Query 000428
Match_columns 1520
No_of_seqs 263 out of 438
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 17:10:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000428.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_206-210//hhsearch_pdb/000428hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 1.0 1 1 4121.1 150.0 1503 2-1519 1-1505(1630)
2 1bpo_A Protein (clathrin); cla 1.0 1 1 1536.3 48.3 492 2-507 1-494 (494)
3 3lvg_A Clathrin heavy chain 1; 1.0 1 1 1246.4 -21.1 439 1081-1519 16-454 (624)
4 2xzh_A Clathrin heavy chain 1; 1.0 1 1 1142.9 34.4 362 2-377 2-365 (365)
5 1b89_A Protein (clathrin heavy 1.0 1 1 971.0 31.7 432 1088-1519 1-432 (449)
6 1xi4_A Clathrin heavy chain; a 1.0 1 1 803.2 44.3 679 427-1168 858-1583(1630)
7 3lvg_A Clathrin heavy chain 1; 1.0 1 1 668.8 -14.2 468 638-1165 15-529 (624)
8 1b89_A Protein (clathrin heavy 1.0 1 1 411.1 9.2 409 645-1093 14-449 (449)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 110.5 30.9 57 1118-1174 66-127 (388)
10 2xpi_A Anaphase-promoting comp 1.0 1 1 109.5 34.6 198 1117-1339 371-595 (597)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=4121.12 Aligned_cols=1503 Identities=57% Similarity=0.960 Sum_probs=1494.1
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 77899811465022477998997421141111067159998567998-29999869999965444673300026875266
Q 000428 2 AAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQN-SVVIIDMNQPMQPLRRPITADSALMNPNSRIL 80 (1520)
Q Consensus 2 ~~~~~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~-~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~ii 80 (1520)
|+++.||+|+|+++|+++||+|++|+|+++||||||||||||++|++ ||+||||.||++|+||||+||||||||+++||
T Consensus 1 m~~~~pi~~~e~~~L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~ii 80 (1630)
T 1xi4_A 1 MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVI 80 (1630)
T ss_pred CCCCCCEEHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCEE
T ss_conf 99899820101301652599931166652122058358997327998669999889988762255463220017776569
Q ss_pred EEECCCCCCCCCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCHHHCCCCCCCCEEE
Q ss_conf 65024888889808898301001212102577515877415884899823817998336998860112135687798189
Q 000428 81 ALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQII 160 (1520)
Q Consensus 81 Alra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~s~P~k~f~R~~~L~~~qIi 160 (1520)
|||+ |++|||||||+|+|||||+|+|+||||||||++||||||+|+||||+++|+++|+||||||++|+|||||
T Consensus 81 ALra------g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIi 154 (1630)
T 1xi4_A 81 ALKA------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (1630)
T ss_pred EEEC------CCEEEEEEHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCEEEEECCCCCCCCHHHHHCCHHCCCCEEE
T ss_conf 9955------9847996058864432302688726898548872588718757996268987628887400112567037
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 84568998847888226898888764220278742122353201001000113303899998219999982388885432
Q 000428 161 NYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTS 240 (1520)
Q Consensus 161 ~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~f~~r~~~~~~~~~ 240 (1520)
|||+|+++|||+|+||+ +++|+|+|+|||||+||++||+||||||||++++++|+++|++||||++|+++| +
T Consensus 155 nY~~d~~~kW~~l~gi~----~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g----~ 226 (1630)
T 1xi4_A 155 NYRTDAKQKWLLLTGIS----AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG----G 226 (1630)
T ss_pred EEEECCCCCEEEEEEEC----CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEECCCCCCCCCEEEEEEEECCCC----C
T ss_conf 75557877758898532----678866521465322434331556767555200148999883179999845877----4
Q ss_pred EEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCEEEE
Q ss_conf 1899963799-999986312211138999889963158740344549999224148998355301665614689965783
Q 000428 241 KLHVIELGAQ-PGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLT 319 (1520)
Q Consensus 241 kL~i~Ei~~~-~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~giiyviTK~G~i~lyDletg~~i~~~rIs~~~iF~~ 319 (1520)
||||||||++ +|+|+|+||++|+|||||+++||||+||||+|||+||||||+||+|+||++|||||||||||+||||+|
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (1630)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHCCCCCCCEEEE
T ss_conf 68899657876689987566212337941145760378851556879999647527998435430146414668835884
Q ss_pred ECCCCCCCEEEECCCCCEEEEEEECCCCCCCHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 01379981899918982999984058522010001689999999999269998368999999998700599999999980
Q 000428 320 SEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAE 399 (1520)
Q Consensus 320 ~~~~~~~Gi~~vn~~GqVl~v~i~~~~ivpyi~~~l~n~~la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~ 399 (1520)
|++++++||+||||+|||++|+||+++|||||+++|+|++||+++|+|+||||||+||++|||++|++|+|++||++||+
T Consensus 307 ~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~ 386 (1630)
T 1xi4_A 307 APHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (1630)
T ss_pred CCCCCCCCEEEECCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 36788885699737865999997511102567645488899999997369987335799999999976789999999982
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99987889988998764999999988279999998606888756569989999950041457977731656410664233
Q 000428 400 SPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDL 479 (1520)
Q Consensus 400 sp~g~LRt~~Ti~rfk~~~~~~gq~~pLL~Yf~~ll~~g~ln~~eslEL~k~vl~qnr~~LlekWL~enkL~~Se~LGD~ 479 (1520)
||+|+||||+||+|||++|++|||+||||+||++||++|+||++||+||+|||++|||++|++||++||||+|||+|||+
T Consensus 387 sp~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDl 466 (1630)
T 1xi4_A 387 APKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDL 466 (1630)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 95443568999999975888999988799999999825899689999998999971649999999971773055877889
Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21049125999999609988999999971249999999998099124999999874119014999999987248999989
Q 000428 480 VKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVD 559 (1520)
Q Consensus 480 i~~~D~~LA~~vY~r~~~~~KvI~~~~e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~nP~~~~~la~~l~~~e~~~~~d 559 (1520)
++++|+.||++||.||+||.|||+|++++|||+++++|++++||+|||+++|++++|.||+++++||.+|+++++ |++|
T Consensus 467 v~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~pDy~~ll~~~~~~~P~~~~~fa~~L~~~~~-p~~d 545 (1630)
T 1xi4_A 467 VKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEE-PLAD 545 (1630)
T ss_pred HHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCCC
T ss_conf 873386999999984599489999999968887999998633999459999999852296889999999861899-8658
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 78999999938948999999999505999887402467999631157114788851898898994689999998080899
Q 000428 560 YNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYMR 639 (1520)
Q Consensus 560 v~~vV~~Fm~~~l~~Elt~lLl~il~~n~~~~~~LQt~Lle~nl~~~p~Vad~Il~~~~l~~yD~~~IA~lce~agL~e~ 639 (1520)
+++|||+|+++|++||+|+||+|++|+|+|++|+|||||||+||+++|||||+||+|+|||||||++||+|||+||||||
T Consensus 546 ~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qr 625 (1630)
T 1xi4_A 546 ITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQR 625 (1630)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH
T ss_conf 99999999856859999999999982898112147688998751146148999985486550368999999997680999
