641)
T ss_pred cc
Confidence 44
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=47.31 E-value=26 Score=24.74 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
|..+|.+|...++++.|+...+++-
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678999999999999999888753
No 326
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=46.95 E-value=33 Score=41.12 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=52.3
Q ss_pred cccc-eEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecCccccchhcccCCHH
Q 000428 281 HKYG-LIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLE 359 (1520)
Q Consensus 281 ~k~g-~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~~ivpyi~~~l~n~~ 359 (1520)
+|+| .||.-|..|-+++||.+|-.|+-+-||+. +++ -. =|.|.++|..+-+.--+..|--|=.+-+-+
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~----IK-~I~~s~~g~~liiNtsDRvIR~ye~~di~~-- 230 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQA----IK-QIIVSRKGRFLIINTSDRVIRTYEISDIDD-- 230 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech----hee----ee-EEEEeccCcEEEEecCCceEEEEehhhhcc--
Confidence 4444 89999999999999999999999999988 111 11 233555565555555555555553332211
Q ss_pred HHHHHHHhcCCCCchHHHHHH
Q 000428 360 LAVNLAKRGNLPGAENLVVQR 380 (1520)
Q Consensus 360 la~~la~r~~lpgad~l~~~~ 380 (1520)
-.|.|-|.++-=|.+-
T Consensus 231 -----~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 231 -----EGRDGEVEPEHKLQDV 246 (405)
T ss_pred -----cCccCCcChhHHHHHH
Confidence 2356666654444433
No 327
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=46.83 E-value=1.6e+02 Score=39.48 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=81.7
Q ss_pred ccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCC
Q 000428 187 VKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFP 266 (1520)
Q Consensus 187 i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fp 266 (1520)
-.|.+=+|+++.+-.|.|=--++.-..+.+. +.+++++.+.- . -++|++=...-+- |..+.-+-|
T Consensus 271 ~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS---~ds~~~sl~~~--D-----NqI~li~~~dl~~-----k~tIsgi~~ 335 (792)
T KOG1963|consen 271 REGVLVLWQLETGKKQFLPRLGSPILHIVVS---PDSDLYSLVLE--D-----NQIHLIKASDLEI-----KSTISGIKP 335 (792)
T ss_pred cceEEEEEeecCCCcccccccCCeeEEEEEc---CCCCeEEEEec--C-----ceEEEEeccchhh-----hhhccCccC
Confidence 4788999999999888888777777777665 44555555533 1 2477765422111 111221222
Q ss_pred C-----CCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCc
Q 000428 267 P-----DFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDP 315 (1520)
Q Consensus 267 p-----~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~ 315 (1520)
| -.+-+||..+-++++-|.+-+-+|-|-|.+||+.|-+.||.-+++...
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeec
Confidence 2 235799999999999999999999999999999999999998887654
No 328
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.53 E-value=72 Score=37.66 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhc--------CCcc
Q 000428 1078 LYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRA--------DDAT 1149 (1520)
Q Consensus 1078 L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika--------~d~s 1149 (1520)
+|+-|+.+|+. |+|++|.....+.+.. |=.-.-.++=+|-||.++...|+.++|...|++. +-|+
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~fi~~------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAFIKK------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHc------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 78899999988 5599898876654322 2222446778999999999999999999999885 2223
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 000428 1150 QFLDVIRAAEDADVYHDLVRYLL 1172 (1520)
Q Consensus 1150 ~~~evi~~a~~a~~~e~Li~yL~ 1172 (1520)
....+-.+..+.++-++-...|+
T Consensus 217 allKlg~~~~~l~~~d~A~atl~ 239 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQ 239 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Confidence 33334444444444444444444
No 329
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=46.50 E-value=2e+02 Score=32.10 Aligned_cols=116 Identities=16% Similarity=0.327 Sum_probs=75.8
Q ss_pred CcccccccCC--cceeeeeccCC-CCC----CCcEEEEehhhh-ccccccccCC--ceeEEEecc-CCeEEEEec---Cc
Q 000428 67 TADSALMNPN--SRILALKAQLP-GTT----QDHLQIFNIELK-AKIKSHQMSE--QVVFWKWIS-PKMLGVVTQ---TS 132 (1520)
Q Consensus 67 ~AdsAimnP~--~~iiAlra~~~-~~~----g~~lQiFnle~k-~klks~~~~e--~vvfWkWis-~~~l~lVT~---~a 132 (1520)
.|+.|=||++ ..-++++.... ... .+...+|-++.+ .......+.. +|.=-.|=. .+.+|++++ ..
T Consensus 5 ~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 5 NVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred ccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 4666666655 56777774200 011 234889999555 5566666643 488888863 467888864 46
Q ss_pred EEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccc
Q 000428 133 VYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ 198 (1520)
Q Consensus 133 VyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er 198 (1520)
|-.|++. ..|+.-|... ++-.-.-+|+++++++.|.. ...|.|++|.++.
T Consensus 85 v~lyd~~--~~~i~~~~~~------~~n~i~wsP~G~~l~~~g~~--------n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 85 VTLYDVK--GKKIFSFGTQ------PRNTISWSPDGRFLVLAGFG--------NLNGDLEFWDVRK 134 (194)
T ss_pred cEEEcCc--ccEeEeecCC------CceEEEECCCCCEEEEEEcc--------CCCcEEEEEECCC
Confidence 8899885 3455444422 22234678999999999975 3569999999984
No 330
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=46.40 E-value=2.6e+02 Score=33.11 Aligned_cols=140 Identities=16% Similarity=0.326 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCC--ccccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEec----
Q 000428 47 QNSVVIIDMNQPMQ--PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWI---- 120 (1520)
Q Consensus 47 ~~~v~Ivdl~~~~~--~~r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWi---- 120 (1520)
|+.|-|-||.++.- .-+.|-.--+...||++-=+-. |++...+.||||.+-+-... -+||+-++-+=+
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis-----~dqsg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELIS-----GDQSGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMP 177 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecCCcceEEe-----ecCCCcEEEEEccCCccccc-cCCCCCcceeeEEEcC
Confidence 34999999998643 2334545677889999743222 23468899999877643322 458887776644
Q ss_pred cCC-eEEEEecCcEEEEeccC-----CCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEe
Q 000428 121 SPK-MLGVVTQTSVYHWSIEG-----DSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLF 194 (1520)
Q Consensus 121 s~~-~l~lVT~~aVyHW~i~~-----~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLy 194 (1520)
+-+ ..|+=+....|.|++-+ .-.|+.=|.-| +.-|..-+.++|.|-++-+|-- + ..-.|
T Consensus 178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah----~~~il~C~lSPd~k~lat~ssd----k-------tv~iw 242 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH----NGHILRCLLSPDVKYLATCSSD----K-------TVKIW 242 (311)
T ss_pred CCcEEEEecCCccEEEEEccCCCccccceEhhheecc----cceEEEEEECCCCcEEEeecCC----c-------eEEEE
Confidence 223 34455566899999943 22565444333 3568889999999999998832 2 23344
Q ss_pred eccc--ccccccchh
Q 000428 195 SVDQ--QRSQALEAH 207 (1520)
Q Consensus 195 S~er--~~sQ~iegh 207 (1520)
+.|. +.+-.++||
T Consensus 243 n~~~~~kle~~l~gh 257 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGH 257 (311)
T ss_pred ecCCceeeEEEeecC
Confidence 4443 456677888
No 331
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.13 E-value=9.8e+02 Score=33.52 Aligned_cols=295 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHhhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHH--HHHHHHhhCChhhH-H
Q 000428 1125 VAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSE--LIYAYAKIDRLGDI-E 1201 (1520)
Q Consensus 1125 lgka~l~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~--lv~~yAk~~~l~el-e 1201 (1520)
+-....+.|..+.||+-=.|=.| |.-++..|+..++-+.|-+|.. +-.+-| ..-+ +..++-+.|+..++ .
T Consensus 778 wlq~L~~vg~~e~Ai~iAEKY~D---fqsLV~lcdqld~kdrLq~y~~---~~~e~~-~eFs~~lf~y~ve~~k~~eLl~ 850 (1128)
T KOG4121|consen 778 WLQVLCKVGQYEQAIQIAEKYKD---FQSLVQLCDQLDQKDRLQDYET---FFNEYP-KEFSFFLFEYLVEHGKLGELLF 850 (1128)
T ss_pred HHHHHHhcchHHHHHHHHHHhhh---HHHHHHHHHhhCchhHHHHHHH---HHHhhh-HHHHHHHHHHHHhhchHHHHHh
Q ss_pred HHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHH-hcCHHHHHHHHHHhCChhhHHHHHHHHhcchhh
Q 000428 1202 EFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVK-LKQFQGAVDAARKANSAKTWKEVCFACVDAEEF 1280 (1520)
Q Consensus 1202 ~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~-L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~ 1280 (1520)
.| -+.....+.+|+. .+|.+|+....- +|+|.+|-+.-..--.+++=+-...... .
T Consensus 851 ~f------------------~~~~s~L~qFf~~-~d~~~lsWi~ei~nGdy~rAs~~L~~la~~e~k~vakK~s~----L 907 (1128)
T KOG4121|consen 851 RF------------------PQQHSVLIQFFQE-RDYGHLSWIQEILNGDYERASNTLLNLAVDEEKKVAKKESH----L 907 (1128)
T ss_pred cc------------------hhhHHHHHHHHhh-ccccccHHHHHHhcCcHHHHHHHHHHhcchHHHHHhhHHHH----h
Q ss_pred hHHHhhccc-------cccccccH---HHHHHHHHhcCCHHHHHHHHHhhcC----------ccccccchhHHHHHHHhc
Q 000428 1281 RLAQICGLN-------IIVQVDDL---EEVSEYYQNRGYFNELISLMESGLG----------LERAHMGIFTELGVLYAR 1340 (1520)
Q Consensus 1281 rLA~~~gl~-------li~~~d~l---~elv~~Ye~~G~f~eLI~Lle~gl~----------lerAh~~~fTeLailyAk 1340 (1520)
-||+-..+- ++.+-+++ ..+++.+++.|..+.++.=.-..+. .++=-.+-.+|+.-+...
T Consensus 908 sLaKL~s~a~~~ee~l~~~~Iqki~a~~~~Vd~~q~q~~k~qlv~s~~~nls~~si~~Vl~~veelIs~~v~e~~e~ve~ 987 (1128)
T KOG4121|consen 908 SLAKLASLAVEIEENLLILTIQKIQANLDLVDAEQSQGNKEQLVESICKNLSNGSIRPVLNLVEELISLYVVELNELVEE 987 (1128)
T ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHhcccHHHHHHhhccHHHHHHHHhcCcccchhhHHHHHHHHHHhHhhhhHHHHHHH
Q ss_pred cCh----hhhHHHHHH--HHHhhchHHHHHHHHhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhhhh
Q 000428 1341 YRY----EKLMEHIKL--FSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVAN 1414 (1520)
Q Consensus 1341 y~p----ekLmehlk~--y~~~iNi~K~i~~ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kvan 1414 (1520)
|.. ++.++-++. +--.+++-+....--.+-.|...|.+ ++|-+-+ |-+.+.+-|.+...
T Consensus 988 ~sf~~~r~~al~~le~~~~~~~~~l~dd~~k~l~~~v~Rr~vl~----dNW~~~l-----------d~d~~~d~i~~~q~ 1052 (1128)
T KOG4121|consen 988 YSFLDDREKALIELELLDEDLNRLLNDDVKKFLCALVWRRIVLL----DNWGDKL-----------DKDGKDDPIPKNQD 1052 (1128)
T ss_pred HhhhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhc----cchhhhh-----------cccCCCccchhhhc
Q ss_pred hHH-HHHHHHHHHhhCcchHHHHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHHHhhcChHHH
Q 000428 1415 VEL-YYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAV 1477 (1520)
Q Consensus 1415 ~el-yYkai~FyL~~~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~V 1477 (1520)
.+. .||-+.--.-..|..-..-+. .+---.-+|=+++.++++|--|.+++
T Consensus 1053 ~~s~f~k~Lq~~~~~g~d~~~~~~~-------------kf~l~~iyp~~ed~vE~~ql~~~~e~ 1103 (1128)
T KOG4121|consen 1053 FPSPFVKILQDKSLNGPDYSSETYG-------------KFILEEIYPEIEDQVETLQLGNLLEI 1103 (1128)
T ss_pred ccChHHHHHHHHhccCchhhhhhcc-------------ccchHhhCccHHHHHHHHhhccchhc
No 332
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.89 E-value=45 Score=40.28 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.2
Q ss_pred cceEEEEeccceEEEEeccchhhhhhcccCC
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYRNRISP 313 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~ 313 (1520)
-|.||+.+..|.|+-+|..||..+.+.++..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~ 95 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE 95 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC
Confidence 5789999999999999999999998766554
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=45.48 E-value=26 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhc
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRA 1145 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika 1145 (1520)
+.+|+.+|..+...++.++|+.+|-++
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467999999999999999999999765
No 334
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=45.14 E-value=6.4e+02 Score=30.54 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCc-----hHHHHHHHHHhCCChHHHHHHH
Q 000428 999 PEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADP-----SRVMDYVNRLDNFDGPAVGEVA 1073 (1520)
Q Consensus 999 ~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~-----~kl~~yI~~ldnyd~~~IA~ia 1073 (1520)
..+.+-.|+....=+-+.|+--+++-++ ++..|.- ||= -+.|+ .-|++|++++.-.|......++
T Consensus 59 ~~~~~llvRLltGi~ry~em~yifd~L~-~n~qfE~------LL~---k~~d~~~~lk~all~ylk~~~P~d~e~~~mv~ 128 (296)
T PF14649_consen 59 EGDWSLLVRLLTGIGRYREMTYIFDILI-ENDQFEL------LLR---KGIDKVNGLKMALLDYLKRCCPEDKEKFSMVA 128 (296)
T ss_pred cccHHHHHHHHHccCcHHHHHHHHHHHH-HcChHHH------HHh---ccccccchHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3477777777776565666555554332 3333433 322 11222 3468999999988888888888
Q ss_pred HHcCCHHHHHHHHHh
Q 000428 1074 VEAQLYEEAFAIFKK 1088 (1520)
Q Consensus 1074 ~e~~L~EEA~~LYkK 1088 (1520)
..-+|+.|...+..+
T Consensus 129 l~F~m~~Eia~~~e~ 143 (296)
T PF14649_consen 129 LHFNMYREIAELWEK 143 (296)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887888887777665
No 335
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=44.67 E-value=9e+02 Score=32.98 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=46.1
Q ss_pred EeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecC-ccccchh
Q 000428 289 ITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEA-TIVPFVS 352 (1520)
Q Consensus 289 iTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~-~ivpyi~ 352 (1520)
+...|.+.+|-..+-..+|..--.---.+++..+....+..+-.++|.++.++-++. +|--|..
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 347899999999888777765444444566666666778888889999999988764 3445544
No 336
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=44.54 E-value=53 Score=34.11 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=58.9
Q ss_pred HhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhc--
Q 000428 1159 EDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFIS-- 1236 (1520)
Q Consensus 1159 ~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~-- 1236 (1520)
..++.++.-+..+..+...-+-|.+...-.. .=......++.......+...++.+.+.|+|+.|.......-
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~-----~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDE-----EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTS-----TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 4456677777766666554333333221000 000111233333334456778888999999999998888654
Q ss_pred ------CHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1237 ------NWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1237 ------N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.|..|..+|...|+..+|++.+++
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 677789999999999999999888
No 337
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=44.34 E-value=1.3e+02 Score=38.77 Aligned_cols=114 Identities=18% Similarity=0.366 Sum_probs=70.3
Q ss_pred ceeeecCe--eEEEEecCCCCeEEEEEcCCCCCccccccCc-ccccccCCcceeeeec--cCCCCCCCcEEEEehhhhcc
Q 000428 30 NVTMESDK--YICVRETAPQNSVVIIDMNQPMQPLRRPITA-DSALMNPNSRILALKA--QLPGTTQDHLQIFNIELKAK 104 (1520)
Q Consensus 30 ~~t~eSdk--~icvre~~~~~~v~Ivdl~~~~~~~r~pi~A-dsAimnP~~~iiAlra--~~~~~~g~~lQiFnle~k~k 104 (1520)
.+|+.++- |..|--=.| ..|+|.|+. .+-+.--|-.. -.++.||..+||+|-| ++ .+.+-|||+.++.+
T Consensus 275 dv~W~~s~~EF~VvyGfMP-Akvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL----~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMP-AKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNL----PGDMEVWDVPNRKL 348 (566)
T ss_pred EEEECCCCCEEEEEEeccc-ceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCC----CCceEEEeccchhh
Confidence 44554443 444433322 388888875 43343333332 3578999999999997 33 45689999999999
Q ss_pred ccccccCCceeEEEeccCCeEEEEecCc--------EEEEeccCCCCccchhhc
Q 000428 105 IKSHQMSEQVVFWKWISPKMLGVVTQTS--------VYHWSIEGDSEPVKMFDR 150 (1520)
Q Consensus 105 lks~~~~e~vvfWkWis~~~l~lVT~~a--------VyHW~i~~~~~P~k~f~R 150 (1520)
|.++.- .+-++-.|--+-.-=++..|| +=.|+.+|.---.++|.+
T Consensus 349 i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s 401 (566)
T KOG2315|consen 349 IAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS 401 (566)
T ss_pred cccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH
Confidence 999877 444555665443333333333 445666665566677776
No 338
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.91 E-value=2.1e+02 Score=34.89 Aligned_cols=190 Identities=19% Similarity=0.160 Sum_probs=97.8
Q ss_pred CCCCCCCcHHHHHHHHhhc---CCC-ChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhccChhhHHHH---
Q 000428 419 VQAGQTPPLLQYFGTLLTR---GKL-NAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKI--- 491 (1520)
Q Consensus 419 ~~~Gq~~pLL~Yf~~ll~~---g~l-n~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~~D~~LA~~i--- 491 (1520)
..+....|.|..++..... |.. ...+..+++..+.++-. +|..|-..|=.|+...|+.-....
T Consensus 38 ~~~~~R~p~LA~lel~~~~~~~~~~~~~~~~~~~l~~Y~~~f~----------~K~cCf~DL~~Y~~~L~~~~~~~l~~~ 107 (365)
T PF09797_consen 38 SNPKSRGPYLARLELAKRLRERGDAPDEEDLLELLEEYFDKFG----------SKPCCFDDLKPYLESLDPEERKELLEK 107 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHhC----------CCCEeHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444566777777765543 332 45555566665544443 399999999999988887533222
Q ss_pred -HHhcCC-CHHHHHHHHHhccHHHHHHHHHHhCC-ch-----hHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCC-HHH
Q 000428 492 -YIKARA-TPKVVAAFAERREFDKILIYSKQVGY-TP-----DYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVD-YNT 562 (1520)
Q Consensus 492 -Y~r~~~-~~KvI~~~~e~g~f~~~~~Y~~~~~~-~~-----d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~d-v~~ 562 (1520)
...... ..+-+..+.+.-...++.+++..... ++ ....+++..-..-|- -..+. +|..|..+ +-.
T Consensus 108 ~~~~~~~~~~~~~~~l~~~in~~kl~r~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~-----~~~l~-te~~~~d~~~ll 181 (365)
T PF09797_consen 108 LLEKIEADSKEDIKQLIRHINALKLSRFLGLHFSLSSESLLDLAQELLKLYQESLSL-----GKDLK-TESQPADELALL 181 (365)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHHHHHhcccccCChhhHHHHHHHHHHHHHhhCcc-----ccccc-cccCchHHHHHH
Confidence 222211 11222222333333334444322111 11 111122111000000 00000 33344333 223
Q ss_pred HHHHHHh-------CCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCCCChhHHHHHHHHhC
Q 000428 563 ITDLFLQ-------RNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAG 635 (1520)
Q Consensus 563 vv~~F~~-------~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lCe~ag 635 (1520)
++.++++ ...+-+++.+||..++. +|.|. |.+|+++ +|.-.-|
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~-s~~n~--~~~LlLv---------------------------rlY~~LG 231 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKK-SPHNY--QLKLLLV---------------------------RLYSLLG 231 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHc-CCCcH--HHHHHHH---------------------------HHHHHcC
Confidence 4455553 45667888888887754 56544 4455444 3445789
Q ss_pred cHHHHHHhcCCCcchhHHhh
Q 000428 636 LYMRALQHYTELPDIKRVIV 655 (1520)
Q Consensus 636 L~e~Ale~Y~~~~dikR~~~ 655 (1520)
...+|+++|+.+ |||.+..
T Consensus 232 ~~~~A~~~~~~L-~iK~IQ~ 250 (365)
T PF09797_consen 232 AGSLALEHYESL-DIKNIQL 250 (365)
T ss_pred CHHHHHHHHHhc-ChHHHHH
Confidence 999999999988 6888864
No 339
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.82 E-value=2.8e+02 Score=31.96 Aligned_cols=65 Identities=17% Similarity=0.074 Sum_probs=52.5
Q ss_pred HHHHHHHhCChhHHHHHHHHH--HhhccHHHHHHHHHhcCC-cchHHHHHHHHHhcCChhHHHHHHHH
Q 000428 1109 AVEFAFRVEEDAVWSQVAKAQ--LREGLVSDAIESFIRADD-ATQFLDVIRAAEDADVYHDLVRYLLM 1173 (1520)
Q Consensus 1109 A~e~Aek~~~~eVw~~lgka~--l~~~~v~eAI~~Yika~d-~s~~~evi~~a~~a~~~e~Li~yL~m 1173 (1520)
+.+||....-|.=+.+.-+++ ||.+++++|++..-...- |..-..++.+....|++....+|++.
T Consensus 66 ~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 66 AESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHh
Confidence 666888888887777776665 999999999999877733 45555999999999999999999983
No 340
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=43.41 E-value=1.9e+02 Score=39.03 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhcc-----ChhhhHHHHHHHHHhhchHHHH------HH
Q 000428 1297 LEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARY-----RYEKLMEHIKLFSTRLNIPKLI------RA 1365 (1520)
Q Consensus 1297 l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky-----~pekLmehlk~y~~~iNi~K~i------~~ 1365 (1520)
+.++.+..++.|.|+++|.||+.++.-+.|=.-|=-.|+-...-. .+|++-.-.+.....++..+-. ..
