Your job contains 1 sequence.
>000430
MKDEQPVVAGRRRSRGAEASARAEALERLKALRRGGRRSGDSVGYNIKLENPIYDTVAED
EYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIE
KRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMFKKSKDEKVKESESVIDEVLA
EFAPDEADRERRRRSVSSNIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCD
VVEESKELKWESDNSTELTKRDNFVEVKEKVKDEVNEDVKECKKLNAKISTEKDPLLSAT
AGWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV
KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVAL
GLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGE
NFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVS
SSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML
SHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLV
GHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIA
GRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGE
TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK
FTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPK
KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQ
RRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGRE
ILRSTVDLVQNNLNLEVIYGDTDSIMIHSGIDDIAKAKAIAGKVIQEVNKKYKCLEIDLD
GLYKRMLLLKKKKYAAVKVQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSE
RSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK
QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQ
IHPVVSRLCASIEGTSPERLADCLGLDPSKFQSKPSETMSSDPSSSLLFAVGDEERYRGC
EPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISP
GMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGR
LVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIR
ERCAYGWVKLNDIAISV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000430
(1517 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|O48653 - symbol:LOC_Os01g64820 "DNA polymerase ... 4555 0. 1
UNIPROTKB|Q0JHE4 - symbol:Os01g0868300 "DNA polymerase" s... 4343 0. 2
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 1236 1.0e-190 4
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 1181 7.1e-188 4
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 1181 7.1e-188 4
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 1221 5.5e-186 4
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 1242 9.0e-186 4
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 1166 3.0e-185 4
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 1215 5.4e-184 3
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 1215 5.4e-184 3
UNIPROTKB|Q59J88 - symbol:Q59J88 "DNA polymerase" species... 1234 3.8e-183 3
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 1205 2.3e-181 3
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 1195 4.9e-181 4
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 1209 7.9e-181 3
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 1189 7.0e-180 3
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 1197 1.5e-179 3
UNIPROTKB|Q7SBT9 - symbol:NCU07870 "DNA polymerase" speci... 972 1.9e-165 4
DICTYBASE|DDB_G0282191 - symbol:polA1 "DNA polymerase alp... 761 1.1e-139 6
UNIPROTKB|A8J9T2 - symbol:POLA1 "DNA polymerase" species:... 623 6.1e-139 6
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 1141 5.0e-136 3
SGD|S000005046 - symbol:POL1 "Catalytic subunit of the DN... 868 7.2e-136 5
ASPGD|ASPL0000000737 - symbol:AN10755 species:162425 "Eme... 1122 1.7e-131 3
FB|FBgn0259113 - symbol:DNApol-alpha180 "DNA polymerase a... 978 1.1e-130 3
UNIPROTKB|Q5B0J8 - symbol:AN5932.2 "DNA polymerase" speci... 1122 5.4e-128 3
UNIPROTKB|Q9NAH1 - symbol:Y47D3A.29 "DNA polymerase" spec... 837 1.1e-127 4
WB|WBGene00012936 - symbol:Y47D3A.29a species:6239 "Caeno... 837 1.6e-127 4
UNIPROTKB|C7IVS4 - symbol:Y47D3A.29 "DNA polymerase" spec... 837 1.6e-127 4
UNIPROTKB|Q755Y6 - symbol:AER381C "DNA polymerase" specie... 1070 8.2e-122 3
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 915 8.1e-111 4
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 542 1.4e-89 2
UNIPROTKB|I3LIH4 - symbol:POLA1 "DNA polymerase" species:... 810 9.5e-80 1
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 284 2.3e-53 4
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 245 2.7e-40 4
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 291 7.2e-37 3
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 257 5.5e-34 4
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 245 7.3e-34 5
UNIPROTKB|K7GS14 - symbol:LOC100627036 "Uncharacterized p... 328 7.9e-34 2
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 236 4.6e-32 3
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 236 6.0e-32 3
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 235 6.0e-32 3
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 234 7.6e-32 3
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 234 7.6e-32 3
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 232 1.3e-31 3
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 232 1.4e-31 3
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 240 1.9e-31 3
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 247 2.9e-31 4
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 247 2.9e-31 4
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 221 8.1e-31 4
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 238 3.4e-30 3
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 232 1.1e-29 3
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 299 1.6e-29 3
UNIPROTKB|I3LGG7 - symbol:LOC100627036 "Uncharacterized p... 331 1.8e-28 1
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 258 2.2e-28 4
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 258 2.2e-28 4
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 240 8.8e-28 5
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 290 4.6e-26 3
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 248 6.5e-26 3
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 167 2.0e-22 3
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 236 2.9e-22 5
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 234 3.1e-22 3
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 234 3.1e-22 3
TIGR_CMR|SO_1820 - symbol:SO_1820 "DNA polymerase II" spe... 187 4.0e-19 4
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 203 4.7e-19 4
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 185 9.9e-19 3
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 155 1.8e-18 4
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 187 3.0e-18 4
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 263 3.5e-18 1
UNIPROTKB|A6V6S5 - symbol:polB "DNA polymerase" species:3... 195 1.3e-16 5
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 133 1.4e-16 5
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 181 7.0e-16 4
UNIPROTKB|P21189 - symbol:polB "DNA polymerase II" specie... 212 1.3e-15 3
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 182 2.4e-15 3
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 186 3.1e-15 2
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 186 3.1e-15 2
UNIPROTKB|K7GQ23 - symbol:LOC100627036 "Uncharacterized p... 206 3.6e-15 1
UNIPROTKB|P26811 - symbol:dpo1 "DNA polymerase 1" species... 242 4.2e-15 3
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 173 2.8e-13 4
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 141 3.7e-11 6
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 136 4.9e-11 5
UNIPROTKB|Q9KSP4 - symbol:VC_1212 "DNA polymerase" specie... 199 1.5e-10 4
TIGR_CMR|VC_1212 - symbol:VC_1212 "DNA polymerase II" spe... 199 1.5e-10 4
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 138 1.8e-10 6
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 138 2.1e-10 6
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 143 4.1e-10 6
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 154 6.9e-10 3
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 141 1.4e-09 2
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 133 3.5e-09 6
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 130 1.0e-08 6
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 130 1.1e-08 6
UNIPROTKB|F1RZP3 - symbol:F1RZP3 "Uncharacterized protein... 101 3.7e-07 3
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 112 1.2e-06 2
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 117 1.3e-06 4
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 117 1.3e-06 4
UNIPROTKB|A8IXV5 - symbol:CHLREDRAFT_172920 "Predicted pr... 128 0.00011 2
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 137 0.00015 6
>UNIPROTKB|O48653 [details] [associations]
symbol:LOC_Os01g64820 "DNA polymerase alpha catalytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IEP] [GO:0006273 "lagging strand elongation" evidence=IEP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 OMA:CASIQGT EMBL:AB004461 EMBL:AP003286
STRING:O48653 Gramene:O48653 Uniprot:O48653
Length = 1534
Score = 4555 (1608.5 bits), Expect = 0., P = 0.
Identities = 912/1499 (60%), Positives = 1103/1499 (73%)
Query: 47 IKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDE 106
+++E PIYDTVAE++Y ALVARRR++A FIVDDDGLGY D+G+EEDW+ + SSSD+
Sbjct: 48 VRIEAPIYDTVAEEDYAALVARRRKDAGAFIVDDDGLGYADDGREEDWTHRTIHSSSDEG 107
Query: 107 S--LDGQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQRLSAMLTSTAMF--XX 162
S DG +KQ + K+ Q+ + S AAA M ++ S +S
Sbjct: 108 SDGEDGAPRKRKQP-RPQSKRPPQQSAAAASLS-AAAAMMGKQRLSSMFTSSVFRKPGSD 165
Query: 163 XXXXXXXXXXXXIDEVLAEFAPDEADXXXXXXXXXX--------NIKSFVSVNSVKTNSQ 214
+D+V+AEFAPD+ D + + +V ++
Sbjct: 166 RGRDSSLAADSIVDDVIAEFAPDDNDREERRRRVGRVCAPAPAPTTTAHIKAENVAVDTA 225
Query: 215 LVTNSTN--SVKENSDLINNFVQIQNCDVVEESKELKWESDNSTELTKRDNFXXXXXXXX 272
+ S N E SD N+ DV E K L S EL N
Sbjct: 226 MAFRSDNVFEAHEVSDHGNDMDMELKPDVEMEPK-LDTPLGASAELANNSN-SLEEPKQE 283
Query: 273 XXXXXXXXXXXXLNAKISTEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----Q 323
LNAKI TE + SATAGW ++ G G+ EG N +
Sbjct: 284 ANGEVKIEKVHRLNAKIKTEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDE 343
Query: 324 ESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAI 383
SEFE+ D G+LPFYILDA+E+ GAN GT+YLFGKV+ G HSCCVVVKNMQRC+YAI
Sbjct: 344 SSEFELKD-GALPFYILDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAI 402
Query: 384 PNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPV 443
P+ +F D I +LEK++ S SP + R L ++A GLK+EIA++L + NVSN+ ++PV
Sbjct: 403 PSSSIFPRDTISRLEKNSTTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPV 461
Query: 444 KRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVK 503
KR YAF + ++P GE YVLKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+K
Sbjct: 462 KRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIK 521
Query: 504 GPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVF 563
GPSWLSISKF +CPA QRVSWCK+E+TVDSPKDI V +S + EVPPV V A+NLKT+
Sbjct: 522 GPSWLSISKFLACPATQRVSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTII 580
Query: 564 NKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT 623
N++ +V+EIVSASV+CCH+ KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++
Sbjct: 581 NEKHNVHEIVSASVICCHRVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESS 640
Query: 624 DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS 683
DRN KAGSNVL ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS
Sbjct: 641 DRNQKAGSNVLALESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPS 700
Query: 684 SMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
+MWSKIGRL+RS MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLT
Sbjct: 701 NMWSKIGRLRRSVMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLT 760
Query: 744 QLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
QLA+TQL K+RKEV PHD+ MFQ+ +L++L+EYGETDA L++ELMFHLSVLPLTRQLT
Sbjct: 761 QLAETQLKKERKEVSPHDIPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLT 820
Query: 804 NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
NISGNLWGKTLQG+RAQRVEYLLLHAF A+K+IVPDKF KE K++ N E
Sbjct: 821 NISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARP 880
Query: 864 EELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQE 923
+E D + D++ H D K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQE
Sbjct: 881 DEA---DPSIDDEGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQE 937
Query: 924 YNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQ 983
YNICFTTV+RS DG VP+LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQ
Sbjct: 938 YNICFTTVDRSADGNVPNLPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQ 997
Query: 984 QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTD 1043
QQALKLTANSMYGCLGFSNSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTD
Sbjct: 998 QQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTD 1057
Query: 1044 SIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKD 1103
SIMIH+ VIQEVNKKY+CLEIDLDG D
Sbjct: 1058 SIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-D 1116
Query: 1104 GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS 1163
G E IERKGLDMVRRDWSLLSKE+GDFCL+QILS SC+DV+ESIH+SL++VQE MR
Sbjct: 1117 GSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRG 1176
Query: 1164 GQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
GQ LEKY+ITK+LTK PE YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q
Sbjct: 1177 GQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQD 1235
Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADC 1283
+ S S GIAQRARHP+ELK+ KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+C
Sbjct: 1236 SESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAEC 1295
Query: 1284 LGLDPSKFQXXXXXXXXXXXXXXLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
LGLD SKFQ LL + DE ERYRGCEPL LSCPSCS+TFDCP V S
Sbjct: 1296 LGLDSSKFQSRLTESDNQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSL 1355
Query: 1343 ICMSVSEKPSKP----ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMY 1398
I S S S P + NFWR +RCP+CP++ + R+SP ++ANQ+KRQAD F+++Y
Sbjct: 1356 IIGSSSGNVSNPNEGNDASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLY 1415
Query: 1399 YKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFC 1458
YKGL+MCDDE CKY+T S+NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC
Sbjct: 1416 YKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFC 1475
Query: 1459 HLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
+++D R +EK++ A++P EKE + + LA VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1476 YVVDATRCLEKLDQKARLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1534
>UNIPROTKB|Q0JHE4 [details] [associations]
symbol:Os01g0868300 "DNA polymerase" species:39947 "Oryza
sativa Japonica Group" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 EMBL:AP008207 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 KO:K02320 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 TIGRFAMs:TIGR00592
RefSeq:NP_001044920.1 UniGene:Os.47313 STRING:Q0JHE4 GeneID:4325052
KEGG:osa:4325052 Gramene:Q0JHE4 ProtClustDB:CLSN2686901
Uniprot:Q0JHE4
Length = 1244
Score = 4343 (1533.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 835/1247 (66%), Positives = 995/1247 (79%)
Query: 285 LNAKISTEKD---PLLSATAGWKEVSG-GNMVLDEGKSGLNC-----QESEFEVDDDGSL 335
LNAKI TE + SATAGW ++ G G+ EG N + SEFE+ D G+L
Sbjct: 6 LNAKIKTEDSRNGDMASATAGWMKICGDGDNAGGEGAVAANSNTGVDESSEFELKD-GAL 64
Query: 336 PFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIM 395
PFYILDA+E+ GAN GT+YLFGKV+ G HSCCVVVKNMQRC+YAIP+ +F D I
Sbjct: 65 PFYILDAYEEPFGANSGTVYLFGKVEVGKRFHSCCVVVKNMQRCIYAIPSSSIFPRDTIS 124
Query: 396 KLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIP 455
+LEK++ S SP + R L ++A GLK+EIA++L + NVSN+ ++PVKR YAF + ++P
Sbjct: 125 RLEKNSTTSDSSP-SLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLP 183
Query: 456 AGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
GE YVLKINYP+KDP LP DL+G++F +LLGT++SALEL L+KRK+KGPSWLSISKF +
Sbjct: 184 NGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLA 243
Query: 516 CPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSA 575
CPA QRVSWCK+E+TVDSPKDI V +S + EVPPV V A+NLKT+ N++ +V+EIVSA
Sbjct: 244 CPATQRVSWCKFEVTVDSPKDISVLMTSTTL-EVPPVVVAAVNLKTIINEKHNVHEIVSA 302
Query: 576 SVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLC 635
SV+CCH+ KID+PM + +W+K GMLSHFTV+RKL+G IFP+G +KE++DRN KAGSNVL
Sbjct: 303 SVICCHRVKIDSPMRSEDWQKRGMLSHFTVMRKLEGSIFPIGLSKESSDRNQKAGSNVLA 362
Query: 636 CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
ESSERALLNRLMIEL KLD DVLVGHNISGFDLDVLLHRAQ C+VPS+MWSKIGRL+RS
Sbjct: 363 LESSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVPSNMWSKIGRLRRS 422
Query: 696 EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
MP+L KG T++GSGASPGIMSCIAGRLLCDT+LCSRDLL+EVSYSLTQLA+TQL K+RK
Sbjct: 423 VMPRLTKGNTLYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERK 482
Query: 756 EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
EV PHD+ MFQ+ +L++L+EYGETDA L++ELMFHLSVLPLTRQLTNISGNLWGKTLQ
Sbjct: 483 EVSPHDIPPMFQSSGALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQ 542
Query: 816 GARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDN 875
G+RAQRVEYLLLHAF A+K+IVPDKF KE K++ N E +E D + D+
Sbjct: 543 GSRAQRVEYLLLHAFHARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEA---DPSIDD 599
Query: 876 DTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
+ H D K K+GP+YAGGLVLEPKKGLYDKY+LLLDFNSLYPSIIQEYNICFTTV+RS
Sbjct: 600 EGHHVDQGKTKKGPSYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSA 659
Query: 936 DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMY 995
DG VP+LP+SKTTGVLPELLK+LV+RRRMVK+W+KTASGLK QQ DIQQQALKLTANSMY
Sbjct: 660 DGNVPNLPASKTTGVLPELLKSLVERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMY 719
Query: 996 GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXX 1055
GCLGFSNSRFYAKPLAELIT QGREIL++TVDLVQNNLNLEVIYGDTDSIMIH+
Sbjct: 720 GCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDIS 779
Query: 1056 XXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGL 1115
VIQEVNKKY+CLEIDLDG DG E IERKGL
Sbjct: 780 RAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL-DGSLRENIERKGL 838
Query: 1116 DMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITK 1175
DMVRRDWSLLSKE+GDFCL+QILS SC+DV+ESIH+SL++VQE MR GQ LEKY+ITK
Sbjct: 839 DMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITK 898
Query: 1176 TLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQR 1235
+LTK PE YPDAKNQPHVQVALRLKQ+GYS GCSAGDTVPYIIC +Q + S S GIAQR
Sbjct: 899 SLTKAPEDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQR 957
Query: 1236 ARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXX 1295
ARHP+ELK+ KWMIDIDYY SQQIHPVVSRLCASI+GTSP RLA+CLGLD SKFQ
Sbjct: 958 ARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRL 1017
Query: 1296 XXXXXXXXXXXLLFAVGDE-ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP 1354
LL + DE ERYRGCEPL LSCPSCS+TFDCP V S I S S S P
Sbjct: 1018 TESDNQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNP 1077
Query: 1355 ----ETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETC 1410
+ NFWR +RCP+CP++ + R+SP ++ANQ+KRQAD F+++YYKGL+MCDDE C
Sbjct: 1078 NEGNDASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGC 1137
Query: 1411 KYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKM 1470
KY+T S+NLR++GD+ERGT+CPNYPRCNG LVR+YTEADLY+QL+YFC+++D R +EK+
Sbjct: 1138 KYSTHSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKL 1197
Query: 1471 EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDIAISV 1517
+ A++P EKE + + LA VQ+IR+RCA+GWV+L D+AIS+
Sbjct: 1198 DQKARLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI 1244
Score = 39 (18.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 81 DGLGYGDEGQEEDWSVAGLPSSSDDESLDG 110
DG G EG S G+ SS+ E DG
Sbjct: 33 DGDNAGGEGAVAANSNTGVDESSEFELKDG 62
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 1236 (440.2 bits), Expect = 1.0e-190, Sum P(4) = 1.0e-190
Identities = 303/772 (39%), Positives = 434/772 (56%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P +HF V K + IFP F +E +N+K + ++ER LL + +++K+D
Sbjct: 567 QPPFQTHFCAVSKPNDCIFPYDFKEEIKKKNAK-----IEIAATERTLLGFFLAKIHKID 621
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
DV+VGHNI GFDL+VLL R VC+VP WSKIGRL+RS MPKL GR FG +
Sbjct: 622 PDVVVGHNIYGFDLEVLLQRINVCKVPH--WSKIGRLRRSNMPKLG-GRGGFGERNA--- 675
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L L +R + P ++ ++ L+ +
Sbjct: 676 -AC--GRMICDVEISAKELIRCKSYHLSELVHQILKTERVTILPEEIRNLYSDSPHLLFM 732
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E TDA +++M L+VLPL Q+TNISGN+ +T+ G R++R E+LLLHAF K Y
Sbjct: 733 LENTWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDY 792
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
IVPDK + K + + ED+N ++ + A + D + G Y +
Sbjct: 793 IVPDKQVFKKPLQKLVDE-DEDFEDQNKSKIGKKKAAYAGGLVL-DPKVG----FYDKFI 846
Query: 896 VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTGVLPEL 954
+L LY ++ +FN + ++ + + E + +P LP S G+LP+
Sbjct: 847 LLLDFNSLYPS--IIQEFNICFTTVQRLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKE 904
Query: 955 LKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
++ LV+RRR VK MK L +Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA
Sbjct: 905 IRKLVERRRQVKQLMKQPDLNPDLYLQY-DIRQKALKLTANSMYGCLGFSYSRFYAKPLA 963
Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKK 1071
L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ + EVNK
Sbjct: 964 ALVTHKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKL 1022
Query: 1072 YKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
YK LEID+DG + DG E KGLD+VRRDW L+KE G
Sbjct: 1023 YKLLEIDIDGVFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETG 1082
Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
++ + QILS++ + +VE+I L+++ E++ +GQ+ + ++ I K LTK P+ YPD K+
Sbjct: 1083 NYVIGQILSDQPRDIIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQDYPDKKSL 1142
Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
PHV VA+ + G AGDTV YIIC GS++ +QRA P++L+K D
Sbjct: 1143 PHVHVAMWINSQG-GRKVKAGDTVSYIIC-----QDGSNLSASQRAYAPEQLQKQDNL-T 1195
Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXL--L 1308
ID YY SQQIHPVV+R+C IEG +A LGLDPS+F+ +
Sbjct: 1196 IDTQYYLSQQIHPVVARICEPIEGIDSVLIATWLGLDPSQFRVHHHYHKDEENDALVGGP 1255
Query: 1309 FAVGDEERYRGCEPLILSCPSCSST--FDCPAVCSSICMSVS-EKPSKPETE 1357
+ DEE+YR CE C C + +D CS + S ++ SK E E
Sbjct: 1256 AQLTDEEKYRDCERFKFCCLKCGTENIYDNVFDCSGRFIEPSLQRCSKSECE 1307
Score = 502 (181.8 bits), Expect = 1.0e-190, Sum P(4) = 1.0e-190
Identities = 128/355 (36%), Positives = 194/355 (54%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
+DD L FY LDA+E + G ++LFGKV ++ +T+ SCCV VKN++R VY +P
Sbjct: 326 NDDQVLRFYWLDAYED-QYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVYLLPR-- 382
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
+T+ + K+ E + ++ M K+ D + K +I + V++ Y
Sbjct: 383 --ETEMDLSSGKETE-TPVTIMNVFKEFND-CISPKYKIMK---------FKSKKVEKYY 429
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++PA Y L++ Y + P LP DLKGE F GT++S+LEL L+ RK+KGP W
Sbjct: 430 AFEIPDVPAKSEY-LEVKYSAEYPRLPQDLKGETFSHAFGTNTSSLELLLMSRKIKGPCW 488
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L I + P+ Q VSWCK E P + V K + PP+ V + ++KT+ N +
Sbjct: 489 LEIK--NPQPSNQSVSWCKVEAVAMKPGLVNVV---KDLPPPPPLVVMSFSMKTIQNPKT 543
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEIV+ + + K +D +P +HF V K + IFP F +E +N+
Sbjct: 544 HQNEIVAMAALIHQKFPLDKAP-----PQPPFQTHFCAVSKPNDCIFPYDFKEEIKKKNA 598
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K + ++ER LL + +++K+D DV+VGHNI GFDL+VLL R VC+VP
Sbjct: 599 K-----IEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINVCKVP 648
Score = 259 (96.2 bits), Expect = 1.8e-71, Sum P(4) = 1.8e-71
Identities = 86/299 (28%), Positives = 136/299 (45%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA P++L+K D ID YY SQQIHPVV+R+C IEG +A LGL
Sbjct: 1173 GSNLSASQRAYAPEQLQKQDNL-TIDTQYYLSQQIHPVVARICEPIEGIDSVLIATWLGL 1231
Query: 1287 DPSKFQXXXXXXXXXXXXXXL--LFAVGDEERYRGCEPLILSCPSCSST--FDCPAVCSS 1342
DPS+F+ + + DEE+YR CE C C + +D CS
Sbjct: 1232 DPSQFRVHHHYHKDEENDALVGGPAQLTDEEKYRDCERFKFCCLKCGTENIYDNVFDCSG 1291
Query: 1343 ICMSVS-EKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
+ S ++ SK E E P V+ + ++R ++ YY G
Sbjct: 1292 RFIEPSLQRCSKSECEE--------PPFNHVVQMNN----KLLLDIRR----YLKKYYNG 1335
Query: 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHL 1460
++C+D TC+ T L L + G +C C ++R +Y++ LY QL ++ ++
Sbjct: 1336 WLICEDPTCQNRTRRLPLSF---SRSGPICQ---ACRKAILRPEYSDKALYTQLCFYRYI 1389
Query: 1461 LDTQRGIEKM------EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
D + +K+ E + PL KE+++ STV + +Y V L +
Sbjct: 1390 FDVEYATDKVITEEDREFVRRKPLRKEVSE---AYRKLKSTVDKCLSLSSYSEVNLGKL 1445
Score = 121 (47.7 bits), Expect = 1.0e-190, Sum P(4) = 1.0e-190
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +YD + E++Y +V R+++ +IVDDDG+GY ++G+E D
Sbjct: 11 YEVEEFTGVYDEIDEEQYSKIVRERQDD--DWIVDDDGIGYVEDGREI------FDEDLD 62
Query: 105 DESLDGQRSIKKQRIEKRGKKENNQNV-RKPNPSLTAAAAMMGKQ 148
D++L + K + GKK ++V KPN + A GK+
Sbjct: 63 DDALGSSKKGKTGKTSTIGKKNVKKSVVAKPNTIKSMFIASAGKK 107
Score = 60 (26.2 bits), Expect = 7.2e-133, Sum P(3) = 7.2e-133
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 323 QESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYA 382
Q+ ++ VDDDG Y+ D E + ++ L G K G T + + KN+++ V A
Sbjct: 36 QDDDWIVDDDGI--GYVEDGRE-IFDEDLDDDAL-GSSKKGKTGKTSTIGKKNVKKSVVA 91
Query: 383 IPN 385
PN
Sbjct: 92 KPN 94
Score = 46 (21.3 bits), Expect = 8.1e-23, Sum P(5) = 8.1e-23
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 496 FLVKRKVKGPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
++ K+++KG L I + C A + ++ +I D P+DI V + + + E+
Sbjct: 1058 YVTKQELKG---LDIVRRDWCDLAKETGNYVIGQILSDQPRDIIVENIQRRLIEI 1109
Score = 42 (19.8 bits), Expect = 2.5e-142, Sum P(4) = 2.5e-142
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 386 GPLFQTDEIMKLEKDAEESRISPMAFRKK 414
G + +T E +K +K+ E+ + + +KK
Sbjct: 254 GAVPETAETLKRDKEVEKKEMEQLESKKK 282
Score = 40 (19.1 bits), Expect = 1.0e-190, Sum P(4) = 1.0e-190
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 323 QESEFEVDDDGSLPFYILDAHEQLSGANMGTL 354
+E E DD G + F D E + MG +
Sbjct: 225 EEKAIEDDDQGMMDFDDEDFDEPMEAELMGAV 256
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 1181 (420.8 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 289/745 (38%), Positives = 409/745 (54%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
KP +HF VV K IFP F + +N + ++ER LL + +++KLD
Sbjct: 583 KPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMEVE-----VAATERTLLGFFLAKVHKLD 637
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D+LVGHNI GF+L+VLL R C+VP WSKIGRL+RS MPKL GS + G
Sbjct: 638 PDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL-------GSRSGFGE 688
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+ GR++CD + ++L+ SY L++L + L +R + ++ M+ L+ L
Sbjct: 689 RNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYL 748
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 749 LEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 808
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR--KGKRGPAYAG 893
IVPDK + K + G ED ++ TN+ ++ K G Y
Sbjct: 809 IVPDKQIF------RKPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVG-FYDK 861
Query: 894 GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT-GVLP 952
++L LY ++ +FN + ++ + + E +P LP G+LP
Sbjct: 862 FILLLDFNSLYPS--IIQEFNICFTTVQRVASETLKATEDEEQEQIPELPDPNLDMGILP 919
Query: 953 ELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
++ LV+RR+ VK MK L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKP
Sbjct: 920 REIRKLVERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKP 978
Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVN 1069
LA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EVN
Sbjct: 979 LAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVN 1037
Query: 1070 KKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
K YK LEID+DG + DG E KGLD+VRRDW L+K+
Sbjct: 1038 KLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKD 1097
Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD K
Sbjct: 1098 TGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKK 1157
Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
+ PHV VAL + G AGDTV Y+IC GS++ QRA P++L+K D
Sbjct: 1158 SLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLPATQRAYAPEQLQKQDNL 1211
Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLL 1308
ID YY +QQIHPVV+R+C I+G +A LGLD ++F+
Sbjct: 1212 -AIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLGLDSTQFRVHQYHKDEENDALLGG 1270
Query: 1309 FA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+Y+ CE CPSC +
Sbjct: 1271 PAQLTDEEKYKDCEKFKCLCPSCGT 1295
Score = 476 (172.6 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 120/355 (33%), Positives = 190/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
DD+ FY LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 343 DDEQVFQFYWLDAYEDPYN-QPGVVFLFGKVWVESAKTHVSCCVMVKNIERTLYFLPRE- 400
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + +P+ ++DV ++I+ + + + IV ++ Y
Sbjct: 401 -------MKIDLNTGKETATPIT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNY 446
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP +LKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 447 AFEIPDVPEKSEY-LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 505
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P +SWCK+E P + V K V+ PP+ V + ++KT+ N +
Sbjct: 506 LEVKNPQLLNQP--ISWCKFEAMALKPDLVNVI---KDVSP-PPLVVMSFSMKTMQNVQN 559
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
+EI++ + + H +D KP +HF VV K IFP F + +N
Sbjct: 560 HQHEIIAMAALVHHNFPLDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNM 614
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
+ ++ER LL + +++KLD D+LVGHNI GF+L+VLL R C+VP
Sbjct: 615 EVE-----VAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVP 664
Score = 110 (43.8 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDLTSVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLD--GQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQ 148
D++LD G+ S K + R K +V KPN A GK+
Sbjct: 107 DDALDTCGEGSDGKAHRKDR-KDVKKPSVTKPNNIKAMFIASAGKK 151
Score = 105 (42.0 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQ 1453
+ YY G ++C++ TC+ L L + G +CP C ++R +Y++ LY Q
Sbjct: 1345 IKKYYDGWLICEEPTCRNRIRRLPLHF---SRNGPLCP---ACMKAVLRPEYSDKSLYTQ 1398
Query: 1454 LTYFCHLLDTQRGIEKMEISAKIPLEKE 1481
L ++ ++ D +EK+ K L+K+
Sbjct: 1399 LCFYRYIFDADCALEKLPEHEKDKLKKQ 1426
Score = 49 (22.3 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP--EAYPDAKNQP 1191
L L + SC D+ + NS + + + S + L K + + + +AY D NQP
Sbjct: 304 LDSFLPDVSCWDIDQKDENSFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQP 363
Query: 1192 HV 1193
V
Sbjct: 364 GV 365
Score = 37 (18.1 bits), Expect = 3.4e-180, Sum P(4) = 3.4e-180
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 1181 (420.8 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 289/745 (38%), Positives = 409/745 (54%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
KP +HF VV K IFP F + +N + ++ER LL + +++KLD
Sbjct: 583 KPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNMEVE-----VAATERTLLGFFLAKVHKLD 637
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D+LVGHNI GF+L+VLL R C+VP WSKIGRL+RS MPKL GS + G
Sbjct: 638 PDILVGHNICGFELEVLLQRINECKVP--FWSKIGRLRRSNMPKL-------GSRSGFGE 688
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+ GR++CD + ++L+ SY L++L + L +R + ++ M+ L+ L
Sbjct: 689 RNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYL 748
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 749 LEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 808
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR--KGKRGPAYAG 893
IVPDK + K + G ED ++ TN+ ++ K G Y
Sbjct: 809 IVPDKQIF------RKPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVG-FYDK 861
Query: 894 GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT-GVLP 952
++L LY ++ +FN + ++ + + E +P LP G+LP
Sbjct: 862 FILLLDFNSLYPS--IIQEFNICFTTVQRVASETLKATEDEEQEQIPELPDPNLDMGILP 919
Query: 953 ELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
++ LV+RR+ VK MK L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKP
Sbjct: 920 REIRKLVERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKP 978
Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVN 1069
LA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EVN
Sbjct: 979 LAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVN 1037
Query: 1070 KKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
K YK LEID+DG + DG E KGLD+VRRDW L+K+
Sbjct: 1038 KLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKD 1097
Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD K
Sbjct: 1098 TGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKK 1157
Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
+ PHV VAL + G AGDTV Y+IC GS++ QRA P++L+K D
Sbjct: 1158 SLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLPATQRAYAPEQLQKQDNL 1211
Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLL 1308
ID YY +QQIHPVV+R+C I+G +A LGLD ++F+
Sbjct: 1212 -AIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLGLDSTQFRVHQYHKDEENDALLGG 1270
Query: 1309 FA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+Y+ CE CPSC +
Sbjct: 1271 PAQLTDEEKYKDCEKFKCLCPSCGT 1295
Score = 476 (172.6 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 120/355 (33%), Positives = 190/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
DD+ FY LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 343 DDEQVFQFYWLDAYEDPYN-QPGVVFLFGKVWVESAKTHVSCCVMVKNIERTLYFLPRE- 400
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + +P+ ++DV ++I+ + + + IV ++ Y
Sbjct: 401 -------MKIDLNTGKETATPIT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNY 446
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP +LKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 447 AFEIPDVPEKSEY-LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 505
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P +SWCK+E P + V K V+ PP+ V + ++KT+ N +
Sbjct: 506 LEVKNPQLLNQP--ISWCKFEAMALKPDLVNVI---KDVSP-PPLVVMSFSMKTMQNVQN 559
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
+EI++ + + H +D KP +HF VV K IFP F + +N
Sbjct: 560 HQHEIIAMAALVHHNFPLDKAP-----PKPPFQTHFCVVSKPKDCIFPCAFKEVIKKKNM 614
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
+ ++ER LL + +++KLD D+LVGHNI GF+L+VLL R C+VP
Sbjct: 615 EVE-----VAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVP 664
Score = 110 (43.8 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDLTSVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLD--GQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQ 148
D++LD G+ S K + R K +V KPN A GK+
Sbjct: 107 DDALDTCGEGSDGKAHRKDR-KDVKKPSVTKPNNIKAMFIASAGKK 151
Score = 105 (42.0 bits), Expect = 7.1e-188, Sum P(4) = 7.1e-188
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQ 1453
+ YY G ++C++ TC+ L L + G +CP C ++R +Y++ LY Q
Sbjct: 1345 IKKYYDGWLICEEPTCRNRIRRLPLHF---SRNGPLCP---ACMKAVLRPEYSDKSLYTQ 1398
Query: 1454 LTYFCHLLDTQRGIEKMEISAKIPLEKE 1481
L ++ ++ D +EK+ K L+K+
Sbjct: 1399 LCFYRYIFDADCALEKLPEHEKDKLKKQ 1426
Score = 49 (22.3 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP--EAYPDAKNQP 1191
L L + SC D+ + NS + + + S + L K + + + +AY D NQP
Sbjct: 304 LDSFLPDVSCWDIDQKDENSFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQP 363
Query: 1192 HV 1193
V
Sbjct: 364 GV 365
Score = 37 (18.1 bits), Expect = 3.4e-180, Sum P(4) = 3.4e-180
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 1221 (434.9 bits), Expect = 5.5e-186, Sum P(4) = 5.5e-186
Identities = 298/743 (40%), Positives = 420/743 (56%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P +HF VV K + +FP F K+A + K G ++ +ERALL + +++K+D
Sbjct: 585 RPPFQTHFCVVSKPNDCVFPYDF-KDAVRK--KNG--IVEIAGTERALLGFFLAKMHKID 639
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
DVLVGH+I GFDL+VLL R VC+VP WSKIGRL+R+ MPKL GR+ F ++
Sbjct: 640 PDVLVGHDIFGFDLEVLLQRINVCKVPH--WSKIGRLRRANMPKLG-GRSGFAEKSA--- 693
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GRL+CD + +++L+R SY+LT+L L +R V P ++ + L+ L
Sbjct: 694 -TC--GRLVCDIEISAKELIRCKSYNLTELVSQILKAERPVVPPENIRNFYSDSTHLLYL 750
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E DA L +++M L+VLPL Q+TNI+GN+ +TL G R++R EYLLLHAF + +
Sbjct: 751 LELTWMDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFHERDF 810
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
IVPDK + K+ + G + T + A + D + G Y +
Sbjct: 811 IVPDK-QFFKKAQQDLGEDEEGDSGKGKSNKTRKKAAYAGGLVL-DPKVG----FYDKFI 864
Query: 896 VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTGVLPEL 954
+L LY ++ +FN + ++ + E D +P LP S G+LP+
Sbjct: 865 LLLDFNSLYPS--IIQEFNICFTTVERGATNTRKKTEEDEDE-IPELPDQSLEMGILPKE 921
Query: 955 LKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
++ LV+RRR VK MK L +Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA
Sbjct: 922 IRKLVERRRQVKQLMKEPDLNPDLYLQY-DIRQKALKLTANSMYGCLGFSFSRFYAKPLA 980
Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKK 1071
L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EVNK
Sbjct: 981 ALVTHKGREILMHTKEMVQR-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKL 1039
Query: 1072 YKCLEIDLDGXXXXXXXXXXXXXXXXXXQFK-DGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
YK LEID+DG + + DG E KGLD+VRRDW L+KE G
Sbjct: 1040 YKLLEIDIDGVFKSLLLLKKKKYAALMVEPQGDGKYTTKQELKGLDIVRRDWCDLAKECG 1099
Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
++ + QILS+++ + ++E+I L+++ E + +G + L + I K+LTK P+ YPD K+
Sbjct: 1100 NYVIGQILSDQNRDTIIENIQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQDYPDKKSL 1159
Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
PHV VAL + G AGDTV Y+IC GS++ +QRA ++L+K G
Sbjct: 1160 PHVHVALWINSQG-GKKVKAGDTVSYVIC-----QDGSNLAASQRAYTLEQLQKQPGL-N 1212
Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFA 1310
+D YY SQQ+HPVV R+C IEG +A LGLDPS F+ A
Sbjct: 1213 LDTQYYLSQQVHPVVGRICEPIEGIDAVLIATWLGLDPSHFRAQQQQREDEADDFLGAPA 1272
Query: 1311 -VGDEERYRGCEPLILSCPSCSS 1332
+ DEERYR CE +CP C +
Sbjct: 1273 QLTDEERYRDCERFTFTCPDCGT 1295
Score = 394 (143.8 bits), Expect = 5.5e-186, Sum P(4) = 5.5e-186
Identities = 96/241 (39%), Positives = 140/241 (58%)
Query: 442 PVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRK 501
PV + YAF +IP+ Y L++ Y + P LP+DLKG F + GT++S+LE FL+ RK
Sbjct: 443 PVTKNYAFEIPDIPSQSEY-LEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEHFLLNRK 501
Query: 502 VKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKT 561
++GP WL ++ P +SWCK E V D+ S K ++ PP+ V +I+LKT
Sbjct: 502 IRGPCWLDVTTPQLSNQP--ISWCKVE-AVAQKSDL--ISVVKDLSP-PPLVVMSISLKT 555
Query: 562 VFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKE 621
V N + NEIVS + + H +D +P +HF VV K + +FP F K+
Sbjct: 556 VQNPKTHQNEIVSIAALVHHTFPLDKAP-----PRPPFQTHFCVVSKPNDCVFPYDF-KD 609
Query: 622 ATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
A + K G ++ +ERALL + +++K+D DVLVGH+I GFDL+VLL R VC+V
Sbjct: 610 AVRK--KNG--IVEIAGTERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINVCKV 665
Query: 682 P 682
P
Sbjct: 666 P 666
Score = 246 (91.7 bits), Expect = 2.2e-66, Sum P(4) = 2.2e-66
Identities = 72/246 (29%), Positives = 113/246 (45%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA ++L+K G +D YY SQQ+HPVV R+C IEG +A LGL
Sbjct: 1190 GSNLAASQRAYTLEQLQKQPGL-NLDTQYYLSQQVHPVVGRICEPIEGIDAVLIATWLGL 1248
Query: 1287 DPSKFQXXXXXXXXXXXXXXLLFA-VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
DPS F+ A + DEERYR CE +CP C + +I
Sbjct: 1249 DPSHFRAQQQQREDEADDFLGAPAQLTDEERYRDCERFTFTCPDCGT--------ENIYD 1300
Query: 1346 SVSEKP-SKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMM 1404
+V E S + + C P + + I N+++ + YY G ++
Sbjct: 1301 NVFEGTGSTLQLSLKSCCHVPCGGSPMDHQV------QIGNKLQLDIRRHIRRYYSGWLL 1354
Query: 1405 CDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQ 1464
C+D+ C+ L + + G +CP R L +Y+E LY QL+++ ++ D +
Sbjct: 1355 CEDQACRNRIRRLPIAF---SRSGPICPACLRST--LKPEYSEKALYNQLSFYRYIFDWE 1409
Query: 1465 RGIEKM 1470
I K+
Sbjct: 1410 YAINKV 1415
Score = 122 (48.0 bits), Expect = 5.5e-186, Sum P(4) = 5.5e-186
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQE---E--DWSVAGL 99
Y ++ IYD V E++Y +V R+++ +I+DDDG GY ++G+E E D G
Sbjct: 57 YEVEEFTSIYDEVDEEQYSKIVRERQDD--DWIIDDDGTGYVEDGREIFDEELDDDALGP 114
Query: 100 PSSSDDESLDGQRSIKKQRIEKRGKKEN---NQNVRKP 134
S + D ++++KK + K ++ N NV+KP
Sbjct: 115 KSKQAAKGGDSKKNVKKSSVSKPNSIKSMFMNSNVKKP 152
Score = 117 (46.2 bits), Expect = 5.5e-186, Sum P(4) = 5.5e-186
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 302 GWKEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPF--YILDAHEQLSGANMGTLYLFGK 359
GW+++ G + + ++ + DG + F Y LDA E G ++LFGK
Sbjct: 317 GWEKMEEGKPIETPVEVQVDSSQLPLVEGPDGDMVFRFYWLDAFEDQYN-QPGVVFLFGK 375
Query: 360 V--KAGSTHHSCCVVVKNMQRCVYAIP 384
V ++ H SCCV VKN++R +Y +P
Sbjct: 376 VWIESAEAHVSCCVAVKNIERTMYLLP 402
Score = 45 (20.9 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 637 ESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
E SE+AL N+L Y D + + ++G D
Sbjct: 1389 EYSEKALYNQLSFYRYIFDWEYAINKVLTGDD 1420
Score = 39 (18.8 bits), Expect = 3.6e-166, Sum P(3) = 3.6e-166
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ +DDDG+ Y+ D E
Sbjct: 82 QDDDWIIDDDGT--GYVEDGRE 101
Score = 38 (18.4 bits), Expect = 7.6e-29, Sum P(4) = 7.6e-29
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 496 FLVKRKVKGPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
+ K+++KG L I + C A + ++ +I D +D + + KH+ E+
Sbjct: 1075 YTTKQELKG---LDIVRRDWCDLAKECGNYVIGQILSDQNRDTIIENIQKHLIEI 1126
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 1242 (442.3 bits), Expect = 9.0e-186, Sum P(4) = 9.0e-186
Identities = 300/749 (40%), Positives = 434/749 (57%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P +HF V+ K + IFP F + +NS NV ++ER LL + +++K+D
Sbjct: 546 QPPFQTHFCVISKPNDCIFPYDFKEIIKSKNS----NVEIA-ATERTLLGFFLAKVHKID 600
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D++VGHNI GFDL+VLL R V +VP WSKIGRL+RS MPKL GR G +
Sbjct: 601 PDIIVGHNIYGFDLEVLLQRINVSKVPH--WSKIGRLRRSIMPKLG-GR----GGFAERN 653
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L L +R + P ++ M+ L+ +
Sbjct: 654 AAC--GRMICDVEISAKELIRCKSYHLSELVHQILKTERITIPPEEIRNMYSDSSHLLYM 711
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E TDA +++M L+VLPL Q+TNISGN+ +T+ G R++R E+LLLHAF + Y
Sbjct: 712 LENTWTDARFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYERDY 771
Query: 836 IVPDKFTYVK-ETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGG 894
IVPDK + K + K+ + + GVED+N ++ + A + D + G Y
Sbjct: 772 IVPDKQVFKKPQQKLVDE--DEGVEDQNKSKIGRKKAAYAGGLVL-DPKVG----FYDTF 824
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL---VPHLPS-SKTTGV 950
++L LY ++ +FN + ++ +E + +R+ DG+ +P LP S G+
Sbjct: 825 ILLLDFNSLYPS--IIQEFNICFTTVQRESS---DAQKRAEDGVQEEIPELPDPSLEMGI 879
Query: 951 LPELLKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
LP+ ++ LV+RRR VK MK L +Q DI+Q+ALKLTANSMYGCLGFS SRFYA
Sbjct: 880 LPKEIRKLVERRRQVKQLMKQPDLNPDLYLQY-DIRQKALKLTANSMYGCLGFSYSRFYA 938
Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQE 1067
KPLA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ + E
Sbjct: 939 KPLAALVTHKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKIKSE 997
Query: 1068 VNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLS 1126
VNK YK LEID+DG + DG E KGLD+VRRDW L+
Sbjct: 998 VNKLYKLLEIDIDGVFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLA 1057
Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD 1186
KE G++ + QILS++S + +VE+I L+++ E++ +G+V + ++ I K LTK P+ YPD
Sbjct: 1058 KETGNYVIGQILSDQSRDTIVENIQRRLIEIGENVINGRVPISQFEINKALTKDPQDYPD 1117
Query: 1187 AKNQPHVQVALRLK-QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
K+ PHV VA+ + Q G AGDTV Y+IC GS++ +QRA P++L+K
Sbjct: 1118 KKSLPHVHVAMWINSQEGRKV--KAGDTVSYVIC-----QDGSNLSASQRAYAPEQLQKQ 1170
Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXX 1305
+ +D YY SQQIHPVV+R+C I+G +A LGLDPS+F+
Sbjct: 1171 ENL-TVDTQYYLSQQIHPVVARICEPIDGIDSVLIATWLGLDPSQFKIHHHYHKDEENDA 1229
Query: 1306 XL--LFAVGDEERYRGCEPLILSCPSCSS 1332
L + DEE+YR CE SCP C +
Sbjct: 1230 LLGGPAQLTDEEKYRDCERFKFSCPRCGT 1258
Score = 465 (168.7 bits), Expect = 9.0e-186, Sum P(4) = 9.0e-186
Identities = 118/355 (33%), Positives = 190/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D D FY LDA+E + G ++LFGKV ++ T+ SCCV VKN++R +Y +P
Sbjct: 306 DGDQVFRFYWLDAYED-QYSQPGVVFLFGKVWIESAETYVSCCVTVKNIERIIYLLPRE- 363
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
Q D + K+ E ++ M ++ D +IA + + + V++ Y
Sbjct: 364 -MQMD--LTSGKETENP-VTMMNIYQEFND-------QIA---VKYKIMKFRSKKVEKNY 409
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++PA +Y L++ Y + P LP DLKGE F + GT++S+LEL L+ RK+KGPSW
Sbjct: 410 AFEIPDVPAKSDY-LEVRYSAEFPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKGPSW 468
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L I + P VSWCK E T P + + PP+ + +++++T+ N +
Sbjct: 469 LEIK--NPQPLSHPVSWCKVEATALKPDLVNIVKD----LPPPPLVIMSLSMRTIQNVKT 522
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
+E+++ + + + +D +P +HF V+ K + IFP F + +NS
Sbjct: 523 HQHEVMAVAALVHQRFCLDKAP-----PQPPFQTHFCVISKPNDCIFPYDFKEIIKSKNS 577
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
NV ++ER LL + +++K+D D++VGHNI GFDL+VLL R V +VP
Sbjct: 578 ----NVEIA-ATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINVSKVP 627
Score = 249 (92.7 bits), Expect = 9.8e-65, Sum P(4) = 9.8e-65
Identities = 79/294 (26%), Positives = 135/294 (45%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA P++L+K + +D YY SQQIHPVV+R+C I+G +A LGL
Sbjct: 1152 GSNLSASQRAYAPEQLQKQENL-TVDTQYYLSQQIHPVVARICEPIDGIDSVLIATWLGL 1210
Query: 1287 DPSKFQXXXXXXXXXXXXXXL--LFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSIC 1344
DPS+F+ L + DEE+YR CE SCP C + + ++
Sbjct: 1211 DPSQFKIHHHYHKDEENDALLGGPAQLTDEEKYRDCERFKFSCPRCGTE----NIYDNV- 1265
Query: 1345 MSVSEKPSKPETEYNFWRTLRCPK--CPEEVEAGRISPGMIANQVKRQADGFVSMYYKGL 1402
S K +P + +C K C E I + N++ ++ YY
Sbjct: 1266 FDGSGKLMEPSLQ-------QCSKKECDESPFNYTIQ---MNNKLLLDIRRYLKSYYNSW 1315