Q ss_pred HHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98722798521377640266895569999500796869999999997300201799999999998632047899998630
Q 000428 640 ALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQF 719 (1520)
Q Consensus 640 Ale~Y~~~~dikR~~~~t~~~~~~~L~~~~~~l~~~~~~e~l~~ll~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~ 719 (1520)
|||||+|+.|||||++||+.+||+||++|||+|++++|++||++||++|+|||+|+|||+|+||++++|+.+||++||++
T Consensus 626 ale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~ 705 (1630)
T 1xi4_A 626 ALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESF 705 (1630)
T ss_pred HHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99864788887888625676887999999845998899999999999868631022143798887632879999999972
Q ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCHH
Q ss_conf 55123888785200347997369999999998099369999840378889376898886227998778201033448802
Q 000428 720 KSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVP 799 (1520)
Q Consensus 720 ~~~e~L~~yL~~~~~~~~d~~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~ 799 (1520)
++||||||||||+||+|+||+||||||+||+|+||++||||||||||+||||+||||||++||+||+|||+|||||||||
T Consensus 706 ~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~ 785 (1630)
T 1xi4_A 706 KSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVH 785 (1630)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHH
T ss_conf 53235899877226656781899999999998377301568844688789999999986377999877101314536589
Q ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45687410115889999863119998358999986099995679999997205799646799999734578779999987
Q 000428 800 DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHL 879 (1520)
Q Consensus 800 ~L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~LL~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~ 879 (1520)
||++|||+|++++|||+|||+|||+|+|+|||+|+|+||+|++|++||++|+++||++|||+++|||||||+|+||||+|
T Consensus 786 ~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~ 865 (1630)
T 1xi4_A 786 DLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEAR 865 (1630)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985684157999973458754431665330688899999999998515899799999999887798889999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf 60498524889998999882179956662009997769999887512983189875035535888650021027999999
Q 000428 880 VSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQAR 959 (1520)
Q Consensus 880 l~eg~~d~~l~~alakiyids~~~pE~fL~~n~~yd~~vVgk~Ce~~dp~La~iay~~g~~d~~LI~v~n~n~~fk~~a~ 959 (1520)
+++|++||++||||||||||+|+|||+||++|++||+++||||||+|||+||||||+||+||++||++||+|+|||.|||
T Consensus 866 ~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~ar 945 (1630)
T 1xi4_A 866 IHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSR 945 (1630)
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 86789888999999999853689988984416752389999898752820677874046884999998842456999999
Q ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99980799889998168506788789999840178989912499999999957997788999998500488764210034
Q 000428 960 YVVERMDADLWEKVLTPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQ 1039 (1520)
Q Consensus 960 ylvk~~~~~lw~~vl~~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~~a~lp~eLi~lLekivl~~~~fs~N~~Lq 1039 (1520)
|||+|+|++||++||+++|+|||+|+|||++++||++.+|++||.+||+||.+|+|.|+|++||||++++++||+|++||
T Consensus 946 ylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 946 YLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99981688999998567818899999999985240106977747999999969898999999999973787554547899
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 37989987409137999999980899489999999859989999999961970899999997034099999999881782
Q 000428 1040 NLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEED 1119 (1520)
Q Consensus 1040 nLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~iaie~~L~EEA~~IYkK~~~~~~Ai~vLi~~~~~l~~A~e~Aek~~~~ 1119 (1520)
||+|+||||+|++|+|+||++++|||++++|.+|++.+++|||+.+|+|++++++|++++++++++|++|.++|++++.|
T Consensus 1026 nlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p 1105 (1630)
T 1xi4_A 1026 NLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEP 1105 (1630)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999858055999998741236999999998589899999999980887999999999986399999999854888
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
Q ss_conf 48999999887104589999999963991129999999992199669999999976201786314799999995099113
Q 000428 1120 AVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGD 1199 (1520)
Q Consensus 1120 eVws~lgkaql~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~~~ep~id~~li~~yAk~~~l~e 1199 (1520)
++||++|++|++.|+++|||++|+||+|++.|.+|+.+|.+.|+++++++||.|||++.++|.+|++++++|||++++.+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHH
T ss_conf 79999999998479899999999835996999999999997589999999999998424554222799999985267999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHH
Q ss_conf 99975186700099778533051109999999981029999999999816999999999992994349999999721013
Q 000428 1200 IEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEE 1279 (1520)
Q Consensus 1200 le~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~L~~y~~Ave~AkKA~~~k~wkev~~acv~~~e 1279 (1520)
+++|+.++|.++++.+|++|+++|+|++|+.+|++++||.++|+||+++|+|++|+++++||+++++|++++++|++.+|
T Consensus 1186 le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1186 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99998278899999999999836889999999984357999999999707899999999983898789999999863568
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCH
Q ss_conf 45887620123236334999999999529988999999800186210000347999998316802468999999976161
Q 000428 1280 FRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNI 1359 (1520)
Q Consensus 1280 ~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~ElI~Lle~gl~lerAh~g~fTeLailyaky~pekl~ehlk~y~~~iNi 1359 (1520)
|++|++||++|++|||++++++.+|+++|+|+|||+|+|+|+|++||||||||||+++|+||+|+|||||++.||+|+||
T Consensus 1266 f~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1266 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 89999987755328899999999999858999999999988566823768999999999748989999999999984065
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 79999988313247999999860548999999981391001001457899850016889999999985095128989999
Q 000428 1360 PKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNV 1439 (1520)
Q Consensus 1360 ~K~ir~ce~~~lW~E~vfLy~~~~e~D~A~~~mi~h~~~a~~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~ 1439 (1520)
||+||+|+++|+|+|+||||.+||+||+|+.+||+|+++||+|++||+++++++|+|+|||+++||++++|++++|||.+
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~ 1425 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 1425 (1630)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 26767777787899999999941609999999984637555457788874265469999999999986276889999987
Q ss_pred HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 83117977899998841875254889999741291789999999743222159999967852088928999984217899
Q 000428 1440 LALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFW 1519 (1520)
Q Consensus 1440 l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal~~l~ieeed~~~Lr~sId~y~nfd~~~la~~le~h~l~ 1519 (1520)
+.+|+||+|+|++++|++++||+||||++||.+|+++||||+|++|||||||++||+|||+|||||+++||+|||||||.