T Consensus 625 ~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t 704 (835)
T KOG2168|consen 625 ILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKT 704 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 467888899999999999999999877777333333344444444 4555444444433333221111 11
Q ss_pred HHhhcchHHHHHHHHhhccHHHHHHHHHhc-----Cchhhcch---------hhHHHHHhh--hhhHHHHHHHHHHHhhC
Q 000428 1366 CDEQQHWKELTYLYIQYDEFDNAATTIMNH-----SPEAWDHM---------QFKDVAVKV--ANVELYYKAVHFYLQEH 1429 (1520)
Q Consensus 1366 ce~~~lW~E~vfLy~~~~e~d~A~~~mi~h-----~~~a~~h~---------~fk~ii~kv--an~elyYkai~FyL~~~ 1429 (1520)
|. .-+=.--.|=+.+.|+|+.|+..|..- +++.-+|- -|..++..+ +-.++.|++.....+..
T Consensus 705 ~~-lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~~~~~v~~~~~~~~~~~~e~~~~lp~~l~~tm~i~~~~~~~lk~~~ 783 (835)
T KOG2168|consen 705 LS-LLLDLVSFFDLYHNGEWEEALSILEHLDLIPLDPLSVDEIVANFRNLADEFRKVLPDVLLATMDILQIAMKRLKTTY 783 (835)
T ss_pred HH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCChhhhhHHHHHHHhcchhhhhcChhHHHHHHHHHHHHHHHHHhcc
Confidence 11 111111345566778999988766443 22222221 144444444 55678999999999999
Q ss_pred cchHHHH----HHHHhhcCCHHHHHHHHH
Q 000428 1430 PDLINDL----LNVLALRVDHTRVVDIMR 1454 (1520)
Q Consensus 1430 P~~l~dl----L~~l~~rlD~~rvV~~~~ 1454 (1520)
|+..... ..++-..-|..|-+.++.
T Consensus 784 ~~~s~~~~~~~~~~l~~lr~~a~~i~~~a 812 (835)
T KOG2168|consen 784 PSSSKRPQRVSETKLDRLRDQARAIVMMA 812 (835)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9775422 333333344444444443
No 341
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=43.38 E-value=43 Score=33.06 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHHHhhcChHHHHHHH
Q 000428 1435 DLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEAL 1481 (1520)
Q Consensus 1435 dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal 1481 (1520)
++|..-..++|+..|+.+++..-.+..+++||...-......+++.-
T Consensus 2 ~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~ 48 (109)
T PF10367_consen 2 ELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQ 48 (109)
T ss_pred hhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999987766555555543
No 342
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=43.32 E-value=70 Score=37.95 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=20.2
Q ss_pred hHHHHHhhhhccccHHHHHHHHHhhcC
Q 000428 1211 NLQNVGDRLYDDTLYEAAKIIYAFISN 1237 (1520)
Q Consensus 1211 ~v~~vgd~~~eeg~YeaAk~~y~~~~N 1237 (1520)
.+..+|+++.+.|+.++|-.+|--.++
T Consensus 118 ~l~~LGd~L~~~g~~~aA~iCYllag~ 144 (284)
T PF12931_consen 118 ALCALGDRLWQRGRVEAAHICYLLAGN 144 (284)
T ss_dssp TT--HHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhCCCcchhHHHHhHcCC
Confidence 346699999999999999999986653
No 343
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.52 E-value=65 Score=41.83 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=50.7
Q ss_pred HHHHcCCHHHHHHHHHhcCC-cHHHHHHHHHhhhh-----HHHHHHHHHHhCChh----HHHHHHHHHHhhccHHHHHHH
Q 000428 1072 VAVEAQLYEEAFAIFKKFNL-NVQAVNVLLDNIRS-----IERAVEFAFRVEEDA----VWSQVAKAQLREGLVSDAIES 1141 (1520)
Q Consensus 1072 ia~e~~L~EEA~~LYkK~~~-~~~Ai~vLi~~~~~-----~~~A~e~Aek~~~~e----Vw~~lgka~l~~~~v~eAI~~ 1141 (1520)
.+..+++|+.|+......+. =-.+++.++.+.+. .+++++++.+.+.++ |+..+|+-.++.|++-+|+.+
T Consensus 368 L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~ 447 (566)
T PF07575_consen 368 LMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSW 447 (566)
T ss_dssp HHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33479999999999987553 35677777775533 567888888766655 456667777889999999999
Q ss_pred HHhcCCcchHHHHHHHH
Q 000428 1142 FIRADDATQFLDVIRAA 1158 (1520)
Q Consensus 1142 Yika~d~s~~~evi~~a 1158 (1520)
|++|+|......+....
T Consensus 448 ~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HH---------------
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999987776555433
No 344
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.23 E-value=82 Score=38.77 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=55.0
Q ss_pred CceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEecc
Q 000428 222 PSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLE 301 (1520)
Q Consensus 222 ~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~ 301 (1520)
..+||..++|.. +++.|++..+. +....++.. .+.|..+..|+--..+|+.++.|.|.++|+.
T Consensus 4 ~~~l~~V~~~~~------~~v~viD~~t~-------~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 4 TGNLFYVVERGS------GSVAVIDGATN-------KVVARIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp GGGEEEEEEGGG------TEEEEEETTT--------SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETT
T ss_pred CccEEEEEecCC------CEEEEEECCCC-------eEEEEEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECC
Confidence 567898998843 56999996542 111122211 2345556666655579999999999999999
Q ss_pred chhhhhhcccCCCceEEeec
Q 000428 302 TAAAVYRNRISPDPIFLTSE 321 (1520)
Q Consensus 302 tg~~i~~~rIs~~~iF~~~~ 321 (1520)
|+..+-+-++..++.=++-+
T Consensus 67 ~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 67 TGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp SSSEEEEEE-SSEEEEEEE-
T ss_pred cccEEEEEecCCCcceEEEc
Confidence 99999888887777665543
No 345
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=42.02 E-value=5.9e+02 Score=30.97 Aligned_cols=161 Identities=12% Similarity=0.159 Sum_probs=91.2
Q ss_pred eEEEEEcCC-CCCccccccCccccccc----CCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCC
Q 000428 49 SVVIIDMNQ-PMQPLRRPITADSALMN----PNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPK 123 (1520)
Q Consensus 49 ~v~Ivdl~~-~~~~~r~pi~AdsAimn----P~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~ 123 (1520)
+|+.=.... -.+. =.+-.--+|||. +.++.|--=++ -+++..||++|-++.+.|....++|==-=.+..
T Consensus 70 ~I~LWnv~gdceN~-~~lkgHsgAVM~l~~~~d~s~i~S~gt-----Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 70 AIVLWNVYGDCENF-WVLKGHSGAVMELHGMRDGSHILSCGT-----DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRR 143 (338)
T ss_pred eEEEEeccccccce-eeeccccceeEeeeeccCCCEEEEecC-----CceEEEEecccceeeehhccccceeeecCcccc
Confidence 666655332 1111 111255678874 34444444333 689999999999999999886664422224444
Q ss_pred eEEEEec----CcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccc
Q 000428 124 MLGVVTQ----TSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ 199 (1520)
Q Consensus 124 ~l~lVT~----~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~ 199 (1520)
.+-+|+. ..+=.|++- .-.+.|-|+- -+|+....-..+..= ..-|.|.+.+|.|+.-|+
T Consensus 144 g~~lv~SgsdD~t~kl~D~R-~k~~~~t~~~-----kyqltAv~f~d~s~q-----------v~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIR-KKEAIKTFEN-----KYQLTAVGFKDTSDQ-----------VISGGIDNDIKVWDLRKN 206 (338)
T ss_pred CCeEEEecCCCceEEEEeec-ccchhhcccc-----ceeEEEEEecccccc-----------eeeccccCceeeeccccC
Confidence 4455553 234455552 1234443322 255555332222110 012478999999999776
Q ss_pred -cccccchhhccceeeec-------CCCCCCceEEEEEEec
Q 000428 200 -RSQALEAHAASFAQFKV-------PGNENPSVLISFATKS 232 (1520)
Q Consensus 200 -~sQ~ieghaa~F~~~~~-------~g~~~~~~l~~fa~r~ 232 (1520)
..-.+.||+-+-..+-+ .+|.-..++-.+-.|.
T Consensus 207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred cceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 88899999987765543 2344455566666664
No 346
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.91 E-value=2.3e+02 Score=32.81 Aligned_cols=50 Identities=10% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhH
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS------NWAKLAVTLVKLKQFQGAVDAARKANSAKTW 1267 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~w 1267 (1520)
-.+|+.++..|+|+.|..+|+.+. .|..|..-. .....++|++.++.+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~-----l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEV-----LWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH-----HHHHHHHHHHhCCHHHH
Confidence 579999999999999999999874 333332111 23455666665555433
No 347
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.45 E-value=3.4e+02 Score=36.01 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhhcCCCccccchhhhHHHHHHHhhCchHHHHHHHHHhCCC--hHHHHHHHHHcCCHHH
Q 000428 1004 AAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFD--GPAVGEVAVEAQLYEE 1081 (1520)
Q Consensus 1004 ~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd--~~~IA~ia~e~~L~EE 1081 (1520)
..|-.||..|--.|-+.||-.+= . -++++=+-.+.++.|+--|+....+|= +.++| +.+-
T Consensus 183 ~iV~f~mkHNAE~eAiDlL~Eve--~---------id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~-------ll~~ 244 (878)
T KOG2005|consen 183 EIVPFHMKHNAEFEAIDLLMEVE--G---------IDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVA-------LLRT 244 (878)
T ss_pred HHHHHHHhccchhHHHHHHHHhh--h---------HhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhH-------HHHH
Confidence 44557777766666677664421 0 014444446668888888888888774 23333 4468
Q ss_pred HHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHH
Q 000428 1082 AFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQ 1124 (1520)
Q Consensus 1082 A~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~ 1124 (1520)
|..||.|+++|.+|+.+.+.-. +.+.+.++-..+.+|-+--|
T Consensus 245 a~~IYlKf~~~~~al~~ai~l~-~~~~v~~vf~s~~D~~~kKQ 286 (878)
T KOG2005|consen 245 ALKIYLKFNEYPRALVGAIRLD-DMKEVKEVFTSCTDPLLKKQ 286 (878)
T ss_pred HHHHHHHHHHhHHHHHHHHhcC-cHHHHHHHHHhccCHHHHHH
Confidence 9999999999999999988742 56677888887777765444
No 348
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=40.43 E-value=2e+02 Score=37.27 Aligned_cols=50 Identities=14% Similarity=-0.080 Sum_probs=39.7
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc-------CHHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS-------NWAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~-------N~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
+..|-.+.-.|++++|...|.+.- .|.-+|.++...|++++|++.+++|-
T Consensus 424 ~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 424 EILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445666666788888888887543 67778999999999999999999975
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=40.36 E-value=23 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1297 LEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1297 l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
+..|...|...|+++++..++++++.+-++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 567889999999999999999999655544
No 350
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=40.04 E-value=77 Score=35.04 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=47.8
Q ss_pred HhCChhHHHHHHHHHHhhccHHHHHHHHHhcCC----cchH----HHHHHHHHhcCChhHHHHHHHHHhhh
Q 000428 1115 RVEEDAVWSQVAKAQLREGLVSDAIESFIRADD----ATQF----LDVIRAAEDADVYHDLVRYLLMVRQK 1177 (1520)
Q Consensus 1115 k~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d----~s~~----~evi~~a~~a~~~e~Li~yL~m~r~~ 1177 (1520)
+..-...|-.+|..|.+.|+.++|+.+|.++-+ +.+. ..+|+.+...+++..+..|+..|+..
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344456777999999999999999999999833 2222 26778888888888888888876654
No 351
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=39.95 E-value=27 Score=38.72 Aligned_cols=56 Identities=25% Similarity=0.526 Sum_probs=39.5
Q ss_pred ccceEEEEeccceEEEEeccchhhhhhcccC----------CCceEEeeccCCCCcEEEEc-CCCcEEEE
Q 000428 282 KYGLIYVITKLGLLFVYDLETAAAVYRNRIS----------PDPIFLTSEASSLGGFYAIN-RRGQVLLA 340 (1520)
Q Consensus 282 k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs----------~~~iF~~~~~~~~~Gi~~Vn-~~GqVl~v 340 (1520)
.-|.+|+.|..|.|+.+|..||+.+.+.... ++.||+++. .+.+++++ +.|.++--
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTS---DGSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEET---TSEEEEEETTTSCEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccc---eeeeEecccCCcceeee
Confidence 5577999999999999999999998776652 233344442 23567776 67766655
No 352
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=39.59 E-value=8.3e+02 Score=33.62 Aligned_cols=137 Identities=14% Similarity=0.239 Sum_probs=82.4
Q ss_pred ecCcEEEEeccCC-CCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccccccc-ccch
Q 000428 129 TQTSVYHWSIEGD-SEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQ-ALEA 206 (1520)
Q Consensus 129 T~~aVyHW~i~~~-~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ-~ieg 206 (1520)
++..|-||....+ ..|.- -+|+ +--|..|.++.. ..++|- +.+.++.|.+..+..+ +|--
T Consensus 33 sdg~ir~~~~~sd~e~P~t-i~~~----g~~v~~ia~~s~---~f~~~s----------~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 33 SDGDIRKWKTNSDEEEPET-IDIS----GELVSSIACYSN---HFLTGS----------EQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred CCCceEEeecCCcccCCch-hhcc----CceeEEEeeccc---ceEEee----------ccceEEEeeCCCCCccceeee
Confidence 3557889987655 45552 2343 345667777666 666664 4789999988887765 3322
Q ss_pred hhccceeeecCCCCCCceEEEEEEec---CCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcce-eEEeccc
Q 000428 207 HAASFAQFKVPGNENPSVLISFATKS---FNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPV-AMQISHK 282 (1520)
Q Consensus 207 haa~F~~~~~~g~~~~~~l~~fa~r~---~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv-~mqvs~k 282 (1520)
+ +-|...+||-.-+ ..|+-- --+.+++.... +..+.-+ + -|=|| ++..+++
T Consensus 95 f------------tlp~r~~~v~g~g~~iaagsdD-~~vK~~~~~D~--s~~~~lr------g----h~apVl~l~~~p~ 149 (933)
T KOG1274|consen 95 F------------TLPIRDLAVSGSGKMIAAGSDD-TAVKLLNLDDS--SQEKVLR------G----HDAPVLQLSYDPK 149 (933)
T ss_pred e------------eccceEEEEecCCcEEEeecCc-eeEEEEecccc--chheeec------c----cCCceeeeeEcCC
Confidence 2 2344455554332 112100 12555565332 2111111 2 12233 4566788
Q ss_pred cceEEEEeccceEEEEeccchhhhhh
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYR 308 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~ 308 (1520)
-.++-+++..|-|.+||+++|++.++
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhh
Confidence 89999999999999999999999876
No 353
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.28 E-value=68 Score=33.56 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=68.5
Q ss_pred HHHHHHHHhcC-CCCCCC-----HHHHHHHHHhCCcHHHHHHHHHHhhcC--CCC----CCchhhhHHHHhhhccCc-hh
Q 000428 543 VNFALMMSQME-GGCPVD-----YNTITDLFLQRNLIREATAFLLDVLKP--NLP----EHGFLQTKVLEINLVTFP-NV 609 (1520)
Q Consensus 543 ~~la~~l~~~e-~~~~~d-----v~~vv~~F~~~~l~~e~t~~Ll~~lk~--n~~----e~~~LQt~Lle~nl~~~p-~V 609 (1520)
.+|-..+..-+ +.+|++ |.-+-+.|-+.+....+..+|++++.. +.+ +.+-|+-=+.-.....+| .|
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~i 85 (126)
T PF08311_consen 6 QEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREI 85 (126)
T ss_dssp HHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHH
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHH
Confidence 44545554443 334444 333444444557778888889888842 222 344566556666666677 89
Q ss_pred HHHHhhCCCCCCCChh--HHHHHHHHhCcHHHHHHhcC
Q 000428 610 ADAILANGMFSHYDRP--RIAQLCEKAGLYMRALQHYT 645 (1520)
Q Consensus 610 ad~Il~~~~l~~yD~~--~IA~lCe~agL~e~Ale~Y~ 645 (1520)
-.++.++++.+.+--= .-|.++|..|.+++|-++|.
T Consensus 86 f~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 86 FKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988764 45899999999999999885
No 354
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.93 E-value=1.3e+02 Score=35.73 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=39.2
Q ss_pred HHHHhhhhccccHHHHHHHHHhhc-----------CHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1213 QNVGDRLYDDTLYEAAKIIYAFIS-----------NWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1213 ~~vgd~~~eeg~YeaAk~~y~~~~-----------N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.=+|+.++..|+|+.|-..|-.+- ...|||.|+..+|+-+.|....++
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 338999999999999998887654 678999999999999998755444
No 355
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.86 E-value=2.8e+02 Score=36.14 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=46.4
Q ss_pred cchhhHHHHHhh--hhhHHHHHHHHHHHhh--CcchHHHHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHH
Q 000428 1401 DHMQFKDVAVKV--ANVELYYKAVHFYLQE--HPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVA 1468 (1520)
Q Consensus 1401 ~h~~fk~ii~kv--an~elyYkai~FyL~~--~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~ 1468 (1520)
|-..=+.++.|+ .|.+.+|-++.|+++. .|+++.-|...+..-.--.+|++++.-.-.-...+.||-.
T Consensus 223 Da~~a~~L~~kL~~end~~l~aqvAFdledsasqe~leil~t~~vA~~~d~av~~ILSGe~t~ky~~~FLl~ 294 (926)
T COG5116 223 DAEKAKALIEKLVKENDLLLYAQVAFDLEDSASQEILEILVTELVAQGYDQAVMSILSGEFTKKYLGAFLLE 294 (926)
T ss_pred cHHHHHHHHHHHHhhhhhhhhhhheehhccccCHHHHHhccchhhhccccHHHHHHhcCcchhHHHHHHHHh
Confidence 344456666666 7888899999999954 4466655566666666677799988765544445666643
No 356
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.62 E-value=1.3e+03 Score=32.29 Aligned_cols=230 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred cCCcceeeeeccCCCCCCCcEEEEehhh-----hccccccccCCce-eEEEeccCCeEEEEec-CcE----EEEeccCC-
Q 000428 74 NPNSRILALKAQLPGTTQDHLQIFNIEL-----KAKIKSHQMSEQV-VFWKWISPKMLGVVTQ-TSV----YHWSIEGD- 141 (1520)
Q Consensus 74 nP~~~iiAlra~~~~~~g~~lQiFnle~-----k~klks~~~~e~v-vfWkWis~~~l~lVT~-~aV----yHW~i~~~- 141 (1520)
|+.+.|+|+. . ...||+|-... |+-+.-....... +-|-.-++.+|-++|. ..+ |.|.+...
T Consensus 313 n~ds~iLAv~-~-----~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 313 NSDSEILAVW-L-----EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred CCCCCEEEEE-e-----cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Q ss_pred --------------------------CCccchhhcccCC-CCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEe
Q 000428 142 --------------------------SEPVKMFDRTANL-TNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLF 194 (1520)
Q Consensus 142 --------------------------~~P~k~f~R~~~L-~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLy 194 (1520)
.-|-=|..+.-.+ ++..-+.+..+.+. +.-+. -.|.+.+|
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~----~avl~---------~d~~l~~~ 453 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR----FAVLT---------SDGSLSIY 453 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe----EEEEE---------CCCCEEEE
Q ss_pred eccccccc-------------------ccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCC
Q 000428 195 SVDQQRSQ-------------------ALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPS 255 (1520)
Q Consensus 195 S~er~~sQ-------------------~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~ 255 (1520)
..+-+-.. ..+.-..++..+-..+.. .+++.+....+. .++.+.+++....
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~i~~~~~~~~~~--- 523 (928)
T PF04762_consen 454 EWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD---TLLVLSDSDSNQ----SKIVLVDIDDSEN--- 523 (928)
T ss_pred EecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC---EEEEEEecCccc----ceEEEEEeccCCC---
Q ss_pred cccccccccCCCCCCCCcceeEEeccccce-EEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCC---cEEEE
Q 000428 256 FTKKQADLFFPPDFADDFPVAMQISHKYGL-IYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLG---GFYAI 331 (1520)
Q Consensus 256 f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~-iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~---Gi~~V 331 (1520)
....-.....+-|+.+..+..++- +|+-|..|-++.++.......-..=-..-+-|..+..+... -++|.
T Consensus 524 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GL 597 (928)
T PF04762_consen 524 ------SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGL 597 (928)
T ss_pred ------ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEE
Q ss_pred cCCCcEE
Q 000428 332 NRRGQVL 338 (1520)
Q Consensus 332 n~~GqVl 338 (1520)
+++|+.+
T Consensus 598 s~~~~Ly 604 (928)
T PF04762_consen 598 SSNGRLY 604 (928)
T ss_pred CCCCEEE
No 357
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=38.26 E-value=41 Score=29.56 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEeccccceEEEEeccceEEEEeccchhhhh
Q 000428 276 AMQISHKYGLIYVITKLGLLFVYDLETAAAVY 307 (1520)
Q Consensus 276 ~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~ 307 (1520)
.|..|++-++|-+.|..|-|.+|.+ +|..|+
T Consensus 16 ~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 16 CMSWCPTMDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred EEEECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence 6799999999999999999999999 887765
No 358
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.96 E-value=1.2e+02 Score=39.31 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.6
Q ss_pred ceeEEeccccceEEEEeccceEEEEeccchh
Q 000428 274 PVAMQISHKYGLIYVITKLGLLFVYDLETAA 304 (1520)
Q Consensus 274 Pv~mqvs~k~g~iyviTK~G~l~lyDl~tg~ 304 (1520)
|..+-+-+--.++.|.+..|=+-+||+..+.