Query: 1403 MMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLL 1461
++C++ TC+ T L L ++ G +C C ++R +Y++ LY QL ++ ++
Sbjct: 1316 LICEEPTCQNRTRRLPLSF---SQNGALCQ---ACKKAILRPEYSDKALYTQLCFYRYIF 1369
Query: 1462 DTQRGIEKMEISA-KIPLEKELN-KIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
D ++K+ K ++++L V +TV + Y V L+ +
Sbjct: 1370 DVDYAMDKVITDQEKESMKRKLTINETEVYRKLKNTVDKFLSMSGYSEVNLSKL 1423
Score = 102 (41.0 bits), Expect = 9.0e-186, Sum P(4) = 9.0e-186
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 53 IYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQR 112
+Y+ V E +Y +V R+++ +IVDDDG+GY ++G+E +D+ L ++
Sbjct: 4 VYEEVDEAQYSKMVRERQDD--DWIVDDDGIGYVEDGREI------FDEDLEDDVLGSKK 55
Query: 113 SIKKQRIEKRGKKENNQNV-RKPNPSLTAAAAMMGKQ 148
K + KK ++V KPN + A GK+
Sbjct: 56 KGKGDKTSTNDKKNVKKSVVSKPNTIKSMFMASAGKK 92
Score = 45 (20.9 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 323 QESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYA 382
Q+ ++ VDDDG Y+ D E + ++ L G K G + KN+++ V +
Sbjct: 21 QDDDWIVDDDGI--GYVEDGRE-IFDEDLEDDVL-GSKKKGKGDKTSTNDKKNVKKSVVS 76
Query: 383 IPN 385
PN
Sbjct: 77 KPN 79
Score = 43 (20.2 bits), Expect = 9.0e-186, Sum P(4) = 9.0e-186
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 217 TNSTNSVKENSDLINNFVQIQNC 239
T +SVKE++ +++F+ +C
Sbjct: 254 TQQVDSVKEDASFLSSFLPDMSC 276
Score = 39 (18.8 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 55 DTVAEDEYDALVARRREEARGFIVDDDGLGYGD 87
D ED+ + + R++ G +V D +G+ D
Sbjct: 790 DEGVEDQNKSKIGRKKAAYAGGLVLDPKVGFYD 822
Score = 38 (18.4 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 1122 WSLLSKEVGDFCLSQILSERSCEDVV 1147
W+ + K+ D S++ + SC +V
Sbjct: 277 WTRMDKDETDLVASEVQVDPSCLPLV 302
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 1166 (415.5 bits), Expect = 3.0e-185, Sum P(4) = 3.0e-185
Identities = 286/745 (38%), Positives = 409/745 (54%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P +HF VV K IFP F + + +N K ++ER L+ + +++K+D
Sbjct: 580 EPPFQTHFCVVSKPKDCIFPCDFKEVISKKNMKVE-----IAATERTLIGFFLAKVHKID 634
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D+LVGHNI F+L+VLL R C+VP WSKIGRL+RS MPKL GS + G
Sbjct: 635 PDILVGHNICSFELEVLLQRINECKVP--YWSKIGRLRRSNMPKL-------GSRSGFGE 685
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+ GR++CD + +++L+ SY L++L + L +R + ++ M+ L+ L
Sbjct: 686 RNATCGRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSESSYLLYL 745
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 746 LEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 805
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR--KGKRGPAYAG 893
IVPDK + K + G ED ++ TN+ ++ K G Y
Sbjct: 806 IVPDKQIF------RKPQQKLGDEDEEIDGDTNKYKKGRKKATYAGGLVLDPKVG-FYDK 858
Query: 894 GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT-GVLP 952
++L LY ++ +FN + ++ + + E +P LP G+LP
Sbjct: 859 FILLLDFNSLYPS--IIQEFNICFTTVQRVTSEVQKATEDEEQEQIPELPDPNLEMGILP 916
Query: 953 ELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
++ LV+RR+ VK MK L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKP
Sbjct: 917 REIRKLVERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKP 975
Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVN 1069
LA L+T +GREIL T D+VQ +NLEVIYGDTDSIMI++ V EVN
Sbjct: 976 LAALVTYKGREILMHTKDMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVN 1034
Query: 1070 KKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
K YK LEID+D + DG E KGLD+VRRDW L+K+
Sbjct: 1035 KLYKLLEIDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKD 1094
Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD K
Sbjct: 1095 TGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDRK 1154
Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
+ PHV VAL + G AGDTV Y+IC GS++ QRA P++L+K D
Sbjct: 1155 SLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLTATQRAYAPEQLQKLDNL 1208
Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLL 1308
ID YY +QQIHPVV+R+C I+G +A LGLD ++F+
Sbjct: 1209 -AIDTQYYLAQQIHPVVARICEPIDGIDAVLIALWLGLDSTQFRVHQYHKDEENDALLGG 1267
Query: 1309 FA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+Y+ CE CPSC +
Sbjct: 1268 PAQLTDEEKYKDCEKFKCLCPSCGT 1292
Score = 463 (168.0 bits), Expect = 3.0e-185, Sum P(4) = 3.0e-185
Identities = 117/355 (32%), Positives = 189/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
DD+ FY LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 340 DDEQVFQFYWLDAYEDPYN-QPGVVFLFGKVWIESVKTHVSCCVMVKNIERTLYFLPRE- 397
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK + + + P+ ++DV ++I+ + + + IV ++ Y
Sbjct: 398 -------MKFDLNTGKETAIPVT----MKDVYEEFDSKISAKYKIMKFKSKIV---EKNY 443
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP +LKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 444 AFEIPDVPEKSEY-LEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 502
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P +SWCK+E+ P + V K V+ PP+ V + ++KT+ N +
Sbjct: 503 LEVKNPQLLNQP--ISWCKFEVMALKPDLVNVI---KDVSP-PPLVVMSFSMKTMQNVQN 556
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
+EI++ + + H +D +P +HF VV K IFP F + + +N
Sbjct: 557 HQHEIIAMAALVHHSFALDKAP-----PEPPFQTHFCVVSKPKDCIFPCDFKEVISKKNM 611
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K ++ER L+ + +++K+D D+LVGHNI F+L+VLL R C+VP
Sbjct: 612 KVE-----IAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVP 661
Score = 109 (43.4 bits), Expect = 3.0e-185, Sum P(4) = 3.0e-185
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDLTSVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLD--GQRSIKKQRIEKRGKKENNQNVRKPNPSLTAAAAMMGKQ 148
D++LD G+ S K + R K +V KPN A GK+
Sbjct: 107 DDALDTCGKGSDGKAHRKDR-KDVKKPSVTKPNNIKAMFIASAGKK 151
Score = 109 (43.4 bits), Expect = 3.0e-185, Sum P(4) = 3.0e-185
Identities = 33/124 (26%), Positives = 61/124 (49%)
Query: 1395 VSMYYKGLMMCDDETCKYTTCSLNLRL-IGDAERGTVCPNYPRCNGRLVR-KYTEADLYK 1452
+ YY G ++C++ TC CS RL + + G +CP C ++R +Y++ LY
Sbjct: 1342 IKKYYDGWLICEEPTC----CSRLRRLPLHFSRNGPLCPV---CMKAVLRPEYSDKSLYT 1394
Query: 1453 QLTYFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLND 1512
QL ++ ++ D +EK+ K L+K+ +R V V+ I E+ W ++
Sbjct: 1395 QLCFYRYIFDADCALEKLTEHEKDKLKKQFFPLR--VLQDYRKVKNIAEQFL-SWSGYSE 1451
Query: 1513 IAIS 1516
+ +S
Sbjct: 1452 VNLS 1455
Score = 42 (19.8 bits), Expect = 3.7e-44, Sum P(3) = 3.7e-44
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 727 TFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLME 774
T LC + + +L +L + + +K +K+ P VL+ ++ ++++ E
Sbjct: 1394 TQLCFYRYIFDADCALEKLTEHEKDKLKKQFFPLRVLQDYRKVKNIAE 1441
Score = 41 (19.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 1134 LSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPP--EAYPDAKNQP 1191
L L + SC D+ + + +VQ D S + L K + + + +AY D NQP
Sbjct: 303 LENFLPDVSCWDIDQDDESIPQEVQVD--SSNLPLVKGADDEQVFQFYWLDAYEDPYNQP 360
Query: 1192 HV 1193
V
Sbjct: 361 GV 362
Score = 37 (18.1 bits), Expect = 1.1e-177, Sum P(4) = 1.1e-177
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
Score = 37 (18.1 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 204 VSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEES 245
+ +N+ TN + V N VK + + ++I + D V +S
Sbjct: 1010 IMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEI-DIDAVFKS 1050
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 1215 (432.8 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 296/745 (39%), Positives = 417/745 (55%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
KP SHF VV K IFP F + +N K ++ER LL + +++K+D
Sbjct: 582 KPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----VAATERTLLGFFLAKVHKID 636
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D++VGHNI GF+L+VLL R VC+ P WSKIGRLKRS MPKL GR+ FG +
Sbjct: 637 PDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMPKLG-GRSGFGERNA--- 690
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L + L +R + ++ M+ L+ L
Sbjct: 691 -TC--GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYL 747
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 748 LEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 807
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR--KGKRGPAYAG 893
IVPDK + K + G ED ++ TN+ ++ K G Y
Sbjct: 808 IVPDKQIF------RKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVG-FYDK 860
Query: 894 GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTGVLP 952
++L LY ++ +FN + ++ + + E +P LP S G+LP
Sbjct: 861 FILLLDFNSLYPS--IIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSLEMGILP 918
Query: 953 ELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
++ LV+RR+ VK MK L I Q DI+Q+ALKLTANSMYGCLGFS SRFYAKP
Sbjct: 919 REIRKLVERRKQVKQLMKQQD-LNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKP 977
Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVN 1069
LA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EVN
Sbjct: 978 LAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVN 1036
Query: 1070 KKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
K YK LEID+DG + DG E KGLD+VRRDW L+K+
Sbjct: 1037 KLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKD 1096
Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD K
Sbjct: 1097 TGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKK 1156
Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
+ PHV VAL + G AGDTV Y+IC GS++ +QRA P++L+K D
Sbjct: 1157 SLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLTASQRAYAPEQLQKQDNL 1210
Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLL 1308
ID YY +QQIHPVV+R+C I+G +A LGLDP++F+
Sbjct: 1211 -TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDPTQFRVHHYHKDEENDALLGG 1269
Query: 1309 FA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+YR CE CP+C +
Sbjct: 1270 PAQLTDEEKYRDCERFKCPCPTCGT 1294
Score = 497 (180.0 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 124/355 (34%), Positives = 189/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D++ FY LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 342 DEEQVFHFYWLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE- 399
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + +P++ ++DV +IA + + + PV++ Y
Sbjct: 400 -------MKIDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNY 445
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 446 AFEIPDVPEKSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 504
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P VSWCK E P + V K V+ PP+ V A ++KT+ N +
Sbjct: 505 LEVKSPQLLNQP--VSWCKVEAMALKPDLVNVI---KDVSP-PPLVVMAFSMKTMQNAKN 558
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEI++ + + H +D KP SHF VV K IFP F + +N
Sbjct: 559 HQNEIIAMAALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNV 613
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K ++ER LL + +++K+D D++VGHNI GF+L+VLL R VC+ P
Sbjct: 614 KVE-----VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAP 663
Score = 268 (99.4 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
Identities = 83/293 (28%), Positives = 142/293 (48%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA P++L+K D ID YY +QQIHPVV+R+C I+G +A LGL
Sbjct: 1189 GSNLTASQRAYAPEQLQKQDNL-TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGL 1247
Query: 1287 DPSKFQXXXXXXXXXXXXXXLLFA-VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
DP++F+ A + DEE+YR CE CP+C + +I
Sbjct: 1248 DPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT--------ENIYD 1299
Query: 1346 SVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
+V + S + E + +R + C P ++S +I + ++R F+ YY G +
Sbjct: 1300 NVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV-QLSNKLIMD-IRR----FIKKYYDGWL 1352
Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT 1463
+C++ TC+ T L L+ + G +CP + L +Y++ LY QL ++ ++ D
Sbjct: 1353 ICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYRYIFDA 1407
Query: 1464 QRGIEKMEIS-AKIPLEKEL--NKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
+ +EK+ K L+K+ K+ +T ++ R Y V L+ +
Sbjct: 1408 ECALEKLTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKL 1460
Score = 111 (44.1 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDFTGVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLDGQRSIKKQRIEKRGKKENNQ-NVRKPNPSLTAAAAMMGKQ 148
D++LD K + + K+ + V KPN + A GK+
Sbjct: 107 DDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKK 151
Score = 39 (18.8 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 1134 LSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPP--EAYPDAKNQ 1190
L L + SC D+ + +S VQE + S + L K + + +AY D NQ
Sbjct: 303 LGSFLPDVSCWDIDQE-GDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQ 361
Query: 1191 PHV 1193
P V
Sbjct: 362 PGV 364
Score = 37 (18.1 bits), Expect = 3.5e-176, Sum P(3) = 3.5e-176
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 1215 (432.8 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 296/745 (39%), Positives = 417/745 (55%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
KP SHF VV K IFP F + +N K ++ER LL + +++K+D
Sbjct: 576 KPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNVKVE-----VAATERTLLGFFLAKVHKID 630
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D++VGHNI GF+L+VLL R VC+ P WSKIGRLKRS MPKL GR+ FG +
Sbjct: 631 PDIIVGHNIYGFELEVLLQRINVCKAPH--WSKIGRLKRSNMPKLG-GRSGFGERNA--- 684
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L + L +R + ++ M+ L+ L
Sbjct: 685 -TC--GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYL 741
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 742 LEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 801
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR--KGKRGPAYAG 893
IVPDK + K + G ED ++ TN+ ++ K G Y
Sbjct: 802 IVPDKQIF------RKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVG-FYDK 854
Query: 894 GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTGVLP 952
++L LY ++ +FN + ++ + + E +P LP S G+LP
Sbjct: 855 FILLLDFNSLYPS--IIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSLEMGILP 912
Query: 953 ELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKP 1009
++ LV+RR+ VK MK L I Q DI+Q+ALKLTANSMYGCLGFS SRFYAKP
Sbjct: 913 REIRKLVERRKQVKQLMKQQD-LNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKP 971
Query: 1010 LAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVN 1069
LA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EVN
Sbjct: 972 LAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVN 1030
Query: 1070 KKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKE 1128
K YK LEID+DG + DG E KGLD+VRRDW L+K+
Sbjct: 1031 KLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKD 1090
Query: 1129 VGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAK 1188
G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD K
Sbjct: 1091 TGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKK 1150
Query: 1189 NQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGK 1248
+ PHV VAL + G AGDTV Y+IC GS++ +QRA P++L+K D
Sbjct: 1151 SLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLTASQRAYAPEQLQKQDNL 1204
Query: 1249 WMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLL 1308
ID YY +QQIHPVV+R+C I+G +A LGLDP++F+
Sbjct: 1205 -TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDPTQFRVHHYHKDEENDALLGG 1263
Query: 1309 FA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+YR CE CP+C +
Sbjct: 1264 PAQLTDEEKYRDCERFKCPCPTCGT 1288
Score = 497 (180.0 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 124/355 (34%), Positives = 189/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D++ FY LDA+E G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 336 DEEQVFHFYWLDAYEDQYN-QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE- 393
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + +P++ ++DV +IA + + + PV++ Y
Sbjct: 394 -------MKIDLNTGKETGTPIS----MKDVYEEFDEKIATKY---KIMKFKSKPVEKNY 439
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 440 AFEIPDVPEKSEY-LEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 498
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P VSWCK E P + V K V+ PP+ V A ++KT+ N +
Sbjct: 499 LEVKSPQLLNQP--VSWCKVEAMALKPDLVNVI---KDVSP-PPLVVMAFSMKTMQNAKN 552
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEI++ + + H +D KP SHF VV K IFP F + +N
Sbjct: 553 HQNEIIAMAALVHHSFALDKAA-----PKPPFQSHFCVVSKPKDCIFPYAFKEVIEKKNV 607
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K ++ER LL + +++K+D D++VGHNI GF+L+VLL R VC+ P
Sbjct: 608 KVE-----VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAP 657
Score = 268 (99.4 bits), Expect = 1.0e-71, Sum P(3) = 1.0e-71
Identities = 83/293 (28%), Positives = 142/293 (48%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA P++L+K D ID YY +QQIHPVV+R+C I+G +A LGL
Sbjct: 1183 GSNLTASQRAYAPEQLQKQDNL-TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGL 1241
Query: 1287 DPSKFQXXXXXXXXXXXXXXLLFA-VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
DP++F+ A + DEE+YR CE CP+C + +I
Sbjct: 1242 DPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT--------ENIYD 1293
Query: 1346 SVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
+V + S + E + +R + C P ++S +I + ++R F+ YY G +
Sbjct: 1294 NVFDG-SGTDMEPSLYRCSNIDCKASPLTFTV-QLSNKLIMD-IRR----FIKKYYDGWL 1346
Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDT 1463
+C++ TC+ T L L+ + G +CP + L +Y++ LY QL ++ ++ D
Sbjct: 1347 ICEEPTCRNRTRHLPLQF---SRTGPLCPACMKAT--LQPEYSDKSLYTQLCFYRYIFDA 1401
Query: 1464 QRGIEKMEIS-AKIPLEKEL--NKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
+ +EK+ K L+K+ K+ +T ++ R Y V L+ +
Sbjct: 1402 ECALEKLTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKL 1454
Score = 111 (44.1 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 49 YEVEDFTGVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 100
Query: 105 DESLDGQRSIKKQRIEKRGKKENNQ-NVRKPNPSLTAAAAMMGKQ 148
D++LD K + + K+ + V KPN + A GK+
Sbjct: 101 DDALDADEKGKDGKARNKDKRNVKKLAVTKPNNIKSMFIACAGKK 145
Score = 39 (18.8 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 1134 LSQILSERSCEDVVESIHNSLMKVQE-DMRSGQVALEKYVITKTLTKPP--EAYPDAKNQ 1190
L L + SC D+ + +S VQE + S + L K + + +AY D NQ
Sbjct: 297 LGSFLPDVSCWDIDQE-GDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQ 355
Query: 1191 PHV 1193
P V
Sbjct: 356 PGV 358
Score = 37 (18.1 bits), Expect = 3.5e-176, Sum P(3) = 3.5e-176
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 74 QDDDWIVDDDGI--GYVEDGRE 93
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 1234 (439.4 bits), Expect = 3.8e-183, Sum P(3) = 3.8e-183
Identities = 300/744 (40%), Positives = 426/744 (57%)
Query: 597 PGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDS 656
P +HF V+ K + IFP F + +N+K + ++ER LL + +++K+D
Sbjct: 549 PPFQTHFCVISKPNDCIFPYDFKEIVKTKNAK-----IEIATTERTLLGFFLAKVHKIDP 603
Query: 657 DVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIM 716
DV+VGHNI GFDL++LL R C+VP WSKIGRL+RS MPKL GR SG +
Sbjct: 604 DVIVGHNIYGFDLELLLQRINFCKVPH--WSKIGRLRRSNMPKLG-GR----SGFAEKNA 656
Query: 717 SCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELI 776
+C GR++CD + +++L+R SY LT+L L +R V P ++ M+ L+ ++
Sbjct: 657 TC--GRMICDVEISAKELIRCKSYHLTELVNQILKVERITVPPEEIRNMYSDPRQLLYMV 714
Query: 777 EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
E TDA +++M L+VLPL Q+TNI+GN+ +TL G RA+R EYLLLHAF K +I
Sbjct: 715 ENTWTDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGRAERNEYLLLHAFYEKNFI 774
Query: 837 VPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV 896
VPDK + K K ++ + D+N + + A + + K G Y ++
Sbjct: 775 VPDKQLFKKTQKQLEEDEDFE-GDQNKSKTGRKKAAYSGGLV----LEPKVG-FYDKFIL 828
Query: 897 LEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLP-SSKTTGVLPELL 955
L LY ++ +FN + ++ + + E + +P LP SS G+LP+ +
Sbjct: 829 LLDFNSLYPS--IIQEFNICFTTVHRVSSSLHKNTEDGEEEEIPELPDSSLDMGILPKEI 886
Query: 956 KNLVQRRRMVKTWMKTA---SGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAE 1012
+ LV+RRR VK MK S L +Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA
Sbjct: 887 RKLVERRRQVKQLMKQPDLNSDLYLQY-DIRQKALKLTANSMYGCLGFSYSRFYAKPLAA 945
Query: 1013 LITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKY 1072
L+T +GREIL T ++V+ +NLEVIYGDTDSIMI++ + EVNK Y
Sbjct: 946 LVTFKGREILMHTKEMVEK-MNLEVIYGDTDSIMINTNITNLEEVFKLGNKIKSEVNKLY 1004
Query: 1073 KCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGD 1131
K LEID+DG + DG E KGLD+VRRDW L+KE G+
Sbjct: 1005 KLLEIDIDGIFKSLLLLKKKKYAALVVEPTGDGKYITKQELKGLDIVRRDWCDLAKETGN 1064
Query: 1132 FCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQP 1191
+ +SQILS++ + +VE+I L+++ E++ +G V ++++ I K LTK P+ YPD K+ P
Sbjct: 1065 YIISQILSDQFRDVIVENIQRRLIQIGENVVNGSVPIKQFEINKALTKDPQDYPDKKSLP 1124
Query: 1192 HVQVALRLK-QSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
HV VAL + Q G AGDTV Y+IC GS++ +QRA P++LKK +
Sbjct: 1125 HVHVALWINSQEGRKL--KAGDTVSYVIC-----QDGSNLSASQRAYAPEQLKKQENL-A 1176
Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFA 1310
ID YY SQQIHPVV+R+C I+G +A LGLDPS+F+ L
Sbjct: 1177 IDTQYYLSQQIHPVVARICEPIDGIDSVLIAAWLGLDPSQFKVYHHYHKDEENDDLLGGP 1236
Query: 1311 VG--DEERYRGCEPLILSCPSCSS 1332
V DEE+Y+ CE +CP C +
Sbjct: 1237 VQLTDEEKYKDCERFKFACPKCGT 1260
Score = 463 (168.0 bits), Expect = 3.8e-183, Sum P(3) = 3.8e-183
Identities = 116/349 (33%), Positives = 185/349 (53%)
Query: 337 FYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
FY LDA+E G ++LFGKV ++ ++ SCCV VKN++R +Y +P
Sbjct: 315 FYWLDAYEDQYN-QPGVVFLFGKVWIESAKSYVSCCVTVKNIERTIYLLPRES------- 366
Query: 395 MKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
+++K + + +P+ + DV +A + + Y V++ YAF ++
Sbjct: 367 -RIDKCSGKETENPVT----MMDVYQEFNDHVAEKF---KIMKYKSKKVEKNYAFEIPDV 418
Query: 455 PAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFS 514
PA +Y L++ Y + LP DLKGE F + GT++S+LEL L+ RK+KGP WL I
Sbjct: 419 PAKSDY-LEVRYSAEYSRLPQDLKGETFSHVFGTNTSSLELLLMNRKIKGPGWLEIKNPQ 477
Query: 515 SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVS 574
+ Q VSWCK E+ P + V PP+ + ++++KTV N + NEI+
Sbjct: 478 L--SSQAVSWCKVELVALKPAFVNVVKD----LPPPPLVIMSLSMKTVQNTKTHQNEIMV 531
Query: 575 ASVVCCHKAKID-TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNV 633
+ + HK +D P + P +HF V+ K + IFP F + +N+K
Sbjct: 532 ITALVHHKFCLDKAPPV------PPFQTHFCVISKPNDCIFPYDFKEIVKTKNAK----- 580
Query: 634 LCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
+ ++ER LL + +++K+D DV+VGHNI GFDL++LL R C+VP
Sbjct: 581 IEIATTERTLLGFFLAKVHKIDPDVIVGHNIYGFDLELLLQRINFCKVP 629
Score = 265 (98.3 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
Identities = 85/296 (28%), Positives = 136/296 (45%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA P++LKK + ID YY SQQIHPVV+R+C I+G +A LGL
Sbjct: 1154 GSNLSASQRAYAPEQLKKQENL-AIDTQYYLSQQIHPVVARICEPIDGIDSVLIAAWLGL 1212
Query: 1287 DPSKFQXXXXXXXXXXXXXXLLFAVG--DEERYRGCEPLILSCPSCSST--FDCPAVCSS 1342
DPS+F+ L V DEE+Y+ CE +CP C + +D S
Sbjct: 1213 DPSQFKVYHHYHKDEENDDLLGGPVQLTDEEKYKDCERFKFACPKCGTENIYDNVVNGSD 1272
Query: 1343 ICMSVSEKP-SKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
+ + S SK E + W+ L I N++ ++ YY
Sbjct: 1273 MMIEASLLYCSKKECNESPWKYLM----------------QINNRLILDIRSYIKKYYTS 1316
Query: 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLV-RKYTEADLYKQLTYFCHL 1460
+ C++ TC+Y T L LR ++ G +CP C +V R+Y++ L+ QL ++ ++
Sbjct: 1317 WLRCEEPTCQYRTRRLPLRF---SKNGPLCPV---CKKAVVKREYSDKVLFTQLCFYRYI 1370
Query: 1461 LDTQRGIEKMEISAKIPLEKEL---NKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
D +K+ K L+ + NK + +TV + +Y V L+ +
Sbjct: 1371 FDVDYAKQKLTNQEKDRLKSQGFFDNKTMEMYKKLKNTVDQWLAMSSYSEVNLSKL 1426
Score = 118 (46.6 bits), Expect = 3.8e-183, Sum P(3) = 3.8e-183
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 53 IYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQR 112
+YD + E++Y +V R+E+ +IVDDDG+GY ++G+E +D+ LD +
Sbjct: 4 VYDEIDEEQYSKIVRERQED--DWIVDDDGVGYVEDGREI------FDEDLEDDVLDSNK 55
Query: 113 SIKKQRIEKRGKKENNQN-VRKPNPSLTAAAAMMGKQ 148
K+ + KK + V KPN + A GK+
Sbjct: 56 KRKRDSASTKEKKNVKKTLVSKPNTIKSMFMANTGKK 92
Score = 44 (20.5 bits), Expect = 5.6e-139, Sum P(3) = 5.6e-139
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 497 LVKRKVKGPSWLSISKFSSCPAPQRVSWCKYE-ITVDSPKDIRVSSS-SKHVAEVPPVTV 554
L K+++ G S S +R S + +T D + V+SS SKH V P T
Sbjct: 128 LKKKRIFGTPLNPFSLQSQAATSKRFSSVVQKTVTSDKKETFTVNSSHSKHA--VFPATS 185
Query: 555 TAINLKTV 562
A+ K++
Sbjct: 186 EAVKEKSL 193
Score = 40 (19.1 bits), Expect = 6.4e-175, Sum P(3) = 6.4e-175
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
QE ++ VDDDG Y+ D E
Sbjct: 21 QEDDWIVDDDGV--GYVEDGRE 40
Score = 38 (18.4 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 16/102 (15%), Positives = 40/102 (39%)
Query: 785 LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA-RAQRVEYLLLHAFRAKKYIVPDKFTY 843
L + +F + P + Q + + +Q + + E +++ +K + P
Sbjct: 128 LKKKRIFGTPLNPFSLQSQAATSKRFSSVVQKTVTSDKKETFTVNSSHSKHAVFPATSEA 187
Query: 844 VKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG 885
VKE + + E+ + ++ ED +++ + D G
Sbjct: 188 VKEKSLTPENEADPAENGVLLKMKQEDITKEDEQAMMDFDDG 229
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 1205 (429.2 bits), Expect = 2.3e-181, Sum P(3) = 2.3e-181
Identities = 294/746 (39%), Positives = 420/746 (56%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P SHF VV K IFP F + ++N K ++ER LL + +++K+D
Sbjct: 582 QPPFQSHFCVVSKPKDCIFPYDFKESIKEKNVKVE-----VAATERTLLGFFLAKVHKID 636
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D++VGHNI GF+L+VLL R VC+VP WSKIGRLKRS MPKL GR+ FG +
Sbjct: 637 PDIIVGHNIYGFELEVLLQRINVCKVP--FWSKIGRLKRSNMPKLG-GRSGFGEKNA--- 690
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L + L +R + + M+ L+ L
Sbjct: 691 -TC--GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPIETIRNMYSDSSHLLYL 747
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 748 LEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 807
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR--KGKRGPAYAG 893
IVPDK T+ K + G ED +++ TN+ +++ K G Y
Sbjct: 808 IVPDKQTF------RKPQQKLGDEDEDIDGDTNKYKKGRKKAAYSGGLVLDPKVG-FYDK 860
Query: 894 GLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTGVLP 952
++L LY ++ +FN + ++ + + VE +P LP S G+LP
Sbjct: 861 FILLLDFNSLYPS--IIQEFNICFTTVQRVASEAQKVVEDGEQEQIPELPDPSLEMGILP 918
Query: 953 ELLKNLVQRRR--MVKTWMKTASGLKI--QQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
++ LV+RRR + K M L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAK
Sbjct: 919 REIRKLVERRRETIQKHLMPQICLLSLCGLQYDIRQKALKLTANSMYGCLGFSYSRFYAK 978
Query: 1009 PLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEV 1068
PLA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EV
Sbjct: 979 PLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEV 1037
Query: 1069 NKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSK 1127
NK YK LEID+DG + DG E KGLD+VRRDW L+K
Sbjct: 1038 NKLYKLLEIDIDGIFKSLLLLKKKKYAALIVEPTSDGNYVTKQEVKGLDIVRRDWCDLAK 1097
Query: 1128 EVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDA 1187
+ G+F + QILS+++ + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD
Sbjct: 1098 DTGNFVIGQILSDQNRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDK 1157
Query: 1188 KNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDG 1247
K+ PHV VAL + G AGDTV Y+IC GS++ QRA P++L+K D
Sbjct: 1158 KSLPHVHVALWINSQG-GRKVKAGDTVSYVIC-----QDGSNLTAGQRAYAPEQLQKQDN 1211
Query: 1248 KWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXL 1307
ID YY +QQIHPVV+R+C I+G +A LGLDP++F+
Sbjct: 1212 L-SIDTQYYLAQQIHPVVARICEPIDGIDAILIASWLGLDPTQFRVHHYHKDEENDALLG 1270
Query: 1308 LFA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+Y+ CE CP+C +
Sbjct: 1271 GPAHLTDEEKYKDCERFKCPCPTCGT 1296
Score = 486 (176.1 bits), Expect = 2.3e-181, Sum P(3) = 2.3e-181
Identities = 123/355 (34%), Positives = 191/355 (53%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D++ FY LDA+E + G ++LFGKV ++ TH SCCV+VKN++R + +P
Sbjct: 342 DEEQVFQFYWLDAYED-PYSQPGVVFLFGKVWIESAETHVSCCVMVKNIERSLCFLPRE- 399
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + +P+ ++DV +IA + + + +V ++ Y
Sbjct: 400 -------MKVDLNTGKESGTPVT----MKDVYDEFDEKIAAKYKIMKFKSKVV---EKNY 445
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 446 AFEIPDVPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 504
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P +SWCK E V P + V K V PPV V ++++KT+ N +
Sbjct: 505 LEVKNPQLLNQP--ISWCKVEAMVLKPDLVNVI---KDVGP-PPVVVMSLSMKTMQNAKT 558
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEI++ S + H +D +P SHF VV K IFP F + ++N
Sbjct: 559 HENEIIAVSALVHHSFALDKAP-----PQPPFQSHFCVVSKPKDCIFPYDFKESIKEKNV 613
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K ++ER LL + +++K+D D++VGHNI GF+L+VLL R VC+VP
Sbjct: 614 KVE-----VAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVP 663
Score = 107 (42.7 bits), Expect = 2.3e-181, Sum P(3) = 2.3e-181
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDFTSVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLDGQRSIKKQRIEKRGKKE-NNQNVRKPNPSLTAAAAMMGKQ 148
D++LD K + + K+ V KPN + A G++
Sbjct: 107 DDALDSHEKGKDNKACNKDKRTVKRAAVTKPNNIKSMFIASAGRK 151
Score = 37 (18.1 bits), Expect = 5.7e-174, Sum P(3) = 5.7e-174
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 1195 (425.7 bits), Expect = 4.9e-181, Sum P(4) = 4.9e-181
Identities = 301/776 (38%), Positives = 430/776 (55%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P +HF VV K IFP + KEA + A V +ER LL L+ +++K+D
Sbjct: 523 QPPFQTHFCVVCKPSDCIFPYDY-KEAI-KQKNANIEVAL---TERTLLGFLLAKIHKID 577
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
DV+VGH+I GFDL+VLL R VC+VP WSKIGRL+RS MPKL GR SG +
Sbjct: 578 PDVIVGHDIYGFDLEVLLQRINVCKVPH--WSKIGRLRRSIMPKLG-GR----SGFAERN 630
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L L +R + ++ + L+ +
Sbjct: 631 AAC--GRMICDVQISAKELIRCKSYHLSELVHQILKTERLIIPGENIRNYYSDSPQLLYM 688
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ D +++M L+VLPL Q+TNI+GN+ +TL G R++R EYLLLHAF +
Sbjct: 689 LEHTWLDTKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFYENNF 748
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
IVPDK T+ K + D+ ++ + A + D + G Y +
Sbjct: 749 IVPDKPTFKKPLQNLVDEDEDIENDQGKQKKVRKKAAYAGGLVL-DPKVG----FYDKFI 803
Query: 896 VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----VPHLPSSKTT-GV 950
+L LY ++ +FN + ++ Q + + ++ P+G +P LP G+
Sbjct: 804 LLLDFNSLYPS--IIQEFNICFTTV-QRLD---SNAQKMPEGEEQDDIPQLPDPDLELGI 857
Query: 951 LPELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
LP ++ LV+RRR VK MK S L Q DI+Q+ALKLTANSMYGCLGFS SRFYA
Sbjct: 858 LPREIRKLVERRRQVKQLMKQ-SDLNPDLYMQYDIRQKALKLTANSMYGCLGFSFSRFYA 916
Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQE 1067
KPLA L+T +GREIL T D+VQ +NLEVIYGDTDSIMI++ V E
Sbjct: 917 KPLAALVTHKGREILLHTRDMVQK-MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSE 975
Query: 1068 VNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLS 1126
VNK YK LEID+DG + DG E KGLD+VRRDW L+
Sbjct: 976 VNKLYKQLEIDIDGVFKSLLLLKKKKYAALTMEPAGDGKYVTKQELKGLDIVRRDWCDLA 1035
Query: 1127 KEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPD 1186
KE G++ ++QILS++ + +VE+I L+++ E++ +G + + +Y I K LTK P+ YPD
Sbjct: 1036 KETGNYIITQILSDQPRDTIVENIQKQLIEIGENVVNGSIPINQYEINKALTKDPQDYPD 1095
Query: 1187 AKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGD 1246
K+ PHV VAL + G AGDTV YIIC GS++ +QRA ++L+K D
Sbjct: 1096 KKSLPHVHVALWINSQG-GRKMKAGDTVSYIIC-----QDGSNLSASQRAYALEQLQKQD 1149
Query: 1247 GKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXX 1306
ID YY SQQ+HPVV+R+C I+G +A LGLDPS+F+
Sbjct: 1150 NL-AIDTQYYLSQQVHPVVARICEPIDGIDSALIAAWLGLDPSQFRVQSHYQKDEENDAM 1208
Query: 1307 L--LFAVGDEERYRGCEPLILSCPSCSST--FDCPAVCSSICMS-VSEKPSKPETE 1357
L + DEE+Y+ CE +CP+C + +D S M + ++ KPE +
Sbjct: 1209 LGGPSQITDEEKYKDCERFKFTCPACGTEGIYDNAFDGSGALMEPILKRCCKPECD 1264
Score = 506 (183.2 bits), Expect = 4.9e-181, Sum P(4) = 4.9e-181
Identities = 134/355 (37%), Positives = 186/355 (52%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D D FY LDA+E G +YLFGKV ++ H SCC+ VKN++R VY +P
Sbjct: 283 DGDQVFRFYWLDAYEDQYN-QPGVVYLFGKVWIESAEAHVSCCLTVKNIERTVYLLPRET 341
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
Q D L E +P++ Q+ IA + + + +++ Y
Sbjct: 342 --QVD----LSSGKETG--TPVSMMNVYQE----FNERIAEKF---KLMKFKSKKIEKNY 386
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++PA Y L++ Y + PPLP DLKGE F + GT++S+LELFL+ RK+KGPSW
Sbjct: 387 AFEIPDVPANSEY-LEVRYSAELPPLPKDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 445
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L I P VSWCK E P + V PP+ V A+++KTV N +
Sbjct: 446 LEIKTPQLSFQP--VSWCKVEAVALKPDLVSVVKD----LPPPPLVVMALSMKTVQNAKT 499
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEIV+ SV+ HK +D +P +HF VV K IFP + KEA +
Sbjct: 500 HQNEIVAISVLAHHKFPLDKAP-----PQPPFQTHFCVVCKPSDCIFPYDY-KEAI-KQK 552
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
A V +ER LL L+ +++K+D DV+VGH+I GFDL+VLL R VC+VP
Sbjct: 553 NANIEVAL---TERTLLGFLLAKIHKIDPDVIVGHDIYGFDLEVLLQRINVCKVP 604
Score = 241 (89.9 bits), Expect = 2.0e-64, Sum P(4) = 2.0e-64
Identities = 79/292 (27%), Positives = 126/292 (43%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA ++L+K D ID YY SQQ+HPVV+R+C I+G +A LGL
Sbjct: 1130 GSNLSASQRAYALEQLQKQDNL-AIDTQYYLSQQVHPVVARICEPIDGIDSALIAAWLGL 1188
Query: 1287 DPSKFQXXXXXXXXXXXXXXL--LFAVGDEERYRGCEPLILSCPSCSST--FDCPAVCSS 1342
DPS+F+ L + DEE+Y+ CE +CP+C + +D S
Sbjct: 1189 DPSQFRVQSHYQKDEENDAMLGGPSQITDEEKYKDCERFKFTCPACGTEGIYDNAFDGSG 1248
Query: 1343 ICMS-VSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
M + ++ KPE C P + N++ + YY
Sbjct: 1249 ALMEPILKRCCKPE----------CDASPMHFVI------QLQNKLHLDIRRHIKKYYSA 1292
Query: 1402 LMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHL 1460
+C++ TC+ T L L + G +C C +R +Y + LY QL ++ ++
Sbjct: 1293 WFICEEPTCQNRTRRLPLNF---SRNGPICQ---ACMKATLRPEYPDKALYTQLCFYRYI 1346
Query: 1461 LDTQRGIEKM--EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKL 1510
D + EK ++ ++ + EL+ V TV R Y V L
Sbjct: 1347 FDLEYTKEKSVSDVEKRLLKDAELDGTDVVYKRLKGTVDRCLSSSGYSEVNL 1398
Score = 69 (29.3 bits), Expect = 4.9e-181, Sum P(4) = 4.9e-181
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 77 IVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNP 136
IVDDDG+GY ++G+E + D S KK +++G + V KPN
Sbjct: 1 IVDDDGVGYVEDGRE----IFDDDLQDDVASNSSAAKGKKGNAQEKGNLKKPV-VSKPNS 55
Query: 137 SLTAAAAMMGKQ 148
T A GK+
Sbjct: 56 IKTMFMASAGKK 67
Score = 45 (20.9 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 496 FLVKRKVKGPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
++ K+++KG L I + C A + ++ +I D P+D V + K + E+
Sbjct: 1015 YVTKQELKG---LDIVRRDWCDLAKETGNYIITQILSDQPRDTIVENIQKQLIEI 1066
Score = 45 (20.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 858 VEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEP 899
VED E+ ++D D+ S++ KGK+G A G + +P
Sbjct: 10 VEDGR--EIFDDDLQ-DDVASNSSAAKGKKGNAQEKGNLKKP 48
Score = 37 (18.1 bits), Expect = 4.9e-181, Sum P(4) = 4.9e-181
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 324 ESEFEVDDDGSLPFYILDAHEQLSGANMGTLY 355
E + DD G + F L+ E + ++ L+
Sbjct: 182 EEDTAEDDQGMMDFDYLNFDEPMEAEDLNLLH 213
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 1209 (430.6 bits), Expect = 7.9e-181, Sum P(3) = 7.9e-181
Identities = 298/748 (39%), Positives = 417/748 (55%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P SHF VV K IFP F ++N K ++ER LL + +++K+D
Sbjct: 582 QPPFQSHFCVVSKPKDCIFPYTFKDYIKEKNVKVE-----IAATERTLLGFFLAKVHKID 636
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D++VGHNI GF+L+VLL R VC+VP WSKIGRLKRS MPKL GR+ FG +
Sbjct: 637 PDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKRSNMPKLG-GRSGFGERNA--- 690
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L + L +R + +V M+ L+ L
Sbjct: 691 -TC--GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYL 747
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 748 LEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 807
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG-----KRGPA 890
IVPDK + K + G ED EEL + + + G K G
Sbjct: 808 IVPDKQIF------RKPQQKLGDED---EELDGDANKYKKGRKKAAYAGGLVLDPKAG-F 857
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTG 949
Y ++L LY ++ +FN + ++ + + E +P LP G
Sbjct: 858 YDKFILLLDFNSLYPS--IIQEFNICFTTVQRVASETQKVTEDGEQEQIPELPDPGLEMG 915
Query: 950 VLPELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
+LP ++ LV+RR+ VK MK L + Q DI+Q+ALKLTANSMYGCLGFS SRFY
Sbjct: 916 ILPREIRKLVERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFY 974
Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQ 1066
AKPLA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V
Sbjct: 975 AKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTDLEEVYKLGNKVKS 1033
Query: 1067 EVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLL 1125
EVNK YK LEID+DG + DG E KGLD+VRRDW L
Sbjct: 1034 EVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGLDIVRRDWCDL 1093
Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
+KE G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YP
Sbjct: 1094 AKETGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYP 1153
Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
D K+ PHV VAL + G AGDTV Y+IC GS++ +QRA P++L+K
Sbjct: 1154 DKKSLPHVHVALWMNSQG-GRKMKAGDTVSYVIC-----QDGSNLTASQRAYAPEQLQKQ 1207
Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXX 1305
D ID YY +QQIHPVV+R+C I+G +A LGLDP++F+
Sbjct: 1208 DNL-TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGLDPTQFRVHHYHKDEENDAL 1266
Query: 1306 XLLFA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+YR CE CP+C +
Sbjct: 1267 LGGPAQLTDEEKYRDCERFKCPCPTCGT 1294
Score = 473 (171.6 bits), Expect = 7.9e-181, Sum P(3) = 7.9e-181
Identities = 119/355 (33%), Positives = 188/355 (52%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D++ FY LDA+E + G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 342 DEEQVFHFYWLDAYED-QYSQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLYFLPRE- 399
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + + + ++DV +IA + + + PV++ Y
Sbjct: 400 -------MKIDLNTGKETETLVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNY 445
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LE+FL+ RK+KGP W
Sbjct: 446 AFEIPDVPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIKGPCW 504
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P VSWCK E P + V K + PP+ V + ++KT+ N +
Sbjct: 505 LEVKNPQLLNQP--VSWCKVEAMALKPDLVNVI---KDIGP-PPLVVMSFSMKTMQNAKT 558
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
+EI++ + + H +D +P SHF VV K IFP F ++N
Sbjct: 559 HQHEIIAVAALVHHSFALDKAA-----PQPPFQSHFCVVSKPKDCIFPYTFKDYIKEKNV 613
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K ++ER LL + +++K+D D++VGHNI GF+L+VLL R VC+VP
Sbjct: 614 KVE-----IAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVP 663
Score = 263 (97.6 bits), Expect = 1.5e-68, Sum P(3) = 1.5e-68
Identities = 84/293 (28%), Positives = 141/293 (48%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA P++L+K D ID YY +QQIHPVV+R+C I+G +A LGL
Sbjct: 1189 GSNLTASQRAYAPEQLQKQDNL-TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLGL 1247
Query: 1287 DPSKFQXXXXXXXXXXXXXXLLFA-VGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICM 1345
DP++F+ A + DEE+YR CE CP+C + +I
Sbjct: 1248 DPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCERFKCPCPTCGT--------ENIYD 1299
Query: 1346 SVSEKPSKPETEYNFWR--TLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLM 1403
SV + S + E + +R + C P ++S +I + ++R + YY+G +
Sbjct: 1300 SVLDG-SGTDVEPSLYRCSNIDCKASPL-TSVVQLSNKLIMD-IRR----CIKKYYEGWL 1352
Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLLD 1462
+C++ TC+ T L L+ + G +C C +R +Y++ LY QL ++ ++ D
Sbjct: 1353 ICEEPTCQNRTRRLPLQF---SRNGPLCQV---CMKATLRPEYSDKSLYTQLCFYRYIFD 1406
Query: 1463 TQRGIEKMEISA-KIPLEKELN-KIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
+EK+ K L+K K+R +T ++ R Y V L+ +
Sbjct: 1407 VDCALEKLSTDQEKDKLKKVFTLKVRQDYQKLRNTAEQFLSRSGYSEVNLSKL 1459
Score = 111 (44.1 bits), Expect = 7.9e-181, Sum P(3) = 7.9e-181
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDFTSVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLDGQRSIKKQRIEKRGKKE-NNQNVRKPNPSLTAAAAMMGKQ 148
D++LD K + + ++ V KPN + A GK+
Sbjct: 107 DDALDSHEKGKDDKARTKDRRNVKKAAVTKPNNIKSMFIASAGKK 151
Score = 38 (18.4 bits), Expect = 4.9e-45, Sum P(3) = 4.9e-45
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 727 TFLCSRDLLREVSYSLTQLAKTQLNKDR-KEVGPHDVLKMFQTLESLME--LIEYGETDA 783
T LC + +V +L +L+ Q KD+ K+V V + +Q L + E L G ++
Sbjct: 1396 TQLCFYRYIFDVDCALEKLSTDQ-EKDKLKKVFTLKVRQDYQKLRNTAEQFLSRSGYSEV 1454
Query: 784 WLSMELMFHLSVLP 797
LS +L +V P
Sbjct: 1455 NLS-KLFADCAVRP 1467
Score = 37 (18.1 bits), Expect = 5.0e-173, Sum P(3) = 5.0e-173
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 1189 (423.6 bits), Expect = 7.0e-180, Sum P(3) = 7.0e-180
Identities = 289/744 (38%), Positives = 419/744 (56%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P +HF V+ KL+ IFP +N+ +N+ N+ +ER LL + +++K+D
Sbjct: 576 QPPFQTHFCVLSKLNDCIFPYDYNEAVKQKNA----NIEIA-LTERTLLGFFLAKIHKID 630
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
DV+VGH+I GFDL+VLL R C+VP WSKIGRL+RS MPKL GR SG +
Sbjct: 631 PDVIVGHDIYGFDLEVLLQRINSCKVP--FWSKIGRLRRSVMPKLG-GR----SGFAERN 683
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L L +R + P ++ + L+ +
Sbjct: 684 AAC--GRIICDIEISAKELIRCKSYHLSELVHQILKAERVVIPPENIRNAYNDSVHLLYM 741
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E DA +++M L+VLPL Q+TNI+GN+ +TL G R++R EYLLLHAF +
Sbjct: 742 LENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFTENNF 801
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGL 895
IVPDK + K + + ++ D+N + + + A + + K G Y +
Sbjct: 802 IVPDKPVFKKMQQTTVEDNDDMGTDQNKNK-SRKKAAYAGGLV----LEPKVG-FYDKFI 855
Query: 896 VLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTT-GVLPEL 954
+L LY ++ ++N + ++ +E +T + +P LP S G+LP
Sbjct: 856 LLLDFNSLYPS--IIQEYNICFTTVHREAP---STQKGEDQDEIPELPHSDLEMGILPRE 910
Query: 955 LKNLVQRRRMVKTWMKTAS---GLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
++ LV+RRR VK MK L +Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA
Sbjct: 911 IRKLVERRRHVKQLMKQPDLNPDLYLQY-DIRQKALKLTANSMYGCLGFSYSRFYAKPLA 969
Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKK 1071
L+T QGREIL T ++VQ +NLEVIYGDTDSIMI++ V E+NK
Sbjct: 970 ALVTHQGREILLHTKEMVQK-MNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKS 1028
Query: 1072 YKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVG 1130
YK LEID+DG + DG E KGLD+VRRDW L+K+ G
Sbjct: 1029 YKLLEIDIDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAG 1088
Query: 1131 DFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQ 1190
++ +SQILS++ + +VE+I L ++ E++ +G V + +Y I K LTK P+ YPD K+
Sbjct: 1089 NYVISQILSDQPRDSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQDYPDKKSL 1148
Query: 1191 PHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWM 1250
PHV VAL + G AGDT+ Y+IC GS++ +QRA ++L+K +
Sbjct: 1149 PHVHVALWINSQG-GRKVKAGDTISYVIC-----QDGSNLSASQRAYAQEQLQKQENL-S 1201
Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXL--L 1308
ID YY SQQ+HPVV+R+C I+G +A LGLDPS+F+ L
Sbjct: 1202 IDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGLDPSQFRAHRHYQQDEENDALLGGP 1261
Query: 1309 FAVGDEERYRGCEPLILSCPSCSS 1332
+ DEE+YR CE CP C +
Sbjct: 1262 SQLTDEEKYRDCERFKFFCPKCGT 1285
Score = 495 (179.3 bits), Expect = 7.0e-180, Sum P(3) = 7.0e-180
Identities = 129/355 (36%), Positives = 190/355 (53%)
Query: 332 DGS--LPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
DGS FY LDA+E + G +YLFGKV ++ + SCCV VKN++R VY +P
Sbjct: 336 DGSQVFRFYWLDAYED-QYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVYLLPREN 394
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
Q + KD +P++ Q+ +A + + + V + Y
Sbjct: 395 RVQ----LSTGKDTG----APVSMMHVYQE----FNEAVAEKY---KIMKFKSKKVDKDY 439
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++PA Y L++ Y P LP DLKGE F + GT++S+LELFL+ RK+KGPSW
Sbjct: 440 AFEIPDVPASSEY-LEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSW 498
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L I S + Q +SWCK E V P + V K +A PPV V ++++KTV N +
Sbjct: 499 LEIK--SPQLSSQPMSWCKVEAVVTRPDQVSVV---KDLAP-PPVVVLSLSMKTVQNAKT 552
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
NEIV+ + + H +D +P +HF V+ KL+ IFP +N+ +N+
Sbjct: 553 HQNEIVAIAALVHHTFPLDKAP-----PQPPFQTHFCVLSKLNDCIFPYDYNEAVKQKNA 607
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
N+ +ER LL + +++K+D DV+VGH+I GFDL+VLL R C+VP
Sbjct: 608 ----NIEIA-LTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVP 657
Score = 252 (93.8 bits), Expect = 1.1e-68, Sum P(3) = 1.1e-68
Identities = 82/293 (27%), Positives = 135/293 (46%)
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
GS++ +QRA ++L+K + ID YY SQQ+HPVV+R+C I+G +A LGL
Sbjct: 1179 GSNLSASQRAYAQEQLQKQENL-SIDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGL 1237
Query: 1287 DPSKFQXXXXXXXXXXXXXXL--LFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSIC 1344
DPS+F+ L + DEE+YR CE CP C + V
Sbjct: 1238 DPSQFRAHRHYQQDEENDALLGGPSQLTDEEKYRDCERFKFFCPKCGTENIYDNVFDGSG 1297
Query: 1345 MSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGM-IANQVKRQADGFVSMYYKGLM 1403
+ + +P + RC K PE +A + + + N++ ++ YY G +
Sbjct: 1298 LQI-----EPGLK-------RCSK-PE-CDASPLDYVIQVHNKLLLDIRRYIKKYYSGWL 1343
Query: 1404 MCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVR-KYTEADLYKQLTYFCHLLD 1462
+C+++TC+ T L L + G +C C+ +R +Y E LY QL ++ + D
Sbjct: 1344 VCEEKTCQNRTRRLPLSF---SRNGPICQ---ACSKATLRSEYPEKALYTQLCFYRFIFD 1397
Query: 1463 TQRGIEKM-EISAKIPLEKEL-NKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
+EK+ + L+K+L + STV ++ R Y V L+ +
Sbjct: 1398 WDYALEKVVSEQERGHLKKKLFQESENQYKKLKSTVDQVLSRSGYSEVNLSKL 1450
Score = 100 (40.3 bits), Expect = 7.0e-180, Sum P(3) = 7.0e-180
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ + IY+ V E EY LV R+++ +IVDDDG GY ++G+E +
Sbjct: 40 YEVEQVSSIYEEVDEAEYSKLVRDRQDD--DWIVDDDGTGYVEDGREI------FDDDLE 91
Query: 105 DESL-DGQRSIKKQRIEKRGKKENNQNVRKPN--PSLTAAAAM 144
D +L D + K +K K+++ V KPN S+ A+A+
Sbjct: 92 DNALADSGKGAKGAPKDKTNVKKSS--VSKPNNIKSMFMASAV 132
Score = 58 (25.5 bits), Expect = 1.9e-175, Sum P(3) = 1.9e-175