T Consensus 1426 l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl 1505 (1630)
T 1xi4_A 1426 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELI 1505 (1630)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 45227939999999874771776999999988536353099998733722358898777630474779998776212589
No 2
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=1.00 E-value=1 Score=1536.28 Aligned_cols=492 Identities=54% Similarity=0.932 Sum_probs=486.0
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 77899811465022477998997421141111067159998567998-29999869999965444673300026875266
Q 000428 2 AAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQN-SVVIIDMNQPMQPLRRPITADSALMNPNSRIL 80 (1520)
Q Consensus 2 ~~~~~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~-~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~ii 80 (1520)
|+++.||.|+|+++|+++||+|++|+|+++||||||||||||+.+++ ||+||||+||++|+||||+||||||||+++||
T Consensus 1 M~~~~PI~~~e~~~L~~lGi~~~~i~f~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~ii 80 (494)
T 1bpo_A 1 MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVI 80 (494)
T ss_dssp CCSSCCEEEEEEEEGGGGTCCTTSCSTTTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCE
T ss_pred CCCCCCCEEEEEECHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCEECCCCCCEEEECCCCCEE
T ss_conf 99889832675420421598842244531444168269998527998769999899998645044365033407777479
Q ss_pred EEECCCCCCCCCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCHHHCCCCCCCCEEE
Q ss_conf 65024888889808898301001212102577515877415884899823817998336998860112135687798189
Q 000428 81 ALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQII 160 (1520)
Q Consensus 81 Alra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~s~P~k~f~R~~~L~~~qIi 160 (1520)
|||+ |++|||||||+|+|||+|+|+|+|+||||||+++|||||+|+||||+|+|+++|+||||||++|++||||
T Consensus 81 ALra------g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QII 154 (494)
T 1bpo_A 81 ALKA------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (494)
T ss_dssp EEEE------TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred EEEC------CCEEEEECHHHHHHHCCEECCCCCEEEEECCCCEEEEECCCEEEEECCCCCCCCHHHEECCHHCCCCEEE
T ss_conf 9956------9848997157853104341588746999658984799838716996346888763132253011665578
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 84568998847888226898888764220278742122353201001000113303899998219999982388885432
Q 000428 161 NYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTS 240 (1520)
Q Consensus 161 ~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~f~~r~~~~~~~~~ 240 (1520)
|||+|+++|||+|+||+ +++++|+|+|||||+||++||+||||||||++++++|+++|++||||++|+++| +
T Consensus 155 nY~~d~~~kW~~l~GI~----~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g----~ 226 (494)
T 1bpo_A 155 NYRTDAKQKWLLLTGIS----AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG----G 226 (494)
T ss_dssp EEEECTTSSEEEEEEEE----EETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC----C
T ss_pred EEEECCCCCEEEEEEEC----CCCCCCCCEEEEEECCCCCCCHHEEEEEEEEEEECCCCCCCCEEEEEEEECCCC----C
T ss_conf 87877888769999651----568755423787641545440100031344787437998871289999955887----2
Q ss_pred EEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCEEEE
Q ss_conf 1899963799-999986312211138999889963158740344549999224148998355301665614689965783
Q 000428 241 KLHVIELGAQ-PGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLT 319 (1520)
Q Consensus 241 kL~i~Ei~~~-~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~giiyviTK~G~i~lyDletg~~i~~~rIs~~~iF~~ 319 (1520)
||||||||++ +|+|+|+||++|+|||||+++||||+||||+|||+|||||||||+|+||+|||+||||||||+||||+|
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t 306 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEE
T ss_conf 78999757876688885310102107853466760489951657889999657448999525341332403568735896
Q ss_pred ECCCCCCCEEEECCCCCEEEEEEECCCCCCCHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 01379981899918982999984058522010001689999999999269998368999999998700599999999980
Q 000428 320 SEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAE 399 (1520)
Q Consensus 320 ~~~~~~~Gi~~vn~~GqVl~v~i~~~~ivpyi~~~l~n~~la~~la~r~~lpgad~l~~~~F~~l~~~g~y~~AA~~AA~ 399 (1520)
|++++++||+||||+||||+|+||+++|||||+++|+|++||+++|+|+||||||+||++|||+||++|+|++||++||+
T Consensus 307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 307 APHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp EEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 36688885799836865999997622011566636588799999997569963789999999999874799999999985
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99987889988998764999999988279999998606888756569989999950041457977731656410664233
Q 000428 400 SPQGLLRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDL 479 (1520)
Q Consensus 400 sp~g~LRt~~Ti~rfk~~~~~~gq~~pLL~Yf~~ll~~g~ln~~eslEL~k~vl~qnr~~LlekWL~enkL~~Se~LGD~ 479 (1520)
||+|+|||++||+|||++|++|||++|||+||++||++|+||++||+||+|||++|||++|+|||++||||+|||||||+
T Consensus 387 sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDl 466 (494)
T 1bpo_A 387 APKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDL 466 (494)
T ss_dssp SGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 85664558999999862888999988899999999615765357756776888750688999998862873044776766
Q ss_pred HHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 2104912599999960998899999997
Q 000428 480 VKTVDNDLALKIYIKARATPKVVAAFAE 507 (1520)
Q Consensus 480 i~~~D~~LA~~vY~r~~~~~KvI~~~~e 507 (1520)
++++|+.||++||.||+||.|||+||+|
T Consensus 467 vk~~d~~LAl~IY~~a~~~~Kvi~cl~e 494 (494)
T 1bpo_A 467 VKSVDPTLALSVYLRANVPNKVIQCFAE 494 (494)
T ss_dssp HHHHCSHHHHHHHHHHCCCCC-------
T ss_pred HHHCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 6433989999999874894899998519
No 3
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=1246.44 Aligned_cols=439 Identities=54% Similarity=0.935 Sum_probs=437.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999996197089999999703409999999988178248999999887104589999999963991129999999992
Q 000428 1081 EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAED 1160 (1520)
Q Consensus 1081 EA~~IYkK~~~~~~Ai~vLi~~~~~l~~A~e~Aek~~~~eVws~lgkaql~~~~v~eAI~~Yika~d~s~~~evi~~a~~ 1160 (1520)
-||.||+||+.+.+|++||++|++++|||.+||++|++|+|||+||+|||++++|+|||+|||||+||++|.+||.+|++
T Consensus 16 ~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~ 95 (624)
T 3lvg_A 16 PRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANT 95 (624)
T ss_dssp -----------CCSTTTTCCGGGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 47898886068189999999863062889999998098008999999997569267999999947885889999999986
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
Q ss_conf 19966999999997620178631479999999509911399975186700099778533051109999999981029999
Q 000428 1161 ADVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAK 1240 (1520)
Q Consensus 1161 a~~~e~Li~yL~m~r~~~~ep~id~~li~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~k 1240 (1520)
+++|++||+||+|||++.+||+|||+|++||||+|+++++|+||+++|+++++.||||||++|+|+|||++|++++||+|
T Consensus 96 ~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak 175 (624)
T 3lvg_A 96 SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR 175 (624)
T ss_dssp SSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
T ss_conf 79889999999999987454401899999998617578999997599824388899999883688999999996763899