T Consensus 302 P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 302 PTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 5566676677788888888999999987654
No 359
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=37.37 E-value=55 Score=40.06 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=43.1
Q ss_pred cceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecCcc
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATI 347 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~~i 347 (1520)
-|.+|+.+..|.++-+|+.||..+.+..++.-.-++. ..+-+++++.+|+|+.+....-++
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~----~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV----DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE----ECCEEEEEcCCCeEEEEECCCCcE
Confidence 4789999999999999999999998877654211111 123366667777777777655443
No 360
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=36.86 E-value=3.1e+02 Score=36.84 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=41.9
Q ss_pred hHHHHhhCCCCCCCChhHHHHHHHHh---------------CcHHHHHHhcCCCcchhHHhhccccCChhhHHHHhhcCC
Q 000428 609 VADAILANGMFSHYDRPRIAQLCEKA---------------GLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLS 673 (1520)
Q Consensus 609 Vad~Il~~~~l~~yD~~~IA~lCe~a---------------gL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~l~ 673 (1520)
+...+ ++++.||..++.++|.+- ++||-|++ .|-+.+|
T Consensus 501 ~~~il---~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~---------------------llk~~~d--- 553 (727)
T PF12726_consen 501 ISQIL---ERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQD---------------------LLKQAFD--- 553 (727)
T ss_pred HHHHH---HHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHH---------------------HHHHHhc---
Confidence 44444 777888888888777642 12333322 4555555
Q ss_pred hHhHHHHHHHHHHhhccchHHHHHHHH
Q 000428 674 REWALECMKDLLLVNLRGNLQIIVQTA 700 (1520)
Q Consensus 674 ~~~~~~~l~~~l~~n~~~nlq~vv~~a 700 (1520)
++--.||+++|++.|..+.+.-+...-
T Consensus 554 ~~~R~e~i~~ll~~~~~~tL~ai~~~l 580 (727)
T PF12726_consen 554 VDGRLEAIQALLQSNFSPTLSAINWSL 580 (727)
T ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455689999999999888877664444
No 361
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=36.31 E-value=8.2e+02 Score=29.56 Aligned_cols=214 Identities=14% Similarity=0.209 Sum_probs=121.4
Q ss_pred CCcEEEEehhhhccccccccCCceeEEEeccCCeEEEEecC---cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCC
Q 000428 91 QDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQT---SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPT 167 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~---aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~ 167 (1520)
-++|.+||+++-++-..|.-.-..|.===+|++.=-|||++ ..--|++-| +| -|....+
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---------------~c---k~t~~~~ 145 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---------------VC---KYTIHED 145 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc---------------cE---EEEEecC
Confidence 45677777777765555555555554444444444444432 233333311 11 1222222
Q ss_pred --CCeEEEEeccCCCCCC---CccccceEEEeecccc-cccccchhhccceeeecCCCCCCceEEEEEEecCCCCcccce
Q 000428 168 --EKWLVLIGIAPGSAER---PQLVKGNMQLFSVDQQ-RSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSK 241 (1520)
Q Consensus 168 --~kW~~l~Gi~~~~~~~---~~~i~G~mQLyS~er~-~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~k 241 (1520)
..|.-=+-.+|+.+.. ...-.+.+-+|..+.- +-+.+=||.+.-..+.+. +...|++-+.| + |+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS---pDGslcasGgk---d----g~ 215 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS---PDGSLCASGGK---D----GE 215 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC---CCCCEEecCCC---C----ce
Confidence 5777777777553221 1245677788876653 556666777665555332 22334444322 3 68
Q ss_pred EEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeec
Q 000428 242 LHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSE 321 (1520)
Q Consensus 242 L~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~ 321 (1520)
..+-++..... -+.+ + ++|---|+-+|+..=.+-..|--| |.+||++|+.+|+.-+.-.-.-
T Consensus 216 ~~LwdL~~~k~--lysl-------~---a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~----- 277 (315)
T KOG0279|consen 216 AMLWDLNEGKN--LYSL-------E---AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGP----- 277 (315)
T ss_pred EEEEEccCCce--eEec-------c---CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcccccccc-----
Confidence 88888855321 1111 1 234444677777777888888888 9999999999998876432221
Q ss_pred cCCCCcEEEEc----CCCcEEEEEeecCccccc
Q 000428 322 ASSLGGFYAIN----RRGQVLLATVNEATIVPF 350 (1520)
Q Consensus 322 ~~~~~Gi~~Vn----~~GqVl~v~i~~~~ivpy 350 (1520)
.++.++.+|+. .+||=|--.--.+.|.++
T Consensus 278 s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 278 SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 45667777775 667777665555555443
No 362
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=35.42 E-value=1.9e+02 Score=34.62 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=77.7
Q ss_pred CCCCCCCCcHHHHHHHHhhcCCCChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhccChh--hHHHHHHhc
Q 000428 418 PVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDND--LALKIYIKA 495 (1520)
Q Consensus 418 ~~~~Gq~~pLL~Yf~~ll~~g~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~~D~~--LA~~iY~r~ 495 (1520)
.+.|--|+-|+.+|-.+..+..|-+ ||+++.-+...|+.+.=+-+|..--..--+-.+++|.+ ||++....+
T Consensus 150 ~~ep~~Pp~La~~~H~~~t~~nlHP------VkIi~~v~~~pll~~~~~l~k~v~dlvcEK~m~~~d~NEila~K~hy~~ 223 (396)
T KOG1710|consen 150 EGEPEYPPELAVFIHSLCTSHNLHP------VKIIFRVSKYPLLLKYKKLIKYVIDLVCEKQMRCKDSNEILALKLHYIL 223 (396)
T ss_pred CCCCCCCHHHHHHHHHHHhcccccc------eEEEEEcccCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455557789999999998765544 45555555555565555555542222222222345665 888887654
Q ss_pred CCCHHHHHHHHH--------hccHHHHHHHHHH-----hCC-chhHH-HHHHHHhhcCchhHHHHHHHHHhc
Q 000428 496 RATPKVVAAFAE--------RREFDKILIYSKQ-----VGY-TPDYL-FLLQTILRTDPQGAVNFALMMSQM 552 (1520)
Q Consensus 496 ~~~~KvI~~~~e--------~g~f~~~~~Y~~~-----~~~-~~d~~-~lL~~~~~~np~~~~~la~~l~~~ 552 (1520)
..|.|..+ .|+ .++..|++. .++ +++|. .+|++++|+=|.+-..+-++|+..
T Consensus 224 ----~~irc~~qfk~~nkeKsgE-nk~~~~~K~ilk~~~~dg~~~y~e~~lRe~vr~FPy~e~tl~~ql~~~ 290 (396)
T KOG1710|consen 224 ----FSIRCTSQFKESNKEKSGE-NKSLQYAKLILKWQEGDGTRRYLEVMLREAVRSFPYKESTLHDQLQKA 290 (396)
T ss_pred ----HHHhHHHHHHHhhcccCch-hHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 55666554 344 456777764 234 67776 478999999999877777777765
No 363
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=35.25 E-value=3.5e+02 Score=36.15 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=48.1
Q ss_pred CceEEEEEEecCCCCcccceEEEEecCCCC--CCCCccc--ccccccCCCCCCCCcceeEEeccccceEEEEeccceEEE
Q 000428 222 PSVLISFATKSFNAGQVTSKLHVIELGAQP--GKPSFTK--KQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFV 297 (1520)
Q Consensus 222 ~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~--~~~~f~k--k~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~l 297 (1520)
...++|++...... .++..++.+... .+..-.. ...++- .+|=.|++.++.+...||++.+.|.|-+
T Consensus 85 ~~~~~~~glt~rKk----~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-----l~~kvv~Ik~~~~~~~I~vvl~nG~i~~ 155 (670)
T PF10395_consen 85 GKKLYCVGLTERKK----FKLLLIERKVGSTEDGTVNSETTNEFELK-----LDDKVVGIKFSSDGKIIYVVLENGSIQI 155 (670)
T ss_pred CcEEEEEEEeeCCe----eEEEEEEccCccccccccCccccceEEEE-----cccceEEEEEecCCCEEEEEEcCCcEEE
Confidence 56678887665443 578888886321 1111111 222222 4677899999999999999999999999
Q ss_pred Eec
Q 000428 298 YDL 300 (1520)
Q Consensus 298 yDl 300 (1520)
||.
T Consensus 156 ~d~ 158 (670)
T PF10395_consen 156 YDF 158 (670)
T ss_pred Eec
Confidence 999
No 364
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.16 E-value=77 Score=38.60 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=41.8
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhc------------CHHHHHHHHHHhcCHHHHHHHHHHhC
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFIS------------NWAKLAVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~------------N~~kLA~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
...=|+.||.+..|.-|..+|+.-- =|..=|-|..++|.|..|+.=+.+|.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999532 45555888899999999998777754
No 365
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=35.16 E-value=1e+02 Score=31.66 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHHhhhc---cchhHHHHHhhhccc-CCCChhHHH
Q 000428 712 CIKLFEQFK---SYEGLYFFLGSYLSS-SEDPDIHFK 744 (1520)
Q Consensus 712 li~~fe~~~---~~e~L~~yL~~~~~~-~~dp~V~~k 744 (1520)
-+++..+|| +.||+..|.+.++.. .+||+|--.
T Consensus 53 q~~VIk~yGF~~~~eG~~~f~~~i~~~e~~D~eva~l 89 (105)
T PF14974_consen 53 QMEVIKKYGFPESREGVMQFAQLIRELEKDDPEVARL 89 (105)
T ss_pred HHHHHHHcCCCCCcchHHHHHHHHHHHHccCHHHHHH
Confidence 355666666 799999999999999 678887543
No 366
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=35.03 E-value=3.9e+02 Score=33.24 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=75.8
Q ss_pred HHHHHHhhCChhhHHHHhc--------CcCcc----hHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHH
Q 000428 1187 LIYAYAKIDRLGDIEEFIL--------MPNVA----NLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGA 1254 (1520)
Q Consensus 1187 lv~~yAk~~~l~ele~fl~--------~~N~a----~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~A 1254 (1520)
+..++++.|++.+.++|-. ..+-+ -+-..||.+-+.|+.|.|.-=|++..-- .+..=-++|+.+.=
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~--m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT--MASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH--HhhhhhhHHHHHHH
Confidence 4678999999999998832 22222 2355899999999999998888765411 12222223333222
Q ss_pred HHHHHHhCChhhHH--------HHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1255 VDAARKANSAKTWK--------EVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1255 ve~AkKa~~~k~wk--------~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
--+||-+...+... +.+.-|+ ++|..-|-+.++-+=++ -+...|-.+|.-++.-.-+.++-....+
T Consensus 290 ~g~Akc~~~~r~~~k~~~Crale~n~r~l-----evA~~IG~K~~vlK~hc-rla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 290 DGAAKCLETLRLQNKICNCRALEFNTRLL-----EVASSIGAKLSVLKLHC-RLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHH-----HHHHHhhhhHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 22222211111111 2233344 45554443333322221 2345566677666665555544333333
Q ss_pred ccchhHHHHHHHhccChhhh
Q 000428 1327 HMGIFTELGVLYARYRYEKL 1346 (1520)
Q Consensus 1327 h~~~fTeLailyAky~pekL 1346 (1520)
++.|--++-=--.-+||+|
T Consensus 364 -~~L~Cg~CGe~~Glk~e~L 382 (518)
T KOG1941|consen 364 -TELYCGLCGESIGLKNERL 382 (518)
T ss_pred -HhhhhhhhhhhhcCCcccc
Confidence 4544433322222356664
No 367
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=34.88 E-value=51 Score=26.30 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
+..||.+|...|+|++|.++.+++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 456889999999999999988884
No 368
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=34.86 E-value=49 Score=25.15 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHh
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIR 1144 (1520)
Q Consensus 1120 eVw~~lgka~l~~~~v~eAI~~Yik 1144 (1520)
+.++++|.++...|+.++|++.|-+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4578999999999999999999866
No 369
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=34.51 E-value=1e+03 Score=34.57 Aligned_cols=243 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCHHHHHHH-hcCCCCCCCCCcHHHHHHHHhhcCCCC-----hhhhHHHHHHHHhhcchhhHHHHH-hhcccccchhhhh
Q 000428 406 RTPDTVAKF-QSVPVQAGQTPPLLQYFGTLLTRGKLN-----AFESLELSRLVVNQNKKNLLENWL-AEDKLECSEELGD 478 (1520)
Q Consensus 406 Rt~~Ti~rf-k~~~~~~Gq~~pLL~Yf~~ll~~g~ln-----~~eslEL~r~vl~qnr~~LlekWL-~enkL~~Se~lGD 478 (1520)
|-|+|-+-| +.+..-|+..-|-+.|-.--|+.+-+. +++.+--+-+=..+-++.+-..+| -|+-+-.-|.|-+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Q ss_pred hhhccChh-hHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHH-----hCCchhHHHHHHHHhhcCc-hhHHHHHHHHHh
Q 000428 479 LVKTVDND-LALKIYIKARATPKVVAAFAERREFDKILIYSKQ-----VGYTPDYLFLLQTILRTDP-QGAVNFALMMSQ 551 (1520)
Q Consensus 479 ~~~~~D~~-LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~-----~~~~~d~~~lL~~~~~~np-~~~~~la~~l~~ 551 (1520)
..+....+ =|++| |.++.-.+.+.+.|+.+.+++++ ++-..-|....+..++.|- +.|+++..-=.+
T Consensus 1519 VFeRAcqycd~~~V------~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTV------HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHhcchHHH------HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Q ss_pred cCCC--CCCCHHHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccC-chhHHHHhhCCCCCCCChhHHH
Q 000428 552 MEGG--CPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTF-PNVADAILANGMFSHYDRPRIA 628 (1520)
Q Consensus 552 ~e~~--~~~dv~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~-p~Vad~Il~~~~l~~yD~~~IA 628 (1520)
--+. ...=++..+++=+..|.+.-+-++++..|... |--..|=+-.|.+-+++. +..+.-+
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~l--------------- 1656 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDL--------------- 1656 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHH---------------
Q ss_pred HHHHHhCcHHHHHHhcCCCcchhHHhhccccCChhhHHHHhhcCChHhHHHHHHHHH----HhhccchHHHHHHHHHHHH
Q 000428 629 QLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLL----LVNLRGNLQIIVQTAKEYC 704 (1520)
Q Consensus 629 ~lCe~agL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~l----~~n~~~nlq~vv~~a~~y~ 704 (1520)
||||.+ +. +++.+....++-.| +..+-.|.+.|=.+|.+|.
T Consensus 1657 --------feRvi~----l~-----------------------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1657 --------FERVIE----LK-----------------------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred --------HHHHHh----cC-----------------------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q ss_pred h
Q 000428 705 E 705 (1520)
Q Consensus 705 ~ 705 (1520)
+
T Consensus 1702 ~ 1702 (1710)
T KOG1070|consen 1702 E 1702 (1710)
T ss_pred H
No 370
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=33.97 E-value=4.4e+02 Score=32.48 Aligned_cols=180 Identities=13% Similarity=0.212 Sum_probs=106.6
Q ss_pred CCcEEEEehhhhccccccccCCc-eeEEEeccC---CeEEE-EecCcEEEEeccC-CCCccchhhccc--CC------CC
Q 000428 91 QDHLQIFNIELKAKIKSHQMSEQ-VVFWKWISP---KMLGV-VTQTSVYHWSIEG-DSEPVKMFDRTA--NL------TN 156 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e~-vvfWkWis~---~~l~l-VT~~aVyHW~i~~-~~~P~k~f~R~~--~L------~~ 156 (1520)
...+.+||.+|-++|..|.-+++ +.=-+.++. +.+-- -|+..|=-|++-. ...|+.-|.-++ .+ .+
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 57899999999999999887666 556677764 22222 2344788888832 223443344443 11 12
Q ss_pred CeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccc---cccchhhccceeeecCCCCCCceEEEEEEecC
Q 000428 157 NQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRS---QALEAHAASFAQFKVPGNENPSVLISFATKSF 233 (1520)
Q Consensus 157 ~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~s---Q~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~ 233 (1520)
-+||. +| ....+..-.++||-+....+ |..|.|----.++++.-+ .-+++.-+. .
T Consensus 129 ~~ii~------------~G------tE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~--~pnlLlSGS--v 186 (376)
T KOG1188|consen 129 KNIIA------------CG------TELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS--DPNLLLSGS--V 186 (376)
T ss_pred CCeEE------------ec------cccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC--CCCeEEeec--c
Confidence 34554 34 22346778899998765544 789999888877776432 223332221 1
Q ss_pred CCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeE----EeccccceEEEEeccceEEEEeccchhhhhh
Q 000428 234 NAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAM----QISHKYGLIYVITKLGLLFVYDLETAAAVYR 308 (1520)
Q Consensus 234 ~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~m----qvs~k~g~iyviTK~G~l~lyDl~tg~~i~~ 308 (1520)
. |=+.|.++..++...+... .-..--++ -.|.+|.-||.+|-++-..+|+++-|.+.-+
T Consensus 187 D-----GLvnlfD~~~d~EeDaL~~-----------viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 187 D-----GLVNLFDTKKDNEEDALLH-----------VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred c-----ceEEeeecCCCcchhhHHH-----------hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 2 3355555533322111000 00000011 2579999999999999999999999997654
No 371
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.94 E-value=5.9e+02 Score=30.08 Aligned_cols=220 Identities=12% Similarity=0.132 Sum_probs=119.7
Q ss_pred CCcEEEEehhhhccccccccCCceeEEEe--ccCCeEEEE-ecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCC
Q 000428 91 QDHLQIFNIELKAKIKSHQMSEQVVFWKW--ISPKMLGVV-TQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPT 167 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e~vvfWkW--is~~~l~lV-T~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~ 167 (1520)
.+++..||--.-.-||.|.=.-.=|.=-= -+...++=. .+.+|+.|+++..-.-.| |--| + .||=.-+.+.+
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr-~rgH--~--aqVNtV~fNee 112 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR-FRGH--L--AQVNTVRFNEE 112 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee-cccc--c--ceeeEEEecCc
Confidence 47899999877777777654222110000 022333332 457899999963222211 2222 2 45555555544
Q ss_pred CCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhc---cceeeecCCCCCCceEEEEEEecCCCCcccceEEE
Q 000428 168 EKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAA---SFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHV 244 (1520)
Q Consensus 168 ~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa---~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i 244 (1520)
.. .++.| .+.-+||+|-...+.-.||+-.+- .-.++++.+. . +. +| ..-|.++.
T Consensus 113 sS-Vv~Sg----------sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----e-Iv-----aG-S~DGtvRt 169 (307)
T KOG0316|consen 113 SS-VVASG----------SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----E-IV-----AG-SVDGTVRT 169 (307)
T ss_pred ce-EEEec----------cccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----E-EE-----ee-ccCCcEEE
Confidence 33 33333 478899999876665555443221 1111111110 0 00 01 01134555
Q ss_pred EecCCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhh--hhcccCCCceEEeecc
Q 000428 245 IELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAV--YRNRISPDPIFLTSEA 322 (1520)
Q Consensus 245 ~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i--~~~rIs~~~iF~~~~~ 322 (1520)
-+|-.. + - ..|...+---++.+|..-....+-.=.|.|+|.|-+||.++ |...++.+-=.=++-.
T Consensus 170 ydiR~G--~-----l------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 170 YDIRKG--T-----L------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EEeecc--e-----e------ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 555221 0 0 11222333335566666667777777899999999999987 6666766655555554
Q ss_pred CCCCcEEEEcCCCcEEEEEeecCccccch
Q 000428 323 SSLGGFYAINRRGQVLLATVNEATIVPFV 351 (1520)
Q Consensus 323 ~~~~Gi~~Vn~~GqVl~v~i~~~~ivpyi 351 (1520)
.+..-++.-..+|.|+--.+-+.+++.-+
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeee
Confidence 44455666778899988888887776543
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.90 E-value=1.5e+02 Score=29.14 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1299 EVSEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1299 elv~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
.+.......|++++++..++.++.+-|.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5566677889999999999999888777
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.68 E-value=65 Score=37.98 Aligned_cols=67 Identities=28% Similarity=0.388 Sum_probs=54.7
Q ss_pred EeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCC-CCcEEEEcCCCcEEEEEeecC
Q 000428 278 QISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASS-LGGFYAINRRGQVLLATVNEA 345 (1520)
Q Consensus 278 qvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~-~~Gi~~Vn~~GqVl~v~i~~~ 345 (1520)
|+...-|+||.-|-.|.+|.-|..|-.|+|..++ +-++|++---.. .+-+++-...|.|+.|+++..
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 4445679999999999999999999999999775 557888755444 344788889999999998864
No 374
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.44 E-value=2.8e+02 Score=37.20 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHhhc-----CHHHHHHHHHHhcCHHHHHHHHHHhCChh---hHHHHHHHHhc
Q 000428 1223 TLYEAAKIIYAFIS-----NWAKLAVTLVKLKQFQGAVDAARKANSAK---TWKEVCFACVD 1276 (1520)
Q Consensus 1223 g~YeaAk~~y~~~~-----N~~kLA~~lv~L~~y~~Ave~AkKa~~~k---~wk~v~~acv~ 1276 (1520)
...+-.+.+++.+. +|.++--||+++.+-+.|.++-.|-...+ ...|+++--++
T Consensus 193 fR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~e 254 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYE 254 (929)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhh
Confidence 33445555555443 78888999999999999988877754322 34455555444
No 375
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=33.43 E-value=6.6e+02 Score=30.19 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=83.1
Q ss_pred cceEEEeecccccccccchhhccceeeecC------CCCCCceEEEEEEecCCCCcccceEEEEecCCCC----CCCCcc
Q 000428 188 KGNMQLFSVDQQRSQALEAHAASFAQFKVP------GNENPSVLISFATKSFNAGQVTSKLHVIELGAQP----GKPSFT 257 (1520)
Q Consensus 188 ~G~mQLyS~er~~sQ~ieghaa~F~~~~~~------g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~----~~~~f~ 257 (1520)
.-.|-||-++.+.+- ++++++ +.....+++.++.-+..|.+ +-+++.+|..++ ++.||.