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 67 ARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
A+ +EE G + DDG + DE EED + + SS+ + +K++ I++
Sbjct: 241 AQVKEEDSGMVEFDDG-DF-DEPMEEDVEITPVDSSTIKTQAQSIKCVKEENIKE 293
Score = 47 (21.6 bits), Expect = 4.3e-21, Sum P(3) = 4.3e-21
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 496 FLVKRKVKGPSWLSISKFSSCP-APQRVSWCKYEITVDSPKDIRVSSSSKHVAEV 549
++ K+++KG L I + C A Q ++ +I D P+D V + K + E+
Sbjct: 1064 YVTKQELKG---LDIVRRDWCELAKQAGNYVISQILSDQPRDSIVENIQKKLTEI 1115
Score = 46 (21.3 bits), Expect = 3.8e-177, Sum P(4) = 3.8e-177
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 103 SDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
SD S RS ++++ EK G+KE + +++
Sbjct: 2 SDSGSFAASRS-RREKTEKSGRKEALERLKR 31
Score = 40 (19.1 bits), Expect = 3.8e-177, Sum P(4) = 3.8e-177
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG+ Y+ D E
Sbjct: 65 QDDDWIVDDDGT--GYVEDGRE 84
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 1197 (426.4 bits), Expect = 1.5e-179, Sum P(3) = 1.5e-179
Identities = 297/751 (39%), Positives = 416/751 (55%)
Query: 596 KPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLD 655
+P SHF VV K IFP F ++N K ++ER LL + +++K+D
Sbjct: 582 QPPFQSHFCVVSKPKDCIFPYTFKDYIKEKNVKVE-----IAATERTLLGFFLAKVHKID 636
Query: 656 SDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGI 715
D++VGHNI GF+L+VLL R VC+VP WSKIGRLKRS MPKL GR+ FG +
Sbjct: 637 PDIIVGHNIYGFELEVLLQRINVCKVPH--WSKIGRLKRSNMPKLG-GRSGFGERNA--- 690
Query: 716 MSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMEL 775
+C GR++CD + +++L+R SY L++L + L +R + +V M+ L+ L
Sbjct: 691 -TC--GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYL 747
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKY 835
+E+ DA +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF Y
Sbjct: 748 LEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNY 807
Query: 836 IVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG-----KRGPA 890
IVPDK + K + G ED EEL + + + G K
Sbjct: 808 IVPDKQIF------RKPQQKLGDED---EELDGDANKYKKGRKKAAYAGGLVLDPKAAGF 858
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTG 949
Y ++L LY ++ +FN + ++ + + E +P LP G
Sbjct: 859 YDKFILLLDFNSLYPS--IIQEFNICFTTVQRVASETQKVTEDGEQEQIPELPDPGLEMG 916
Query: 950 VLPELLKNLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFY 1006
+LP ++ LV+RR+ VK MK L + Q DI+Q+ALKLTANSMYGCLGFS SRFY
Sbjct: 917 ILPREIRKLVERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFY 975
Query: 1007 AKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQ 1066
AKPLA L+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V
Sbjct: 976 AKPLAALVTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSTDLEEVYKLGNKVKS 1034
Query: 1067 EVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLL 1125
EVNK YK LEID+DG + DG E KGLD+VRRDW L
Sbjct: 1035 EVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGLDIVRRDWCDL 1094
Query: 1126 SKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYP 1185
+KE G+F + QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YP
Sbjct: 1095 AKETGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYP 1154
Query: 1186 DAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKG 1245
D K+ PHV VAL + G AGDTV Y+IC GS++ +QRA P++L+K
Sbjct: 1155 DKKSLPHVHVALWMNSQG-GRKMKAGDTVSYVIC-----QDGSNLTASQRAYAPEQLQKQ 1208
Query: 1246 DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCL---GLDPSKFQXXXXXXXXXX 1302
D ID YY +QQIHPVV+R+C I+G +A L GLDP++F+
Sbjct: 1209 DNL-TIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWLALTGLDPTQFRVHHYHKDEEN 1267
Query: 1303 XXXXLLFA-VGDEERYRGCEPLILSCPSCSS 1332
A + DEE+YR CE CP+C +
Sbjct: 1268 DALLGGPAQLTDEEKYRDCERFKCPCPTCGT 1298
Score = 473 (171.6 bits), Expect = 1.5e-179, Sum P(3) = 1.5e-179
Identities = 119/355 (33%), Positives = 188/355 (52%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D++ FY LDA+E + G ++LFGKV ++ TH SCCV+VKN++R +Y +P
Sbjct: 342 DEEQVFHFYWLDAYED-QYSQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLYFLPRE- 399
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
MK++ + + + + ++DV +IA + + + PV++ Y
Sbjct: 400 -------MKIDLNTGKETETLVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNY 445
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LE+FL+ RK+KGP W
Sbjct: 446 AFEIPDVPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIKGPCW 504
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P VSWCK E P + V K + PP+ V + ++KT+ N +
Sbjct: 505 LEVKNPQLLNQP--VSWCKVEAMALKPDLVNVI---KDIGP-PPLVVMSFSMKTMQNAKT 558
Query: 568 DVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNS 627
+EI++ + + H +D +P SHF VV K IFP F ++N
Sbjct: 559 HQHEIIAVAALVHHSFALDKAA-----PQPPFQSHFCVVSKPKDCIFPYTFKDYIKEKNV 613
Query: 628 KAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
K ++ER LL + +++K+D D++VGHNI GF+L+VLL R VC+VP
Sbjct: 614 KVE-----IAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVP 663
Score = 111 (44.1 bits), Expect = 1.5e-179, Sum P(3) = 1.5e-179
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V E++Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDFTSVYEEVDEEQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLDGQRSIKKQRIEKRGKKE-NNQNVRKPNPSLTAAAAMMGKQ 148
D++LD K + + ++ V KPN + A GK+
Sbjct: 107 DDALDSHEKGKDDKARTKDRRNVKKAAVTKPNNIKSMFIASAGKK 151
Score = 37 (18.1 bits), Expect = 9.3e-172, Sum P(3) = 9.3e-172
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 972 (347.2 bits), Expect = 1.9e-165, Sum P(4) = 1.9e-165
Identities = 238/653 (36%), Positives = 351/653 (53%)
Query: 885 GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP----DGLVP 940
GK+ Y GGLV EP+KGLYDK++L++DFNSLYPSIIQEYNICFTTV+R+ D VP
Sbjct: 844 GKKKDKYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTSLSEDDDAVP 903
Query: 941 HLPSSKTTGVLPELLKNLVQRRRMVKTWMK--TASGLKIQQLDIQQQALKLTANSMYGCL 998
+P + G+LP+L+ LV RRR VK+ MK A+ ++ DI+Q ALKLTANSMYGCL
Sbjct: 904 EVPKEQAQGILPKLIATLVSRRRQVKSLMKDKNATPEELATWDIKQLALKLTANSMYGCL 963
Query: 999 GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXX 1058
G++ SRFYA+PLA L T +GREILRST +L ++N +L+VIYGDTDS+MI++
Sbjct: 964 GYTKSRFYARPLAVLTTYKGREILRSTKELAESN-SLQVIYGDTDSVMINANKDNVAEAL 1022
Query: 1059 XXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMV 1118
+ VN++Y+ LEID+D +G E +E KGLDM
Sbjct: 1023 RVGHEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINMVEVNGKWVEKMEVKGLDMK 1082
Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
RR++ LSKE+ + L++ILS E V+ IH L + MR G V ++KY+I+ L
Sbjct: 1083 RREYCGLSKEISNRILTEILSGDDTEVSVQRIHEYLRDISAKMREGAVPVQKYIISTQLG 1142
Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
K P+ YP+A + P VQVALR G + GD + YII G S +S +A+RA
Sbjct: 1143 KAPKDYPNADSMPQVQVALRELAKGKTI--RKGDVISYIIT---GDSKTTSEAVAKRAYT 1197
Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXX 1298
P ++ K + D+++Y +QI P V RLCA+I GTS +LA+ LGLD ++
Sbjct: 1198 PQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLAENLGLDVRRYSSNTNNN 1257
Query: 1299 XXXXXXXX---LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPE 1355
L + D R++ C L L C C ++ + S ++ + PS
Sbjct: 1258 SSGPQDLEIHPLESQIPDSLRFQSCARLSLRCRKCKTSHPFEGLASPSSVN-NVTPSG-- 1314
Query: 1356 TEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTC 1415
++CP C + +S + QV+ + YY+G ++CDD +C T
Sbjct: 1315 --------IQCPSC--QYVLPMLS---VVAQVEAAVRAQTARYYEGWLVCDDSSCGNRTR 1361
Query: 1416 SLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG--------- 1466
+++ G G+ C GR+ +YTE D+Y QL YF L D +
Sbjct: 1362 QISV--YGTRCLGSKGLARGECGGRMRYEYTERDIYNQLVYFASLWDVDKAKSKAKENND 1419
Query: 1467 --IEKMEISA----KIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
++ ++SA ++ + E N++R V++ ++C WV ++ +
Sbjct: 1420 EDVDAAKLSAEEKERVAIMAEHNRVR--FGTVKGVVEKYLDKCGRRWVAMDTL 1470
Score = 579 (208.9 bits), Expect = 1.9e-165, Sum P(4) = 1.9e-165
Identities = 145/451 (32%), Positives = 239/451 (52%)
Query: 425 EIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCS 484
E+ + +NV + + R+YAF ++P Y LK+ YP+ P + KGE F
Sbjct: 419 EVDEIMTKMNVGMHKIKACTRKYAFELPDVPKESQY-LKLLYPYTKPAMEPTHKGETFSH 477
Query: 485 LLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSK 544
+ GT+++ E F++ + + GP WL I + + + S CK E+ V+ P + V +++
Sbjct: 478 VFGTNTALFEQFVLWKNIMGPCWLKIED-ADFTSLRNASHCKLEVLVEHPNMVSVPDNAE 536
Query: 545 HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSH-- 602
+ E PP+T+ ++ ++T FN + + EI++ S + +D + S+ P L+
Sbjct: 537 SI-EPPPLTLLSLAMRTAFNPKDNKQEILAVS----GRVYLDVSL--SDTTPPDKLASRS 589
Query: 603 FTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGH 662
FT VR G FP+GF A +RN VL E +LN L+ ++ +D DV++GH
Sbjct: 590 FTAVRPY-GSAFPIGFETLAKERNR----GVLKLFKQEHEILNFLLAQIDVVDPDVILGH 644
Query: 663 NISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK--LRKGRTIFGSGASPGIMSCIA 720
+ G D +LL+R + + WS++GRL+RS+ P ++ G +F A IMS
Sbjct: 645 QLEGVDYSILLNRLHEKK--THQWSRLGRLRRSQWPSSIVKMGGNVF---AERQIMS--- 696
Query: 721 GRLLCDTFL-CSRDLLREV-SYSLTQLAKTQLNKD--RKEVGPHDVLKMFQTLES--LME 774
GRLLCD + ++ + ++SLT++ L + R+++ LK + + LM+
Sbjct: 697 GRLLCDLANDAGKSVMTKCQTWSLTEMCSLYLGGESRRRDIDNEVALKTWANADKHGLMD 756
Query: 775 LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKK 834
I + ETD + L +LPLT+ LTN++GN W +TL G RA+R EY+LLH F K
Sbjct: 757 YISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNK 816
Query: 835 YIVPDKFTYVKETKMAKQRSNHGVEDRNVEE 865
Y+VPDK T+ +QR +E+ N EE
Sbjct: 817 YVVPDKQTF-----KGRQR----IEEENAEE 838
Score = 117 (46.2 bits), Expect = 1.9e-165, Sum P(4) = 1.9e-165
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWS-VAGLPSSS 103
Y++ + +Y+ V E++Y +V R E F+VDD+G GY D+G+EE W + S S
Sbjct: 26 YDVGEIDELYEEVDENQYKKIVRDRLNED-DFVVDDNGEGYADDGREE-WDRLPQYHSDS 83
Query: 104 DDE-SLDGQ--RSIKKQRIEKRGKKENN 128
++E L G R KKQ+ + K++ N
Sbjct: 84 EEELGLPGSKPRKSKKQKEHEDAKRDAN 111
Score = 87 (35.7 bits), Expect = 1.9e-165, Sum P(4) = 1.9e-165
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 301 AGWKEVSGG-NMVLDEGKSGLNCQESEFE--VDDDGSLPFYILDAHEQLSGANMGTLYLF 357
A W E++ N+V G + + +++ +++DGSL + D E N G+L LF
Sbjct: 313 ASWNEINQKLNVVSMSQSEGRSVGKIDYKDAIEEDGSLNMFWTDYTE----VN-GSLCLF 367
Query: 358 GKV--KAGSTHHSCCVVVKNMQRCVYAIP 384
GKV K T+ SC V V N+ R ++ +P
Sbjct: 368 GKVLNKKTKTYVSCFVKVDNILRKLFFLP 396
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 761 (272.9 bits), Expect = 1.1e-139, Sum P(6) = 1.1e-139
Identities = 185/454 (40%), Positives = 257/454 (56%)
Query: 890 AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER--SPDG----LVPHLP 943
AY+GGLVL+PK YD+Y++LLDFNSLYPSIIQEYN+CFTT+ R DG +P P
Sbjct: 888 AYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCFTTINRVKRDDGKWEEAMPP-P 946
Query: 944 SSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQ-QLDIQQQALKLTANSMYGCLGFSN 1002
SS G+LP++L LV +RR +K M+ I+ Q DIQQQA+KL ANSMYGCLGFS+
Sbjct: 947 SSIEKGILPKVLHGLVSKRREIKKRMEQEKNKIIKAQYDIQQQAVKLIANSMYGCLGFSH 1006
Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXX 1062
SRFYA PLAEL+T++GRE L+ +V N + +VIYGDTDS+MI++
Sbjct: 1007 SRFYALPLAELVTRKGRENLQKGASIV-NKMCYDVIYGDTDSLMIYTGVGTFNEAETIGK 1065
Query: 1063 XVIQEVNKKYK--CLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIER--KGLDMV 1118
+ +++N +Y+ +EI LDG +F+ ER KG+D+V
Sbjct: 1066 EIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLK-EFRIDSTTTKCERENKGIDIV 1124
Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
RRD+ L+K++G + L+ IL + I L VQ+ ++ +A+EK++ITKTL+
Sbjct: 1125 RRDYCDLTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFIITKTLS 1184
Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
K PE Y DA QPHVQVAL+++ G G+ VPYII +SS RAR
Sbjct: 1185 KQPEEYNDADIQPHVQVALQMRAKGLHV--QPGEQVPYIIT-HGNSSSDIKEEWHHRARA 1241
Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXX 1298
P +++ +DID+Y SQQI P + R I G P LA LG+ +K+Q
Sbjct: 1242 PSDVESIQD---VDIDWYLSQQILPSIQRNTGPI-GMEPHELAQWLGMTGTKYQKQFDHL 1297
Query: 1299 XXXXXXXXL-LFAVGDEE-RYRGCEPLILSCPSC 1330
+ + E+ RY+ C+ CP C
Sbjct: 1298 QQQSNQDFKPRYTLSTEDLRYKQCKSFNFECPYC 1331
Score = 397 (144.8 bits), Expect = 1.1e-139, Sum P(6) = 1.1e-139
Identities = 133/443 (30%), Positives = 207/443 (46%)
Query: 303 WKEVSGGNMVLDEGKSGLNCQESEF-EVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVK 361
W + ++VL + + + S+ +++ DGSL F++L E G + LFGKVK
Sbjct: 347 WSKTGVDSVVLVKKLEEIMPKNSDLLKMNMDGSLDFFLLTTEED----KQGRIILFGKVK 402
Query: 362 ------------AGST----------------HHSCCVVVKNMQRCVYAIPNGPLFQTDE 393
G+T + SCC++++ M+R V+ +P
Sbjct: 403 LQASKSNKPGGGGGATKQTSITDEPVTKVPLKYASCCIIIEKMERNVFFLPRD------- 455
Query: 394 IMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQA- 452
KL++D E + I ++ D + + E+ + + +Y + VKR AF +
Sbjct: 456 -YKLDQDGESTTI-------QVTDTMI--EAELKQLVDRSKIKDYKLKKVKRTSAFDYSV 505
Query: 453 ---EIPAGE-NYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWL 508
P GE +YV K++YP P D+KG F G SS +ELFL+KRK+ GP+WL
Sbjct: 506 PHKNGPVGEQHYVWKLSYPSNQMVFPNDIKGSTFRCAYGITSSPVELFLIKRKIMGPTWL 565
Query: 509 SISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQD 568
++S + Q+ S+ +YE TV S K I+ S + PP+TV +I+ K+V +
Sbjct: 566 TVSGIT-LNFDQKKSFARYEATVKSFKSIKPSMYKNEPS--PPLTVMSISTKSVM--KGS 620
Query: 569 VNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSK 628
+E+V S V D P + + + T +R L G +FP F K S
Sbjct: 621 SHEVVMISSVIHESISADGPT-----ENQDSIKYITAIRPLTGQVFPPDFQKPGA---ST 672
Query: 629 AGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSK 688
NV C +SER LL+ + D DV GHNI G+D++V+L R + +V W+
Sbjct: 673 TKQNVTIC-TSERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKVME--WAF 729
Query: 689 IGRLKRSEMPKLR--KGRTIFGS 709
IGRLKRS + GR I S
Sbjct: 730 IGRLKRSSFDRFNHISGRLICDS 752
Score = 305 (112.4 bits), Expect = 1.1e-139, Sum P(6) = 1.1e-139
Identities = 71/177 (40%), Positives = 102/177 (57%)
Query: 686 WSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREVSYSLTQ 744
W+ IGRLKRS + I+GRL+CD++L C L +E +YSL +
Sbjct: 727 WAFIGRLKRSSFDRFNH----------------ISGRLICDSYLVCKEFLPKEKNYSLVE 770
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
L+K QL+ ++ E+ + F+T + L IE E D ++ L+F L V PLT+QLTN
Sbjct: 771 LSKNQLSINKPEINYLSIEPYFETTKKLNIFIEINENDCYIIFLLIFKLLVFPLTKQLTN 830
Query: 805 ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKM-----AKQRSNH 856
++GN W K+L+ RA+R+EYLLLH F KKY++PDK Y K + AK + NH
Sbjct: 831 LAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKI-YQKSSSSGGGGGAKDKDNH 886
Score = 64 (27.6 bits), Expect = 1.1e-139, Sum P(6) = 1.1e-139
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 71 EEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD-DESLDGQRSIKKQRIEKRGKKENNQ 129
E+ G DDD Y + +ED G + SD +E+++ R KK++++K+ KK+ N
Sbjct: 88 EDDDGDNSDDD---YSLDEDDEDGGGDGENNDSDQEEAIEVGRK-KKRQVKKKSKKDENG 143
Query: 130 NVRKPNP 136
+ P
Sbjct: 144 EPKVKTP 150
Score = 59 (25.8 bits), Expect = 1.1e-139, Sum P(6) = 1.1e-139
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 1383 IANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLV 1442
+ANQ++ ++ Y + C + C+ S N + E C P+C G+++
Sbjct: 1367 LANQLQLNIRTYLKQYNDWDLRCTE--CEKV--SKNYK-----ETSYRCAR-PQCRGKMI 1416
Query: 1443 RKYTEADLYKQLTYFCHL 1460
+ T + L+ Q+++F L
Sbjct: 1417 QIMTSSKLFNQISFFSKL 1434
Score = 54 (24.1 bits), Expect = 1.2e-138, Sum P(6) = 1.2e-138
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 59 EDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDE-SLD 109
E E+D R+ + R FI D G + ++ED +SDD+ SLD
Sbjct: 53 ETEFDK--EERKRKNRDFIEGDSGYRETSDNEDEDEDEDDDGDNSDDDYSLD 102
Score = 52 (23.4 bits), Expect = 1.1e-139, Sum P(6) = 1.1e-139
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 199 NIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEESKELKWESDNSTEL 258
N +SF K+NS + NSTNS NS+ +++ + + D+ +L+ D+ +L
Sbjct: 184 NNESFFFDKLKKSNSNTL-NSTNSTL-NSNELSSGGTMSSLDIESMLNDLQSAPDSELDL 241
Query: 259 TK 260
K
Sbjct: 242 EK 243
Score = 47 (21.6 bits), Expect = 6.4e-138, Sum P(6) = 6.4e-138
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 79 DDDGLGYG---DEGQEEDWSVAGLPS------SSDDESLDGQRSIKKQRIEKRGKKEN 127
D+DG G G D QEE V S DE+ G+ +K R++K +K+N
Sbjct: 105 DEDGGGDGENNDSDQEEAIEVGRKKKRQVKKKSKKDEN--GEPKVKTPRVKKTKEKKN 160
Score = 41 (19.5 bits), Expect = 8.1e-138, Sum P(6) = 8.1e-138
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1463 TQRGIEKMEISAKIPLEKELNKIR 1486
++ G + + AKIPL+K N+++
Sbjct: 1349 SESGFDCNQCHAKIPLKKLANQLQ 1372
Score = 41 (19.5 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 845 KETKMAKQRS----NHGVEDRNVEELTNEDANFDNDTSHNDH 882
KE + K R + G + + E +ED + D D S +D+
Sbjct: 58 KEERKRKNRDFIEGDSGYRETSDNEDEDEDEDDDGDNSDDDY 99
Score = 38 (18.4 bits), Expect = 2.3e-71, Sum P(3) = 2.3e-71
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 848 KMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
K Q E + +E+L ++ FD + +R
Sbjct: 31 KRTDQLQEEDDERKRLEQLKEQETEFDKEERKRKNR 66
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 623 (224.4 bits), Expect = 6.1e-139, Sum P(6) = 6.1e-139
Identities = 134/302 (44%), Positives = 196/302 (64%)
Query: 560 KTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFN 619
+T + K + +EIV+ASVV D P+ A +W P L F++VR+LDG +P G
Sbjct: 287 QTTWCKVEVAHEIVAASVVHLSGVSPDAPLAAKDWSNPQRLRSFSIVRRLDGQAWPAGME 346
Query: 620 -----KEATDR---NSKAGS-N--VLCCESSERALLNRLMIELYKLDSDVLVGHNISGFD 668
+ AT R NS AG+ N ++ + SER+LL L+ L LD+DVLVGHN++ FD
Sbjct: 347 AAAAAENATPRGRANSGAGNANGPLVALQGSERSLLTCLLARLQSLDADVLVGHNVAAFD 406
Query: 669 LDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF 728
L LL R Q +VP +WS+IGR+K++E P+L G FG GA G+M+ +AGRL+CDT+
Sbjct: 407 LTTLLSRMQHHKVP--LWSRIGRVKKTEFPRLTGGGHTFGGGAGAGVMATVAGRLMCDTY 464
Query: 729 LCSRDLLREVSYSLTQLAKTQLNKDRKE------VGPHDVL-KMFQTLESLMELIEYGET 781
L +R+L++ V ++L LA++ L + R + G + L F + E ++ L+ +GE+
Sbjct: 465 LSARELVKSVDFTLGTLAQSLLGQQRSDPLAGSNAGNNSGLGACFGSAEGVLRLLRHGES 524
Query: 782 DAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKF 841
DAWL++ +MFHLSVLPLT+QL+ +SG LW +TL G RA R+E LLLH F ++K+IVPDK
Sbjct: 525 DAWLALGIMFHLSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHEFHSRKFIVPDKQ 584
Query: 842 TY 843
+Y
Sbjct: 585 SY 586
Score = 336 (123.3 bits), Expect = 6.1e-139, Sum P(6) = 6.1e-139
Identities = 72/144 (50%), Positives = 94/144 (65%)
Query: 1066 QEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPY--EVIERKGLDMVRRDWS 1123
+EVNK+YK LEI+LDG + DG EV+E+KGLD+VRRDW
Sbjct: 692 REVNKRYKLLEIELDGVFKSILLLKKKKYAAVKLE-PDGQGRLAEVMEQKGLDIVRRDWC 750
Query: 1124 LLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEA 1183
LSK+VG+F L+ +LS R E+VV IH L +V E +R+GQ+ + K++ITK LTK PE
Sbjct: 751 PLSKDVGNFALAAVLSGRGREEVVGEIHAHLRQVAERVRAGQIPMGKFIITKQLTKRPED 810
Query: 1184 YPDAKNQPHVQVALRLKQSGYSTG 1207
YPDAKNQPHVQVA+R + +G G
Sbjct: 811 YPDAKNQPHVQVAMRRRAAGKRDG 834
Score = 240 (89.5 bits), Expect = 6.1e-139, Sum P(6) = 6.1e-139
Identities = 70/243 (28%), Positives = 115/243 (47%)
Query: 314 DEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKVKA-GSTHHSCCVV 372
D G G + + + G LPFY+LDA+E A G + LFGK++A G SC V
Sbjct: 94 DGGDDGEDDTKQAGKKRKKGVLPFYLLDAYEN-PDARPGEVVLFGKIEAEGGRWQSCAVA 152
Query: 373 VKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
V+ +QR + +P +F+ D + + ++ A K D A K E+ L
Sbjct: 153 VRGLQRTLIVVPRREVFE---------DGDGAIVAMHAAVKA--DPAR--KPELMKMLQM 199
Query: 433 LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYP----FKDPPLPADLKGENFCSLLGT 488
+ + + + YAF ++P GE +V+K+ YP PP G+ +C++ G
Sbjct: 200 WSAAGGVFLEGIKFYAFENRDVPHGEQWVIKVRYPGHLPVLQPPASGCFSGKTYCAIFGA 259
Query: 489 HSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAE 548
+ S LE R++KGP W+ I + + +WCK E+ +I V++S H++
Sbjct: 260 NQSTLE-----RRIKGPGWMGICSPTRVEYGNQTTWCKVEVA----HEI-VAASVVHLSG 309
Query: 549 VPP 551
V P
Sbjct: 310 VSP 312
Score = 213 (80.0 bits), Expect = 3.1e-111, Sum P(5) = 3.1e-111
Identities = 60/153 (39%), Positives = 90/153 (58%)
Query: 888 GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER----SPDGLVPHLP 943
GP YAGGLVLEPKKGLYDK +++LDFNSLYPSIIQEYNICFTT + S G +
Sbjct: 596 GPKYAGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEYNICFTTAIKLTANSMYGCLGFGA 655
Query: 944 SSKTTGVLPELLKNLVQRRRMVKTWMKT---ASGLKIQ-QLDIQQQALKLTANSMYGCLG 999
S L EL+ Q R ++ + + A G +I+ +++ + + L++ + ++ +
Sbjct: 656 SRFYAQPLAELIT--AQGRSILSSTVDLEARALGARIKREVNKRYKLLEIELDGVFKSIL 713
Query: 1000 FSNSRFYA----KP-----LAELITQQGREILR 1023
+ YA +P LAE++ Q+G +I+R
Sbjct: 714 LLKKKKYAAVKLEPDGQGRLAEVMEQKGLDIVR 746
Score = 182 (69.1 bits), Expect = 6.1e-139, Sum P(6) = 6.1e-139
Identities = 40/62 (64%), Positives = 45/62 (72%)
Query: 977 IQQLDIQ-QQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL 1035
IQ+ +I A+KLTANSMYGCLGF SRFYA+PLAELIT QGR IL STVDL L
Sbjct: 629 IQEYNICFTTAIKLTANSMYGCLGFGASRFYAQPLAELITAQGRSILSSTVDLEARALGA 688
Query: 1036 EV 1037
+
Sbjct: 689 RI 690
Score = 129 (50.5 bits), Expect = 6.1e-139, Sum P(6) = 6.1e-139
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y +K E +YD V E +Y +V +RR+ A F+VDDDG GY D G+++ + +
Sbjct: 38 YEVKEEAAVYDVVDEQQYAEIVKKRRD-AGDFVVDDDGAGYHDIGEDDYFQERPVEDDGG 96
Query: 105 DESLDGQRSIKKQRIEKRG 123
D+ D + K+R K+G
Sbjct: 97 DDGEDDTKQAGKKR--KKG 113
Score = 117 (46.2 bits), Expect = 6.1e-139, Sum P(6) = 6.1e-139
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 1261 IHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGC 1320
IHPVVSRL + IEGT +ADCLGLDP++ L+ ++E +R C
Sbjct: 838 IHPVVSRLVSPIEGTDAAHIADCLGLDPAR-------------GGTLM---DEDENFRSC 881
Query: 1321 EPLILSCPS 1329
PL+L+ PS
Sbjct: 882 GPLLLTSPS 890
Score = 84 (34.6 bits), Expect = 1.7e-135, Sum P(6) = 1.7e-135
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 1313 DEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEE 1372
++E +R C PL+L+ PS + F V V ++ PE + L P +
Sbjct: 874 EDENFRSCGPLLLTSPS-GACFPLRGVDD-----VLKEAIMPE------QLLTPPDALGD 921
Query: 1373 VEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDET 1409
A +SP + NQV +A V+ YY G++ DDET
Sbjct: 922 PTA-TVSPAALINQVLLRAREAVARYYDGVLRPDDET 957
Score = 39 (18.8 bits), Expect = 3.4e-54, Sum P(5) = 3.4e-54
Identities = 16/88 (18%), Positives = 33/88 (37%)
Query: 776 IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE-YLLLHAFRAKK 834
+EYG W +E+ H V L+ +S + + QR+ + ++ +
Sbjct: 282 VEYGNQTTWCKVEVA-HEIVAASVVHLSGVSPDAPLAAKDWSNPQRLRSFSIVRRLDGQA 340
Query: 835 YIVPDKFTYVKETKMAKQRSNHGVEDRN 862
+ + E + R+N G + N
Sbjct: 341 WPAGMEAAAAAENATPRGRANSGAGNAN 368
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 1141 (406.7 bits), Expect = 5.0e-136, Sum P(3) = 5.0e-136
Identities = 297/824 (36%), Positives = 427/824 (51%)
Query: 528 EITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
++ V + ++S+ K P +TVTAI+++T+ N + + E+VS S+ D
Sbjct: 502 QVEVVVDRPSQISTIDKDAPSSPNLTVTAISMQTMLNAKTNKQEVVSVSLATYFDLPQDA 561
Query: 588 PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRL 647
P+ SE KP + FT+ R + FP + A K G + C S E+ LLN L
Sbjct: 562 PI--SEDIKPDDV--FTLARPVGSVSFPPRLQQLA----EKGGFQLRTCPS-EKVLLNAL 612
Query: 648 MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-KLRKGRTI 706
++ LD DV +GH + LDVL+HR V + WS +GR R + P + K +
Sbjct: 613 AAKIKSLDPDVFIGHRLENISLDVLVHRMNDNNVVT--WSALGRRNRRQWPYMINKSNSS 670
Query: 707 FGSGASPGIMSCIAGRLLCDTFL-CSRDLLREV-SYSLTQLAKTQLNKDRKEVG-PHDVL 763
+ + I GRLLCD + L + S+ L ++ +K V + L
Sbjct: 671 YNNSLL--IRDVFQGRLLCDIANEMGQSLTMKCQSWDLHEMYDVVCHKKHSPVEINYQNL 728
Query: 764 KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
K + + ++ E + + E+ F +L L++QLTNI+GN W TL G RA R E
Sbjct: 729 KYAEDAHLFLMALKENELNVKQTAEIAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNE 788
Query: 824 YLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHR 883
Y+LLH F+ YIVPDK E K K S ++ VE EDA T+ ++
Sbjct: 789 YILLHEFKRNNYIVPDK-----EDKTHKNTSYQ--QEARVEN-AEEDA-----TTATSNK 835
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL----- 938
K P Y GGLV EP+KGL+ Y+L++DFNSLYPSIIQE+NICFTTV R +
Sbjct: 836 K----PKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVNRDRFNITHDEN 891
Query: 939 --VPHLPSSKT-TGVLPELLKNLVQRRRMVKTWMKTASGLKIQ--QLDIQQQALKLTANS 993
+P LP T +GVLP LL LV RRR VK +K Q Q DI+QQALKLTANS
Sbjct: 892 KDMPILPERDTESGVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQYDIKQQALKLTANS 951
Query: 994 MYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXX 1053
MYGCLG+ NSRFYAKPLA L+T +GREIL T L +++ +L V+YGDTDS+MI +
Sbjct: 952 MYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESS-SLRVVYGDTDSVMIDTGASS 1010
Query: 1054 XXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEV--IE 1111
+VN++Y+ LEID+D E +E
Sbjct: 1011 YQEAIKIGEQFKVQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNASINKATNEETATLE 1070
Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKY 1171
KGLDM RR++ LSK++ F L++ILS+ E + +++ L ++ +++ ++ ++KY
Sbjct: 1071 VKGLDMRRREYCQLSKDISTFVLTKILSDSDPETALLEVYDYLDDMKGKIQNNEIPIDKY 1130
Query: 1172 VITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVG 1231
I L+K P++YP+ K+ P VQVALRL++ G AG + Y+I + S+V
Sbjct: 1131 KINTKLSKDPKSYPNGKSMPQVQVALRLREEGKVI--KAGSVITYVITAAKDDGDNSTV- 1187
Query: 1232 IAQRARHPDEL-KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSK 1290
A+RAR EL K D D +YY +QI V RL IEG R+A LG+D +
Sbjct: 1188 -AERARAIQELLSKKDPDLKPDANYYLEKQIFAPVERLLERIEGIDMVRVATSLGIDTKR 1246
Query: 1291 FQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCPSCSSTF 1334
+ + + D+ER+R L+L C C S+F
Sbjct: 1247 YILRVKNSDANGEILPIESNISDKERFRATSYLVLHC-KCGSSF 1289
Score = 524 (189.5 bits), Expect = 9.7e-59, Sum P(3) = 9.7e-59
Identities = 151/469 (32%), Positives = 229/469 (48%)
Query: 413 KKLQDVALGLKTEIANQLL-NLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP 471
KKL A+ + EI LL N N+ P ++YAF A+IP Y LK+ PF +
Sbjct: 388 KKL--TAIDVLEEIQPLLLANYNLEELRAKPEVKKYAFELADIPKEAEY-LKVLLPFNNE 444
Query: 472 P----LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKY 527
+PA+++G F + GT+++ E F+++R + GP WL I + A Q S C+
Sbjct: 445 TNRNIMPANIEGSTFRHVFGTNANMFESFIMQRNIMGPCWLEI-RGGDFDAMQNASHCQV 503
Query: 528 EITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDT 587
E+ VD P I S+ K P +TVTAI+++T+ N + + E+VS S+ D
Sbjct: 504 EVVVDRPSQI--STIDKDAPSSPNLTVTAISMQTMLNAKTNKQEVVSVSLATYFDLPQDA 561
Query: 588 PMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRL 647
P+ SE KP + FT+ R + FP + A K G + C S E+ LLN L
Sbjct: 562 PI--SEDIKPDDV--FTLARPVGSVSFPPRLQQLA----EKGGFQLRTCPS-EKVLLNAL 612
Query: 648 MIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-KLRKGRTI 706
++ LD DV +GH + LDVL+HR V + WS +GR R + P + K +
Sbjct: 613 AAKIKSLDPDVFIGHRLENISLDVLVHRMNDNNVVT--WSALGRRNRRQWPYMINKSNSS 670
Query: 707 FGSGASPGIMSCIAGRLLCDTFL-CSRDLLREV-SYSLTQLAKTQLNKDRKEVG-PHDVL 763
+ + I GRLLCD + L + S+ L ++ +K V + L
Sbjct: 671 YNNSLL--IRDVFQGRLLCDIANEMGQSLTMKCQSWDLHEMYDVVCHKKHSPVEINYQNL 728
Query: 764 KMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVE 823
K + + ++ E + + E+ F +L L++QLTNI+GN W TL G RA R E
Sbjct: 729 KYAEDAHLFLMALKENELNVKQTAEIAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNE 788
Query: 824 YLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDAN 872
Y+LLH F+ YIVPDK + +Q + VE+ E+ T +N
Sbjct: 789 YILLHEFKRNNYIVPDKEDKTHKNTSYQQEAR--VENAE-EDATTATSN 834
Score = 116 (45.9 bits), Expect = 5.0e-136, Sum P(3) = 5.0e-136
Identities = 41/167 (24%), Positives = 75/167 (44%)
Query: 1366 CPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLI 1422
C KC A +++ + + +++ +++YY G ++CDD C TT +++ R I
Sbjct: 1309 CTKCNYTFPAIKLT-SQLESMIRKH----IALYYAGWLVCDDPACGITTRQISVYGKRCI 1363
Query: 1423 GDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD---TQRG-----IEKMEISA 1474
G++ R C G + +Y + LY QL YF + D T+RG ++ +E S
Sbjct: 1364 GNSGRAM------DCKGVMRYRYNDKQLYNQLLYFQSIFDVDKTKRGELRPLVDALEESK 1417
Query: 1475 -----KIP---LEKELNKIRPVVALAASTVQRIRERCAYGWVKLNDI 1513
K+P +E + R + + VQ+ C +V + I
Sbjct: 1418 DKQLPKLPSGQVEALAEQNRELFGICQEVVQKYLGECGRRYVNMGSI 1464
Score = 111 (44.1 bits), Expect = 5.0e-136, Sum P(3) = 5.0e-136
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 51 NPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLP---SSSDDES 107
N IYD V ED Y R + FIVDD+G GY D G + DW A P S ++ES
Sbjct: 35 NEIYDEVDEDTYRQH-KRNQLMNDDFIVDDNGEGYVDNGAD-DWDDASRPNYYSDEENES 92
Query: 108 LDGQRSIKKQ-RIEKRGKKENNQNVRKP 134
+ ++ KK+ + K K +N KP
Sbjct: 93 MGSRKRRKKEDKTTKVAKTSQIRNFFKP 120
Score = 46 (21.3 bits), Expect = 3.5e-129, Sum P(3) = 3.5e-129
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 84 GYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
G D ++ + ++ + + D+ LD +++I K K+ NN N+ K
Sbjct: 123 GVSDSKKKLETNIDDILNDFGDD-LDKKKNIPKAFSNSINKEVNNHNINK 171
Score = 40 (19.1 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 399 KDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGE 458
K AE++ + MA ++ +V + A Q+L+L S + + ++ + AG
Sbjct: 729 KYAEDAHLFLMALKENELNVKQTAEIAFATQILSL--SKQLTNIAGNAWSHTLSGTRAGR 786
Query: 459 N-YVL 462
N Y+L
Sbjct: 787 NEYIL 791
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 868 (310.6 bits), Expect = 7.2e-136, Sum P(5) = 7.2e-136
Identities = 215/590 (36%), Positives = 320/590 (54%)
Query: 859 EDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYP 918
++ N + N +N + + +K K Y GGLV EP+KGL+ Y+L++DFNSLYP
Sbjct: 815 KEGNRSRAQKQRQNEENADAPVNSKKAK----YQGGLVFEPEKGLHKNYVLVMDFNSLYP 870
Query: 919 SIIQEYNICFTTVERSPDGL--VPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASGL 975
SIIQE+NICFTTV+R+ + + +P +P S+ GVLP LL NLV RRR VK MKT +
Sbjct: 871 SIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVLPRLLANLVDRRREVKKVMKTETDP 930
Query: 976 -KIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
K Q DI+QQALKLTANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T L ++ +N
Sbjct: 931 HKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES-MN 989
Query: 1035 LEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXX 1094
L V+YGDTDS+MI + + VN++Y+ LEID+D
Sbjct: 990 LLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKY 1049
Query: 1095 XXXXXQF-KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNS 1153
K+G V+E KGLDM RR++ LS++V L+ ILS++ E+ ++ +++
Sbjct: 1050 AALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYDY 1109
Query: 1154 LMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDT 1213
L ++ + + + ++KY I L+K P+AYP KN P VQVALR++++G AG
Sbjct: 1110 LEDIRIKVETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGRVV--KAGSV 1167
Query: 1214 VPYIICCEQGTSSGS---SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
+ ++I + + + ++ +A+RA +E+ + D YY +QI V RL
Sbjct: 1168 ITFVITKQDEIDNAADTPALSVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVERLLE 1227
Query: 1271 SIEGTSPERLADCLGLDPSKF---QXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSC 1327
I+ + RL++ LGLD K+ + L + D ER++ L LSC
Sbjct: 1228 RIDSFNVVRLSEALGLDSKKYFRREGGNNNGEDINNLQPLETTITDVERFKDTVTLELSC 1287
Query: 1328 PSCSSTFDCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQV 1387
PSC F + SS VS YN L+C C E++ +P + +Q+
Sbjct: 1288 PSCDKRFPFGGIVSSNYYRVS---------YN---GLQCKHC-EQL----FTPLQLTSQI 1330
Query: 1388 KRQADGFVSMYYKGLMMCDDETCKYTTCSLNL---RLIGDAERGTVCPNY 1434
+ +S+YY G + CDD TC T +++ R + D G + Y
Sbjct: 1331 EHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVFGKRCLNDGCTGVMRYKY 1380
Score = 455 (165.2 bits), Expect = 7.2e-136, Sum P(5) = 7.2e-136
Identities = 133/449 (29%), Positives = 229/449 (51%)
Query: 425 EIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP-----LPADLK 478
EI L++ + N P K +Y+F +IP+ +Y LK+ P++ P +P+DL
Sbjct: 409 EIIPLLMDKYGLDNIRAKPQKMKYSFELPDIPSESDY-LKVLLPYQTPKSSRDTIPSDLS 467
Query: 479 GENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIR 538
+ F + G +S+ E F+++ ++ GP WL I K + + + S C E++VD P++I
Sbjct: 468 SDTFYHVFGGNSNIFESFVIQNRIMGPCWLDI-KGADFNSIRNASHCAVEVSVDKPQNIT 526
Query: 539 VSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPG 598
+++ +P + +++++T+ N +++ EIVS ++ +D+P+ E KP
Sbjct: 527 PTTTKT----MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPI--PENIKPD 580
Query: 599 MLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
L T+VR FP+G A + G L ++E+A+L+ L D DV
Sbjct: 581 DLC--TLVRPPQSTSFPLGL--AALAKQKLPGRVRLF--NNEKAMLSCFCAMLKVEDPDV 634
Query: 659 LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSC 718
++GH + LDVL HR +P+ +S IGR R P+ + GR S + +S
Sbjct: 635 IIGHRLQNVYLDVLAHRMHDLNIPT--FSSIGRRLRRTWPE-KFGRG--NSNMNHFFISD 689
Query: 719 I-AGRLLCDTFL-CSRDLLREV-SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT-LESLME 774
I +GRL+CD + L + S+ L+++ + K+ K + +Q + S+
Sbjct: 690 ICSGRLICDIANEMGQSLTPKCQSWDLSEMYQVTCEKEHKPLDIDYQNPQYQNDVNSMTM 749
Query: 775 LIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKK 834
++ T+ +S E+ + + +L LT+QLTN++GN W +TL G RA R EY+LLH F
Sbjct: 750 ALQENITNCMISAEVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNG 809
Query: 835 YIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
+IVPDK ++ KQR N D V
Sbjct: 810 FIVPDKEG--NRSRAQKQRQNEENADAPV 836
Score = 136 (52.9 bits), Expect = 1.4e-54, Sum P(5) = 1.4e-54
Identities = 42/148 (28%), Positives = 72/148 (48%)
Query: 1359 NFWRT----LRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTT 1414
N++R L+C C E++ +P + +Q++ +S+YY G + CDD TC T
Sbjct: 1303 NYYRVSYNGLQCKHC-EQL----FTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVT 1357
Query: 1415 CSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISA 1474
+++ G C N C G + KY++ LY QL YF L D ++ +K E+
Sbjct: 1358 RQVSVF-------GKRCLN-DGCTGVMRYKYSDKQLYNQLLYFDSLFDCEKN-KKQELKP 1408
Query: 1475 KIPLEKELNKIRPVVALAASTVQRIRER 1502
I L +L+ P L S+++ + E+
Sbjct: 1409 -IYLPDDLDY--PKEQLTESSIKALTEQ 1433
Score = 132 (51.5 bits), Expect = 7.2e-136, Sum P(5) = 7.2e-136
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 53 IYDTVAEDEYDALVARRREEAR--GFIVDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDG 110
IYD + E EY A R+R+E F+VDDDG+GY D G EEDW SSSD+++ G
Sbjct: 36 IYDEIDEKEYRA---RKRQELLHDDFVVDDDGVGYVDRGVEEDWREVD-NSSSDEDT--G 89
Query: 111 QRSIKKQRIEKRGKKENNQNV 131
+ K + +K K+E + +
Sbjct: 90 NLASKDSKRKKNIKREKDHQI 110
Score = 48 (22.0 bits), Expect = 7.2e-136, Sum P(5) = 7.2e-136
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 353 TLYLFGKVKAGSTHH-SCCVVVKNMQRCVYAIPNGPLFQTD---EIMKLEKDA---EESR 405
TL LFGKVK + S V + + R ++ +P TD EI+ L D + R
Sbjct: 365 TLILFGKVKLKDDNCVSAMVQINGLCRELFFLPREGKTPTDIHEEIIPLLMDKYGLDNIR 424
Query: 406 ISP--MAFRKKLQDV 418
P M + +L D+
Sbjct: 425 AKPQKMKYSFELPDI 439
Score = 42 (19.8 bits), Expect = 6.5e-45, Sum P(5) = 6.5e-45
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 1014 ITQQGREILRSTVDLVQNNLN 1034
+T+Q RE++ + +VQ LN
Sbjct: 1430 LTEQNRELMETGRSVVQKYLN 1450
Score = 42 (19.8 bits), Expect = 4.9e-11, Sum P(5) = 4.9e-11
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDA 783
LA NK R E+ ++ Q ES+ L+ YG+TD+
Sbjct: 966 LAMLVTNKGR-EI----LMNTRQLAESMNLLVVYGDTDS 999
Score = 40 (19.1 bits), Expect = 1.6e-82, Sum P(2) = 1.6e-82
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 46 NIKLENPIYDTVAEDEYDALV 66
NI L++PI + + D+ LV
Sbjct: 566 NISLDSPIPENIKPDDLCTLV 586
Score = 37 (18.1 bits), Expect = 7.2e-136, Sum P(5) = 7.2e-136
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 200 IKSFVSVNSVKTNSQLVTNSTNSVKEN 226
IK S+++N+ + T + N KE+
Sbjct: 317 IKGLTPSKSLQSNTDVATLAVNVKKED 343
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 1122 (400.0 bits), Expect = 1.7e-131, Sum P(3) = 1.7e-131
Identities = 281/727 (38%), Positives = 395/727 (54%)
Query: 637 ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
E SE+ LL++ + ++D DVL+GH + DL +LL R + + P W ++GRLKR E
Sbjct: 610 EKSEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSRLKEKKTPG--WHRLGRLKRGE 667
Query: 697 MPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREV-SYSLTQLAKTQLNKD 753
PK KG F +AGRL+CD + L+ + S+SLT++ L
Sbjct: 668 WPKNFNKGGGFFTE------RHLVAGRLVCDVANDMGKSLMMKCQSWSLTEMCDLYLGSG 721
Query: 754 --RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
R+++ LK + T + L+ + + +TD + L+ L +L LT+ LTNI+GN W
Sbjct: 722 NGRQDLDIDAALKTWATSKDGLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSW 781
Query: 811 GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
+TL G RA+R EY+LLH F KYI PDK++ +K+ K EE+ E
Sbjct: 782 ARTLSGTRAERNEYILLHEFYKNKYICPDKYS----SKLQK-----------AEEIAQEG 826
Query: 871 ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
D D + + +K K Y GGLV EP++GLYD+Y+L++DFNSLYPSIIQEYNICFTT
Sbjct: 827 ---DEDDATDKKKKDK----YKGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTT 879
Query: 931 VERSP------DGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLD 981
V+R+ D VP +P+S G+LP L+ LV RRR VK MK A+ ++ D
Sbjct: 880 VDRTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWD 939
Query: 982 IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
+Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +LV++ L VIYGD
Sbjct: 940 TKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESK-QLRVIYGD 998
Query: 1042 TDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQF 1101
TDS+MI++ + VN++YK LEID+D
Sbjct: 999 TDSVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTE 1058
Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
DG + +E KGLDM RR++ LSKE L++ILS E V+ +H+ L ++ +M
Sbjct: 1059 VDGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNM 1118
Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
R + ++KYVI L+K PE YP+ + P QVALR G + D + YI+
Sbjct: 1119 REYTIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKTV--RPNDVISYIVT-- 1174
Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
G S SS+ A+R+ ++ K D + DI++Y +QI P + RLCA I GT RLA
Sbjct: 1175 SGDSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLA 1234
Query: 1282 DCLGLDPSKFQXXXXXXXXXXXXXX--LLFAVGDEERYRGCEPLILSCPSCS--STFDCP 1337
+CLGLD K+Q L + D R+ L L+C C S F+
Sbjct: 1235 ECLGLDVRKYQINTTTTNSTQNTEIFPLESQIPDSVRFESAARLTLTCRRCKERSVFEGL 1294
Query: 1338 AVCSSIC 1344
A +C
Sbjct: 1295 AASIHMC 1301
Score = 518 (187.4 bits), Expect = 8.6e-79, Sum P(4) = 8.6e-79
Identities = 159/504 (31%), Positives = 247/504 (49%)
Query: 368 SCCVV--VKNMQRCVYAIPNGPLFQTDEIM-KLEKDAEESRISPMAFRKKLQDVAL-GLK 423
S C+ VKN Q YA + D I+ KL E R R+ ++V + +
Sbjct: 355 SLCLFGKVKNKQNGSYA---SAFVKVDSILRKLYFLPREYRHK--GGRETDEEVDMEDVY 409
Query: 424 TEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFC 483
E+ + L V + + R+YAF IP Y LK+ YP+ P LP D KGE F
Sbjct: 410 HEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEY-LKLLYPYDKPALPMDTKGETFS 468
Query: 484 SLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSS 543
+ GT++S E F++ + + GP WL I + + A SWCK+E P I S
Sbjct: 469 HVFGTNTSLFEQFVLWKNIMGPCWLKIEE-ADFSAVNNASWCKFECQTSKPGLISPVPDS 527
Query: 544 KHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--S 601
+++ + P +T+ ++ +T N +++ EI+ AS A++ + +E P L
Sbjct: 528 ENL-DPPTLTLISLAFRTQLNVKENKQEILVAS------ARVYENISLTETTPPEKLPCK 580
Query: 602 HFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVG 661
FTV+R G +P+ F EA R + G+ +L E SE+ LL++ + ++D DVL+G
Sbjct: 581 TFTVMRPA-GSSYPVNF--EAEIRKQR-GTYML--EKSEQMLLSKFLALFERMDPDVLMG 634
Query: 662 HNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSG-ASPGIMSCI 719
H + DL +LL R + + P W ++GRLKR E PK KG F G + C
Sbjct: 635 HQLQEVDLSILLSRLKEKKTPG--WHRLGRLKRGEWPKNFNKGGGFFTERHLVAGRLVCD 692
Query: 720 AGRLLCDTFL--CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELI 776
+ + + C L E + L N R+++ LK + T + L+ +
Sbjct: 693 VANDMGKSLMMKCQSWSLTE----MCDLYLGSGN-GRQDLDIDAALKTWATSKDGLVNFV 747
Query: 777 EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
+ +TD + L+ L +L LT+ LTNI+GN W +TL G RA+R EY+LLH F KYI
Sbjct: 748 THCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFYKNKYI 807
Query: 837 VPDKFTYVKETKMAKQRSNHGVED 860
PDK Y + + A++ + G ED
Sbjct: 808 CPDK--YSSKLQKAEEIAQEGDED 829
Score = 270 (100.1 bits), Expect = 8.6e-79, Sum P(4) = 8.6e-79
Identities = 105/400 (26%), Positives = 168/400 (42%)
Query: 1131 DFC-LSQILSERSCEDVVESIHNSLM--KVQEDMRSGQVALEKYVIT--KTL--TKPPEA 1183
++C LS+ S+R +++ L+ +V + +R + +Y I K + TK +
Sbjct: 1078 EYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKR 1137
Query: 1184 YPDAKNQPHVQVA-LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
+ N+ + A + L++ D + YI+ G S SS+ A+R+ ++
Sbjct: 1138 PEEYPNKETMPPAQVALRELARGKTVRPNDVISYIVT--SGDSETSSLPPAKRSYTLQDV 1195
Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXX 1302
K D + DI++Y +QI P + RLCA I GT RLA+CLGLD K+Q
Sbjct: 1196 IKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLAECLGLDVRKYQINTTTTNSTQ 1255
Query: 1303 XXXX--LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNF 1360
L + D R+ L L+C C + +SI M KP +
Sbjct: 1256 NTEIFPLESQIPDSVRFESAARLTLTCRRCKERSVFEGLAASIHMC------KPTGLF-- 1307
Query: 1361 WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL- 1419
CP IS I Q++ Q S YY+G ++CD+ TC T +++
Sbjct: 1308 --------CPNSSCGNPISTLTIIAQLESQIRAQTSKYYEGWLVCDESTCGNRTRQISVY 1359
Query: 1420 --RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRG---IEKMEISA 1474
R +G RG C GR+ +Y+E +Y QL YF L D + EK
Sbjct: 1360 GHRCLGP--RGQA----EGCLGRMAYEYSEKQMYNQLLYFASLWDVDKARAAAEKESNEE 1413
Query: 1475 K---IPLEKELNKIRPVVALAASTVQRIRERCAYGWVKLN 1511
K I E N++R V ++C WV+++
Sbjct: 1414 KKDSIAALVEFNRVR--FGTIKGVVDAYLKKCGRQWVEMD 1451
Score = 132 (51.5 bits), Expect = 1.7e-131, Sum P(3) = 1.7e-131
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSV-AGLPSS- 102
Y ++ + IY+ V +D Y ++ R +E F+VDD+G GY D+G+E W+ G S
Sbjct: 25 YEVEEQGDIYEEVDDDGYKKIIRNRLDED-DFVVDDNGEGYADDGREV-WNEQTGQYSDE 82
Query: 103 SDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKPNPSLTAA 141
SDD+ L + ++ K++R E++ +KE N + K S AA
Sbjct: 83 SDDDDLPARGKAAKRKREEEKQRKEKINNGISKYFSSGAAA 123
Score = 71 (30.1 bits), Expect = 1.7e-131, Sum P(3) = 1.7e-131
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP 384
+ DGSL F+ LD E N G+L LFGKVK ++ S V V ++ R +Y +P
Sbjct: 337 EQDGSLRFFWLDYTE----VN-GSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLP 388
Score = 39 (18.8 bits), Expect = 1.8e-25, Sum P(3) = 1.8e-25
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 306 VSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM 351
+S V +E K+ +N + E+D D +L A ++ + NM
Sbjct: 1011 ISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINM 1056
Score = 37 (18.1 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 45 YNIKLENPIYDTVAE--DEYDALVARRREEARGFIVDDDGLGYGD 87
Y+ KL+ + +A+ DE DA +++++ +G +V + G D
Sbjct: 812 YSSKLQKA--EEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYD 854
>FB|FBgn0259113 [details] [associations]
symbol:DNApol-alpha180 "DNA polymerase alpha 180kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=NAS] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0051539
GO:GO:0001882 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:D90310 EMBL:S48157 EMBL:AB011813 EMBL:AY070529 PIR:S28079
RefSeq:NP_536736.2 UniGene:Dm.1592 ProteinModelPortal:P26019
SMR:P26019 DIP:DIP-23937N IntAct:P26019 MINT:MINT-206832
STRING:P26019 PaxDb:P26019 EnsemblMetazoa:FBtr0084115 GeneID:42553
KEGG:dme:Dmel_CG6349 CTD:42553 FlyBase:FBgn0259113
OrthoDB:EOG4MPG50 PhylomeDB:P26019 ChEMBL:CHEMBL6039
GenomeRNAi:42553 NextBio:829396 Bgee:P26019 GermOnline:CG6349
Uniprot:P26019
Length = 1488
Score = 978 (349.3 bits), Expect = 1.1e-130, Sum P(3) = 1.1e-130
Identities = 239/589 (40%), Positives = 331/589 (56%)
Query: 886 KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG-LVPHLPS 944
K+ AYAGGLVLEP +GLY+KY+LL+DFNSLYPSIIQEYNICFTTV++ D +P LP
Sbjct: 854 KKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPVDADELPTLPD 913
Query: 945 SKTT-GVLPELLKNLVQRRRMVKTWMKTAS-GLKIQ-QLDIQQQALKLTANSMYGCLGFS 1001
SKT G+LP LK LV+ R+ VK M ++Q Q I+Q ALKLTANSMYGCLGF+
Sbjct: 914 SKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFA 973
Query: 1002 NSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXX 1061
+SRF+A+ LA L+T +GREIL +T LVQ +N +V+YGDTDS+MI++
Sbjct: 974 HSRFFAQHLAALVTHKGREILTNTQQLVQK-MNYDVVYGDTDSLMINTNITDYDQVYKIG 1032
Query: 1062 XXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKD--GMPYEVIERKGLDMVR 1119
+ Q VNK YK LE+D+DG KD G E KGLD+VR
Sbjct: 1033 HNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAIKLS-KDSKGNLRREQEHKGLDIVR 1091
Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
RDWS L+ VG L ++LSE+ E+ ++++H L K++ + G V L +VITK LT+
Sbjct: 1092 RDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTR 1151
Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
P+ Y ++ + PHVQVALR+ + + GD V Y+IC + GT++ + QRA H
Sbjct: 1152 TPQEYANSASLPHVQVALRMNRER-NRRYKKGDMVDYVICLD-GTTNAAM----QRAYHL 1205
Query: 1240 DELKKG-DGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKF----QXX 1294
DELK D K +D +YY QIHPVV+R+ +EGT R+A+CLG+DP+KF Q
Sbjct: 1206 DELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEGTDASRIAECLGMDPTKFRQNAQRT 1265
Query: 1295 XXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKP 1354
LL + YR CEP C +C + M+ + +P
Sbjct: 1266 QRENTEQSEGESLLKTT--LQLYRLCEPFRFQCVTCKT---------EQLMASAYRPGPS 1314
Query: 1355 ETEYNFWRTLRCPKCPEEVEAGRISP-GMIANQVKRQADGFVSMYYKGLMMCDDETCKYT 1413
+ + +C K E + I + NQ++ +V +YK ++CD C +
Sbjct: 1315 NSHIAVLQ--QCAK--SECQTAPIQYLASVRNQLQLSMRQYVQRFYKNWLVCDHPDCNFN 1370
Query: 1414 TCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLD 1462
T + +LR + R +C +G L+R+YTE DLY QL Y + D
Sbjct: 1371 TRTHSLRK--KSHR-PLCQKCR--SGSLLRQYTERDLYNQLCYLRFMFD 1414
Score = 434 (157.8 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 139/427 (32%), Positives = 216/427 (50%)
Query: 614 FPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLL 673
+P+ N E +K S + SERALL+ + + K+D+D++V + L+V+
Sbjct: 618 WPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDSMDCQLNVIT 673
Query: 674 HRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRD 733
+ ++P WS++GRL+ S+ FG ++ GR++CD + +
Sbjct: 674 DQIVALKIPQ--WSRMGRLRLSQS---------FGKR----LLEHFVGRMVCDVKRSAEE 718
Query: 734 LLREVSYSLTQLAKTQLN---KDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMELM 790
+R SY L L K L +R EV D+L+M++ ES+ +LI D + LM
Sbjct: 719 CIRARSYDLQTLCKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLLRLM 778
Query: 791 FHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMA 850
L+++PL Q+TNI GN +TLQG R++R E+LLLHAF K YIVPDK K
Sbjct: 779 CELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDK-------KPV 831