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999981699999999999299434999999972101345887620123236334999999999529988999999800
Q 000428 1241 LAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESG 1320 (1520)
Q Consensus 1241 LA~~lv~L~~y~~Ave~AkKA~~~k~wkev~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~ElI~Lle~g 1320 (1520)
||+|||+|++||+|||+||||||++|||+||+||+|++||||||+||||||+|||+|++|+++||++|+|+|||+|||+|
T Consensus 176 LAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999888999999986489027999999984731889999826320235888999999999679889999999977
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
Q ss_conf 18621000034799999831680246899999997616179999988313247999999860548999999981391001
Q 000428 1321 LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAW 1400 (1520)
Q Consensus 1321 l~lerAh~g~fTeLailyaky~pekl~ehlk~y~~~iNi~K~ir~ce~~~lW~E~vfLy~~~~e~D~A~~~mi~h~~~a~ 1400 (1520)
+|+||||||||||||||||||+|+|||||+|+||+|+||||+||+||++|+|+|+||||++|||||||+.|||+||++||
T Consensus 256 lglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw 335 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 335 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHC
T ss_conf 47873067899999999982588999999999997504789999999976289999999610137899999980885320
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 00145789985001688999999998509512898999983117977899998841875254889999741291789999
Q 000428 1401 DHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEA 1480 (1520)
Q Consensus 1401 ~h~~fk~ii~kvan~elyYkai~FyL~~~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vnea 1480 (1520)
+|++|||||+||+|+|+|||||+|||++||++++|||.+++||+||+|||++++|++++|||||||++||++|+++||||
T Consensus 336 ~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeA 415 (624)
T 3lvg_A 336 KEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 415 (624)
T ss_dssp CGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57899999997103899999999999848488999998602137809999999964883664999999998637999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 999743222159999967852088928999984217899
Q 000428 1481 LNEIYVEEEDYERLRESIDMHDNFDQIGLARRLRNMSFW 1519 (1520)
Q Consensus 1481 l~~l~ieeed~~~Lr~sId~y~nfd~~~la~~le~h~l~ 1519 (1520)
||+||||||||++||+|||+|||||+++||+|||||||+
T Consensus 416 ln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~ 454 (624)
T 3lvg_A 416 LNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELI 454 (624)
T ss_dssp HHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH
T ss_conf 999986051589999999873364689999988518058
No 4
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=1.00 E-value=1 Score=1142.87 Aligned_cols=362 Identities=51% Similarity=0.890 Sum_probs=356.4
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 77899811465022477998997421141111067159998567998-29999869999965444673300026875266
Q 000428 2 AAANAPISMKEVLTLPSVGINPQFITFTNVTMESDKYICVRETAPQN-SVVIIDMNQPMQPLRRPITADSALMNPNSRIL 80 (1520)
Q Consensus 2 ~~~~~Pi~~~e~~~L~~lGi~~~~i~f~~~t~eSdk~icvre~~~~~-~v~Ivdl~~~~~~~r~pi~AdsAimnP~~~ii 80 (1520)
|++++||+|+|+++|+++||+|++|+|+++||||||||||||+.+++ ||+||||+||++|+||||+||||||||+++||
T Consensus 2 m~~~~PI~~~e~~~L~~lGI~~~~i~f~~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~Vi 81 (365)
T 2xzh_A 2 MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVI 81 (365)
T ss_dssp CTTCCSEEEEEEEEGGGGTCCGGGCSTTTEEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEE
T ss_pred CCCCCCCEEEEEEEHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEE
T ss_conf 87789822887641310598841122322666468369998437998779999899998743242265045507786189
Q ss_pred EEECCCCCCCCCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCHHHCCCCCCCCEEE
Q ss_conf 65024888889808898301001212102577515877415884899823817998336998860112135687798189
Q 000428 81 ALKAQLPGTTQDHLQIFNIELKAKIKSHQMSEQVVFWKWISPKMLGVVTQTSVYHWSIEGDSEPVKMFDRTANLTNNQII 160 (1520)
Q Consensus 81 Alra~~~~~~g~~lQiFnle~k~klks~~~~e~vvfWkWis~~~l~lVT~~aVyHW~i~~~s~P~k~f~R~~~L~~~qIi 160 (1520)
|||+ |++|||||||+|+|||+|+|+|+|+||||||+++|||||+++||||+|+|+++|+||||||++|++||||
T Consensus 82 ALra------g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 82 ALKA------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp EEEE------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred EEEC------CCEEEEECHHHHHHHCCEECCCCCEEEEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCHHCCCCEEE
T ss_conf 9955------9869996358842212240578507999548874799827707997556888770005453010665579
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 84568998847888226898888764220278742122353201001000113303899998219999982388885432
Q 000428 161 NYKCDPTEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFATKSFNAGQVTS 240 (1520)
Q Consensus 161 ~Y~~~~~~kW~~l~Gi~~~~~~~~~~i~G~mQLyS~er~~sQ~ieghaa~F~~~~~~g~~~~~~l~~f~~r~~~~~~~~~ 240 (1520)
|||+|+++|||+|+||+ +++++|+|+|||||+||++||+||||||||++++++|+++|++|||||+|+++| +
T Consensus 156 nY~~d~~~kW~~l~GI~----~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g----~ 227 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGIS----AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG----G 227 (365)
T ss_dssp EEEECTTSCEEEEEEEE----EETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE----E
T ss_pred EEEECCCCCEEEEEEEE----CCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECCCC----C
T ss_conf 87888878779999571----368832115888760446450013254555888637998870299999936887----3
Q ss_pred EEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCEEEE
Q ss_conf 1899963799-999986312211138999889963158740344549999224148998355301665614689965783
Q 000428 241 KLHVIELGAQ-PGKPSFTKKQADLFFPPDFADDFPVAMQISHKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLT 319 (1520)
Q Consensus 241 kL~i~Ei~~~-~~~~~f~kk~~d~~fpp~~~~DFPv~mqvs~k~giiyviTK~G~i~lyDletg~~i~~~rIs~~~iF~~ 319 (1520)
||||||||++ +|+|+|+||++|+|||||+++||||+||||+|||+|||||||||+|+||+|||+||||||||+||||+|
T Consensus 228 kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~t 307 (365)
T 2xzh_A 228 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 307 (365)
T ss_dssp EEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEE
T ss_conf 89999868887789886334120347953468842799941547999999278679999866673788821579846996
Q ss_pred ECCCCCCCEEEECCCCCEEEEEEECCCCCCCHHCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 0137998189991898299998405852201000168999999999926999836899
Q 000428 320 SEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLV 377 (1520)
Q Consensus 320 ~~~~~~~Gi~~vn~~GqVl~v~i~~~~ivpyi~~~l~n~~la~~la~r~~lpgad~l~ 377 (1520)
|++++++||+||||+||||+|+||+++|||||+++|+|++||++||+|+||||||+||
T Consensus 308 a~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~~~l~n~~LA~~lA~R~~LpGAd~L~ 365 (365)
T 2xzh_A 308 APHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNNAGAEELF 365 (365)
T ss_dssp EEEGGGTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTCC-------
T ss_pred CCCCCCCCEEEECCCCEEEEEEECCCCEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 1567888689986897799999875417034551679889999999746999830139
No 5
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=971.04 Aligned_cols=432 Identities=54% Similarity=0.956 Sum_probs=429.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 61970899999997034099999999881782489999998871045899999999639911299999999921996699
Q 000428 1088 KFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDL 1167 (1520)