T Consensus 73 D~t~kLWDv~tGk~l---------a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~--~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQL---------ATWKTNSPVKRVDFSFGGNLILASTDKQMGYT--CFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred cceeEEEEcCCCcEE---------EEeecCCeeEEEeeccCCcEEEEEehhhcCcc--eEEEEEEccCChhhhcccCceE
Confidence 446678888877532 223322 22345568888887777653 789999996543 444565
Q ss_pred cccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhh------hccc-----C-CCceEEeeccCCC
Q 000428 258 KKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVY------RNRI-----S-PDPIFLTSEASSL 325 (1520)
Q Consensus 258 kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~------~~rI-----s-~~~iF~~~~~~~~ 325 (1520)
| |+-| ++=|..+-++..-..|.---+.|-|..||+.||..+- ...| | ..+-|+|++...+
T Consensus 142 k----I~t~----~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 142 K----IPTP----DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred E----ecCC----ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc
Confidence 5 3333 3788999999999999999999999999999984332 2222 3 3578888886666
Q ss_pred CcEE
Q 000428 326 GGFY 329 (1520)
Q Consensus 326 ~Gi~ 329 (1520)
.-++
T Consensus 214 akl~ 217 (327)
T KOG0643|consen 214 AKLV 217 (327)
T ss_pred ceee
Confidence 5444
No 376
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=33.36 E-value=48 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
..++|.+|.++|++++|++..++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 35689999999999999988876
No 377
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.17 E-value=88 Score=39.35 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=69.3
Q ss_pred hhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhcc---Ch---hhHHHHHHhcCCCHHHHHHHHHhccHHHHH
Q 000428 442 AFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTV---DN---DLALKIYIKARATPKVVAAFAERREFDKIL 515 (1520)
Q Consensus 442 ~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~~---D~---~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~ 515 (1520)
...+.-.++.+.+.+|-..+-.++...-+.+|.++.=++-.. || .||+-.-.|-.+|+..|..+...|++=.++
T Consensus 512 ~~l~~M~Ik~L~~~~~F~~L~~f~~y~il~~SK~VAc~LLs~~~~~~~~~ql~lDML~rlsaH~~iIevll~~G~vl~AL 591 (657)
T KOG2377|consen 512 HYLHEMVIKTLVQHNLFYMLHQFLQYHVLSDSKPVACLLLSLESFYPPAHQLSLDMLKRLSAHDEIIEVLLSKGQVLAAL 591 (657)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCcceeEEEecccCcCccHHHHhHHHHhhhhhhHHHHHHHHcCchHHHHH
Confidence 345566788888899999999999999999999998766433 54 699999999999999999999999999999
Q ss_pred HHHHHh
Q 000428 516 IYSKQV 521 (1520)
Q Consensus 516 ~Y~~~~ 521 (1520)
||++..
T Consensus 592 R~A~~~ 597 (657)
T KOG2377|consen 592 RFARGI 597 (657)
T ss_pred HHHhhc
Confidence 999943
No 378
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=32.57 E-value=9.9e+02 Score=29.11 Aligned_cols=260 Identities=16% Similarity=0.239 Sum_probs=152.5
Q ss_pred CCeEEEEEcCCCCCccccccCcc----cccccCCcceeeeec--cCCCCC--------CCcEEEEehhhhccccccccCC
Q 000428 47 QNSVVIIDMNQPMQPLRRPITAD----SALMNPNSRILALKA--QLPGTT--------QDHLQIFNIELKAKIKSHQMSE 112 (1520)
Q Consensus 47 ~~~v~Ivdl~~~~~~~r~pi~Ad----sAimnP~~~iiAlra--~~~~~~--------g~~lQiFnle~k~klks~~~~e 112 (1520)
++++++.||.|...-.---..|+ -|--||+..--|+-. --|.++ -++|.|||..|-+-.-.|.|++
T Consensus 65 dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~ 144 (397)
T KOG4283|consen 65 DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG 144 (397)
T ss_pred CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc
Confidence 34899999987652111111111 133455543333331 012222 3779999999999999999966
Q ss_pred ceeEEEec--cC-Ce-EEEEecC-cEEEEeccCCCCccchhhcccCCCCC--eEEEeeeCCCCCeEEEEeccCCCCCCCc
Q 000428 113 QVVFWKWI--SP-KM-LGVVTQT-SVYHWSIEGDSEPVKMFDRTANLTNN--QIINYKCDPTEKWLVLIGIAPGSAERPQ 185 (1520)
Q Consensus 113 ~vvfWkWi--s~-~~-l~lVT~~-aVyHW~i~~~~~P~k~f~R~~~L~~~--qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~ 185 (1520)
.|-==.|- .- ++ ||.-|.. .|=-++|...+ | ...|+|+ .|..-.=++...|.+-.|-+
T Consensus 145 ~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-----~--sH~LsGHr~~vlaV~Wsp~~e~vLatgsa-------- 209 (397)
T KOG4283|consen 145 KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-----F--SHTLSGHRDGVLAVEWSPSSEWVLATGSA-------- 209 (397)
T ss_pred eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----c--eeeeccccCceEEEEeccCceeEEEecCC--------
Confidence 65433332 11 22 2322221 23344442111 1 1246764 48888889999999999955
Q ss_pred cccceEEEeecccccccccchhhccceeeecCC---------C-CCCceEEEEEEecCC------CCcccceEEE--Eec
Q 000428 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPG---------N-ENPSVLISFATKSFN------AGQVTSKLHV--IEL 247 (1520)
Q Consensus 186 ~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g---------~-~~~~~l~~fa~r~~~------~~~~~~kL~i--~Ei 247 (1520)
.|.+-||-+.|.. +||..+..+. | .+-++++..|..+.. |-+ .|.++ +|=
T Consensus 210 --Dg~irlWDiRras--------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd--~r~r~wn~~~ 277 (397)
T KOG4283|consen 210 --DGAIRLWDIRRAS--------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD--DRIRVWNMES 277 (397)
T ss_pred --CceEEEEEeeccc--------ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc--cceEEeeccc
Confidence 8999999987753 6776665544 3 356677777766411 100 23443 232
Q ss_pred CCCCCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCc
Q 000428 248 GAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGG 327 (1520)
Q Consensus 248 ~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~G 327 (1520)
|+..- .+|.++. ..-.-.|-+-+| +--+|+.-.+--.|-+.||-+-+|..|-|-.+--.+|-+++..++-.-
T Consensus 278 G~ntl-~~~g~~~------~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 278 GRNTL-REFGPII------HNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred Ccccc-ccccccc------ccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 33211 1232211 111234555566 677777777777788999999999888887777888888887777666
Q ss_pred EEEEcCCCcEEEEE
Q 000428 328 FYAINRRGQVLLAT 341 (1520)
Q Consensus 328 i~~Vn~~GqVl~v~ 341 (1520)
...+.++|.++--.
T Consensus 350 ~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWS 363 (397)
T ss_pred hhccccCCcccccc
Confidence 77777777766443
No 379
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=6.9e+02 Score=30.46 Aligned_cols=117 Identities=22% Similarity=0.348 Sum_probs=69.2
Q ss_pred hhHHHHHHH---HHhhchHHHHHHH---------HhhcchHHHHHHHHhhccHHHHHHHHHhcCchhhcchhhHHHHHhh
Q 000428 1345 KLMEHIKLF---STRLNIPKLIRAC---------DEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKV 1412 (1520)
Q Consensus 1345 kLmehlk~y---~~~iNi~K~i~~c---------e~~~lW~E~vfLy~~~~e~d~A~~~mi~h~~~a~~h~~fk~ii~kv 1412 (1520)
++||.+|.- ..+++.-..+|.. |.+..=.+++-.+-.-|+.+.|++++++-|.+-+. . +
T Consensus 95 ~vmEylKg~~dl~t~i~~ietlr~VtEgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETyg--s-------~ 165 (439)
T COG5071 95 HVMEYLKGIDDLKTKINLIETLRTVTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYG--S-------F 165 (439)
T ss_pred HHHHhccCcccccchHhHHHHHHHHhcCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhcc--c-------h
Confidence 455555541 2344444444433 34566678888999999999999999999755442 1 1
Q ss_pred hhhHHHHHHHHHHHhhCcchHHHHHHHHhhcCCHHHHHHHHHhcCCccchHHHHHHHhhcChHHHHHHHHHHhhhhhhhH
Q 000428 1413 ANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYE 1492 (1520)
Q Consensus 1413 an~elyYkai~FyL~~~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal~~l~ieeed~~ 1492 (1520)
.-.| -++|.|++ |.....++|-.+. ....+.++.=|.|++|++
T Consensus 166 ~~Se----kv~fiLEQ--------~rL~vl~~Dy~~A-------------------------~~~~kKI~KK~Fe~~d~~ 208 (439)
T COG5071 166 DLSE----KVAFILEQ--------VRLFLLRSDYYMA-------------------------STYTKKINKKFFEKEDVQ 208 (439)
T ss_pred hHHH----HHHHHHHH--------HHHHHhccchHHH-------------------------HHHHHHHHHHHhccccHH
Confidence 1122 45666654 2233344454332 334556777788899999
Q ss_pred HHHHhHHhhhCCChHHH
Q 000428 1493 RLRESIDMHDNFDQIGL 1509 (1520)
Q Consensus 1493 ~Lr~sId~y~nfd~~~l 1509 (1520)
+|. |.=|.=-=+++|
T Consensus 209 slK--lkyYeL~V~i~L 223 (439)
T COG5071 209 SLK--LKYYELKVRIGL 223 (439)
T ss_pred HHH--HHHHHHhheeec
Confidence 887 554443333333
No 380
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=32.17 E-value=3.4e+02 Score=34.59 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=48.1
Q ss_pred cCcchH-HHHHhhhhccccHHHHHHHHHhhc------------CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHH
Q 000428 1207 PNVANL-QNVGDRLYDDTLYEAAKIIYAFIS------------NWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEV 1270 (1520)
Q Consensus 1207 ~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~~------------N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v 1270 (1520)
||.+=+ ..-|..+.-.|+.+.|...|+... .+..+|.|+..+.+|++|.+++.+......|...
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 665544 456778888888888888888533 3455588888888999998888888877788654
No 381
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=32.07 E-value=37 Score=42.53 Aligned_cols=98 Identities=10% Similarity=-0.021 Sum_probs=60.5
Q ss_pred ceEEEEecCCCCCCC-----CcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCC
Q 000428 240 SKLHVIELGAQPGKP-----SFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPD 314 (1520)
Q Consensus 240 ~kL~i~Ei~~~~~~~-----~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~ 314 (1520)
+++.|-|+-+. +.. +..|-.-++-|.++... ..-.+=-+||++||.|||+|+.+-+ ++.
T Consensus 237 ~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~--------------fLS~sfD~~lKlwDtETG~~~~~f~-~~~ 300 (503)
T KOG0282|consen 237 GLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTS--------------FLSASFDRFLKLWDTETGQVLSRFH-LDK 300 (503)
T ss_pred ceEEEEEEecC-cceehhhhcchhhhhhhhccccCCe--------------eeeeecceeeeeeccccceEEEEEe-cCC
Confidence 67888888442 221 23344456666655211 1122235899999999999997655 445
Q ss_pred ceEEeeccCCC-CcEEEEcCCCcEEEEEeecCccccchhc
Q 000428 315 PIFLTSEASSL-GGFYAINRRGQVLLATVNEATIVPFVSG 353 (1520)
Q Consensus 315 ~iF~~~~~~~~-~Gi~~Vn~~GqVl~v~i~~~~ivpyi~~ 353 (1520)
++++--.+.+. +=+++-.-+|.|+..-|....||.-.-.
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 55555555555 3345455888888888888877764433
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.02 E-value=4e+02 Score=32.19 Aligned_cols=189 Identities=18% Similarity=0.153 Sum_probs=111.3
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCcchhHHhhccccCChhhHHHHhhcCChHhHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 000428 625 PRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYC 704 (1520)
Q Consensus 625 ~~IA~lCe~agL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~ 704 (1520)
-+.|+-+.+..-+++|...|+.+ .-..-..+...+.+. ..-.++..+=+++.++.-.+...|+..++|-
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~i------L~kg~s~dek~~nEq-----E~tvlel~~lyv~~g~~~~l~~~i~~sre~m 75 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRI------LGKGVSKDEKTLNEQ-----EATVLELFKLYVSKGDYCSLGDTITSSREAM 75 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH------hcCCCChhhhhhhHH-----HHHHHHHHHHHHhcCCcchHHHHHHhhHHHH
Confidence 35667777788888888877633 222111221112111 1112334444455555555555666666666
Q ss_pred hhhhh-------HHHHHHHhhhc-cchhHHHHHhhhcccCC-C------ChhHHHHHHHHHHhCChhHHHHHhhcCCCCC
Q 000428 705 EQLGV-------EACIKLFEQFK-SYEGLYFFLGSYLSSSE-D------PDIHFKYIEAAAKTGQIKEVERVTRESNFYD 769 (1520)
Q Consensus 705 ~~~g~-------~~li~~fe~~~-~~e~L~~yL~~~~~~~~-d------p~V~~kyi~A~~k~~q~~EvEr~~resn~yd 769 (1520)
+.+.. ..||+.|+..+ ++|+-..-+...+.... + -+...|+|.++.++|+++|-
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysda----------- 144 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDA----------- 144 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-----------
Confidence 66542 33566665443 67888888777776532 2 35788999999999999965
Q ss_pred hHhHHHHHhhcCCCCCCCcceeccccCChhhhhHHhhcchhHHHHHHHhhhcCCCChhHHHHHHhhCCCChhHHHHH-HH
Q 000428 770 PEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGL-IL 848 (1520)
Q Consensus 770 ~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~L-L~ 848 (1520)
...++..|-|-|-+|..|.++ +.|||.+.-+-.|..--++..+-..+.+ ....+=|+....++| |+
T Consensus 145 lalIn~ll~ElKk~DDK~~Li-----------~vhllESKvyh~irnv~KskaSLTaArt--~Ans~YCPpqlqa~lDL~ 211 (421)
T COG5159 145 LALINPLLHELKKYDDKINLI-----------TVHLLESKVYHEIRNVSKSKASLTAART--LANSAYCPPQLQAQLDLL 211 (421)
T ss_pred HHHHHHHHHHHHhhcCcccee-----------ehhhhhHHHHHHHHhhhhhhhHHHHHHH--HhhccCCCHHHHHHHHHh
Confidence 345778888989889888775 4566665544444433322211112222 223466788888887 44
No 383
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=31.78 E-value=1e+03 Score=29.82 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.4
Q ss_pred hcCCHHHHHHHHHhhcCccccc-cch
Q 000428 1306 NRGYFNELISLMESGLGLERAH-MGI 1330 (1520)
Q Consensus 1306 ~~G~f~eLI~Lle~gl~lerAh-~~~ 1330 (1520)
.....++||+.|.+|-.+++.+ .||
T Consensus 238 d~~~ldkAi~~Y~kgFe~~~~~Y~GI 263 (374)
T PF13281_consen 238 DRESLDKAIEWYRKGFEIEPDYYSGI 263 (374)
T ss_pred chHHHHHHHHHHHHHHcCCccccchH
Confidence 3445999999999998887543 553
No 384
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=31.49 E-value=1.4e+02 Score=36.53 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=54.7
Q ss_pred ceEEEEecCCCCCCCCcccccccccCCCCCCCCcceeEEecc--ccceEEEEeccceEEEEeccchhhhhhcccCCCc--
Q 000428 240 SKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISH--KYGLIYVITKLGLLFVYDLETAAAVYRNRISPDP-- 315 (1520)
Q Consensus 240 ~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~--k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~-- 315 (1520)
|.+||-+.++. + .--++-.||...| .|.++. .-..|+.-|--|+|++||+.|...+-+-.-++.+
T Consensus 50 gsv~lyd~~tg--~-----~l~~fk~~~~~~N----~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 50 GSVRLYDKGTG--Q-----LLEEFKGPPATTN----GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred CeEEEEeccch--h-----hhheecCCCCccc----ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 46888887662 1 2223445666666 343333 4557888999999999999999988888878877
Q ss_pred eEEeeccCCCCcEEEEc
Q 000428 316 IFLTSEASSLGGFYAIN 332 (1520)
Q Consensus 316 iF~~~~~~~~~Gi~~Vn 332 (1520)
.|++-...-.++|++-+
T Consensus 119 ~f~~ld~nck~~ii~~G 135 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACG 135 (376)
T ss_pred cceEeeccCcCCeEEec
Confidence 66654433355566555
No 385
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=31.37 E-value=1.7e+03 Score=31.57 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCcceeEEeccccceEEEE-eccceEEEEeccchhhh
Q 000428 271 DDFPVAMQISHKYGLIYVI-TKLGLLFVYDLETAAAV 306 (1520)
Q Consensus 271 ~DFPv~mqvs~k~g~iyvi-TK~G~l~lyDl~tg~~i 306 (1520)
-..|.+|.++.. |-|||. +..+-|.+||..||.+.
T Consensus 803 l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 803 LQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred ccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEE
Confidence 356888888765 446664 56789999999988654
No 386
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=30.59 E-value=90 Score=33.71 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=42.9
Q ss_pred chHHHHHhhhhccccHHHHHHHHHhhcC------H-----HHHHHHHHHhcCHHHHHHHHHH
Q 000428 1210 ANLQNVGDRLYDDTLYEAAKIIYAFISN------W-----AKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1210 a~v~~vgd~~~eeg~YeaAk~~y~~~~N------~-----~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.++..-|...++.|.|++|.+.++.+.+ | ..|+.+|-+.++|.+|++.+.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3456788999999999999999998873 2 3458888889999999999988
No 387
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.54 E-value=4.3e+02 Score=36.77 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=56.3
Q ss_pred ccccceEEEeecccccccccchhhccceee-----ecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccc
Q 000428 185 QLVKGNMQLFSVDQQRSQALEAHAASFAQF-----KVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKK 259 (1520)
Q Consensus 185 ~~i~G~mQLyS~er~~sQ~ieghaa~F~~~-----~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk 259 (1520)
|..+|+|=||+...=++--=+.+-+.+.+. -++=|+...||++=+ .+ .|++.|=++.++. .+|.--
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG----a~---~geI~iWDlnn~~--tP~~~~ 156 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG----AD---DGEILIWDLNKPE--TPFTPG 156 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc----CC---CCcEEEeccCCcC--CCCCCC
Confidence 467899999999884222222222222111 012233334444322 11 3789999997742 223210
Q ss_pred cccccCCCCCCCCcceeEEeccccceE-EEEeccceEEEEeccch
Q 000428 260 QADLFFPPDFADDFPVAMQISHKYGLI-YVITKLGLLFVYDLETA 303 (1520)
Q Consensus 260 ~~d~~fpp~~~~DFPv~mqvs~k~g~i-yviTK~G~l~lyDl~tg 303 (1520)
. .+.-|...++.+..|-.-| -=++-.|+.-+||+.--
T Consensus 157 --~-----~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 157 --S-----QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred --C-----CCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 1 1234667778888777644 44667789999998643
No 388
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=1.1e+03 Score=28.91 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=41.8
Q ss_pred ccccchhhhHHHHHHHh----hCchHHHHHHHHHhCCChHHHHHHHHHcC----CHHHHHHHHHhcCCcHHHHHHHHHhh
Q 000428 1032 FSGNFNLQNLLILTAIK----ADPSRVMDYVNRLDNFDGPAVGEVAVEAQ----LYEEAFAIFKKFNLNVQAVNVLLDNI 1103 (1520)
Q Consensus 1032 fs~N~~LqnLlIlta~k----~d~~kl~~yI~~ldnyd~~~IA~ia~e~~----L~EEA~~LYkK~~~~~~Ai~vLi~~~ 1103 (1520)
-.-|.||..||++- -| .|++...+-+ .+|+..|-..| |-+.-..+.+|+|+...||.-||++.
T Consensus 26 ~d~~~~le~LL~~E-kK~RqasD~~~~~kvl--------~~i~dLl~S~~~~~~Lneql~~L~kKhGQlk~sI~~MIq~v 96 (439)
T COG5071 26 IDIDANLEKLLIFE-KKVRQASDTSTNTKVL--------IYIADLLFSAGDFQGLNEQLVSLFKKHGQLKQSITSMIQHV 96 (439)
T ss_pred cchhhHHHHHHHHH-HHHhhhccHHHHHHHH--------HHHHHHHhhcCchhhhhhHHHHHHHHcchHHHHHHHHHHHH
Confidence 45577888888853 22 2333222211 24556666554 44578889999999999999999976
Q ss_pred h
Q 000428 1104 R 1104 (1520)
Q Consensus 1104 ~ 1104 (1520)
.
T Consensus 97 m 97 (439)
T COG5071 97 M 97 (439)
T ss_pred H
Confidence 3
No 389
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=1.4e+02 Score=35.91 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=53.6
Q ss_pred hhcCHHHHHHHHHHhcCHHHHHHHHHHhC-----ChhhHHHHHHHHh---cchhhhHHHhhccc--cccccccHHH---H
Q 000428 1234 FISNWAKLAVTLVKLKQFQGAVDAARKAN-----SAKTWKEVCFACV---DAEEFRLAQICGLN--IIVQVDDLEE---V 1300 (1520)
Q Consensus 1234 ~~~N~~kLA~~lv~L~~y~~Ave~AkKa~-----~~k~wk~v~~acv---~~~e~rLA~~~gl~--li~~~d~l~e---l 1300 (1520)
....|.-||.+|..+|++..|+.++++|. |++.|--..++-+ +...-..|.. -++ +..+|.++.. |
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~-ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA-LLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH-HHHHHHhcCCccHHHHHHH
Confidence 34478888888888888888888888774 5555543322222 1111111110 011 4456655543 3
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1301 SEYYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1301 v~~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
.--+.+.|+|.+++...++-+.+-.+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 34456688888888888877655544
No 390
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=29.54 E-value=1.4e+03 Score=30.94 Aligned_cols=229 Identities=17% Similarity=0.207 Sum_probs=104.8
Q ss_pred hhHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCHHHHHH
Q 000428 486 DLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITD 565 (1520)
Q Consensus 486 ~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv~~vv~ 565 (1520)
..|+.+-..-.-++++-.-+.+.|-+.+++..+..-....-=..+|.++.. +.. .-.
T Consensus 349 ~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~-dd~----------------------~r~ 405 (708)
T PF05804_consen 349 NVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSM-DDE----------------------ARS 405 (708)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhcc-CHh----------------------hHH
Confidence 355555555556666666666666666666666432222222333333311 111 112
Q ss_pred HHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHHHHhhhccCchhHHHHhhCCCCCC--------CChh---HHHHHHHHh
Q 000428 566 LFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSH--------YDRP---RIAQLCEKA 634 (1520)
Q Consensus 566 ~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~--------yD~~---~IA~lCe~a 634 (1520)
.|-..+ ++.+|.+.+..++++.-.+.=.-+.+||-.+|+.|..|...+.|.. -|+- -|-+++...