Query: 851 KQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG-----KRGPAYAGGLVLEPKKGLYD 905
+RS G D L+ DA + G RG Y ++L LY
Sbjct: 832 SKRSGAGDTDAT---LSGADATMQTKKKAA-YAGGLVLEPMRG-LYEKYVLLMDFNSLYP 886
Query: 906 KYILLLDFNSLYPSIIQEYNICFTTVERSPDGLV-PH-LPSSKTTGVLPELLKNLVQRRR 963
++ ++N + ++ Q + + PD P LP L L+++ + ++
Sbjct: 887 S--IIQEYNICFTTVQQPVDA--DELPTLPDSKTEPGILPLQ-----LKRLVESRKEVKK 937
Query: 964 MVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILR 1023
++ + L++Q I+Q ALKLTANSMYGCLGF++SRF+A+ LA L+T +GREIL
Sbjct: 938 LMAA-PDLSPELQMQY-HIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGREILT 995
Query: 1024 STVDLVQ 1030
+T LVQ
Sbjct: 996 NTQQLVQ 1002
Score = 337 (123.7 bits), Expect = 1.1e-130, Sum P(3) = 1.1e-130
Identities = 97/332 (29%), Positives = 163/332 (49%)
Query: 368 SCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIA 427
S C+ V+N+ R +Y +P F D I K P + + D+ +E+A
Sbjct: 391 SVCLRVQNINRVLYLLPRQ--FLLDPISK----------EPTKQKVTVADIYKEFDSEVA 438
Query: 428 NQL-LNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDP-P-LPADLKGENFCS 484
NQL L S + +A G E+P +Y L+++Y K P P L AD K +
Sbjct: 439 NQLKLEFFRSRKVTKSFAH-HAIG-IEVPQSCDY-LEVHYDGKKPLPNLSADKKYNSIAH 495
Query: 485 LLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSK 544
+ G ++ALE FL+ RK+KGP WL ++ F P P +SWC E+T+ PK++ +
Sbjct: 496 IFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTP--MSWCNTEVTLTEPKNVELVQDKG 553
Query: 545 HVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHFT 604
A PP+T+ ++N++T N + NEI S++ ++ ID P +P H
Sbjct: 554 KPAPPPPLTLLSLNVRTSMNPKTSRNEICMISMLTHNRFHIDRPA-----PQPAFNRHMC 608
Query: 605 VVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNI 664
+ + +P+ N E +K S + SERALL+ + + K+D+D++V +
Sbjct: 609 ALTRPAVVSWPLDLNFEM----AKYKSTTVHKHDSERALLSWFLAQYQKIDADLIVTFDS 664
Query: 665 SGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
L+V+ + ++P WS++GRL+ S+
Sbjct: 665 MDCQLNVITDQIVALKIPQ--WSRMGRLRLSQ 694
Score = 73 (30.8 bits), Expect = 1.1e-130, Sum P(3) = 1.1e-130
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 53 IYDTVAEDEYDALVARRREEARGFI-VDDDGLGYGDEGQE--EDWSVAGLPSSSDDESLD 109
+YD V E EY A+R +E G +++DG GY ++ ++ ED SD E D
Sbjct: 46 VYDVVDEREY----AKRAQEKYGDDWIEEDGTGYAEDLRDFFEDED-----EYSDGEE-D 95
Query: 110 GQRSIKKQRIEKRGKKENNQNVRKP 134
+ S KK+ + KK +N KP
Sbjct: 96 RKDSKKKKGVAPNSKKRPREN-EKP 119
Score = 47 (21.6 bits), Expect = 6.1e-128, Sum P(3) = 6.1e-128
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 71 EEARGFIVDDDGLGYGDEGQEEDWSVAGL-PSSS-----DDESLDGQRSIK 115
E+ R F D+D G+E +++ G+ P+S +++ + G+ SIK
Sbjct: 77 EDLRDFFEDEDEYSDGEEDRKDSKKKKGVAPNSKKRPRENEKPVTGKASIK 127
Score = 38 (18.4 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 870 DANFDNDTSHNDHRKGKRG---PAYAGGLVLE-PKKGLYDK--YI-LLLDFN-------- 914
D NF N +H+ +K R +G L+ + ++ LY++ Y+ + D
Sbjct: 1366 DCNF-NTRTHSLRKKSHRPLCQKCRSGSLLRQYTERDLYNQLCYLRFMFDLGKQTLQQKP 1424
Query: 915 SLYPSIIQEYNICFTTVER 933
+L P + Q Y + + TV++
Sbjct: 1425 TLTPELEQAYQLLYETVDQ 1443
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 1122 (400.0 bits), Expect = 5.4e-128, Sum P(3) = 5.4e-128
Identities = 281/727 (38%), Positives = 395/727 (54%)
Query: 637 ESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSE 696
E SE+ LL++ + ++D DVL+GH + DL +LL R + + P W ++GRLKR E
Sbjct: 610 EKSEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSRLKEKKTPG--WHRLGRLKRGE 667
Query: 697 MPK-LRKGRTIFGSGASPGIMSCIAGRLLCDTFL-CSRDLLREV-SYSLTQLAKTQLNKD 753
PK KG F +AGRL+CD + L+ + S+SLT++ L
Sbjct: 668 WPKNFNKGGGFFTE------RHLVAGRLVCDVANDMGKSLMMKCQSWSLTEMCDLYLGSG 721
Query: 754 --RKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
R+++ LK + T + L+ + + +TD + L+ L +L LT+ LTNI+GN W
Sbjct: 722 NGRQDLDIDAALKTWATSKDGLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSW 781
Query: 811 GKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNED 870
+TL G RA+R EY+LLH F KYI PDK++ +K+ K EE+ E
Sbjct: 782 ARTLSGTRAERNEYILLHEFYKNKYICPDKYS----SKLQK-----------AEEIAQEG 826
Query: 871 ANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
D D + + +K K Y GGLV EP++GLYD+Y+L++DFNSLYPSIIQEYNICFTT
Sbjct: 827 ---DEDDATDKKKKDK----YKGGLVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTT 879
Query: 931 VERSP------DGLVPHLPSSKTT-GVLPELLKNLVQRRRMVKTWMKT--ASGLKIQQLD 981
V+R+ D VP +P+S G+LP L+ LV RRR VK MK A+ ++ D
Sbjct: 880 VDRTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLALWD 939
Query: 982 IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
+Q A KLTANSMYGCLG++ SRFYA+PLA L T +GREILRST +LV++ L VIYGD
Sbjct: 940 TKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELVESK-QLRVIYGD 998
Query: 1042 TDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQF 1101
TDS+MI++ + VN++YK LEID+D
Sbjct: 999 TDSVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINMTE 1058
Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
DG + +E KGLDM RR++ LSKE L++ILS E V+ +H+ L ++ +M
Sbjct: 1059 VDGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNM 1118
Query: 1162 RSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCE 1221
R + ++KYVI L+K PE YP+ + P QVALR G + D + YI+
Sbjct: 1119 REYTIPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELARGKTV--RPNDVISYIVT-- 1174
Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
G S SS+ A+R+ ++ K D + DI++Y +QI P + RLCA I GT RLA
Sbjct: 1175 SGDSETSSLPPAKRSYTLQDVIKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLA 1234
Query: 1282 DCLGLDPSKFQXXXXXXXXXXXXXX--LLFAVGDEERYRGCEPLILSCPSCS--STFDCP 1337
+CLGLD K+Q L + D R+ L L+C C S F+
Sbjct: 1235 ECLGLDVRKYQINTTTTNSTQNTEIFPLESQIPDSVRFESAARLTLTCRRCKERSVFEGL 1294
Query: 1338 AVCSSIC 1344
A +C
Sbjct: 1295 AASIHMC 1301
Score = 518 (187.4 bits), Expect = 1.1e-76, Sum P(4) = 1.1e-76
Identities = 159/504 (31%), Positives = 247/504 (49%)
Query: 368 SCCVV--VKNMQRCVYAIPNGPLFQTDEIM-KLEKDAEESRISPMAFRKKLQDVAL-GLK 423
S C+ VKN Q YA + D I+ KL E R R+ ++V + +
Sbjct: 355 SLCLFGKVKNKQNGSYA---SAFVKVDSILRKLYFLPREYRHK--GGRETDEEVDMEDVY 409
Query: 424 TEIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFC 483
E+ + L V + + R+YAF IP Y LK+ YP+ P LP D KGE F
Sbjct: 410 HEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEY-LKLLYPYDKPALPMDTKGETFS 468
Query: 484 SLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSS 543
+ GT++S E F++ + + GP WL I + + A SWCK+E P I S
Sbjct: 469 HVFGTNTSLFEQFVLWKNIMGPCWLKIEE-ADFSAVNNASWCKFECQTSKPGLISPVPDS 527
Query: 544 KHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGML--S 601
+++ + P +T+ ++ +T N +++ EI+ AS A++ + +E P L
Sbjct: 528 ENL-DPPTLTLISLAFRTQLNVKENKQEILVAS------ARVYENISLTETTPPEKLPCK 580
Query: 602 HFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVG 661
FTV+R G +P+ F EA R + G+ +L E SE+ LL++ + ++D DVL+G
Sbjct: 581 TFTVMRPA-GSSYPVNF--EAEIRKQR-GTYML--EKSEQMLLSKFLALFERMDPDVLMG 634
Query: 662 HNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK-LRKGRTIFGSG-ASPGIMSCI 719
H + DL +LL R + + P W ++GRLKR E PK KG F G + C
Sbjct: 635 HQLQEVDLSILLSRLKEKKTPG--WHRLGRLKRGEWPKNFNKGGGFFTERHLVAGRLVCD 692
Query: 720 AGRLLCDTFL--CSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL-ESLMELI 776
+ + + C L E + L N R+++ LK + T + L+ +
Sbjct: 693 VANDMGKSLMMKCQSWSLTE----MCDLYLGSGN-GRQDLDIDAALKTWATSKDGLVNFV 747
Query: 777 EYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
+ +TD + L+ L +L LT+ LTNI+GN W +TL G RA+R EY+LLH F KYI
Sbjct: 748 THCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFYKNKYI 807
Query: 837 VPDKFTYVKETKMAKQRSNHGVED 860
PDK Y + + A++ + G ED
Sbjct: 808 CPDK--YSSKLQKAEEIAQEGDED 829
Score = 259 (96.2 bits), Expect = 1.1e-76, Sum P(4) = 1.1e-76
Identities = 100/367 (27%), Positives = 159/367 (43%)
Query: 1131 DFC-LSQILSERSCEDVVESIHNSLM--KVQEDMRSGQVALEKYVIT--KTL--TKPPEA 1183
++C LS+ S+R +++ L+ +V + +R + +Y I K + TK +
Sbjct: 1078 EYCALSKEASQRLLNEILSGDDQELVLNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKR 1137
Query: 1184 YPDAKNQPHVQVA-LRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDEL 1242
+ N+ + A + L++ D + YI+ G S SS+ A+R+ ++
Sbjct: 1138 PEEYPNKETMPPAQVALRELARGKTVRPNDVISYIVT--SGDSETSSLPPAKRSYTLQDV 1195
Query: 1243 KKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXX 1302
K D + DI++Y +QI P + RLCA I GT RLA+CLGLD K+Q
Sbjct: 1196 IKPDSRLKPDIEFYLLKQIFPPIERLCAPIPGTDAVRLAECLGLDVRKYQINTTTTNSTQ 1255
Query: 1303 XXXX--LLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETEYNF 1360
L + D R+ L L+C C + +SI M KP +
Sbjct: 1256 NTEIFPLESQIPDSVRFESAARLTLTCRRCKERSVFEGLAASIHMC------KPTGLF-- 1307
Query: 1361 WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKGLMMCDDETCKYTTCSLNL- 1419
CP IS I Q++ Q S YY+G ++CD+ TC T +++
Sbjct: 1308 --------CPNSSCGNPISTLTIIAQLESQIRAQTSKYYEGWLVCDESTCGNRTRQISVY 1359
Query: 1420 --RLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLTYFCHLLDTQRGIEKMEISAKIP 1477
R +G RG C GR+ +Y+E +Y QL YF L D ++K +A
Sbjct: 1360 GHRCLGP--RGQA----EGCLGRMAYEYSEKQMYNQLLYFASLWD----VDKARAAA--- 1406
Query: 1478 LEKELNK 1484
EKE N+
Sbjct: 1407 -EKESNE 1412
Score = 132 (51.5 bits), Expect = 5.4e-128, Sum P(3) = 5.4e-128
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSV-AGLPSS- 102
Y ++ + IY+ V +D Y ++ R +E F+VDD+G GY D+G+E W+ G S
Sbjct: 25 YEVEEQGDIYEEVDDDGYKKIIRNRLDED-DFVVDDNGEGYADDGREV-WNEQTGQYSDE 82
Query: 103 SDDESLDGQ-RSIKKQRIEKRGKKEN-NQNVRKPNPSLTAA 141
SDD+ L + ++ K++R E++ +KE N + K S AA
Sbjct: 83 SDDDDLPARGKAAKRKREEEKQRKEKINNGISKYFSSGAAA 123
Score = 71 (30.1 bits), Expect = 5.4e-128, Sum P(3) = 5.4e-128
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKVK--AGSTHHSCCVVVKNMQRCVYAIP 384
+ DGSL F+ LD E N G+L LFGKVK ++ S V V ++ R +Y +P
Sbjct: 337 EQDGSLRFFWLDYTE----VN-GSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLP 388
Score = 42 (19.8 bits), Expect = 4.3e-54, Sum P(4) = 4.3e-54
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1205 STGCSAGDTVPYIICCEQGTSSGSSVGIA 1233
STGC++ P+ + E SG +A
Sbjct: 1494 STGCNSSSACPHELDGESDNLSGKCFDLA 1522
Score = 39 (18.8 bits), Expect = 8.6e-24, Sum P(3) = 8.6e-24
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 306 VSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANM 351
+S V +E K+ +N + E+D D +L A ++ + NM
Sbjct: 1011 ISDALKVGEELKTAVNERYKLLEIDIDNVFRRLLLHAKKKYAAINM 1056
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 524 WCKYEITVDSPKDIRVSSSSKHVA 547
W + + D + +R+ S KH A
Sbjct: 1936 WIENYVAEDYTEAVRLGSGKKHSA 1959
Score = 37 (18.1 bits), Expect = 4.7e-14, Sum P(3) = 4.7e-14
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 45 YNIKLENPIYDTVAE--DEYDALVARRREEARGFIVDDDGLGYGD 87
Y+ KL+ + +A+ DE DA +++++ +G +V + G D
Sbjct: 812 YSSKLQKA--EEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYD 854
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 837 (299.7 bits), Expect = 1.1e-127, Sum P(4) = 1.1e-127
Identities = 208/490 (42%), Positives = 270/490 (55%)
Query: 867 TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
++E ++ D +K + Y+GGLVLEPKKGLY+ ILLLDFNSLYPSIIQEYNI
Sbjct: 794 SSESKKKKEESQEGDEKKSGKAQ-YSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852
Query: 927 CFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLD 981
C+TT+E S D VP S+ GVLP ++ LV+ RR VK+ MK+ K +Q+D
Sbjct: 853 CYTTLEYSKDSDEQLSVPQ--STDIEGVLPREIRKLVECRRDVKSLMKSERNEAKKKQMD 910
Query: 982 IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
I+Q ALKLTANSMYGCLGF SRFYAKPLA L+T +GREIL + DLV+ + V+YGD
Sbjct: 911 IRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEK-MGYSVVYGD 969
Query: 1042 TDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQF 1101
TDSIMI++ + + VNK ++ LE+DLDG
Sbjct: 970 TDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALT--I 1027
Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED-VVESIHNSLMKVQED 1160
E E KGLD+VRRDWS L+KE G + +IL D +V SI + L +++
Sbjct: 1028 NPDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAK 1087
Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
+ SG V LE + I+K LT+ PE Y D K Q H VA RL +SG D V Y+IC
Sbjct: 1088 LDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG-KFNLRHNDIVEYVIC- 1145
Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
E GT + ++ QRA H E+ + ID+ YY +QQIHPVVSRL IE T R+
Sbjct: 1146 EDGTDNPAT----QRAYHRTEMAENSAL-KIDLLYYLAQQIHPVVSRLVEPIEETDAVRI 1200
Query: 1281 ADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCP--SCS------S 1332
A+ LGLD + ++ +E Y CE + + CP C
Sbjct: 1201 AENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHSNVIRE 1258
Query: 1333 TFDCPAVCSS 1342
TFDC SS
Sbjct: 1259 TFDCVTDASS 1268
Score = 327 (120.2 bits), Expect = 1.1e-127, Sum P(4) = 1.1e-127
Identities = 83/259 (32%), Positives = 146/259 (56%)
Query: 605 VVRKLDGGIFPMGFNKEA-TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHN 663
+V K GG P K T++ SK +V ++E+ALL + + + + D++VGH+
Sbjct: 569 LVTKPPGGSLPYDIQKRLETEKLSKFVKSV----ANEKALLTLFLAMINEDEPDMIVGHD 624
Query: 664 ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
+S + +L+ R + ++P+ WS+I RLKRS + G+ G S G AGR+
Sbjct: 625 LSA-TIALLVSRLEKLKLPN--WSRISRLKRS----INIGK--IGHSKS-GQWELTAGRM 674
Query: 724 LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDA 783
+ D+ L + +L++ S+ LT+L++ L +R+E+ +++ +++ + L+ LI + D
Sbjct: 675 MLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANEIPQLYVDSKDLISLINWSWNDL 734
Query: 784 WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
LS+ ++ L+ LPL Q++ I G + +T+ G RA+R EYLLLHAF I PDK+
Sbjct: 735 LLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNS 794
Query: 844 VKETKMAKQRSNHGVEDRN 862
E+K K+ S G E ++
Sbjct: 795 -SESKKKKEESQEGDEKKS 812
Score = 273 (101.2 bits), Expect = 5.2e-122, Sum P(4) = 5.2e-122
Identities = 75/236 (31%), Positives = 123/236 (52%)
Query: 461 VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
++++ YP + LP+DLKG+ F + T + LE L+++K GP W+ + +S A
Sbjct: 433 LMEVLYPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKA-- 490
Query: 521 RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
+ S CKYE VD K + A P + + A+N+ T N R+D NEI S++
Sbjct: 491 KTSNCKYEFEVDMEKMRNIKYLESSDAPPPTIKLLALNVVTTLNDRKD-NEICMISMLFN 549
Query: 581 HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA-TDRNSKAGSNVLCCESS 639
K + P S+ KP L V K GG P K T++ SK +V ++
Sbjct: 550 PKCDLAHPSGDSKDLKPKCL-----VTKPPGGSLPYDIQKRLETEKLSKFVKSV----AN 600
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
E+ALL + + + + D++VGH++S + +L+ R + ++P+ WS+I RLKRS
Sbjct: 601 EKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPN--WSRISRLKRS 653
Score = 239 (89.2 bits), Expect = 8.4e-61, Sum P(4) = 8.4e-61
Identities = 86/303 (28%), Positives = 136/303 (44%)
Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
+ CE GT + ++ QRA H E+ + ID+ YY +QQIHPVVSRL IE T
Sbjct: 1143 VICEDGTDNPAT----QRAYHRTEMAENSAL-KIDLLYYLAQQIHPVVSRLVEPIEETDA 1197
Query: 1278 ERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCP--SCSSTFD 1335
R+A+ LGLD + ++ +E Y CE + + CP C +
Sbjct: 1198 VRIAENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHS-- 1253
Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
V V++ S P ++ C +C + +I NQV RQ FV
Sbjct: 1254 --NVIRETFDCVTDA-SSPRLLFS-----GCAQCQGSWDLQE-HQAVIGNQVDRQMSEFV 1304
Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQL 1454
+ ++ CD+ TC++ T ++ + G C RC+ G L R+YT L+ Q
Sbjct: 1305 ARHHLAAFKCDEPTCEFKT---RVQTMKWCREGLECI---RCSTGVLRREYTSKQLFDQQ 1358
Query: 1455 TYFCHLLDTQRGIEKM----EISAKIPLEKELNKIRPVVALAASTVQRIRERCAYGWVKL 1510
+F +LD + K+ + +AK+ +E KI ++ LA ++ E+ AY V L
Sbjct: 1359 MFFRTILDVDAAVRKLSDAQKKAAKVRVEYNGCKIDSMM-LADRINEKYLEKNAYNRVDL 1417
Query: 1511 NDI 1513
+ I
Sbjct: 1418 SYI 1420
Score = 141 (54.7 bits), Expect = 1.1e-127, Sum P(4) = 1.1e-127
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 45 YNIKLE-NPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQ--EEDWSVAGLPS 101
Y +L+ +YDTV +DEY+ +VA+R+++ FIVDDDG+GY D G E+D+ PS
Sbjct: 45 YRPELDVEDVYDTVDDDEYEKIVAKRQKD--NFIVDDDGMGYVDNGVDFEDDYEDDYAPS 102
Query: 102 SS--DDESLDGQRSIKKQRIEKRG 123
SS + S G++ KK + K+G
Sbjct: 103 SSKNSNSSKKGEKKPKKDK--KKG 124
Score = 121 (47.7 bits), Expect = 1.1e-127, Sum P(4) = 1.1e-127
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 334 SLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
++ Y +DA+E + AN GT+YLFGKVK +G+ +C +VVKN+ R VY +P T
Sbjct: 325 AIRMYWIDAYEDVHKAN-GTVYLFGKVKTSGNAWETCSIVVKNICRKVYFMPRTKNLSTG 383
Query: 393 E---IMKLEK---DAEESRISPMAFRKKLQDVAL 420
E + +L K D ++ + F+ K+ + L
Sbjct: 384 EESSLAELHKEIGDVLRNKFNTHEFKCKMVEKEL 417
Score = 44 (20.5 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 520 QRVSWCK--YEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASV 577
Q + WC+ E S +R +SK + + T +++ K D + +
Sbjct: 1326 QTMKWCREGLECIRCSTGVLRREYTSKQLFDQQMFFRTILDVDAAVRKLSDAQKKAAKVR 1385
Query: 578 VCCHKAKIDTPMLA 591
V + KID+ MLA
Sbjct: 1386 VEYNGCKIDSMMLA 1399
Score = 43 (20.2 bits), Expect = 1.7e-119, Sum P(4) = 1.7e-119
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 463 KIN-YPFKDPPLPADL-KGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
K N + FK + +L + E+F GT S +E+ K K PS L FS+
Sbjct: 402 KFNTHEFKCKMVEKELIRDESFGYGCGTKSPLMEVLYPAEKGKLPSDLKGDTFSN 456
Score = 38 (18.4 bits), Expect = 5.2e-89, Sum P(3) = 5.2e-89
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 752 KDRKEVGPHDVLKMFQTLESLMELIEYGETD 782
KD+K+ G H L T + + E + E D
Sbjct: 119 KDKKKGGLHAFLSTTSTKKPIDESVVKAEFD 149
Score = 37 (18.1 bits), Expect = 9.1e-117, Sum P(4) = 9.1e-117
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 323 QESEFEVDDDG 333
Q+ F VDDDG
Sbjct: 71 QKDNFIVDDDG 81
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 837 (299.7 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 208/490 (42%), Positives = 270/490 (55%)
Query: 867 TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
++E ++ D +K + Y+GGLVLEPKKGLY+ ILLLDFNSLYPSIIQEYNI
Sbjct: 794 SSESKKKKEESQEGDEKKSGKAQ-YSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852
Query: 927 CFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLD 981
C+TT+E S D VP S+ GVLP ++ LV+ RR VK+ MK+ K +Q+D
Sbjct: 853 CYTTLEYSKDSDEQLSVPQ--STDIEGVLPREIRKLVECRRDVKSLMKSERNEAKKKQMD 910
Query: 982 IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
I+Q ALKLTANSMYGCLGF SRFYAKPLA L+T +GREIL + DLV+ + V+YGD
Sbjct: 911 IRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEK-MGYSVVYGD 969
Query: 1042 TDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQF 1101
TDSIMI++ + + VNK ++ LE+DLDG
Sbjct: 970 TDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALT--I 1027
Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED-VVESIHNSLMKVQED 1160
E E KGLD+VRRDWS L+KE G + +IL D +V SI + L +++
Sbjct: 1028 NPDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAK 1087
Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
+ SG V LE + I+K LT+ PE Y D K Q H VA RL +SG D V Y+IC
Sbjct: 1088 LDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG-KFNLRHNDIVEYVIC- 1145
Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
E GT + ++ QRA H E+ + ID+ YY +QQIHPVVSRL IE T R+
Sbjct: 1146 EDGTDNPAT----QRAYHRTEMAENSAL-KIDLLYYLAQQIHPVVSRLVEPIEETDAVRI 1200
Query: 1281 ADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCP--SCS------S 1332
A+ LGLD + ++ +E Y CE + + CP C
Sbjct: 1201 AENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHSNVIRE 1258
Query: 1333 TFDCPAVCSS 1342
TFDC SS
Sbjct: 1259 TFDCVTDASS 1268
Score = 327 (120.2 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 83/259 (32%), Positives = 146/259 (56%)
Query: 605 VVRKLDGGIFPMGFNKEA-TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHN 663
+V K GG P K T++ SK +V ++E+ALL + + + + D++VGH+
Sbjct: 569 LVTKPPGGSLPYDIQKRLETEKLSKFVKSV----ANEKALLTLFLAMINEDEPDMIVGHD 624
Query: 664 ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
+S + +L+ R + ++P+ WS+I RLKRS + G+ G S G AGR+
Sbjct: 625 LSA-TIALLVSRLEKLKLPN--WSRISRLKRS----INIGK--IGHSKS-GQWELTAGRM 674
Query: 724 LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDA 783
+ D+ L + +L++ S+ LT+L++ L +R+E+ +++ +++ + L+ LI + D
Sbjct: 675 MLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANEIPQLYVDSKDLISLINWSWNDL 734
Query: 784 WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
LS+ ++ L+ LPL Q++ I G + +T+ G RA+R EYLLLHAF I PDK+
Sbjct: 735 LLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNS 794
Query: 844 VKETKMAKQRSNHGVEDRN 862
E+K K+ S G E ++
Sbjct: 795 -SESKKKKEESQEGDEKKS 812
Score = 273 (101.2 bits), Expect = 7.4e-122, Sum P(4) = 7.4e-122
Identities = 75/236 (31%), Positives = 123/236 (52%)
Query: 461 VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
++++ YP + LP+DLKG+ F + T + LE L+++K GP W+ + +S A
Sbjct: 433 LMEVLYPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKA-- 490
Query: 521 RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
+ S CKYE VD K + A P + + A+N+ T N R+D NEI S++
Sbjct: 491 KTSNCKYEFEVDMEKMRNIKYLESSDAPPPTIKLLALNVVTTLNDRKD-NEICMISMLFN 549
Query: 581 HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA-TDRNSKAGSNVLCCESS 639
K + P S+ KP L V K GG P K T++ SK +V ++
Sbjct: 550 PKCDLAHPSGDSKDLKPKCL-----VTKPPGGSLPYDIQKRLETEKLSKFVKSV----AN 600
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
E+ALL + + + + D++VGH++S + +L+ R + ++P+ WS+I RLKRS
Sbjct: 601 EKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPN--WSRISRLKRS 653
Score = 228 (85.3 bits), Expect = 1.3e-59, Sum P(4) = 1.3e-59
Identities = 74/261 (28%), Positives = 115/261 (44%)
Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
+ CE GT + ++ QRA H E+ + ID+ YY +QQIHPVVSRL IE T
Sbjct: 1143 VICEDGTDNPAT----QRAYHRTEMAENSAL-KIDLLYYLAQQIHPVVSRLVEPIEETDA 1197
Query: 1278 ERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCP--SCSSTFD 1335
R+A+ LGLD + ++ +E Y CE + + CP C +
Sbjct: 1198 VRIAENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHS-- 1253
Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
V V++ S P ++ C +C + +I NQV RQ FV
Sbjct: 1254 --NVIRETFDCVTDA-SSPRLLFS-----GCAQCQGSWDLQE-HQAVIGNQVDRQMSEFV 1304
Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQL 1454
+ ++ CD+ TC++ T ++ + G C RC+ G L R+YT L+ Q
Sbjct: 1305 ARHHLAAFKCDEPTCEFKT---RVQTMKWCREGLECI---RCSTGVLRREYTSKQLFDQQ 1358
Query: 1455 TYFCHLLDTQRGIEKMEISAK 1475
+F +LD + K+ + K
Sbjct: 1359 MFFRTILDVDAAVRKLSDAQK 1379
Score = 141 (54.7 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 45 YNIKLE-NPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQ--EEDWSVAGLPS 101
Y +L+ +YDTV +DEY+ +VA+R+++ FIVDDDG+GY D G E+D+ PS
Sbjct: 45 YRPELDVEDVYDTVDDDEYEKIVAKRQKD--NFIVDDDGMGYVDNGVDFEDDYEDDYAPS 102
Query: 102 SS--DDESLDGQRSIKKQRIEKRG 123
SS + S G++ KK + K+G
Sbjct: 103 SSKNSNSSKKGEKKPKKDK--KKG 124
Score = 121 (47.7 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 334 SLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
++ Y +DA+E + AN GT+YLFGKVK +G+ +C +VVKN+ R VY +P T
Sbjct: 325 AIRMYWIDAYEDVHKAN-GTVYLFGKVKTSGNAWETCSIVVKNICRKVYFMPRTKNLSTG 383
Query: 393 E---IMKLEK---DAEESRISPMAFRKKLQDVAL 420
E + +L K D ++ + F+ K+ + L
Sbjct: 384 EESSLAELHKEIGDVLRNKFNTHEFKCKMVEKEL 417
Score = 43 (20.2 bits), Expect = 2.5e-119, Sum P(4) = 2.5e-119
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 463 KIN-YPFKDPPLPADL-KGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
K N + FK + +L + E+F GT S +E+ K K PS L FS+
Sbjct: 402 KFNTHEFKCKMVEKELIRDESFGYGCGTKSPLMEVLYPAEKGKLPSDLKGDTFSN 456
Score = 38 (18.4 bits), Expect = 6.8e-89, Sum P(3) = 6.8e-89
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 752 KDRKEVGPHDVLKMFQTLESLMELIEYGETD 782
KD+K+ G H L T + + E + E D
Sbjct: 119 KDKKKGGLHAFLSTTSTKKPIDESVVKAEFD 149
Score = 38 (18.4 bits), Expect = 4.1e-34, Sum P(4) = 4.1e-34
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 802 LTNISGNLWGKTLQGARAQR 821
L N G W K+L+ + +R
Sbjct: 1383 LRNFIGKKWEKSLENGKFRR 1402
Score = 37 (18.1 bits), Expect = 1.3e-116, Sum P(4) = 1.3e-116
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 323 QESEFEVDDDG 333
Q+ F VDDDG
Sbjct: 71 QKDNFIVDDDG 81
Score = 37 (18.1 bits), Expect = 8.2e-40, Sum P(4) = 8.2e-40
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 951 LPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGC 997
L + K+ R + K W K+ K ++ + QA K+ GC
Sbjct: 1374 LSDAQKSSCLRNFIGKKWEKSLENGKFRRNSAKNQAAKVRVE-YNGC 1419
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 837 (299.7 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 208/490 (42%), Positives = 270/490 (55%)
Query: 867 TNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNI 926
++E ++ D +K + Y+GGLVLEPKKGLY+ ILLLDFNSLYPSIIQEYNI
Sbjct: 794 SSESKKKKEESQEGDEKKSGKAQ-YSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNI 852
Query: 927 CFTTVERSPDG----LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLD 981
C+TT+E S D VP S+ GVLP ++ LV+ RR VK+ MK+ K +Q+D
Sbjct: 853 CYTTLEYSKDSDEQLSVPQ--STDIEGVLPREIRKLVECRRDVKSLMKSERNEAKKKQMD 910
Query: 982 IQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGD 1041
I+Q ALKLTANSMYGCLGF SRFYAKPLA L+T +GREIL + DLV+ + V+YGD
Sbjct: 911 IRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEK-MGYSVVYGD 969
Query: 1042 TDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQF 1101
TDSIMI++ + + VNK ++ LE+DLDG
Sbjct: 970 TDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALT--I 1027
Query: 1102 KDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCED-VVESIHNSLMKVQED 1160
E E KGLD+VRRDWS L+KE G + +IL D +V SI + L +++
Sbjct: 1028 NPDTKVEAKELKGLDIVRRDWSQLAKETGTAVVDKILDASLTRDEMVSSIDDLLREIRAK 1087
Query: 1161 MRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICC 1220
+ SG V LE + I+K LT+ PE Y D K Q H VA RL +SG D V Y+IC
Sbjct: 1088 LDSGTVPLEMFQISKQLTRNPEQYADVKAQCHAAVAQRLNKSG-KFNLRHNDIVEYVIC- 1145
Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
E GT + ++ QRA H E+ + ID+ YY +QQIHPVVSRL IE T R+
Sbjct: 1146 EDGTDNPAT----QRAYHRTEMAENSAL-KIDLLYYLAQQIHPVVSRLVEPIEETDAVRI 1200
Query: 1281 ADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCP--SCS------S 1332
A+ LGLD + ++ +E Y CE + + CP C
Sbjct: 1201 AENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHSNVIRE 1258
Query: 1333 TFDCPAVCSS 1342
TFDC SS
Sbjct: 1259 TFDCVTDASS 1268
Score = 327 (120.2 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 83/259 (32%), Positives = 146/259 (56%)
Query: 605 VVRKLDGGIFPMGFNKEA-TDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHN 663
+V K GG P K T++ SK +V ++E+ALL + + + + D++VGH+
Sbjct: 569 LVTKPPGGSLPYDIQKRLETEKLSKFVKSV----ANEKALLTLFLAMINEDEPDMIVGHD 624
Query: 664 ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRL 723
+S + +L+ R + ++P+ WS+I RLKRS + G+ G S G AGR+
Sbjct: 625 LSA-TIALLVSRLEKLKLPN--WSRISRLKRS----INIGK--IGHSKS-GQWELTAGRM 674
Query: 724 LCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDA 783
+ D+ L + +L++ S+ LT+L++ L +R+E+ +++ +++ + L+ LI + D
Sbjct: 675 MLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANEIPQLYVDSKDLISLINWSWNDL 734
Query: 784 WLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTY 843
LS+ ++ L+ LPL Q++ I G + +T+ G RA+R EYLLLHAF I PDK+
Sbjct: 735 LLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNS 794
Query: 844 VKETKMAKQRSNHGVEDRN 862
E+K K+ S G E ++
Sbjct: 795 -SESKKKKEESQEGDEKKS 812
Score = 273 (101.2 bits), Expect = 7.4e-122, Sum P(4) = 7.4e-122
Identities = 75/236 (31%), Positives = 123/236 (52%)
Query: 461 VLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQ 520
++++ YP + LP+DLKG+ F + T + LE L+++K GP W+ + +S A
Sbjct: 433 LMEVLYPAEKGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKA-- 490
Query: 521 RVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC 580
+ S CKYE VD K + A P + + A+N+ T N R+D NEI S++
Sbjct: 491 KTSNCKYEFEVDMEKMRNIKYLESSDAPPPTIKLLALNVVTTLNDRKD-NEICMISMLFN 549
Query: 581 HKAKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEA-TDRNSKAGSNVLCCESS 639
K + P S+ KP L V K GG P K T++ SK +V ++
Sbjct: 550 PKCDLAHPSGDSKDLKPKCL-----VTKPPGGSLPYDIQKRLETEKLSKFVKSV----AN 600
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
E+ALL + + + + D++VGH++S + +L+ R + ++P+ WS+I RLKRS
Sbjct: 601 EKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPN--WSRISRLKRS 653
Score = 228 (85.3 bits), Expect = 1.3e-59, Sum P(4) = 1.3e-59
Identities = 74/261 (28%), Positives = 115/261 (44%)
Query: 1218 ICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSP 1277
+ CE GT + ++ QRA H E+ + ID+ YY +QQIHPVVSRL IE T
Sbjct: 1143 VICEDGTDNPAT----QRAYHRTEMAENSAL-KIDLLYYLAQQIHPVVSRLVEPIEETDA 1197
Query: 1278 ERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCP--SCSSTFD 1335
R+A+ LGLD + ++ +E Y CE + + CP C +
Sbjct: 1198 VRIAENLGLDSTNYRRAAAAQASQRAAEE--DCAWHQENYDLCEGIHVICPLDGCGHS-- 1253
Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
V V++ S P ++ C +C + +I NQV RQ FV
Sbjct: 1254 --NVIRETFDCVTDA-SSPRLLFS-----GCAQCQGSWDLQE-HQAVIGNQVDRQMSEFV 1304
Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCN-GRLVRKYTEADLYKQL 1454
+ ++ CD+ TC++ T ++ + G C RC+ G L R+YT L+ Q
Sbjct: 1305 ARHHLAAFKCDEPTCEFKT---RVQTMKWCREGLECI---RCSTGVLRREYTSKQLFDQQ 1358
Query: 1455 TYFCHLLDTQRGIEKMEISAK 1475
+F +LD + K+ + K
Sbjct: 1359 MFFRTILDVDAAVRKLSDAQK 1379
Score = 141 (54.7 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 45 YNIKLE-NPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQ--EEDWSVAGLPS 101
Y +L+ +YDTV +DEY+ +VA+R+++ FIVDDDG+GY D G E+D+ PS
Sbjct: 45 YRPELDVEDVYDTVDDDEYEKIVAKRQKD--NFIVDDDGMGYVDNGVDFEDDYEDDYAPS 102
Query: 102 SS--DDESLDGQRSIKKQRIEKRG 123
SS + S G++ KK + K+G
Sbjct: 103 SSKNSNSSKKGEKKPKKDK--KKG 124
Score = 121 (47.7 bits), Expect = 1.6e-127, Sum P(4) = 1.6e-127
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 334 SLPFYILDAHEQLSGANMGTLYLFGKVK-AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTD 392
++ Y +DA+E + AN GT+YLFGKVK +G+ +C +VVKN+ R VY +P T
Sbjct: 325 AIRMYWIDAYEDVHKAN-GTVYLFGKVKTSGNAWETCSIVVKNICRKVYFMPRTKNLSTG 383
Query: 393 E---IMKLEK---DAEESRISPMAFRKKLQDVAL 420
E + +L K D ++ + F+ K+ + L
Sbjct: 384 EESSLAELHKEIGDVLRNKFNTHEFKCKMVEKEL 417
Score = 43 (20.2 bits), Expect = 2.5e-119, Sum P(4) = 2.5e-119
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 463 KIN-YPFKDPPLPADL-KGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
K N + FK + +L + E+F GT S +E+ K K PS L FS+
Sbjct: 402 KFNTHEFKCKMVEKELIRDESFGYGCGTKSPLMEVLYPAEKGKLPSDLKGDTFSN 456
Score = 38 (18.4 bits), Expect = 6.8e-89, Sum P(3) = 6.8e-89
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 752 KDRKEVGPHDVLKMFQTLESLMELIEYGETD 782
KD+K+ G H L T + + E + E D
Sbjct: 119 KDKKKGGLHAFLSTTSTKKPIDESVVKAEFD 149
Score = 38 (18.4 bits), Expect = 4.1e-34, Sum P(4) = 4.1e-34
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 802 LTNISGNLWGKTLQGARAQR 821
L N G W K+L+ + +R
Sbjct: 1383 LRNFIGKKWEKSLENGKFRR 1402
Score = 37 (18.1 bits), Expect = 1.3e-116, Sum P(4) = 1.3e-116
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 323 QESEFEVDDDG 333
Q+ F VDDDG
Sbjct: 71 QKDNFIVDDDG 81
Score = 37 (18.1 bits), Expect = 8.2e-40, Sum P(4) = 8.2e-40
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 951 LPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGC 997
L + K+ R + K W K+ K ++ + QA K+ GC
Sbjct: 1374 LSDAQKSSCLRNFIGKKWEKSLENGKFRRNSAKNQAAKVRVE-YNGC 1419
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 1070 (381.7 bits), Expect = 8.2e-122, Sum P(3) = 8.2e-122
Identities = 266/715 (37%), Positives = 390/715 (54%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
+SE+ LLN + + D DVL+GH + LDVL HRA R+P+ +S GR R
Sbjct: 583 NSEKVLLNCFCAMMKRSDPDVLIGHRLENISLDVLCHRALQLRIPT--FSSFGRRLRRSW 640
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCD-TFLCSRDLLREV-SYSLTQLAKTQLNKDRK 755
P+ R G+ S A I +GRLLCD + + L + S+ L ++ + ++ K
Sbjct: 641 PE-RFGKNN-ASMAQFYIRDIFSGRLLCDISNEMGQSLTPKCQSWELGEMYQVVCQREYK 698
Query: 756 --EVGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKT 813
E+ +D + + L+ + T++ S E+ F + +L LT+QLTN++GN WG T
Sbjct: 699 PLEINFNDS-RYHEDANFLVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHT 757
Query: 814 LQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANF 873
L G RA R E++LLH F YI+PDK + ++ + A+Q+ N D +V
Sbjct: 758 LGGTRAGRNEFILLHEFYRNNYILPDKES--RQMRSARQQQNVDTPDGDVA--------- 806
Query: 874 DNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER 933
D S N ++K K Y GGLV +P KGL+ YIL++DFNSLYPSIIQE+NICFTTVER
Sbjct: 807 -TD-SRNSNKKAK----YQGGLVFDPDKGLHKNYILVMDFNSLYPSIIQEFNICFTTVER 860
Query: 934 SPDGL--VPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLT 990
+P + +P +P+ GVLP LL NLV+RRR VK M + K + DI+QQALKLT
Sbjct: 861 NPHDIDELPQVPTEAKPGVLPRLLANLVERRREVKKLMNAETDAHKKAECDIRQQALKLT 920
Query: 991 ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSX 1050
ANSMYGCLG+ NSRFYAKPLA L+T +GREIL +T L ++ L L V+YGDTDS+MI +
Sbjct: 921 ANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAES-LGLAVVYGDTDSVMIDTG 979
Query: 1051 XXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQF-KDGMPYEV 1109
+ VN++Y+ LEID+D F K G
Sbjct: 980 CDNYREALSIGENFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALNVSFDKAGNEITS 1039
Query: 1110 IERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALE 1169
+E KGLDM RR++ LSKEV L+ ILS++ E +E++++ + ++ + + ++ +
Sbjct: 1040 LEVKGLDMRRREYCPLSKEVSTQVLNTILSDQDSESALENVYDYMETIKSKIENNEIRAD 1099
Query: 1170 KYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSS 1229
K+ I L+K P++YP+ K P VQVAL+++ G +AG + +++ +GT
Sbjct: 1100 KFKINTRLSKDPKSYPNGKTMPAVQVALKMRAVGRVV--NAGTVITFVVT--KGTDESEQ 1155
Query: 1230 VGIAQRARHPDE-LKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDP 1288
A RAR E + K +G + D YY +QI V RL IE RL + LG+D
Sbjct: 1156 SNPADRARPLHEVMNKANGL-VPDPMYYLEKQIFAPVERLLQKIESFDVVRLGNALGIDG 1214
Query: 1289 SKF-QXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVCSS 1342
+F L + D ER++ + ++CPSC + F + +S
Sbjct: 1215 RRFINNVQDSTSNRSELQPLESTISDMERFKDATAMRVTCPSCQAKFPFGGIVAS 1269
Score = 515 (186.3 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 148/455 (32%), Positives = 234/455 (51%)
Query: 419 ALGLKTEIANQLLN-LNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPP----- 472
AL + EI L++ +S P K+ YAF A+IP Y LK+ P++ P
Sbjct: 371 ALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFELADIPKEAEY-LKVLLPYETPKCKNVV 429
Query: 473 LPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVD 532
+P+DL G+ FC + G +SS E F+++R++ GP WLSI K + S C E+ +
Sbjct: 430 IPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCWLSI-KQGDFNEIKNSSHCDSEVFIS 488
Query: 533 SPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLAS 592
P++I S + P + +++++TV N + + EIVS S+ + DTP+
Sbjct: 489 IPQNI---SPHQERLPAPELKCVSLSVQTVMNVKDNKQEIVSISMCYYNDLPQDTPI--E 543
Query: 593 EWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELY 652
E KP + T+VR + G FP G N R G+ + +SE+ LLN +
Sbjct: 544 ENLKPSDI--ITLVRPVKGSSFPPGLN--VLSRKELQGT--VRTFNSEKVLLNCFCAMMK 597
Query: 653 KLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGAS 712
+ D DVL+GH + LDVL HRA R+P+ +S GR R P+ R G+ S A
Sbjct: 598 RSDPDVLIGHRLENISLDVLCHRALQLRIPT--FSSFGRRLRRSWPE-RFGKNN-ASMAQ 653
Query: 713 PGIMSCIAGRLLCD-TFLCSRDLLREV-SYSLTQLAKTQLNKDRK--EVGPHDVLKMFQT 768
I +GRLLCD + + L + S+ L ++ + ++ K E+ +D + +
Sbjct: 654 FYIRDIFSGRLLCDISNEMGQSLTPKCQSWELGEMYQVVCQREYKPLEINFNDS-RYHED 712
Query: 769 LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLH 828
L+ + T++ S E+ F + +L LT+QLTN++GN WG TL G RA R E++LLH
Sbjct: 713 ANFLVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLGGTRAGRNEFILLH 772
Query: 829 AFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNV 863
F YI+PDK + ++ + A+Q+ N D +V
Sbjct: 773 EFYRNNYILPDKES--RQMRSARQQQNVDTPDGDV 805
Score = 139 (54.0 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 73/287 (25%), Positives = 111/287 (38%)
Query: 1222 QGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLA 1281
+GT A RAR E+ + D YY +QI V RL IE RL
Sbjct: 1148 KGTDESEQSNPADRARPLHEVMNKANGLVPDPMYYLEKQIFAPVERLLQKIESFDVVRLG 1207
Query: 1282 DCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRG-CEPLILSCPSCSSTFDCPAVC 1340
+ LG+D +F + V D R +PL + D A+
Sbjct: 1208 NALGIDGRRF----------------INNVQDSTSNRSELQPLESTISDMERFKDATAMR 1251
Query: 1341 SSICMSVSEK-PSK---PETEYNF-WRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
+ C S K P Y F + L+C C + A P + +Q++ +
Sbjct: 1252 VT-CPSCQAKFPFGGIVASNHYQFTYSGLQCKAC-NHIFA----PLQLTSQLEFAIRAHI 1305
Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLT 1455
S++Y M+CDD TC T L++ G C N C G + +Y++ LY QL
Sbjct: 1306 SLFYAAWMVCDDPTCGTVTRQLSVF-------GKRCLN-EACTGVMHYRYSDKQLYNQLL 1357
Query: 1456 YFCHLLDTQRGIEKMEISAKIPLEKELNKIRPVVALAASTVQRIRER 1502
YF L D + + +P + ++ P L+AS V + E+
Sbjct: 1358 YFDSLFDVTKTKNRDLKPLYLPGDADM----PTEPLSASQVAALAEQ 1400
Score = 111 (44.1 bits), Expect = 8.2e-122, Sum P(3) = 8.2e-122
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 50 ENPIYDTVAEDEYDALVARRREEARG-FIVDDDGLGYGDEGQEEDWS-VAGLPSSSDDES 107
EN +YD V E+++ RRRE R F+VDDDG GY + G +E W+ G SS +++
Sbjct: 35 ENRVYDLVGEEQFQE--QRRRELLRDDFVVDDDGQGYVNNGLDE-WADTRGDVSSDENDP 91
Query: 108 LDGQRSIKK 116
Q S KK
Sbjct: 92 QQRQASNKK 100
Score = 52 (23.4 bits), Expect = 8.2e-122, Sum P(3) = 8.2e-122
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 353 TLYLFGKVKA-GSTHHSCCVVVKNMQRCVYAIP 384
+L LFGK+K H S V V + R +Y +P
Sbjct: 333 SLLLFGKIKTLNGKHISAMVQVAGIYRELYFLP 365
Score = 41 (19.5 bits), Expect = 1.9e-114, Sum P(3) = 1.9e-114
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 65 LVARRREEARGFIVDDDGLGYGDEGQEED 93
L A R ++ ++D++ LGY DE + D
Sbjct: 13 LSAARTSKSSREVLDEE-LGYNDENRVYD 40
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 915 (327.2 bits), Expect = 8.1e-111, Sum P(4) = 8.1e-111
Identities = 247/689 (35%), Positives = 361/689 (52%)
Query: 662 HNISGFDLDVLL-HRAQVCRVPSSMWSKIGRLKR---SEMPKLRKGR--TIFGSGASPGI 715
+ + +D DV H ++C S + S++ K S + +LR+ F + +
Sbjct: 611 NKVRTYDPDVYFGHDFEMCY--SVLLSRLKERKIHNWSSIGRLRRSEWPRSFNRSSQQFV 668
Query: 716 -MSCIAGRLLCDTFLCSRDLLREVSYSLT-QLAKTQLNKDRKEVGPHDVLKMFQTLESLM 773
IAGRL+CD S D R + + + L++ L + ++ D+ + L+S
Sbjct: 669 EKQIIAGRLMCDL---SNDFGRSMIKAQSWSLSEIVLKE--LDIKRQDI-NQEKALQSWT 722
Query: 774 ELIEYGETDAWLSMEL-MFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRA 832
+ +G D + E+ F ++ + Q+ +S NL + G R L RA
Sbjct: 723 DTA-HGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNL--TNIAGNSWART----LTGTRA 775
Query: 833 KKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYA 892
++ +++ + E K ++ + V D+ + +A F + + GK+ Y
Sbjct: 776 ER----NEYILLHEFK----KNGYIVPDKQQSIRRHAEA-FGAEDGLQEESLGKKKDKYK 826
Query: 893 GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP-----DGLVPHLPS-SK 946
GGLV EP+KGLY+ IL++DFNSLYPSIIQEYNICFTTV+RSP D +P PS S
Sbjct: 827 GGLVFEPQKGLYETCILVMDFNSLYPSIIQEYNICFTTVDRSPSNSDSDDQIPDTPSASA 886
Query: 947 TTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQL--DIQQQALKLTANSMYGCLGFSNSR 1004
G+ P L+ NLV+RRR +K +K S Q+L DIQQQALKLTANSMYGCLG++ SR
Sbjct: 887 NQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTKSR 946
Query: 1005 FYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXV 1064
FYA+PLA LIT +GRE L +T +L + + L+VIYGDTDS+M+++
Sbjct: 947 FYARPLAVLITYKGREALMNTKELA-DQMGLQVIYGDTDSVMLNTNVTDKNHALRIGNEF 1005
Query: 1065 IQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSL 1124
++VN++Y LEID+D G P ++ KGLDM RR++
Sbjct: 1006 KEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLD-SQGKPN--LDVKGLDMKRREFCT 1062
Query: 1125 LSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAY 1184
L+KE FCL QILS E V+E+IH+ LM E MR+G+ K++I L K PE Y
Sbjct: 1063 LAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDY 1122
Query: 1185 PDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKK 1244
P+ K P VQVAL+ K G + GD +P+II G+ + A RA P E+
Sbjct: 1123 PNGKTMPFVQVALKKKARGENV--RVGDVIPFIIA---GSDADGHP--ADRAYSPQEIMN 1175
Query: 1245 GDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXX 1304
+ +ID +YY S QI P + R+ A IEGT+ RLA+CLGLD K+
Sbjct: 1176 TNSTLVIDYNYYLSHQILPPIERVIAPIEGTNRARLAECLGLDARKYYSHETSESSAFQR 1235
Query: 1305 XXLLFAVGDEERYRGCEPLILSCPSCSST 1333
D++ + PL+L CPSC++T
Sbjct: 1236 YESTLT--DDQCFINVSPLLLKCPSCNAT 1262
Score = 511 (184.9 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
Identities = 131/420 (31%), Positives = 212/420 (50%)
Query: 425 EIANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCS 484
E+AN L V + K +YAF ++P +Y L++ Y + P LP DL G +F
Sbjct: 398 EVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADY-LEVIYSYSYPALPTDLTGSSFSH 456
Query: 485 LLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSK 544
+ GT+++ E F++ R+V GP WL I + + A + SWC+ EI SP++I VS
Sbjct: 457 VFGTNTALFEQFVLSRRVMGPCWLKIQQ-PNFDAVKNASWCRVEIGCSSPQNISVSFEKN 515
Query: 545 HV-AEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASEWKKPGMLSHF 603
+ ++ PP+TV ++ +T+ NK Q+ E+V S I+ + A++ P F
Sbjct: 516 EITSKTPPMTVMSLAFRTLINKEQNKQEVVMISARIFENVDIEKGLPANDM--PSY--SF 571
Query: 604 TVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHN 663
+++R L IFP GF K A S + CE SE +LLN + ++ D DV GH+
Sbjct: 572 SLIRPLKQ-IFPNGFEKLARQHKSS-----IFCERSEVSLLNNFLNKVRTYDPDVYFGHD 625
Query: 664 ISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKL--RKGRTIFGSGASPGIMSCIAG 721
VLL R + ++ + WS IGRL+RSE P+ R + G + C
Sbjct: 626 FE-MCYSVLLSRLKERKIHN--WSSIGRLRRSEWPRSFNRSSQQFVEKQIIAGRLMCDLS 682
Query: 722 RLLCDTFLCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGE 780
+ + ++ L E+ + + +N+++ + T L++ + + E
Sbjct: 683 NDFGRSMIKAQSWSLSEIVLKELDIKRQDINQEKA------LQSWTDTAHGLLDYLVHCE 736
Query: 781 TDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDK 840
D + + F + +L L++ LTNI+GN W +TL G RA+R EY+LLH F+ YIVPDK
Sbjct: 737 IDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYILLHEFKKNGYIVPDK 796
Score = 132 (51.5 bits), Expect = 8.1e-111, Sum P(4) = 8.1e-111
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y K +YD V+E+EY +V +R +E F+VDD+G GY D G +E W + S D
Sbjct: 31 YESKENEELYDNVSEEEYRKIVRQRLDED-DFVVDDNGAGYVDNGYDE-WDQSHY-SDED 87
Query: 105 DESLDGQRSIKKQRIEKRGKKENNQNV 131
DE+ G S +K++ K E NQ +
Sbjct: 88 DENEKGS-SGRKRKKSKNVLAEPNQQI 113
Score = 121 (47.7 bits), Expect = 8.1e-111, Sum P(4) = 8.1e-111
Identities = 39/150 (26%), Positives = 66/150 (44%)
Query: 1336 CPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFV 1395
CP+ C++ S+ S ET Y T+ C C E S I Q Q F+
Sbjct: 1256 CPS-CNATSFSLRSVKSLKETLYA--NTVECD-CGYEY-----SDFTIILQFSSQLRDFI 1306
Query: 1396 SMYYKGLMMCDDETCKYTTCSLNLRLIGDAERGTVCPNYPRCNGRLVRKYTEADLYKQLT 1455
++YY+G+++CDD +C T +++ G C N C G + +Y + LY Q+
Sbjct: 1307 NLYYEGILVCDDSSCGNRTRQMSVY-------GKRCCN-KSCRGSVHFEYNDEQLYNQIK 1358
Query: 1456 YFCHLLDTQRGIEKMEISAKIPLEKELNKI 1485
+ + T G + I + K +++I
Sbjct: 1359 FLLKAVQTTTGATRNGIIRCNAINKNISRI 1388
Score = 79 (32.9 bits), Expect = 8.1e-111, Sum P(4) = 8.1e-111
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIP--N 385
++DGSL F+ +D E G+L LFGKV KA + SC + V + R +Y +P +
Sbjct: 325 EEDGSLFFFWMDYTEMY-----GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLPRPS 379
Query: 386 GPLFQTDEIMKLEKD 400
D I KD
Sbjct: 380 SSSVSEDSIAAQTKD 394
Score = 40 (19.1 bits), Expect = 5.5e-10, Sum P(3) = 5.5e-10
Identities = 23/83 (27%), Positives = 33/83 (39%)
Query: 905 DKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL--VPHLPSS---------KTTGVLPE 953
+ Y L F +Y ++Y CF V+ L +P SS +T V E
Sbjct: 339 EMYGSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYFLPRPSSSSVSEDSIAAQTKDVYDE 398
Query: 954 LLKNLVQRRRMVKTWMKTASGLK 976
+ NL+ +R VK W S K
Sbjct: 399 VA-NLLSKRG-VKEWKSRVSKYK 419
Score = 37 (18.1 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 1342 SICMS-VSEKPSKPETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQ 1390
+IC + V PS +++ P P I P +IAN V+R+
Sbjct: 859 NICFTTVDRSPSNSDSDDQI------PDTPSASANQGIFPRLIANLVERR 902
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 542 (195.9 bits), Expect = 1.4e-89, Sum P(2) = 1.4e-89
Identities = 155/526 (29%), Positives = 261/526 (49%)
Query: 422 LKTEIANQLLNLNVSN----YIVSPVKRRYAFGQAEIPAGEN--YVLKINYPFKDPPLPA 475
+K EIA L S ++ + V + YAF + IP G++ Y + ++Y ++ +
Sbjct: 346 IKNEIAELLKKEQTSRKNVEFLGAFVDKNYAF-ELPIPRGKSRWYQVVMSYEYE--VISP 402
Query: 476 DLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPK 535
D KG+ F +G+ SALE FL+ +K+ GPSW+ + ++ K E VD
Sbjct: 403 DTKGQYFSYCVGSTYSALETFLITKKITGPSWVRFQNVKDTTSC--ITNRKLEFRVDYTN 460
Query: 536 DIRVSSSSKHVAEVPPVTVTAINLKT-----VFNKRQDVNEIVSASVVCCHKAKIDTPML 590
+ K + PP++V I+LKT + K+++ + + + H+ I+
Sbjct: 461 QSNIQVLQKQLP-TPPLSVVCISLKTSQQIVLSQKKKEYKKEIFNLNMKYHEG-INIDN- 517
Query: 591 ASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIE 650
S + + + +D P T + + + C +E LL + ++
Sbjct: 518 -SNKDELNQFKSISFITHID----PTKKQDSITKKGTLPETTKFCL--NELNLLEQFLVH 570
Query: 651 LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
++D D++V H++ +++L R + + ++ SK+ + S++PK +GS
Sbjct: 571 FNEIDPDIVVAHDLYSTVFEIILTRIREKGIRKWNLLSKLINIGSSDIPK-------YGS 623
Query: 710 GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTL 769
M+ + GRLL DT L S++ + V Y+L LA+ + + + F T
Sbjct: 624 STFKTKMA-MKGRLLVDTLLSSQEFVNCVEYTLEALAQKLFKIEIPRIDAKAYQQKFATY 682
Query: 770 ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHA 829
+ L L++ D ++ +M+HL ++PLT+QLT+I GN+W +LQ RA+R E LLLH
Sbjct: 683 KLLNSLVDDTYQDIDYALRIMYHLQIVPLTKQLTSICGNIWMGSLQNQRAERNEMLLLHK 742
Query: 830 FRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP 889
F Y+ PD F + E+ K+ N + + EE D D + + K+
Sbjct: 743 FNQLNYVYPDNFKNLPES-YKKKHKNAQIR-KQYEE--------DEDQAQGNKNPKKKEN 792
Query: 890 AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
Y GG V EP+KGLY++YI+LLDFNSLYPSIIQE+N+CFTT R P
Sbjct: 793 KYKGGQVFEPEKGLYNEYIVLLDFNSLYPSIIQEFNVCFTTCVRDP 838
Score = 449 (163.1 bits), Expect = 1.4e-89, Sum P(2) = 1.4e-89
Identities = 107/290 (36%), Positives = 160/290 (55%)
Query: 938 LVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK-IQQLDIQQQALKLTANSMYG 996
++P + K LP +L+ LV++R++VK +K + I+ LDI+Q+A KL ANSMYG
Sbjct: 888 VLPTIEVIKGIAPLPSILQYLVEQRKVVKNQIKGQKDPQVIETLDIKQKAFKLVANSMYG 947
Query: 997 CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXX 1056
CLGFS+SRFYA PLA IT +GR IL + +V++ + VIYGDTDS+MI
Sbjct: 948 CLGFSSSRFYAMPLASFITAKGRHILFDSKKIVED-MGYSVIYGDTDSLMIKPGTNEFLE 1006