Q Consensus 1088 K~~~~~~Ai~vLi~~~~~l~~A~e~Aek~~~~eVws~lgkaql~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~L 1167 (1520)
|++++++|++||+++.++++||.+|+++++.|++|+++|++|+..|++++||++|+|++|++.|.+|+.+|...|+++++
T Consensus 1 k~~~~~~a~~~ll~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 1 KFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99870999999999744799999999859986799999999987699899999998089879999999999867989999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999976201786314799999995099113999751867000997785330511099999999810299999999998
Q 000428 1168 VRYLLMVRQKVKEPKVDSELIYAYAKIDRLGDIEEFILMPNVANLQNVGDRLYDDTLYEAAKIIYAFISNWAKLAVTLVK 1247 (1520)
Q Consensus 1168 i~yL~m~r~~~~ep~id~~li~~yAk~~~l~ele~fl~~~N~a~v~~vgd~~~eeg~YeaAk~~y~~~~N~~kLA~~lv~ 1247 (1520)
++||+|+|+..++|.++++|+++|+|+|++.++++|+.++|.++++.+|++|+++|+|++|+.+|++++||.+||.||++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~ 160 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 160 (449)
T ss_dssp ----------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998748410257999999998199999999884996899999999998718899999999976569999999998
Q ss_pred HCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 16999999999992994349999999721013458876201232363349999999995299889999998001862100
Q 000428 1248 LKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAH 1327 (1520)
Q Consensus 1248 L~~y~~Ave~AkKA~~~k~wkev~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~ElI~Lle~gl~lerAh 1327 (1520)
+|+|++||++++||+++++||+++++|++.++|++|+.||++|++|||++++++.+|++.|+|+|+|++||+|+|++|||
T Consensus 161 Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 161 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
T ss_conf 64599999999981895659999999998084899999899998487669999999998889999999999986775879
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCHHHHH
Q ss_conf 00347999998316802468999999976161799999883132479999998605489999999813910010014578
Q 000428 1328 MGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKD 1407 (1520)
Q Consensus 1328 ~g~fTeLailyaky~pekl~ehlk~y~~~iNi~K~ir~ce~~~lW~E~vfLy~~~~e~D~A~~~mi~h~~~a~~h~~fk~ 1407 (1520)
|||||||||+||||+|+|+|||+++||+|+||||+||+|+++|+|+|+||||++|||||+|+.|||+||++||+|++|||
T Consensus 241 ~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~ 320 (449)
T 1b89_A 241 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 320 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99998899999705989999999999998667578788877989999999998112399999999858764322688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99850016889999999985095128989999831179778999988418752548899997412917899999997432
Q 000428 1408 VAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMVAVQSNNVSAVNEALNEIYVE 1487 (1520)
Q Consensus 1408 ii~kvan~elyYkai~FyL~~~P~~l~dlL~~l~~rlD~~rvV~~~~k~~~ipLik~yL~~vq~~n~~~Vneal~~l~ie 1487 (1520)
||+||+|+|+||||++|||++||++++|||.++.||+||+|||+++++++++|||||||++||++|+++||||||+||||
T Consensus 321 ~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ie 400 (449)
T 1b89_A 321 IITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 400 (449)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98262678999999999984187989999998775269099999999738928789999999986379999999999871
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 22159999967852088928999984217899
Q 000428 1488 EEDYERLRESIDMHDNFDQIGLARRLRNMSFW 1519 (1520)
Q Consensus 1488 eed~~~Lr~sId~y~nfd~~~la~~le~h~l~ 1519 (1520)
||||++||+|||+|||||+++||+|||||||.
T Consensus 401 eed~~~lr~si~~~~nfd~~~l~~~le~h~l~ 432 (449)
T 1b89_A 401 EEDYQALRTSIDAYDNFDNISLAQRLEKHELI 432 (449)
T ss_dssp TTCHHHHHHHHHHCCCSCHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
T ss_conf 42599999999874375799999887438248
No 6
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=1.00 E-value=1 Score=803.20 Aligned_cols=679 Identities=18% Similarity=0.208 Sum_probs=629.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 79999998606888756569989999950041457977731656410664233210491259999996099889999999
Q 000428 427 LLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFA 506 (1520)
Q Consensus 427 LL~Yf~~ll~~g~ln~~eslEL~k~vl~qnr~~LlekWL~enkL~~Se~LGD~i~~~D~~LA~~vY~r~~~~~KvI~~~~ 506 (1520)
|+||+|.++.+|..++..++.|+|.+++.|+. +|+||+||.+|+|.++|+||+++||+||+++|.||+|++++|.+++
T Consensus 858 l~p~LE~~~~~g~~~~~~hnalakiyid~n~n--pe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~ 935 (1630)
T 1xi4_A 858 LLPWLEARIHEGCEEPATHNALAKIYIDSNNN--PERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCN 935 (1630)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC--HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 89999999867898889999999998536899--8898441675238999989875282067787404688499999884
Q ss_pred HHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7124999999999809912499999987411901499999998724---8999989789999999389489999999995
Q 000428 507 ERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQM---EGGCPVDYNTITDLFLQRNLIREATAFLLDV 583 (1520)
Q Consensus 507 e~g~f~~~~~Y~~~~~~~~d~~~lL~~~~~~nP~~~~~la~~l~~~---e~~~~~dv~~vV~~Fm~~~l~~Elt~lLl~i 583 (1520)
+||+|+.++||+++|++.++|.+||++ .|++| ++++++++++ |+.+|.+|+.+|++||.+|++.|++++|+++
T Consensus 936 ~n~l~k~~arylv~r~d~~lW~~vl~~---~n~~R-R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKi 1011 (1630)
T 1xi4_A 936 ENSLFKSLSRYLVRRKDPELWGSVLLE---SNPYR-RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKI 1011 (1630)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHCC---CCHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 245699999999981688999998567---81889-99999999852401069777479999999698989999999999
Q ss_pred HCCCCC--CCCHHHHHHHHHHHCCCC-HHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCC--------------
Q ss_conf 059998--874024679996311571-147888518988989946899999980808999872279--------------
Q 000428 584 LKPNLP--EHGFLQTKVLEINLVTFP-NVADAILANGMFSHYDRPRIAQLCEKAGLYMRALQHYTE-------------- 646 (1520)
Q Consensus 584 l~~n~~--~~~~LQt~Lle~nl~~~p-~Vad~Il~~~~l~~yD~~~IA~lce~agL~e~Ale~Y~~-------------- 646 (1520)
++++++ +|.+||++|+.|+|++++ ||++|| +++++||.++||.+|++.|+|++|+++|++
T Consensus 1012 vl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI---~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~ 1088 (1630)
T 1xi4_A 1012 VLDNSVFSEHRNLQNLLILTAIKADRTRVMEYI---NRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEH 1088 (1630)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH---HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 737875545478999999999985805599999---87412369999999985898999999999808879999999999
Q ss_pred CCCHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 8521377640266895569999500--79686999999999730020179999999999863204789999863055123
Q 000428 647 LPDIKRVIVNTHAIEPQSLVEFFGT--LSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSYEG 724 (1520)
Q Consensus 647 ~~dikR~~~~t~~~~~~~L~~~~~~--l~~~~~~e~l~~ll~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~e~ 724 (1520)
+.+++|++..++.++.+.+|..+|+ +..+..-|++++++|+++..++..| +..+++.+.||+
T Consensus 1089 i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eV----------------a~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV----------------VQAANTSGNWEE 1152 (1630)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH----------------HHHHHHCCCHHH
T ss_conf 8639999999985488879999999998479899999999835996999999----------------999997589999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHH
Q ss_conf 88878520034799736999999999809936999984037888937689888622799877820103344880245687
Q 000428 725 LYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHY 804 (1520)
Q Consensus 725 L~~yL~~~~~~~~d~~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~~y 804 (1520)
+..||.|++++.++|.|++.++.|++|++++.++|.++..+|..+...+|++|++.+.++++..+| ....+|. +|+.+
T Consensus 1153 AIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y-~kA~ny~-rLA~t 1230 (1630)
T 1xi4_A 1153 LVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLY-NNVSNFG-RLAST 1230 (1630)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHH-HHHHH
T ss_conf 999999998424554222799999985267999999982788999999999998368899999999-8435799-99999
Q ss_pred HHC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 410-115889999863119998358999986099995679999--99720579964679999973457877999998760
Q 000428 805 LYT-NNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGL--ILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVS 881 (1520)
Q Consensus 805 Ly~-~~~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~L--L~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~l~ 881 (1520)
|.+ ......|+.|-++.|+..--+|..+|+|. .|+.+++. ++.+.+++.+++++..||++|++++++.++|++++
T Consensus 1231 LvkLge~q~AIEaarKA~n~~aWkev~~acve~--~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDG--KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 997078999999999838987899999998635--688999998775532889999999999985899999999998856
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHH----HHHHHHHCC--CCEEEEEEECCCCHHHH---H---HHCC
Q ss_conf 4985248899989998821799566620099977699----998875129--83189875035535888---6---5002
Q 000428 882 EGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRV----VGKYCEKRD--PTLAVVAYRRGQCDDEL---I---NVTN 949 (1520)
Q Consensus 882 eg~~d~~l~~alakiyids~~~pE~fL~~n~~yd~~v----Vgk~Ce~~d--p~La~iay~~g~~d~~L---I---~v~n 949 (1520)
..++|+++||+||.+| +++.||++++|.++||+++ |.+.||+.+ ++++|++.++|++|.++ | ..||
T Consensus 1309 LeraH~gmftELaiLy--aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1309 LERAHMGMFTELAILY--SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred CCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHH
T ss_conf 6823768999999999--74898999999999998406526767777787899999999941609999999984637555
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-HCCCC---HHHHHHH
Q ss_conf 10279999999998079988999816---85067887899998401789899124999999999-57997---7889999
Q 000428 950 KNSLFKLQARYVVERMDADLWEKVLT---PENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFM-TADLP---HELIELL 1022 (1520)
Q Consensus 950 ~n~~fk~~a~ylvk~~~~~lw~~vl~---~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~-~a~lp---~eLi~lL 1022 (1520)
+|++||.. +++.+|+++++++++ +++| . ++++++++..|++ |++++|+.|. +++|| ++|..++
T Consensus 1387 ~~~~Fk~~---i~kv~n~elyykai~Fyl~~~P--~-~lndLl~~l~~rl----D~~R~V~l~~~~~~l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1387 KEGQFKDI---ITKVANVELYYRAIQFYLEFKP--L-LLNDLLMVLSPRL----DHTRAVNYFSKVKQLPLVKPYLRSVQ 1456 (1630)
T ss_pred HHHHHHHH---HCCCCCHHHHHHHHHHHHHHCH--H-HHHHHHHHHHHCC----CHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 45778887---4265469999999999986276--8-8999998745227----93999999987477177699999998
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHH---HHHHHHHHCCCCHHHHHHH
Q ss_conf 9850048876421003437989987409137999999980899489999999859989---9999999619708999999
Q 000428 1023 EKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE---EAFAIFKKFNLNVQAVNVL 1099 (1520)
Q Consensus 1023 ekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~iaie~~L~E---EA~~IYkK~~~~~~Ai~vL 1099 (1520)
.+ ++ -.+|++|++|+| +.+|++.|+++|+.+||||..++|..+++|+|.| .|..+|+|+++|.+|+...
T Consensus 1457 ~~---n~--~~Vneal~el~i---eeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~ 1528 (1630)
T 1xi4_A 1457 NH---NN--KSVNESLNNLFI---TEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC 1528 (1630)
T ss_pred HH---CC--HHHHHHHHHHHC---CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 85---36--353099998733---72235889877763047477999877621258999999999998558699999999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 970340999999998817824899999988710458999999996399112999999999219966999
Q 000428 1100 LDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDADVYHDLV 1168 (1520)
Q Consensus 1100 i~~~~~l~~A~e~Aek~~~~eVws~lgkaql~~~~v~eAI~~Yika~d~s~~~evi~~a~~a~~~e~Li 1168 (1520)
+++. +|.+|+++|.+|+++++ ++|.+.||+..+++++|.+|+++||+.=.|+.-.
T Consensus 1529 k~d~-l~~dAm~~a~~S~d~e~-------------~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd~vl 1583 (1630)
T 1xi4_A 1529 KKDS-LYKDAMQYASESKDTEL-------------AEELLQWFLQEEKRECFGACLFTCYDLLRPDVVL 1583 (1630)
T ss_pred HHCC-CHHHHHHHHHHCCCHHH-------------HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 8666-79999999997499899-------------9999999982697469999999875347804999
No 7
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=668.84 Aligned_cols=468 Identities=17% Similarity=0.191 Sum_probs=439.2
Q ss_pred HHHHHHCC--------------CCCCHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99987227--------------98521377640266895569999500--796869999999997300201799999999
Q 000428 638 MRALQHYT--------------ELPDIKRVIVNTHAIEPQSLVEFFGT--LSREWALECMKDLLLVNLRGNLQIIVQTAK 701 (1520)
Q Consensus 638 e~Ale~Y~--------------~~~dikR~~~~t~~~~~~~L~~~~~~--l~~~~~~e~l~~ll~~n~~~nlq~vv~~a~ 701 (1520)
--||++|+ ++.||+|+..++++++.+.+|+.+|+ |....+-|++++++|++++++++.||
T Consensus 15 ~~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi---- 90 (624)
T 3lvg_A 15 VPRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV---- 90 (624)
T ss_dssp ------------CCSTTTTCCGGGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHH----
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH----
T ss_conf 1478988860681899999998630628899999980980089999999975692679999999478858899999----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 99863204789999863055123888785200347997369999999998099369999840378889376898886227
Q 000428 702 EYCEQLGVEACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAK 781 (1520)
Q Consensus 702 ~y~~~~g~~~li~~fe~~~~~e~L~~yL~~~~~~~~d~~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~ 781 (1520)
+.+++.+.||+|+.||.|+|++++||.|++.+|+|+||+|++.|+|.|+..+|++|.+.|||+|++.+
T Consensus 91 ------------~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 91 ------------QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp ------------HHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSC
T ss_pred ------------HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf ------------99986798899999999999874544018999999986175789999975998243888999998836
Q ss_pred CCCCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH-------HHHHHHHCCCCHHHHHHH--HHHHCC
Q ss_conf 99877820103344880245687410115889999863119998358-------999986099995679999--997205
Q 000428 782 LPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPL-------VVGQLLDDECPEDFIKGL--ILSVRS 852 (1520)
Q Consensus 782 l~d~~pli~vcdr~~~v~~L~~yLy~~~~~~~Ie~Yv~~vnpa~~~~-------Vv~~lld~~~~E~~i~~L--L~~v~~ 852 (1520)
+|++++++| .+++||. +|++|| ++++.|+.||++||++. |+.+|+|. .|++++++ |++|+|
T Consensus 159 lYeAAKily-s~isN~a-kLAstL------V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~--~EfrLAqicGLniIvh 228 (624)
T 3lvg_A 159 MYDAAKLLY-NNVSNFG-RLASTL------VHLGEYQAAVDGARKANSTRTWKEVCFACVDG--KEFRLAQMCGLHIVVH 228 (624)