T Consensus 406 ~f~~Td----cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 406 MFAYTD----CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHD 481 (708)
T ss_pred HHhhcc----hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 333332 3444445454444444445556677777777777777654433321 1111 112222222
Q ss_pred CcHHHHHHhcCCCcchhHHhhccccCChhhHHHHhhc---CCh-----------HhHHHHHHHHHHhhcc---chHHHHH
Q 000428 635 GLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGT---LSR-----------EWALECMKDLLLVNLR---GNLQIIV 697 (1520)
Q Consensus 635 gL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~---l~~-----------~~~~~~l~~~l~~n~~---~nlq~vv 697 (1520)
|--++.|.=| +.+|=+++...+ +++++++-+|. |+. -.-+..|+.+|+.... --+++|+
T Consensus 482 ~~~k~~f~~~--i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 482 GPLKELFVDF--IGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred chHHHHHHHH--HHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 2333322211 223334444333 67777777777 221 1234455666643322 2233333
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhccchhHHHHHhhhcccCCCChhHHHHHHHHHHh
Q 000428 698 QTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKT 752 (1520)
Q Consensus 698 ~~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~ 752 (1520)
=+++-=. ..++-.+.-+.|..+-|+.-| ...-+|-|+....+++.-+.
T Consensus 558 ~~gtla~----d~~~A~lL~~sgli~~Li~LL---~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 558 LLGTLAS----DPECAPLLAKSGLIPTLIELL---NAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHHC----CHHHHHHHHhCChHHHHHHHH---HhhCchHHHHHHHHHHHHHH
Confidence 3332111 112233333333333333333 22346788888888888775
No 391
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.32 E-value=1.5e+03 Score=30.13 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCCCCCcHHHHHHHHhhcCCCChhhhHHHHHHHHhhcchhhHHHHHhhcccccch-------hhhhhhh
Q 000428 409 DTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSE-------ELGDLVK 481 (1520)
Q Consensus 409 ~Ti~rfk~~~~~~Gq~~pLL~Yf~~ll~~g~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se-------~lGD~~~ 481 (1520)
.+|.+|-+.+..|++ ...+|..|-.-......| +-.||..-.-..++ .|=+++.
T Consensus 58 ~~i~~y~~~gG~p~~-------vv~~Ls~~Y~g~aq~~~l------------l~~WL~~~~~~~~~v~~~~~~~lk~~i~ 118 (584)
T PF04858_consen 58 DTIKRYFRAGGDPEE-------VVELLSENYRGYAQMCNL------------LAEWLIDLGVSPEDVQEIVESHLKELIK 118 (584)
T ss_pred HHHHHHHHCCCCHHH-------HHHHHHHhcccHHHHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q ss_pred cc-ChhhHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCH
Q 000428 482 TV-DNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDY 560 (1520)
Q Consensus 482 ~~-D~~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv 560 (1520)
++ ||..|=.++...+-+++-+.-+.+ .+.|..++-.+...+|+ -.=.
T Consensus 119 ~~FD~~k~D~ift~~~~~p~WL~~mi~----------------~~~WR~liy~Lae~~p~----------------~l~L 166 (584)
T PF04858_consen 119 KRFDPKKADTIFTEEGSTPAWLDEMIE----------------HPRWRSLIYELAERHPD----------------CLFL 166 (584)
T ss_pred HhcChHHHHHHHhcCCCCChHHHHHhc----------------CcHHHHHHHHHHHHCCC----------------CHHH
Q ss_pred HHHHHHHHhCCcHHHHHHHH-----------------HHhhcCCCCCCchhhhHHHHhhhccC-c----hhHHHHhhCCC
Q 000428 561 NTITDLFLQRNLIREATAFL-----------------LDVLKPNLPEHGFLQTKVLEINLVTF-P----NVADAILANGM 618 (1520)
Q Consensus 561 ~~vv~~F~~~~l~~e~t~~L-----------------l~~lk~n~~e~~~LQt~Lle~nl~~~-p----~Vad~Il~~~~ 618 (1520)
+-+++.-.++|+..|.+++- .+++..+.++...-..+|-.+--.+. . |+.=..+..+.
T Consensus 167 ~faik~IsdaG~~~Ei~s~~taa~~~~VF~~vl~~~i~~~~~~~~d~~~~~~~~l~k~~C~sehTYlyaQ~lL~~L~~~~ 246 (584)
T PF04858_consen 167 NFAIKLISDAGYQHEITSVSTAAQQFEVFSRVLKDSISRFLAAGEDELQEAIAELKKMCCHSEHTYLYAQALLHELSQES 246 (584)
T ss_pred HHHHHHHHHcchHHHHHhHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhcc
Q ss_pred CCCCChhHHHHHHHHhCcHHHHHHhcCCCcchhHHhhccccCChhhHHHHhhcCChHhHHHHHHHHHHhhccchHHHHHH
Q 000428 619 FSHYDRPRIAQLCEKAGLYMRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQ 698 (1520)
Q Consensus 619 l~~yD~~~IA~lCe~agL~e~Ale~Y~~~~dikR~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~ 698 (1520)
-+.+-..+|++..++. |..-=.+...|..++-.+..-+ .+.+++.+||+.|
T Consensus 247 ~~~~~~~rlsqELe~~-----A~~~~~~vt~i~~aL~~s~~~p--------------~a~~ai~smLs~~---------- 297 (584)
T PF04858_consen 247 DGGSAMRRLSQELERE-----AAKRGHDVTDITLALNGSSSYP--------------EACQAIASMLSSN---------- 297 (584)
T ss_pred ccchHHHHHHHHHHHH-----HHHcCCCcHHHHHHHhcCccCc--------------hHHHHHHHHHhcC----------
Q ss_pred HHHHHHhhhhhHHHHHHHhhhccchhHHHHHhhhcccCCCChhHHHHHHHHHHhCC
Q 000428 699 TAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQ 754 (1520)
Q Consensus 699 ~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~dp~V~~kyi~A~~k~~q 754 (1520)
.+.+..++.+++.|.+.+ --=|.+.++|.+---++.+.-+-|.
T Consensus 298 -------~l~paDI~~Ly~~Y~~~~------pPPV~lLR~P~~l~lLld~LF~pg~ 340 (584)
T PF04858_consen 298 -------ALNPADITKLYRMYSSPD------PPPVELLRHPQFLDLLLDALFKPGS 340 (584)
T ss_pred -------CCCHHHHHHHHHHhccCC------CCCchhhcCHHHHHHHHHHHcCCCc
No 392
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=28.74 E-value=1.5e+03 Score=29.92 Aligned_cols=343 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHhc-------CcchHHHHHHHHHHhccCCCCCCchhHHHHHHHHH--hCCCCHHHHHHHHHh
Q 000428 955 KLQARYVVERMDADLWEKVLT-------PENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFM--TADLPHELIELLEKI 1025 (1520)
Q Consensus 955 k~~a~ylvk~~~~~lw~~vl~-------~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~--~a~lp~eLi~lLeki 1025 (1520)
|..+|+|+|.=+.+||.-.|+ .---||.-.+ |--.-++.++ .|. +..+..|-|..|++
T Consensus 74 kLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~-qAy~f~l~ki-----------g~di~s~siW~eYi~FL~~- 140 (656)
T KOG1914|consen 74 KLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMV-QAYDFALEKI-----------GMDIKSYSIWDEYINFLEG- 140 (656)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHH-HHHHHHHHHh-----------ccCcccchhHHHHHHHHHc-
Q ss_pred hhcCCCccccchhhhHHHHHHHhh-------------CchHHHHHHHHHh--CCChHHHHHHHHHcCCHHHHHHHHHhcC
Q 000428 1026 VLQNSAFSGNFNLQNLLILTAIKA-------------DPSRVMDYVNRLD--NFDGPAVGEVAVEAQLYEEAFAIFKKFN 1090 (1520)
Q Consensus 1026 vl~~~~fs~N~~LqnLlIlta~k~-------------d~~kl~~yI~~ld--nyd~~~IA~ia~e~~L~EEA~~LYkK~~ 1090 (1520)
+-..|...+|.-+.-+==.+ .|+ |+.....-|++.. +| +++....|--|+.+|+.-.
T Consensus 141 vea~gk~ee~QRI~~vRriY-qral~tPm~nlEkLW~DY~~fE~~IN~~tarK~-------i~e~s~~Ym~AR~~~qel~ 212 (656)
T KOG1914|consen 141 VEAVGKYEENQRITAVRRIY-QRALVTPMHNLEKLWKDYEAFEQEINIITARKF-------IGERSPEYMNARRVYQELQ 212 (656)
T ss_pred ccccccHHHHHHHHHHHHHH-HHHhcCccccHHHHHHHHHHHHHHHHHHHHHHH-------HHhhCHHHHHHHHHHHHHH
Q ss_pred CcHHHHHH----------------------HHHhhhh------------------HHHHHHHHHHhCChhHHHHHHHHHH
Q 000428 1091 LNVQAVNV----------------------LLDNIRS------------------IERAVEFAFRVEEDAVWSQVAKAQL 1130 (1520)
Q Consensus 1091 ~~~~Ai~v----------------------Li~~~~~------------------~~~A~e~Aek~~~~eVw~~lgka~l 1130 (1520)
...+-.++ +|+-..+ ++.++.+.-. -|+|||..++-.+
T Consensus 213 ~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~--~peiWy~~s~yl~ 290 (656)
T KOG1914|consen 213 NLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY--HPEIWYDYSMYLI 290 (656)
T ss_pred HHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Q ss_pred hhccHHHHHHHHHhcCCcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcc
Q 000428 1131 REGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVA 1210 (1520)
Q Consensus 1131 ~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a 1210 (1520)
..++ ...-+-.-.+...+..=+..+++.+--..+..... |-++|+ +|
T Consensus 291 ~~s~---l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~--------------Ly~~~a---------~~------- 337 (656)
T KOG1914|consen 291 EISD---LLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL--------------LYFALA---------DY------- 337 (656)
T ss_pred HhhH---HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH---------hh-------
Q ss_pred hHHHHHh---hhhccccHHHHHHHHHhhc--CHHHHHHHHHHhcCHHHHHHHHHHhCChhhHH-HHHHHHhcchhhhHHH
Q 000428 1211 NLQNVGD---RLYDDTLYEAAKIIYAFIS--NWAKLAVTLVKLKQFQGAVDAARKANSAKTWK-EVCFACVDAEEFRLAQ 1284 (1520)
Q Consensus 1211 ~v~~vgd---~~~eeg~YeaAk~~y~~~~--N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk-~v~~acv~~~e~rLA~ 1284 (1520)
=++.-+ .=...+.|+.++.....-. -|.++-..-.+-.=...|..+.+||.+++.=. +|--+|.
T Consensus 338 -eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A--------- 407 (656)
T KOG1914|consen 338 -EESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA--------- 407 (656)
T ss_pred -HHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH---------
Q ss_pred hhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHHHhccChhhhHHHHHHHHHhhchHHHHH
Q 000428 1285 ICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIR 1364 (1520)
Q Consensus 1285 ~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLailyAky~pekLmehlk~y~~~iNi~K~i~ 1364 (1520)
+++||. .+...-|...||-|+ .|-|--++++. +.+++|-.....-|+--+-+
T Consensus 408 ---------------~mEy~c-skD~~~AfrIFeLGL----kkf~d~p~yv~--------~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 408 ---------------LMEYYC-SKDKETAFRIFELGL----KKFGDSPEYVL--------KYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred ---------------HHHHHh-cCChhHHHHHHHHHH----HhcCCChHHHH--------HHHHHHHHhCcchhHHHHHH
Q ss_pred HHHhh--------cchHHHHHHHHhhccHHHHHHH
Q 000428 1365 ACDEQ--------QHWKELTYLYIQYDEFDNAATT 1391 (1520)
Q Consensus 1365 ~ce~~--------~lW~E~vfLy~~~~e~d~A~~~ 1391 (1520)
..... ..|..+.---...|+...++..
T Consensus 460 r~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 460 RVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
No 393
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=28.70 E-value=1.3e+02 Score=32.49 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=50.3
Q ss_pred EEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecC----------ccccchhcccCC
Q 000428 288 VITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEA----------TIVPFVSGQLNN 357 (1520)
Q Consensus 288 viTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~----------~ivpyi~~~l~n 357 (1520)
++|.+=+|.||. ...+..||+++..||--.- ....|+++.+..|.. +|-.++.+ |
T Consensus 40 ~lT~~H~llL~~---~~l~~vn~L~~~vV~e~~~---------~~~~~~~~gl~~D~~~~t~W~ys~~~I~ei~i~---~ 104 (147)
T PF05131_consen 40 ALTEFHLLLLYS---DRLIAVNRLNNKVVFEESL---------LETGGKILGLCRDPSSNTFWLYSSNSIFEIVIN---N 104 (147)
T ss_pred EeeceeeeEEeC---CEEEEEEecCCcEEEEEEe---------ccCCcceeeEEEcCCCCeEEEEeCCeeEEEEcC---c
Confidence 566777777775 5688889999998886443 334444555555543 33333322 2
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcccCHHHHHHHHHcC
Q 000428 358 LELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES 400 (1520)
Q Consensus 358 ~~la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~s 400 (1520)
. + .....-++.+|+|++|-++|.+.
T Consensus 105 E--------------~----r~vWk~yl~~~~fd~Al~~~~~~ 129 (147)
T PF05131_consen 105 E--------------D----RDVWKIYLDKGDFDEALQYCKTN 129 (147)
T ss_pred c--------------h----HHHHHHHHhcCcHHHHHHHccCC
Confidence 1 1 23345577789999999998875
No 394
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=28.52 E-value=6.2e+02 Score=25.42 Aligned_cols=143 Identities=20% Similarity=0.175 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhcC-------CcchHHHHHHHHHhcCChhHHHHHHHHHhhhcCCcchhH-HHHH-
Q 000428 1119 DAVWSQVAKAQLREGLVSDAIESFIRAD-------DATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDS-ELIY- 1189 (1520)
Q Consensus 1119 ~eVw~~lgka~l~~~~v~eAI~~Yika~-------d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~-~lv~- 1189 (1520)
...++..+..+...+...+++..+.... ....+..........+.+...++.+..+.....++.... ....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 4555566666666666666666654432 112222333334444445555555554433333331111 1222
Q ss_pred HHHhhCChhhHHHHhcCc---------CcchHHHHHhhhhccccHHHHHHHHHhhc----C-----HHHHHHHHHHhcCH
Q 000428 1190 AYAKIDRLGDIEEFILMP---------NVANLQNVGDRLYDDTLYEAAKIIYAFIS----N-----WAKLAVTLVKLKQF 1251 (1520)
Q Consensus 1190 ~yAk~~~l~ele~fl~~~---------N~a~v~~vgd~~~eeg~YeaAk~~y~~~~----N-----~~kLA~~lv~L~~y 1251 (1520)
++...|++.....+.... ........+..+...++++.|...+.... + +..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 455555554443332210 01111223333444555555555544332 2 44455555555556
Q ss_pred HHHHHHHHHh
Q 000428 1252 QGAVDAARKA 1261 (1520)
Q Consensus 1252 ~~Ave~AkKa 1261 (1520)
++|.....++
T Consensus 219 ~~a~~~~~~~ 228 (291)
T COG0457 219 EEALEYYEKA 228 (291)
T ss_pred HHHHHHHHHH
Confidence 6655555553
No 395
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.41 E-value=1.3e+03 Score=29.17 Aligned_cols=238 Identities=17% Similarity=0.242 Sum_probs=141.4
Q ss_pred cccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEec-----cCCeEEEEe---cCcEEEEeccCCCC
Q 000428 72 LMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWI-----SPKMLGVVT---QTSVYHWSIEGDSE 143 (1520)
Q Consensus 72 imnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWi-----s~~~l~lVT---~~aVyHW~i~~~~~ 143 (1520)
..+|..+.+|--.. ...+-+|+.++... -..-+....+.+| +++.-.+|| +..+.-|++..+..
T Consensus 166 ~fs~~g~~l~~~~~-----~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 166 DFSPDGRALAAASS-----DGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred EEcCCCCeEEEccC-----CCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 34555554444433 67888999855542 0111112333333 233335555 45678888844334
Q ss_pred ccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeeccc-ccccccchhhccce--eeecCCCC
Q 000428 144 PVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQ-QRSQALEAHAASFA--QFKVPGNE 220 (1520)
Q Consensus 144 P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er-~~sQ~ieghaa~F~--~~~~~g~~ 220 (1520)
=.++|.=|. ..|..-..++++ =+++.|= -.|.+.+|.++. ..-..++||...=. .+..+|
T Consensus 238 ~~~~l~gH~----~~v~~~~f~p~g-~~i~Sgs----------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~-- 300 (456)
T KOG0266|consen 238 NLKTLKGHS----TYVTSVAFSPDG-NLLVSGS----------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG-- 300 (456)
T ss_pred EEEEecCCC----CceEEEEecCCC-CEEEEec----------CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC--
Confidence 445554342 234444555555 4555553 489999999998 57788888876322 233333
Q ss_pred CCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCCCCCCCcc--e-eEEeccccceEEEEeccceEEE
Q 000428 221 NPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFP--V-AMQISHKYGLIYVITKLGLLFV 297 (1520)
Q Consensus 221 ~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DFP--v-~mqvs~k~g~iyviTK~G~l~l 297 (1520)
++++-+.. . +.++|-++.... ++ .+...- ..+.| + +++.|+.-..+++.+-.|-+-+
T Consensus 301 ---~~l~s~s~--d-----~~i~vwd~~~~~----~~--~~~~~~----~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~ 360 (456)
T KOG0266|consen 301 ---NLLVSASY--D-----GTIRVWDLETGS----KL--CLKLLS----GAENSAPVTSVQFSPNGKYLLSASLDRTLKL 360 (456)
T ss_pred ---CEEEEcCC--C-----ccEEEEECCCCc----ee--eeeccc----CCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence 35554432 3 457777775431 11 011111 12333 3 4588888889999999999999
Q ss_pred Eeccchhhhhhcc--cCC-CceEEeeccCCCCcEEEEcCCCcEEEEEeecCccccchhcc
Q 000428 298 YDLETAAAVYRNR--ISP-DPIFLTSEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQ 354 (1520)
Q Consensus 298 yDl~tg~~i~~~r--Is~-~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~~ivpyi~~~ 354 (1520)
||+.++.++=.-+ ... ..+|-.+..+.+..|+..-+.|-|....+..-.+++.+...
T Consensus 361 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 361 WDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9999987653333 332 35666666555666777779999999999888888877654
No 396
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=28.24 E-value=5.1e+02 Score=35.29 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=63.5
Q ss_pred HhcCCCCchHH--HHHHHHHHHcccCHHHHHHHHHcCCCCCCCCHHHHHHHhcCCCCCCCCCcHHHHHHHHhhc------
Q 000428 366 KRGNLPGAENL--VVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTR------ 437 (1520)
Q Consensus 366 ~r~~lpgad~l--~~~~F~~l~~~g~y~~AA~~AA~sP~g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Yf~~ll~~------ 437 (1520)
.|-.|.+||.. ...+-+.+|..|+|..+|.--+.- ...+.-|+.+|.--. ..-.|..|+-.|+.