Query: 1057 XXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXX----QFKDGMPYEVIER 1112
+ +VN KYK L++D+DG + K+ E +E+
Sbjct: 1007 AVKTGLSIKIKVNSKYKKLQLDIDGVFKNMLLLKKKKYATLKVANWEEVKNTNAPEKLEK 1066
Query: 1113 --KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
KG+D+VRRDW LS++ G+ L IL +S E++++ I L+++ +D+ +
Sbjct: 1067 EIKGIDVVRRDWCQLSRDAGNKILEIILESKSSENMLDDIKKYLIQLNDDINQKNIKNSN 1126
Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIIC 1219
Y ITK LTK + Y + KN PHV VA R +++ G + YIIC
Sbjct: 1127 YYITKRLTKRVDQYGE-KNLPHVAVAQRSIQEKGIDPQTYVNQIISYIIC 1175
Score = 210 (79.0 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
Identities = 64/239 (26%), Positives = 103/239 (43%)
Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
E KG+D+VRRDW LS++ G+ L IL +S E++++ I L+++ +D+ +
Sbjct: 1067 EIKGIDVVRRDWCQLSRDAGNKILEIILESKSSENMLDDIKKYLIQLNDDINQKNIKNSN 1126
Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALR-LKQSGYSTGCSAGDTVPYIICCEQGTS---- 1225
Y ITK LTK + Y + KN PHV VA R +++ G + YIIC + +
Sbjct: 1127 YYITKRLTKRVDQYGE-KNLPHVAVAQRSIQEKGIDPQTYVNQIISYIICKNEQSKLFFV 1185
Query: 1226 SGSSVGIAQ---------RARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTS 1276
V I + +A P E ID+ YY Q+ + R+ IEG +
Sbjct: 1186 DSCMVNIQREKWWLLLVDKAYSPQEFITQSKSLEIDLQYYKRFQLFEPIKRMLEVIEGIN 1245
Query: 1277 PERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLIL-SCPSCSSTF 1334
+ +A L + + +L ++ P +L C C TF
Sbjct: 1246 LQEIASILEVH---YSVQHVSQNNELNAENVLNLKSKRNQFLTSIPRVLVDCKKCDQTF 1301
Score = 40 (19.1 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 833 KKYIVPDKFTYVKETKMAKQRSNH--GVEDRNVEELTNEDANFDNDT 877
KK I + + ++E + + +N G D+N+ N D + D++T
Sbjct: 171 KKRISQEAKSILREDCASSKTANSSKGKVDQNILNAINRDFSDDSNT 217
Score = 38 (18.4 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 99 LPSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
LP S + + Q I+KQ E + + N+N +K
Sbjct: 757 LPESYKKKHKNAQ--IRKQYEEDEDQAQGNKNPKK 789
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 810 (290.2 bits), Expect = 9.5e-80, P = 9.5e-80
Identities = 197/507 (38%), Positives = 283/507 (55%)
Query: 723 LLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETD 782
++CD + +++L+R SY L++L + L +R + +V M+ L+ L+E+ D
Sbjct: 1 MICDVEISAKELIRCKSYHLSELVQHILKTERVVIPMENVRNMYSESSHLLYLLEHTWKD 60
Query: 783 AWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFT 842
A +++M L+VLPL Q+TNI+GN+ +TL G R++R E+LLLHAF YIVPDK
Sbjct: 61 AKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQI 120
Query: 843 YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHNDHRKG-----KRGPAYAGGLVL 897
+ K + G ED E++ + + + + G K G Y ++L
Sbjct: 121 F------RKPQQKLGDED---EDIDGDASKYKKGRKKAAYSGGLVLDPKVG-FYDKFILL 170
Query: 898 EPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPS-SKTTGVLPELLK 956
LY ++ +FN + ++ + + E +P LP G+LP ++
Sbjct: 171 LDFNSLYPS--IIQEFNICFTTVQRVASEAEKVTEDGEQEQIPELPDPGLEMGILPREIR 228
Query: 957 NLVQRRRMVKTWMKTASGLK---IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAEL 1013
LV+RRR VK MK L + Q DI+Q+ALKLTANSMYGCLGFS SRFYAKPLA L
Sbjct: 229 KLVERRRQVKQLMKQPD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAAL 287
Query: 1014 ITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYK 1073
+T +GREIL T ++VQ +NLEVIYGDTDSIMI++ V EVNK YK
Sbjct: 288 VTYKGREILMHTKEMVQK-MNLEVIYGDTDSIMINTNSNSLEEVFKLGNKVKSEVNKLYK 346
Query: 1074 CLEIDLDGXXXXXXXXXXXXXXXXXXQ-FKDGMPYEVIERKGLDMVRRDWSLLSKEVGDF 1132
LEID+DG + DG E KGLD++RRDW L+K+ G+F
Sbjct: 347 LLEIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYITKQEVKGLDIIRRDWCDLAKDTGNF 406
Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
+ QILS++S + +VE+I L+++ E++ +G V + ++ I K LTK P+ YPD K+ PH
Sbjct: 407 VIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPH 466
Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIIC 1219
V VAL + G AGDTV YIIC
Sbjct: 467 VHVALWINSQG-GRKVKAGDTVSYIIC 492
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 284 (105.0 bits), Expect = 2.3e-53, Sum P(4) = 2.3e-53
Identities = 71/219 (32%), Positives = 114/219 (52%)
Query: 949 GVLPELLKNLVQRRRMVKTWMKTASGL-KIQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1007
G+LP +LK LV++R +K + + K + L +Q ++KL +NS+YGCLG +++RFYA
Sbjct: 213 GILPSILKQLVEKRAFIKKLIASEKNKEKKELLLVQSLSIKLISNSIYGCLGNTHNRFYA 272
Query: 1008 KPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH-----SXXXXXXXXXXXXX 1062
K +A ITQ+GR +L+ T V+ NL+V+YGDTDSIMI S
Sbjct: 273 KYIASYITQKGRNLLQHTKFKVEKEFNLKVVYGDTDSIMIDTGIKSSDVNNYKESLKLAH 332
Query: 1063 XVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDW 1122
+ +NK YK LE+DL+ + YE E KG++ ++RD+
Sbjct: 333 TIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDPNLGKYEY-EMKGINFIKRDF 391
Query: 1123 SLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDM 1161
+SK +G+ L I S + + + N+ + +D+
Sbjct: 392 CKISKLIGNEMLRIIFSNKEYKPSQPNSSNTSLSHTDDL 430
Score = 180 (68.4 bits), Expect = 2.3e-53, Sum P(4) = 2.3e-53
Identities = 35/51 (68%), Positives = 37/51 (72%)
Query: 880 NDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
ND K K Y GGLVLEP G YD Y+L LDFNSLYPSII EYNICF+T
Sbjct: 105 NDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFST 155
Score = 179 (68.1 bits), Expect = 2.3e-53, Sum P(4) = 2.3e-53
Identities = 56/193 (29%), Positives = 90/193 (46%)
Query: 1145 DVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGY 1204
D+ E IH L V + +++ + LE YVITK LTK Y + + HV VA R+ + GY
Sbjct: 435 DLSEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTKNVNEYQEKNSLGHVLVAERMIKDGY 494
Query: 1205 STGCSAGDTVPYIICCEQGT----SSGSS-VGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
+ C + Y +C + + G+ + + E+KK + K ID DYY
Sbjct: 495 NV-C-VNKEIQYCVCRNEDALKFYNKGNEKLNSSLCCFSISEIKKYNLK--IDKDYYIRN 550
Query: 1260 QIHPVVSRLCASIEGTSPERLADCLGLDPSKFQXXXXXXXXXXXXXXLLFAVGD-EERYR 1318
QI ++RLC IEGT+ E+++ C + K +L + + EER++
Sbjct: 551 QILLPINRLCQYIEGTNIEKISSCFNIYNVKEIKSDEQIDESYLETNVLSLLSETEERFK 610
Query: 1319 GCEPL-ILSCPSC 1330
L+C +C
Sbjct: 611 NINLKGFLNCDNC 623
Score = 104 (41.7 bits), Expect = 2.3e-53, Sum P(4) = 2.3e-53
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 793 LSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
L ++ +R LT +SG +W ++L ++ VEY LLH + KKYI P
Sbjct: 49 LQLVEKSRDLTKLSGYIWARSLLSYTSECVEYFLLHEYHKKKYITP 94
Score = 40 (19.1 bits), Expect = 7.3e-33, Sum P(3) = 7.3e-33
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 914 NSLYPSIIQEYNIC--FTTVERSPD 936
NS SI + YN+C VE+S D
Sbjct: 33 NSQIFSIYEIYNVCNVLQLVEKSRD 57
Score = 38 (18.4 bits), Expect = 1.6e-46, Sum P(4) = 1.6e-46
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 581 HKAKIDTPMLASEWKKP 597
HK K TP++A KKP
Sbjct: 87 HKKKYITPLVAK--KKP 101
Score = 37 (18.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 304 KEVSGGNMVLDEGKSGLNCQESEFEVDDDGSLPFY 338
+E +G ++D S +N + + +V D ++ ++
Sbjct: 173 QEETGKRNIIDYNDSDVNNLDKDDQVGDISNIDYF 207
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 245 (91.3 bits), Expect = 2.7e-40, Sum P(4) = 2.7e-40
Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 893 GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV--ERSPDG--LVP-----HLP 943
GG VLEPKKGL + +L+LD+ SLYP+I+ +N+C+TTV PDG + P +P
Sbjct: 463 GGEVLEPKKGLLEN-VLILDYKSLYPTIMMAHNLCYTTVVTRDRPDGKTIKPPSGGEFVP 521
Query: 944 SSKTTGVLPELLKNLVQRRRMVKTWMK-TASGLKIQQLDIQQQALKLTANSMYGCLGFSN 1002
G++P +L++L+ +R K MK T+ + + LD Q A+K+ NS YG G++
Sbjct: 522 PEVFRGIVPSILEDLLNKRGDTKKRMKRTSDENEHRVLDATQLAIKILLNSFYGYSGYAR 581
Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
+R Y+ LA +T GR + +T DL+ + +++ ++ ++++
Sbjct: 582 ARLYSLTLANAVTSFGRSNILNTRDLINGRIG-KIVLRNSAALLL 625
Score = 187 (70.9 bits), Expect = 2.7e-40, Sum P(4) = 2.7e-40
Identities = 64/244 (26%), Positives = 110/244 (45%)
Query: 1033 LNLEVIYGDTDSIMIH--SXXXXXXXXXXXXXXVIQEVNKKY--KCLEIDLDGXXXXXXX 1088
+ L V YGDTDS+ +H + + E+ +E++ +
Sbjct: 638 VELSVAYGDTDSVFVHCKAKGDLSLEEVSLVGNRLSEIVSASLPDPMELEFESVAKRALL 697
Query: 1089 XXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
+ ++ I+ KG++ VRRDW L+ + L +L E + VE
Sbjct: 698 IAKKRYALWLFEPRNSGWENKIKVKGMETVRRDWCELTSITLNRVLEFVLIEGDVDKAVE 757
Query: 1149 SIHNSLMKVQEDMRSGQVA--LEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYST 1206
+ + V+ ++ G+ A +EK V+T+TLT+ ++Y + QPH+ VA LK+ T
Sbjct: 758 HVRKVVSDVR-NLDPGKDAGIIEKLVLTRTLTRKADSYKN--KQPHLTVAENLKKR---T 811
Query: 1207 GC--SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPV 1264
G S G +P++I +G RA PD +++ + ID+DYY +QI P
Sbjct: 812 GIMPSIGTRIPFVITAGKGL-------FVDRAEDPDYVRENNVP--IDVDYYVKKQILPP 862
Query: 1265 VSRL 1268
V R+
Sbjct: 863 VERI 866
Score = 140 (54.3 bits), Expect = 2.7e-40, Sum P(4) = 2.7e-40
Identities = 49/209 (23%), Positives = 94/209 (44%)
Query: 632 NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
+VL C E +LN+ + + D D++ G+N FD+ + R + + +
Sbjct: 246 DVLSC-MDETEMLNKFFEIICEYDPDIVAGYNHQDFDIPYITERVKALVAKGETINSV-- 302
Query: 692 LKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLN 751
+ R P G FG + GR++ D R Y+L ++K L+
Sbjct: 303 VGRDGSPI---GYRKFGLITRTEMK----GRVVVDALPLVRRAFSLKQYTLRAVSKELLS 355
Query: 752 KDRKEVGPHDVLKMFQTL-ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLW 810
+++ +V P ++ + + + + ++Y D+ L++EL+ L +L L +SG+L
Sbjct: 356 REKLDVPPLEMEEHWNDSGDKFRKFVDYARRDSELALELVLELRLLDKYIALAQVSGSLL 415
Query: 811 GKTLQGARAQRVEYLLLHAFRAK-KYIVP 838
+ + G + VE LLL F K + I+P
Sbjct: 416 QEIVDGGQTSMVETLLLREFGLKDRVILP 444
Score = 52 (23.4 bits), Expect = 2.7e-40, Sum P(4) = 2.7e-40
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 335 LPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEI 394
+ F ILDA ++ + + LFG+ G+ S C V + + Y +G L +
Sbjct: 3 MDFQILDADYEVVNDSGPVIRLFGR---GADGKSVCCFVPDFEPYFYLKASGDLHA---V 56
Query: 395 MKLEKDAEESRISPMAFRKKLQDV 418
+L KD E ++ + +K + V
Sbjct: 57 ARLIKDTFE-QVKKVEIVEKFEPV 79
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 291 (107.5 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 102/368 (27%), Positives = 168/368 (45%)
Query: 922 QEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQL 980
Q+ N+ VER+P + S G+LPE+L++L+ R+ K +K + K + L
Sbjct: 617 QQENLQDDQVERTPANNY-FVKSEVRRGLLPEILESLLAARKRAKNDLKVETDPFKRKVL 675
Query: 981 DIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL------- 1033
D +Q ALK++ANS+YG G + ++ +T GR ++ T + V+++
Sbjct: 676 DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYE 735
Query: 1034 -NLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXX 1092
N VIYGDTDS+M++ + V+ K+ I L+
Sbjct: 736 NNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKF-VHPIKLEFEKVYYPYLLIN 794
Query: 1093 XXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHN 1152
F Y+ ++ KG++ VRRD S L + + CL ++L ER + V +
Sbjct: 795 KKRYAGLYFTRPDTYDKMDCKGIETVRRDNSPLVANLMNSCLQKLLIERDPDGAVAYVK- 853
Query: 1153 SLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGD 1212
+V D+ ++ + VITK L K A AK Q HV++A ++K+ T GD
Sbjct: 854 ---QVIADLLCNRIDISHLVITKELAKTDYA---AK-QAHVELAAKMKKRDPGTAPKLGD 906
Query: 1213 TVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
VPY+IC ++ + Q+A P L + ID YY QQ+ + R+ I
Sbjct: 907 RVPYVIC-----AAAKNTPAYQKAEDP--LYVLENSVPIDATYYLEQQLSKPLLRIFEPI 959
Query: 1273 EGTSPERL 1280
G + E +
Sbjct: 960 LGDNAESI 967
Score = 134 (52.2 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 58/217 (26%), Positives = 104/217 (47%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GS VLC E +L++ + ++D D+L G+NI+ FD LL+RA +V + + +
Sbjct: 349 GSQVLC-HDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRN--FEYL 405
Query: 690 GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT-FLCSRDL-LREVSYSLTQL 745
GR+K RS + + G + + GR+ D F+ RD LR SY+L +
Sbjct: 406 GRIKNIRSVIKEQMLQSKQMGRRENQYVN--FEGRVPFDLLFVLLRDYKLR--SYTLNAV 461
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L + +++V H ++ Q ++ L Y DA+L + L+ L + ++
Sbjct: 462 SYHFLQEQKEDVH-HSIITDLQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMA 520
Query: 804 NISGNLWGKTLQGARAQRVEYL--LLHAFRAKKYIVP 838
++G L R Q+++ L LL + K +I+P
Sbjct: 521 RVTGVPLESLL--TRGQQIKVLSQLLRKAKTKGFIMP 555
Score = 120 (47.3 bits), Expect = 7.2e-37, Sum P(3) = 7.2e-37
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
Y G V+EPK+G Y I LDF SLYPSI+ +N+C+TT+
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTL 606
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 257 (95.5 bits), Expect = 5.5e-34, Sum P(4) = 5.5e-34
Identities = 89/330 (26%), Positives = 156/330 (47%)
Query: 949 GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFS-NSRFY 1006
GVLP +++ L++ R+ VK MK + L+ +Q ALK++ANS+YG G + +
Sbjct: 654 GVLPLIVEELIRARKNVKAMMKNEQNPITKMVLNGRQLALKISANSVYGYTGAAAGGQLP 713
Query: 1007 AKPLAELITQQGREILRSTVDLVQ-----NN---LNLEVIYGDTDSIMIHSXXXXXXXXX 1058
+A IT GR ++ T + V+ NN N V+YGDTDS+M+
Sbjct: 714 CLEIATSITTFGRSMIEKTKETVEAYYCKNNGFEHNATVVYGDTDSVMVKFGTNDVGEAM 773
Query: 1059 XXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMV 1118
+ ++K++ I L+ + + ++ ++ KG++ V
Sbjct: 774 RLGKDAAERISKEF-LHPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETV 832
Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
RRD+ +L +++ + L+++L E+ +E + + +D+ + + + V+TK+L
Sbjct: 833 RRDFCILIQQMMETVLNKLLIEKDLNSAIEYTKSKI----KDLLTNNIDMSLLVVTKSLG 888
Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
K Y PHV++A +LKQ +T + GD V YII +GT G AQ R
Sbjct: 889 KAE--YET--RLPHVELAKKLKQRDSATAPNVGDRVSYIII--KGTK-----GQAQYERA 937
Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
D L D ID ++Y +P+ SR+
Sbjct: 938 EDPLYVLDNNLSIDHNHYLDAIKNPL-SRI 966
Score = 131 (51.2 bits), Expect = 5.5e-34, Sum P(4) = 5.5e-34
Identities = 59/223 (26%), Positives = 100/223 (44%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GSNV+ + E+ +L + ++D D L G+NI FD+ +L+R + + I
Sbjct: 362 GSNVIWF-NDEKTMLEAWNEFVIRIDPDFLTGYNIINFDIPYILNRGTALNLKKLKY--I 418
Query: 690 GRLKRSEMPKLRKGRTI----FGSGASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQ 744
GR+K +P L K FG+ + I I GR+ D + L RD R SY+L
Sbjct: 419 GRIKN--IPSLVKDANFSSKQFGTHETKEIN--INGRIQFDVYDLIKRDY-RLKSYTLNY 473
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
++ L K++KE + ++ Q ES + Y D L + L+ L + ++
Sbjct: 474 VSFEFL-KEQKEDVHYSIMNDLQNENSESRKRIATYCIKDGLLPLRLIDKLLFIYNYVEM 532
Query: 803 TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
++G + L + +V L + YI+P TY+K
Sbjct: 533 ARVTGTPFVYLLTRGQQIKVTSQLYRKCKELNYIIPS--TYIK 573
Score = 124 (48.7 bits), Expect = 5.5e-34, Sum P(4) = 5.5e-34
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGL-------VPHLP 943
+ G VLEP KG Y + I LDF SLYPSI+ +N+C++T+ ++ D + + +P
Sbjct: 580 FEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKNNDEISDLNKNDITTVP 639
Query: 944 SSKT---------TGVLPELLKNLVQRRRMVKTWMK 970
GVLP +++ L++ R+ VK MK
Sbjct: 640 GKNNFKFVKGNVKRGVLPLIVEELIRARKNVKAMMK 675
Score = 54 (24.1 bits), Expect = 5.5e-34, Sum P(4) = 5.5e-34
Identities = 12/69 (17%), Positives = 34/69 (49%)
Query: 496 FLVKRKVKGPSWLSISKFSSC--PAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
+++ +K+ G SW+ K S ++ S C +EI + ++I + ++P +
Sbjct: 248 YIIDKKITGSSWIKCEKNSYIIRSKNKQSSNCTFEIDIHY-ENIEPMALENEYQKIPKLR 306
Query: 554 VTAINLKTV 562
+ + +++ +
Sbjct: 307 ILSFDIECI 315
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 245 (91.3 bits), Expect = 7.3e-34, Sum P(5) = 7.3e-34
Identities = 95/375 (25%), Positives = 169/375 (45%)
Query: 914 NSLYPSIIQEYNICFTTVERSPDGLV-PHLPSSKTT----GVLPELLKNLVQRRRMVKTW 968
N Y ++I++ +I +++ D +V P+ TT G+L ++L+ L+ R+ K
Sbjct: 611 NLCYTTLIKKRDIERWDLKKDEDYIVTPNGDMFVTTKQRKGLLAQILEELLSARKQAKRE 670
Query: 969 MKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVD 1027
+ K L+ +Q ALK++ANS+YG G +N + +A +T GR+++ T
Sbjct: 671 LAVEKDPFKKAVLNGRQLALKVSANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKK 730
Query: 1028 LVQNNLNL--------EVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDL 1079
V+ + +VIYGDTDS+M+ + V+ K+ I L
Sbjct: 731 EVEERYTIANGYSHDAQVIYGDTDSVMVKFGTKDLAEAMKLGQDASEYVSGKF-IKPIKL 789
Query: 1080 DGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILS 1139
+ + Y+ ++ KG++ VRRD LL + V + L IL
Sbjct: 790 EFEKVYFPYLLINKKRYAGLYWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILI 849
Query: 1140 ERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL 1199
++ + +++ D+ ++ + K VITK LTK E Y DAK Q HV++A R+
Sbjct: 850 DQDVPGAQAYVKDTIA----DLLQNKIDMSKLVITKALTK--ENY-DAK-QAHVELAQRM 901
Query: 1200 KQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQ 1259
K+ + GD V Y++ +G + + +R+ P + + + ID YY
Sbjct: 902 KKRDAGSAPGLGDRVAYVMV--KGATGSKNF---ERSEDPIYVLEHNVP--IDTKYYLDN 954
Query: 1260 QIHPVVSRLCASIEG 1274
Q+ + R+ I G
Sbjct: 955 QLAKPLGRIFEPILG 969
Score = 145 (56.1 bits), Expect = 7.3e-34, Sum P(5) = 7.3e-34
Identities = 57/195 (29%), Positives = 95/195 (48%)
Query: 651 LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
L ++D D+++G+NI+ FD LL RA+ +V WS+ R+ RS + G+
Sbjct: 381 LEQVDPDIIIGYNIANFDFPYLLDRAKHLKVKDFDFWSRT-RV-RSVAKETNFSSKQMGN 438
Query: 710 GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
+ + GRL D L RD LR SY+L + L + +++V + ++F+
Sbjct: 439 RDTKATNT--NGRLQLDMLQLVQRDYQLR--SYTLNSVCSHFLGEQKEDVHHSMITELFE 494
Query: 768 -TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL- 825
T ES L Y DA+L LM LS L ++ ++G + L AR Q+V++L
Sbjct: 495 GTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLL--ARGQQVKFLS 552
Query: 826 -LLHAFRAKKYIVPD 839
L +K ++P+
Sbjct: 553 QLFRKALEQKLVIPN 567
Score = 130 (50.8 bits), Expect = 7.3e-34, Sum P(5) = 7.3e-34
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD 936
Y G V+EP +G YD I LDF SLYPSI+Q +N+C+TT+ + D
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRD 622
Score = 46 (21.3 bits), Expect = 7.3e-34, Sum P(5) = 7.3e-34
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 334 SLPFYILDAHEQLSGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPL-FQTD 392
SL F ++A E T+ LFG + G+ S + VK+ + +Y P+ F D
Sbjct: 108 SLCFQSIEAEEGFLHGGQATIKLFGVTENGN---SVLLHVKDFKHYLYV--QAPVSFGPD 162
Query: 393 EIMKLEKDAEESRISP 408
+ K E P
Sbjct: 163 DCPKYRAFLETQLAMP 178
Score = 44 (20.5 bits), Expect = 7.3e-34, Sum P(5) = 7.3e-34
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 1327 CPSCSSTFDCPAVCSS 1342
C C + C +CSS
Sbjct: 1055 CQRCQGSMHCEVICSS 1070
Score = 37 (18.1 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 71 EEARGFIVDDDGLGYGDEGQEEDWSVAGL-PSSSDDESLDGQRSIKKQRIEKRGKKENNQ 129
E+ G V + GY D A L PS +L IKK+ IE+ K++
Sbjct: 575 EQYEGATVIEPTRGYYDV-PIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWDLKKDED 633
Query: 130 NVRKPN 135
+ PN
Sbjct: 634 YIVTPN 639
>UNIPROTKB|K7GS14 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 SUPFAM:SSF53098 InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:CU207412 EMBL:FP339588 Ensembl:ENSSSCT00000034075
Uniprot:K7GS14
Length = 562
Score = 328 (120.5 bits), Expect = 7.9e-34, Sum P(2) = 7.9e-34
Identities = 83/244 (34%), Positives = 132/244 (54%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D + FY LDA+E + G ++LFGKV + TH SCCV+VKN++R +Y +P
Sbjct: 342 DGEQVFQFYWLDAYED-QYSQPGVVFLFGKVWIELAETHVSCCVMVKNIERTLYFLPR-- 398
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
+T K++ + + + +P+ ++DV +IA + + + PV++ Y
Sbjct: 399 --ET----KIDLNTGKEKGTPVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNY 445
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 446 AFEIPDVPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 504
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P +SWCK+E P + V K V PP+ V ++++KT+ N +
Sbjct: 505 LEVKNPQLLNQP--ISWCKFEAMALKPDLVNVI---KDVGP-PPLVVMSLSMKTMQNAKT 558
Query: 568 DVNE 571
NE
Sbjct: 559 HENE 562
Score = 122 (48.0 bits), Expect = 7.9e-34, Sum P(2) = 7.9e-34
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGLPSSSD 104
Y ++ +Y+ V ED+Y LV R+++ +IVDDDG+GY ++G+E +
Sbjct: 55 YEVEDFTSVYEEVDEDQYSKLVQARQDD--DWIVDDDGIGYVEDGREI------FDDDLE 106
Query: 105 DESLDGQRSIKKQRIEKRGKKENNQNV-RKPNPSLTAAAAMMGKQ 148
D++LD Q K + + K+ + V KPN + A G++
Sbjct: 107 DDALDSQEKGKDDKARNKDKRNVKKTVVTKPNNIKSMFIASAGRK 151
Score = 37 (18.1 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 323 QESEFEVDDDGSLPFYILDAHE 344
Q+ ++ VDDDG Y+ D E
Sbjct: 80 QDDDWIVDDDGI--GYVEDGRE 99
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 236 (88.1 bits), Expect = 4.6e-32, Sum P(3) = 4.6e-32
Identities = 61/179 (34%), Positives = 97/179 (54%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------S 934
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R +
Sbjct: 573 KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLT 632
Query: 935 PDGLV--P----HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
D + P + +S G+LP++L+NL+ R+ K + K L+ Q LD +Q AL
Sbjct: 633 EDQFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 692
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
K++ANS+YG G R +++ +T GR+++ T LV+ +E Y + ++
Sbjct: 693 KVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVV 751
Score = 168 (64.2 bits), Expect = 9.3e-25, Sum P(3) = 9.3e-25
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + K
Sbjct: 621 LRPGAAQKLGLTEDQFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAKETDP 679
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
L+ Q LD +Q ALK++ANS+YG G R +++ +T GR+++ T LV+
Sbjct: 680 LRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYT 739
Query: 1035 LE--------VIYGDTDSIM 1046
+E V+YGDTDS+M
Sbjct: 740 VENGYSTSAKVVYGDTDSVM 759
Score = 136 (52.9 bits), Expect = 4.6e-32, Sum P(3) = 4.6e-32
Identities = 47/168 (27%), Positives = 78/168 (46%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L ++L +R V + V D+ ++
Sbjct: 820 HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQD----VISDLLCNRI 875
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 876 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 926
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 927 SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 974
Score = 127 (49.8 bits), Expect = 4.6e-32, Sum P(3) = 4.6e-32
Identities = 54/186 (29%), Positives = 90/186 (48%)
Query: 654 LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRL--KRSEMPKLRKGRTIFGSGA 711
+D DV+ G+NI FDL L+ RAQ +VP + +GR+ RS + + G
Sbjct: 387 MDPDVITGYNIQNFDLPYLISRAQTLKVPG--FPLLGRVIGLRSNIRESSFQSRQTGRRD 444
Query: 712 SPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
S ++S + GR+ D + LLRE SY+L ++ L + +++V H ++ Q
Sbjct: 445 SK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDV-QHSIITDLQN 498
Query: 769 L--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYL 825
++ L Y DA+L + L+ L VL ++ ++G G L +G + + V L
Sbjct: 499 GNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQL 558
Query: 826 LLHAFR 831
L A R
Sbjct: 559 LRQAMR 564
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 236 (88.1 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 61/179 (34%), Positives = 97/179 (54%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------S 934
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R +
Sbjct: 573 KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLT 632
Query: 935 PDGLV--P----HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
D + P + +S G+LP++L+NL+ R+ K + K L+ Q LD +Q AL
Sbjct: 633 EDQFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 692
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
K++ANS+YG G R +++ +T GR+++ T LV+ +E Y + ++
Sbjct: 693 KVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVV 751
Score = 168 (64.2 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + K
Sbjct: 621 LRPGAAQKLGLTEDQFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAKETDP 679
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
L+ Q LD +Q ALK++ANS+YG G R +++ +T GR+++ T LV+
Sbjct: 680 LRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYT 739
Query: 1035 LE--------VIYGDTDSIM 1046
+E V+YGDTDS+M
Sbjct: 740 VENGYSTSAKVVYGDTDSVM 759
Score = 136 (52.9 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 47/168 (27%), Positives = 78/168 (46%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L ++L +R V + V D+ ++
Sbjct: 820 HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQD----VISDLLCNRI 875
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 876 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 926
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 927 SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 974
Score = 128 (50.1 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 60/210 (28%), Positives = 98/210 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +VP + +
Sbjct: 364 GAKVQSYEREED-LLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPG--FPLL 420
Query: 690 GRL--KRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQ 744
GR+ RS + + G S ++S + GR+ D + LLRE SY+L
Sbjct: 421 GRVIGLRSNIRESSFQSRQTGRRDSK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNA 475
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
++ L + +++V H ++ Q ++ L Y DA+L + L+ L VL ++
Sbjct: 476 VSFHFLGEQKEDV-QHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEM 534
Query: 803 TNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
++G G L +G + + V LL A R
Sbjct: 535 ARVTGVPLGYLLSRGQQVKVVSQLLRQAMR 564
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 235 (87.8 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 60/174 (34%), Positives = 98/174 (56%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------SPDGLV-- 939
Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R PD +
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 940 P----HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSM 994
P + SS G+LP++L+NL+ R+ K + + L+ Q LD +Q ALK++ANS+
Sbjct: 639 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALKVSANSV 698
Query: 995 YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
YG G + +++ +T GR+++ T LV++ +E Y D ++ +++
Sbjct: 699 YGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGY-DANAKVVY 751
Score = 163 (62.4 bits), Expect = 3.1e-24, Sum P(3) = 3.1e-24
Identities = 44/140 (31%), Positives = 76/140 (54%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + SS G+LP++L+NL+ R+ K + +
Sbjct: 620 LRPGAAQKLGLKPDEFIKTPTG-DEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDP 678
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--- 1031
L+ Q LD +Q ALK++ANS+YG G + +++ +T GR+++ T LV++
Sbjct: 679 LRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYT 738
Query: 1032 -----NLNLEVIYGDTDSIM 1046
+ N +V+YGDTDS+M
Sbjct: 739 VENGYDANAKVVYGDTDSVM 758
Score = 146 (56.5 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 49/168 (29%), Positives = 80/168 (47%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L +IL +R + V + V D+ ++
Sbjct: 819 HDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VISDLLCNRI 874
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 875 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 925
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 926 GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 973
Score = 119 (46.9 bits), Expect = 6.0e-32, Sum P(3) = 6.0e-32
Identities = 57/209 (27%), Positives = 97/209 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW-SK 688
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +V + +
Sbjct: 363 GAKVQSYEREED-LLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGR 421
Query: 689 IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQL 745
+ L+ + + R + G S ++S + GR+ D + LLRE SY+L +
Sbjct: 422 VTGLRSNIRDSSFQSRQV-GRRDSK-VISMV-GRVQMDML---QVLLREHKLRSYTLNAV 475
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L + +++V H ++ Q ++ L Y DA+L + L+ L VL ++
Sbjct: 476 SFHFLGEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMA 534
Query: 804 NISGNLWGKTL-QGARAQRVEYLLLHAFR 831
++G G L +G + + V LL A R
Sbjct: 535 RVTGVPLGYLLTRGQQVKVVSQLLRQAMR 563
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 234 (87.4 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 61/181 (33%), Positives = 99/181 (54%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------S 934
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R
Sbjct: 570 KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLK 629
Query: 935 PDGLV--P----HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
PD + P + +S G+LP++L+NL+ R+ K + + L+ Q LD +Q AL
Sbjct: 630 PDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLAL 689
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
K++ NS+YG G + +++ +T GR+++ T LV+ LE Y D ++ ++
Sbjct: 690 KVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGY-DANAKVV 748
Query: 1048 H 1048
+
Sbjct: 749 Y 749
Score = 156 (60.0 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 43/140 (30%), Positives = 73/140 (52%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + +
Sbjct: 618 LRPGAAQKLGLKPDEFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAQETDP 676
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
L+ Q LD +Q ALK++ NS+YG G + +++ +T GR+++ T LV+
Sbjct: 677 LRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYT 736
Query: 1035 LE--------VIYGDTDSIM 1046
LE V+YGDTDS+M
Sbjct: 737 LENGYDANAKVVYGDTDSVM 756
Score = 142 (55.0 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 48/168 (28%), Positives = 80/168 (47%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L +IL +R + V + V D+ ++
Sbjct: 817 HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VISDLLCNRI 872
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + + GD VPY+I
Sbjct: 873 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPNLGDRVPYVII------- 923
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 924 GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 971
Score = 123 (48.4 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 57/209 (27%), Positives = 97/209 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW-SK 688
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +V + +
Sbjct: 361 GAKVQSYEREED-LLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGR 419
Query: 689 IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQL 745
+ L+ + + R + G S ++S + GR+ D + LLRE SY+L +
Sbjct: 420 VTGLRSNIRDSSFQSRQV-GRRDSK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNAV 473
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L + +++V H ++ Q ++ L Y DA+L + L+ L VL ++
Sbjct: 474 SFHFLGEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMA 532
Query: 804 NISGNLWGKTL-QGARAQRVEYLLLHAFR 831
++G G L +G + + V LL A R
Sbjct: 533 RVTGVPLGYLLSRGQQVKVVSQLLRQAMR 561
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 234 (87.4 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 61/181 (33%), Positives = 99/181 (54%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVER---------S 934
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R
Sbjct: 570 KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLK 629
Query: 935 PDGLV--P----HLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
PD + P + +S G+LP++L+NL+ R+ K + + L+ Q LD +Q AL
Sbjct: 630 PDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLAL 689
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
K++ NS+YG G + +++ +T GR+++ T LV+ LE Y D ++ ++
Sbjct: 690 KVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGY-DANAKVV 748
Query: 1048 H 1048
+
Sbjct: 749 Y 749
Score = 156 (60.0 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 43/140 (30%), Positives = 73/140 (52%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + +
Sbjct: 618 LRPGAAQKLGLKPDEFIKTPTG-DEFVKASVRKGLLPQILENLLSARKRAKAELAQETDP 676
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
L+ Q LD +Q ALK++ NS+YG G + +++ +T GR+++ T LV+
Sbjct: 677 LRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYT 736
Query: 1035 LE--------VIYGDTDSIM 1046
LE V+YGDTDS+M
Sbjct: 737 LENGYDANAKVVYGDTDSVM 756
Score = 142 (55.0 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 48/168 (28%), Positives = 80/168 (47%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L +IL +R + V + V D+ ++
Sbjct: 817 HDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKD----VISDLLCNRI 872
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + + GD VPY+I
Sbjct: 873 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPNLGDRVPYVII------- 923
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 924 GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 971
Score = 123 (48.4 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 57/209 (27%), Positives = 97/209 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW-SK 688
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +V + +
Sbjct: 361 GAKVQSYEREED-LLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGR 419
Query: 689 IGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQL 745
+ L+ + + R + G S ++S + GR+ D + LLRE SY+L +
Sbjct: 420 VTGLRSNIRDSSFQSRQV-GRRDSK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNAV 473
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L + +++V H ++ Q ++ L Y DA+L + L+ L VL ++
Sbjct: 474 SFHFLGEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMA 532
Query: 804 NISGNLWGKTL-QGARAQRVEYLLLHAFR 831
++G G L +G + + V LL A R
Sbjct: 533 RVTGVPLGYLLSRGQQVKVVSQLLRQAMR 561
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 232 (86.7 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 61/169 (36%), Positives = 94/169 (55%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLV 939
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R GL
Sbjct: 574 KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLT 633
Query: 940 PH----LPSS----KTT---GVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
P+ KT+ G+LP++L+NL+ R+ K + K L+ Q LD +Q AL
Sbjct: 634 KDQFIKTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 693
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
K++ANS+YG G + +++ +T GR+++ T LV++ +E
Sbjct: 694 KVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVE 742
Score = 167 (63.8 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 44/140 (31%), Positives = 76/140 (54%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + K
Sbjct: 622 LRPGAAQKLGLTKDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDP 680
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--- 1031
L+ Q LD +Q ALK++ANS+YG G + +++ +T GR+++ T LV++
Sbjct: 681 LRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYT 740
Query: 1032 -----NLNLEVIYGDTDSIM 1046
+ N +V+YGDTDS+M
Sbjct: 741 VENGYSANAKVVYGDTDSVM 760
Score = 142 (55.0 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 48/168 (28%), Positives = 82/168 (48%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L ++L +R D ++ ++ V D+ ++
Sbjct: 821 HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR---DPAGAVAHA-QDVISDLLCNRI 876
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 877 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 927
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 928 GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 123 (48.4 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 59/210 (28%), Positives = 97/210 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +V + + +
Sbjct: 365 GAKVQSYEREEE-LLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPF--L 421
Query: 690 GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQ 744
GR+ RS + G S ++S + GR+ D + LLRE SY+L
Sbjct: 422 GRVSGLRSNIRDSSFQSKQTGRRDSK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNA 476
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
++ L + +++V H ++ Q ++ L Y DA+L + L+ L VL ++
Sbjct: 477 VSFHFLGEQKEDV-QHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEM 535
Query: 803 TNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
++G G L +G + + V LL A R
Sbjct: 536 ARVTGVPLGYLLSRGQQVKVVSQLLRQAMR 565
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 232 (86.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 61/169 (36%), Positives = 94/169 (55%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLV 939
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R GL
Sbjct: 574 KTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLT 633
Query: 940 PH----LPSS----KTT---GVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
P+ KT+ G+LP++L+NL+ R+ K + K L+ Q LD +Q AL
Sbjct: 634 KDQFIKTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 693
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE 1036
K++ANS+YG G + +++ +T GR+++ T LV++ +E
Sbjct: 694 KVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVE 742
Score = 167 (63.8 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 44/140 (31%), Positives = 76/140 (54%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + K
Sbjct: 622 LRPGAAQKLGLTKDQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDP 680
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN--- 1031
L+ Q LD +Q ALK++ANS+YG G + +++ +T GR+++ T LV++
Sbjct: 681 LRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYT 740
Query: 1032 -----NLNLEVIYGDTDSIM 1046
+ N +V+YGDTDS+M
Sbjct: 741 VENGYSANAKVVYGDTDSVM 760
Score = 142 (55.0 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 48/168 (28%), Positives = 82/168 (48%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L ++L +R D ++ ++ V D+ ++
Sbjct: 821 HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR---DPAGAVAHA-QDVISDLLCNRI 876
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 877 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 927
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
G++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 928 GAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 123 (48.4 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 59/210 (28%), Positives = 97/210 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +V + + +
Sbjct: 365 GAKVQSYEREEE-LLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPF--L 421
Query: 690 GRLK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQ 744
GR+ RS + G S ++S + GR+ D + LLRE SY+L
Sbjct: 422 GRVSGLRSNIRDSSFQSKQTGRRDSK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNA 476
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
++ L + +++V H ++ Q ++ L Y DA+L + L+ L VL ++
Sbjct: 477 VSFHFLGEQKEDV-QHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEM 535
Query: 803 TNISGNLWGKTL-QGARAQRVEYLLLHAFR 831
++G G L +G + + V LL A R
Sbjct: 536 ARVTGVPLGYLLSRGQQVKVVSQLLRQAMR 565
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 240 (89.5 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 63/179 (35%), Positives = 99/179 (55%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLV 939
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R GL
Sbjct: 574 KTEGGEDYTGATVIEPLKGYYDVPITTLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLT 633
Query: 940 PH----LPSS----KTT---GVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
P+ KT+ G+LP++L+NL+ R+ K + K L+ Q LD +Q AL
Sbjct: 634 ADQFIKTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 693
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
K++ANS+YG G + +++ +T GR+++ T LV++ +E YG + ++
Sbjct: 694 KVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGTSAKVV 752
Score = 167 (63.8 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 44/140 (31%), Positives = 75/140 (53%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + ++P G + +S G+LP++L+NL+ R+ K + K
Sbjct: 622 LRPGAAQKLGLTADQFIKTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDP 680
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
L+ Q LD +Q ALK++ANS+YG G + +++ +T GR+++ T LV++
Sbjct: 681 LRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYT 740
Query: 1035 LE--------VIYGDTDSIM 1046
+E V+YGDTDS+M
Sbjct: 741 VENGYGTSAKVVYGDTDSVM 760
Score = 136 (52.9 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 47/168 (27%), Positives = 81/168 (48%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L ++L +R D ++ ++ V D+ ++
Sbjct: 821 HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDR---DPAGAVAHA-QDVISDLLCNRI 876
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 877 DISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 927
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 928 SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 119 (46.9 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 53/186 (28%), Positives = 89/186 (47%)
Query: 654 LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLK--RSEMPKLRKGRTIFGSGA 711
+D DV+ G+NI FDL L+ RAQ +V + + +GR+ RS + G
Sbjct: 388 MDPDVITGYNIQNFDLPYLISRAQTLKVQTFPF--LGRVSGLRSNIRDSSFQSKQTGRRD 445
Query: 712 SPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLTQLAKTQLNKDRKEVGPHDVLKMFQT 768
S ++S + GR+ D + LLRE SY+L ++ L + +++V H ++ Q
Sbjct: 446 SK-VVSMV-GRVQMDML---QVLLREYKLRSYTLNAVSFHFLGEQKEDV-QHSIITDLQN 499
Query: 769 L--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTL-QGARAQRVEYL 825
++ L Y DA+L + L+ L VL ++ ++G G L +G + + V L
Sbjct: 500 GNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQL 559
Query: 826 LLHAFR 831
L A R
Sbjct: 560 LRQAMR 565
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 247 (92.0 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 87/330 (26%), Positives = 157/330 (47%)
Query: 949 GVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNS-RFY 1006
G+LP +++ L++ R+ VK +K + + L+ +Q ALK++ANS+YG G S+ +
Sbjct: 651 GILPLIVEELIEARKKVKLLIKNEKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLP 710
Query: 1007 AKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYGDTDSIMIHSXXXXXXXXX 1058
+A IT GR ++ T + V++ N VIYGDTDS+M+
Sbjct: 711 CLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVKFGTNNIEEAM 770
Query: 1059 XXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMV 1118
+ ++K++ I L+ + + ++ ++ KG++ V
Sbjct: 771 TLGKDAAERISKEFLS-PIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETV 829
Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
RRD+ +L +++ + L+++L E++ +E + K++E + + + + V+TK+L
Sbjct: 830 RRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKS---KIKE-LLTNNIDMSLLVVTKSLG 885
Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
K Y PHV++A +LKQ +T + GD V YII +G G AQ R
Sbjct: 886 KTD--YET--RLPHVELAKKLKQRDSATAPNVGDRVSYIIV--KGVK-----GQAQYERA 934
Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
D L D ID ++Y P+ SR+
Sbjct: 935 EDPLYVLDNNLAIDYNHYLDAIKSPL-SRI 963
Score = 120 (47.3 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 56/221 (25%), Positives = 99/221 (44%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GSNV+ + E+ LL + ++D D L G+NI FDL +L+R + + +
Sbjct: 359 GSNVIWF-NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKF--L 415
Query: 690 GRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQLA 746
GR+K S + FG+ + I I GR+ D + L RD + SY+L ++
Sbjct: 416 GRIKNVASTVKDSSFSSKQFGTHETKEIN--IFGRIQFDVYDLIKRDYKLK-SYTLNYVS 472
Query: 747 KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
L K++KE + ++ Q + ES + Y D L + L+ L + ++
Sbjct: 473 FEFL-KEQKEDVHYSIMNDLQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMAR 531
Query: 805 ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
++G + L + +V L + Y++P TY+K
Sbjct: 532 VTGTPFVYLLTRGQQIKVTSQLYRKCKELNYVIPS--TYMK 570
Score = 116 (45.9 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP--------DGLVP-- 940
Y G VLEP KG Y + I LDF SLYPSI+ +N+C++T+ +S D +
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 941 ---HLPSSKTT---GVLPELLKNLVQRRRMVKTWMK 970
+L K G+LP +++ L++ R+ VK +K
Sbjct: 637 GKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIK 672
Score = 57 (25.1 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 11/69 (15%), Positives = 35/69 (50%)
Query: 496 FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
+++ K+ G SW++ K + +++S C +EI + S + + + ++P +
Sbjct: 245 YIIDHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDI-SYEHVEPITLENEYQQIPKLR 303
Query: 554 VTAINLKTV 562
+ + +++ +
Sbjct: 304 ILSFDIECI 312
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 247 (92.0 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 87/330 (26%), Positives = 157/330 (47%)
Query: 949 GVLPELLKNLVQRRRMVKTWMKTA-SGLKIQQLDIQQQALKLTANSMYGCLGFSNS-RFY 1006
G+LP +++ L++ R+ VK +K + + L+ +Q ALK++ANS+YG G S+ +
Sbjct: 651 GILPLIVEELIEARKKVKLLIKNEKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLP 710
Query: 1007 AKPLAELITQQGREILRSTVDLVQN--------NLNLEVIYGDTDSIMIHSXXXXXXXXX 1058
+A IT GR ++ T + V++ N VIYGDTDS+M+
Sbjct: 711 CLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVKFGTNNIEEAM 770
Query: 1059 XXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMV 1118
+ ++K++ I L+ + + ++ ++ KG++ V
Sbjct: 771 TLGKDAAERISKEFLS-PIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDKMDCKGIETV 829
Query: 1119 RRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLT 1178
RRD+ +L +++ + L+++L E++ +E + K++E + + + + V+TK+L
Sbjct: 830 RRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKS---KIKE-LLTNNIDMSLLVVTKSLG 885
Query: 1179 KPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARH 1238
K Y PHV++A +LKQ +T + GD V YII +G G AQ R
Sbjct: 886 KTD--YET--RLPHVELAKKLKQRDSATAPNVGDRVSYIIV--KGVK-----GQAQYERA 934
Query: 1239 PDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
D L D ID ++Y P+ SR+
Sbjct: 935 EDPLYVLDNNLAIDYNHYLDAIKSPL-SRI 963
Score = 120 (47.3 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 56/221 (25%), Positives = 99/221 (44%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GSNV+ + E+ LL + ++D D L G+NI FDL +L+R + + +
Sbjct: 359 GSNVIWF-NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKF--L 415
Query: 690 GRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDLLREVSYSLTQLA 746
GR+K S + FG+ + I I GR+ D + L RD + SY+L ++
Sbjct: 416 GRIKNVASTVKDSSFSSKQFGTHETKEIN--IFGRIQFDVYDLIKRDYKLK-SYTLNYVS 472
Query: 747 KTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
L K++KE + ++ Q + ES + Y D L + L+ L + ++
Sbjct: 473 FEFL-KEQKEDVHYSIMNDLQNESPESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMAR 531
Query: 805 ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVK 845
++G + L + +V L + Y++P TY+K
Sbjct: 532 VTGTPFVYLLTRGQQIKVTSQLYRKCKELNYVIPS--TYMK 570
Score = 116 (45.9 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSP--------DGLVP-- 940