T ss_dssp CSTTSSTTG-GGSCCCT-TTSSSS------SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS--CTTTTTTHHHHHHHCC
T ss_pred CHHHHHHHH-HHCCCHH-HHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--HHHHHHHHHCCHHCCC
T ss_conf 889999999-9676389-999999------99988899999998648902799999998473--1889999826320235
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHH----HHHHHHHCC-
Q ss_conf 799646799999734578779999987604985248899989998821799566620099977699----998875129-
Q 000428 853 LLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRV----VGKYCEKRD- 927 (1520)
Q Consensus 853 ~~~~~eLv~~~E~R~rl~~L~~~LE~~l~eg~~d~~l~~alakiyids~~~pE~fL~~n~~yd~~v----Vgk~Ce~~d- 927 (1520)
++++++||+.||+||+|++|+++||++++.+++||||||+||++| ++|.|||+|+|.+.||||+ |.+.||+.+
T Consensus 229 adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILY--sKY~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 229 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY--SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHH--HSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 888999999999679889999999977478730678999999999--825889999999999975047899999999762
Q ss_pred -CCEEEEEEECCCCHHH---HH---HHCCCCHHHHHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHHCCCCCCC
Q ss_conf -8318987503553588---86---500210279999999998079988999816---8506788789999840178989
Q 000428 928 -PTLAVVAYRRGQCDDE---LI---NVTNKNSLFKLQARYVVERMDADLWEKVLT---PENEYRRQLIDQVVSTALPESK 997 (1520)
Q Consensus 928 -p~La~iay~~g~~d~~---LI---~v~n~n~~fk~~a~ylvk~~~~~lw~~vl~---~~n~~r~~lidqv~~~alpe~~ 997 (1520)
|+|+|++.+++++|++ || ..+|+|+.||+. ++|++|+|+++++++ +++| .|+.+++++..|++
T Consensus 307 W~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdi---i~KVaN~EiyYKAi~FYL~e~P---~lL~DLL~vL~prl- 379 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI---ITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRL- 379 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTT---GGGCSCSHHHHHHHHHHTTSCC---TTSHHHHHHHCTTC-
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHHHHH---HHHCCHHHHHHHHHHHHHHHCH---HHHHHHHHHCCCCC-
T ss_conf 8999999961013789999998088532057899999---9971038999999999998484---88999998602137-
Q ss_pred CCHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 91249999999995-7997---7889999985004887642100343798998740913799999998089948999999
Q 000428 998 SPEQVSAAVKAFMT-ADLP---HELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVA 1073 (1520)
Q Consensus 998 ~~~~vs~~Vkaf~~-a~lp---~eLi~lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~ia 1073 (1520)
|++++|+.|.. ++|| ++|++++++ + ...+|++|++|+| +++|++.|+++|+.+||||+..+|..+
T Consensus 380 ---Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~---N--~~aVNeAln~L~I---EEEDy~~LR~SId~ydNFD~i~LA~rL 448 (624)
T 3lvg_A 380 ---DHTRAVNYFSKVKQLPLVKPYLRSVQNH---N--NKSVNESLNNLFI---TEEDYQALRTSIDAYDNFDNISLAQRL 448 (624)
T ss_dssp ---CSTTTHHHHHTTTCGGGGTGGGTSCCCS---C--CHHHHHHHHHHHH---HTTCCHHHHHTTSSCCCSCTTHHHHHH
T ss_pred ---CHHHHHHHHHHCCCCHHHHHHHHHHHHH---H--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---8099999999648836649999999986---3--7999999999986---051589999999873364689999988
Q ss_pred HHCCCHH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCH
Q ss_conf 9859989---9999999619708999999970340999999998817824899999988710458999999996399112
Q 000428 1074 VEAQLYE---EAFAIFKKFNLNVQAVNVLLDNIRSIERAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQ 1150 (1520)
Q Consensus 1074 ie~~L~E---EA~~IYkK~~~~~~Ai~vLi~~~~~l~~A~e~Aek~~~~eVws~lgkaql~~~~v~eAI~~Yika~d~s~ 1150 (1520)
++|+|.| .|..||+|+++|.+|+.+++++. .|++|+++|..|+++++ ++|.++||++.++++|
T Consensus 449 EkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-lykDAietAa~S~~~el-------------aeeLL~yFv~~g~~Ec 514 (624)
T 3lvg_A 449 EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS-LYKDAMQYASESKDTEL-------------AEELLQWFLQEEKREC 514 (624)
T ss_dssp HTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-CTTGGGTTTTTCCCTTH-------------HHHHHHHHHHHCSTHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CHHHHHHHHHHCCCHHH-------------HHHHHHHHHHCCCHHH
T ss_conf 518058999999999985240899999997115-48999999997399789-------------9999999997386589
Q ss_pred HHHHHHHHHHCCCHH
Q ss_conf 999999999219966
Q 000428 1151 FLDVIRAAEDADVYH 1165 (1520)
Q Consensus 1151 ~~evi~~a~~a~~~e 1165 (1520)
|.+|+++||+.=.|+
T Consensus 515 F~a~LytCYdLlrpD 529 (624)
T 3lvg_A 515 FGACLFTCYDLLRPD 529 (624)
T ss_dssp HHHHHHHTSSSSSCH
T ss_pred HHHHHHHHHHCCCHH
T ss_conf 999999986225807
No 8
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=411.10 Aligned_cols=409 Identities=18% Similarity=0.187 Sum_probs=369.3
Q ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 798521377640266895569999500--796869999999997300201799999999998632047899998630551
Q 000428 645 TELPDIKRVIVNTHAIEPQSLVEFFGT--LSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVEACIKLFEQFKSY 722 (1520)
Q Consensus 645 ~~~~dikR~~~~t~~~~~~~L~~~~~~--l~~~~~~e~l~~ll~~n~~~nlq~vv~~a~~y~~~~g~~~li~~fe~~~~~ 722 (1520)
.++.+++|++.+.+.++.+-+|..+|+ +.....-+++++++++.+++.++.|+. .++..+.|
T Consensus 14 ~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~----------------~ae~~g~~ 77 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQ----------------AANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH----------------HHHHCCCH
T ss_conf 97447999999998599867999999999876998999999980898799999999----------------99867989
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHH
Q ss_conf 23888785200347997369999999998099369999840378889376898886227998778201033448802456
Q 000428 723 EGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLT 802 (1520)
Q Consensus 723 e~L~~yL~~~~~~~~d~~V~~kyi~A~~k~~q~~EvEr~~resn~yd~e~vk~~lk~~~l~d~~pli~vcdr~~~v~~L~ 802 (1520)
|++..||.|+|+..++|.|.+.++++++|+|++.++|.+.+.+|...-..+|+.|++.++++.+...| ....+|. .|+
T Consensus 78 EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y-~~a~n~~-~LA 155 (449)
T 1b89_A 78 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLY-NNVSNFG-RLA 155 (449)
T ss_dssp -------------------------------CHHHHTTTTTCC----------------CTTTHHHHH-HHTTCHH-HHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHH-HHH
T ss_conf 99999999998748410257999999998199999999884996899999999998718899999999-9765699-999
Q ss_pred HHHHCCH-HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8741011-5889999863119998358999986099995679999--997205799646799999734578779999987
Q 000428 803 HYLYTNN-MLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGL--ILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHL 879 (1520)
Q Consensus 803 ~yLy~~~-~~~~Ie~Yv~~vnpa~~~~Vv~~lld~~~~E~~i~~L--L~~v~~~~~~~eLv~~~E~R~rl~~L~~~LE~~ 879 (1520)
.+|++-+ ....++.|.++.+|..--+|+++|++. .|+..++. +..+.+++.++++|+.|+++|++.+++.+||++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~--~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG--KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99998645999999999818956599999999980--8489999989999848766999999999888999999999998
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHH----HHHHHHHCC--CCEEEEEEECCCCHHH---HH---HH
Q ss_conf 604985248899989998821799566620099977699----998875129--8318987503553588---86---50
Q 000428 880 VSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRV----VGKYCEKRD--PTLAVVAYRRGQCDDE---LI---NV 947 (1520)
Q Consensus 880 l~eg~~d~~l~~alakiyids~~~pE~fL~~n~~yd~~v----Vgk~Ce~~d--p~La~iay~~g~~d~~---LI---~v 947 (1520)
++..++|+++||+||++| ++++||++++|.+.|++++ |.+.||+.+ ++++|+++++|++|++ || ..