T Consensus 120 a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m-------~~sL~~l~~~pd~~~-r~~~le~l~nrLEa~vsp~L 191 (766)
T PF10191_consen 120 ARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEM-------QRSLAVLQDVPDYEE-RRQQLEALKNRLEALVSPQL 191 (766)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHHHHHHcCCCchhH-HHHHHHHHHHHHHHHhhHHH
Confidence 34458889988 778889999999999988776654 345666776664432 44566666666654
Q ss_pred ----CCCChhhhHHHHHHHHhhcchhhHHHHH
Q 000428 438 ----GKLNAFESLELSRLVVNQNKKNLLENWL 465 (1520)
Q Consensus 438 ----g~ln~~eslEL~r~vl~qnr~~LlekWL 465 (1520)
...|...+-.+++..-.=+|.+-+++++
T Consensus 192 v~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y 223 (766)
T PF10191_consen 192 VQALNSRDVDAAKEYVKIFSSIGREPQLEQYY 223 (766)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2556667777777777777776666555
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.16 E-value=1e+03 Score=27.94 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=18.7
Q ss_pred HHHHHHHHhhh-------cCCcchhHHHHHHHHhhCChhhHH
Q 000428 1167 LVRYLLMVRQK-------VKEPKVDSELIYAYAKIDRLGDIE 1201 (1520)
Q Consensus 1167 Li~yL~m~r~~-------~~ep~id~~lv~~yAk~~~l~ele 1201 (1520)
..+|++.|-+- .-+|.+.+.++..|.+.|++.+.+
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 110 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAE 110 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHH
Confidence 66666654442 245566556666666666666664
No 398
>PRK15331 chaperone protein SicA; Provisional
Probab=28.08 E-value=5.5e+02 Score=28.64 Aligned_cols=113 Identities=5% Similarity=-0.039 Sum_probs=62.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHH--hc---CCcchHHHHHHHHHhcCChhHHHH
Q 000428 1095 AVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFI--RA---DDATQFLDVIRAAEDADVYHDLVR 1169 (1520)
Q Consensus 1095 Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yi--ka---~d~s~~~evi~~a~~a~~~e~Li~ 1169 (1520)
.+.-.+.+...+.+...+.+. .-+--|.+|--+-..|+++||..+|- -. .|+..+..+-.++-..++|+.-++
T Consensus 15 ~i~~al~~G~tlk~l~gis~~--~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~ 92 (165)
T PRK15331 15 MIWDAVSEGATLKDVHGIPQD--MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACD 92 (165)
T ss_pred HHHHHHHCCCCHHHHhCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555554 44555666666677888888888852 22 333333344444444555555555
Q ss_pred HHHHHhhh-cCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHHHHHHHhhcC
Q 000428 1170 YLLMVRQK-VKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISN 1237 (1520)
Q Consensus 1170 yL~m~r~~-~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N 1237 (1520)
...+|=.. ..||.. ..-.|++++..|+-+.|+..|..+-+
T Consensus 93 ~Y~~A~~l~~~dp~p----------------------------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 93 LYAVAFTLLKNDYRP----------------------------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHcccCCCCc----------------------------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55542221 222222 35567777777777777777776655
No 399
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.00 E-value=8.7e+02 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=25.7
Q ss_pred CchhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcCCC
Q 000428 606 FPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTEL 647 (1520)
Q Consensus 606 ~p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~~~ 647 (1520)
.+++.|-. +=|..-+.|..+|.|++|++++..+
T Consensus 100 ~~~l~diL---------ElP~Lm~~ci~~g~y~eALel~~~~ 132 (338)
T PF04124_consen 100 HDRLLDIL---------ELPQLMDTCIRNGNYSEALELSAHV 132 (338)
T ss_pred HHHHHHHH---------hhHHHHHHHHhcccHhhHHHHHHHH
Confidence 45566555 6677777999999999999998743
No 400
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.85 E-value=8.3e+02 Score=26.73 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHhhCChhhHHHH----hcCcCcc-hHHHHHhhhhccccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1186 ELIYAYAKIDRLGDIEEF----ILMPNVA-NLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1186 ~lv~~yAk~~~l~ele~f----l~~~N~a-~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
.++.||++.|.+.+-.+- |-..+-. +++.++.-++..+.-..-. -.+||+.|.++|.-.+|-++-++
T Consensus 74 rVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~--------L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 74 RVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEF--------LVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHH--------HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHH--------HHHHHHHHHHhcchhhHHHHHHH
Confidence 389999999988765433 2222222 2344554444333222222 34789999999999999999888
Q ss_pred h
Q 000428 1261 A 1261 (1520)
Q Consensus 1261 a 1261 (1520)
|
T Consensus 146 A 146 (161)
T PF09205_consen 146 A 146 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 401
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=27.71 E-value=3.8e+02 Score=34.55 Aligned_cols=264 Identities=17% Similarity=0.260 Sum_probs=139.3
Q ss_pred CCCCCCCCcccccceeeecCeeEEEEecCCCC----eEEEEEcCCCC--CccccccCcccccccCCcceeeeeccCCCCC
Q 000428 17 PSVGINPQFITFTNVTMESDKYICVRETAPQN----SVVIIDMNQPM--QPLRRPITADSALMNPNSRILALKAQLPGTT 90 (1520)
Q Consensus 17 ~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~----~v~Ivdl~~~~--~~~r~pi~AdsAimnP~~~iiAlra~~~~~~ 90 (1520)
+.|++.|...+| +|=.=|-+||.-+=.|=+ +.-+++-.... ++.+.+.+. ..|+++-+
T Consensus 171 sal~~Dp~GaR~--~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--------~~iLvvsg------ 234 (641)
T KOG0772|consen 171 SALAVDPSGARF--VSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--------DQILVVSG------ 234 (641)
T ss_pred EEeeecCCCcee--eeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--------CeEEEEec------
Confidence 457888888888 554557788887755411 33333333222 223333221 35777765
Q ss_pred CCcEEEEehhhhccccccccCCc-------------eeEEEec--c-CCeEEEEecCcEEEEeccCCCCccchh-hcccC
Q 000428 91 QDHLQIFNIELKAKIKSHQMSEQ-------------VVFWKWI--S-PKMLGVVTQTSVYHWSIEGDSEPVKMF-DRTAN 153 (1520)
Q Consensus 91 g~~lQiFnle~k~klks~~~~e~-------------vvfWkWi--s-~~~l~lVT~~aVyHW~i~~~~~P~k~f-~R~~~ 153 (1520)
..+..|||=+-.+.+.-..=+.- +.==.|= + ...|----+.++=.|+++..-.-.+|| -|.+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 35666777655554432211111 1111222 1 112222224567789997766666677 34444
Q ss_pred CCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccc----cchhhc----cceeeecCCCCCCceE
Q 000428 154 LTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQA----LEAHAA----SFAQFKVPGNENPSVL 225 (1520)
Q Consensus 154 L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~----ieghaa----~F~~~~~~g~~~~~~l 225 (1520)
....-...-.-+.|++|. -. |-..|+||.|+....-..+ =.+|-. +=..|.-+|+
T Consensus 315 g~Rv~~tsC~~nrdg~~i-Aa----------gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~------ 377 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLI-AA----------GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN------ 377 (641)
T ss_pred CcccCceeeecCCCcchh-hh----------cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc------
Confidence 444445555668899992 22 3458999999963332222 233322 1222223333
Q ss_pred EEEEEecCCCCcccceEEEEecCCCCCCCCcc-------cccccccCCCCCCCCcceeEEeccccceEEEEe------cc
Q 000428 226 ISFATKSFNAGQVTSKLHVIELGAQPGKPSFT-------KKQADLFFPPDFADDFPVAMQISHKYGLIYVIT------KL 292 (1520)
Q Consensus 226 ~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~-------kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviT------K~ 292 (1520)
.++.|+.. .-|.+-++... ..|-+. ....|.-|.|+ ..+|+--| +-
T Consensus 378 -~LlSRg~D-----~tLKvWDLrq~-kkpL~~~tgL~t~~~~tdc~FSPd--------------~kli~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 378 -YLLSRGFD-----DTLKVWDLRQF-KKPLNVRTGLPTPFPGTDCCFSPD--------------DKLILTGTSAPNGMTA 436 (641)
T ss_pred -hhhhccCC-----Cceeeeecccc-ccchhhhcCCCccCCCCccccCCC--------------ceEEEecccccCCCCC
Confidence 34555544 34888888442 233222 23444455554 34554443 45
Q ss_pred ceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCC
Q 000428 293 GLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRR 334 (1520)
Q Consensus 293 G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~ 334 (1520)
|.|++||-.|-..+|.--||...|--+.=+++-+-|++-.-+
T Consensus 437 g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 437 GTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred ceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 889999999999999888887665444444444444433333
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=27.24 E-value=1.8e+02 Score=36.23 Aligned_cols=106 Identities=10% Similarity=0.199 Sum_probs=61.6
Q ss_pred eeeeecccCCCCCCCCcccccceee--ecCeeEEEEecCCCCeEEEEEcCCCCCccccccCcc---cccccCCcce-eee
Q 000428 9 SMKEVLTLPSVGINPQFITFTNVTM--ESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITAD---SALMNPNSRI-LAL 82 (1520)
Q Consensus 9 ~~~e~~~L~~lGi~~~~i~f~~~t~--eSdk~icvre~~~~~~v~Ivdl~~~~~~~r~pi~Ad---sAimnP~~~i-iAl 82 (1520)
+=.+|.+||+--....++=|.+=-+ .++|.+-.-+-.+..++-.+||.......=..-+.+ .+++.|.++- +-+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEE
Confidence 3356889999877666666655444 477888877755444999999987643211111112 5888898765 468
Q ss_pred eccCCCCCCCcEEEEehhhhccccccccCCcee-EEEec
Q 000428 83 KAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVV-FWKWI 120 (1520)
Q Consensus 83 ra~~~~~~g~~lQiFnle~k~klks~~~~e~vv-fWkWi 120 (1520)
| + ++.|.-.||+|++.=.=++++++-+ |=.|+
T Consensus 99 ~-~-----~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v 131 (386)
T PF14583_consen 99 K-N-----GRSLRRVDLDTLEERVVYEVPDDWKGYGTWV 131 (386)
T ss_dssp E-T-----TTEEEEEETTT--EEEEEE--TTEEEEEEEE
T ss_pred E-C-----CCeEEEEECCcCcEEEEEECCccccccccee
Confidence 8 4 7999999999998878889999966 99997
No 403
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=26.90 E-value=5.6e+02 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=22.8
Q ss_pred eEEEEecCcEEEEeccCC-CCccchhhcc
Q 000428 124 MLGVVTQTSVYHWSIEGD-SEPVKMFDRT 151 (1520)
Q Consensus 124 ~l~lVT~~aVyHW~i~~~-~~P~k~f~R~ 151 (1520)
.|.+=|++-+|-=++++. ..|+|+|+|.
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl~~~~ 43 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKLIGRR 43 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEecCcC
Confidence 477889999998888654 6899999877
No 404
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.83 E-value=64 Score=26.57 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=16.9
Q ss_pred cceEEEEeccceEEEEeccc
Q 000428 283 YGLIYVITKLGLLFVYDLET 302 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~t 302 (1520)
-|.||+.|..|.+|-+|.+|
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 58999999999999999986
No 405
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=26.53 E-value=5.9e+02 Score=33.67 Aligned_cols=276 Identities=17% Similarity=0.311 Sum_probs=162.8
Q ss_pred CCceeeeecccCCCCCCCCcccccceeeecCeeEEEEecCCCCeEEEEEcCCCCCccccccCcccccccCCcceeeeecc
Q 000428 6 APISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNQPMQPLRRPITADSALMNPNSRILALKAQ 85 (1520)
Q Consensus 6 ~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~iiAlra~ 85 (1520)
.||+-++-+-++. -+.+.+.-|+. +.||=-+.-+.+..+-.|=+|.|-| |+ +..||-=.|-+++-+|+--+
T Consensus 529 ~~~sat~~v~~s~-s~r~~s~v~G~----iSKFRH~~Gt~ghks~hi~NLrnln---~~-~PgEsnGfcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 529 KPISATNRVPLSQ-SVRPKSCVVGQ----ISKFRHVDGTQGHKSAHISNLRNLN---TR-LPGESNGFCANNKRVAVPLA 599 (1012)
T ss_pred CCccccccccccc-cccccceeecc----chheeeccCccccchhhhhhhhccc---cc-CCCccCceeeccceEEEEec
Confidence 4444444333222 23444444443 3477555555444476776776543 44 67888888888888888621
Q ss_pred CCCCCCCcEEEEehhhhccccccccCCc-----ee--EEEeccCCeEEEEecCc-EEEEeccC------CCCccchhhcc
Q 000428 86 LPGTTQDHLQIFNIELKAKIKSHQMSEQ-----VV--FWKWISPKMLGVVTQTS-VYHWSIEG------DSEPVKMFDRT 151 (1520)
Q Consensus 86 ~~~~~g~~lQiFnle~k~klks~~~~e~-----vv--fWkWis~~~l~lVT~~a-VyHW~i~~------~~~P~k~f~R~ 151 (1520)
|. |..+-||.|..--||-.-.|+.= |. -|.=.+++-||+-|+.. |=.|.++. ...|.++..-|
T Consensus 600 --g~-gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 600 --GS-GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred --CC-CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 22 78999999999888887777532 22 47778999999999876 55799943 33666665544
Q ss_pred cCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEe
Q 000428 152 ANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATK 231 (1520)
Q Consensus 152 ~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r 231 (1520)
+-+|...|--+-..=++++..+ .-.|-||-+....- ..++.| |--++|.||+.
T Consensus 677 ----~eKI~slRfHPLAadvLa~asy----------d~Ti~lWDl~~~~~-----------~~~l~g--HtdqIf~~AWS 729 (1012)
T KOG1445|consen 677 ----GEKITSLRFHPLAADVLAVASY----------DSTIELWDLANAKL-----------YSRLVG--HTDQIFGIAWS 729 (1012)
T ss_pred ----cceEEEEEecchhhhHhhhhhc----------cceeeeeehhhhhh-----------hheecc--CcCceeEEEEC
Confidence 2478777755544334444433 44555665443320 012222 34467777765
Q ss_pred cCCCCcc-----cceEEEEecCCC-----CCCCCcccccccccCCCCCCCCcceeEEeccccceEEEEecc-----ceEE
Q 000428 232 SFNAGQV-----TSKLHVIELGAQ-----PGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKL-----GLLF 296 (1520)
Q Consensus 232 ~~~~~~~-----~~kL~i~Ei~~~-----~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~-----G~l~ 296 (1520)
. .|.++ -|+|+|-|--+. +|+.+-..+...|-|-=| |-+.++|-+ --|.
T Consensus 730 p-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd---------------gr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 730 P-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD---------------GRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred C-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEec---------------CcEEEEecccccchhhhh
Confidence 3 11110 157999886332 222233345555544322 223333322 2377
Q ss_pred EEeccc--hhhhhhcccCCCceEEeeccCCCCcEEEEcCCCc
Q 000428 297 VYDLET--AAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQ 336 (1520)
Q Consensus 297 lyDl~t--g~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~Gq 336 (1520)
|||.+| +.+||..-+-..|--+--.+...+|++.++-||.
T Consensus 794 ~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 794 MYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred hhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCC
Confidence 899888 5688888877666666666777788999998884
No 406
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.91 E-value=2.2e+02 Score=30.20 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=69.0
Q ss_pred HHHHHHHHhc-CCCCCCC-----HHHHHHHHHhCCcHHHHHHHHHHhhcC--CCC----CCchhhhHHHHhhhccCc-hh
Q 000428 543 VNFALMMSQM-EGGCPVD-----YNTITDLFLQRNLIREATAFLLDVLKP--NLP----EHGFLQTKVLEINLVTFP-NV 609 (1520)
Q Consensus 543 ~~la~~l~~~-e~~~~~d-----v~~vv~~F~~~~l~~e~t~~Ll~~lk~--n~~----e~~~LQt~Lle~nl~~~p-~V 609 (1520)
.+|-..|.+. ++.+|++ |.=+.+.|-+.+.-..+..+|+++++. +.+ +.+-|.-=+.-+....+| .+
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp~~i 85 (125)
T smart00777 6 QAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEPREL 85 (125)
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCHHHH
Confidence 4555555332 3344444 344555555556667788899998863 333 445666666666666778 77
Q ss_pred HHHHhhCCCCCCCChh--HHHHHHHHhCcHHHHHHhcC
Q 000428 610 ADAILANGMFSHYDRP--RIAQLCEKAGLYMRALQHYT 645 (1520)
Q Consensus 610 ad~Il~~~~l~~yD~~--~IA~lCe~agL~e~Ale~Y~ 645 (1520)
=.++..+++-+..--= .-|.+.|..|.|++|-++|.
T Consensus 86 f~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 86 FQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888887766543 45899999999999999985
No 407
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.72 E-value=5.3e+02 Score=33.61 Aligned_cols=91 Identities=18% Similarity=0.326 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHhhcCHHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHH
Q 000428 1223 TLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSE 1302 (1520)
Q Consensus 1223 g~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~ 1302 (1520)
-+-+.|..+|-+.+...+.....+++++-..+++..+.+.+|..-|+. . +-||+. . +--.. =++=.+
T Consensus 242 a~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~----~----YiLArq-~--~~~e~--~dee~~ 308 (881)
T COG5110 242 ALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQC----L----YILARQ-N--LYYEA--SDEEEK 308 (881)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHH----H----HHHHhc-c--CCccc--CCHHHH
Confidence 345778899999999999999999999999999999999999877663 2 233321 1 10111 011224
Q ss_pred HHHhcCCHHHHHHHHHhhcCcccc
Q 000428 1303 YYQNRGYFNELISLMESGLGLERA 1326 (1520)
Q Consensus 1303 ~Ye~~G~f~eLI~Lle~gl~lerA 1326 (1520)
+--.+|+..+-.+++-+-+++.+.
T Consensus 309 dil~Ng~lsdhf~ylgkELnl~~P 332 (881)
T COG5110 309 DILSNGYLSDHFRYLGKELNLDKP 332 (881)
T ss_pred HHhcCCcHHHHHHHHHHHhcCCCC
Confidence 445567777766666666666544
No 408
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.66 E-value=9.4e+02 Score=32.65 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=47.8
Q ss_pred hHHHHHhh--hhhHHHHHHHHHHHhh--CcchHHHHHHHHhhc-----CCHHHHHHHHHhcCCccchHHHHHHHhhcChH
Q 000428 1405 FKDVAVKV--ANVELYYKAVHFYLQE--HPDLINDLLNVLALR-----VDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVS 1475 (1520)
Q Consensus 1405 fk~ii~kv--an~elyYkai~FyL~~--~P~~l~dlL~~l~~r-----lD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~ 1475 (1520)
-++++.|+ .+-.+.-=+|.|+|.+ +|+++...+..+..- =-.+++++++.-.--+.+-..|| -.+|+.
T Consensus 229 va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik~~l~FL---~~~N~t 305 (929)
T KOG2062|consen 229 VADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIKLYLQFL---LRHNNT 305 (929)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHHHHHHHH---HHcCCc
Confidence 44555555 2323333379999954 678888888887721 11457788777555555555555 445554
Q ss_pred HHHHHHHHHhhhhhhhHHHHHhH
Q 000428 1476 AVNEALNEIYVEEEDYERLRESI 1498 (1520)
Q Consensus 1476 ~Vneal~~l~ieeed~~~Lr~sI 1498 (1520)
++.+=++==+++|.|+
T Consensus 306 -------D~~iL~~iK~s~r~sv 321 (929)
T KOG2062|consen 306 -------DLLILEEIKESVRNSV 321 (929)
T ss_pred -------hHHHHHHHHHHHHHhh
Confidence 2333334445556554
No 409
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.47 E-value=1.6e+02 Score=37.91 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=60.9
Q ss_pred cccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEec------CCCCcccceEEEEecCCCCCCCCcccc
Q 000428 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKS------FNAGQVTSKLHVIELGAQPGKPSFTKK 259 (1520)
Q Consensus 186 ~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~------~~~~~~~~kL~i~Ei~~~~~~~~f~kk 259 (1520)
+-+|.+|+||+-.+- .+.++.+..++.++-|.-... ..| +-+|+.++....+. .|.+
T Consensus 77 t~~g~v~~ys~~~g~-----------it~~~st~~h~~~v~~~~~~~~~~ciyS~~----ad~~v~~~~~~~~~-~~~~- 139 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGE-----------ITAKLSTDKHYGNVNEILDAQRLGCIYSVG----ADLKVVYILEKEKV-IIRI- 139 (541)
T ss_pred cCCccEEEEEecCCe-----------EEEEEecCCCCCcceeeecccccCceEecC----CceeEEEEecccce-eeee-
Confidence 348999999998774 345666666665555544221 123 66888888654332 1211
Q ss_pred cccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhh
Q 000428 260 QADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAV 306 (1520)
Q Consensus 260 ~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i 306 (1520)
.....--|-++++|+.=+ -++|-++-|.+||++|+..+
T Consensus 140 -------~~~~~~~~~sl~is~D~~--~l~~as~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 140 -------WKEQKPLVSSLCISPDGK--ILLTASRQIKVLDIETKEVV 177 (541)
T ss_pred -------eccCCCccceEEEcCCCC--EEEeccceEEEEEccCceEE
Confidence 112334567889999833 35678999999999998765
No 410
>PRK05560 DNA gyrase subunit A; Validated
Probab=25.34 E-value=3.6e+02 Score=36.86 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=45.8
Q ss_pred ceeEEecc---ccceEEEEeccceEEEEeccchh-------hhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEee
Q 000428 274 PVAMQISH---KYGLIYVITKLGLLFVYDLETAA-------AVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVN 343 (1520)
Q Consensus 274 Pv~mqvs~---k~g~iyviTK~G~l~lyDl~tg~-------~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~ 343 (1520)
-|+|-..+ ...+++++|+.||+.-.++.+=. ....-+ .+|.+.....-+..+-+++++.+|+++.+.++
T Consensus 592 Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~ 670 (805)
T PRK05560 592 ITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPES 670 (805)
T ss_pred EEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhh
Confidence 35554444 56799999999999988765422 222212 34544333332334459999999999999987
Q ss_pred c
Q 000428 344 E 344 (1520)
Q Consensus 344 ~ 344 (1520)
+
T Consensus 671 e 671 (805)
T PRK05560 671 D 671 (805)
T ss_pred h
Confidence 6
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.25 E-value=51 Score=42.45 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=27.6
Q ss_pred ccceEEEEeccceEEEEeccchhhhhhcccCC
Q 000428 282 KYGLIYVITKLGLLFVYDLETAAAVYRNRISP 313 (1520)
Q Consensus 282 k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~ 313 (1520)
+..++-..||.|++|++|-+||.+|+..++..
T Consensus 314 ~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~ 345 (527)
T TIGR03075 314 PRKLLAHADRNGFFYVLDRTNGKLLSAEPFVD 345 (527)
T ss_pred EEEEEEEeCCCceEEEEECCCCceeccccccC
Confidence 34589999999999999999999998766655
No 412
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=1.3e+03 Score=29.67 Aligned_cols=210 Identities=14% Similarity=0.158 Sum_probs=113.3
Q ss_pred hhcccCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcccCHHHHHHHHHcCCCCCCCCHHHHHHHhcCCCCCCCCCcHHHH
Q 000428 351 VSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQAGQTPPLLQY 430 (1520)
Q Consensus 351 i~~~l~n~~la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~sP~g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Y 430 (1520)
|+..+.|.+||.++-+-+-=..-.++.-.-|.+.|=..+|..+.+. .+.|++| +-|
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq-----------~es~~~~-------------~~~ 420 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ-----------MESIDVT-------------LKW 420 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH-----------HHHHHHH-------------HHH
Confidence 3446788899988766543222222222224555555555555443 3445555 455
Q ss_pred HHHHhhcC-CCChhhhHHHHHHHHhhcchhhHHHHHhhccccc---chhhhhhhhccChhhHHHHHHhcCCCHHHHHHHH
Q 000428 431 FGTLLTRG-KLNAFESLELSRLVVNQNKKNLLENWLAEDKLEC---SEELGDLVKTVDNDLALKIYIKARATPKVVAAFA 506 (1520)
Q Consensus 431 f~~ll~~g-~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~---Se~lGD~~~~~D~~LA~~iY~r~~~~~KvI~~~~ 506 (1520)
++.|+-.- -.+...+.++-|.+-.-||..++-+-++..+-+. -+.||.++.. +-.+-..|+ .+-
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~--------~L~~~k~hp----~tp 488 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM--------LLARDKLHP----LTP 488 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH--------HHhcCCCCC----CCh
Confidence 55555432 4566778888898888999999988777666544 3444443321 001111111 022
Q ss_pred HhccHHHHHHHHHHhCCchhHHHHHHHHhhcCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCcHHHHHHHHHHhhcC
Q 000428 507 ERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKP 586 (1520)
Q Consensus 507 e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~np~~~~~la~~l~~~e~~~~~dv~~vv~~F~~~~l~~e~t~~Ll~~lk~ 586 (1520)
++.|+..+..=|. .||-.--+. .|.| +.+ .+-|+-.++.++-.|...|..|+++++|--+++.
T Consensus 489 ~r~Ql~~~~ak~a-----ad~~e~~e~----~~~R-------~r~-~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 489 EREQLQVAFAKCA-----ADIKEAYES----QPIR-------QRA-QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHh----hHHH-------HHh-ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 2223333322221 122222111 2332 111 2235678999999999999999999999888653
Q ss_pred -CCCCCchhhh---HHHHhhhcc-Cc-hhHHHH
Q 000428 587 -NLPEHGFLQT---KVLEINLVT-FP-NVADAI 613 (1520)
Q Consensus 587 -n~~e~~~LQt---~Lle~nl~~-~p-~Vad~I 613 (1520)
|+---.++=| -|.+-++.. +| |-+..+
T Consensus 552 ~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 552 HNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred CCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 3333334444 555666665 46 544444
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=24.55 E-value=65 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhCChhHHHHHhhc
Q 000428 741 IHFKYIEAAAKTGQIKEVERVTRE 764 (1520)
Q Consensus 741 V~~kyi~A~~k~~q~~EvEr~~re 764 (1520)
++..+|.++++.|++.+++++.++
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHH
Confidence 467889999999999999988764
No 414
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.53 E-value=7.6e+02 Score=33.21 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=89.8
Q ss_pred cccccccCCcceeeeeccCCCCCCCcEEEEehhhhcccccccc-CCceeEEEeccCCeEEEEec---CcEEEEeccCCCC
Q 000428 68 ADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQM-SEQVVFWKWISPKMLGVVTQ---TSVYHWSIEGDSE 143 (1520)
Q Consensus 68 AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~-~e~vvfWkWis~~~l~lVT~---~aVyHW~i~~~~~ 143 (1520)
-|-.-.||+++-+|==++ -+++++||+-+-..+.-|.= ..+|.=-+ +||...=|+++ ..|-.|++.+ +.