Y G VLEP KG Y + I LDF SLYPSI+ +N+C++T+ +S D +
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 941 ---HLPSSKTT---GVLPELLKNLVQRRRMVKTWMK 970
+L K G+LP +++ L++ R+ VK +K
Sbjct: 637 GKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIK 672
Score = 57 (25.1 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 11/69 (15%), Positives = 35/69 (50%)
Query: 496 FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVT 553
+++ K+ G SW++ K + +++S C +EI + S + + + ++P +
Sbjct: 245 YIIDHKITGSSWINCKKGHYYIRNKNKKISNCTFEIDI-SYEHVEPITLENEYQQIPKLR 303
Query: 554 VTAINLKTV 562
+ + +++ +
Sbjct: 304 ILSFDIECI 312
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 221 (82.9 bits), Expect = 8.1e-31, Sum P(4) = 8.1e-31
Identities = 86/341 (25%), Positives = 151/341 (44%)
Query: 944 SSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSN 1002
+ + G+LP +L L+ R+ K ++ K L+ +Q ALK++ANS+YG G +
Sbjct: 656 TKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATV 715
Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSXXXXX 1054
+ ++ +T GR ++ T VQ ++ V+YGDTDS+M+
Sbjct: 716 GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDL 775
Query: 1055 XXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKG 1114
+ V+ +K I+L+ + + ++ +++KG
Sbjct: 776 KEAMDLGTEAAKYVSTLFKH-PINLEFEKAYFPYLLINKKRYAGLFWTNPDKFDKLDQKG 834
Query: 1115 LDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVIT 1174
L VRRD L V + L +IL ER+ + + + ++ D+ +V + K +I+
Sbjct: 835 LASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI----NDILHNRVDISKLIIS 890
Query: 1175 KTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQ 1234
KTL P P QPH +A R+K+ G + GD V Y+I G + +
Sbjct: 891 KTLA-PNYTNP----QPHAVLAERMKRRE-GVGPNVGDRVDYVII-------GGNDKLYN 937
Query: 1235 RARHPDELKKGDGKWMIDIDYYASQQI-HPVVSRLCASIEG 1274
RA P L + +D YY + Q+ +P++S + A I G
Sbjct: 938 RAEDP--LFVLENNIQVDSRYYLTNQLQNPIIS-IVAPIIG 975
Score = 135 (52.6 bits), Expect = 8.1e-31, Sum P(4) = 8.1e-31
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----SPDGLV 939
Y G V+EP +G YD I LDFNSLYPSI+ +N+C+TT VER D ++
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 940 -PH----LPSSKTTGVLPELLKNLVQRRRMVK 966
P+ + + + G+LP +L L+ R+ K
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAK 678
Score = 129 (50.5 bits), Expect = 8.1e-31, Sum P(4) = 8.1e-31
Identities = 52/206 (25%), Positives = 101/206 (49%)
Query: 632 NVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGR 691
+++ ++E +L+ + K+D DV++G+N + FD+ LL+RA+ +V + GR
Sbjct: 371 SMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPY--FGR 428
Query: 692 LK--RSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDT--FLCSRDLLREVSYSLTQLAK 747
LK + E+ + +G+ + + I GRL D F+ LR SY+L ++
Sbjct: 429 LKTVKQEIKESVFSSKAYGTRETKNVN--IDGRLQLDLLQFIQREYKLR--SYTLNAVSA 484
Query: 748 TQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNI 805
L + +++V + ++ Q E+ L Y DA+L + LM L L ++ +
Sbjct: 485 HFLGEQKEDVH-YSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARV 543
Query: 806 SGNLWGKTLQGARAQRVEYLLLHAFR 831
+G + L AR Q+++ ++ FR
Sbjct: 544 TGVPFSYLL--ARGQQIK-VVSQLFR 566
Score = 52 (23.4 bits), Expect = 8.1e-31, Sum P(4) = 8.1e-31
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 502 VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVD 532
+ G SW+++ K+S RVS C+ E++++
Sbjct: 264 IVGMSWITLPKGKYSMIEPNNRVSSCQLEVSIN 296
Score = 37 (18.1 bits), Expect = 7.4e-21, Sum P(3) = 7.4e-21
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 837 VPDKFTYVKETKMAKQRSNHGVEDRNVEEL 866
+ D+ T E K+ +Q +HGV V +
Sbjct: 14 IDDEDTPQLEKKIKRQSIDHGVGSEPVSTI 43
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 238 (88.8 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 62/179 (34%), Positives = 98/179 (54%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD----GLV 939
K + G Y G V+EP KG YD I LDF+SLYPSI+ +N+C+TT+ R GL
Sbjct: 574 KSEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLT 633
Query: 940 P----HLPSS----KTT---GVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQAL 987
P+ KT+ G+LP++L+NL+ R+ K + K L+ Q LD +Q AL
Sbjct: 634 EDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLAL 693
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIM 1046
K++ANS+YG G + +++ +T GR+++ T LV++ +E Y + ++
Sbjct: 694 KVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVV 752
Score = 169 (64.5 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 45/140 (32%), Positives = 75/140 (53%)
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASG 974
L P Q+ + R+P G + +S G+LP++L+NL+ R+ K + K
Sbjct: 622 LRPGTAQKLGLTEDQFIRTPTG-DEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDP 680
Query: 975 LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
L+ Q LD +Q ALK++ANS+YG G + +++ +T GR+++ T LV++
Sbjct: 681 LRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYT 740
Query: 1035 LE--------VIYGDTDSIM 1046
+E V+YGDTDS+M
Sbjct: 741 VENGYSTSAKVVYGDTDSVM 760
Score = 142 (55.0 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 48/168 (28%), Positives = 79/168 (47%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KGL+ VRRD L + L ++L +R E V + V D+ ++
Sbjct: 821 HDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQD----VISDLLCNRI 876
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK LT+ Y A Q HV++A R+++ + S GD VPY+I
Sbjct: 877 DISQLVITKELTRAASDY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVII------- 927
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEG 1274
++ G+A + D L + ID YY QQ+ + R+ I G
Sbjct: 928 SAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILG 975
Score = 103 (41.3 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 56/209 (26%), Positives = 93/209 (44%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
G+ V E E LL + +D DV+ G+NI FDL L+ RAQ +V + + +
Sbjct: 365 GAKVQSYEKEED-LLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPF--L 421
Query: 690 GRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREV---SYSLT 743
GR+ +R F S G + + GR+ D + LLRE SY+L
Sbjct: 422 GRVA-GLCSNIRDSS--FQSKQTGRRDTKVVSMVGRVQMDML---QVLLREYKLRSYTLN 475
Query: 744 QLAKTQLNKDRKEVGPHDVLKMFQTL--ESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
++ L + +++V H ++ Q ++ L Y DA+L + L+ L VL +
Sbjct: 476 AVSFHFLGEQKEDV-QHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVE 534
Query: 802 LTNISGNLWGKTL-QGARAQRVEYLLLHA 829
+ ++G L +G + + V LL A
Sbjct: 535 MARVTGVPLSYLLSRGQQVKVVSQLLRQA 563
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 232 (86.7 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 63/178 (35%), Positives = 95/178 (53%)
Query: 885 GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-ERSPDGLVP--- 940
G G Y G VL+PK G YD+ + LDF SLYPSI+ +N+C+TT+ + +VP
Sbjct: 564 GADGVGYEGATVLDPKIGFYDRPVATLDFASLYPSIMMAHNLCYTTLLTKDQLNIVPPED 623
Query: 941 --HLPS-------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
PS S+ G+LPE+L+ L+ R+ K +K K LD +Q ALK++
Sbjct: 624 REQSPSGDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEKDPFKRAVLDGRQLALKVS 683
Query: 991 ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
ANS+YG G + + ++ T GRE++ +T LVQ + Y +TD +I+
Sbjct: 684 ANSVYGFTGATVGKMPCLAISASTTSYGREMIMTTRQLVQEHYTRANGY-ETDCEVIY 740
Score = 166 (63.5 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 45/126 (35%), Positives = 71/126 (56%)
Query: 932 ERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLT 990
E+SP G + +S+ G+LPE+L+ L+ R+ K +K K LD +Q ALK++
Sbjct: 625 EQSPSGDW-FVRNSRQRGLLPEILEELLAARKRAKNDLKAEKDPFKRAVLDGRQLALKVS 683
Query: 991 ANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--------NLEVIYGDT 1042
ANS+YG G + + ++ T GRE++ +T LVQ + + EVIYGDT
Sbjct: 684 ANSVYGFTGATVGKMPCLAISASTTSYGREMIMTTRQLVQEHYTRANGYETDCEVIYGDT 743
Query: 1043 DSIMIH 1048
DS+M++
Sbjct: 744 DSVMVN 749
Score = 126 (49.4 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
++ ++ KG++ VRRD LL + V CL +IL + + V + V D+ ++
Sbjct: 807 HDKMDSKGIETVRRDNCLLVRNVVTTCLERILIGKDVQGAVGYVKG----VIADLLMNKI 862
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYII 1218
L VI+K LT+ + Y + K HV++A ++++ +T + GD VPY+I
Sbjct: 863 DLSLLVISKGLTQDADEY-EGKIA-HVELAKKMRKRDPATAPAVGDRVPYVI 912
Score = 120 (47.3 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 68/281 (24%), Positives = 121/281 (43%)
Query: 572 IVSASVVCCHK------AKIDTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR 625
I+S + CC + AKID P++ + S +V K+DG + +
Sbjct: 293 IMSIDIECCGRKGCFPEAKID-PVIQ-------IASMVSVSGKMDGPVVKNIMTLGSCA- 343
Query: 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSS- 684
S G+ V+ + E +L R L + D D+++G+NI FDL L RA ++
Sbjct: 344 -SIVGAEVMSF-NDEAEMLLRWRDLLVESDPDIIIGYNILNFDLPYLYERADALKIGKKF 401
Query: 685 -MWSKIGRLKRSEMPKLRKGR---TIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSY 740
+W GR++ S ++R G+ +G+ I I GR+ D + + SY
Sbjct: 402 QVW---GRVRGSHT-RMRDGQFSSKAYGTHEYKDIT--IEGRVQFDLLTAIQRDHKLSSY 455
Query: 741 SLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPL 798
SL ++ L + +++V H + Q E+ L Y DA+L L+ L
Sbjct: 456 SLNSVSAHFLGEQKEDVH-HSAIADLQAGNEETRRRLAVYCLKDAYLPQRLLDKLMYTYN 514
Query: 799 TRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
++ ++G L ++ +V LL AK +++P+
Sbjct: 515 YIEMARVTGVPLSYLLTRGQSIKVFSQLLRKAAAKGFVIPN 555
Score = 48 (22.0 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
Identities = 17/100 (17%), Positives = 46/100 (46%)
Query: 496 FLVKRKVKGPSWLSISKFS-SCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTV 554
F+V KV G +W+ + + + ++ C+ E + K I + ++ + V P+ +
Sbjct: 235 FMVDCKVVGGNWVELPAGAYQLETARPMTHCQIEAHIRYDKLISHAPDGEY-SSVAPLRI 293
Query: 555 TAINLKTVFNK----RQDVNEIVSASVVCCHKAKIDTPML 590
+I+++ K ++ ++ + + K+D P++
Sbjct: 294 MSIDIECCGRKGCFPEAKIDPVIQIASMVSVSGKMDGPVV 333
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 299 (110.3 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 102/373 (27%), Positives = 167/373 (44%)
Query: 918 PSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LK 976
P ++ N+ +V ++P G P + G+LPE+L+ L+ R+ K +K A +
Sbjct: 630 PEDARKLNLPPESVNKTPSGETFVKPDVQK-GILPEILEELLAARKRAKADLKEAKDPFE 688
Query: 977 IQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNL--- 1033
LD +Q ALK++ANS+YG G + + ++ +T GR+++ T LV++
Sbjct: 689 RAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTL 748
Query: 1034 -----NLEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXX 1088
N EVIYGDTDS+M+ ++ + I L+
Sbjct: 749 GGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTF-IKPIKLEFEKIYFPY 807
Query: 1089 XXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVE 1148
+ + ++ ++ KG++ VRRD LL K + CL +IL +R V+
Sbjct: 808 LLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQ 867
Query: 1149 SIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGC 1208
+ N++ D+ +V L VITK LTK E Y A HV++A R+++ +T
Sbjct: 868 YVKNTI----SDLLMNRVDLSLLVITKGLTKTGEDY--AVKAAHVELAERMRKRDAATAP 921
Query: 1209 SAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
+ GD VPY+I ++ G R D + D ID YY QI + R+
Sbjct: 922 TVGDRVPYVII-------KAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRI 974
Query: 1269 CASI-EGTSPERL 1280
I + S E L
Sbjct: 975 FEPILKNASRELL 987
Score = 209 (78.6 bits), Expect = 7.1e-20, Sum P(3) = 7.1e-20
Identities = 55/157 (35%), Positives = 84/157 (53%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG----LVPH----L 942
+ G VLE + G Y+K I LDF SLYPSI+ YN+C+ T+ D L P
Sbjct: 587 FEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKT 646
Query: 943 PSSKT-------TGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSM 994
PS +T G+LPE+L+ L+ R+ K +K A + LD +Q ALK++ANS+
Sbjct: 647 PSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSV 706
Query: 995 YGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQN 1031
YG G + + ++ +T GR+++ T LV++
Sbjct: 707 YGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVED 743
Score = 129 (50.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 51/215 (23%), Positives = 100/215 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
G +V+ ++ ER +L + ++D D+++G+NI FDL L+ RA+V ++ + +
Sbjct: 369 GVDVMSFDT-ERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIVE--FPIL 425
Query: 690 GRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
GR++ S ++R T F S G + GR+ D + + SYSL ++
Sbjct: 426 GRIRNS---RVRVRDTTFSSRQYGMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVS 482
Query: 747 KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
L + +++V H ++ Q E+ L Y DA+L L+ L + ++
Sbjct: 483 AHFLGEQKEDVH-HSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMAR 541
Query: 805 ISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPD 839
++G L ++ +V LL + K ++P+
Sbjct: 542 VTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPN 576
Score = 46 (21.3 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 10/70 (14%), Positives = 33/70 (47%)
Query: 496 FLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVT 555
F++ + G +W+ + A + +S+C+ E+ + ++ +H +++ P +
Sbjct: 259 FMIDCNIVGGNWIEVPAGKYMKAARIMSYCQLELDCLYSDLVSHAAEGEH-SKMAPFRIL 317
Query: 556 AINLKTVFNK 565
+ +++ K
Sbjct: 318 SFDIECAGRK 327
Score = 44 (20.5 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 757 VGPHDVLKMFQTLESLME 774
+GP D+ + QTLE M+
Sbjct: 163 MGPDDISRFHQTLEGRMK 180
Score = 37 (18.1 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 912 DF-NSLYPSIIQEYNIC 927
DF + P II YNIC
Sbjct: 387 DFIREVDPDIIIGYNIC 403
>UNIPROTKB|I3LGG7 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:CU207412 EMBL:FP339588
Ensembl:ENSSSCT00000027046 Uniprot:I3LGG7
Length = 313
Score = 331 (121.6 bits), Expect = 1.8e-28, P = 1.8e-28
Identities = 83/245 (33%), Positives = 133/245 (54%)
Query: 330 DDDGSLPFYILDAHEQLSGANMGTLYLFGKV--KAGSTHHSCCVVVKNMQRCVYAIPNGP 387
D + FY LDA+E + G ++LFGKV + TH SCCV+VKN++R +Y +P
Sbjct: 90 DGEQVFQFYWLDAYED-QYSQPGVVFLFGKVWIELAETHVSCCVMVKNIERTLYFLPR-- 146
Query: 388 LFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSNYIVSPVKRRY 447
+T K++ + + + +P+ ++DV +IA + + + PV++ Y
Sbjct: 147 --ET----KIDLNTGKEKGTPVT----MKDVYDEFDEKIAAKY---KIMKFKSKPVEKNY 193
Query: 448 AFGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSW 507
AF ++P Y L++ Y + P LP DLKGE F + GT++S+LELFL+ RK+KGP W
Sbjct: 194 AFEIPDVPEKSEY-LEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 252
Query: 508 LSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINLKTVFNKRQ 567
L + P +SWCK+E P + V K V PP+ V ++++KT+ N +
Sbjct: 253 LEVKNPQLLNQP--ISWCKFEAMALKPDLVNVI---KDVGP-PPLVVMSLSMKTMQNAKT 306
Query: 568 DVNEI 572
NE+
Sbjct: 307 HENEV 311
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 258 (95.9 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 92/361 (25%), Positives = 167/361 (46%)
Query: 933 RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
R+P G SK G+LPE+L++++ R+ K MK K + +Q ALK++A
Sbjct: 607 RTPSGQY-FATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISA 665
Query: 992 NSMYGCLGFSNSRFYAKPLAELITQQGREILRST---VDLVQNNLNLE--------VIYG 1040
NS+YG G + + +++ +T GR+++ T V+ + L+ VIYG
Sbjct: 666 NSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYG 725
Query: 1041 DTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ 1100
DTDS+M+ +EV+K + I L+
Sbjct: 726 DTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTP-PIKLEFEKVYSPYLLINKKRYAGLY 784
Query: 1101 FKDGMPYEVIERKGLDMVRRD-WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
F ++ ++ KGL+ VRRD L++K +G CL ++L ER + ++ ++
Sbjct: 785 FTKPDVHDKMDCKGLETVRRDNCPLVAKVLG-VCLEKLLIERDQQSALDFAKRTI----S 839
Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
D+ ++ + +I+K LTK + Y AK Q HV++A R+K+ + GD VPY+
Sbjct: 840 DLLCNKIDISLLIISKELTKSGDKY-QAK-QAHVELAARMKKRDAGSAPRLGDRVPYVF- 896
Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
++ +V +RA P + + + +D +Y + Q+ ++R+ I G E+
Sbjct: 897 ----VAAAKNVPAYERAEDPTFVLQNNIP--LDTKHYLTNQLAKPLARIFEPILGDRAEK 950
Query: 1280 L 1280
+
Sbjct: 951 I 951
Score = 213 (80.0 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 52/150 (34%), Positives = 85/150 (56%)
Query: 888 GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH----LP 943
G Y G V++P +G Y++ I LDF SLYPSI+ +N+C+TT+ +SP G+ P
Sbjct: 550 GEGYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTP 609
Query: 944 S-------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMY 995
S SK G+LPE+L++++ R+ K MK K + +Q ALK++ANS+Y
Sbjct: 610 SGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVY 669
Query: 996 GCLGFSNSRFYAKPLAELITQQGREILRST 1025
G G + + +++ +T GR+++ T
Sbjct: 670 GFTGATVGKLPCLEISQSVTAFGRKMIDMT 699
Score = 140 (54.3 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 54/215 (25%), Positives = 104/215 (48%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GSN++ C + E+ LL + + ++D D++ G+NI FDL +L RA+V +P S +
Sbjct: 335 GSNIIQCVN-EKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQV--SHL 391
Query: 690 GRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQL 745
GR K S + GS + I I GR++ D + RD LR SY+L +
Sbjct: 392 GRQKEKGSVVRDAAISSKQMGSRVNKSID--IHGRIIFDVLQVVLRDYKLR--SYTLNSV 447
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L++ +++V H+++ Q ++ L +Y DA+L + L+ L + ++
Sbjct: 448 SYQFLSEQKEDV-EHNIIPDLQRGDEQTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMA 506
Query: 804 NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
++G L + ++ ++L + + +P
Sbjct: 507 RVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFLP 541
Score = 72 (30.4 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 21/88 (23%), Positives = 43/88 (48%)
Query: 478 KGE-NFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSP 534
KG N +L ++ + + +FL K + G W+ I K ++ S C+ E+TV
Sbjct: 204 KGPVNVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPV- 262
Query: 535 KDIRVSSSSKHVAEVPPVTVTAINLKTV 562
K++ V S A + P+ +++++ +
Sbjct: 263 KNLIVHESDGEWAGIAPIRTLSLDIECI 290
Score = 42 (19.8 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 1354 PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
P +Y ++ R PE +E + N +K + D F M Y G
Sbjct: 609 PSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNG 656
Score = 41 (19.5 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 439 IVSPVKRRYAFGQAEIP 455
+V+ KRR GQA++P
Sbjct: 132 MVAAAKRRGGSGQAQLP 148
Score = 37 (18.1 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 27/104 (25%), Positives = 42/104 (40%)
Query: 302 GWKEVSGGNM-VLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV 360
GW E+ G +L + CQ EV ++P L HE G G +
Sbjct: 233 GWIEIPAGKCRILSNSEKSSRCQ---IEV----TVPVKNLIVHES-DGEWAG----IAPI 280
Query: 361 KAGSTHHSCCVVVKNMQRCVY--AIPNGPLFQTDEIMKLEKDAE 402
+ S C +R V+ AI + P+ Q ++K+E +AE
Sbjct: 281 RTLSLDIECIG-----RRGVFPEAIKD-PIIQIANLVKIEGEAE 318
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 258 (95.9 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 92/361 (25%), Positives = 167/361 (46%)
Query: 933 RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTA 991
R+P G SK G+LPE+L++++ R+ K MK K + +Q ALK++A
Sbjct: 607 RTPSGQY-FATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISA 665
Query: 992 NSMYGCLGFSNSRFYAKPLAELITQQGREILRST---VDLVQNNLNLE--------VIYG 1040
NS+YG G + + +++ +T GR+++ T V+ + L+ VIYG
Sbjct: 666 NSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYG 725
Query: 1041 DTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQ 1100
DTDS+M+ +EV+K + I L+
Sbjct: 726 DTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTP-PIKLEFEKVYSPYLLINKKRYAGLY 784
Query: 1101 FKDGMPYEVIERKGLDMVRRD-WSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQE 1159
F ++ ++ KGL+ VRRD L++K +G CL ++L ER + ++ ++
Sbjct: 785 FTKPDVHDKMDCKGLETVRRDNCPLVAKVLG-VCLEKLLIERDQQSALDFAKRTI----S 839
Query: 1160 DMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC 1219
D+ ++ + +I+K LTK + Y AK Q HV++A R+K+ + GD VPY+
Sbjct: 840 DLLCNKIDISLLIISKELTKSGDKY-QAK-QAHVELAARMKKRDAGSAPRLGDRVPYVF- 896
Query: 1220 CEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPER 1279
++ +V +RA P + + + +D +Y + Q+ ++R+ I G E+
Sbjct: 897 ----VAAAKNVPAYERAEDPTFVLQNNIP--LDTKHYLTNQLAKPLARIFEPILGDRAEK 950
Query: 1280 L 1280
+
Sbjct: 951 I 951
Score = 213 (80.0 bits), Expect = 1.5e-23, Sum P(4) = 1.5e-23
Identities = 52/150 (34%), Positives = 85/150 (56%)
Query: 888 GPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH----LP 943
G Y G V++P +G Y++ I LDF SLYPSI+ +N+C+TT+ +SP G+ P
Sbjct: 550 GEGYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTP 609
Query: 944 S-------SKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMY 995
S SK G+LPE+L++++ R+ K MK K + +Q ALK++ANS+Y
Sbjct: 610 SGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVY 669
Query: 996 GCLGFSNSRFYAKPLAELITQQGREILRST 1025
G G + + +++ +T GR+++ T
Sbjct: 670 GFTGATVGKLPCLEISQSVTAFGRKMIDMT 699
Score = 140 (54.3 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 54/215 (25%), Positives = 104/215 (48%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GSN++ C + E+ LL + + ++D D++ G+NI FDL +L RA+V +P S +
Sbjct: 335 GSNIIQCVN-EKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQV--SHL 391
Query: 690 GRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQL 745
GR K S + GS + I I GR++ D + RD LR SY+L +
Sbjct: 392 GRQKEKGSVVRDAAISSKQMGSRVNKSID--IHGRIIFDVLQVVLRDYKLR--SYTLNSV 447
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ L++ +++V H+++ Q ++ L +Y DA+L + L+ L + ++
Sbjct: 448 SYQFLSEQKEDV-EHNIIPDLQRGDEQTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMA 506
Query: 804 NISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
++G L + ++ ++L + + +P
Sbjct: 507 RVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFLP 541
Score = 72 (30.4 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 21/88 (23%), Positives = 43/88 (48%)
Query: 478 KGE-NFCSLLGTHSSALELFLVKRKVKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSP 534
KG N +L ++ + + +FL K + G W+ I K ++ S C+ E+TV
Sbjct: 204 KGPVNVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRCQIEVTVPV- 262
Query: 535 KDIRVSSSSKHVAEVPPVTVTAINLKTV 562
K++ V S A + P+ +++++ +
Sbjct: 263 KNLIVHESDGEWAGIAPIRTLSLDIECI 290
Score = 42 (19.8 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 1354 PETEYNFWRTLRCPKCPEEVEAGRISPGMIANQVKRQADGFVSMYYKG 1401
P +Y ++ R PE +E + N +K + D F M Y G
Sbjct: 609 PSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFKRMVYNG 656
Score = 41 (19.5 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 439 IVSPVKRRYAFGQAEIP 455
+V+ KRR GQA++P
Sbjct: 132 MVAAAKRRGGSGQAQLP 148
Score = 37 (18.1 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 27/104 (25%), Positives = 42/104 (40%)
Query: 302 GWKEVSGGNM-VLDEGKSGLNCQESEFEVDDDGSLPFYILDAHEQLSGANMGTLYLFGKV 360
GW E+ G +L + CQ EV ++P L HE G G +
Sbjct: 233 GWIEIPAGKCRILSNSEKSSRCQ---IEV----TVPVKNLIVHES-DGEWAG----IAPI 280
Query: 361 KAGSTHHSCCVVVKNMQRCVY--AIPNGPLFQTDEIMKLEKDAE 402
+ S C +R V+ AI + P+ Q ++K+E +AE
Sbjct: 281 RTLSLDIECIG-----RRGVFPEAIKD-PIIQIANLVKIEGEAE 318
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 240 (89.5 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
Identities = 63/178 (35%), Positives = 95/178 (53%)
Query: 883 RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-------ERSP 935
R +G + G VL+PKKG YDK I LDF SLYPSI+ +N+C++T+ +
Sbjct: 567 RSQGQGDKFEGAFVLQPKKGFYDKPIATLDFASLYPSIMMAHNLCYSTLISKNVAMSMNK 626
Query: 936 DG--LVPH----LPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALK 988
D L PH G+LP++LK+L+ R+ K + K L+ LD +Q ALK
Sbjct: 627 DDYTLTPHGDYFAKPHVRQGILPDILKDLLAARKKAKNELAKETDPLRKAVLDGRQLALK 686
Query: 989 LTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYG-DTDSI 1045
++ANS+YG G + ++ +T GR+++ +T D V N+ N Y D+D I
Sbjct: 687 ISANSVYGFTGAQVGQLPCLEISSSVTSFGRQMIEATRDFVLNHYNKANGYNYDSDVI 744
Score = 237 (88.5 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 78/285 (27%), Positives = 131/285 (45%)
Query: 909 LLLDFNSLYPSIIQEYNICFTTVERSPDGLVPH-----LPSSKTTGVLPELLKNLVQRRR 963
+++ N Y ++I + N+ + + + L PH P + G+LP++LK+L+ R+
Sbjct: 604 IMMAHNLCYSTLISK-NVAMS-MNKDDYTLTPHGDYFAKPHVRQ-GILPDILKDLLAARK 660
Query: 964 MVKTWM-KTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
K + K L+ LD +Q ALK++ANS+YG G + ++ +T GR+++
Sbjct: 661 KAKNELAKETDPLRKAVLDGRQLALKISANSVYGFTGAQVGQLPCLEISSSVTSFGRQMI 720
Query: 1023 RSTVDLVQNNLNL--------EVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKC 1074
+T D V N+ N +VIYGDTDS+M+ + ++KK
Sbjct: 721 EATRDFVLNHYNKANGYNYDSDVIYGDTDSVMVKFGCDSIEEAMKYGKEAAEMISKKLFI 780
Query: 1075 LEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
I L+ + Y+ I+ KG++ VRRD +E+ + CL
Sbjct: 781 NPIKLEFEKVYYPYLLISKKRYAGCFYTKPDKYDKIDTKGMENVRRDNCQFIREMMNTCL 840
Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
IL E + V SI + D+ +V + K VITK+LTK
Sbjct: 841 RYILVEHKQDGVQRSIQ-FIKGCISDLYQNKVDISKLVITKSLTK 884
Score = 118 (46.6 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
Identities = 42/184 (22%), Positives = 84/184 (45%)
Query: 631 SNVLCCESSERALLNRLMIE----LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
SN+ C L++E L +D D+ +G+NI+ FD +L R + ++ + +
Sbjct: 352 SNIPGCIVKSFKTETELLLEWEKFLQNVDPDIFLGYNITNFDFPYILERGKQLKINNGKY 411
Query: 687 SKIGRLKRSEMPKLRKGRTIFGS-GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQL 745
+GR+K + + +++ G+ + + G GR+ D + + SYSL +
Sbjct: 412 GFMGRIKNT-ITRIKDGKYLSKAMGMRDTKEMNFEGRIQLDMMMHMHRETKLSSYSLNSV 470
Query: 746 AKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLT 803
+ LN+ +++V H + Q E+ L Y DA L ++LM L + ++
Sbjct: 471 SYHFLNEQKEDVH-HTQISGLQKGDAETRKRLAVYCLKDAQLPLKLMQKLMCIYNYTEMA 529
Query: 804 NISG 807
++G
Sbjct: 530 RVTG 533
Score = 93 (37.8 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
Identities = 44/168 (26%), Positives = 73/168 (43%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES-IHNSLMKVQEDMRSGQ 1165
Y ++E K D V+R + G C+S + + D+ + I SL K D G+
Sbjct: 842 YILVEHKQ-DGVQRSIQFIK---G--CISDLYQNKV--DISKLVITKSLTKKSADDDEGE 893
Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRL-KQSGYSTGCSAGDTVPYIICCEQGT 1224
+K K P A Q HV++A ++ K+ S C GD +PY+I G
Sbjct: 894 EDGKKGSSHNNKAKEPSANQYKGKQAHVELAKKMAKRDPGSAPC-IGDRIPYVIVA--GA 950
Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
S + ++ P + + D +D DYY +QI ++R+ + I
Sbjct: 951 KSAKNY---EKVEDPIYVLENDIP--LDYDYYIEKQIKNPITRIYSHI 993
Score = 59 (25.8 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
Identities = 32/145 (22%), Positives = 63/145 (43%)
Query: 432 NLNVSNYI--VSPVK-RRYAFGQAEIPAGENYVLKINYPFKDPPLPADLKG--ENFCSLL 486
N+ +N+I + VK + + + A + Y LKI Y F P +PA L+G E ++
Sbjct: 167 NVKTTNFIRKIEVVKGESIKYYKGKDYAQDTY-LKI-YTFIPPFIPA-LRGMIEKGYTID 223
Query: 487 GTHSSALEL---------FLVKRKVKGPSWLSISK--FSSCPAPQRVSWCKYEITVDSPK 535
G A+ +++ + G W+ + K F + S C+ EI VD
Sbjct: 224 GIRFPAVTFESNIPFALRYMIDADIVGMGWIKLDKEKFKIRSLDKHKSRCQIEIDVDCQN 283
Query: 536 DIRVSSSSKHVAEVPPVTVTAINLK 560
+ + A++ P+ + + +++
Sbjct: 284 VHGMDAQDPQWADIAPLRIFSFDIE 308
Score = 41 (19.5 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 109 DGQRSIKKQR-IEKRGKKENNQNVRKP 134
DG + KQ+ ++ KKE+ + R+P
Sbjct: 85 DGDQGDDKQKQAQESNKKEDENSEREP 111
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 290 (107.1 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 101/384 (26%), Positives = 174/384 (45%)
Query: 909 LLLDFNSLYPSIIQEYNICFTTVERSPDGLV--P----HLPSSKTTGVLPELLKNLVQRR 962
+++ N Y +++Q+ I + PD + P + SS G+LPE+L+NL+ R
Sbjct: 614 IMMAHNLCYTTLLQKSQI--EKLGLGPDDFIKTPTGDLFVKSSVRKGLLPEILENLLSAR 671
Query: 963 RMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREI 1021
+ K +K + K Q LD +Q ALK++ANS+YG G + +++ +T GR++
Sbjct: 672 KRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQM 731
Query: 1022 LRSTVDLVQNNLNLE--------VIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYK 1073
+ T LV++ L+ VIYGDTDS+M+ + V+ +
Sbjct: 732 IEQTKQLVESRYTLDNGYQADAKVIYGDTDSVMVKLGVATVQEAMNQGKEAAEWVSSHF- 790
Query: 1074 CLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPY-EVIERKGLDMVRRDWSLLSKEVGDF 1132
I L+ F + + ++ KG++ VRRD L + +
Sbjct: 791 VPPIKLEFEKVYYPYLLINKKRYAGLYFSSSAEHHDKMDCKGIETVRRDNCPLVANLINT 850
Query: 1133 CLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPH 1192
CL IL +R + V H +V D+ ++ + + VITK LT+ + Y A Q H
Sbjct: 851 CLQNILIDRDPDGAVT--HAK--EVISDLLCNRIDISQLVITKELTRTAQEY--AGKQAH 904
Query: 1193 VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMID 1252
V++A R+++ + + GD VPY+I ++ G+A + D + + ID
Sbjct: 905 VELAERMRKRDAGSAPNLGDRVPYVII-------KAAKGVAAYMKSEDPIYVLENNIPID 957
Query: 1253 IDYYASQQIHPVVSRLCASIEGTS 1276
YY QQ+ + R+ I G S
Sbjct: 958 TQYYLEQQLSKPLLRIFEPILGES 981
Score = 246 (91.7 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 64/181 (35%), Positives = 101/181 (55%)
Query: 884 KGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER---S 934
K + G Y G V+EP+KG Y I LDF+SLYPSI+ +N+C+TT +E+
Sbjct: 578 KTEGGEDYTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLGLG 637
Query: 935 PDGLV--P----HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQAL 987
PD + P + SS G+LPE+L+NL+ R+ K +K + K Q LD +Q AL
Sbjct: 638 PDDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQLAL 697
Query: 988 KLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
K++ANS+YG G + +++ +T GR+++ T LV++ L+ Y D+ +I
Sbjct: 698 KISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLDNGY-QADAKVI 756
Query: 1048 H 1048
+
Sbjct: 757 Y 757
Score = 109 (43.4 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 53/217 (24%), Positives = 98/217 (45%)
Query: 627 SKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMW 686
S GS +LC + E+ +L + +D D++ G+NI FDL LL+RA +V +M+
Sbjct: 366 SIVGSQILCF-TQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNRAATLKV--NMF 422
Query: 687 SKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQ 744
+GR+ + G + GR+ D + RD LR SY+L
Sbjct: 423 PYLGRVWGCKSVLKDSSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLR--SYTLNA 480
Query: 745 LAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQL 802
++ L + +++V H ++ Q ++ L Y DA+L + L+ L + ++
Sbjct: 481 VSFHFLQEQKEDV-QHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEM 539
Query: 803 TNISG-NLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
++G L +G + + V LL A + + ++P
Sbjct: 540 ARVTGVPLTYLLSRGQQIKVVSQLLRQAMK-QDLVMP 575
Score = 42 (19.8 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 519 PQRVSWCKYEITVDSPKDIRVSSSSK-HVAEVPPVTVTAINLKTVFNK 565
P +VS C+YE VD D +S ++ + P+ V + +++ K
Sbjct: 282 PGKVSLCQYE--VDVAWDSLISHPAEGEWQRIAPLRVLSFDIECAGRK 327
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 248 (92.4 bits), Expect = 6.5e-26, Sum P(3) = 6.5e-26
Identities = 98/381 (25%), Positives = 173/381 (45%)
Query: 909 LLLDFNSLYPSIIQEYNICFTTVERSPDGLV-PH----LPSSKTTGVLPELLKNLVQRRR 963
+++ N Y ++ + + ++ + D ++ P+ + S K G+LP +L+ L+ R+
Sbjct: 611 IMMAHNLCYTTLCNKATVQRLQLKENEDYIITPNGDYFVTSKKRRGILPIILEELIAARQ 670
Query: 964 MVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREIL 1022
K +K + K L+ +Q ALK++ANS+YG G + + ++ +T GR ++
Sbjct: 671 RAKGELKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLSISSSVTAYGRTMI 730
Query: 1023 RSTVDLVQNNLNLE--------VIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKC 1074
+T V+ ++ V+YGDTDS+MI V+ +K
Sbjct: 731 ETTKRAVEEKYTIKNGYKHDAIVVYGDTDSVMIKFGTNELKQTMELGAEAAAYVSSLFKH 790
Query: 1075 LEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCL 1134
I+L+ + Y+ +++KGL VRRD L V + L
Sbjct: 791 -PINLEFEKVYFPYLLINKKRYAGLYWTKPEKYDKLDQKGLASVRRDSCPLVSIVMNKIL 849
Query: 1135 SQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQ 1194
IL ER+ ++ + N++ ED+ + + K +I+KTL P Y +A QPH
Sbjct: 850 RMILIERNVPGALKFVENTI----EDLLQNKADISKLIISKTLA--PN-YTNA--QPHAI 900
Query: 1195 VALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDID 1254
+A R+K+ G + GD V Y+I G + + RA +P L + +D
Sbjct: 901 LAERMKKRD-GVGPNVGDRVDYVII-------GGNDKLYNRAENP--LYVLEQNIQLDSK 950
Query: 1255 YYASQQI-HPVVSRLCASIEG 1274
YY + Q+ +PVVS + A I G
Sbjct: 951 YYLTTQLQNPVVS-IIAPIIG 970
Score = 141 (54.7 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT------VER-----SPDGLV 939
Y G V+EP +G YD I LDFNSLYPSI+ +N+C+TT V+R + D ++
Sbjct: 582 YQGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQLKENEDYII 641
Query: 940 -PH----LPSSKTTGVLPELLKNLVQRRRMVKTWMK 970
P+ + S K G+LP +L+ L+ R+ K +K
Sbjct: 642 TPNGDYFVTSKKRRGILPIILEELIAARQRAKGELK 677
Score = 134 (52.2 bits), Expect = 6.5e-26, Sum P(3) = 6.5e-26
Identities = 52/183 (28%), Positives = 86/183 (46%)
Query: 630 GSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKI 689
GS + E+ E A+L L ++D DV++G+N + FDL L++RA V S +
Sbjct: 365 GSQIFEHETEE-AMLKHWRDFLVEVDPDVIIGYNTTNFDLPYLINRAAALNVSSFPY--F 421
Query: 690 GRLKRSEMPKLRKGRTIFGS---GASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLA 746
GRL S+ ++ K T+F S G I GRL D F R + SY+L ++
Sbjct: 422 GRLVNSK--QVIK-ETVFSSKAHGTRESKSINIEGRLQLDIFQFVRREYQLRSYTLNSVS 478
Query: 747 KTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTN 804
L + +++V H ++ E+ L Y DA+L + L+ L L ++
Sbjct: 479 AHFLGEQKEDVH-HSIIASLHRGDSETRRRLAVYCLKDAYLPLRLLEKLMALVNYTEMAR 537
Query: 805 ISG 807
++G
Sbjct: 538 VTG 540
Score = 59 (25.8 bits), Expect = 6.5e-26, Sum P(3) = 6.5e-26
Identities = 11/61 (18%), Positives = 34/61 (55%)
Query: 502 VKGPSWLSI--SKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVPPVTVTAINL 559
+ G SW+++ K++ P +++S C+ E++++ KD+ + + P+ + + ++
Sbjct: 259 IVGMSWITLPKGKYAMIPKNKKISTCQLEVSINY-KDLISRPADSDWSHSAPLRILSFDI 317
Query: 560 K 560
+
Sbjct: 318 E 318
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 167 (63.8 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 46/150 (30%), Positives = 79/150 (52%)
Query: 907 YILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK 966
Y LLD N+ +++ ++ ++ + PH+ G+LP +L +L+ R+ K
Sbjct: 603 YTTLLDSNTAELLKLKQ-DVDYSVTPNGDYFVKPHVRK----GLLPIILADLLNARKKAK 657
Query: 967 TWMKTASG-LKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILRST 1025
+K + K LD +Q ALK++ANS+YG G +N R ++ +T GR+++ T
Sbjct: 658 ADLKKETDPFKKAVLDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKT 717
Query: 1026 VDLVQNNLNLE--------VIYGDTDSIMI 1047
D+V+ +E VIYGDTDS+M+
Sbjct: 718 KDVVEKRYRIENGYSHDAVVIYGDTDSVMV 747
Score = 132 (51.5 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
Y G V+EP KG YD I LDF+SLYPSI+Q +N+C+TT+
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTL 606
Score = 122 (48.0 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 54/185 (29%), Positives = 87/185 (47%)
Query: 654 LDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGS---G 710
+D DVL+G+NI FD+ LL RA+ R+ + + +GR+ + K T F S G
Sbjct: 372 VDPDVLIGYNICNFDIPYLLDRAKSLRIHN--FPLLGRIHN--FFSVAK-ETTFSSKAYG 426
Query: 711 ASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ- 767
+ I GRL D + RD LR SYSL + L + +++V + ++ Q
Sbjct: 427 TRESKTTSIPGRLQLDMLQVMQRDFKLR--SYSLNAVCSQFLGEQKEDVH-YSIITDLQN 483
Query: 768 -TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLL 826
T +S L Y DA+L LM L ++ ++G + L AR Q+++ ++
Sbjct: 484 GTADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLL--ARGQQIK-VI 540
Query: 827 LHAFR 831
FR
Sbjct: 541 SQLFR 545
Score = 121 (47.7 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 48/174 (27%), Positives = 79/174 (45%)
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
Y+ ++ KG++ VRRD L V D L ++L ++ VE KV D+ ++
Sbjct: 806 YDKMDSKGIETVRRDNCPLVSYVIDTALRKMLIDQD----VEGAQLFTKKVISDLLQNKI 861
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
+ + VITK L+K A AK HV++A R+++ + + GD V Y+I +G +
Sbjct: 862 DMSQLVITKALSKTDYA---AK-MAHVELAERMRKRDAGSAPAIGDRVAYVII--KG-AQ 914
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERL 1280
G + R D + + ID YY Q+ + R+ I G L
Sbjct: 915 GDQFYM----RSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILGEKASSL 964
Score = 42 (19.8 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 30/134 (22%), Positives = 55/134 (41%)
Query: 380 VYAIPNGPLFQT--DEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNLNVSN 437
+Y + + L Q D++M E +R++ + F L A G + ++ +QL + +
Sbjct: 494 IYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLL---ARGQQIKVISQLFRKALQH 550
Query: 438 YIVSPVKRRYAFGQAEIPAGENYVLKINYPFKDPPL---------PADLKGENFCSLLGT 488
+V P R G E G + I + D P+ P+ ++ N C
Sbjct: 551 DLVVPNIR--VNGTDEQYEGATVIEPIK-GYYDTPIATLDFSSLYPSIMQAHNLCYTTLL 607
Query: 489 HSSALELFLVKRKV 502
S+ EL +K+ V
Sbjct: 608 DSNTAELLKLKQDV 621
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 236 (88.1 bits), Expect = 2.9e-22, Sum P(5) = 2.9e-22
Identities = 90/338 (26%), Positives = 148/338 (43%)
Query: 941 HLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTANSMYGCL 998
H S T G+LP +L+ L+ R+ K +K K LD +Q ALK++ANS+YG
Sbjct: 649 HFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAVLDGRQLALKISANSVYGFT 708
Query: 999 GFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLE--------VIYGDTDSIMIHSX 1050
G + ++ +T GRE+L T +V+ + +IYGDTDS+M+
Sbjct: 709 GARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTDSVMVKFG 768
Query: 1051 XXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVI 1110
+ V + I+LD + ++ +
Sbjct: 769 VKTVAEAMEMGRDAAKFVTTTF-IRPINLDFEKVYYPYLLMAKKKYAGLYWTKPDIHDRM 827
Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
+ KGL+MVRRD LL + V L +IL E+ ++S V D+ ++ L
Sbjct: 828 DVKGLEMVRRDTCLLVRNVVSTILKKILIEKD----LKSAEEYTKSVISDLLQNRLDLSM 883
Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
VITK L+K Y H ++A +++ +T + GD VPY++ QG S G+
Sbjct: 884 LVITKALSKTQ--YKG--KVIHNELARKMRARDPATAPNLGDRVPYVVI--QG-SKGAP- 935
Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
I ++A P L + ++D YY +Q+ + R+
Sbjct: 936 -IYEKAEDP--LYALEHNILLDCQYYLDKQLKAPLIRI 970
Score = 214 (80.4 bits), Expect = 6.2e-20, Sum P(5) = 6.2e-20
Identities = 57/176 (32%), Positives = 91/176 (51%)
Query: 887 RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDG--LVP---- 940
+G + G +V+EP G YD I LDF SLYPSI+ +N+C++T+ + + L P
Sbjct: 583 KGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLPPEIYT 642
Query: 941 ------HLPSSKTT-GVLPELLKNLVQRRRMVKTWMKTASG-LKIQQLDIQQQALKLTAN 992
H S T G+LP +L+ L+ R+ K +K K LD +Q ALK++AN
Sbjct: 643 TTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAVLDGRQLALKISAN 702
Query: 993 SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
S+YG G + ++ +T GRE+L T +V+ + Y D+++I+
Sbjct: 703 SVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKH-DAVIIY 757
Score = 126 (49.4 bits), Expect = 2.9e-22, Sum P(5) = 2.9e-22
Identities = 50/186 (26%), Positives = 88/186 (47%)
Query: 626 NSKAGSNVLCCESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSM 685
+S G++V+ E LL + K+D DV++G+NI FD+ L+ RA+ ++P
Sbjct: 366 SSIVGAHVIP-HKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPE-- 422
Query: 686 WSKIGRLKR--SEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLT 743
++ +GR+K S++ R + G+ S I + GR D + + SYSL
Sbjct: 423 FALLGRIKTTISKIKSTRFSSSNLGTRESKEIS--MPGRTQFDLMQAIQRDHKLTSYSLN 480
Query: 744 QLAKTQLNKDRKEVGPHDVLKMFQ--TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQ 801
++ L K++KE ++ Q T + L Y DA L M L+ L +L +
Sbjct: 481 NVSAHFL-KEQKEDVHFSIISDLQNGTDDDRRRLAVYCIKDAVLPMRLLDKLMILINYTE 539
Query: 802 LTNISG 807
+ ++G
Sbjct: 540 MARVTG 545
Score = 49 (22.3 bits), Expect = 2.9e-22, Sum P(5) = 2.9e-22
Identities = 44/207 (21%), Positives = 88/207 (42%)
Query: 346 LSGANMGTL---YLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAE 402
+ G +G L LFG K G++ C V + + P G F + L+ D
Sbjct: 119 MPGPKVGPLPAIRLFGVTKEGNS--VLCKVHGFLPYFFISCPPG--FTEADCKSLKHDLN 174
Query: 403 ESR--ISPMAFRKKLQDVALGLKTEIANQLLNLN---VSNYI-VSPVKRRYAFGQAEI-P 455
ES S + K ++++ + + E ++ N +S++I ++ + ++ EI
Sbjct: 175 ESMKMSSNQSNEKDIENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPKFVTRCREIFE 234
Query: 456 AGENYVLKINYPFKDPPLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSS 515
+G ++ PF+ + + + S + AL FL+ + + G SW+ + +
Sbjct: 235 SGRHHFTIPGQPFR--------QYQTYESNI---LFALR-FLIDKGITGCSWIELPANTY 282
Query: 516 CPAPQRVSWCKYEITVDSPKDIRVSSS 542
+ VS C+ E VD+ + +S S
Sbjct: 283 KLSETPVSTCQIE--VDTSLETIISLS 307
Score = 46 (21.3 bits), Expect = 2.9e-22, Sum P(5) = 2.9e-22
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 79 DDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQ 111
+D+G +G+E E+D V + +SD +D Q
Sbjct: 44 EDEGDEFGEEEDEDDIDVENI-IASDSMDIDIQ 75
Score = 39 (18.8 bits), Expect = 2.9e-22, Sum P(5) = 2.9e-22
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 1327 CPSCSSTFDCPAVCSS 1342
C CS + P +CS+
Sbjct: 1059 CQRCSGSLHQPVLCSN 1074
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 234 (87.4 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 80/301 (26%), Positives = 143/301 (47%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTAN 992
+P+G + P + G+L ++L+ L+ R+ K + + K L+ +Q ALK++AN
Sbjct: 634 TPNGDMFCTPKVRK-GLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVSAN 692
Query: 993 SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDS 1044
S+YG G + + +A T GR+++ T V+ + +VIYGDTDS
Sbjct: 693 SVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDTDS 752
Query: 1045 IMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 1104
+M+ + V+ K+ I L+ + +
Sbjct: 753 VMVKFGVTELEEAMKLGQEASEYVSSKF-IKPIKLEFEKVYFPYLLINKKRYAGLYWTNP 811
Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
Y+ ++ KG++ VRRD LL + V + L +IL +R E E + +++ D+
Sbjct: 812 KKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTI----SDLLQN 867
Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
++ + K VITK LTK ++Y AK Q HV++A R+++ + + GD V Y+I +GT
Sbjct: 868 KIDMSKLVITKALTK--DSYT-AK-QAHVELAERMRKRDAGSAPTLGDRVAYVIV--KGT 921
Query: 1225 S 1225
+
Sbjct: 922 A 922
Score = 178 (67.7 bits), Expect = 2.9e-16, Sum P(3) = 2.9e-16
Identities = 51/155 (32%), Positives = 82/155 (52%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---------ERSPDGLV-P 940
Y G V+EP + YD I LDF SLYPSIIQ +N+C+TT+ ++ D +V P
Sbjct: 576 YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDYIVTP 635
Query: 941 H---LPSSKTT-GVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMY 995
+ + K G+L ++L+ L+ R+ K + + K L+ +Q ALK++ANS+Y
Sbjct: 636 NGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVSANSVY 695
Query: 996 GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
G G + + +A T GR+++ T V+
Sbjct: 696 GLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVE 730
Score = 127 (49.8 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 51/195 (26%), Positives = 94/195 (48%)
Query: 651 LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
+ K+D DV++G+NI+ FD LL RA+ + + W+++ + RSE G+
Sbjct: 380 IQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRLNGM-RSEAKDTNFSSKQMGN 438
Query: 710 GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
+ + GRL D L RD LR SY+L ++ L + +++V + +++
Sbjct: 439 RDTKATNT--NGRLQLDLLQLVQRDHNLR--SYTLNSVSYEFLGEQKEDVHHTMITELYN 494
Query: 768 -TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL- 825
T +S L Y DA+L LM L L ++ ++G + L +R Q+V++L
Sbjct: 495 GTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFLS 552
Query: 826 -LLHAFRAKKYIVPD 839
L ++ ++P+
Sbjct: 553 QLYRKALQQQLVIPN 567
Score = 44 (20.5 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 1327 CPSCSSTFDCPAVCSS 1342
C C + C +CSS
Sbjct: 996 CQRCQGSLHCEVICSS 1011
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 234 (87.4 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 80/301 (26%), Positives = 143/301 (47%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTAN 992
+P+G + P + G+L ++L+ L+ R+ K + + K L+ +Q ALK++AN
Sbjct: 634 TPNGDMFCTPKVRK-GLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVSAN 692
Query: 993 SMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNL--------EVIYGDTDS 1044
S+YG G + + +A T GR+++ T V+ + +VIYGDTDS
Sbjct: 693 SVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDTDS 752
Query: 1045 IMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 1104
+M+ + V+ K+ I L+ + +
Sbjct: 753 VMVKFGVTELEEAMKLGQEASEYVSSKF-IKPIKLEFEKVYFPYLLINKKRYAGLYWTNP 811
Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
Y+ ++ KG++ VRRD LL + V + L +IL +R E E + +++ D+
Sbjct: 812 KKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTI----SDLLQN 867
Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
++ + K VITK LTK ++Y AK Q HV++A R+++ + + GD V Y+I +GT
Sbjct: 868 KIDMSKLVITKALTK--DSYT-AK-QAHVELAERMRKRDAGSAPTLGDRVAYVIV--KGT 921
Query: 1225 S 1225
+
Sbjct: 922 A 922
Score = 178 (67.7 bits), Expect = 2.9e-16, Sum P(3) = 2.9e-16
Identities = 51/155 (32%), Positives = 82/155 (52%)
Query: 891 YAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV---------ERSPDGLV-P 940
Y G V+EP + YD I LDF SLYPSIIQ +N+C+TT+ ++ D +V P
Sbjct: 576 YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDYIVTP 635
Query: 941 H---LPSSKTT-GVLPELLKNLVQRRRMVKTWM-KTASGLKIQQLDIQQQALKLTANSMY 995
+ + K G+L ++L+ L+ R+ K + + K L+ +Q ALK++ANS+Y
Sbjct: 636 NGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVSANSVY 695
Query: 996 GCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQ 1030
G G + + +A T GR+++ T V+
Sbjct: 696 GLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVE 730
Score = 127 (49.8 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 51/195 (26%), Positives = 94/195 (48%)
Query: 651 LYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPS-SMWSKIGRLKRSEMPKLRKGRTIFGS 709
+ K+D DV++G+NI+ FD LL RA+ + + W+++ + RSE G+
Sbjct: 380 IQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRLNGM-RSEAKDTNFSSKQMGN 438
Query: 710 GASPGIMSCIAGRLLCDTF-LCSRDL-LREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQ 767
+ + GRL D L RD LR SY+L ++ L + +++V + +++
Sbjct: 439 RDTKATNT--NGRLQLDLLQLVQRDHNLR--SYTLNSVSYEFLGEQKEDVHHTMITELYN 494
Query: 768 -TLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYL- 825
T +S L Y DA+L LM L L ++ ++G + L +R Q+V++L
Sbjct: 495 GTPDSRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLL--SRGQQVKFLS 552
Query: 826 -LLHAFRAKKYIVPD 839
L ++ ++P+
Sbjct: 553 QLYRKALQQQLVIPN 567
Score = 44 (20.5 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 1327 CPSCSSTFDCPAVCSS 1342
C C + C +CSS
Sbjct: 996 CQRCQGSLHCEVICSS 1011
>TIGR_CMR|SO_1820 [details] [associations]