T Consensus 234 L~le~ah~~~ftel~il~--~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 234 LGLERAHMGMFTELAILY--SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp TTSTTCCHHHHHHHHHHH--HTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHH
T ss_conf 677587999998899999--705989999999999998667578788877989999999998112399999999858764
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-HCCCC---HHHHH
Q ss_conf 0210279999999998079988999816---85067887899998401789899124999999999-57997---78899
Q 000428 948 TNKNSLFKLQARYVVERMDADLWEKVLT---PENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFM-TADLP---HELIE 1020 (1520)
Q Consensus 948 ~n~n~~fk~~a~ylvk~~~~~lw~~vl~---~~n~~r~~lidqv~~~alpe~~~~~~vs~~Vkaf~-~a~lp---~eLi~ 1020 (1520)
+|+|+.||+. ++|.++.|+++++++ +++| . ++++++++..|++ |++++|+.|. +++|| ++|++
T Consensus 312 a~~~~~f~~~---~~kv~n~elyYkai~fyl~~~p--~-~l~~ll~~l~~~l----d~~r~v~~~~~~~~l~l~~~yl~~ 381 (449)
T 1b89_A 312 AWKEGQFKDI---ITKVANVELYYRAIQFYLEFKP--L-LLNDLLMVLSPRL----DHTRAVNYFSKVKQLPLVKPYLRS 381 (449)
T ss_dssp TCCHHHHHHH---HHHCSSTHHHHHHHHHHHHHCG--G-GHHHHHHHHGGGC----CHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred HHHHHHHHHH---HHCHHHHHHHHHHHHHHHHCCH--H-HHHHHHHHHHHCC----CCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 3226889999---8262678999999999984187--9-8999999877526----909999999973892878999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHH---HHHHHHHHCCCCH
Q ss_conf 999850048876421003437989987409137999999980899489999999859989---9999999619708
Q 000428 1021 LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYE---EAFAIFKKFNLNV 1093 (1520)
Q Consensus 1021 lLekivl~~~~fs~N~~LqnLlIlta~k~d~~kl~~yI~~ldnyd~~~IA~iaie~~L~E---EA~~IYkK~~~~~ 1093 (1520)
++++ ++ -++|++|++|+| .++|+..|+++|+.+||||+..+|..+++|+|.| .|..||+|+++|.
T Consensus 382 v~~~---n~--~~vnealn~l~i---eeed~~~lr~si~~~~nfd~~~l~~~le~h~l~~~r~iaa~~~~~~~~~~ 449 (449)
T 1b89_A 382 VQNH---NN--KSVNESLNNLFI---TEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWK 449 (449)
T ss_dssp HHTT---CC--HHHHHHHHHHHH---HTTCHHHHHHHHHHCCCSCHHHHHHHHTTCSSHHHHHHHHHHHC------
T ss_pred HHHH---HH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9986---37--999999999987---14259999999987437579999988743824899999999987555789
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=110.47 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHC-----CCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8248999999887104589999999963-----99112999999999219966999999997
Q 000428 1118 EDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMV 1174 (1520)
Q Consensus 1118 ~~eVws~lgkaql~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~ 1174 (1520)
+++.|+.+|..+...|+.++|+..|-++ ++++.+.....++...+++++-++++..+
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 127 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 66999999999987799999999999998749653999999999999858999999999999
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=109.53 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHC-----CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 78248999999887104589999999963-----99112999999999219966999999997620-1786314799999
Q 000428 1117 EEDAVWSQVAKAQLREGLVSDAIESFIRA-----DDATQFLDVIRAAEDADVYHDLVRYLLMVRQK-VKEPKVDSELIYA 1190 (1520)
Q Consensus 1117 ~~~eVws~lgkaql~~~~v~eAI~~Yika-----~d~s~~~evi~~a~~a~~~e~Li~yL~m~r~~-~~ep~id~~li~~ 1190 (1520)
+++.+|+.+|..+...|+.++|+..|.++ +++..+...+.++...+++++-++++..+... ..++..-..++.+
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 54799999999999835699999999999872977789999999999975777999999999998681343899999999
Q ss_pred HHHHCCHHHHHHHHCC-----CCCCHH-HHHHHHHHCCCCHHHHHHHHHHH---------------CCHHHHHHHHHHHC
Q ss_conf 9950991139997518-----670009-97785330511099999999810---------------29999999999816
Q 000428 1191 YAKIDRLGDIEEFILM-----PNVANL-QNVGDRLYDDTLYEAAKIIYAFI---------------SNWAKLAVTLVKLK 1249 (1520)
Q Consensus 1191 yAk~~~l~ele~fl~~-----~N~a~v-~~vgd~~~eeg~YeaAk~~y~~~---------------~N~~kLA~~lv~L~ 1249 (1520)
|.+.|++.+...++.. ++.... ..+|+.+...|+++.|...|... .-|..++.+|.+.|
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99857999999999999984888767999999999981899999999999998532345453549999999999999804
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999299434999999972101345887620123236334999999999529988999999800186210000
Q 000428 1250 QFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMG 1329 (1520)
Q Consensus 1250 ~y~~Ave~AkKA~~~k~wkev~~acv~~~e~rLA~~~gl~li~~~d~l~elv~~Ye~~G~f~ElI~Lle~gl~lerAh~g 1329 (1520)
++++|.+..+++-.... .+++....+...|...|.+++++.++++++.++..+..
T Consensus 531 ~~~~A~~~~~~~~~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLST-------------------------NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp CHHHHHHHHHHHHHHSS-------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHHCC-------------------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 79999999999997389-------------------------97389999999999817899999999999720888748
Q ss_pred HHHHHHHHHH
Q ss_conf 3479999983
Q 000428 1330 IFTELGVLYA 1339 (1520)
Q Consensus 1330 ~fTeLailya 1339 (1520)
....|+.+|+
T Consensus 586 ~~~~l~~~~~ 595 (597)
T 2xpi_A 586 ASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
T ss_conf 9999999874
Done!