T Consensus 538 V~cv~FHPNs~Y~aTGSs-----D~tVRlWDv~~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg~ed~~I~iWDl~~-~~ 610 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSS-----DRTVRLWDVSTGNSVRIFTGHKGPVTALA-FSPCGRYLASGDEDGLIKIWDLAN-GS 610 (707)
T ss_pred cceEEECCcccccccCCC-----CceEEEEEcCCCcEEEEecCCCCceEEEE-EcCCCceEeecccCCcEEEEEcCC-Cc
Confidence 455789999988775433 68899999888776655432 11222111 14444444443 4577899953 56
Q ss_pred ccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccccchhhccceeeec-CCCCCC
Q 000428 144 PVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKV-PGNENP 222 (1520)
Q Consensus 144 P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~-~g~~~~ 222 (1520)
|++-|-.| . .-|.+-..+.|+.=++..| ..-.++||.+.+-.--.+-||+.+=.+.+. ++++..
T Consensus 611 ~v~~l~~H---t-~ti~SlsFS~dg~vLasgg-----------~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (707)
T KOG0263|consen 611 LVKQLKGH---T-GTIYSLSFSRDGNVLASGG-----------ADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS 675 (707)
T ss_pred chhhhhcc---c-CceeEEEEecCCCEEEecC-----------CCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence 77777777 1 2455555566666665555 355789998877766655577766544444 344667
Q ss_pred ceEEEEEEecC
Q 000428 223 SVLISFATKSF 233 (1520)
Q Consensus 223 ~~l~~fa~r~~ 233 (1520)
-.|..|.+|..
T Consensus 676 ~llgs~~tK~t 686 (707)
T KOG0263|consen 676 LLLGSFYTKNT 686 (707)
T ss_pred ceeeeeeecCc
Confidence 77888888853
No 415
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.41 E-value=6.4e+02 Score=29.03 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=69.3
Q ss_pred hhHHHHhcC--cCcchH---HHHHhhhhccccHHHHHHHHHhhc------CH-----HHHHHHHHHhcCHHHHHHHHHHh
Q 000428 1198 GDIEEFILM--PNVANL---QNVGDRLYDDTLYEAAKIIYAFIS------NW-----AKLAVTLVKLKQFQGAVDAARKA 1261 (1520)
Q Consensus 1198 ~ele~fl~~--~N~a~v---~~vgd~~~eeg~YeaAk~~y~~~~------N~-----~kLA~~lv~L~~y~~Ave~AkKa 1261 (1520)
+.++.|+.. .+...+ -..+...++.++++.|..--...- |+ -|||+++...|++++|...-..
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t- 151 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT- 151 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-
Confidence 455667654 233333 447777888888888876655332 33 3669999999999999987654
Q ss_pred CChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhhcCcc
Q 000428 1262 NSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLE 1324 (1520)
Q Consensus 1262 ~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~le 1324 (1520)
...+.|. -+.+...| +.+...|+.+++..=|++++...
T Consensus 152 ~~~~~w~-----------~~~~elrG--------------Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 152 IKEESWA-----------AIVAELRG--------------DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cccccHH-----------HHHHHHhh--------------hHHHHcCchHHHHHHHHHHHHcc
Confidence 2344561 23344445 77889999999999999997553
No 416
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=23.91 E-value=1.6e+02 Score=30.59 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhCChhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHH
Q 000428 1238 WAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLM 1317 (1520)
Q Consensus 1238 ~~kLA~~lv~L~~y~~Ave~AkKa~~~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Ll 1317 (1520)
..+++..+...|++++|+..++++-..+.+. +-+ ...++..|...|+..+++..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------------E~~-------------~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYD------------EEA-------------YRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------------HHH-------------HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------------HHH-------------HHHHHHHHHHCcCHHHHHHHH
Confidence 4457888888999999999999965554441 111 236778999999999999999
Q ss_pred Hhh
Q 000428 1318 ESG 1320 (1520)
Q Consensus 1318 e~g 1320 (1520)
++.
T Consensus 120 ~~~ 122 (146)
T PF03704_consen 120 ERY 122 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 417
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=1.9e+02 Score=37.20 Aligned_cols=74 Identities=26% Similarity=0.494 Sum_probs=0.0
Q ss_pred eccCCeEEEEecCcEEEEeccCCCCc-cchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecc
Q 000428 119 WISPKMLGVVTQTSVYHWSIEGDSEP-VKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVD 197 (1520)
Q Consensus 119 Wis~~~l~lVT~~aVyHW~i~~~~~P-~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~e 197 (1520)
|-+.+.+|+--+..||-| .+.+.+ ..+|+-+ ..+|.++.-+++++=+++-- ..|.+|+|.++
T Consensus 185 Wss~n~laValg~~vylW--~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~-----------~~g~v~iwD~~ 247 (484)
T KOG0305|consen 185 WSSANVLAVALGQSVYLW--SASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGT-----------SDGTVQIWDVK 247 (484)
T ss_pred cccCCeEEEEecceEEEE--ecCCCceEEeEecC----CCceEEEEECCCCCEEEEee-----------cCCeEEEEehh
Q ss_pred cc-cccccch-hhc
Q 000428 198 QQ-RSQALEA-HAA 209 (1520)
Q Consensus 198 r~-~sQ~ieg-haa 209 (1520)
+. ...-+.| |++
T Consensus 248 ~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 248 EQKKTRTLRGSHAS 261 (484)
T ss_pred hccccccccCCcCc
No 418
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.72 E-value=2e+03 Score=29.76 Aligned_cols=67 Identities=25% Similarity=0.206 Sum_probs=51.3
Q ss_pred CCcceeEEeccccceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcE
Q 000428 271 DDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQV 337 (1520)
Q Consensus 271 ~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqV 337 (1520)
.++-++-..-+--..|.+-||.|=+-|||+.|+..+=.-|--...|..-+..+++.|++....+--|
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktV 478 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTV 478 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEE
Confidence 4566666666777789999999999999999999998888556666666666677777766655544
No 419
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=23.61 E-value=1.5e+02 Score=36.05 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=49.6
Q ss_pred cceEEEEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEEeecCcc
Q 000428 283 YGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLATVNEATI 347 (1520)
Q Consensus 283 ~g~iyviTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~~i 347 (1520)
.|-||+-|-.|.+|.+|..||+.+...+....+.+..++--..+.++..+-.|.++.+.-+.-++
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~ 175 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTL 175 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcE
Confidence 78899999999999999999999999998883334444444445566666788888887775444
No 420
>PF12854 PPR_1: PPR repeat
Probab=23.54 E-value=91 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHhCChhHHHHHhhc
Q 000428 738 DPDIHFKYIEAAAKTGQIKEVERVTRE 764 (1520)
Q Consensus 738 dp~V~~kyi~A~~k~~q~~EvEr~~re 764 (1520)
|...+.-+|.++||.|++.|..++.++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455678999999999999999888754
No 421
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.42 E-value=1.2e+03 Score=26.99 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhhh--HH--HHHHHHHHhCChhHHHHHHHHHHh-hccHHHHHHHHHhcCCcchHH-
Q 000428 1079 YEEAFAIFKKFNLNVQAVNVLLDNIRS--IE--RAVEFAFRVEEDAVWSQVAKAQLR-EGLVSDAIESFIRADDATQFL- 1152 (1520)
Q Consensus 1079 ~EEA~~LYkK~~~~~~Ai~vLi~~~~~--~~--~A~e~Aek~~~~eVw~~lgka~l~-~~~v~eAI~~Yika~d~s~~~- 1152 (1520)
.|.--..++++|.+- .+-+++--.+. |. .......--.-+-+|-++.++-.. .-....+++=|+.+.-.+.|.
T Consensus 11 l~~ik~wwkeNGk~l-i~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~ 89 (207)
T COG2976 11 LEAIKDWWKENGKAL-IVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAV 89 (207)
T ss_pred HHHHHHHHHHCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHH
Confidence 334445566666554 44444433222 21 122222111233445555544422 224566777787777677777
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHhhhcCCcchhHHHHHHHHhhCChhhHHHHhcCcCcchHHHHHhhhhccccHHHH
Q 000428 1153 ----DVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAA 1228 (1520)
Q Consensus 1153 ----evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~lv~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaA 1228 (1520)
++.....++++++.-..=|+.+-...+|..+-.-+ -..++...+..|.|++|
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~------------------------~lRLArvq~q~~k~D~A 145 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA------------------------ALRLARVQLQQKKADAA 145 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH------------------------HHHHHHHHHHhhhHHHH
Confidence 44556666666666666666433223332221100 02344455555556666
Q ss_pred HHHHHhhc--CHHHH-----HHHHHHhcCHHHHHHHHHHhC
Q 000428 1229 KIIYAFIS--NWAKL-----AVTLVKLKQFQGAVDAARKAN 1262 (1520)
Q Consensus 1229 k~~y~~~~--N~~kL-----A~~lv~L~~y~~Ave~AkKa~ 1262 (1520)
....+.+. +|..+ +-+|+..|+=++|.....||-
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 55555544 34443 455555566565555555543
No 422
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.39 E-value=1.4e+02 Score=29.11 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHhh--hh--------HHHHHHHHHH
Q 000428 1068 AVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNI--RS--------IERAVEFAFR 1115 (1520)
Q Consensus 1068 ~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~~--~~--------~~~A~e~Aek 1115 (1520)
+-|-.+++.|+++.|...|++ |++.|.+-. +. |++|..+-+|
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~------gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~K 64 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRK------GLRELEEGIAVPVPSAGVGSQWERARRLQQK 64 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHH------HHHHHHHHcCCCCCcccccHHHHHHHHHHHH
Confidence 346666789999999999999 888887732 22 7777666665
No 423
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=23.23 E-value=4.7e+02 Score=30.91 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCC-CCchhhhHHHHhhhccCchhHHHHhhCCCCCCCChhHHHHHHHHhCcHHHHHHhcCCCcchh
Q 000428 573 IREATAFLLDVLKPNLP-EHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTELPDIK 651 (1520)
Q Consensus 573 ~~e~t~~Ll~~lk~n~~-e~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lCe~agL~e~Ale~Y~~~~dik 651 (1520)
+.++-.+..++++.+.- -+--...=+||...-.|+++|..| ||+|+..|.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~I-----------------------fe~glk~f~------ 67 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKI-----------------------FERGLKKFP------ 67 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHH-----------------------HHHHHHHHT------
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-----------------------HHHHHHHCC------
Q ss_pred HHhhccccCChhhHHHHhhcCChHhHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhhHHHHHHHhhhccchhHHHHHhh
Q 000428 652 RVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEGLYFFLGS 731 (1520)
Q Consensus 652 R~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~l~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e~L~~yL~~ 731 (1520)
-+++-.+..++-+++.|+-.|...+.++|
T Consensus 68 --------------------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~------------------------------- 96 (280)
T PF05843_consen 68 --------------------SDPDFWLEYLDFLIKLNDINNARALFERA------------------------------- 96 (280)
T ss_dssp --------------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHH-------------------------------
T ss_pred --------------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHH-------------------------------
Q ss_pred hcccCCCC---hhHHHHHHHHHHhCChhHHHHHhhcCCCCChHhHHHHHhhcCCCCCCCcceeccccCC
Q 000428 732 YLSSSEDP---DIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGF 797 (1520)
Q Consensus 732 ~~~~~~dp---~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~ 797 (1520)
+-....+. .+|-+||+--.+.|.+. ...+|..++.+. +++..++-.+.||+-+
T Consensus 97 i~~l~~~~~~~~iw~~~i~fE~~~Gdl~------------~v~~v~~R~~~~-~~~~~~~~~f~~ry~~ 152 (280)
T PF05843_consen 97 ISSLPKEKQSKKIWKKFIEFESKYGDLE------------SVRKVEKRAEEL-FPEDNSLELFSDRYSF 152 (280)
T ss_dssp CCTSSCHHHCHHHHHHHHHHHHHHS-HH------------HHHHHHHHHHHH-TTTS-HHHHHHCCT-B
T ss_pred HHhcCchhHHHHHHHHHHHHHHHcCCHH------------HHHHHHHHHHHH-hhhhhHHHHHHHHhhc
No 424
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=23.06 E-value=4e+02 Score=29.51 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHhhhhccccHHHHHHHHHhhcCH-----------HHHHHHHHHhcCHHHHHHHHHHhCC
Q 000428 1212 LQNVGDRLYDDTLYEAAKIIYAFISNW-----------AKLAVTLVKLKQFQGAVDAARKANS 1263 (1520)
Q Consensus 1212 v~~vgd~~~eeg~YeaAk~~y~~~~N~-----------~kLA~~lv~L~~y~~Ave~AkKa~~ 1263 (1520)
....|+.+.+-|+++.|...|+.+-.| ..+.++....++|........||.+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367999999999999999999977644 4557888889999998888777653
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=22.56 E-value=76 Score=40.92 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=30.9
Q ss_pred eccccceEEEEeccceEEEEeccchhhhhhcccC
Q 000428 279 ISHKYGLIYVITKLGLLFVYDLETAAAVYRNRIS 312 (1520)
Q Consensus 279 vs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rIs 312 (1520)
+...-|++|+.|+.|.++.||.+||..|++.|+-
T Consensus 468 l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 468 LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 5567789999999999999999999999999984
No 426
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=22.38 E-value=4.8e+02 Score=32.06 Aligned_cols=135 Identities=15% Similarity=0.137 Sum_probs=72.7
Q ss_pred CchhHHHHHHHHH-hCCCCHHHHHHHHHhhhcCCCcccc--chhhhHHHHHHHhhCchHHHHHHHHHhCCChHHHHHHHH
Q 000428 998 SPEQVSAAVKAFM-TADLPHELIELLEKIVLQNSAFSGN--FNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAV 1074 (1520)
Q Consensus 998 ~~~~vs~~Vkaf~-~a~lp~eLi~lLekivl~~~~fs~N--~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia~ 1074 (1520)
+++.+-++++.|. .||...+|.+-...-+..+..++.+ ..|..|.+.-|.+-=..|.. .++....-+|++|.
T Consensus 127 ~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai-----~~~~k~sliAKLa~ 201 (355)
T cd09241 127 TDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQECFWQKAI-----SDGTKDSLIAKLAA 201 (355)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCcchHHHHHHH
Confidence 4678888899998 5788777666543321011122221 24555666555544444432 13455666788886
Q ss_pred H-cCCHHHHHHHHHhcCCcHHHHHHHHHhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhccHHHHHHHHHhcCC
Q 000428 1075 E-AQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADD 1147 (1520)
Q Consensus 1075 e-~~L~EEA~~LYkK~~~~~~Ai~vLi~~~~~~~~A~e~Aek~~~~eVw~~lgka~l~~~~v~eAI~~Yika~d 1147 (1520)
+ ..+|++|.......+... .+|.....+=...=...-+|..|....+.+++-++|..+-.|.+
T Consensus 202 qv~~~Y~~a~~~l~~~~~i~----------~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 202 QVSDYYQEALKYANKSDLIR----------SDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHhcCCccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5 556667777666332222 12332221111111122357777777777777788877766544
No 427
>PHA02598 denA endonuclease II; Provisional
Probab=22.33 E-value=73 Score=34.09 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=38.9
Q ss_pred EEeccceEEEEeccchhhhhhcccCCCceEEeeccCCCCcEEEEcCCCcEEEEE
Q 000428 288 VITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSLGGFYAINRRGQVLLAT 341 (1520)
Q Consensus 288 viTK~G~l~lyDl~tg~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn~~GqVl~v~ 341 (1520)
.+|++||+.+++++-+.+ .||. +-|+.+++ ...|++..-.+|+|+.|.
T Consensus 2 ~~~~~~f~k~~~l~l~~~---~~i~--~~f~~~~~-~~n~VY~~~~~~~viYVG 49 (138)
T PHA02598 2 ILEEYGFIKYAELELDKN---GRID--RSFIKCPN-KKNVIYAIAVDDELVYIG 49 (138)
T ss_pred chHhhCceeEEEEEecCC---CcCc--ccccCCcc-cceEEEEEEeCCeEEEEe
Confidence 368999999999998875 6775 45888884 678898888889998775
No 428
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=22.09 E-value=3.2e+02 Score=33.14 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=59.3
Q ss_pred ccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhccc-CCCceEEeeccCCCCcEEEEcCCCcEEE
Q 000428 261 ADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRI-SPDPIFLTSEASSLGGFYAINRRGQVLL 339 (1520)
Q Consensus 261 ~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~rI-s~~~iF~~~~~~~~~Gi~~Vn~~GqVl~ 339 (1520)
.++..||+ |-=-+|+.|+.-+-+.+-+=.|.+.+||..+... +... ++.||..+|.. +..-++..+-+|+|..
T Consensus 6 ~~l~npP~---d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~~~~~plL~c~F~-d~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 6 FELENPPE---DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKFKHGAPLLDCAFA-DESTIVTGGLDGQVRR 79 (323)
T ss_pred cccCCCCh---hceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhheecCCceeeeecc-CCceEEEeccCceEEE
Confidence 35667766 7777899998888888999999999999998732 2333 34455555544 4445777889999999
Q ss_pred EEeecCc
Q 000428 340 ATVNEAT 346 (1520)
Q Consensus 340 v~i~~~~ 346 (1520)
+-+|..+
T Consensus 80 ~Dln~~~ 86 (323)
T KOG1036|consen 80 YDLNTGN 86 (323)
T ss_pred EEecCCc
Confidence 9988765
No 429
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=22.09 E-value=7.2e+02 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=46.7
Q ss_pred cEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccc
Q 000428 132 SVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQA 203 (1520)
Q Consensus 132 aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ 203 (1520)
.+|.|++.....|..+|+.. .+|..-...+...=+++.|.. .|.+=||-..++..++
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~-----s~v~~~~f~p~~p~ll~gG~y----------~GqV~lWD~~~~~~~~ 279 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESP-----SEVTCLKFCPFDPNLLAGGCY----------NGQVVLWDLRKGSDTP 279 (555)
T ss_pred eEEEEecCCCCCceEEEecC-----CceeEEEeccCCcceEEeecc----------CceEEEEEccCCCCCC
Confidence 69999998889999999887 566677777777778888876 8888999888877764
No 430
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.66 E-value=2.8e+02 Score=35.23 Aligned_cols=129 Identities=15% Similarity=0.233 Sum_probs=80.9
Q ss_pred EEcCCCCCc--c----ccccCcccccccCCcceeeeeccCCCCCCCcEEEEehhhhccccccccCCceeEEEeccCCeEE
Q 000428 53 IDMNQPMQP--L----RRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLG 126 (1520)
Q Consensus 53 vdl~~~~~~--~----r~pi~AdsAimnP~~~iiAlra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~ 126 (1520)
|-|+.|+.. . -.+-.--|...+|...-+|=-|. -+.+.||||.+=..+.++.-+-+..=-.-=.-..||
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-----Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-----DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-----ccceeEeeeccccccceeecCCCcccccccccccee
Confidence 457888752 1 11112334557888877777664 688999999998888888776665544444566789
Q ss_pred EEecCcEEEEeccCCCCccchhhcccCC---CCCeEEEeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccccccc
Q 000428 127 VVTQTSVYHWSIEGDSEPVKMFDRTANL---TNNQIINYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQA 203 (1520)
Q Consensus 127 lVT~~aVyHW~i~~~~~P~k~f~R~~~L---~~~qIi~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ 203 (1520)
+-+++.|-.|.=...+.| -.+.+=+ -+.+|.+.+..+=+ =+.||
T Consensus 350 ~~~G~~v~iw~d~~~~s~---~~~~pYm~H~~~~~V~~l~FcP~E---DvLGI--------------------------- 396 (545)
T KOG1272|consen 350 LSYGDHVQIWKDALKGSG---HGETPYMNHRCGGPVEDLRFCPYE---DVLGI--------------------------- 396 (545)
T ss_pred eecCCeeeeehhhhcCCC---CCCcchhhhccCcccccceeccHH---Heeec---------------------------
Confidence 999999999943222222 1111111 12255555554432 24454
Q ss_pred cchhhccceeeecCCCCC
Q 000428 204 LEAHAASFAQFKVPGNEN 221 (1520)
Q Consensus 204 ieghaa~F~~~~~~g~~~ 221 (1520)
||++.|.++-+||.-+
T Consensus 397 --GH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 397 --GHAGGITSILVPGSGE 412 (545)
T ss_pred --cccCCceeEeccCCCC
Confidence 5999999999999733
No 431
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=21.62 E-value=6.9e+02 Score=29.93 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=57.2
Q ss_pred ccccccHHHHHHHHHhcCCHHHHHHHHHhhcCccccccchhHHHHHH---HhccChhhhHHHHHHHHHhh---chHHHHH
Q 000428 1291 IVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVL---YARYRYEKLMEHIKLFSTRL---NIPKLIR 1364 (1520)
Q Consensus 1291 i~~~d~l~elv~~Ye~~G~f~eLI~Lle~gl~lerAh~~~fTeLail---yAky~pekLmehlk~y~~~i---Ni~K~i~ 1364 (1520)
++..+.+++++++..+.++.+.+-.+.++..+...--..+..+|..- ..++.|+...+.+..|..++ |+-.++|
T Consensus 28 L~~~~s~~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~di~Nik~ilR 107 (343)
T TIGR02923 28 LLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLIEHALDANLAKTYEKLFRISPGASRDLIRLYLKKWDVWNIKTLIR 107 (343)
T ss_pred HHhCCCHHHHHHHhcCCChHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455688999999988888877666543221111111111121111 22345677667777776666 6666677
Q ss_pred HHHhhcchHHHHHHHHhhccHHHH-HHHHHh
Q 000428 1365 ACDEQQHWKELTYLYIQYDEFDNA-ATTIMN 1394 (1520)
Q Consensus 1365 ~ce~~~lW~E~vfLy~~~~e~d~A-~~~mi~ 1394 (1520)
+-.......+..-++...|.++.. +..|++
T Consensus 108 ~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~ 138 (343)
T TIGR02923 108 AKYANASAEEVEDLLIPAGEFLEKRIKELAE 138 (343)
T ss_pred HHHcCCCHHHHHHHhccccccCHHHHHHHHc
Confidence 765444555554455556666542 455553
No 432
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.48 E-value=5.3e+02 Score=35.32 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=45.1
Q ss_pred CcceeEEe-c--cccceEEEEeccceEEEEeccchhhhhh-------cccCCCce-EEeeccCCCCcEEEEcCCCcEEEE
Q 000428 272 DFPVAMQI-S--HKYGLIYVITKLGLLFVYDLETAAAVYR-------NRISPDPI-FLTSEASSLGGFYAINRRGQVLLA 340 (1520)
Q Consensus 272 DFPv~mqv-s--~k~g~iyviTK~G~l~lyDl~tg~~i~~-------~rIs~~~i-F~~~~~~~~~Gi~~Vn~~GqVl~v 340 (1520)
.=-|++-. + +....++++|+.||+.-.++.+=...-+ -+= +|.+ ++... +.+.-+++++.+|+++.+
T Consensus 588 E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~-~~~d~lll~Ts~Gr~~r~ 665 (800)
T TIGR01063 588 ERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLT-SGDDEVMLGSKNGKAVRF 665 (800)
T ss_pred CeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEe-CCCCEEEEEECCCcEEEE
Confidence 33455543 2 3446899999999999988765222111 111 3433 33332 334559999999999999
Q ss_pred Eeec
Q 000428 341 TVNE 344 (1520)
Q Consensus 341 ~i~~ 344 (1520)
.+++
T Consensus 666 ~v~e 669 (800)
T TIGR01063 666 PEED 669 (800)
T ss_pred Ehhh
Confidence 9886
No 433
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=21.16 E-value=2.2e+02 Score=36.99 Aligned_cols=140 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHhhcCccccccchhHHHHHHHhccC---------------hhhhHHHHHHHHHhhchHHHHHHHHhhcchHHHHHHH
Q 000428 1315 SLMESGLGLERAHMGIFTELGVLYARYR---------------YEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLY 1379 (1520)
Q Consensus 1315 ~Lle~gl~lerAh~~~fTeLailyAky~---------------pekLmehlk~y~~~iNi~K~i~~ce~~~lW~E~vfLy 1379 (1520)
.|++.+.--..-|++||-+..-.|.-++ -.||-+|||+|+.-.