symbol:SO_1820 "DNA polymerase II" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR SUPFAM:SSF53098
GO:GO:0003887 HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 RefSeq:NP_717428.1 ProteinModelPortal:Q8EFZ4
GeneID:1169593 KEGG:son:SO_1820 PATRIC:23523263 Uniprot:Q8EFZ4
Length = 808
Score = 187 (70.9 bits), Expect = 4.0e-19, Sum P(4) = 4.0e-19
Identities = 55/160 (34%), Positives = 84/160 (52%)
Query: 893 GGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFT-TVER-SPDGLVPHLPSSKT-TG 949
GG V++ G Y ++IL+ DF SLYPSII+ + I +E D LV L S+T TG
Sbjct: 423 GGYVMDSVPGFY-QHILVFDFKSLYPSIIRTFLIDPKGLIEGLGDDSLV--LDESETVTG 479
Query: 950 VL-PELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAK 1008
L + ++++T + K + QA+K+ NS+YG LG F+
Sbjct: 480 FLGARFSRRQPILPKLIQTLSEQREKAKREANAPLSQAIKIIMNSLYGVLGSQGCVFHDA 539
Query: 1009 PLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH 1048
LA IT +G +I++ T ++ + +VIYGDTDS +H
Sbjct: 540 KLASSITMRGHQIMKQTRAWIEE-MGYQVIYGDTDSTFVH 578
Score = 96 (38.9 bits), Expect = 4.0e-19, Sum P(4) = 4.0e-19
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYV 1172
KG++ VR DWS L+++V ++ ++R + + L + D ++ +
Sbjct: 660 KGMEQVRSDWSPLARKVQAELYERMFNQRDISGYLADVIGELQAGKRD--------DELI 711
Query: 1173 ITKTLTKPPEAYPDAKNQPHVQVALRLKQ-SGYSTGCSAGDTVPYII 1218
+K + + E Y AK+ PHV+VA +L + +G ++ G + Y+I
Sbjct: 712 FSKRMRRNLEEYT-AKSSPHVKVARQLCELTGKASYSKRGAQIDYVI 757
Score = 94 (38.1 bits), Expect = 4.0e-19, Sum P(4) = 4.0e-19
Identities = 52/208 (25%), Positives = 89/208 (42%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
S E L+ RL+ + D DV++G ++ FDL +L RA + R+P + + G L ++
Sbjct: 222 SDEAMLIRRLIAWFAEFDPDVIIGWSVVTFDLALLYRRALLHRIPLRL-GRGGALLEWKV 280
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS-YSLTQLAKTQLNKDRKE 756
K R P ++ + GR++ D + +SL +A+ L + K
Sbjct: 281 DN--KFR--------PETLN-LPGRVVLDGIDWLKAAFYHFERFSLEFVAQALLGEG-KA 328
Query: 757 VGPHDVLKMFQTLESLM-----ELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWG 811
+ HDV Q +++L L Y TD+ L ++ H + ++G G
Sbjct: 329 I--HDVENRVQEIDALFTEDKQSLAHYNLTDSRLVWDIFEHTQLWDFALARAELTGLELG 386
Query: 812 KTLQGARAQRVEYLLL-HAFRAKKYIVP 838
+ GA +L L H RA Y+ P
Sbjct: 387 RV--GASVAAFNHLYLPHLHRAG-YVAP 411
Score = 40 (19.1 bits), Expect = 4.0e-19, Sum P(4) = 4.0e-19
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1251 IDIDYYASQQIHPV 1264
ID YY +QI P+
Sbjct: 772 IDYQYYIDKQIGPI 785
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 203 (76.5 bits), Expect = 4.7e-19, Sum P(4) = 4.7e-19
Identities = 76/344 (22%), Positives = 148/344 (43%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASG----LKIQQLDIQQQALKL 989
+P+G+V + +S L ++L +++ R M+K M LK + L+ +Q ALKL
Sbjct: 1030 APNGVV-YAKTSVRKSTLSKMLTDILDVRVMIKKTMNEIGDDNTTLK-RLLNNKQLALKL 1087
Query: 990 TANSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLVQNN--LNLEVIYGDTDSIM 1046
AN YG S S R LA+ I Q GRE L +D+++ + N +V+YGDTDS+
Sbjct: 1088 LANVTYGYTSASFSGRMPCSDLADSIVQTGRETLEKAIDIIEKDETWNAKVVYGDTDSLF 1147
Query: 1047 IHSXXXXXXXXXXXXXXVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGM 1105
++ + + V + K + + + +
Sbjct: 1148 VYLPGKTAIEAFSIGHAMAERVTQNNPKPIFLKFEKVYHPSILISKKRYVGFSYE-SPSQ 1206
Query: 1106 PYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQ 1165
+ + KG++ VRRD +++ + C+ + + + + + N K+Q G+
Sbjct: 1207 TLPIFDAKGIETVRRDGIPAQQKIIEKCIRLLFQTKDLSKIKKYLQNEFFKIQ----IGK 1262
Query: 1166 VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLK-QSGYSTGCSAGDTVPYIICCEQGT 1224
V+ + + K + AY K P V ++ + + + +PY++ +G
Sbjct: 1263 VSAQDFCFAKEVKLG--AYKSEKTAPAGAVVVKRRINEDHRAEPQYKERIPYLVV--KG- 1317
Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
G + +R P+E +G+ +D +YY ++ + P + RL
Sbjct: 1318 KQGQL--LRERCVSPEEFLEGENL-ELDSEYYINKILIPPLDRL 1358
Score = 104 (41.7 bits), Expect = 4.7e-19, Sum P(4) = 4.7e-19
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
LV+EP+ Y +++LDF SLYPSI+ YN C++T+
Sbjct: 958 LVMEPESAFYKSPLIVLDFQSLYPSIMIGYNYCYSTM 994
Score = 73 (30.8 bits), Expect = 4.7e-19, Sum P(4) = 4.7e-19
Identities = 41/202 (20%), Positives = 79/202 (39%)
Query: 639 SERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP 698
SE + L + LD D+L G I F ++ R Q + ++ R+K
Sbjct: 744 SEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIH-QFDIVRELARVKCQIKT 802
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
KL +G S GIM I GR + + + R + Y++ A L+K
Sbjct: 803 KLSD---TWGYAHSSGIM--ITGRHMINIWRALRSDVNLTQYTIESAAFNILHKRLPHFS 857
Query: 759 PHDVLKMFQTLESLMEL---IEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQ 815
+ M+ +S EL + Y + A ++++L+ + + + G +
Sbjct: 858 FESLTNMWNAKKSTTELKTVLNYWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYY 917
Query: 816 GARAQRVEYLLLHAFRAKKYIV 837
+VE L+ +++ +I+
Sbjct: 918 RGSQFKVESFLIRICKSESFIL 939
Score = 49 (22.3 bits), Expect = 4.7e-19, Sum P(4) = 4.7e-19
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 216 VTNSTNSVKENSDLIN-NFVQIQNCDVVEESKELK 249
+ N++ K+N D +N +F + + C V E++ +K
Sbjct: 402 INNNSMQDKKNDDQVNASFTEYEICGVDNENEGVK 436
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 185 (70.2 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 83/348 (23%), Positives = 152/348 (43%)
Query: 934 SPDGLV---PHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK-IQQL-DIQQQALK 988
+P+G++ PH+ S +L ++L +++ R MVK+ MK + IQQL + +Q ALK
Sbjct: 1293 APNGMMYTKPHIRKS----LLAKMLTEILETRIMVKSGMKQDKDDRAIQQLLNNRQLALK 1348
Query: 989 LTANSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLVQN--NLNLEVIYGDTDSI 1045
L AN YG S S R +A+ I Q GRE L + + + + +V+YGDTDS+
Sbjct: 1349 LLANVTYGYTSASFSGRMPCSEIADSIVQTGRETLERAIAFIHSVQKWDADVVYGDTDSL 1408
Query: 1046 MIHSXXXXXXXXXXXXXXVIQEVNK-KYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 1104
+ + V K + +++ + + +D
Sbjct: 1409 FVSLKGRTREQAFEIGQEIADAVTKLNPRPVKLKFEKVYHPCVLLAKKRYVGYKYESRD- 1467
Query: 1105 MPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSG 1164
V + KG++ VRRD + + + + L +IL E + V+S + + MR G
Sbjct: 1468 QTVPVFDAKGIETVRRDGTPAEQRIEEKAL-KILFETADLSQVKSYFQE--QCHKIMR-G 1523
Query: 1165 QVALEKYVITKTLTKPPEAYPDAKNQPHVQVAL----RLKQSGYSTGCSAGDTVPYIICC 1220
V+++ + + + K + P AL ++K+ + G+ VPY++
Sbjct: 1524 AVSVQDFCFAREV-KLGTYSTSGRGGPAPAGALIATKKMKEDARAEP-QYGERVPYVVM- 1580
Query: 1221 EQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
+ + + R P+EL + +D DYY ++ I P + R+
Sbjct: 1581 ----AGAPGMRLVDRCVEPEELLN-NAHATLDADYYINKNIIPPLERI 1623
Score = 106 (42.4 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
LV+EP+ Y +L+LDF SLYPS++ YN C++T
Sbjct: 1222 LVMEPQSAFYSSPLLVLDFQSLYPSVMIAYNYCYST 1257
Score = 91 (37.1 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 42/231 (18%), Positives = 101/231 (43%)
Query: 612 GIFPMGFNKEATDRNSKAGSNVLCCESSERALLNRLMIELYKL-DSDVLVGHNISGFDLD 670
GI + DR K S + E++E ++ R M+E+ + D D+ G+ + G
Sbjct: 979 GIIVFSEDSLLADRIRKHTSVPVVQETTELDMMVR-MVEIVRNHDPDIFTGYEVHGSSWG 1037
Query: 671 VLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLC 730
L+ RA++ + + + R+K ++ K +G + I I GR + + +
Sbjct: 1038 YLIERARI-KYELDLCDEFSRMKSQSNGRIGKDADRWGFNTTSSIR--ITGRHMINIWRA 1094
Query: 731 SRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSME 788
R L + Y++ + L++ + + + + L +++ Y T L +E
Sbjct: 1095 MRGELNLLQYTMENVVWHLLHRRIPHYSWKTLSDWYLSDRPKDLDKVLRYYLTRTRLDIE 1154
Query: 789 LMFHLSVLPLTRQLTNISG-NLWGKTLQGARAQRVEYLLLHAFRAKKYIVP 838
++ ++P T + + G + + +G++ +VE ++ + + +++P
Sbjct: 1155 ILEKNELIPRTSEQARLLGVDFFSVFSRGSQF-KVESIMFRIAKPENFLLP 1204
Score = 37 (18.1 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 867 TNEDANFDNDTSHNDHRKGKRGP 889
T D FD D + RK + P
Sbjct: 19 TRYDPQFDQDVRFSRSRKAAKVP 41
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 155 (59.6 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 41/121 (33%), Positives = 68/121 (56%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTA---SGLKIQQLDIQQQALKLT 990
SP+G V ++ GVLP +L+ ++ R M+K MK + ++ L+ +Q LK+
Sbjct: 292 SPNG-VAYVSPQVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVLLRVLNARQFGLKMI 350
Query: 991 ANSMYG--CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN--LNLEVIYGDTDSIM 1046
AN YG GFS +A+ LA+ I Q GR+ L + + +V+++ V+YGDTDS+
Sbjct: 351 ANVSYGYTAAGFSGRMPFAE-LADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMF 409
Query: 1047 I 1047
+
Sbjct: 410 V 410
Score = 104 (41.7 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 863 VEELTNEDANFDNDTSHNDHRKGKRG-PAY-AGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
VE L A+ +N R+ G PA A LV+EP+ +Y +++LDF SLYPS
Sbjct: 183 VESLLVRLAHTNNYIMPTPSREQVGGQPAMEALPLVMEPESRMYASPVVVLDFQSLYPSQ 242
Query: 921 IQEYNICFTTVERSP 935
+ YN+C++T P
Sbjct: 243 VIAYNLCYSTCVGRP 257
Score = 78 (32.5 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 44/201 (21%), Positives = 73/201 (36%)
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPK 699
E +LL L LD DV+ G ++ L L RA + + GR + K
Sbjct: 2 EPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGTSSVK 61
Query: 700 LRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGP 759
R+ +G+ + G + GR+L + + R L+ SY+ A L V
Sbjct: 62 ERQNDE-WGALHASGFH--VTGRVLLNLWRVLRGELKLGSYTFESCAAAVLGLRVPRVRE 118
Query: 760 HDVLKMFQTLESL--MELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
+ F S + + L + + L ++ T ++ G + L
Sbjct: 119 QQLALWFAAGPSAGRWRTLSWLCRRCRLQLAMAEQLDLVGRTAEMARTFGIDFFSVLSRG 178
Query: 818 RAQRVEYLLLHAFRAKKYIVP 838
RVE LL+ YI+P
Sbjct: 179 SQYRVESLLVRLAHTNNYIMP 199
Score = 73 (30.8 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 31/163 (19%), Positives = 65/163 (39%)
Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
+ KG++ VRRD ++ + + + + V + K+ S +V+++
Sbjct: 474 DAKGIETVRRDSCPAVAKLLEQSIRLLFGSKDLSGVKSYLQRQWTKIL----SNRVSVQD 529
Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIIC-CEQGTSSGSS 1229
++ K + + A P +VA R + + VPY++ E G
Sbjct: 530 FIFAKEVRLGTYSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGAR---- 585
Query: 1230 VGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+ A P L + G ++ YY ++QI P + R+ + +
Sbjct: 586 --LVDSAVSPWALVEAGGSLRLNGTYYITKQIIPALERVLSLV 626
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 187 (70.9 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 77/346 (22%), Positives = 145/346 (41%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLK-IQQL-DIQQQALKLTA 991
+P+G++ P + + +L ++L +++ R MVK+ MK K +QQL + +Q ALKL A
Sbjct: 1231 APNGVMYTKPEIRKS-LLAKMLTEILETRVMVKSGMKQDKDDKTLQQLLNNRQLALKLLA 1289
Query: 992 NSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLVQN--NLNLEVIYGDTDSIMIH 1048
N YG S S R +A+ I Q GRE L + + + EV+YGDTDS+ IH
Sbjct: 1290 NVTYGYTSASFSGRLPCSEIADSIVQTGRETLERAIAFIHSVPRWGAEVVYGDTDSLFIH 1349
Query: 1049 SXXXXXXXXXXXXXXVIQEV-NKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPY 1107
+ + + + + +++ + + D
Sbjct: 1350 LKGRTKEQAFEIGNEMAKAITDMNPRPMKLKFEKVYLPCVLLAKKRYVGYKYEHVDQQVP 1409
Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
+ + KG++ VRRD + +++ + L + + E K+ MR GQV+
Sbjct: 1410 D-FDAKGIETVRRDGTPAEQKIEEKALRLLFETADLSQIKEYFQRQCNKI---MR-GQVS 1464
Query: 1168 LEKYVITKTLTKPPEAYPDAKN----QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQG 1223
++ + K + Y D P ++ + + G+ V Y++
Sbjct: 1465 IQDFCFAKEVKLG--TYSDRNGVGPAPPGALISTKKMLADPRAEPQYGERVLYVV----- 1517
Query: 1224 TSSGSSVGIAQRARHPDELKKGDGKWM-IDIDYYASQQIHPVVSRL 1268
+ +A R P+++ G + +D DYY S+ + P + R+
Sbjct: 1518 VTGAPGARLADRCVPPEDMLSPAGAHLRLDADYYISKNLIPPLERI 1563
Score = 108 (43.1 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
LV+EP+ Y+ +L+LDF SLYPS++ YN C++T
Sbjct: 1160 LVMEPQSAFYNSPVLVLDFQSLYPSVMIAYNYCYST 1195
Score = 89 (36.4 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 44/216 (20%), Positives = 95/216 (43%)
Query: 637 ESSERALLNRLMIELYKL-DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
E+SE L+ R M+E+ + D D+L G+ + G L+ RA+ C ++ + R+K
Sbjct: 942 ETSELDLMVR-MVEIVRTHDPDILTGYEVHGGSWGYLIERAR-CMYDYNLCDEFSRMKSQ 999
Query: 696 EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
+ K +G + I + GR + + + R L + Y++ + L++
Sbjct: 1000 SHGRYGKDADRWGFNTTSTIR--VTGRHMINIWRAMRGELNLLQYTMENVVWHLLHRRIP 1057
Query: 756 EVGPHDVLKMFQTLE--SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGK 812
+ + + L +L+ Y +T L +E++ ++ T + + G + +
Sbjct: 1058 HYSWQTLTTWYGSGRHGDLDKLLRYYQTRTRLDIEILEENGLISRTSEQARLLGVDFFSV 1117
Query: 813 TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETK 848
+G++ +VE ++ FR K P+ F V ++
Sbjct: 1118 FSRGSQF-KVESIM---FRIAK---PENFMLVSPSR 1146
Score = 41 (19.5 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 78 VDDDGLGYGDEGQEEDWSVAGLPSSSDDESLDGQRSIKKQRIEK 121
+D D G G+ E P SD+E L + +++ + EK
Sbjct: 399 IDVDERGARRLGRPETMDEDPCPDDSDEERLREAQRLEEAKKEK 442
Score = 37 (18.1 bits), Expect = 7.5e-18, Sum P(4) = 7.5e-18
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 287 AKISTEKDPLLSATAGW 303
A +S DP S AGW
Sbjct: 307 ALVSMSHDPRDSQPAGW 323
Score = 37 (18.1 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 933 RSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKT 967
++PDGL + G L E +K+ ++ + +T
Sbjct: 909 QAPDGLQSGVVVLSEEGTLAERIKHQIKGELLEET 943
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 263 (97.6 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 147/671 (21%), Positives = 266/671 (39%)
Query: 626 NSKAGSNVLCCE----SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRV 681
NS G + C +SE L+N ++ +LD ++ G+ + L+ RA R
Sbjct: 705 NSSFGRSFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY-RF 763
Query: 682 PSSMWSKIGRLKRSEMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYS 741
+ ++ RLK + K + + I I GR + + + R + ++YS
Sbjct: 764 NYDLPEQLSRLKCTSKANFAKKENAWKYTTTSSIN--IVGRHVLNIWRILRGEVNLLNYS 821
Query: 742 LTQLAKTQLNKDRKEVGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLT 799
L + K D + ++Q+ L+ Y +E++ +++
Sbjct: 822 LENVVLNIFKKQTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKI 881
Query: 800 RQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVE 859
R+ I G + + +VE ++ + + YI P ++A+Q + +
Sbjct: 882 REQARIIGIDFMSVISRGSQFKVESIMFRIAKPENYIFPSP----SAKQVAEQNALEALP 937
Query: 860 DRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLV----LEPKKGLYDKYILLLDFNS 915
V E D ++N D + A L L P K + K L F+S
Sbjct: 938 --LVME-PKSDL-YNNPVVVLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHS 993
Query: 916 LYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGL 975
P+I+ N+ V SP+G ++ + +L ++L+ L++ R MVK MK
Sbjct: 994 SNPNIV---NLIKNDVYISPNGYA-YVKENVRKSLLAKMLEELIETRNMVKRGMKDCDSD 1049
Query: 976 KIQQ-LDIQQQALKLTANSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLVQNNL 1033
+ + L+ +Q ALKL AN YG S S R +A+ I + GREIL +++ + N L
Sbjct: 1050 YVNKVLNSRQLALKLIANVTYGYTSASFSGRMPCSEIADTIVETGREILSYSLEYI-NTL 1108
Query: 1034 NL---EVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXX 1090
+ +V+YGDTDS+ + + + ++ I L
Sbjct: 1109 DFCHAKVVYGDTDSLFVELPGATKEQAFDIGQQLANNITSRFPS-PIRLKFEKIYFPCFL 1167
Query: 1091 XXXXXXXXXQFKD-GMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES 1149
+F+ + E KG++ VRRD + + +++ CL + + V +
Sbjct: 1168 LAKKRYVGFKFESVSQKAPIFEAKGIETVRRDGTPVQQQLLRRCLEILFKTKDLSTVKKE 1227
Query: 1150 IHNSLMKVQEDMRSGQVALEKYVITKTLTKPPEAYPDAKNQPHVQV-ALRLKQSGYSTGC 1208
N ++ SG V + + +K + E Y + P V A RL
Sbjct: 1228 FQNVCYQIM----SGNVPVMDFCFSKEVRL--EKYKELSTAPPGAVMARRLMTKDPRREP 1281
Query: 1209 SAGDTVPY-IICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSR 1267
G+ VPY II GT+ +A R+ P+E +DI+YY + + P + R
Sbjct: 1282 QYGERVPYLIIAAAPGTT------LANRSVAPEEFLSSSFS-QLDINYYINNSLIPPLDR 1334
Query: 1268 LCASIEGTSPE 1278
++ G S +
Sbjct: 1335 FL-NLLGASAQ 1344
>UNIPROTKB|A6V6S5 [details] [associations]
symbol:polB "DNA polymerase" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:CP000744 GenomeReviews:CP000744_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 HOGENOM:HOG000221829 KO:K02336 ProtClustDB:PRK05762
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:YP_001348760.1 ProteinModelPortal:A6V6S5 SMR:A6V6S5
STRING:A6V6S5 GeneID:5354072 KEGG:pap:PSPA7_3400 PATRIC:19828452
OMA:SATWSFP BioCyc:PAER381754:GHMY-3442-MONOMER Uniprot:A6V6S5
Length = 788
Score = 195 (73.7 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 63/170 (37%), Positives = 86/170 (50%)
Query: 886 KRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNIC-FTTVE--RSPDG--LVP 940
KR A GG V++ + GLY+ +L+LD+ SLYPSII+ + I VE R PD V
Sbjct: 397 KRPEASPGGFVMDSRPGLYES-VLVLDYKSLYPSIIRTFLIDPVGLVEGLRQPDDEHSVE 455
Query: 941 HLPS---SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGC 997
S+T LP ++ + + R K Q L QALK+ N+ YG
Sbjct: 456 GFRGARFSRTRHCLPAIVARVWEGREAAKRERN-------QPLS---QALKIIMNAFYGV 505
Query: 998 LGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
LG S RF+ LA IT +G I+R T +L++ VIYGDTDS +
Sbjct: 506 LGSSGCRFFDPRLASSITLRGHRIMRRTRELIEAE-GYTVIYGDTDSTFV 554
Score = 95 (38.5 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 49/177 (27%), Positives = 74/177 (41%)
Query: 636 CESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
C+S LL RL L + D D ++G N+ FDL VL AQ +VP ++GR
Sbjct: 201 CDS-RAGLLERLNQWLAEHDPDAIIGWNLVQFDLRVLHEHAQRLKVPL----RLGR-GGD 254
Query: 696 EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREV-SYSLTQLAKTQLNKDR 754
EM G GS + + AGRL+ D R S+SL +A+T L + +
Sbjct: 255 EM-----GWREHGS-RNNHYFAAAAGRLIIDGIEALRSATWSFPSFSLENVARTLLGEGK 308
Query: 755 KEVGPH----DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
P+ ++ +MF E L Y D L + +L + ++G
Sbjct: 309 AIDNPYQRMDEIDRMFA--EDKPALARYNLKDCELVTRIFARTELLDFLLERATVTG 363
Score = 55 (24.4 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVES-IHNSLMKVQEDM 1161
KGL+ VR DWS L++ +I + + +D V + +L +D+
Sbjct: 637 KGLETVRTDWSPLAQRFQQELYLRIFNRQPYQDYVRDYVRRTLAGELDDL 686
Score = 47 (21.6 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 377 QRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLNL 433
Q V +P + + ++ E AE + P+A R Q LGL + QL+NL
Sbjct: 41 QPSVAFVPVEQRVRVETLLAGESGAE---LRPLALRDFQQRPVLGLYCQQHRQLMNL 94
Score = 42 (19.8 bits), Expect = 2.1e-11, Sum P(5) = 2.1e-11
Identities = 21/92 (22%), Positives = 36/92 (39%)
Query: 803 TNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRN 862
TN G+L+ L+G QR Y+L A V + Y +R N + + +
Sbjct: 162 TNARGDLYSIALEGC-GQRQVYMLGPA-NGDASAVDFRLDYCDSRAGLLERLNQWLAEHD 219
Query: 863 VEELTNED-ANFDNDTSHNDHRKGKRGPAYAG 893
+ + + FD H +H + + P G
Sbjct: 220 PDAIIGWNLVQFDLRVLH-EHAQRLKVPLRLG 250
Score = 40 (19.1 bits), Expect = 1.3e-16, Sum P(5) = 1.3e-16
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1251 IDIDYYASQQIHPVVSRL 1268
ID ++Y +Q+ PV +
Sbjct: 752 IDYEHYVGKQLQPVADAI 769
Score = 39 (18.8 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1389 RQADGFVSMYYKGL 1402
R+ADG M +KGL
Sbjct: 626 RRADGGEEMVFKGL 639
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 133 (51.9 bits), Expect = 1.4e-16, Sum P(5) = 1.4e-16
Identities = 40/120 (33%), Positives = 61/120 (50%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKI--QQLDIQQQALKLTA 991
SP+G+ PS + GVLP +L+ +++ R MVK MK + + L+ +Q LKL A
Sbjct: 263 SPNGIAFVKPSVRK-GVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLEARQLGLKLIA 321
Query: 992 NSMYG--CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
N +G FS R + + I + RE L + LV + V+YGDTDS+ +
Sbjct: 322 NVTFGYTAANFSG-RMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFV 380
Score = 113 (44.8 bits), Expect = 1.4e-16, Sum P(5) = 1.4e-16
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 168 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTC 226
Query: 932 ERSPDGLVPH 941
+ L H
Sbjct: 227 LGHVENLGKH 236
Score = 101 (40.6 bits), Expect = 1.4e-16, Sum P(5) = 1.4e-16
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + +K+ E G+ ++
Sbjct: 442 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCLKLLE----GKASI 497
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 498 QDFIFAKEY-RGSASYKPGACVPALELTRKMLTHDRRSEPRVGERVPYVII--YGTPG-- 552
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
V + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 553 -VPLIQLVRRPVEVMQ-DPTLRLNATYYITKQILPPLARIFSLI 594
Score = 47 (21.6 bits), Expect = 1.4e-16, Sum P(5) = 1.4e-16
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ FD C S+ V K S+ E
Sbjct: 665 ELERQQEQLVKICRNCTGCFDRHIPCVSLNCPVLYKLSRVNRE 707
Score = 46 (21.3 bits), Expect = 1.7e-16, Sum P(5) = 1.7e-16
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
S SE + T ++ TL CP C + + G
Sbjct: 613 SRSEHEGRKGTISQYFTTLHCPVCDDLTQHG 643
Score = 40 (19.1 bits), Expect = 1.4e-16, Sum P(5) = 1.4e-16
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 786 SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
+++++ L ++ T ++ + G + L RVE ++L + YI
Sbjct: 120 NLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYI 170
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 181 (68.8 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
Identities = 100/446 (22%), Positives = 174/446 (39%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ--LDIQQQALKLTA 991
SP G+V + G+LP +L ++ R+MVK MK Q L +Q LKL A
Sbjct: 1664 SPCGVV-FVKREVREGILPRMLTEILDTRQMVKQSMKLHKDSSALQRILHSRQLGLKLMA 1722
Query: 992 NSMYG--CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNN--LNLEVIYGDTDSIMI 1047
N YG FS R + + + + +GRE L + LV+NN + V+YGDTDS+ +
Sbjct: 1723 NVTYGYTAANFSG-RMPSVEVGDSVVSKGRETLERAIKLVENNEEWKVRVVYGDTDSMFV 1781
Query: 1048 HSXXXXXXXXXXXXXXVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMP 1106
+ + V + + +++ L+ + D
Sbjct: 1782 LVPGRNRAEAFRIGEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKKRYVGYMYETAD-QE 1840
Query: 1107 YEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQV 1166
V E KG++ VRRD ++ + L +IL E +DV I + + + SG+
Sbjct: 1841 QPVYEAKGIETVRRDGCPAVAKMLEKVL-RILFET--QDV-SKIKAYVCRQFTKLLSGRA 1896
Query: 1167 ALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
L+ + K + Y P +++ + Q G+ VP+II +
Sbjct: 1897 NLQDLIFAKEF-RGLNGYKPTACVPALELTRKWMQKDPRHVPRRGERVPFII-----VNG 1950
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
+ + + R P ++ +G I+ YY ++ I P ++R C + G + + D
Sbjct: 1951 PPGMQLIRLVRSPHDILANEGH-KINAIYYITKAIIPPLNR-CLLLIGAN---VHDWFAS 2005
Query: 1287 DPSKFQXXXXXXXXXXXXXXLLFAVGDEERYRGCEPLILSCPSCSSTFDCPAVC--SSIC 1344
P K A +Y ++ C + CP ++ C
Sbjct: 2006 LPRKLLMTPAVGTANELAGAR-GAKSTISQYFSTTSCVIDCGRQTKAGICPDCLKNATTC 2064
Query: 1345 MSV-SEKPSKPETEYNFWRTLRCPKC 1369
+ V S+K ++ E Y R + C C
Sbjct: 2065 VVVLSDKTARLERGYQLTRQI-CQAC 2089
Score = 113 (44.8 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 883 RKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHL 942
R R P Y L++EP+ Y +++LDF SLYPS+I YN CF+T G V HL
Sbjct: 1578 RAHMRAPEYLA-LIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYCFSTCL----GRVEHL 1632
Query: 943 PSS 945
S
Sbjct: 1633 GGS 1635
Score = 61 (26.5 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
Identities = 39/202 (19%), Positives = 83/202 (41%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQ-VCRVPSSMWSKIGRLKRSE 696
+SE L+ + D+D+ G+ I ++ RA+ +C + + S++ K +
Sbjct: 1375 TSEAEAFEALLALCERWDADIYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRVPTQKVRD 1434
Query: 697 MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
+ + R F + + GR+L D + R + SY+ + L+K
Sbjct: 1435 F--VDEDREQF---TDLDVEMKLCGRILLDVWRLMRSEIALTSYTFENVMYHILHKRCPW 1489
Query: 757 VGPHDVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQG 816
+ + F + + ++EY ++ L+ L +L T ++ + G + + L
Sbjct: 1490 HTAKSLTEWFGSPCTRWIVMEYYLERVRGTLTLLDQLDLLGRTSEMAKLIGIQFYEVLSR 1549
Query: 817 ARAQRVEYLLLHAFRAKKYIVP 838
RVE ++L + K +VP
Sbjct: 1550 GSQFRVESMMLRIAKPKN-LVP 1570
Score = 50 (22.7 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 58 AEDEYDALVARRREEARGFIVDDDGLG-YGDE--GQEEDWSVAGLPSSSDDESLDGQRSI 114
+ D+ D+ + +R++ + ++G G GDE G+E D S++ P S + +
Sbjct: 1141 SSDDIDSPIKIKRQKITMMLQAEEGDGGSGDEDAGEELDCSLSLTPLSQAKDKCKATPTS 1200
Query: 115 KKQRIEKRGKKENNQNVR 132
K R + GK + R
Sbjct: 1201 SKAR--ETGKSRLKRGTR 1216
>UNIPROTKB|P21189 [details] [associations]
symbol:polB "DNA polymerase II" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045004 "DNA replication proofreading"
evidence=IDA] [GO:0009432 "SOS response" evidence=IEA;IEP]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005694 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
SUPFAM:SSF53098 EMBL:M35371 EMBL:M62646 EMBL:M37727 EMBL:M38283
GO:GO:0009432 GO:GO:0003887 GO:GO:0006297 EMBL:X54847 PIR:S15943
RefSeq:NP_414602.1 RefSeq:YP_488366.1 PDB:1Q8I PDB:3K57 PDB:3K58
PDB:3K59 PDB:3K5L PDB:3K5M PDB:3K5N PDB:3K5O PDB:3MAQ PDBsum:1Q8I
PDBsum:3K57 PDBsum:3K58 PDBsum:3K59 PDBsum:3K5L PDBsum:3K5M
PDBsum:3K5N PDBsum:3K5O PDBsum:3MAQ ProteinModelPortal:P21189
SMR:P21189 IntAct:P21189 PRIDE:P21189
EnsemblBacteria:EBESCT00000004906 EnsemblBacteria:EBESCT00000016904
GeneID:12932627 GeneID:944779 KEGG:ecj:Y75_p0060 KEGG:eco:b0060
PATRIC:32115221 EchoBASE:EB0740 EcoGene:EG10747 eggNOG:COG0417
HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
BioCyc:EcoCyc:EG10747-MONOMER BioCyc:ECOL316407:JW0059-MONOMER
BioCyc:MetaCyc:EG10747-MONOMER EvolutionaryTrace:P21189
Genevestigator:P21189 GO:GO:0008296 GO:GO:0045004 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 Uniprot:P21189
Length = 783
Score = 212 (79.7 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 109/419 (26%), Positives = 166/419 (39%)
Query: 890 AYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHL----PSS 945
A GG V++ + GLYD +L+LD+ SLYPSII+ + I P GLV + P
Sbjct: 398 ASPGGYVMDSRPGLYDS-VLVLDYKSLYPSIIRTFLI-------DPVGLVEGMAQPDPEH 449
Query: 946 KTTGVLPELLKNLVQRRRMVKT--WMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNS 1003
T G L + T W K Q QALK+ N+ YG LG +
Sbjct: 450 STEGFLDAWFSREKHCLPEIVTNIWHGRDEA-KRQGNKPLSQALKIIMNAFYGVLGTTAC 508
Query: 1004 RFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIH-SXXXXXXXXXXXXX 1062
RF+ LA IT +G +I+R T L++ +VIYGDTDS +
Sbjct: 509 RFFDPRLASSITMRGHQIMRQTKALIEAQ-GYDVIYGDTDSTFVWLKGAHSEEEAAKIGR 567
Query: 1063 XVIQEVN-------KKYK---CLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIER 1112
++Q VN +K + LE++ + + G+ E ++
Sbjct: 568 ALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ 627
Query: 1113 ----KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
KGL+ VR DW+ L+++ +I ++ V + LM + D R
Sbjct: 628 RMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDAR------ 681
Query: 1169 EKYVITKTLTKPPEAYPDAKN-QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSG 1227
V K L +P Y +N PHV+ A RL G + Y +GT
Sbjct: 682 --LVYRKRLRRPLSEYQ--RNVPPHVRAA-RLADEENQ---KRGRPLQYQ---NRGT--- 727
Query: 1228 SSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
+ P+ L +D ++Y ++Q+ PV + IE + LGL
Sbjct: 728 --IKYVWTTNGPEPLDYQRSP--LDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGL 782
Score = 87 (35.7 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 41/173 (23%), Positives = 69/173 (39%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
+S LL +L D DV++G N+ FDL +L A+ R+P ++GR SE+
Sbjct: 199 ASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPL----RLGR-DNSEL 253
Query: 698 PKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVS-YSLTQLAKTQLNKDRKE 756
G F +G + GRL+ D + S +SL +A+ L + +
Sbjct: 254 EWREHG---FKNGV---FFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSI 307
Query: 757 VGPHDVLKMFQT--LESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG 807
P D + E L Y D L ++ ++P + ++G
Sbjct: 308 DNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG 360
Score = 37 (18.1 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 377 QRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALGLKTEIANQLLN 432
Q V IP + + I++ E+ R++P+A + + GL QL+N
Sbjct: 39 QESVAFIPADQVPRAQHILQGEQGF---RLTPLALKDFHRQPVYGLYCRAHRQLMN 91
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 182 (69.1 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 75/342 (21%), Positives = 143/342 (41%)
Query: 934 SPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ--LDIQQQALKLTA 991
+P+G++ + S +L ++L +++ R MVKT MK + Q L+ +Q ALKL A
Sbjct: 1202 APNGMI-YARSEVRKSLLAKMLTEILETRVMVKTGMKVDKDDRALQRLLNNRQLALKLIA 1260
Query: 992 NSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLVQN--NLNLEVIYGDTDSIMIH 1048
N YG S S R +A+ I Q GRE L + + + EV+YGDTDS+ ++
Sbjct: 1261 NVTYGYTSASFSGRMPCSEIADSIVQSGRETLEKAIAFIHSVERWGAEVVYGDTDSLFVY 1320
Query: 1049 SXXXXXXXXXXXXXXVIQEV-NKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPY 1107
+ Q V N +++ + + ++
Sbjct: 1321 LKGRTRDQAFDIGEEIAQAVTNMNPHPVKLKFEKVYHPCVLLAKKRYVGFKYEHRNQKEP 1380
Query: 1108 EVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVA 1167
E + KG++ VRRD + +++ + L + V + K+ + G+V+
Sbjct: 1381 E-FDAKGIETVRRDGTPAEQKIEEKALKLLFRTADLSQVKSYFQSQCTKIMQ----GRVS 1435
Query: 1168 LEKYVITKTLTKPPEAYPDAKNQPH-VQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSS 1226
++ + + + Y + P ++ + G+ VPY++ G +
Sbjct: 1436 VQDFCFARAVKLG--TYSENGTLPAGALISTKKMLEDPRAEPQYGERVPYVVVT--G-AP 1490
Query: 1227 GSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
GS + R P+ L + D + +D +YY ++ I P + R+
Sbjct: 1491 GSR--LIDRCVPPETLLQ-DAQLDLDAEYYITKNIIPPLERI 1529
Score = 104 (41.7 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 863 VEELTNEDANFDNDTSHNDHRK--GKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSI 920
VE L A +N + RK G++ LV+EP+ Y +++LDF SLYPSI
Sbjct: 1097 VESLMFRIAKPENFILVSPSRKQVGQQNALECLPLVMEPQSDFYTSPLIVLDFQSLYPSI 1156
Query: 921 IQEYNICFTT 930
+ YN C++T
Sbjct: 1157 MIAYNYCYST 1166
Score = 100 (40.3 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 44/223 (19%), Positives = 102/223 (45%)
Query: 637 ESSERALLNRLMIELYKL-DSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRS 695
ES+E L+NRL +++ +L D D++ G+ + ++ RA+ + + ++ R+K
Sbjct: 913 ESTELDLINRL-VDIVRLHDPDIITGYEVHNSSWGFIIERARK-KYDFDLCDELSRVKSH 970
Query: 696 EMPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRK 755
+ K +G + I I GR + + + R + + Y++ + L++
Sbjct: 971 AHGRFGKEADKWGFDHTSSIR--ITGRHIINIWRAMRSEMNLLQYTMENVVFHLLHRRIP 1028
Query: 756 EVGPHDVLKMFQTLE--SLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISG-NLWGK 812
D+ +Q+ + M++I Y + +++E++ ++P T + + G + +
Sbjct: 1029 HYSFRDLTAWYQSDKPRDFMKVINYYTSRVQMNIEILNANELIPRTSEQARLLGIDFYSV 1088
Query: 813 TLQGARAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSN 855
+G++ +VE L+ FR K P+ F V ++ + N
Sbjct: 1089 FSRGSQF-KVESLM---FRIAK---PENFILVSPSRKQVGQQN 1124
Score = 61 (26.5 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 100 PSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSLT 139
PSSSD +S+ Q++I+ + + + G N V+ PN +T
Sbjct: 553 PSSSDGQSISSQKTIRLKALSQYGTL-NFPVVKDPNDPMT 591
Score = 40 (19.1 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 843 YVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDTSHND 881
YV E + SN G+ + + + + ++ D D S N+
Sbjct: 397 YVDEDAVRATESNSGLYSSDEDGMIDIFSDDDYDNSENE 435
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 186 (70.5 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 98/400 (24%), Positives = 165/400 (41%)
Query: 945 SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGCLGFS-N 1002
SK GV+P LL+ ++ R MVK+ MK K+++ LD +Q ALKL AN YG + +
Sbjct: 713 SKREGVMPLLLREILAARIMVKSAMKRTKNKKLKRILDARQLALKLVANVSYGYTAANWS 772
Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNL--NLEVIYGDTDSIMIHSXXXXXXXXXXX 1060
R LA+ I +GRE L ++++VQ EVIYGDTDS+ +
Sbjct: 773 GRMPCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLVRGASVEEAFEI 832
Query: 1061 XXXVIQEV-NKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVR 1119
++ +V N + + L+ + ++ ++ KG++ VR
Sbjct: 833 GRRIVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEHENDEGS--LDAKGIETVR 890
Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
RD + EV + L I S+ + + + ++ ++ + ++ S K+V K
Sbjct: 891 RDTCPIVAEVLEKSLGLIFSQ-NWKTFITYLNTVVLNLPQENFS------KFVFCKEYRG 943
Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
A + + +R K + T G+ VPY+I G + GS+V R+
Sbjct: 944 DYSARAMVPQKKIAEARIR-KCPSHIT--LRGERVPYVII--DGVT-GSTVYSCVRSI-- 995
Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIE---GTSPERLADCLGLDPSKFQXXXX 1296
D+ + ++ I+ YY + I + R+ I P C D S+
Sbjct: 996 DQFARNP-EYKINTFYYLNAHILAALRRVTDLIPMKIDFLPFAAEQCFVSDCSRIGKTPW 1054
Query: 1297 XXXXXXXXXXLLFAV---GDEERYRGCEPLILSCPSCSST 1333
L A+ G E R R +I C SC S+
Sbjct: 1055 CIECEQNPEELALALVQLGRESRARS--QIIQYCTSCQSS 1092
Score = 104 (41.7 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
L+LEP+ +Y +++LDF SLYPS++ YN C++T+
Sbjct: 621 LILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTI 657
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 186 (70.5 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 98/400 (24%), Positives = 165/400 (41%)
Query: 945 SKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQ-LDIQQQALKLTANSMYGCLGFS-N 1002
SK GV+P LL+ ++ R MVK+ MK K+++ LD +Q ALKL AN YG + +
Sbjct: 713 SKREGVMPLLLREILAARIMVKSAMKRTKNKKLKRILDARQLALKLVANVSYGYTAANWS 772
Query: 1003 SRFYAKPLAELITQQGREILRSTVDLVQNNL--NLEVIYGDTDSIMIHSXXXXXXXXXXX 1060
R LA+ I +GRE L ++++VQ EVIYGDTDS+ +
Sbjct: 773 GRMPCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLVRGASVEEAFEI 832
Query: 1061 XXXVIQEV-NKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIERKGLDMVR 1119
++ +V N + + L+ + ++ ++ KG++ VR
Sbjct: 833 GRRIVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEHENDEGS--LDAKGIETVR 890
Query: 1120 RDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEKYVITKTLTK 1179
RD + EV + L I S+ + + + ++ ++ + ++ S K+V K
Sbjct: 891 RDTCPIVAEVLEKSLGLIFSQ-NWKTFITYLNTVVLNLPQENFS------KFVFCKEYRG 943
Query: 1180 PPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSVGIAQRARHP 1239
A + + +R K + T G+ VPY+I G + GS+V R+
Sbjct: 944 DYSARAMVPQKKIAEARIR-KCPSHIT--LRGERVPYVII--DGVT-GSTVYSCVRSI-- 995
Query: 1240 DELKKGDGKWMIDIDYYASQQIHPVVSRLCASIE---GTSPERLADCLGLDPSKFQXXXX 1296
D+ + ++ I+ YY + I + R+ I P C D S+
Sbjct: 996 DQFARNP-EYKINTFYYLNAHILAALRRVTDLIPMKIDFLPFAAEQCFVSDCSRIGKTPW 1054
Query: 1297 XXXXXXXXXXLLFAV---GDEERYRGCEPLILSCPSCSST 1333
L A+ G E R R +I C SC S+
Sbjct: 1055 CIECEQNPEELALALVQLGRESRARS--QIIQYCTSCQSS 1092
Score = 104 (41.7 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV 931
L+LEP+ +Y +++LDF SLYPS++ YN C++T+
Sbjct: 621 LILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTI 657
>UNIPROTKB|K7GQ23 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 SUPFAM:SSF53098
GeneTree:ENSGT00550000074891 EMBL:CU207412 EMBL:FP339588
Ensembl:ENSSSCT00000035548 Uniprot:K7GQ23
Length = 135
Score = 206 (77.6 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 48/141 (34%), Positives = 74/141 (52%)
Query: 432 NLNVSNYIVSPVKRRYAFGQAEIPAGENY-VLKINYPFKDPPLPADLKGENFCSLLGTHS 490
+LN +PV + + + + Y ++K + P LP DLKGE F + GT++
Sbjct: 1 DLNTGKEKGTPVTMKDVYDEFDEKIAAKYKIMKFKSKAEMPQLPQDLKGETFSHVFGTNT 60
Query: 491 SALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITVDSPKDIRVSSSSKHVAEVP 550
S+LELFL+ RK+KGP WL + P +SWCK+E P + V K V P
Sbjct: 61 SSLELFLMNRKIKGPCWLEVKNPQLLNQP--ISWCKFEAMALKPDLVNVI---KDVGP-P 114
Query: 551 PVTVTAINLKTVFNKRQDVNE 571
P+ V ++++KT+ N + NE
Sbjct: 115 PLVVMSLSMKTMQNAKTHENE 135
>UNIPROTKB|P26811 [details] [associations]
symbol:dpo1 "DNA polymerase 1" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE006641
GenomeReviews:AE006641_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
EMBL:X64466 EMBL:U92875 EMBL:Y18930 PIR:F90201 PIR:S23019
RefSeq:NP_342079.1 PDB:1S5J PDBsum:1S5J ProteinModelPortal:P26811
SMR:P26811 DIP:DIP-48850N GeneID:1454836 KEGG:sso:SSO0552
HOGENOM:HOG000108124 KO:K02319 OMA:HKPYFLT ProtClustDB:PRK05761
EvolutionaryTrace:P26811 Uniprot:P26811
Length = 882
Score = 242 (90.2 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 93/337 (27%), Positives = 158/337 (46%)
Query: 887 RGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE----RSP------D 936
+G Y G +V++P G++ I +LDF SLYPSII+ +N+ + TV+ + P
Sbjct: 490 KGKGYKGAVVIDPPAGIFFN-ITVLDFASLYPSIIRTWNLSYETVDIQQCKKPYEVKDET 548
Query: 937 GLVPHLPSSKTTG---VLPELLKNLVQRRRMVKTWMKTASGLKIQQL--DIQQQALKLTA 991
G V H+ G V+ LL++ R ++ K K + + Q+L D+ Q+A+K+
Sbjct: 549 GEVLHIVCMDRPGITAVITGLLRDF--RVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFI 606
Query: 992 NSMYGCLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMIHSXX 1051
N+ YG G YA +AE +T GR ++ STV + L V+YGDTDS+ + +
Sbjct: 607 NATYGVFGAETFPLYAPAVAESVTALGRYVITSTVKKAREE-GLTVLYGDTDSLFLLNPP 665
Query: 1052 XXXXXXXXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGMPYEVIE 1111
+I+ V + +DL+ ++DG ++
Sbjct: 666 KNSLEN------IIKWVKTTFN---LDLEVDKTYKFVAFSGLKKNYFGVYQDGK----VD 712
Query: 1112 RKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKV----QEDMRSGQVA 1167
KG+ + +R+ K+V + ++S S DV E I ++ V E +++
Sbjct: 713 IKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKE-IKRKIVDVVKGSYEKLKNKGYN 771
Query: 1168 LEKYVITKTLTKPPEAYPDAKNQP-HVQVALRLKQSG 1203
L++ L+KP +AY KN P HV+ AL+L+ G
Sbjct: 772 LDELAFKVMLSKPLDAYK--KNTPQHVKAALQLRPFG 806
Score = 50 (22.7 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 740 YSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIEYGETDAWLSMEL 789
Y+L +AK L + +V D L F +E +LIEY DA ++++L
Sbjct: 377 YNLDAVAKALLGTSKVKV---DTLISFLDVE---KLIEYNFRDAEITLQL 420
Score = 40 (19.1 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 45 YNIKLENPIYDTVAEDEYDALVARRREEARGFIVDDDGLGYGDEGQEEDWSVAGL 99
++I LE PI T D++D R G+ ++ + G++E +AGL
Sbjct: 300 FDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVA--GKDEAKYLAGL 352
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 173 (66.0 bits), Expect = 2.8e-13, Sum P(4) = 2.8e-13
Identities = 125/598 (20%), Positives = 240/598 (40%)
Query: 472 PLPADLKGENFCSLLGTHSSALELFLVKRKVKGPSWLSISKFSSCPAPQRVSWCKYEITV 531
PL + K C G ++ L L+ ++K ++F++ AP+R + ++
Sbjct: 2190 PLSTEPKARKLCHKRGINTDGLRRVLLTTQMK-------NQFAALGAPKRETSQIEGPSL 2242
Query: 532 DSPKDIRVS----SSSKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC--HKAKI 585
++ +VS +K + EV +T+ ++ L R+D+ +C +
Sbjct: 2243 NNTYGFKVSVQNLQEAKSLHEVQHLTLISMELHA--RTRRDLEPDPEFDPICALFYCVSS 2300
Query: 586 DTPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFNKEAT--DRNSKAGSNVLCCESSERAL 643
DT + ++ K+ ++ V+ D + G +A R+ G V + ER L
Sbjct: 2301 DTALPNTDKKE---ITGAIVIDS-DRTLSSQGSRDQAPLLTRSGITGLEVSYA-TDERTL 2355
Query: 644 LNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-KLRK 702
++ + + D D+L+G+ + LL RA V + I R+ +
Sbjct: 2356 FQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAAALNV--DLCQMISRVPDDNKENRFAA 2413
Query: 703 GRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDV 762
+GS I I GR++ + + R+ + ++Y+ + L++ R + V
Sbjct: 2414 ELDEYGSDTMSEIN--IVGRIILNIWRMMRNEVNLMNYTFENVGFHVLHQ-RFPLFTFRV 2470
Query: 763 LKMFQTLESLMELIEYGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
L + ++ ++ + D ++S ++L+ L ++ T ++ + G + L
Sbjct: 2471 LSDW--FDNKADVYRWKMVDHYVSRVHGNLQLLQKLDLIDRTSEMARLFGIQFLHVLTRG 2528
Query: 818 RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQRSNHGVEDRNVEELTNEDANFDNDT 877
RVE ++L + YI P + + +M + + + +N D +
Sbjct: 2529 SQYRVESMMLRVAKPMNYI-PVTPSIQQRAQMKAPQCVPLIMEPESRFYSNAVLVLDFQS 2587
Query: 878 SHNDHRKGKRGPAYAGGLVLEPKKGL--YDKYILLLDFNSLYPSIIQEYNICFTTVERSP 935
+ Y L P + L YD + + P ++ + T SP
Sbjct: 2588 LYPSIVIAYN---YCFSTCLGPVENLGKYDAFKFGCTSLRVPPDLLYQIRHDITV---SP 2641
Query: 936 DGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKI--QQLDIQQQALKLTANS 993
G+ PS + GVLP +L+ +++ R MVK MK K + L+ +Q LK AN
Sbjct: 2642 SGVAFVKPSVRK-GVLPRMLEEILKTRIMVKQSMKAYKHDKAITRMLEARQLGLKYIANF 2700
Query: 994 MYG--CLGFSNSRFYAKPLAELITQQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
YG FS R L + I + RE L + LV + V+YGDTDS+ +
Sbjct: 2701 TYGYTAANFSG-RMPCIELGDSIVHKARETLERAIKLVNDTKKWGAHVVYGDTDSMFV 2757
Score = 114 (45.2 bits), Expect = 2.8e-13, Sum P(4) = 2.8e-13
Identities = 36/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + + + R + + + N MK+ E G+ ++
Sbjct: 2819 VFDAKGIETVRRDSCPAVSKILECSIKLLFETRDISQIKQYVQNQCMKLLE----GKASI 2874
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + AY P +++ R+ + G+ VPY+I G
Sbjct: 2875 QDFIFAKEY-RGSSAYKPGSCVPALEITRRMLAYDRRSEPRVGERVPYVIV--YGMPG-- 2929
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+ + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2930 -LPLIQLVRRPTEVLQ-DPSLRLNATYYITKQILPPLARVFSLI 2971
Score = 51 (23.0 bits), Expect = 2.8e-13, Sum P(4) = 2.8e-13
Identities = 25/101 (24%), Positives = 40/101 (39%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG-----RISP---GMIANQ 1386
+ P + + + SE + T ++ TL CP C E + G R P +I NQ
Sbjct: 2981 ELPRIQKTASTARSELEGRKGTISQYFTTLHCPVCDELTQYGICTKCRSQPQHVAVILNQ 3040
Query: 1387 ----VKRQADGFVSMYYKGLMMCDDET--CKYTTCSLNLRL 1421
++R+ D V + K C D C C + +L
Sbjct: 3041 EIRELERKQDQLVKIC-KNCTGCFDRQIPCVSLNCPVLFKL 3080
Score = 48 (22.0 bits), Expect = 2.8e-13, Sum P(4) = 2.8e-13
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 95 SVAGLPSSSDD-ESLDG-QRSIKKQRIEKR 122
S LP + ESLDG Q+S K++R+ K+
Sbjct: 899 SKINLPQPIESVESLDGSQKSRKRRRLSKK 928
Score = 45 (20.9 bits), Expect = 5.6e-13, Sum P(4) = 5.6e-13
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 109 DGQR--SIKKQRIEKRGKKENNQNV-RKPNPSLT 139
+GQ ++ K+ ++KR +K N NV ++P P T
Sbjct: 1486 EGQSGLAVLKELLQKRQQKAQNANVTQEPLPVKT 1519
Score = 45 (20.9 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R + L+ C +C+ FD C S+ V K S+ E
Sbjct: 3044 ELERKQDQLVKICKNCTGCFDRQIPCVSLNCPVLFKLSRVSRE 3086
Score = 40 (19.1 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 465 NYPFKDPPLPADL 477
N P KD LP+DL
Sbjct: 821 NIPDKDSALPSDL 833
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 141 (54.7 bits), Expect = 3.7e-11, Sum P(6) = 3.7e-11
Identities = 47/154 (30%), Positives = 76/154 (49%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G V + SS GVLP +L+ +++
Sbjct: 2460 GTYDEFKFGCASLRVPPDLLYQLRNDITV---SPNG-VAFVKSSVRRGVLPRMLEEILKT 2515
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYGCLGFSNSRFYAK-PLAEL---IT 1015
R MVK MK K + LD +Q LKL AN +G ++++ F + P E+ I
Sbjct: 2516 RIMVKQSMKAYRNDKALSRLLDARQLGLKLIANVTFG---YTSANFSGRMPCVEVGDSIV 2572
Query: 1016 QQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
+ RE L + +V + V+YGDTDS+ +
Sbjct: 2573 HKARETLERAIKMVNDTKKWGARVVYGDTDSMFV 2606
Score = 107 (42.7 bits), Expect = 8.1e-08, Sum P(6) = 8.1e-08
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
LV+EP+ Y +++LDF SLYPSI+ YN C++T
Sbjct: 2416 LVMEPESRFYSNSVIVLDFQSLYPSIVIAYNYCYST 2451
Score = 95 (38.5 bits), Expect = 3.7e-11, Sum P(6) = 3.7e-11
Identities = 38/160 (23%), Positives = 70/160 (43%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R V + + +KV E G+ ++
Sbjct: 2668 VFDAKGIETVRRDGCPGVSKILERSLKLLFESRDISQVKQYVQRQCVKVVE----GKASM 2723
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ K + +Y P +++ R+ G+ VPY+I G S G
Sbjct: 2724 QDLTFAKEY-RGSGSYRPGACVPALELTRRMMAFDRRLEPRVGERVPYVIV--YG-SPG- 2778
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
V + Q R P E+ + D ++ YY ++QI P ++R+
Sbjct: 2779 -VPLIQLVRRPLEVLQ-DPSLRLNATYYITKQILPPLARI 2816
Score = 75 (31.5 bits), Expect = 3.7e-11, Sum P(6) = 3.7e-11
Identities = 42/215 (19%), Positives = 88/215 (40%)
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKR-SEMP 698
E+ L + + K D D+LVG+ + LL RA V ++ ++ R+ S+
Sbjct: 2203 EKELFEEVSNIIRKYDPDILVGYEVQMHSWGYLLQRASTLGV--NLCQQLSRVPGDSQQN 2260
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
+ +G+ I I GR++ + + + +Y+ +A L++ R +
Sbjct: 2261 HFIPEKDEYGAETMTEIH--ITGRIILNIWRIMKTEAALNNYTFENVAFHLLHQ-RYPLY 2317
Query: 759 PHDVLK-MFQTLESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGA 817
H L F T +++++ + +++L+ ++ T +L + G + L
Sbjct: 2318 SHRTLSDWFDTHLHRWKVMDHYVSRVCGTVQLLQQQDIIGRTSELARVFGIQFYHVLTRG 2377
Query: 818 RAQRVEYLLLHAFRAKKYIVPDKFTYVKETKMAKQ 852
RVE ++L + YI T + + A Q
Sbjct: 2378 SQYRVESMMLRVAKPMNYIPVTPSTQQRAQQRAAQ 2412
Score = 54 (24.1 bits), Expect = 3.7e-11, Sum P(6) = 3.7e-11
Identities = 31/134 (23%), Positives = 53/134 (39%)
Query: 303 WKEVSGGNMVLDEGKSGLNCQESEFEVDDD-GSLPFYILDAHEQLSGANMGTLYLFGKVK 361
W++ S + DE K L +D + ++ + LS + G L V+
Sbjct: 1955 WQD-SPDEVEQDEDKENLTGGLQPLSMDQNLNETLLENAESKDHLSPSFFGIKGLVSDVR 2013
Query: 362 AGSTHHSCCVVVKNMQRCVYAIPNGPLFQTDEIMKLEKDAEESRISPMAFRKKLQDVALG 421
HS V +N A P+ D + ++ + S + A R+ L
Sbjct: 2014 CSHLLHSTPVQRRNSTDDE-ASSCSPVRHEDTECRSQRLHQRSNKNKNALRRVL------ 2066
Query: 422 LKTEIANQLLNLNV 435
L T++ NQL+N+NV
Sbjct: 2067 LSTQVKNQLINMNV 2080
Score = 50 (22.7 bits), Expect = 3.7e-11, Sum P(6) = 3.7e-11
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1349 EKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
E+ +K T ++ TL CP C E + G
Sbjct: 2847 EEGTKKGTISQYFTTLHCPVCDELTQLG 2874
Score = 45 (20.9 bits), Expect = 7.6e-08, Sum P(4) = 7.6e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 736 REVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLM 773
+ V+ LT +A N D +E GP ++ K L +M
Sbjct: 435 KAVTQQLTGIASCVYNSDDEEAGP-ELEKKESELSKIM 471
Score = 42 (19.8 bits), Expect = 3.7e-11, Sum P(6) = 3.7e-11
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 184 PDEADXXXXXXXXXXNIKSFVSVNSVKTNSQLVTNSTNS 222
PD D +IK + S+ V+ N+ L+ S
Sbjct: 636 PDLEDLMFGNSKLAQSIKKYSSIKHVEKNTLLILEDQRS 674
Score = 39 (18.8 bits), Expect = 7.2e-11, Sum P(6) = 7.2e-11
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 57 VAEDEYDALVARRREEARGFIVDDDGLGYGDE 88
V+++ +ALV + F VDDD +G++
Sbjct: 1563 VSQEAANALVGLGNRTQKMFDVDDD-FNHGND 1593
Score = 37 (18.1 bits), Expect = 6.8e-10, Sum P(6) = 6.8e-10
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 1321 EPLILSCPSCSSTFDCPAVCSSICMSVSEKPSK 1353
+ L+ C SCS + + C S+ + K S+
Sbjct: 2902 DQLLKICRSCSGSAERQVPCVSLDCPILYKLSR 2934
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 136 (52.9 bits), Expect = 4.9e-11, Sum P(5) = 4.9e-11
Identities = 46/154 (29%), Positives = 76/154 (49%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G+ PS + GVLP +L+ +++
Sbjct: 2641 GKYDEFKFGCTSLRVPPDLLYQVRHDITV---SPNGVAFVKPSVRK-GVLPRMLEEILKT 2696
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYGCLGFSNSRFYAK-PLAEL---IT 1015
R MVK MK + + LD +Q LKL AN +G ++++ F + P E+ I
Sbjct: 2697 RFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFG---YTSANFSGRMPCIEVGDSIV 2753
Query: 1016 QQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