T Consensus 95 ~L~~~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~Iadv~qKlAPFLKmYseY~---------------------- 152 (623)
T KOG4424|consen 95 RLLEEASIPADVITGLFGNISSIHNFHGQFLLPELEKRIIADVFQKLAPFLKMYSEYA---------------------- 152 (623)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHhhhHHHHHHHHH----------------------
Q ss_pred HhhccHHHHH---HHHHhcCchhhcchhhHHHHHhhhhhHHHHHHHHHHHhhCcchHHHHHHHHhhcCCHHHHHHHHHhc
Q 000428 1380 IQYDEFDNAA---TTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKA 1456 (1520)
Q Consensus 1380 ~~~~e~d~A~---~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~l~~rlD~~rvV~~~~k~ 1456 (1520)
.+||+|+ .++++. ..+|++++.++..-+ .|=..+|-|-.+.=.=|--
T Consensus 153 ---knydrA~~L~~~lt~r------sp~F~~vl~~Iek~~---------------------~cg~l~LqhhMiePVQRIP 202 (623)
T KOG4424|consen 153 ---KNYDRALKLFQTLTSR------SPQFRKVVEEIEKQP---------------------ECGGLKLQHHMIEPVQRVP 202 (623)
T ss_pred ---hcchhHHHHHHHHHhh------ChHHHHHHHHHhhch---------------------hcCCccchhheechhhhhh
Q ss_pred CCccchHHHHHHHhhcChHHHHHHHHHHhhhhhhhHHHHHhHHhhhCCChH
Q 000428 1457 GHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQI 1507 (1520)
Q Consensus 1457 ~~ipLik~yL~~vq~~n~~~Vneal~~l~ieeed~~~Lr~sId~y~nfd~~ 1507 (1520)
+..-|+++||+- .+.-.+.-++|--.|=.=.-.-..--..|.+++++.++
T Consensus 203 RYeLLLk~yl~~-lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kL 252 (623)
T KOG4424|consen 203 RYELLLQDYLLY-LPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKL 252 (623)
T ss_pred HHHHHHHHHHHh-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.07 E-value=1.3e+02 Score=29.07 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHh
Q 000428 1070 GEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDN 1102 (1520)
Q Consensus 1070 A~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~~ 1102 (1520)
|--+.+.|.|+||+..|++ |++.|+..
T Consensus 13 Ave~D~~g~y~eA~~~Y~~------aie~l~~~ 39 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKE------AAQLLIYA 39 (76)
T ss_pred HHHHHHccCHHHHHHHHHH------HHHHHHHH
Confidence 3444469999999999999 88888763
No 435
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.78 E-value=3.6e+02 Score=33.72 Aligned_cols=76 Identities=25% Similarity=0.245 Sum_probs=49.1
Q ss_pred ceEEEEecCCCCC---CCCcccccccccCCCCCCCCcceeEEeccccceEEEEeccceEEEEeccchhhhhhc-------
Q 000428 240 SKLHVIELGAQPG---KPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRN------- 309 (1520)
Q Consensus 240 ~kL~i~Ei~~~~~---~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~g~iyviTK~G~l~lyDl~tg~~i~~~------- 309 (1520)
|+|+|+|..+... .+.=.+-.-|+-|.||- .+|--||+- -..|||..||.++-+.
T Consensus 166 g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg--------------k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~ 230 (398)
T KOG0771|consen 166 GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG--------------KFLASIGAD-SARVWSVNTGAALARKTPFSKDE 230 (398)
T ss_pred ceEEEEecCcchhhhhhHhhcCccccceeCCCC--------------cEEEEecCC-ceEEEEeccCchhhhcCCcccch
Confidence 7899999644211 11122345578787772 245556666 8899999999666544
Q ss_pred -----ccCC----CceEEeeccCCCCcEEE
Q 000428 310 -----RISP----DPIFLTSEASSLGGFYA 330 (1520)
Q Consensus 310 -----rIs~----~~iF~~~~~~~~~Gi~~ 330 (1520)
|++. +++++++....++|+..
T Consensus 231 ~~~~cRF~~d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 231 MFSSCRFSVDNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred hhhhceecccCCCceEEEEEecCCCCceeE
Confidence 4444 45788887777777665
No 436
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=20.76 E-value=2.4e+02 Score=36.02 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=53.4
Q ss_pred HHHHHHhcCHHHHHHHHHHhCC-hhhHHHHHHHHhcchhhhHHHhhccccccccccHHHHHHHHHhcCCHHHHHHHHHhh
Q 000428 1242 AVTLVKLKQFQGAVDAARKANS-AKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESG 1320 (1520)
Q Consensus 1242 A~~lv~L~~y~~Ave~AkKa~~-~k~wk~v~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~eLI~Lle~g 1320 (1520)
|+++...|+.++|++...++-. ...|+++..-|+ |++|+- +.-.++|++|...+.+-
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~----~El~w~------------------~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY----FELAWC------------------HMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH----HHHHHH------------------HHHHchHHHHHHHHHHH
Confidence 8999999999999999998774 568999999999 888864 45567777777777766
Q ss_pred cCccccccchhH
Q 000428 1321 LGLERAHMGIFT 1332 (1520)
Q Consensus 1321 l~lerAh~~~fT 1332 (1520)
...++=-.++|+
T Consensus 332 ~~~s~WSka~Y~ 343 (468)
T PF10300_consen 332 LKESKWSKAFYA 343 (468)
T ss_pred HhccccHHHHHH
Confidence 654443344444
No 437
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.46 E-value=4.3e+02 Score=33.99 Aligned_cols=111 Identities=19% Similarity=0.371 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCCccccccCcc---------cccccCCccee-eeeccCCCCCCCcEEEEehhhhccccccccCCceeEEE
Q 000428 49 SVVIIDMNQPMQPLRRPITAD---------SALMNPNSRIL-ALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWK 118 (1520)
Q Consensus 49 ~v~Ivdl~~~~~~~r~pi~Ad---------sAimnP~~~ii-Alra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWk 118 (1520)
+|.|-||+.|.- | |+|+ +-.|+|..|+. |.= + ...+-||||-.+.++..++=-.|=+=-=
T Consensus 488 tlsiWDLAapTp---r-ikaeltssapaCyALa~spDakvcFscc-s-----dGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 488 TLSIWDLAAPTP---R-IKAELTSSAPACYALAISPDAKVCFSCC-S-----DGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred eeeeeeccCCCc---c-hhhhcCCcchhhhhhhcCCccceeeeec-c-----CCcEEEEEcccceeeecccCCCCCceeE
Confidence 899999997742 2 5544 23488988763 222 2 5789999999999998887644421111
Q ss_pred eccCCeEEEEe---cCcEEEEeccCCCCccc-hhhcccCCCCCeEEEeeeCCCCCeEEEEecc
Q 000428 119 WISPKMLGVVT---QTSVYHWSIEGDSEPVK-MFDRTANLTNNQIINYKCDPTEKWLVLIGIA 177 (1520)
Q Consensus 119 Wis~~~l~lVT---~~aVyHW~i~~~~~P~k-~f~R~~~L~~~qIi~Y~~~~~~kW~~l~Gi~ 177 (1520)
=|+++---|=| ++.|=-|++-...+|.+ =| .+||.+...++++.|++ +|..
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrqlqqhdF-------~SQIfSLg~cP~~dWla-vGMe 612 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-------SSQIFSLGYCPTGDWLA-VGME 612 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhhhhhhh-------hhhheecccCCCcccee-eecc
Confidence 12222111222 34566666632222221 11 27999999999999986 4665
No 438
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=20.34 E-value=1.6e+03 Score=27.43 Aligned_cols=179 Identities=12% Similarity=0.226 Sum_probs=92.2
Q ss_pred cchhhcccCCC-C--CeEE-EeeeCCCCCeEEEEeccCCCCCCCccccceEEEeecccc--cccccchhhccceeeecCC
Q 000428 145 VKMFDRTANLT-N--NQII-NYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQ--RSQALEAHAASFAQFKVPG 218 (1520)
Q Consensus 145 ~k~f~R~~~L~-~--~qIi-~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~--~sQ~ieghaa~F~~~~~~g 218 (1520)
..+||=.. |+ + +-.+ .+..++|++++++ |++ ..|.=.-.+..+.++.| +...|++-.+.+..+.
T Consensus 109 evllD~n~-l~~~~~~~~~~~~~~Spdg~~la~-~~s-----~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~--- 178 (414)
T PF02897_consen 109 EVLLDPNE-LAKDGGYVSLGGFSVSPDGKRLAY-SLS-----DGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWS--- 178 (414)
T ss_dssp EEEEEGGG-GSTTSS-EEEEEEEETTTSSEEEE-EEE-----ETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEEC---
T ss_pred EEEEcchH-hhccCceEEeeeeeECCCCCEEEE-Eec-----CCCCceEEEEEEECCCCcCcCCcccccccceEEEe---
Confidence 45666543 43 2 3444 8999999998865 444 22333445777777766 2333444333322332
Q ss_pred CCCCceEEEEEEecCCCC----cccceEEEEecCCCCCCCCcccccccccCCCCCCCCc-ceeEEeccccceEEEEeccc
Q 000428 219 NENPSVLISFATKSFNAG----QVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDF-PVAMQISHKYGLIYVITKLG 293 (1520)
Q Consensus 219 ~~~~~~l~~fa~r~~~~~----~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp~~~~DF-Pv~mqvs~k~g~iyviTK~G 293 (1520)
..++.|.+........ ....++....+|++... ..-||=-+ .++| -+++..|..-..|++-...|
T Consensus 179 --~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~------d~lvfe~~--~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 179 --DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE------DELVFEEP--DEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp --TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-------EEEEC-T--TCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred --CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh------CeeEEeec--CCCcEEEEEEecCcccEEEEEEEcc
Confidence 2223444444333211 00157888888875322 12232222 2456 67777787766666543333
Q ss_pred ----eEEEEeccch------hhhhhcccCCCceEEeeccCCCCcEEEEc----CCCcEEEEEeecCc
Q 000428 294 ----LLFVYDLETA------AAVYRNRISPDPIFLTSEASSLGGFYAIN----RRGQVLLATVNEAT 346 (1520)
Q Consensus 294 ----~l~lyDl~tg------~~i~~~rIs~~~iF~~~~~~~~~Gi~~Vn----~~GqVl~v~i~~~~ 346 (1520)
-+++.|+.++ ......|..+..-++... ++.++.++ .+|+|+.+.++...
T Consensus 249 ~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 249 TSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp SSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred ccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccc
Confidence 4899999986 233344444444444433 33455444 45788888777554
No 439
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.31 E-value=9.7e+02 Score=28.72 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=96.1
Q ss_pred eEEEEecCcEEEEeccCCCCccchhhcccCCCCCeEEEeeeCCCCCe--EEEEeccCCCCCCCccccceEEEeecccccc
Q 000428 124 MLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQIINYKCDPTEKW--LVLIGIAPGSAERPQLVKGNMQLFSVDQQRS 201 (1520)
Q Consensus 124 ~l~lVT~~aVyHW~i~~~~~P~k~f~R~~~L~~~qIi~Y~~~~~~kW--~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~s 201 (1520)
.++-..+.++=-|+..-.+.|...|.-|.. .| |.+|-..+| ..|++ | -.|.+-|++..|+.|
T Consensus 76 ~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~----EV--~Svdwn~~~r~~~lts-S---------WD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMPSKPIHKFKEHKR----EV--YSVDWNTVRRRIFLTS-S---------WDGTIKLWDPNRPNS 139 (311)
T ss_pred EEEEecCceEEEeccCCCCcchhHHHhhhh----he--EEeccccccceeEEee-c---------cCCceEeecCCCCcc
Confidence 345556788999997778889999988853 34 334444444 55666 4 689999999999865
Q ss_pred -cccchhhccceeeecCCCCCCceEEEEEEecCCCCcccceEEEEecCCCCCCCCcccccccccCCC-CC-CCCcceeEE
Q 000428 202 -QALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPP-DF-ADDFPVAMQ 278 (1520)
Q Consensus 202 -Q~ieghaa~F~~~~~~g~~~~~~l~~fa~r~~~~~~~~~kL~i~Ei~~~~~~~~f~kk~~d~~fpp-~~-~~DFPv~mq 278 (1520)
|-.-||.-|--+.+ -+|+--+||+-+.- . +-|++-++..+ |. ... |+.+. |+ ..||
T Consensus 140 v~Tf~gh~~~Iy~a~--~sp~~~nlfas~Sg--d-----~~l~lwdvr~~-gk-----~~~-i~ah~~Eil~cdw----- 198 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAA--FSPHIPNLFASASG--D-----GTLRLWDVRSP-GK-----FMS-IEAHNSEILCCDW----- 198 (311)
T ss_pred eEeecCCccEEEEEe--cCCCCCCeEEEccC--C-----ceEEEEEecCC-Cc-----eeE-EEeccceeEeecc-----
Confidence 77899999985554 46778888887743 2 56888888554 32 222 44443 22 3344
Q ss_pred ecc-ccceEEEEeccceEEEEeccch
Q 000428 279 ISH-KYGLIYVITKLGLLFVYDLETA 303 (1520)
Q Consensus 279 vs~-k~g~iyviTK~G~l~lyDl~tg 303 (1520)
|+ .+.+++--.-.+.|..||+..-
T Consensus 199 -~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 199 -SKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred -cccCCcEEEecCCCceEEEEehhhc
Confidence 32 3447777777899999999763
No 440
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=20.22 E-value=7.9e+02 Score=32.28 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCCCChhhhHHHHHHHHhhcchhhHHHHHhhcccccchhhhhhhhc
Q 000428 403 GLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKT 482 (1520)
Q Consensus 403 g~LRt~~Ti~rfk~~~~~~Gq~~pLL~Yf~~ll~~g~ln~~eslEL~r~vl~qnr~~LlekWL~enkL~~Se~lGD~~~~ 482 (1520)
+.|+-|.|++.|.+.++ ..|+|-+++..+- .=..-+.+.++|=.
T Consensus 348 e~l~i~~t~~~F~~~~K--------------------------~~Lik~Lwk~h~~----------~p~alrliA~Lcle 391 (551)
T PF10493_consen 348 EELNIPYTIESFESCDK--------------------------EGLIKSLWKNHSH----------NPQALRLIAELCLE 391 (551)
T ss_pred HhcCCCccHHHHhcCCH--------------------------HHHHHHHHhcCCC----------CchHHHHHHHHHHh
Q ss_pred cChhhHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHHHhCCchh----------HHHHHHHHhhc-----CchhHHHHHH
Q 000428 483 VDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPD----------YLFLLQTILRT-----DPQGAVNFAL 547 (1520)
Q Consensus 483 ~D~~LA~~iY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~d----------~~~lL~~~~~~-----np~~~~~la~ 547 (1520)
||....... +.+.+-+.+.+|+....+.+....-.|. |..+++.-+.. +|++-..+.+
T Consensus 392 y~i~dpqlW-------n~iL~~l~~~~mi~~L~~lL~~is~~~~l~~i~~~~~aW~~vi~~Pf~~a~~~~s~~q~~~~~~ 464 (551)
T PF10493_consen 392 YDIYDPQLW-------NGILQQLLGFNMISYLRKLLDAISSIPSLWQIPGFSMAWQRVIQAPFSSASCPPSPDQNEQCCK 464 (551)
T ss_pred cCCCCHHHH-------HHHHHHHHHhhHHHHHHHHHHHhcCChhhhcCccHHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q ss_pred HHHhcCCCC---CCCHHHHHHHHHhCCcHHHHHHHHHHhhcCCCCCCchhhhHH
Q 000428 548 MMSQMEGGC---PVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKV 598 (1520)
Q Consensus 548 ~l~~~e~~~---~~dv~~vv~~F~~~~l~~e~t~~Ll~~lk~n~~e~~~LQt~L 598 (1520)
+++---+-| .+|+..+++.+++.+++.-+.+.|+-+. +.......+|+++
T Consensus 465 ~l~~l~~CPv~~~ldl~~ia~~~~~~~~~~~Al~~Ll~~~-~~~~~~~~i~~~~ 517 (551)
T PF10493_consen 465 SLVLLLKCPVLHDLDLIGIAKQCIQLKLPAFALACLLLFP-QSEKRKQQIQKLL 517 (551)
T ss_pred HHHHHHcCCccccccHHHHHHHHHHcCCHHHHHHHHhhCc-cchhHHHHHHHHH
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.05 E-value=1.5e+02 Score=27.50 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHH
Q 000428 1068 AVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLD 1101 (1520)
Q Consensus 1068 ~IA~ia~e~~L~EEA~~LYkK~~~~~~Ai~vLi~ 1101 (1520)
.-|.-+.+.|.+++|+..|++ |+..|+.
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~------ai~~l~~ 37 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKE------AIEYLMQ 37 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH------HHHHHHH
Confidence 446677789999999999998 8888776
No 442
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=20.04 E-value=3.6e+02 Score=34.42 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=88.1
Q ss_pred cccceEEEeecccccccccchhhccceeeecCCCCCCceEEEEEEec------CCCCcccceEEEEecCCCCCCCCccc-
Q 000428 186 LVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKS------FNAGQVTSKLHVIELGAQPGKPSFTK- 258 (1520)
Q Consensus 186 ~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~fa~r~------~~~~~~~~kL~i~Ei~~~~~~~~f~k- 258 (1520)
-+.|.=||||++-.= .=+--| ..|.++-.-.......=++|..-+ |.. -+|.=+|||-+ .++|
T Consensus 243 D~eG~GnlYSvdldG-kDlrrH-TnFtdYY~R~~nsDGkrIvFq~~GdIylydP~t----d~lekldI~lp----l~rk~ 312 (668)
T COG4946 243 DHEGVGNLYSVDLDG-KDLRRH-TNFTDYYPRNANSDGKRIVFQNAGDIYLYDPET----DSLEKLDIGLP----LDRKK 312 (668)
T ss_pred cccCccceEEeccCC-chhhhc-CCchhccccccCCCCcEEEEecCCcEEEeCCCc----CcceeeecCCc----ccccc
Confidence 467888999987321 111122 245555443333444444554332 332 45666777632 2322
Q ss_pred ccccccCCCCCCCCcce-----------------------eEEeccccceEE-----------EEeccc-eEEEEeccch
Q 000428 259 KQADLFFPPDFADDFPV-----------------------AMQISHKYGLIY-----------VITKLG-LLFVYDLETA 303 (1520)
Q Consensus 259 k~~d~~fpp~~~~DFPv-----------------------~mqvs~k~g~iy-----------viTK~G-~l~lyDl~tg 303 (1520)
+.-.+.-|..+.+||-+ ++||.++-||=| +-|+-| .|-+||.+||
T Consensus 313 k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 313 KQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred ccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc
Confidence 22222233344455533 467778777755 568888 9999999999
Q ss_pred hhhhhcccCCC--ceEEeeccCCCCcEEEEcCCCcEEEEEeecCcc
Q 000428 304 AAVYRNRISPD--PIFLTSEASSLGGFYAINRRGQVLLATVNEATI 347 (1520)
Q Consensus 304 ~~i~~~rIs~~--~iF~~~~~~~~~Gi~~Vn~~GqVl~v~i~~~~i 347 (1520)
. +.||-.+ .||....+.++.=+++-|.++++..|.||..+.
T Consensus 393 e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 393 E---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred e---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 7 3455443 477766655555578888999999999887763
No 443
>PF12854 PPR_1: PPR repeat
Probab=20.01 E-value=1.4e+02 Score=24.03 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHhcCHHHHHHHHHH
Q 000428 1236 SNWAKLAVTLVKLKQFQGAVDAARK 1260 (1520)
Q Consensus 1236 ~N~~kLA~~lv~L~~y~~Ave~AkK 1260 (1520)
..|..|...||+.|+.++|.++..+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3578889999999999999988765
Done!