+ RE L + LV + V+YGDTDS+ +
Sbjct: 2754 HKARETLERAIKLVNDTKKWGARVVYGDTDSMFV 2787
Score = 112 (44.5 bits), Expect = 1.2e-08, Sum P(5) = 1.2e-08
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2575 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2632
Score = 101 (40.6 bits), Expect = 4.9e-11, Sum P(5) = 4.9e-11
Identities = 36/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2849 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLE----GKASI 2904
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 2905 QDFIFAKEY-RGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVII--YGTPG-- 2959
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
V + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2960 -VPLIQLVRRPVEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 3001
Score = 82 (33.9 bits), Expect = 4.9e-11, Sum P(5) = 4.9e-11
Identities = 59/304 (19%), Positives = 126/304 (41%)
Query: 543 SKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC--HKAKIDTPMLASEWKKPGML 600
+K + E+ +T+ ++ L R+D+ +C + DTP+ +E + L
Sbjct: 2288 AKALHEIQNLTLISVELHA--RTRRDLEPDPEFDPICALFYCISSDTPLPDTEKTE---L 2342
Query: 601 SHFTVVRKLDGGIFPMGFNKEAT--DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
+ V+ K D +F + R+ G V + E+AL + + + + D D+
Sbjct: 2343 TGVIVIDK-DKTVFSQDIRYQTPLLIRSGITGLEVTYA-ADEKALFHEIANIIKRYDPDI 2400
Query: 659 LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-KLRKGRTIFGSGASPGIMS 717
L+G+ I LL RA + + I R+ ++ + R +GS I
Sbjct: 2401 LLGYEIQMHSWGYLLQRAAALSI--DLCRMISRVPDDKIENRFAAERDEYGSYTMSEIN- 2457
Query: 718 CIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE 777
I GR+ + + R+ + +Y+ ++ L++ R + VL + ++ +L
Sbjct: 2458 -IVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQ-RFPLFTFRVLSDW--FDNKTDLYR 2513
Query: 778 YGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRA 832
+ D ++S ++++ L ++ T ++ + G + L RVE ++L +
Sbjct: 2514 WKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKP 2573
Query: 833 KKYI 836
YI
Sbjct: 2574 MNYI 2577
Score = 52 (23.4 bits), Expect = 4.9e-11, Sum P(5) = 4.9e-11
Identities = 25/101 (24%), Positives = 40/101 (39%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG-----RISP---GMIANQ 1386
+ P + + S SE + T ++ TL CP C + + G R P +I NQ
Sbjct: 3011 ELPRIHKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHGICSKCRSQPQHVAVILNQ 3070
Query: 1387 ----VKRQADGFVSMYYKGLMMCDDE--TCKYTTCSLNLRL 1421
++RQ + V + K C D C C + +L
Sbjct: 3071 EIRELERQQEQLVKIC-KNCTGCFDRHIPCVSLNCPVLFKL 3110
Score = 47 (21.6 bits), Expect = 1.7e-10, Sum P(5) = 1.7e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ FD C S+ V K S+ E
Sbjct: 3074 ELERQQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRE 3116
Score = 41 (19.5 bits), Expect = 4.9e-11, Sum P(5) = 4.9e-11
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 530 TVDSPKDIRVSSSSKHVAEVPPVT-VTAINLK 560
+V SP+ R S+K ++P + V ++NL+
Sbjct: 1576 SVTSPRKPRTPRSTKQKEKIPKLLKVDSLNLQ 1607
Score = 39 (18.8 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 761 DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVL-PLTRQLT 803
++LK +L ++Y + S EL H VL P Q T
Sbjct: 307 EILKQNDFSVTLSGSVDYSDGSQEFSAELTLHSEVLSPEMLQCT 350
Score = 37 (18.1 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 200 IKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQNCDVVEES 245
I + V+S+ N Q + NSV ++S + + ++C +E+S
Sbjct: 1595 IPKLLKVDSL--NLQNSSQLDNSVSDDSPIFFSDPGFESCYSLEDS 1638
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 199 (75.1 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 75/216 (34%), Positives = 99/216 (45%)
Query: 850 AKQRSN-HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP--------AYAGGLVLEPK 900
A QRS GVE ++ + A F N HR G P A GG V++
Sbjct: 352 AIQRSRLTGVE---LDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSI 408
Query: 901 KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVP--HLPSSKTTG-VLPELLKN 957
GLYD +L+LDF SLYPSII+ + I P GL+ LP K +P
Sbjct: 409 PGLYDS-VLVLDFKSLYPSIIRSFLI-------DPLGLIEGLKLPIGKQADHAVPGFRGG 460
Query: 958 LVQRRR-----MV-KTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
R + M+ K W + Q+ Q A+K+ NS YG LG S RF+ LA
Sbjct: 461 QFHRTKHFLPEMIEKLWAARDEAKRNQEKAFSQ-AIKIIMNSFYGVLGSSGCRFFDARLA 519
Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
IT +G EI+ T L++ +VIYGDTDS +
Sbjct: 520 SSITMRGHEIMIQTKRLIEAR-GYQVIYGDTDSTFV 554
Score = 47 (21.6 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
ID +Y +Q+ PV + I E +A LGL
Sbjct: 751 IDYQHYIDKQLKPVADAILPFIGKQFDELIAPQLGL 786
Score = 44 (20.5 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ-EDMRSGQVALEKY 1171
KGL+ R DW+ L++ I + E + +I + Q +D Q L +
Sbjct: 636 KGLESARTDWTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRR 695
Query: 1172 VITKTLTKPPE 1182
+ PP+
Sbjct: 696 LHEYQKNVPPQ 706
Score = 40 (19.1 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 527 YEITVDSPKDIRVSSSSK-HVAEVP 550
Y I +DSP D RV + AE P
Sbjct: 171 YSIGLDSPMDSRVIMIGQPEPAETP 195
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 199 (75.1 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 75/216 (34%), Positives = 99/216 (45%)
Query: 850 AKQRSN-HGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGP--------AYAGGLVLEPK 900
A QRS GVE ++ + A F N HR G P A GG V++
Sbjct: 352 AIQRSRLTGVE---LDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSI 408
Query: 901 KGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVP--HLPSSKTTG-VLPELLKN 957
GLYD +L+LDF SLYPSII+ + I P GL+ LP K +P
Sbjct: 409 PGLYDS-VLVLDFKSLYPSIIRSFLI-------DPLGLIEGLKLPIGKQADHAVPGFRGG 460
Query: 958 LVQRRR-----MV-KTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLA 1011
R + M+ K W + Q+ Q A+K+ NS YG LG S RF+ LA
Sbjct: 461 QFHRTKHFLPEMIEKLWAARDEAKRNQEKAFSQ-AIKIIMNSFYGVLGSSGCRFFDARLA 519
Query: 1012 ELITQQGREILRSTVDLVQNNLNLEVIYGDTDSIMI 1047
IT +G EI+ T L++ +VIYGDTDS +
Sbjct: 520 SSITMRGHEIMIQTKRLIEAR-GYQVIYGDTDSTFV 554
Score = 47 (21.6 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 1251 IDIDYYASQQIHPVVSRLCASIEGTSPERLADCLGL 1286
ID +Y +Q+ PV + I E +A LGL
Sbjct: 751 IDYQHYIDKQLKPVADAILPFIGKQFDELIAPQLGL 786
Score = 44 (20.5 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 1113 KGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQ-EDMRSGQVALEKY 1171
KGL+ R DW+ L++ I + E + +I + Q +D Q L +
Sbjct: 636 KGLESARTDWTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRR 695
Query: 1172 VITKTLTKPPE 1182
+ PP+
Sbjct: 696 LHEYQKNVPPQ 706
Score = 40 (19.1 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 527 YEITVDSPKDIRVSSSSK-HVAEVP 550
Y I +DSP D RV + AE P
Sbjct: 171 YSIGLDSPMDSRVIMIGQPEPAETP 195
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 138 (53.6 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 46/152 (30%), Positives = 72/152 (47%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G+ PS + GVLP +L+ +++
Sbjct: 2569 GKYDEFKFGCTSLRVPPDLLYQIRHDITV---SPNGIAFVKPSVRK-GVLPRMLEEILKT 2624
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITQQ 1017
R MVK MK + + LD +Q LKL AN +G FS R + + I +
Sbjct: 2625 RLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTAANFSG-RMPCIEVGDSIVHK 2683
Query: 1018 GREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
RE L + LV + V+YGDTDS+ +
Sbjct: 2684 ARETLERAIKLVNDTKKWGARVVYGDTDSMFV 2715
Score = 112 (44.5 bits), Expect = 6.2e-08, Sum P(6) = 6.2e-08
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2503 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2560
Score = 103 (41.3 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 36/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2777 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLE----GKASI 2832
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 2833 QDFIFAKEY-RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVII--YGTPG-- 2887
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
V + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2888 -VPLIQLVRRPVEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 2929
Score = 75 (31.5 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 41/203 (20%), Positives = 86/203 (42%)
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP- 698
E+AL + + + D D+L+G+ I LL RA V + I R+ ++
Sbjct: 2310 EKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSV--DLGQMISRVPDDKIEN 2367
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
+ R +GS I I GR+ + + R+ + +Y+ ++ L++ R +
Sbjct: 2368 RFAPERDDYGSETMSEIN--IVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQ-RFPLF 2424
Query: 759 PHDVLKMFQTLESLMELIEYGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWGKT 813
VL + ++ +L + D ++S ++++ L ++ T ++ + G +
Sbjct: 2425 TFRVLSDW--FDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHV 2482
Query: 814 LQGARAQRVEYLLLHAFRAKKYI 836
L RVE ++L + YI
Sbjct: 2483 LTRGSQYRVESMMLRIAKPMNYI 2505
Score = 51 (23.0 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
+ P + + S SE + T ++ TL CP C + + G
Sbjct: 2939 ELPRIQKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHG 2980
Score = 47 (21.6 bits), Expect = 4.6e-10, Sum P(6) = 4.6e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ FD C S+ V K S+ E
Sbjct: 3002 ELERKQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRE 3044
Score = 45 (20.9 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 397 LEKDAEESRISPMAFRKKLQDVA--LGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
LE+ E S +SP++ K Q ++ G T+ ++L N + + Q +
Sbjct: 2138 LERLPEASSLSPLSTEPKTQKLSHKKGSNTDTFRRILLTQAKNQFAAVNTPKKETSQIDG 2197
Query: 455 PAGEN-YVLKIN 465
P+ N Y K++
Sbjct: 2198 PSLNNTYGFKVS 2209
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(4) = 2.9e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 761 DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVL-PLTRQLT 803
++LK +L ++Y + S EL H VL P T Q T
Sbjct: 229 EILKQNDFSVTLSGSVDYSDGSQEFSAELTLHSEVLSPDTLQCT 272
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(6) = 1.8e-10
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 109 DGQR--SIKKQRIEKRGKKENNQNV 131
+GQ ++ K+ ++KR +K N N+
Sbjct: 1446 EGQSGLAVLKELLQKRQQKAQNANI 1470
Score = 38 (18.4 bits), Expect = 2.2e-10, Sum P(6) = 2.2e-10
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 100 PSSSDDESLDGQRSIKKQRIE 120
P +SDDE + Q I+K+ +E
Sbjct: 368 PQNSDDEENEPQ--IEKEEME 386
Score = 38 (18.4 bits), Expect = 2.2e-10, Sum P(6) = 2.2e-10
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 100 PSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
P+ + SL+ +++K+ R +K KP +
Sbjct: 1481 PNKNISGSLEQNKTVKRTRSVTSSRKPRTPRSTKPKEKI 1519
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 138 (53.6 bits), Expect = 2.1e-10, Sum P(6) = 2.1e-10
Identities = 46/152 (30%), Positives = 72/152 (47%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G+ PS + GVLP +L+ +++
Sbjct: 2647 GKYDEFKFGCTSLRVPPDLLYQIRHDITV---SPNGIAFVKPSVRK-GVLPRMLEEILKT 2702
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITQQ 1017
R MVK MK + + LD +Q LKL AN +G FS R + + I +
Sbjct: 2703 RLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTAANFSG-RMPCIEVGDSIVHK 2761
Query: 1018 GREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
RE L + LV + V+YGDTDS+ +
Sbjct: 2762 ARETLERAIKLVNDTKKWGARVVYGDTDSMFV 2793
Score = 112 (44.5 bits), Expect = 7.1e-08, Sum P(6) = 7.1e-08
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2581 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2638
Score = 103 (41.3 bits), Expect = 2.1e-10, Sum P(6) = 2.1e-10
Identities = 36/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2855 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLE----GKASI 2910
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 2911 QDFIFAKEY-RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVII--YGTPG-- 2965
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
V + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2966 -VPLIQLVRRPVEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 3007
Score = 75 (31.5 bits), Expect = 2.1e-10, Sum P(6) = 2.1e-10
Identities = 41/203 (20%), Positives = 86/203 (42%)
Query: 640 ERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP- 698
E+AL + + + D D+L+G+ I LL RA V + I R+ ++
Sbjct: 2388 EKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSV--DLGQMISRVPDDKIEN 2445
Query: 699 KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVG 758
+ R +GS I I GR+ + + R+ + +Y+ ++ L++ R +
Sbjct: 2446 RFAPERDDYGSETMSEIN--IVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQ-RFPLF 2502
Query: 759 PHDVLKMFQTLESLMELIEYGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWGKT 813
VL + ++ +L + D ++S ++++ L ++ T ++ + G +
Sbjct: 2503 TFRVLSDW--FDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHV 2560
Query: 814 LQGARAQRVEYLLLHAFRAKKYI 836
L RVE ++L + YI
Sbjct: 2561 LTRGSQYRVESMMLRIAKPMNYI 2583
Score = 51 (23.0 bits), Expect = 2.1e-10, Sum P(6) = 2.1e-10
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
+ P + + S SE + T ++ TL CP C + + G
Sbjct: 3017 ELPRIQKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHG 3058
Score = 47 (21.6 bits), Expect = 5.3e-10, Sum P(6) = 5.3e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ FD C S+ V K S+ E
Sbjct: 3080 ELERKQEQLVKICKNCTGCFDRHIPCVSLNCPVLFKLSRVNRE 3122
Score = 45 (20.9 bits), Expect = 2.1e-10, Sum P(6) = 2.1e-10
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 397 LEKDAEESRISPMAFRKKLQDVA--LGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAEI 454
LE+ E S +SP++ K Q ++ G T+ ++L N + + Q +
Sbjct: 2216 LERLPEASSLSPLSTEPKTQKLSHKKGSNTDTFRRILLTQAKNQFAAVNTPKKETSQIDG 2275
Query: 455 PAGEN-YVLKIN 465
P+ N Y K++
Sbjct: 2276 PSLNNTYGFKVS 2287
Score = 44 (20.5 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 761 DVLKMFQTLESLMELIEYGETDAWLSMELMFHLSVL-PLTRQLT 803
++LK +L ++Y + S EL H VL P T Q T
Sbjct: 307 EILKQNDFSVTLSGSVDYSDGSQEFSAELTLHSEVLSPDTLQCT 350
Score = 39 (18.8 bits), Expect = 2.1e-10, Sum P(6) = 2.1e-10
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 109 DGQR--SIKKQRIEKRGKKENNQNV 131
+GQ ++ K+ ++KR +K N N+
Sbjct: 1524 EGQSGLAVLKELLQKRQQKAQNANI 1548
Score = 38 (18.4 bits), Expect = 2.6e-10, Sum P(6) = 2.6e-10
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 100 PSSSDDESLDGQRSIKKQRIE 120
P +SDDE + Q I+K+ +E
Sbjct: 446 PQNSDDEENEPQ--IEKEEME 464
Score = 38 (18.4 bits), Expect = 2.6e-10, Sum P(6) = 2.6e-10
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 100 PSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
P+ + SL+ +++K+ R +K KP +
Sbjct: 1559 PNKNISGSLEQNKTVKRTRSVTSSRKPRTPRSTKPKEKI 1597
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 143 (55.4 bits), Expect = 4.1e-10, Sum P(6) = 4.1e-10
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G+ PS + GVLP +L+ +++
Sbjct: 2644 GKYDEFKFGCTSLRVPPDLLYQIRHDITV---SPNGIAFVKPSVRK-GVLPRMLEEILKT 2699
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITQQ 1017
R MVK MK ++ + LD +Q LKL AN +G FS R + + I +
Sbjct: 2700 RLMVKRSMKAYKQDRVLSRMLDARQLGLKLIANVTFGYTAANFSG-RMPCIEVGDSIVHK 2758
Query: 1018 GREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
RE L + LV + V+YGDTDS+ +
Sbjct: 2759 ARETLERAIKLVNDTKKWGARVVYGDTDSLFV 2790
Score = 112 (44.5 bits), Expect = 3.9e-07, Sum P(6) = 3.9e-07
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2578 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2635
Score = 97 (39.2 bits), Expect = 4.1e-10, Sum P(6) = 4.1e-10
Identities = 34/164 (20%), Positives = 72/164 (43%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2852 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLE----GKASI 2907
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I
Sbjct: 2908 QDFIFAKEY-RGSASYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIY-----GAP 2961
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
V + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2962 GVPLIQLVRRPVEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 3004
Score = 70 (29.7 bits), Expect = 4.1e-10, Sum P(6) = 4.1e-10
Identities = 41/205 (20%), Positives = 85/205 (41%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVP-SSMWSKIGRLKRSE 696
+ E+ L + + + D D+L+G+ I LL RA V M S++ K
Sbjct: 2383 ADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQRAAALSVDLCQMISRVPDDKTEN 2442
Query: 697 MPKLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
+ R +GS I I GR+ + + R+ + +Y+ ++ L++ R
Sbjct: 2443 --RFAAERDEYGSDVMSEIN--IVGRITLNLWRIMRNEVALNNYTFENVSFHVLHQ-RFP 2497
Query: 757 VGPHDVLKMFQTLESLMELIEYGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWG 811
+ VL + ++ +L + D ++S ++++ L ++ T ++ + G +
Sbjct: 2498 LFTFRVLSDW--FDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFL 2555
Query: 812 KTLQGARAQRVEYLLLHAFRAKKYI 836
L RVE ++L + YI
Sbjct: 2556 HVLTRGSQYRVESMMLRIAKPMNYI 2580
Score = 50 (22.7 bits), Expect = 4.1e-10, Sum P(6) = 4.1e-10
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
+ P + + S SE + T ++ TL CP C + + G
Sbjct: 3014 ELPRIQKATSSSRSELEGRKGTIAQYFTTLHCPVCDDLTQHG 3055
Score = 49 (22.3 bits), Expect = 4.1e-10, Sum P(6) = 4.1e-10
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 396 KLEKDAEESRISPMAFRKKLQDVA--LGLKTEIANQLLNLNVSNYIVSPVKRRYAFGQAE 453
KLE+ E + +SP++ K+Q ++ G T+ ++L N + + Q +
Sbjct: 2212 KLERLPEATGLSPLSTEPKIQKLSHKKGSNTDALRRVLLTQAKNQFAAVNTPKKETSQID 2271
Query: 454 IPAGEN-YVLKIN 465
P+ N Y K++
Sbjct: 2272 GPSLNNTYGFKVS 2284
Score = 47 (21.6 bits), Expect = 7.6e-10, Sum P(6) = 7.6e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ FD C S+ V K S+ E
Sbjct: 3077 ELERQQERLVKICKNCTGCFDRHIPCVSLNCPVLYKLSRVNRE 3119
Score = 39 (18.8 bits), Expect = 4.1e-10, Sum P(6) = 4.1e-10
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 100 PSSSDDESLDGQRSIKKQRIEKRGKKENNQNVRKPNPSL 138
P+ + SL+ +S+K+ R +K KP +
Sbjct: 1561 PNKNISVSLEHNKSVKRTRSVTSPRKPRTPRSTKPKEKI 1599
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 154 (59.3 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 44/141 (31%), Positives = 75/141 (53%)
Query: 914 NSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVK-TWMKTA 972
N L P+I+Q + + +P+G V ++ + +L ++L +++ R ++K T
Sbjct: 972 NILKPNILQ---LLGDNITIAPNG-VTYVKQNIRKSILAKMLSDILDTRVLLKRTISDMH 1027
Query: 973 SGLK--IQQLDIQQQALKLTANSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLV 1029
+G K + LD +Q ALKL AN YG S S R +A+ I GRE LR+ + ++
Sbjct: 1028 NGSKRLLSTLDNRQLALKLLANVTYGYASASYSGRMPCSDIADSIVHTGRETLRAAIQMI 1087
Query: 1030 Q--NNLNLEVIYGDTDSIMIH 1048
+ + V+YGDTDS+ +H
Sbjct: 1088 EKEDKWGARVVYGDTDSLFVH 1108
Score = 116 (45.9 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTV-ERSPDGLVPHLPSSKTTGVL-P 952
L+LEP Y +L+LDF SLYPSII YN C+TT+ R+ + TT +L P
Sbjct: 917 LILEPDPTFYTSPVLVLDFQSLYPSIIIAYNYCYTTILGRTREMTAGENKIGITTNILKP 976
Query: 953 ELLKNL 958
+L+ L
Sbjct: 977 NILQLL 982
Score = 77 (32.2 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 32/162 (19%), Positives = 67/162 (41%)
Query: 1111 ERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVALEK 1170
+ KG++ VRRD +++ L + + + I N K+ +G V +
Sbjct: 1171 DAKGIETVRRDGHPAQRKIIQRSLEILFRTKDLSQLKAYIVNQFWKIM----TGSVPIGD 1226
Query: 1171 YVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSV 1230
+ +K + + +A P QVA R+ ++ + V Y++ S
Sbjct: 1227 FCFSKEV-RLGFYKSEAAAPPAAQVARRMMENDSMAEPQYRERVSYVVA-----KSRPGT 1280
Query: 1231 GIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+A R P + D + +D +YY ++ + P ++RL ++
Sbjct: 1281 LLADRCIAPQDFL-ADPRLELDAEYYITKTLIPPLNRLLQTV 1321
Score = 61 (26.5 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 52/246 (21%), Positives = 91/246 (36%)
Query: 594 WKKPGMLSHFTVVRKLDGGIFPMGFNKEATDR--NSKAGSNVLCCESSERALLNRLMIEL 651
W G S T+ DG + + N R G + +SE L+ +
Sbjct: 656 WSIDGPQSVGTMELSTDGLLVSLNENDAIYKRIIEEACGKTRVAFFTSEYELITEFAKLV 715
Query: 652 YKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMPKLRKGRTIFGSGA 711
+D D+L G+ + +L RA++ I RL R + L +
Sbjct: 716 LIIDPDILSGYETNKSSWGYILARAELSH-NIDFGLLISRLSRDDRSGLASE---WNYSH 771
Query: 712 SPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLES 771
S GI IAGR + + + R + Y++ +A L+ +R H+ L F +S
Sbjct: 772 SAGIK--IAGRHMLNVWRKMRTEVNLAKYNIENVAYHLLH-ERLPKFTHETLSGFWRTKS 828
Query: 772 ----LMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLL 827
+ +I Y ++ L+ V+ T + + G + L RVE +L
Sbjct: 829 DRTSIKIVINYCLERVRCNIRLLNLKQVISRTVEQARLIGIDFYSVLSRGSQYRVESVLA 888
Query: 828 HAFRAK 833
+A+
Sbjct: 889 RLAKAE 894
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 141 (54.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 65/303 (21%), Positives = 127/303 (41%)
Query: 976 KIQQLDIQQQALKLTANSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLVQNNLN 1034
K+QQ +Q++LKL ++G G + S R LA+ I Q G+ +L ++L+ N+
Sbjct: 1334 KLQQ---RQKSLKLFMCVIFGYTGATFSGRMPLGDLADSIIQIGKFLLNQAINLINNSKK 1390
Query: 1035 --LEVIYGDTDSIMIHSXXXXXXXXXXXXXXVIQEVNKKYKC-LEIDLDGXXXXXXXXXX 1091
+VIYGDTDS+ ++ + EV+K + L++ +
Sbjct: 1391 WGAQVIYGDTDSVFVNIKGVSVNDAIKIGKEIESEVSKMFPYPLKLKYEKTYQNLVILTK 1450
Query: 1092 XXXXXXXXQFKDGMPYEVIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIH 1151
+ + P E KGL+++R+D + CL +L ++ + ++
Sbjct: 1451 KRYAGFFVENETDEPK--FEAKGLEVMRKDGCQALSIIMKNCLETLLKNKNLSAIKLYLN 1508
Query: 1152 NSLMKVQEDMRSGQ-VALEKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSA 1210
K+ D S + + + K + T PP PH ++AL+ + T
Sbjct: 1509 GEWQKLLNDQFSYRDLIISKECKLENYTMPP---------PHARIALKEMKRDPQTKPKY 1559
Query: 1211 GDTVPYIICCEQGTSSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCA 1270
G + Y I ++ S + +E K + + I+++ Y +QI+ + RL +
Sbjct: 1560 GQRIKYFII-----NNPQSQRLYDCVVSVNEFMK-NYRHQINLNEYLEKQINSALGRLFS 1613
Query: 1271 SIE 1273
+ +
Sbjct: 1614 TFD 1616
Score = 102 (41.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
L LEP K Y +++LDF SLYPSI+ YN+CF+T
Sbjct: 1202 LTLEPPKLFYVDPVIVLDFISLYPSIMIAYNLCFST 1237
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 133 (51.9 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 47/152 (30%), Positives = 74/152 (48%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ Y I V SP+G+ PS + GVLP +L+ +++
Sbjct: 2633 GKYDEFKFGCTSLRVPPDLL--YQIRHD-VTVSPNGVAFVKPSVRK-GVLPRMLEEILKT 2688
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITQQ 1017
R MVK MK+ + + L+ +Q LKL AN +G FS R + + I +
Sbjct: 2689 RLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFGYTAANFSG-RMPCIEVGDSIVHK 2747
Query: 1018 GREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
RE L + LV + V+YGDTDS+ +
Sbjct: 2748 ARETLERAIKLVNDTKKWGARVVYGDTDSMFV 2779
Score = 112 (44.5 bits), Expect = 3.9e-07, Sum P(6) = 3.9e-07
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2567 NYIPVTPSIQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2624
Score = 96 (38.9 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2841 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVE----GKASI 2896
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 2897 QDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVII--YGTPG-- 2951
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+ + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2952 -LPLIQLIRRPAEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 2993
Score = 78 (32.5 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 59/304 (19%), Positives = 124/304 (40%)
Query: 543 SKHVAEVPPVTVTAINLKTVFNKRQDVNEIVSASVVCC--HKAKIDTPMLASEWKKPGML 600
+K + E+ +T+ ++ L R+D+ +C + DTP+ +E + L
Sbjct: 2280 AKALHEIQNLTLISVELHA--RTRRDLQPDPEFDPICALFYCISSDTPLPDTEKTE---L 2334
Query: 601 SHFTVVRKLDGGIFPMGFNKEAT--DRNSKAGSNVLCCESSERALLNRLMIELYKLDSDV 658
+ V+ K D + + R+ G V + E+AL + + + D D+
Sbjct: 2335 TGVIVIDK-DKTVTHQDIRSQTPLLIRSGITGLEVTYA-ADEKALFQEITNIIKRYDPDI 2392
Query: 659 LVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEMP-KLRKGRTIFGSGASPGIMS 717
L+G+ I LL RA V + I R+ ++ + R +GS I
Sbjct: 2393 LLGYEIQMHSWGYLLQRAAALSV--DLCQMISRVPDDKIENRFAAERDDYGSDTMSEIN- 2449
Query: 718 CIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKEVGPHDVLKMFQTLESLMELIE 777
I GR+ + + R+ + +Y+ ++ L++ R + VL + ++ +L
Sbjct: 2450 -IVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQ-RFPLFTFRVLSDW--FDNKTDLYR 2505
Query: 778 YGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRA 832
+ D ++S ++++ L ++ T ++ + G + L RVE ++L +
Sbjct: 2506 WKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKP 2565
Query: 833 KKYI 836
YI
Sbjct: 2566 MNYI 2569
Score = 54 (24.1 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 23/93 (24%), Positives = 36/93 (38%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG-----RISP---GMIANQ 1386
+ P + + S SE + T ++ TL CP C + + G R P +I NQ
Sbjct: 3003 ELPRIQKATSSSRSELEGRKGTISQYFTTLHCPVCDDLTQHGICSKCRSQPQHVAIILNQ 3062
Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTC-SLN 1418
R+ + K C ++ C SLN
Sbjct: 3063 EIRELERKQEQLIKICRNCTGSFDRHIPCVSLN 3095
Score = 49 (22.3 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E LI C +C+ +FD C S+ V K S+ E
Sbjct: 3066 ELERKQEQLIKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRE 3108
Score = 42 (19.8 bits), Expect = 3.8e-07, Sum P(4) = 3.8e-07
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 845 KETKMAKQRSNHGVEDRNVEELTNEDA 871
K+T ++K + H VE E L NE+A
Sbjct: 359 KDTDLSKGNTKHKVE----EALINEEA 381
Score = 39 (18.8 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 212 NSQLVTNSTNSVKENSDLINN 232
NS +VTN N + + L+++
Sbjct: 1183 NSSVVTNKRNKRNQTTKLVDD 1203
Score = 39 (18.8 bits), Expect = 4.3e-09, Sum P(6) = 4.3e-09
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 538 RVSSSSKHVAEVPPVTVTAINLKTVFNKRQDVNE 571
RV +S+ A+V N V NKR N+
Sbjct: 1163 RVGKASRARAQVKKSKARLANSSVVTNKRNKRNQ 1196
Score = 38 (18.4 bits), Expect = 3.5e-09, Sum P(6) = 3.5e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 397 LEKDAEESRISPMAFRKKLQDV--ALGLKTE-IANQLLNLNVSNYIVSPVKRRYAFGQAE 453
LEK E + +SP++ K Q + G + + LL V N + + Q +
Sbjct: 2201 LEKLPEATGLSPLSVEPKTQKLYNKKGSDADGLRRVLLTTQVENQFAAVNTPKKETSQID 2260
Query: 454 IPAGEN-YVLKIN 465
P+ N Y K++
Sbjct: 2261 GPSLNNTYGFKVS 2273
Score = 37 (18.1 bits), Expect = 4.3e-09, Sum P(6) = 4.3e-09
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 347 SGANMGTLYLFGKVKAGSTHHSCCVVVKNMQRCVYAIPNGPLFQ 390
S ANM ++ + G+T H + N + + I N FQ
Sbjct: 350 SPANMIEVHKDTDLSKGNTKHKVEEALINEEAILNLIENSQTFQ 393
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 130 (50.8 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 45/154 (29%), Positives = 76/154 (49%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G+ PS + GVLP +L+ +++
Sbjct: 2629 GKYDEFKFGCTSLRVPPDLLYQIRHDITV---SPNGVAFVKPSVRK-GVLPRMLEEILKT 2684
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYGCLGFSNSRFYAK-PLAEL---IT 1015
R MVK MK + + L+ +Q LKL AN +G ++++ F + P E+ I
Sbjct: 2685 RFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFG---YTSANFSGRMPCIEVGDSIV 2741
Query: 1016 QQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
+ RE L + LV + V+YGDTDS+ +
Sbjct: 2742 HKARETLERAIKLVNDTKKWGARVVYGDTDSMFV 2775
Score = 112 (44.5 bits), Expect = 5.9e-07, Sum P(6) = 5.9e-07
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2563 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2620
Score = 96 (38.9 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2837 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVE----GKASI 2892
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 2893 QDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIV--YGTPG-- 2947
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+ + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2948 -LPLIQLIRRPAEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 2989
Score = 75 (31.5 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 41/205 (20%), Positives = 87/205 (42%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
+ E+AL + + + D D+L+G+ I LL RA V + I R+ ++
Sbjct: 2368 ADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSV--DLCQMISRVPDDKI 2425
Query: 698 P-KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
+ R +GS I I GR+ + + R+ + +Y+ ++ L++ R
Sbjct: 2426 ENRFAAERDDYGSDTMSEIN--IVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQ-RFP 2482
Query: 757 VGPHDVLKMFQTLESLMELIEYGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWG 811
+ VL + ++ +L + D ++S ++++ L ++ T ++ + G +
Sbjct: 2483 LFTFRVLSDW--FDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFL 2540
Query: 812 KTLQGARAQRVEYLLLHAFRAKKYI 836
L RVE ++L + YI
Sbjct: 2541 HVLTRGSQYRVESMMLRIAKPMNYI 2565
Score = 48 (22.0 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ +FD C S+ V K S+ E
Sbjct: 3062 ELERQQEQLVKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRE 3104
Score = 47 (21.6 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG-----RISP---GMIANQ 1386
+ P + + S S+ + T ++ TL CP C + G R P +I NQ
Sbjct: 2999 ELPRIQKATSSSRSDLEGRKGTISQYFTTLHCPVCDGLTQHGICSQCRSQPQHVAIILNQ 3058
Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTC-SLN 1418
R+ + K C ++ C SLN
Sbjct: 3059 EIRELERQQEQLVKICRNCTGSFDRHIPCVSLN 3091
Score = 44 (20.5 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 28/116 (24%), Positives = 46/116 (39%)
Query: 360 VKAGSTHHSCCV--VVKNMQRCVYAIPNGPL-FQTDEIMK---LEKDAEESRISPMAFRK 413
+K G SCC V+ + PL + +M LEK E + +SP++
Sbjct: 2154 IKDGIQKASCCESQVISPIHARTRTEKCEPLCLHSTPVMPRKFLEKLPEATGLSPLSVEP 2213
Query: 414 KLQDV--ALGLKTE-IANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN-YVLKIN 465
K Q + G T+ + LL V N + + Q + P+ N Y K++
Sbjct: 2214 KTQKLYNKKGSDTDHLRRVLLTTQVENQFAAVNTPKKETSQIDGPSLNNTYGFKVS 2269
Score = 40 (19.1 bits), Expect = 1.0e-08, Sum P(6) = 1.0e-08
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 201 KSFVSVNSVKTNSQLVTNSTNSVKEN 226
K+ ++ +SV TN + N TN + +N
Sbjct: 1178 KARLAKSSVVTNKRNKRNQTNQLVDN 1203
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 213 SQLVTNSTNSVKENSDLINN 232
S +VTN N + + L++N
Sbjct: 1184 SSVVTNKRNKRNQTNQLVDN 1203
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 199 NIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQN 238
NIK +S +T++ L S + + E D N+ + +
Sbjct: 1068 NIKRTLSFRKKRTHAVLSPPSPSYIAETEDCDLNYSDVMS 1107
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 130 (50.8 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 45/154 (29%), Positives = 76/154 (49%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQR 961
G YD++ + P ++ + T SP+G+ PS + GVLP +L+ +++
Sbjct: 2643 GKYDEFKFGCTSLRVPPDLLYQIRHDITV---SPNGVAFVKPSVRK-GVLPRMLEEILKT 2698
Query: 962 RRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYGCLGFSNSRFYAK-PLAEL---IT 1015
R MVK MK + + L+ +Q LKL AN +G ++++ F + P E+ I
Sbjct: 2699 RFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFG---YTSANFSGRMPCIEVGDSIV 2755
Query: 1016 QQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
+ RE L + LV + V+YGDTDS+ +
Sbjct: 2756 HKARETLERAIKLVNDTKKWGARVVYGDTDSMFV 2789
Score = 112 (44.5 bits), Expect = 6.1e-07, Sum P(6) = 6.1e-07
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 2577 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2634
Score = 96 (38.9 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + MK+ E G+ ++
Sbjct: 2851 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVE----GKASI 2906
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 2907 QDFIFAKEY-RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIV--YGTPG-- 2961
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
+ + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 2962 -LPLIQLIRRPAEVLQ-DPTLRLNATYYITKQILPPLARIFSLI 3003
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 41/205 (20%), Positives = 87/205 (42%)
Query: 638 SSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAQVCRVPSSMWSKIGRLKRSEM 697
+ E+AL + + + D D+L+G+ I LL RA V + I R+ ++
Sbjct: 2382 ADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSV--DLCQMISRVPDDKI 2439
Query: 698 P-KLRKGRTIFGSGASPGIMSCIAGRLLCDTFLCSRDLLREVSYSLTQLAKTQLNKDRKE 756
+ R +GS I I GR+ + + R+ + +Y+ ++ L++ R
Sbjct: 2440 ENRFAAERDDYGSDTMSEIN--IVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQ-RFP 2496
Query: 757 VGPHDVLKMFQTLESLMELIEYGETDAWLS-----MELMFHLSVLPLTRQLTNISGNLWG 811
+ VL + ++ +L + D ++S ++++ L ++ T ++ + G +
Sbjct: 2497 LFTFRVLSDW--FDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFL 2554
Query: 812 KTLQGARAQRVEYLLLHAFRAKKYI 836
L RVE ++L + YI
Sbjct: 2555 HVLTRGSQYRVESMMLRIAKPMNYI 2579
Score = 48 (22.0 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ +FD C S+ V K S+ E
Sbjct: 3076 ELERQQEQLVKICRNCTGSFDRHIPCVSLNCPVLFKLSRVNRE 3118
Score = 47 (21.6 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 1335 DCPAVCSSICMSVSEKPSKPETEYNFWRTLRCPKCPEEVEAG-----RISP---GMIANQ 1386
+ P + + S S+ + T ++ TL CP C + G R P +I NQ
Sbjct: 3013 ELPRIQKATSSSRSDLEGRKGTISQYFTTLHCPVCDGLTQHGICSQCRSQPQHVAIILNQ 3072
Query: 1387 VKRQADGFVSMYYKGLMMCDDETCKYTTC-SLN 1418
R+ + K C ++ C SLN
Sbjct: 3073 EIRELERQQEQLVKICRNCTGSFDRHIPCVSLN 3105
Score = 44 (20.5 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 28/116 (24%), Positives = 46/116 (39%)
Query: 360 VKAGSTHHSCCV--VVKNMQRCVYAIPNGPL-FQTDEIMK---LEKDAEESRISPMAFRK 413
+K G SCC V+ + PL + +M LEK E + +SP++
Sbjct: 2168 IKDGIQKASCCESQVISPIHARTRTEKCEPLCLHSTPVMPRKFLEKLPEATGLSPLSVEP 2227
Query: 414 KLQDV--ALGLKTE-IANQLLNLNVSNYIVSPVKRRYAFGQAEIPAGEN-YVLKIN 465
K Q + G T+ + LL V N + + Q + P+ N Y K++
Sbjct: 2228 KTQKLYNKKGSDTDHLRRVLLTTQVENQFAAVNTPKKETSQIDGPSLNNTYGFKVS 2283
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(6) = 1.1e-08
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 201 KSFVSVNSVKTNSQLVTNSTNSVKEN 226
K+ ++ +SV TN + N TN + +N
Sbjct: 1178 KARLAKSSVVTNKRNKRNQTNQLVDN 1203
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 213 SQLVTNSTNSVKENSDLINN 232
S +VTN N + + L++N
Sbjct: 1184 SSVVTNKRNKRNQTNQLVDN 1203
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(6) = 1.3e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 199 NIKSFVSVNSVKTNSQLVTNSTNSVKENSDLINNFVQIQN 238
NIK +S +T++ L S + + E D N+ + +
Sbjct: 1068 NIKRTLSFRKKRTHAVLSPPSPSYIAETEDCDLNYSDVMS 1107
>UNIPROTKB|F1RZP3 [details] [associations]
symbol:F1RZP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR017964 Pfam:PF00136
PROSITE:PS00116 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00550000074640
EMBL:CU915528 Ensembl:ENSSSCT00000004881 Uniprot:F1RZP3
Length = 440
Score = 101 (40.6 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRSGQVAL 1168
V + KG++ VRRD ++ + L + R + + + +K+ E G+ ++
Sbjct: 161 VFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCLKLLE----GKASI 216
Query: 1169 EKYVITKTLTKPPEAYPDAKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGS 1228
+ ++ K + +Y P +++ ++ + G+ VPY+I GT
Sbjct: 217 QDFIFAKEY-RGSASYKPGACVPALELTRKMLTHDRRSEPRVGERVPYVII--YGTPG-- 271
Query: 1229 SVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRLCASI 1272
V + Q R P E+ + D ++ YY ++QI P ++R+ + I
Sbjct: 272 -VPLIQLVRRPVEVMQ-DPTLRLNATYYITKQILPPLARIFSLI 313
Score = 100 (40.3 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 954 LLKNLVQRRRMVKTWMKTASGLKI--QQLDIQQQALKLTANSMYG--CLGFSNSRFYAKP 1009
+L+ +++ R MVK MK + + L+ +Q LKL AN +G FS R
Sbjct: 1 MLEEILKTRLMVKQSMKAYKQDRALSRMLEARQLGLKLIANVTFGYTAANFSG-RMPCIE 59
Query: 1010 LAELITQQGREILRSTVDLVQNNLN--LEVIYGDTDSIMI 1047
+ + I + RE L + LV + V+YGDTDS+ +
Sbjct: 60 VGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFV 99
Score = 47 (21.6 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 1315 ERYRGCEPLILSCPSCSSTFDCPAVCSSICMSVSEKPSKPETE 1357
E R E L+ C +C+ FD C S+ V K S+ E
Sbjct: 384 ELERQQEQLVKICRNCTGCFDRHIPCVSLNCPVLYKLSRVNRE 426
Score = 46 (21.3 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 1346 SVSEKPSKPETEYNFWRTLRCPKCPEEVEAG 1376
S SE + T ++ TL CP C + + G
Sbjct: 332 SRSEHEGRKGTISQYFTTLHCPVCDDLTQHG 362
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 112 (44.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 872 NFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
N+ T R R P L++EP+ Y +L+LDF SLYPSI+ YN CF+T
Sbjct: 60 NYIPVTPSVQQRSQMRAPQCVP-LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 117
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 786 SMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYI 836
+++++ L ++ T ++ + G + L RVE ++L + YI
Sbjct: 12 NLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYI 62
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 117 (46.2 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 40/193 (20%), Positives = 83/193 (43%)
Query: 941 HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
++ K G+ P L+++++ R M+K M ++L+ + LKL N G +G
Sbjct: 1334 YVKKHKRKGICPLFLEDILKTRIMLKRCMGMYEERVNKKLNERMGKLKLILNVATGYIGA 1393
Query: 1001 SNS-RFYAKPLAELITQQGREILRSTVDLVQNNLN-LEVIYGDTDSI-MIHSXXXXXXXX 1057
+ S R ++E I GR L ++ ++ N ++++YGDTDS+ +++
Sbjct: 1394 NFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFVKILYGDTDSLFLLNETTDDIQSS 1453
Query: 1058 XXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFK-DGMPYEVIERKGLD 1116
++ +N L + L+ FK + +++ KG++
Sbjct: 1454 FKLAYEILNSINNILP-LPMYLNFEKIYCPSLLLTKKRYFGFSFKNENQDNPILDLKGVE 1512
Query: 1117 MVRRDWSLLSKEV 1129
+R D +L K +
Sbjct: 1513 SIRSDQCILVKNI 1525
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
L+L+PK + +L+ DF SLYPSI+ +NIC++T
Sbjct: 1089 LILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Score = 58 (25.5 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 215 LVTNSTNSVKENSD-LIN--NFVQIQNCDVVEESKEL 248
L TN+ S+++N D LIN N + +N D SKEL
Sbjct: 772 LCTNNCRSIEKNRDNLINDKNVINKKNDDTYGSSKEL 808
Score = 54 (24.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 199 NIKSFVSV--NSVKTNSQLVTNST-NSVKENSDLINNFVQIQNCDVVEESKELKWESDNS 255
N+K + V + +K NS N+++ N INN I NC V +++E N
Sbjct: 390 NVKKYNKVINDDMKLKEDHNFNSDMNNIEVNIKQINNNDNINNCKNVVDNEEENDMLSNM 449
Query: 256 TELTKRDN 263
K+D+
Sbjct: 450 ISNKKKDH 457
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 557 INLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
IN K V NK+ D + S+ +CC K T + E
Sbjct: 788 INDKNVINKKND-DTYGSSKELCCSKNGYHTNKIIKE 823
Score = 45 (20.9 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 558 NLKTVFNKRQDVNEIVSASVVCCHKAKIDTPML 590
N+ +FN+ +D+N + + V +++K++ L
Sbjct: 716 NISYLFNESEDMNNLKGTNEVKLNESKLNESKL 748
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 104 DDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
+DE+ + + K + I K EN +N+RK
Sbjct: 611 EDENKED--TSKFEYIGKENHMENKENIRK 638
Score = 39 (18.8 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 449 FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSL---LGTHSSALELF-LVKRKVKG 504
+ I + EN INY L D+ G NF + L L+L R +KG
Sbjct: 868 YSPLSIVSYENDKYNINY-INQRCLALDI-G-NFYKMICKLNDQKKFLDLHNAYSRNIKG 924
Query: 505 PSWLSISKFSSCPAPQRVSWCKYEITVDSP 534
S+ K S+ + CK+ + ++ P
Sbjct: 925 IIIESLYKLSNTYNTSFENLCKHYLNINIP 954
Score = 38 (18.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 434 NVSNYIVSPVKRRYAFGQAE-----IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGT 488
NV Y + VKR+ +G E + Y INY F L L + L
Sbjct: 120 NVCVYNIERVKRKGIYGYNEECDDFLKISFLYPNTINY-FASL-LKKKLFKKRIWDLYEV 177
Query: 489 HSSALELFLVKRKVKGPSWLSISK 512
H + + FL + + G S + I K
Sbjct: 178 HINYMLHFLCMKNIYGCSEIYIDK 201
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 117 (46.2 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 40/193 (20%), Positives = 83/193 (43%)
Query: 941 HLPSSKTTGVLPELLKNLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGF 1000
++ K G+ P L+++++ R M+K M ++L+ + LKL N G +G
Sbjct: 1334 YVKKHKRKGICPLFLEDILKTRIMLKRCMGMYEERVNKKLNERMGKLKLILNVATGYIGA 1393
Query: 1001 SNS-RFYAKPLAELITQQGREILRSTVDLVQNNLN-LEVIYGDTDSI-MIHSXXXXXXXX 1057
+ S R ++E I GR L ++ ++ N ++++YGDTDS+ +++
Sbjct: 1394 NFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFVKILYGDTDSLFLLNETTDDIQSS 1453
Query: 1058 XXXXXXVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFK-DGMPYEVIERKGLD 1116
++ +N L + L+ FK + +++ KG++
Sbjct: 1454 FKLAYEILNSINNILP-LPMYLNFEKIYCPSLLLTKKRYFGFSFKNENQDNPILDLKGVE 1512
Query: 1117 MVRRDWSLLSKEV 1129
+R D +L K +
Sbjct: 1513 SIRSDQCILVKNI 1525
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 895 LVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTT 930
L+L+PK + +L+ DF SLYPSI+ +NIC++T
Sbjct: 1089 LILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Score = 58 (25.5 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 215 LVTNSTNSVKENSD-LIN--NFVQIQNCDVVEESKEL 248
L TN+ S+++N D LIN N + +N D SKEL
Sbjct: 772 LCTNNCRSIEKNRDNLINDKNVINKKNDDTYGSSKEL 808
Score = 54 (24.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 199 NIKSFVSV--NSVKTNSQLVTNST-NSVKENSDLINNFVQIQNCDVVEESKELKWESDNS 255
N+K + V + +K NS N+++ N INN I NC V +++E N
Sbjct: 390 NVKKYNKVINDDMKLKEDHNFNSDMNNIEVNIKQINNNDNINNCKNVVDNEEENDMLSNM 449
Query: 256 TELTKRDN 263
K+D+
Sbjct: 450 ISNKKKDH 457
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 557 INLKTVFNKRQDVNEIVSASVVCCHKAKIDTPMLASE 593
IN K V NK+ D + S+ +CC K T + E
Sbjct: 788 INDKNVINKKND-DTYGSSKELCCSKNGYHTNKIIKE 823
Score = 45 (20.9 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 558 NLKTVFNKRQDVNEIVSASVVCCHKAKIDTPML 590
N+ +FN+ +D+N + + V +++K++ L
Sbjct: 716 NISYLFNESEDMNNLKGTNEVKLNESKLNESKL 748
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 104 DDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
+DE+ + + K + I K EN +N+RK
Sbjct: 611 EDENKED--TSKFEYIGKENHMENKENIRK 638
Score = 39 (18.8 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 449 FGQAEIPAGENYVLKINYPFKDPPLPADLKGENFCSL---LGTHSSALELF-LVKRKVKG 504
+ I + EN INY L D+ G NF + L L+L R +KG
Sbjct: 868 YSPLSIVSYENDKYNINY-INQRCLALDI-G-NFYKMICKLNDQKKFLDLHNAYSRNIKG 924
Query: 505 PSWLSISKFSSCPAPQRVSWCKYEITVDSP 534
S+ K S+ + CK+ + ++ P
Sbjct: 925 IIIESLYKLSNTYNTSFENLCKHYLNINIP 954
Score = 38 (18.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 434 NVSNYIVSPVKRRYAFGQAE-----IPAGENYVLKINYPFKDPPLPADLKGENFCSLLGT 488
NV Y + VKR+ +G E + Y INY F L L + L
Sbjct: 120 NVCVYNIERVKRKGIYGYNEECDDFLKISFLYPNTINY-FASL-LKKKLFKKRIWDLYEV 177
Query: 489 HSSALELFLVKRKVKGPSWLSISK 512
H + + FL + + G S + I K
Sbjct: 178 HINYMLHFLCMKNIYGCSEIYIDK 201
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 128 (50.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 38/119 (31%), Positives = 61/119 (51%)
Query: 902 GLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPD---GLVPHLPSSKTTG--VLPELLK 956
GLY + LDF SLYPS+ + +N+C+TT+ D G++P + ++ T +K
Sbjct: 177 GLYRGPVATLDFASLYPSLFRAHNLCYTTLVHPDDVRLGILPTILAALMTARAATRAAIK 236
Query: 957 NLVQRRRMVKTWMKTASGLKIQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELIT 1015
L T + A+ + LD +Q+ALK+TAN++YG G R A L++
Sbjct: 237 ALGGGGSGAATDLHAAAAAAMV-LDGRQKALKVTANALYGFTGGWKRRRLPAAAAALVS 294
Score = 47 (21.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 785 LSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFRAKKYIV 837
+S +LM L+ LP ++ ++G + L A+ + LL + YIV
Sbjct: 100 ISCDLMERLATLPEMLEMARVTGLTLTQVLYNAQMIKTWSLLHRNAHRQNYIV 152
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 137 (53.3 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 53/200 (26%), Positives = 93/200 (46%)
Query: 854 SNHGVEDRNVEELTNEDANFDNDTSHNDHRKGKRGPAYAGGLVLEPKKGLYDKYILLLDF 913
+N+ + N N + N +N+ ++N+++ G+ + KK + L
Sbjct: 2109 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNQGGEEHIDDNDNSKINKKK--FGASWLENKL 2166
Query: 914 NSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGVLPELLKNLVQRRRMVKTWMKTAS 973
L I+ NI SP+ ++ S TG+ P+LL+ ++ R MVK MK
Sbjct: 2167 GLLESISIEHLNI-------SPNNVI-FTDKSIRTGLFPKLLQEVLDTRIMVKRAMKKID 2218
Query: 974 -GLK--IQQLDIQQQALKLTANSMYGCLGFSNS-RFYAKPLAELITQQGREILRSTVDLV 1029
G K L+ +Q LK+ AN +G + S R + + I Q RE L + + +V
Sbjct: 2219 KGDKKMFNILNARQLGLKMMANVAFGYTAATYSGRMPCIEIGDSIVQTARETLEAAIKIV 2278
Query: 1030 QNNL--NLEVIYGDTDSIMI 1047
+++ N +V+YGDTDS+ +
Sbjct: 2279 ESSKEWNAKVVYGDTDSLFV 2298
Score = 63 (27.2 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 34/164 (20%), Positives = 65/164 (39%)
Query: 1109 VIERKGLDMVRRDWSLLSKEVGDFCLSQILSERSCEDVVESIHNSLMKVQEDMRS-GQVA 1167
+ + KG++ VRRD + ++ + + I + V + K+ +D S
Sbjct: 2360 IFDAKGIETVRRDSCKVVSKILEKSIRIIFETKDISLVKSYVIRQWEKILQDRFSLSDFI 2419
Query: 1168 LEKYVITKTLT-KPPEAYPDAKN--QPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGT 1224
K V T + + D N P +A RL +S G+ V Y++ G
Sbjct: 2420 FSKEVRLGTYKCQQQQNNIDDLNGLPPAALIASRLMKSDPRLEPRYGERVKYVVV--YGE 2477
Query: 1225 SSGSSVGIAQRARHPDELKKGDGKWMIDIDYYASQQIHPVVSRL 1268
+ + + P E + + I++ YY ++QI P + R+
Sbjct: 2478 PNSRLIDLVLT---PMEFLERSDRLRINVIYYITKQILPALDRI 2518
Score = 53 (23.7 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 202 SFVSVNSVKTNSQLVTNST-NSVKE-NSDLINNFVQIQNCDVVEESKEL--KWESDNSTE 257
+F N++ N T+ T N+ K NS+ + F+ I + + K+L K ++DN+
Sbjct: 1096 TFSKTNNLSDNCPTTTSKTPNNEKGGNSNFLVPFLPIGDSPIKNNEKQLEDKKKNDNNNN 1155
Query: 258 LTKRDN 263
+N
Sbjct: 1156 NNNNNN 1161
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 624 DRNSKAGSNVLCCESSERALLNRLMIELYK-LDSDVLVGHNISGFDLDVLLHRAQVCRVP 682
+ N+ G N L + +EL + D D+LVG + + L+ RA ++
Sbjct: 1776 NENNSYGLNCFIKVLHNEFELFKSFVELIRSYDIDILVGFEVQMSSIGYLIERAN--QLG 1833
Query: 683 SSMWSKIGRL 692
S+ +I R+
Sbjct: 1834 LSLCDEISRV 1843
Score = 45 (20.9 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 101 SSSDDESLDGQRSIKKQRIEKRGKKENNQN 130
SSS D+ ++ ++ K I NN N
Sbjct: 259 SSSSDDCIENRKWFKDSLINNNKNNNNNNN 288
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1265 VSRLCAS-IEGTSPERLADCLGLDPSKF 1291
V+ +C S I S E + DC+ LD S F
Sbjct: 2650 VNDICRSCIRDQSVETI-DCISLDCSIF 2676
Score = 37 (18.1 bits), Expect = 0.00079, Sum P(6) = 0.00079
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 101 SSSDDESLDGQRSIKKQRIEKRGKKENNQNVRK 133
S++ D+ L Q K++ EK +KE + K
Sbjct: 928 SNNLDQLLASQLKEKEKEKEKEKEKEKEKEKEK 960
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1517 1391 0.00090 124 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 95
No. of states in DFA: 634 (67 KB)
Total size of DFA: 601 KB (2268 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 120.94u 0.15s 121.09t Elapsed: 00:00:05
Total cpu time: 121.02u 0.15s 121.17t Elapsed: 00:00:06
Start: Sat May 11 12:21:41 2013 End: Sat May 11 12:21:47 2013